BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016587
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
           Conjugating Enzyme, Ubch10
 pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
           Conjugating Enzyme, Ubch10
          Length = 179

 Score = 32.0 bits (71), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 16/90 (17%)

Query: 67  ETLRINFDVTFPA------------LPCSILSVDAMDISGEQHLDVKHDIFKKRLDSQGN 114
           E LR    + FP+             PC   +VD     G   LD+  + +    D +  
Sbjct: 75  EDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ---GNISLDILKEKWSALYDVR-T 130

Query: 115 VIESRQDGIGAPKIDKPLQRHGGRLEHNET 144
           ++ S Q  +G P ID PL  H   L  N T
Sbjct: 131 ILLSIQSLLGEPNIDSPLNTHAAELWKNPT 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,511,333
Number of Sequences: 62578
Number of extensions: 489943
Number of successful extensions: 1035
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 1
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)