Query 016587
Match_columns 386
No_of_seqs 110 out of 542
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 26.0 30 0.001 22.8 1.6 18 352-369 15-32 (44)
2 2l2t_A Receptor tyrosine-prote 19.5 46 0.0016 22.0 1.5 17 352-368 14-30 (44)
3 2lqo_A Putative glutaredoxin R 16.2 87 0.003 23.5 2.6 22 157-178 11-32 (92)
4 1oaz_A Thioredoxin 1; immune s 16.0 47 0.0016 25.8 1.1 31 141-171 28-58 (123)
5 1r7h_A NRDH-redoxin; thioredox 14.7 86 0.0029 21.3 2.2 21 157-177 8-28 (75)
6 1h75_A Glutaredoxin-like prote 14.4 88 0.003 21.8 2.2 21 157-177 8-28 (81)
7 2l9u_A Receptor tyrosine-prote 13.2 1.1E+02 0.0037 19.1 1.9 25 30-54 9-33 (40)
8 1ilo_A Conserved hypothetical 12.6 1E+02 0.0035 20.9 2.1 15 158-172 9-23 (77)
9 1y29_A Huwentoxin-X; A double- 12.4 94 0.0032 18.1 1.3 14 149-163 9-22 (28)
10 3qmx_A Glutaredoxin A, glutare 11.6 1.1E+02 0.0037 23.0 2.0 22 157-178 23-44 (99)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.00 E-value=30 Score=22.84 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=11.8
Q ss_pred hhhhcchhhHHHHHHHHH
Q 016587 352 CAIVGGVFTVSGIIDAFI 369 (386)
Q Consensus 352 caIiGGvftv~glid~~~ 369 (386)
.++|||++.++-++=.++
T Consensus 15 ~gVVgGv~~~~ii~~~~~ 32 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIG 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 467888887776664433
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.53 E-value=46 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.5
Q ss_pred hhhhcchhhHHHHHHHH
Q 016587 352 CAIVGGVFTVSGIIDAF 368 (386)
Q Consensus 352 caIiGGvftv~glid~~ 368 (386)
.++|||++.++-++=.+
T Consensus 14 ~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTF 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHH
Confidence 46788888877666443
No 3
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=16.17 E-value=87 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.6
Q ss_pred CccccchHHHHHHHHHcCCCCC
Q 016587 157 EDCCNNCEEVREAYRKKGWALS 178 (386)
Q Consensus 157 ~~CCntC~~v~~ay~~~~~~~~ 178 (386)
..+|..|..+++..+++|.++.
T Consensus 11 ~~~Cp~C~~aK~~L~~~gi~y~ 32 (92)
T 2lqo_A 11 TSWCGYCLRLKTALTANRIAYD 32 (92)
T ss_dssp CTTCSSHHHHHHHHHHTTCCCE
T ss_pred CCCCHhHHHHHHHHHhcCCceE
Confidence 3688999999999999998765
No 4
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=16.01 E-value=47 Score=25.83 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=22.3
Q ss_pred cCCCccCCCcccCCCCCccccchHHHHHHHH
Q 016587 141 HNETYCGSCYGAESSDEDCCNNCEEVREAYR 171 (386)
Q Consensus 141 ~~~~~cg~Cyga~~~~~~CCntC~~v~~ay~ 171 (386)
...+||++|..........|+.|+.+.+.+.
T Consensus 28 F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~ 58 (123)
T 1oaz_A 28 FWAEWCGPIEESDDRRYDLVGPCKMIAPILD 58 (123)
T ss_dssp EECSSCSCBSSSTTSCCSCCCCCCTTHHHHT
T ss_pred EECCCCccccccccccccCCCCcHHHHHHHH
Confidence 3467999998876655566777887777654
No 5
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=14.68 E-value=86 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=17.1
Q ss_pred CccccchHHHHHHHHHcCCCC
Q 016587 157 EDCCNNCEEVREAYRKKGWAL 177 (386)
Q Consensus 157 ~~CCntC~~v~~ay~~~~~~~ 177 (386)
..+|..|+.++...++.+..+
T Consensus 8 ~~~C~~C~~~~~~l~~~~i~~ 28 (75)
T 1r7h_A 8 KPACVQCTATKKALDRAGLAY 28 (75)
T ss_dssp CTTCHHHHHHHHHHHHTTCCC
T ss_pred CCCChHHHHHHHHHHHcCCCc
Confidence 358999999999999887554
No 6
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=14.35 E-value=88 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.673 Sum_probs=17.1
Q ss_pred CccccchHHHHHHHHHcCCCC
Q 016587 157 EDCCNNCEEVREAYRKKGWAL 177 (386)
Q Consensus 157 ~~CCntC~~v~~ay~~~~~~~ 177 (386)
..||..|+.+++..++.+..+
T Consensus 8 ~~~C~~C~~~~~~l~~~~i~~ 28 (81)
T 1h75_A 8 RNDCVQCHATKRAMENRGFDF 28 (81)
T ss_dssp CTTCHHHHHHHHHHHHTTCCC
T ss_pred CCCChhHHHHHHHHHHCCCCe
Confidence 358999999999999877554
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=13.24 E-value=1.1e+02 Score=19.07 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=20.0
Q ss_pred EehhhHHHHHHHHHHHHhhhcccee
Q 016587 30 VITLVSSIVMLLLFFSELRLYLNAV 54 (386)
Q Consensus 30 ivSii~~~ii~~L~~~E~~~y~~~~ 54 (386)
.+|+++.+++++|++.-..-|++..
T Consensus 9 alt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEccc
Confidence 3677888888899998888888754
No 8
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=12.64 E-value=1e+02 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=10.3
Q ss_pred ccccchHHHHHHHHH
Q 016587 158 DCCNNCEEVREAYRK 172 (386)
Q Consensus 158 ~CCntC~~v~~ay~~ 172 (386)
.||..|+...+.+++
T Consensus 9 ~wC~~C~~~~~~l~~ 23 (77)
T 1ilo_A 9 TGCANCQMLEKNARE 23 (77)
T ss_dssp SSSSTTHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 477778877776553
No 9
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=12.36 E-value=94 Score=18.13 Aligned_cols=14 Identities=50% Similarity=1.383 Sum_probs=7.3
Q ss_pred CcccCCCCCccccch
Q 016587 149 CYGAESSDEDCCNNC 163 (386)
Q Consensus 149 Cyga~~~~~~CCntC 163 (386)
||++- ..-+||-.|
T Consensus 9 C~~~~-~riPCCG~C 22 (28)
T 1y29_A 9 CYGAT-QKIPCCGVC 22 (28)
T ss_dssp CCTTC-CSCCBSSCB
T ss_pred ccCCc-ccccccccc
Confidence 55543 344566555
No 10
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=11.62 E-value=1.1e+02 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.5
Q ss_pred CccccchHHHHHHHHHcCCCCC
Q 016587 157 EDCCNNCEEVREAYRKKGWALS 178 (386)
Q Consensus 157 ~~CCntC~~v~~ay~~~~~~~~ 178 (386)
..+|..|+.+++..++.+..+.
T Consensus 23 ~~~Cp~C~~ak~~L~~~~i~y~ 44 (99)
T 3qmx_A 23 WSTCPFCMRALALLKRKGVEFQ 44 (99)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCE
T ss_pred cCCChhHHHHHHHHHHCCCCCE
Confidence 4689999999999999886654
Done!