Query 016587
Match_columns 386
No_of_seqs 110 out of 542
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2667 COPII vesicle protein 100.0 3E-104 6E-109 771.3 30.0 372 3-386 2-379 (379)
2 PF07970 COPIIcoated_ERV: Endo 100.0 1.6E-72 3.5E-77 523.9 19.0 217 149-366 1-222 (222)
3 PF13850 ERGIC_N: Endoplasmic 100.0 6E-33 1.3E-37 225.1 9.5 96 7-102 1-96 (96)
4 PF10399 UCR_Fe-S_N: Ubiquitin 44.1 12 0.00026 25.4 1.0 31 338-368 8-38 (41)
5 COG3531 Predicted protein-disu 41.7 8.7 0.00019 35.2 0.0 11 143-153 9-19 (212)
6 COG3765 WzzB Chain length dete 34.4 37 0.00079 33.8 3.0 40 325-366 298-337 (347)
7 PF14155 DUF4307: Domain of un 30.5 1.7E+02 0.0038 24.1 6.1 43 36-78 15-58 (112)
8 COG0603 Predicted PP-loop supe 27.1 49 0.0011 31.0 2.4 32 145-177 182-215 (222)
9 KOG4085 Uncharacterized conser 26.6 62 0.0013 28.2 2.7 24 343-366 26-50 (175)
10 PF07413 Herpes_UL37_2: Betahe 26.2 1E+02 0.0022 29.9 4.4 35 337-371 230-267 (276)
11 PF04971 Lysis_S: Lysis protei 24.7 62 0.0014 24.4 2.1 22 352-373 36-58 (68)
12 PF11118 DUF2627: Protein of u 21.9 74 0.0016 24.6 2.1 22 344-365 40-61 (77)
13 PF12421 DUF3672: Fibronectin 21.7 69 0.0015 27.5 2.2 23 199-221 30-52 (136)
No 1
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-104 Score=771.27 Aligned_cols=372 Identities=54% Similarity=0.950 Sum_probs=340.4
Q ss_pred HhhhhcccccCCCCCCCCceeeeccccEehhhHHHHHHHHHHHHhhhccceeeEEEEEEecCCCceeEEEEEEEeCccCC
Q 016587 3 AIMNKIRSLDAYPKINEDFYSRTFSGGVITLVSSIVMLLLFFSELRLYLNAVTETKLLVDTSRGETLRINFDVTFPALPC 82 (386)
Q Consensus 3 ~~~~~lk~~D~F~K~~~~~~~~T~~GgivSii~~~ii~~L~~~E~~~y~~~~~~~~l~VD~~~~~~l~in~dItfp~~pC 82 (386)
++++.||+||||||++||++++|.+||.+||+|+++|++||++|+..|+.+...+++.||.+++++|+||||||||+|||
T Consensus 2 ~~~~~lk~~Daf~K~~ed~~~~s~sGg~islis~l~i~~L~~~E~~~y~~~~~~~~~~vd~s~~e~l~in~DItfp~lpC 81 (379)
T KOG2667|consen 2 GILSKLKSFDAFPKTPEDYREKSLSGGLISLIAFLIILFLFFMELSQYLSVITSTELFVDDSRDEKLQINFDITFPALPC 81 (379)
T ss_pred chhhhhhhccccccchHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHhhhcceeEEEEeCCCCceeeeeeeEEeccCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeeEecCCceeeccccceeeeeecCCCceeecc--ccCCCCCCCCccccccCCccccCCCccCCCcccCC---CCC
Q 016587 83 SILSVDAMDISGEQHLDVKHDIFKKRLDSQGNVIESR--QDGIGAPKIDKPLQRHGGRLEHNETYCGSCYGAES---SDE 157 (386)
Q Consensus 83 ~~l~vDv~D~~G~~~~~~~~~i~k~rld~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~cg~Cyga~~---~~~ 157 (386)
++|+|||+|.+|+.++++.++|.|.|+|. +++... ..+..+.+ .........+|+.||+++. ...
T Consensus 82 ~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k--------~~~p~~~~~~c~~~~~~~~~~~~~~ 151 (379)
T KOG2667|consen 82 SILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHK--------QTIPTTDPILCGLCYGAEDFNDGDI 151 (379)
T ss_pred ceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccc--------cccCCCCccchhhhhhhhccccccc
Confidence 99999999999999999999999999998 444311 11111110 0000112478999999997 578
Q ss_pred ccccchHHHHHHHHHcCCCCCCCCchhhhhhhcchhhcccccCCccEEEEEEEEeeeeeeEEEcCCCCcCCCCceeeeec
Q 016587 158 DCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDIL 237 (386)
Q Consensus 158 ~CCntC~~v~~ay~~~~~~~~~~~~~~qc~~~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~h~~~ 237 (386)
+||++|++|++||+.++|.+.+.+.++||.++++.++.+...+|||||+|++.||||+|||||+||++++++..|.||..
T Consensus 152 ~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~ 231 (379)
T KOG2667|consen 152 DCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLS 231 (379)
T ss_pred hhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhh
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999987
Q ss_pred cccCCCcccceEeeeeeccCCCCCCCCCCCCceeeecCCceeEEEEEEEEEeEEEeCCCceEEeeeeeEEEEeeeccCCC
Q 016587 238 AFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGR 317 (386)
Q Consensus 238 ~~~~~~~N~SH~I~~lsFG~~~pg~~~PLdg~~~i~~~~~~~~~Y~lkVVPT~y~~~~~~~~~t~QYSvt~~~~~~~~~~ 317 (386)
.+ +.+|+||+|||||||+.+|++.|||||+..++.+...+|+||+|||||.|.+..+..+.|||||||++++....+.
T Consensus 232 ~~--~~~n~SH~InhLSFG~~~p~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~~~~~~~ 309 (379)
T KOG2667|consen 232 LL--DNLNFSHRINHLSFGEYIPGIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEYVLHSHR 309 (379)
T ss_pred hc--ccCCceEEEeeeccCCCCcccccCCCCccccccCCccceeeEEEEcceEEEeecCceecceeeeeeeeEEeccccc
Confidence 66 6899999999999999999999999999999999999999999999999998888889999999999999876444
Q ss_pred CC-CcceEEEEEeceeeEEEEEeeeccHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 016587 318 LQ-TLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS 386 (386)
Q Consensus 318 ~~-~~Pgi~F~Yd~SPi~V~~~e~~~~~~~flt~lcaIiGGvftv~glid~~~~~~~~~i~~k~~~gk~~ 386 (386)
.+ ++|||||+||+|||+|+++|+|+||+||||||||||||+||+|||||+++|++++.+++|.++||+.
T Consensus 310 ~~~~~PGifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~~~gk~~ 379 (379)
T KOG2667|consen 310 AKSGIPGIFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKIALGKYT 379 (379)
T ss_pred cccCCCeEEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcchhhhccC
Confidence 44 8999999999999999999999999999999999999999999999999999999999999999974
No 2
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=100.00 E-value=1.6e-72 Score=523.90 Aligned_cols=217 Identities=59% Similarity=1.119 Sum_probs=200.0
Q ss_pred CcccCCCCCccccchHHHHHHHHHcCCCCCCCCchhhhhhhcchhhcc--cccCCccEEEEEEEEeeeeeeEEEcCCCCc
Q 016587 149 CYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIK--EEEGEGCNIYGFLEVNKVAGNFHFAPGKSF 226 (386)
Q Consensus 149 Cyga~~~~~~CCntC~~v~~ay~~~~~~~~~~~~~~qc~~~~~~~~~~--~~~~egCri~G~l~VnkV~Gnfhi~~g~~~ 226 (386)
||||+.++.+|||||+||++||++++|.+++++.|+||.++ +.++++ ...+|||||+|++.||||+|||||+||+++
T Consensus 1 CYga~~~~~~CCnTC~~V~~ay~~~~w~~~~~~~~eQC~~~-~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~ 79 (222)
T PF07970_consen 1 CYGAETEEGKCCNTCEDVREAYRKKGWAFPDLENIEQCRRE-YVKKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSF 79 (222)
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHhCCCCCCccccccccch-hhhhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchh
Confidence 99999888999999999999999999999999999999998 544443 335699999999999999999999999999
Q ss_pred CCCCceeeeeccccCC-CcccceEeeeeeccCCCCCCCCCCCCceee--ecCCceeEEEEEEEEEeEEEeCCCceEEeee
Q 016587 227 HQSGVHVHDILAFQRD-SFNISHKINKLAFGEHFPGVVNPLDGVRWT--QETPSGMYQYFIKVVPTVYTDVSGHTIQSNQ 303 (386)
Q Consensus 227 ~~~~~h~h~~~~~~~~-~~N~SH~I~~lsFG~~~pg~~~PLdg~~~i--~~~~~~~~~Y~lkVVPT~y~~~~~~~~~t~Q 303 (386)
...+.|+||+..+... .+|+||+|||||||+++|+..|||||..++ ++....+|+||||||||+|...++..++|||
T Consensus 80 ~~~~~h~hd~~~~~~~~~~N~SH~I~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~t~q 159 (222)
T PF07970_consen 80 QQDGGHIHDLSPFDDEPKFNFSHTINHLSFGEEIPGIVNPLDGTQKIVQTDNGNYMYQYFLKVVPTTYEDLDGFSIETYQ 159 (222)
T ss_pred ccCCcceeehhhhccccCCCCCeEEEEEEeccccccccccccCccccccCCCCceeEEEEEEEeeeeeEecccccccccc
Confidence 8889999999887765 899999999999999999999999999984 5667799999999999999998887679999
Q ss_pred eeEEEEeeeccCCCCCCcceEEEEEeceeeEEEEEeeeccHHHHHHhhhhhhcchhhHHHHHH
Q 016587 304 FSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIID 366 (386)
Q Consensus 304 YSvt~~~~~~~~~~~~~~Pgi~F~Yd~SPi~V~~~e~~~~~~~flt~lcaIiGGvftv~glid 366 (386)
||||++.+.+......++|||||+||||||+|+++|+|+||+||||+||||||||||++||||
T Consensus 160 Ysvt~~~~~~~~~~~~~~PGI~F~Yd~SPi~v~~~~~r~s~~~flt~lcaIiGGvftv~gliD 222 (222)
T PF07970_consen 160 YSVTEHSRPLNGGSSGGLPGIFFKYDFSPIMVVITEDRKSFLHFLTRLCAIIGGVFTVAGLID 222 (222)
T ss_pred ccceeeeeeccCCCCCCCceEEEEEeceeEEEEEEEecCCHHHHHHHHHHHhchHheEEEecC
Confidence 999999998865544689999999999999999999999999999999999999999999998
No 3
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=100.00 E-value=6e-33 Score=225.10 Aligned_cols=96 Identities=49% Similarity=0.909 Sum_probs=93.9
Q ss_pred hcccccCCCCCCCCceeeeccccEehhhHHHHHHHHHHHHhhhccceeeEEEEEEecCCCceeEEEEEEEeCccCCceeE
Q 016587 7 KIRSLDAYPKINEDFYSRTFSGGVITLVSSIVMLLLFFSELRLYLNAVTETKLLVDTSRGETLRINFDVTFPALPCSILS 86 (386)
Q Consensus 7 ~lk~~D~F~K~~~~~~~~T~~GgivSii~~~ii~~L~~~E~~~y~~~~~~~~l~VD~~~~~~l~in~dItfp~~pC~~l~ 86 (386)
+||+||+|||++++++++|.+||++||+++++|++|+++|+.+|+++++++++.||++.+++|+||||||||+|||++|+
T Consensus 1 ~lk~~D~F~K~~~~~~~~T~~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~~~~~VD~~~~~~l~in~ditf~~~pC~~l~ 80 (96)
T PF13850_consen 1 KLKRFDAFPKVPEDLREKTSSGGIISIITIVLIVILFISELYSYLSGEIKYQLVVDTSRDEKLQINFDITFPHMPCDFLS 80 (96)
T ss_pred CcceeccCCCCChHheeeccCChHHHHHHHHHHHHHHHHHHHHHcccceeEEEEEcCCCCceEEEEEEEEECCCccCeee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEecCCceeecccc
Q 016587 87 VDAMDISGEQHLDVKH 102 (386)
Q Consensus 87 vDv~D~~G~~~~~~~~ 102 (386)
+|++|++|+++.|++|
T Consensus 81 vDv~D~~G~~~~dv~h 96 (96)
T PF13850_consen 81 VDVQDASGDHQLDVTH 96 (96)
T ss_pred eEeEccCCCeeccccC
Confidence 9999999999999875
No 4
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=44.07 E-value=12 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.3
Q ss_pred EeeeccHHHHHHhhhhhhcchhhHHHHHHHH
Q 016587 338 TEEHVSFLHFLTNVCAIVGGVFTVSGIIDAF 368 (386)
Q Consensus 338 ~e~~~~~~~flt~lcaIiGGvftv~glid~~ 368 (386)
..+|+.|+...|...|-+|++.++.-+|+++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3568889999999999999999998888764
No 5
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=8.7 Score=35.17 Aligned_cols=11 Identities=55% Similarity=1.382 Sum_probs=9.4
Q ss_pred CCccCCCcccC
Q 016587 143 ETYCGSCYGAE 153 (386)
Q Consensus 143 ~~~cg~Cyga~ 153 (386)
++-||||||+.
T Consensus 9 DPmCgWCyGa~ 19 (212)
T COG3531 9 DPMCGWCYGAA 19 (212)
T ss_pred CcchhhhhCcc
Confidence 46799999996
No 6
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=34.43 E-value=37 Score=33.79 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=28.4
Q ss_pred EEEEeceeeEEEEEeeeccHHHHHHhhhhhhcchhhHHHHHH
Q 016587 325 FFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIID 366 (386)
Q Consensus 325 ~F~Yd~SPi~V~~~e~~~~~~~flt~lcaIiGGvftv~glid 366 (386)
-|+|+.+|-.=+-+ ..|=-.+++-+.++|||++.+...+=
T Consensus 298 ~yRYl~~P~~Pvkr--d~PrrA~ilil~~LiGgm~g~g~vL~ 337 (347)
T COG3765 298 TYRYLQKPTLPVKR--DSPRRAIILILGALIGGMLGAGVVLL 337 (347)
T ss_pred EEEecCCCCCCCcC--CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666544332 24556889999999999999887763
No 7
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=30.48 E-value=1.7e+02 Score=24.07 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhccceeeE-EEEEEecCCCceeEEEEEEEeC
Q 016587 36 SIVMLLLFFSELRLYLNAVTE-TKLLVDTSRGETLRINFDVTFP 78 (386)
Q Consensus 36 ~~ii~~L~~~E~~~y~~~~~~-~~l~VD~~~~~~l~in~dItfp 78 (386)
+++++++.|.-+..+-.+++. +...-+...++.+.|.|+++-|
T Consensus 15 vv~~~~~~w~~~~~~~~~~v~~~~~gf~vv~d~~v~v~f~Vtr~ 58 (112)
T PF14155_consen 15 VVAGAVVAWFGYSQFGSPPVSAEVIGFEVVDDSTVEVTFDVTRD 58 (112)
T ss_pred HHHHHHHhHhhhhhccCCCceEEEEEEEECCCCEEEEEEEEEEC
Confidence 333344444444434455543 3344455557889999999975
No 8
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=27.14 E-value=49 Score=30.96 Aligned_cols=32 Identities=28% Similarity=0.689 Sum_probs=24.7
Q ss_pred ccCCCcccCCCCCcc--ccchHHHHHHHHHcCCCC
Q 016587 145 YCGSCYGAESSDEDC--CNNCEEVREAYRKKGWAL 177 (386)
Q Consensus 145 ~cg~Cyga~~~~~~C--CntC~~v~~ay~~~~~~~ 177 (386)
+--|||...... .| |.+|....++|+..++.-
T Consensus 182 ~T~SCY~g~~~~-~CG~C~sC~~R~~af~~~g~~d 215 (222)
T COG0603 182 LTWSCYNGGEGD-HCGECESCVLRERAFKEAGLED 215 (222)
T ss_pred hceEEeCCCCCC-CCCCCHHHHHHHHHHHHhCCcc
Confidence 456899886442 55 999999999999988543
No 9
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=62 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=18.8
Q ss_pred cHHHHHHhhhhhhcchhhHH-HHHH
Q 016587 343 SFLHFLTNVCAIVGGVFTVS-GIID 366 (386)
Q Consensus 343 ~~~~flt~lcaIiGGvftv~-glid 366 (386)
=|+.|+.|+.||+||++... |+++
T Consensus 26 Ww~r~l~rl~gilgaf~~~~fGvf~ 50 (175)
T KOG4085|consen 26 WWYRWLCRLSGILGAFSCAIFGVFN 50 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999998754 4433
No 10
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=26.20 E-value=1e+02 Score=29.88 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=25.9
Q ss_pred EEeeeccHHHH---HHhhhhhhcchhhHHHHHHHHHHH
Q 016587 337 FTEEHVSFLHF---LTNVCAIVGGVFTVSGIIDAFIYH 371 (386)
Q Consensus 337 ~~e~~~~~~~f---lt~lcaIiGGvftv~glid~~~~~ 371 (386)
+..+.+.+.+. ++++|+++||.|++.+|+=-++..
T Consensus 230 ~~~~~~~l~~~~~~~~g~~~v~~G~~~lL~LFc~l~~~ 267 (276)
T PF07413_consen 230 LRVDYRALGHWLAALIGMFFVASGAFMLLSLFCCLSIW 267 (276)
T ss_pred EecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444555555 899999999999999998655544
No 11
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.71 E-value=62 Score=24.43 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=17.7
Q ss_pred hhhhcchh-hHHHHHHHHHHHHH
Q 016587 352 CAIVGGVF-TVSGIIDAFIYHGQ 373 (386)
Q Consensus 352 caIiGGvf-tv~glid~~~~~~~ 373 (386)
.||+||++ ++++++-.+.|+..
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhh
Confidence 47889877 88899999888743
No 12
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=21.90 E-value=74 Score=24.61 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhhcchhhHHHHH
Q 016587 344 FLHFLTNVCAIVGGVFTVSGII 365 (386)
Q Consensus 344 ~~~flt~lcaIiGGvftv~gli 365 (386)
|.+|+..+.-.++|+.-++|+|
T Consensus 40 wlqfl~G~~lf~~G~~Fi~GfI 61 (77)
T PF11118_consen 40 WLQFLAGLLLFAIGVGFIAGFI 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999986
No 13
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=21.70 E-value=69 Score=27.48 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred cCCccEEEEEEEEeeeeeeEEEc
Q 016587 199 EGEGCNIYGFLEVNKVAGNFHFA 221 (386)
Q Consensus 199 ~~egCri~G~l~VnkV~Gnfhi~ 221 (386)
..|.|.+.|+|..+++-|.+--+
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~ 52 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKA 52 (136)
T ss_pred EcccceEEeEEEehhEecceeEE
Confidence 58999999999999999998665
Done!