BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016589
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 14/274 (5%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 47 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 105
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEG 229
V V D ++ ++ + P +P FL GHS GGA+ + + AA P G
Sbjct: 106 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAI----LTAAERP---GHFAG 158
Query: 230 IVLSAPALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPL 287
+VL +P + P V A + +LV+P G V +SR+ + SDPL
Sbjct: 159 MVLISPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPL 216
Query: 288 VYTGPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFK 347
+ ++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K
Sbjct: 217 ICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDK 276
Query: 348 DIKLYEGLLHDLLFELER--DEVAQDIIVWLEKK 379
+K+YEG H L EL + V +I +W+ ++
Sbjct: 277 TLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQR 310
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 14/274 (5%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 48 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 106
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEG 229
V V D ++ ++ + P +P FL GHS GGA+ + + AA P G
Sbjct: 107 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAI----LTAAERP---GHFAG 159
Query: 230 IVLSAPALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPL 287
+VL +P + P V A + +LV+P G V +SR+ + SDPL
Sbjct: 160 MVLISPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPL 217
Query: 288 VYTGPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFK 347
+ ++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K
Sbjct: 218 ICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDK 277
Query: 348 DIKLYEGLLHDLLFELER--DEVAQDIIVWLEKK 379
+K+YEG H L EL + V +I +W+ ++
Sbjct: 278 TLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQR 311
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 137/274 (50%), Gaps = 14/274 (5%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 30 LFCRYWAP-TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERM 88
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEG 229
V V D ++ ++ + P +P FL GHS GGA+ + + AA P G
Sbjct: 89 VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAI----LTAAERP---GHFAG 141
Query: 230 IVLSAPALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPL 287
+VL +P + P V A + + V+P G V +SR+ + SDPL
Sbjct: 142 MVLISPLVLANPESATTFKVLAAKVLNSVLPNLS-SGPIDSSV-LSRNKTEVDIYNSDPL 199
Query: 288 VYTGPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFK 347
+ ++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K
Sbjct: 200 ICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDK 259
Query: 348 DIKLYEGLLHDLLFELER--DEVAQDIIVWLEKK 379
+K+YEG H L EL + V +I +W+ ++
Sbjct: 260 TLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQR 293
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 135/274 (49%), Gaps = 14/274 (5%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
LFCR W P +G K ++ + HG EHSGRY + AR L + V+A D +GHG S+G
Sbjct: 47 LFCRYWKP-TGTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQSEGERX 105
Query: 170 YVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEG 229
V V D ++ + + P +P FL GHS GGA+ + + AA P G
Sbjct: 106 VVSDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAI----LTAAERP---GHFAG 158
Query: 230 IVLSAPALRVEPAHPIVGAV--APLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPL 287
VL +P + P V A + +LV+P G V +SR+ + SDPL
Sbjct: 159 XVLISPLVLANPESATTFKVLAAKVLNLVLPNLSL-GPIDSSV-LSRNKTEVDIYNSDPL 216
Query: 288 VYTGPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFK 347
+ ++V G ++L S ++R ++VPF +L G+ D++ D + L A S+ K
Sbjct: 217 ICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDK 276
Query: 348 DIKLYEGLLHDLLFELER--DEVAQDIIVWLEKK 379
+K+YEG H L EL + V +I W+ ++
Sbjct: 277 TLKIYEGAYHVLHKELPEVTNSVFHEINXWVSQR 310
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+ +
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEI 102
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEGIVLSAPAL 237
D A L +K + +L GHS GG V + A YP +++ +VL APA
Sbjct: 103 -EDANAILNYVKTDPHVRNIYLVGHSQGGVVAS----MLAGLYPD---LIKKVVLLAPAA 154
Query: 238 RVEPAHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRT 297
+ K N +GV + D + D + +R+
Sbjct: 155 TL-------------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQ 195
Query: 298 GHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 336
I +S+ + P ++HGT D V P AS+
Sbjct: 196 QLPIYEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNE- 101
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEGIVLSAPAL 237
+ D A L +K + +L GH+ GG V + A YP +++ +VL APA
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVA----SMLAGLYPD---LIKKVVLLAPAA 154
Query: 238 RVEPAHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRT 297
+ K N +GV + D + D + +R+
Sbjct: 155 TL-------------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQ 195
Query: 298 GHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 336
I +S+ + P ++HGT D V P AS+
Sbjct: 196 QLPIYEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 120 GELKGILIIIHGL--NEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
GE+ + II HG N ++ + A L N D+ GHG SDG + L+
Sbjct: 43 GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNE- 101
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEGIVLSAPAL 237
+ D A L +K + +L GH+ GG V + A YP +++ +VL APA
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVAS----MLAGLYPD---LIKKVVLLAPAA 154
Query: 238 RVEPAHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRT 297
+ K N +GV + D + D + +R+
Sbjct: 155 TL-------------------KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQ 195
Query: 298 GHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQ 336
I +S+ + P ++HGT D V P AS+
Sbjct: 196 QLPIYEVSAQFTK-------PVCLIHGTDDTVVSPNASK 227
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 295 VRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEG 354
++T + L + ++ + + P FV+ D++ +P ++ +YNE S K IK YE
Sbjct: 161 MKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQ 220
Query: 355 LLHDLLFELERDEVAQDIIVWLE 377
H + + E+D++ +DI +LE
Sbjct: 221 SGHVITLDQEKDQLHEDIYAFLE 243
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 315 VSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIV 374
+ P FV+ D++ +P ++ +YNE S K IK YE H + + E+D++ +DI
Sbjct: 180 IYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 239
Query: 375 WLE 377
+LE
Sbjct: 240 FLE 242
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 315 VSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIV 374
V P FV+ D+ +P ++ +YNE S K IK YE H + + E+D++ +DI
Sbjct: 181 VYAPTFVVQARHDEXINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 240
Query: 375 WLE 377
+LE
Sbjct: 241 FLE 243
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 40/286 (13%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGL-H 168
+F + W P + ++ HG S + + F V A D GHG S +
Sbjct: 16 IFYKDWGPRDAK---VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQVWD 72
Query: 169 GYVPSLDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLK-------RTFVQA---A 218
G+ +DH D A +EK+ T GHSTGG V++ R +A +
Sbjct: 73 GH--DMDHYADDAAAVVEKLG----THGAMHVGHSTGGGEVVRYIARHGERNVSKAVLIS 126
Query: 219 SYPHIEAMLEGIVLSAPALRVEPAHPIVGAVAPLFSLVVPKYQFKGANKRGVPVSRDPAA 278
S P + P + V A F L VP F G N+ G
Sbjct: 127 SVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRPG--------- 177
Query: 279 LLAKYSDPLVYT-------GPIRVRTGHEILRLSSYLKRNFKSVSVPFFVLHGTGDKVTD 331
AK S+ ++Y G + + + + + K +++P V+HG D+V
Sbjct: 178 --AKPSEGVIYNWWRQGMMGSTKAQYDGIVAFSQTDFTNDLKGITIPVLVIHGDDDQVV- 234
Query: 332 PLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDEVAQDIIVWLE 377
P A + + + + Y+G H + D+V D++ +L+
Sbjct: 235 PYADSGVLSAKLVKNGKLITYKGAPHGIP-TTHADKVNADLLEFLQ 279
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 104/274 (37%), Gaps = 49/274 (17%)
Query: 110 LFCRSWIPVSGELKGILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHG 169
+F + W P G ++ HG + + S + V A D GHG SD
Sbjct: 11 IFYKDWGPRDGL---PVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSD---- 63
Query: 170 YVPS----LDHVVADTGAFLEKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEA 225
PS +D AD A E + L GHSTGG V + +V A +
Sbjct: 64 -QPSTGHDMDTYAADVAALTEALDLRG----AVHIGHSTGGGEVAR--YVARAEPGRVA- 115
Query: 226 MLEGIVLSA--PALRVEPAHP-------------IVGAVAPLFSLVVPKYQFKGANKRGV 270
+ +++SA P + +P + A F + VP F G N+ G
Sbjct: 116 --KAVLVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGA 173
Query: 271 PVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRLSSYLKRNF----KSVSVPFFVLHGTG 326
VS+ L+ D G + H ++++ + +F K + VP V HGT
Sbjct: 174 TVSQ---GLI----DHWWLQGMMGAANAHYEC-IAAFSETDFTDDLKRIDVPVLVAHGTD 225
Query: 327 DKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLL 360
D+V P A + +K YEGL H +L
Sbjct: 226 DQVV-PYADAAPKSAELLANATLKSYEGLPHGML 258
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 126 LIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAFL 185
+++ HG N +G + + L + V A+D +G S Y S + A+T A L
Sbjct: 49 ILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALL 108
Query: 186 EKIKLENPTVPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEGIVLSAP 235
E++ + +V GHS GG + + + YP +E +VL P
Sbjct: 109 ERLGVARASV----IGHSXGGXLATRYALL----YPR---QVERLVLVNP 147
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 43/261 (16%)
Query: 125 ILIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAF 184
+++ IHG+ E + + A L + + V A D GHG S L V S + A
Sbjct: 28 VVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE-MVTSYSSLTFL--AQ 84
Query: 185 LEKIKLENPTVPCFLFGHSTGGAVV----------LKRTFVQAASYPHIEAMLEGIVLSA 234
++++ E P P L GHS G + +K + P E+ E V
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
Query: 235 PA----LRVEPAHPIVGAVAPLFSLVVPKYQFKGANKRGVP-VSRDPAALLA-KYSDP-- 286
L P HPI VA S + ++ +P +S + + +LA + + P
Sbjct: 145 TTCLDYLSSTPQHPIFPDVATAASRL----------RQAIPSLSEEFSYILAQRITQPNQ 194
Query: 287 ----LVYTGPIRVRTGHEILRL----SSYLKRNFKSVSVPFFVLHGTGDKVTDPLASQDL 338
+ IR R+ + L S YL+ KS+ VP +++G K+ P +DL
Sbjct: 195 GGVRWSWDAIIRTRSILGLNNLPGGRSQYLEM-LKSIQVPTTLVYGDSSKLNRP---EDL 250
Query: 339 YNEAASRFKDIKLYEGLLHDL 359
+ + + +++ H+L
Sbjct: 251 QQQKMTMTQAKRVFLSGGHNL 271
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 308 LKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEGLLHDLLFELERDE 367
+ K + VP V+HG D+V P+ + + + A + +K+Y G H L + +D+
Sbjct: 205 FTEDLKKIDVPTLVVHGDADQVV-PIEASGIASAALVKGSTLKIYSGAPHGLT-DTHKDQ 262
Query: 368 VAQDIIVWLE 377
+ D++ +++
Sbjct: 263 LNADLLAFIK 272
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 293 IRVRTGHEILRLSSYLKRNFKSVSVPF-FVLHGTGDKVTDPLASQDLYNEAASRFKDIKL 351
+R R GH +L +L NF++ + F +LHG TD L + ++NE + F D+
Sbjct: 29 VRARIGHFFHKLYVFLSTNFENNTNMFQILLHGLKVWFTD-LGQETVFNEDPNAFIDVDF 87
Query: 352 YEGL 355
E +
Sbjct: 88 LENV 91
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 119 SGELKGILIIIHGLNEHSGRYAQFARQLTS-CNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
SG +L+++HG + +A F + S + A+D HG + + S + +
Sbjct: 34 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 93
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVL 210
D G +E + + P P L GHS GGA+ +
Sbjct: 94 AKDVGNVVEAMYGDLPP-PIMLIGHSMGGAIAV 125
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 119 SGELKGILIIIHGLNEHSGRYAQFARQLTS-CNFGVYAMDWIGHGGSDGLHGYVPSLDHV 177
SG +L+++HG + +A F + S + A+D HG + + S + +
Sbjct: 38 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 97
Query: 178 VADTGAFLEKIKLENPTVPCFLFGHSTGGAVVL 210
D G +E + + P P L GH+ GGA+ +
Sbjct: 98 AKDVGNVVEAMYGDLPP-PIMLIGHAMGGAIAV 129
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 289 YTGPIRVRTGHEILRLSSYLK--RNFK------SVSVPFFVLHGTGDKVTDPLASQDLYN 340
YT R I+ LS+YL NFK + +P V HGT D+V + DL +
Sbjct: 148 YTAITSQRKLGGIMALSTYLPAWDNFKGKITSINKGLPILVCHGTDDQVLPEVLGHDLSD 207
Query: 341 E-AASRF-KDIKLYEGLLHDLLFELERD 366
+ S F + K Y G+ H + E +D
Sbjct: 208 KLKVSGFANEYKHYVGMQHSVCMEEIKD 235
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 195 VPCFLFGHSTGGAVVLKRTFVQAASYPHIEAMLEGIVLSAPALRVEPAHPIVGAV--APL 252
+P G + GGA + R +YP A++ + +L +P VG++ L
Sbjct: 139 IPIAQLGCAAGGAAI-NRAHDFCTAYPEANALI--VACEFCSLCYQPTDLGVGSLLCNGL 195
Query: 253 FSLVVPKYQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILR--------- 303
F + +G GV + R+ + L+ K D ++Y ++ H +L
Sbjct: 196 FGDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDWIMYD--VKATGFHFLLDKRVPATMEP 253
Query: 304 LSSYLKR-----NFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYE 353
L+ LK + + + F+++H G ++ D L++ + A RF L E
Sbjct: 254 LAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTE 308
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 301 ILRLSSY------LKRNFKSVSVPFFVLHGTGDKVTDPLASQDLYNEAASRFKDIKLYEG 354
+L LS+Y L + + +P LHG+ D V DP + ++ ++ ++ ++
Sbjct: 145 VLALSTYAPTFDDLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHD- 203
Query: 355 LLHDLLFELERDEVAQDIIVWLEKKL 380
+ + E+ +E+ DI WL K+L
Sbjct: 204 --YPMGHEVSLEEI-HDIGAWLRKRL 226
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 126 LIIIHGLNEHSGRYAQFARQLTSCNFGVYAMDWIGHGGSDG-----LHGYVPSLDHVVAD 180
L+ +HG + + + + L ++ +D GHG S G ++GY+ ++ + + +
Sbjct: 19 LLFVHGSGCNLKIFGELEKYLE--DYNCILLDLKGHGESKGQCPSTVYGYIDNVANFITN 76
Query: 181 TGAFLEKIKLENPTVPCFLFGHSTGGAVVL 210
+ + +N T L G+S GGA+VL
Sbjct: 77 SEVTKHQ---KNIT----LIGYSXGGAIVL 99
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 260 YQFKGANKRGVPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRLSS--------YLKR- 310
Y + N G P DP +L S +Y P+RVRTG E R Y+ R
Sbjct: 210 YDYDVYNDLGNPDGGDPRPILGGCS---IYPYPLRVRTGRERTRTDPNSEKPGEVYVPRD 266
Query: 311 -NFKSVSVPFFVLHGTGDKVTD--PLASQDLY-----NEAASRFKDIK-LYEG 354
NF + F+ +G D PL ++ + F+D++ LYEG
Sbjct: 267 ENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEG 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,360,882
Number of Sequences: 62578
Number of extensions: 476282
Number of successful extensions: 932
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 34
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)