Query 016590
Match_columns 386
No_of_seqs 167 out of 1161
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xb2_B EF-TS, elongation facto 100.0 9.5E-82 3.3E-86 612.4 27.6 261 77-386 4-279 (291)
2 3avx_A Elongation factor TS, e 100.0 6E-80 2.1E-84 684.4 15.9 261 79-386 7-267 (1289)
3 1aip_C EF-TS, elongation facto 100.0 1.2E-76 4E-81 544.9 21.0 193 75-381 1-195 (196)
4 1tfe_A Elongation factor TS; 1 100.0 2.3E-45 7.8E-50 324.8 13.1 141 239-384 3-144 (145)
5 2cp9_A EF-TS, EF-TSMT, elongat 99.8 2.2E-20 7.7E-25 143.0 6.2 55 78-132 10-64 (64)
6 1wj7_A Hypothetical protein (R 97.5 0.00012 4.1E-09 60.9 6.0 39 79-117 41-79 (104)
7 1z96_A DNA-damage, UBA-domain 97.5 0.00015 5.2E-09 49.3 5.3 34 79-113 6-39 (40)
8 2g3q_A Protein YBL047C; endocy 97.1 0.00036 1.2E-08 48.6 3.8 36 79-115 6-41 (43)
9 1xb2_B EF-TS, elongation facto 97.0 0.0018 6.1E-08 62.9 8.4 102 239-381 62-166 (291)
10 2dah_A Ubiquilin-3; UBA domain 96.9 0.0015 5.2E-08 48.0 5.4 39 78-117 10-49 (54)
11 2knz_A Ubiquilin-4; cytoplasm, 96.9 0.0019 6.5E-08 47.1 5.8 40 77-117 11-51 (53)
12 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.0021 7.3E-08 46.7 5.5 36 78-114 13-49 (52)
13 2dak_A Ubiquitin carboxyl-term 96.7 0.0023 8E-08 48.2 5.2 37 79-116 11-47 (63)
14 1vej_A Riken cDNA 4931431F19; 96.6 0.0035 1.2E-07 49.0 6.1 37 78-115 30-67 (74)
15 1tfe_A Elongation factor TS; 1 96.6 0.0025 8.7E-08 55.8 5.7 101 129-237 1-141 (145)
16 2bwb_A Ubiquitin-like protein 96.5 0.0038 1.3E-07 44.3 5.0 36 78-114 8-44 (46)
17 2dna_A Unnamed protein product 96.5 0.0051 1.7E-07 47.2 5.9 40 78-117 20-59 (67)
18 1wr1_B Ubiquitin-like protein 96.4 0.0042 1.4E-07 46.3 5.1 37 78-115 18-55 (58)
19 1ify_A HHR23A, UV excision rep 96.4 0.0034 1.1E-07 45.1 4.4 36 79-115 10-45 (49)
20 1wji_A Tudor domain containing 96.4 0.0037 1.3E-07 47.3 4.7 37 79-116 11-47 (63)
21 2cpw_A CBL-interacting protein 96.3 0.0058 2E-07 46.3 5.4 36 79-115 21-57 (64)
22 2dag_A Ubiquitin carboxyl-term 96.0 0.0086 2.9E-07 46.6 5.0 37 79-116 11-48 (74)
23 2dai_A Ubadc1, ubiquitin assoc 95.9 0.011 3.7E-07 47.1 5.4 37 79-116 31-67 (83)
24 1vg5_A RSGI RUH-014, rhomboid 95.8 0.0094 3.2E-07 46.4 4.4 36 79-115 31-66 (73)
25 1wiv_A UBP14, ubiquitin-specif 95.7 0.016 5.6E-07 44.9 5.4 37 79-116 31-67 (73)
26 1whc_A RSGI RUH-027, UBA/UBX 3 95.6 0.011 3.9E-07 44.6 4.3 37 79-116 11-48 (64)
27 1tr8_A Conserved protein (MTH1 95.6 0.011 3.8E-07 48.9 4.6 36 78-113 66-101 (102)
28 2crn_A Ubash3A protein; compac 95.3 0.02 7E-07 43.3 4.6 37 79-116 11-48 (64)
29 2dkl_A Trinucleotide repeat co 95.2 0.027 9.2E-07 45.0 5.4 38 78-116 22-59 (85)
30 2ekk_A UBA domain from E3 ubiq 95.2 0.025 8.4E-07 39.9 4.6 35 79-115 11-45 (47)
31 1vek_A UBP14, ubiquitin-specif 95.1 0.032 1.1E-06 44.4 5.4 37 79-116 31-68 (84)
32 1veg_A NEDD8 ultimate buster-1 95.0 0.033 1.1E-06 44.4 5.4 37 79-116 31-67 (83)
33 1oai_A Nuclear RNA export fact 95.0 0.054 1.9E-06 40.3 6.1 39 77-115 7-45 (59)
34 4ae4_A Ubiquitin-associated pr 94.9 0.02 6.7E-07 48.5 3.9 41 75-116 74-114 (118)
35 2cwb_A Chimera of immunoglobul 94.8 0.033 1.1E-06 46.5 4.9 39 79-117 68-106 (108)
36 2lbc_A Ubiquitin carboxyl-term 94.7 0.035 1.2E-06 47.0 5.0 36 79-115 80-115 (126)
37 1wgn_A UBAP1, ubiquitin associ 94.7 0.019 6.5E-07 43.3 2.9 36 80-116 22-57 (63)
38 2jp7_A MRNA export factor MEX6 94.6 0.06 2.1E-06 39.9 5.4 39 77-115 6-44 (57)
39 3e21_A HFAF1, FAS-associated f 94.2 0.069 2.4E-06 37.8 4.8 34 78-111 6-40 (45)
40 1dv0_A DNA repair protein HHR2 93.7 0.022 7.5E-07 40.5 1.4 36 79-115 6-41 (47)
41 2lva_A Ubiquitin carboxyl-term 92.1 0.018 6.1E-07 49.0 0.0 40 79-118 20-60 (129)
42 4ae4_A Ubiquitin-associated pr 92.9 0.069 2.4E-06 45.1 3.6 37 79-116 10-46 (118)
43 2lbc_A Ubiquitin carboxyl-term 92.7 0.078 2.7E-06 44.8 3.6 37 79-116 5-42 (126)
44 1v92_A NSFL1 cofactor P47; 3-h 91.5 0.34 1.2E-05 33.4 5.2 37 79-115 7-43 (46)
45 1vdl_A Ubiquitin carboxyl-term 91.3 0.29 1E-05 38.2 5.0 39 79-117 26-65 (80)
46 2dam_A ETEA protein; KIAA0887, 91.0 0.27 9.3E-06 37.3 4.6 39 77-115 18-57 (67)
47 1aip_C EF-TS, elongation facto 90.8 0.25 8.5E-06 45.3 5.0 31 206-236 164-194 (196)
48 2cp8_A NEXT to BRCA1 gene 1 pr 90.3 0.59 2E-05 34.3 5.6 40 78-117 10-49 (54)
49 2dal_A Protein KIAA0794; FAS a 90.0 0.45 1.5E-05 35.4 4.9 40 78-117 16-55 (62)
50 2ooa_A E3 ubiquitin-protein li 88.5 0.55 1.9E-05 34.1 4.2 37 79-116 13-49 (52)
51 2d9s_A CBL E3 ubiquitin protei 88.1 0.6 2E-05 34.1 4.2 37 80-117 12-48 (53)
52 1otr_A Protein CUE2; protein-p 87.1 0.9 3.1E-05 32.6 4.7 38 79-116 6-44 (49)
53 2oo9_A E3 ubiquitin-protein li 86.3 0.82 2.8E-05 32.3 4.0 30 88-117 14-43 (46)
54 2dzl_A Protein FAM100B; UBA-li 85.6 1.1 3.9E-05 33.8 4.8 37 79-115 19-55 (66)
55 1wgl_A TOLL-interacting protei 85.1 1.2 4.2E-05 33.0 4.7 38 79-116 11-49 (59)
56 2juj_A E3 ubiquitin-protein li 83.5 1 3.5E-05 33.0 3.5 37 80-117 10-46 (56)
57 3avx_A Elongation factor TS, e 82.0 0.76 2.6E-05 52.4 3.6 48 238-292 58-106 (1289)
58 3k9o_A Ubiquitin-conjugating e 79.3 2.3 7.8E-05 38.4 5.2 37 78-115 164-200 (201)
59 1ctf_A Ribosomal protein L7/L1 78.3 1.8 6.3E-05 33.6 3.6 26 77-102 19-44 (74)
60 1oqy_A HHR23A, UV excision rep 77.8 0.85 2.9E-05 45.4 2.0 36 78-114 169-204 (368)
61 1jkg_B TAP; NTF2-like domain, 77.4 0.47 1.6E-05 44.6 0.0 38 77-114 198-235 (250)
62 2dhy_A CUE domain-containing p 75.9 4.3 0.00015 30.8 5.0 37 79-115 20-57 (67)
63 3k6g_A Telomeric repeat-bindin 74.2 6.9 0.00023 32.3 6.1 39 77-115 13-51 (111)
64 2cos_A Serine/threonine protei 69.7 2.9 9.9E-05 30.6 2.6 37 81-118 13-50 (54)
65 1dd3_A 50S ribosomal protein L 64.4 7.7 0.00026 33.1 4.6 40 59-104 58-97 (128)
66 3e46_A Ubiquitin-conjugating e 63.6 9.9 0.00034 35.8 5.7 37 77-114 215-251 (253)
67 1oqy_A HHR23A, UV excision rep 59.9 3.2 0.00011 41.2 1.7 38 78-116 326-363 (368)
68 2qsf_X RAD23, UV excision repa 59.1 12 0.00042 33.3 5.2 39 77-116 130-168 (171)
69 2zjq_5 50S ribosomal protein L 56.5 8.2 0.00028 32.7 3.4 36 60-101 57-92 (122)
70 2j01_L 50S ribosomal protein L 55.7 8.4 0.00029 32.7 3.3 36 60-101 60-95 (125)
71 2di0_A Activating signal coint 46.7 79 0.0027 24.2 7.2 54 75-128 11-65 (71)
72 3ihp_A Ubiquitin carboxyl-term 46.7 13 0.00044 40.7 3.9 35 80-115 723-757 (854)
73 2ftc_E L12MT, MRP-L12, 39S rib 45.5 15 0.00052 31.6 3.4 25 78-102 82-107 (137)
74 3bq3_A Defective in cullin ned 43.5 24 0.00083 33.5 4.8 40 79-118 17-56 (270)
75 2jml_A DNA binding domain/tran 43.3 12 0.0004 28.4 2.1 38 63-103 41-78 (81)
76 4dbg_B Ring finger protein 31; 42.3 22 0.00075 31.4 3.9 36 80-115 105-140 (162)
77 3huh_A Virulence protein STM31 41.0 22 0.00076 28.6 3.7 52 102-153 93-145 (152)
78 3hh0_A Transcriptional regulat 40.3 15 0.00053 31.3 2.6 49 63-115 39-87 (146)
79 3hdp_A Glyoxalase-I; glutathio 38.9 19 0.00064 28.2 2.8 45 105-149 87-131 (133)
80 3sgf_J 50S ribosomal protein L 37.4 7 0.00024 33.0 0.0 26 78-103 67-92 (121)
81 3gp4_A Transcriptional regulat 33.5 40 0.0014 28.4 4.2 50 62-115 36-88 (142)
82 1q02_A Sequestosome 1; helical 33.1 24 0.00083 25.5 2.2 38 79-116 9-50 (52)
83 3gpv_A Transcriptional regulat 31.3 36 0.0012 28.9 3.6 49 63-115 51-102 (148)
84 3r6a_A Uncharacterized protein 29.3 45 0.0015 27.3 3.7 57 104-163 74-130 (144)
85 3kol_A Oxidoreductase, glyoxal 20.7 81 0.0028 24.8 3.7 46 104-152 107-152 (156)
No 1
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00 E-value=9.5e-82 Score=612.41 Aligned_cols=261 Identities=26% Similarity=0.370 Sum_probs=225.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH----cccccccccccccccCCcEEEEecCCeEEEEEEeccc
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK----RGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET 152 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk----kG~akA~Kka~R~a~EGlV~~~~~~~~aalvElNCET 152 (386)
.+++||+||++||||||||||||+|+|||||+|++|||+ +||++|+||+||.|+||+|+++++++.|+||||||||
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET 83 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET 83 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence 468999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cceecchHHHHHHHHHHHHHHhhcCCCCCCCCCC--CC-ChhhhhccccCCCCCCCCCCCc--HHHHHHHHHHHhcceee
Q 016590 153 DFVSRNEIFQYLALALAKQALVAENVSQPVSGLF--PV-GPEYLEGLKLNLDHPKIGGETT--VQNAITEVAAIMGENVK 227 (386)
Q Consensus 153 DFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~--~l-~~e~l~~~~~~~~~~~~~~~~T--v~d~i~~~ia~iGENI~ 227 (386)
||||||+.|++|+++|+..++...+......... .+ +.+++..+++ .++.| |+|.+.++|++|||||.
T Consensus 84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-------~~~~t~tv~d~i~~~ia~iGEni~ 156 (291)
T 1xb2_B 84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPA-------GPEREGSLKDQLALAIGKLGENMI 156 (291)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBC-------CSSSCSBHHHHHHHHHHHHCSCEE
T ss_pred ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhccc-------ccCcchhHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999998765421111111 12 6777776653 23556 99999999999999999
Q ss_pred eeeeEEeeeCCCCeEEEEecCCCC------CCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCH
Q 016590 228 LRRGFLLSASSPGVVSTYLHTSPQ------SGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSA 301 (386)
Q Consensus 228 LrR~~~~~~~~~~~v~sY~H~~~~------~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~ 301 (386)
|||+..+..++++++++|+|+++. +++||||+||.+++.++. +.+.+++++||||||||+|.||++++|
T Consensus 157 lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~---~~l~~~ak~iAmHIaA~~P~~l~~~~v-- 231 (291)
T 1xb2_B 157 LKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSLDD-- 231 (291)
T ss_dssp EEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG---GGCHHHHHHHHHHHHHHCCSBCCCTTS--
T ss_pred HHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc---chHHHHHHHHHHHHHhcCCcccCHHHh--
Confidence 999999987667899999998743 577999999999975321 224589999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEec
Q 016590 302 DALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVG 381 (386)
Q Consensus 302 ~~le~Er~i~~~q~~~~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vG 381 (386)
.+ +||+|+|||+|+||+|+++||+|||++. +++|.+|+||+||
T Consensus 232 ---------------~~----------------gf~~E~~Ll~Q~fv~D~~~tV~~~l~~~------~i~V~~F~RfevG 274 (291)
T 1xb2_B 232 ---------------EP----------------GGEAETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECG 274 (291)
T ss_dssp ---------------CC----------------CGGGCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETT
T ss_pred ---------------hc----------------cchhheeeccCcccCCCCcCHHHHHHhC------CCEEEEEEEEEec
Confidence 11 2999999999999999999999999985 5999999999999
Q ss_pred ccccC
Q 016590 382 EGIRR 386 (386)
Q Consensus 382 Egiek 386 (386)
|||||
T Consensus 275 Egiek 279 (291)
T 1xb2_B 275 EGEDA 279 (291)
T ss_dssp CC---
T ss_pred Ccccc
Confidence 99986
No 2
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=6e-80 Score=684.42 Aligned_cols=261 Identities=35% Similarity=0.541 Sum_probs=243.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcccccccccccccccCCcEEEEecCCeEEEEEEeccccceecc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRN 158 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalvElNCETDFVArN 158 (386)
++||+||++||||||||||||+|+|||+|+|++||||+|+++|+||+||.|+||+|+++++++.||||||||||||||||
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNcETDFVAkn 86 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKD 86 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTHHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEESCHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhCcchhhHhcCccccCceEEEEEcCCEEEEEEEEccccceeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhhccccCCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeEEeeeCC
Q 016590 159 EIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238 (386)
Q Consensus 159 ~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~~~~~~~ 238 (386)
++|++||++||+.++..... +.|++... |+|.+.+++++|||||.|||+..++
T Consensus 87 ~~F~~l~~~ia~~~~~~~~~----------~~e~l~~~--------------v~~~~~~~ia~iGEni~lrR~~~~~--- 139 (1289)
T 3avx_A 87 AGFQAFADKVLDAAVAGKIT----------DVEVLKAQ--------------FEEERVALVAKIGENINIRRVAALE--- 139 (1289)
T ss_dssp HHHHHHHHHHHHHHHTTTCC----------CHHHHHHT--------------TSTTTTTTTTTTCSCCEEEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHhcCCC----------CHHHHHHH--------------HHHHHHHHHhhhccceEEeEEEEEE---
Confidence 99999999999999876533 34565532 5667788999999999999999996
Q ss_pred CCeEEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHHHHHHhc
Q 016590 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAEST 318 (386)
Q Consensus 239 ~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~~q~~~~ 318 (386)
++++++|+|+ ||||+||.+++.+ +++||+||||||||+|.||++++||++++++||+|+++|++.+
T Consensus 140 ~~~v~~Y~Hg------~kigvlV~~~~~~--------~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~~~ 205 (1289)
T 3avx_A 140 GDVLGSYQHG------ARIGVLVAAKGAD--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQS 205 (1289)
T ss_dssp CSEEEEEEET------TTEEEEEEEESCC--------HHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecC------CeEEEEEEecCCc--------HHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHHhc
Confidence 4899999994 6999999998631 3799999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEecccccC
Q 016590 319 GKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR 386 (386)
Q Consensus 319 gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vGEgiek 386 (386)
|||++|+||||+|||+|||+|+||++|+||+|+++||+|++++. +++|.+|+||++|||+||
T Consensus 206 gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~------~a~V~~FvRfEVGEGIEK 267 (1289)
T 3avx_A 206 GKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIEK 267 (1289)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTT------TCEEEEEEEEETTTTCCC
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhc------CcEEEEeeeEeccccccc
Confidence 99999999999999999999999999999999999999999886 489999999999999875
No 3
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=1.2e-76 Score=544.88 Aligned_cols=193 Identities=45% Similarity=0.720 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcccccccccccccccCCcEEEEe--cCCeEEEEEEeccc
Q 016590 75 TEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQ--NESKAAVIELNCET 152 (386)
Q Consensus 75 ~~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~--~~~~aalvElNCET 152 (386)
|+.+++||+||++||+|||||||||+++|||+|+|++|||++|+++|+||+||.|+||+|++++ +++.|+||||||||
T Consensus 1 m~~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcET 80 (196)
T 1aip_C 1 MSQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCET 80 (196)
T ss_dssp -CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSS
T ss_pred CChHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999 77899999999999
Q ss_pred cceecchHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhhccccCCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeE
Q 016590 153 DFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGF 232 (386)
Q Consensus 153 DFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~ 232 (386)
||||||+.|++|
T Consensus 81 DFVArn~~F~~l-------------------------------------------------------------------- 92 (196)
T 1aip_C 81 DFVARNELFQNL-------------------------------------------------------------------- 92 (196)
T ss_dssp HHHHTSHHHHHH--------------------------------------------------------------------
T ss_pred ccccCCHHHHHH--------------------------------------------------------------------
Confidence 999999999988
Q ss_pred EeeeCCCCeEEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHH
Q 016590 233 LLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILK 312 (386)
Q Consensus 233 ~~~~~~~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~ 312 (386)
+++|||||||++|.||++++||++++++||+|++
T Consensus 93 ----------------------------------------------akdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~ 126 (196)
T 1aip_C 93 ----------------------------------------------AKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYI 126 (196)
T ss_dssp ----------------------------------------------HHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEec
Q 016590 313 SQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVG 381 (386)
Q Consensus 313 ~q~~~~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vG 381 (386)
+|+..+|||++|++|||+|||+|||+|+||++|+||+|+++||+|+|++..+++|.+++|.+|+||+||
T Consensus 127 ~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~Q~fvkd~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG 195 (196)
T 1aip_C 127 QAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 195 (196)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhHhhhhcCCccCCCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 4
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=100.00 E-value=2.3e-45 Score=324.78 Aligned_cols=141 Identities=33% Similarity=0.604 Sum_probs=122.9
Q ss_pred CCeEEEEecCCCCCCCCcEEEEEEEeecCCCC-CCchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHHHHHHh
Q 016590 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSS-SFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAES 317 (386)
Q Consensus 239 ~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~-~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~~q~~~ 317 (386)
+|.+++|+|++ |++|+||.++++++.. -.+...+++++|||||+|++|.|+++++||++++++||+++++|+..
T Consensus 3 EG~v~~yiH~~-----gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~~ 77 (145)
T 1tfe_A 3 EGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALN 77 (145)
T ss_dssp EEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEecC-----CCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHHh
Confidence 46677777765 6777777776643210 01223467899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEecccc
Q 016590 318 TGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGI 384 (386)
Q Consensus 318 ~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vGEgi 384 (386)
+|||++|++||++|||+|||+|+||++|+|++|+++||+|+|++..+++|.+++|.+|.||++||||
T Consensus 78 ~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGegi 144 (145)
T 1tfe_A 78 EGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMM 144 (145)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC--
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 5
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.81 E-value=2.2e-20 Score=143.01 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcccccccccccccccCC
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEG 132 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EG 132 (386)
+++||+||++||+|||||||||+++|||+++|++|||++|++.+.||++|.++.|
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhccCCCC
Confidence 3899999999999999999999999999999999999999999999999988765
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.54 E-value=0.00012 Score=60.85 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
+.|+.|.++||.+-.+|++||.+||||++.|++.|...+
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999654
No 7
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.50 E-value=0.00015 Score=49.27 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~L 113 (386)
+.|.+|.+. |.+--.|++||..++||++.|++||
T Consensus 6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 689999998 9999999999999999999999998
No 8
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.14 E-value=0.00036 Score=48.56 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|.+|.++ |.+--+|++||..++||++.|++||-.
T Consensus 6 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 678999885 899999999999999999999999963
No 9
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=96.98 E-value=0.0018 Score=62.88 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCeEEEEecCCCCCCCCcEEEEEEEeecCCCCC-CchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHHHHHHh
Q 016590 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSS-FDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAES 317 (386)
Q Consensus 239 ~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~-~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~~q~~~ 317 (386)
.|.|+.|+| |+.|+||.+.++++... .+....|+++||+++++.+|...+..+....
T Consensus 62 EGlV~~~~~-------~~~gvlvEvNcETDFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~--------------- 119 (291)
T 1xb2_B 62 EGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSK--------------- 119 (291)
T ss_dssp EEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEE---------------
T ss_pred ceEEEEEEc-------CCEEEEEEEecccceeeCCHHHHHHHHHHHHHHHhcCCccccccccccc---------------
Confidence 789999997 68999999999876421 3446689999999999998864333322100
Q ss_pred cCCChHHHHHHHHhhhhhhhhcccccccccccCCCCc--HHHHHHHhhhhcCCCeEEEeEEEEEec
Q 016590 318 TGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLN--IKTILDNLSKEVGSPVKIGSFFRMEVG 381 (386)
Q Consensus 318 ~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~t--V~~~L~~~~k~~g~~v~V~~F~R~~vG 381 (386)
.|+.---|+..++ ++..| |.+.+.+....+|.++.|.+|.+++..
T Consensus 120 -----------------~~~~~e~l~~~~~--~~~~t~tv~d~i~~~ia~iGEni~lrR~~~~~~~ 166 (291)
T 1xb2_B 120 -----------------GFLNSSELSELPA--GPEREGSLKDQLALAIGKLGENMILKRAAWVKVP 166 (291)
T ss_dssp -----------------EEECHHHHHTSBC--CSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECC
T ss_pred -----------------ccCCHHHHhhccc--ccCcchhHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 0101112233333 34445 999999999999999999999999853
No 10
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.89 E-value=0.0015 Score=47.97 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 78 VNLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 78 ~~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-+.|.+||++ |.. -..+.+||..++||++.|++||-..+
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3678999988 542 24479999999999999999998654
No 11
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.87 E-value=0.0019 Score=47.13 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 77 QVNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 77 ~~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
.-+.|.+|+++ |. .-..|.+||..++||++.|++||-..+
T Consensus 11 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678999987 56 889999999999999999999997643
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.79 E-value=0.0021 Score=46.71 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHH
Q 016590 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (386)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LR 114 (386)
-+.|.+|+++ |. .--.|.+||..++||++.|++||-
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4688999987 67 888999999999999999999994
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.0023 Score=48.17 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..++||++.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 11 DCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 678999886 9999999999999999999999999753
No 14
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.64 E-value=0.0035 Score=49.01 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
-+.|.+|+++ |. .-..+.+||..++||++.|++||-.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4688999988 54 4577899999999999999999974
No 15
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=96.61 E-value=0.0025 Score=55.78 Aligned_cols=101 Identities=31% Similarity=0.397 Sum_probs=79.8
Q ss_pred ccCCcEEEEec--CCeEEEEEEeccccceecchHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh---------------
Q 016590 129 ATEGLLALAQN--ESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPE--------------- 191 (386)
Q Consensus 129 a~EGlV~~~~~--~~~aalvElNCETDFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e--------------- 191 (386)
|+||+|+++++ ++.||||||||||||||||+.|+.|+++||.+++...+...+ ...++.+
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~---~e~vp~~~~e~E~~i~~~~~~~ 77 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVS---AEEIPAEELEKERQIYIQAALN 77 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSS---GGGSCHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccc---hhhCCHHHHHHHHHHHHHHHHh
Confidence 68999999995 678999999999999999999999999999999887654221 1223332
Q ss_pred -----------------------hhhccccCCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeEEeeeC
Q 016590 192 -----------------------YLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSAS 237 (386)
Q Consensus 192 -----------------------~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~~~~~~ 237 (386)
.|+.+++. .+++.||+|.+.+.++++||||.||||.++...
T Consensus 78 ~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv-----~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vG 141 (145)
T 1tfe_A 78 EGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV-----KDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 141 (145)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHBGGGSEET-----TEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhCccc-----cCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeC
Confidence 23333322 134679999999999999999999999999864
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.50 E-value=0.0038 Score=44.35 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHH
Q 016590 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (386)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LR 114 (386)
-+.|.+|+++ |. .-..+.+||..++||++.|++||-
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578899987 54 356689999999999999999995
No 17
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.47 E-value=0.0051 Score=47.24 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-..|.+||++=-.--..|.+||.+++||++.|++||...+
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4578888886545677889999999999999999998643
No 18
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.42 E-value=0.0042 Score=46.31 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 78 ~~lIK~LR~~Tga-gm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
-+.|.+|+++ |. --..+.+||..++||++.|++||-.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578999987 54 3568899999999999999999974
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.42 E-value=0.0034 Score=45.06 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|++|-++ |.+--.|++||..++||++.|++||-.
T Consensus 10 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 10 TMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 678888877 899999999999999999999999965
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.39 E-value=0.0037 Score=47.27 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--+|++||..|+||++.|++||-..
T Consensus 11 ~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 678888764 8999999999999999999999999864
No 21
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.31 E-value=0.0058 Score=46.28 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRk 115 (386)
+.|.+|-++ |.+--.|++||..++| |++.|++||-.
T Consensus 21 ~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 568888885 9999999999999999 99999999965
No 22
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.0086 Score=46.64 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..++| |+|.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 678999985 9999999999999996 899999999764
No 23
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.011 Score=47.10 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..++||++.|++||-..
T Consensus 31 ~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 31 AALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 678999885 9999999999999999999999999864
No 24
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.77 E-value=0.0094 Score=46.43 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|++|-++ |..--+|.+||..++||++.|++||..
T Consensus 31 e~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 688999875 899999999999999999999999975
No 25
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.66 E-value=0.016 Score=44.92 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..++||++.|++||-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 678888876 8999999999999999999999999754
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.64 E-value=0.011 Score=44.61 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhc-CCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDC-DWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~-ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..+ |||++.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 11 TALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 578888874 99999999999999 79999999999764
No 27
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=95.63 E-value=0.011 Score=48.87 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~L 113 (386)
.++|.-++++||++-.+.++||.+||||+-.|+-+|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 388999999999999999999999999999999876
No 28
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.27 E-value=0.02 Score=43.28 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (386)
+.|.+|-+ -|.+--.|++||..++| |++.|++||-..
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 11 SLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp SSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 46788888 59999999999999987 999999999764
No 29
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.22 E-value=0.027 Score=45.03 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
-+.|++|-++ |.+--.|++||..++||++.|++||-.+
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 4689999886 9999999999999999999999999864
No 30
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.22 E-value=0.025 Score=39.91 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|.+|-++ |.+--.|++||..++ |+|.|++||-.
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 678889885 899999999999995 99999999953
No 31
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.07 E-value=0.032 Score=44.40 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcC-CCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCD-WDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~n-gDiekAi~~LRkk 116 (386)
+.|.+|-++ |.+--.|++||..++ ||++.|++||-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 31 EIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 788999985 999999999999995 7999999999753
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.05 E-value=0.033 Score=44.40 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|.+|-++ |..--.|++||..++||++.|++||-..
T Consensus 31 e~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 31 ESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 678999887 8999999999999999999999999864
No 33
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=94.98 E-value=0.054 Score=40.34 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+-++|.++...||.-+-=|.+.|++++||++.|+....+
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999999999999999999998543
No 34
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.90 E-value=0.02 Score=48.50 Aligned_cols=41 Identities=29% Similarity=0.419 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 75 TEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 75 ~~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
.+....|.+|.++ |.+--.+|+||..+|||+|+|++||-.+
T Consensus 74 ~~~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 74 MEFLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3456678888765 7999999999999999999999999754
No 35
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.75 E-value=0.033 Score=46.49 Aligned_cols=39 Identities=28% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
+.|.+||++=-.---.|.+||..++||++.|++||-..|
T Consensus 68 ~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 567777764322335799999999999999999997543
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.71 E-value=0.035 Score=46.99 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|++|-++ |.+--.|++||..++||++.|++||-.
T Consensus 80 ~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 80 EIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 689999885 999999999999999999999999975
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.67 E-value=0.019 Score=43.30 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
.|..|= .-|..--..++||.+++||+|.|.+||-..
T Consensus 22 ~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 22 CVETVV-NMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344443 347888899999999999999999999754
No 38
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=94.55 E-value=0.06 Score=39.90 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+-++|.+|..+||.-+-=|.+.|++++||++.|+.-..+
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999999999999999999999876
No 39
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=94.21 E-value=0.069 Score=37.77 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHH
Q 016590 78 VNLIKQLREQTSAP-MKDVKLALVDCDWDIEAALK 111 (386)
Q Consensus 78 ~~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~ 111 (386)
=++|.+....||+. +-.|+.=|+.+|||++.|+.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 37899999999976 79999999999999999974
No 40
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.72 E-value=0.022 Score=40.50 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.|.+|-.. |.+-..|.+||..|+||.+.|.+||-.
T Consensus 6 eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 566666544 899999999999999999999999953
No 41
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.12 E-value=0.018 Score=49.01 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHccc
Q 016590 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRGK 118 (386)
Q Consensus 79 ~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkkG~ 118 (386)
-+|.+||+-||.. ..--.+||.++|||+..|+.+|-.+-.
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 4899999999987 666789999999999999999986543
No 42
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.93 E-value=0.069 Score=45.10 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
++|.+|=+ -|.|.-.|+|||..+++|.++|++||-..
T Consensus 10 ~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 10 QCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 66777754 58999999999999999999999999865
No 43
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.70 E-value=0.078 Score=44.78 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkk 116 (386)
..|.+|-+ -|.+...|++||..|+| |++.|++||-.+
T Consensus 5 ~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 56777776 79999999999999965 999999999764
No 44
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.46 E-value=0.34 Score=33.38 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
++|.+...-||++--.|+.-|+.++||++.|+.-.-.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6899999999999999999999999999999986543
No 45
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.26 E-value=0.29 Score=38.16 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 79 ~lIK~LR~~Tgag-m~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-++.+||+.||.- ..---.||..++||+..|+-+|-.+-
T Consensus 26 ~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 4899999999953 44456899999999999999998643
No 46
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.01 E-value=0.27 Score=37.33 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 77 QVNLIKQLREQTS-APMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 77 ~~~lIK~LR~~Tg-agm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+-++|.+....|| ...-.|+.-|+.+|||++.|+.-.-.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3478999999999 99999999999999999999987543
No 47
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=90.84 E-value=0.25 Score=45.26 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHHHhcceeeeeeeEEeee
Q 016590 206 GGETTVQNAITEVAAIMGENVKLRRGFLLSA 236 (386)
Q Consensus 206 ~~~~Tv~d~i~~~ia~iGENI~LrR~~~~~~ 236 (386)
+++.||++.+.+.++.+||||.|+||.++.+
T Consensus 164 d~~~tV~~~l~~~~~~~G~~i~v~~F~R~~v 194 (196)
T 1aip_C 164 DDKVKVKELIQQAIAKIGENIVVRRFCRFEL 194 (196)
T ss_dssp CTTSBHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEEEEEe
Confidence 4578999999999999999999999999875
No 48
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.34 E-value=0.59 Score=34.28 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
...+.+|+++==.--...++||..+|||+++||+.|-..|
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4688999998545678899999999999999999986533
No 49
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.97 E-value=0.45 Score=35.44 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-++|.+....||+..-.|+.-|+.++||++.|+...-..+
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 3689999999999999999999999999999998765543
No 50
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=88.53 E-value=0.55 Score=34.14 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+-|++|=. -|.+-.+..+||..++||++-|-.+|++-
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56666654 48999999999999999999999999973
No 51
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.12 E-value=0.6 Score=34.08 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-|++|=. -|..--+..+||..++||+|-|-.+||+-.
T Consensus 12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 12 EIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3666644 389999999999999999999999999754
No 52
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.13 E-value=0.9 Score=32.57 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.++.|-++ -.......|-+|..++||+|.|++.|-..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 567788888 77899999999999999999999998654
No 53
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=86.34 E-value=0.82 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 88 TSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 88 Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-|+.--|..+||.-+++|++.|-++||+-.
T Consensus 14 ~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 488899999999999999999999999754
No 54
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.59 E-value=1.1 Score=33.79 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
++|.+.-..||+.--.++.-|+.++||++.|+...-+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6799999999999999999999999999999987654
No 55
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.15 E-value=1.2 Score=32.97 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
+.|+.|++. -+..--.-+++|.+++||+|.||+.|-+.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 678888888 45677778999999999999999999763
No 56
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=83.49 E-value=1 Score=33.04 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcc
Q 016590 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (386)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG 117 (386)
-|..|=. -|..-.|..+||.-+++|++-|-.+|++-.
T Consensus 10 ~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 10 EIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4455533 489999999999999999999999999854
No 57
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=82.00 E-value=0.76 Score=52.42 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCeEEEEecCCCCCCCCcEEEEEEEeecCCCCC-CchhhhHHHHHHHHhhhcCCc
Q 016590 238 SPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSS-FDPLKRVGSELAMHIVAQKPL 292 (386)
Q Consensus 238 ~~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~-~~~~~~~ak~iAmHIaA~~P~ 292 (386)
.+|.++.|+| |+.|+||+++.+++... .+....|+++||.++++.+|.
T Consensus 58 aEGlv~~~i~-------~~~g~lvEvNcETDFVAkn~~F~~l~~~ia~~~~~~~~~ 106 (1289)
T 3avx_A 58 ADGVIKTKID-------GNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKIT 106 (1289)
T ss_dssp CEEEEEEEEC-------SSEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHTTTCC
T ss_pred cCceEEEEEc-------CCEEEEEEEEccccceeCCHHHHHHHHHHHHHHHhcCCC
Confidence 3789999997 68999999999876421 244567899999998876553
No 58
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=79.30 E-value=2.3 Score=38.45 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
-+.|++|.++ |..=-++.+||..++||++.|.++|-.
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5678888766 888999999999999999999999853
No 59
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=78.33 E-value=1.8 Score=33.58 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhc
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDC 102 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ 102 (386)
-+..||..|+.||.|+++.|+..+.+
T Consensus 19 Ki~vIK~VR~itgLgLkEAK~lVe~~ 44 (74)
T 1ctf_A 19 KVAVIKAVRGATGLGLKEAKDLVESA 44 (74)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 36899999999999999999888766
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.75 E-value=0.85 Score=45.39 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (386)
-+.|.+|-+ -|.+--.|++||..++||.|.|++||-
T Consensus 169 ~~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 169 ETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888865 489999999999999999999999995
No 61
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=77.45 E-value=0.47 Score=44.60 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (386)
+.++|.++..+||.-+-=|.+.|++++||++.|+....
T Consensus 198 q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~ 235 (250)
T 1jkg_B 198 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 235 (250)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34799999999999999999999999999999998854
No 62
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.91 E-value=4.3 Score=30.81 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 79 ~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
+.++.|+++ -..---.-+..|++++||+|.|++-|-.
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678999998 3567777899999999999999999864
No 63
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=74.22 E-value=6.9 Score=32.26 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
.++.|+.|=++|..-+.+.=|||-+++||+++|..+|..
T Consensus 13 ~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 13 AIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 378899999999999999999999999999999999985
No 64
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.72 E-value=2.9 Score=30.57 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHccc
Q 016590 81 IKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRGK 118 (386)
Q Consensus 81 IK~LR~~Tgagm~dCKkAL~e~ng-DiekAi~~LRkkG~ 118 (386)
+.+|=+ -|.+---.-+||..+++ .++.|++||.|-+.
T Consensus 13 lq~L~e-MGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 13 LQELVN-AGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHH-HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 555544 35666677799999986 79999999998654
No 65
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=64.43 E-value=7.7 Score=33.09 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=29.8
Q ss_pred ccceeeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 016590 59 SFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDW 104 (386)
Q Consensus 59 ~~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~ng 104 (386)
.|.+....|..+ -+..||.+|.-||.|+.+.|+-.+.+..
T Consensus 58 eFdV~L~~~~~~------KI~VIK~VR~itgLgLKEAK~lVe~aP~ 97 (128)
T 1dd3_A 58 EFDVVLKSFGQN------KIQVIKVVREITGLGLKEAKDLVEKAGS 97 (128)
T ss_dssp SEEEEEEECTTC------HHHHHHHHHHHHCCCHHHHHHHHTTTTS
T ss_pred eeeEEEecCCcc------hHHHHHHHHHhcCCCHHHHHHHHHhCCc
Confidence 345555556432 3589999999999999999888776654
No 66
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=63.57 E-value=9.9 Score=35.76 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LR 114 (386)
.-+.|++|.++ |..=-++..||..+|||++.|.+.|-
T Consensus 215 ~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 215 YTKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 35688899777 89999999999999999999999985
No 67
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=59.89 E-value=3.2 Score=41.18 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
.+.|.+|=.+ |..-..|++||..|+||.+.|.+||-..
T Consensus 326 ~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 4677777655 9999999999999999999999999764
No 68
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=59.10 E-value=12 Score=33.27 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016590 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkk 116 (386)
..+.|++|-+. |.+=-.|.+||..|++|.+.|..||-..
T Consensus 130 e~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 130 DDQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35778888766 8999999999999999999999999643
No 69
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=56.47 E-value=8.2 Score=32.66 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.1
Q ss_pred cceeeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 016590 60 FALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVD 101 (386)
Q Consensus 60 ~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e 101 (386)
|.+....|..+ -+..||..|.-||.|+.+.|+-.+.
T Consensus 57 FdV~L~~~~~~------KI~VIK~VR~itgLgLkEAK~lVe~ 92 (122)
T 2zjq_5 57 FDVVLIDAGAS------KINVIKEIRGITGLGLKEAKDMSEK 92 (122)
T ss_pred eEEEEecCCcc------hHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44455555322 2589999999999999999876543
No 70
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=55.66 E-value=8.4 Score=32.73 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=26.2
Q ss_pred cceeeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 016590 60 FALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVD 101 (386)
Q Consensus 60 ~~~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e 101 (386)
|.+....|..+ -+..||..|.-||.|+.+.|+-.+.
T Consensus 60 FdV~L~~~~~~------KI~VIK~VR~itgLgLkEAK~lVe~ 95 (125)
T 2j01_L 60 FDVILKEAGAK------KLEVIKELRAITGLGLKEAKDLAEK 95 (125)
T ss_pred eEEEEeeCCcc------hHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44555555422 2589999999999999999876543
No 71
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.74 E-value=79 Score=24.16 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHHccccccccccccc
Q 016590 75 TEQVNLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRT 128 (386)
Q Consensus 75 ~~~~~lIK~LR~~-Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~ 128 (386)
.+.+++|.++|+. -..|.--..+.|...|+|+|..+..|-+.-+--.-+..+|.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~~ldr~ 65 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRN 65 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTTTSCTT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHHhcCcc
Confidence 3557889999988 46888899999999999999999999886554444444554
No 72
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=46.73 E-value=13 Score=40.70 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
.|..|-. .|.....+++||.+++||++.|++||-.
T Consensus 723 ~i~~l~~-mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 723 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 3444432 5788899999999999999999999975
No 73
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=45.50 E-value=15 Score=31.58 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHhc
Q 016590 78 VNLIKQLREQ-TSAPMKDVKLALVDC 102 (386)
Q Consensus 78 ~~lIK~LR~~-Tgagm~dCKkAL~e~ 102 (386)
+..||..|.- ||.|+.+.|+-.+.+
T Consensus 82 I~VIK~VR~i~TgLgLkEAK~lVe~a 107 (137)
T 2ftc_E 82 VKLIKEIKNYVQGINLVQAKKLVESL 107 (137)
T ss_pred hHHHHHHHHhccCCChHHHHHHHHhC
Confidence 5899999996 999999999877655
No 74
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=43.50 E-value=24 Score=33.45 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHccc
Q 016590 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGK 118 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~ 118 (386)
++|.+...-||++=..+..-|++++||++.|+.-.-..+.
T Consensus 17 ~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 17 EAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 6899999999999999999999999999999998765543
No 75
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.32 E-value=12 Score=28.42 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=30.8
Q ss_pred eeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Q 016590 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCD 103 (386)
Q Consensus 63 ~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~n 103 (386)
..|.|+... ...+..|+.||+..|.++.+.|+.|...+
T Consensus 41 g~R~Y~~~d---l~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 41 NYRVYSREE---VEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp SSCEECHHH---HHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred CeeecCHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 457777653 55678999999899999999999998654
No 76
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=42.29 E-value=22 Score=31.39 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 80 lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
.+++|=..-...--||-+||..++||++.|+-.|.+
T Consensus 105 K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLqr 140 (162)
T 4dbg_B 105 KVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQR 140 (162)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 455555555566789999999999999999998875
No 77
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=41.05 E-value=22 Score=28.63 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=34.3
Q ss_pred cCCCHHHHHHHHHHcccccccccccccccCC-cEEEEecCCeEEEEEEecccc
Q 016590 102 CDWDIEAALKELRKRGKVLASKKSSRTATEG-LLALAQNESKAAVIELNCETD 153 (386)
Q Consensus 102 ~ngDiekAi~~LRkkG~akA~Kka~R~a~EG-lV~~~~~~~~aalvElNCETD 153 (386)
...|++.+.+.|++.|......-..+....| .-.+++.+-.|-+|||.+.|.
T Consensus 93 ~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 145 (152)
T 3huh_A 93 TSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYVE 145 (152)
T ss_dssp ESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEEEEC--
T ss_pred ecCCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEEEeccc
Confidence 3459999999999999865433223333333 234556667799999999875
No 78
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=40.32 E-value=15 Score=31.26 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=39.2
Q ss_pred eeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016590 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (386)
Q Consensus 63 ~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk 115 (386)
..|.|+... ...+..|+.|| ..|.++.+.|+-|...+.+.+...+.|..
T Consensus 39 g~R~Y~~~d---l~~l~~I~~lr-~~G~sl~~I~~~l~~~~~~~~~~~~~L~~ 87 (146)
T 3hh0_A 39 GHRLYTKDD---LYVLQQIQSFK-HLGFSLGEIQNIILQRDIETEVFLRQMHF 87 (146)
T ss_dssp SCEEBCHHH---HHHHHHHHHHH-HTTCCHHHHHHHHTSSEEEHHHHHHHHHH
T ss_pred CCEeeCHHH---HHHHHHHHHHH-HcCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 467787653 55678999998 68999999999998887788877777654
No 79
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=38.86 E-value=19 Score=28.16 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHcccccccccccccccCCcEEEEecCCeEEEEEEe
Q 016590 105 DIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELN 149 (386)
Q Consensus 105 DiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalvElN 149 (386)
|++++.+.|+++|..-...-..|....|.-.+++.+..|.+|||-
T Consensus 87 di~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPdG~~iEl~ 131 (133)
T 3hdp_A 87 DIQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTDIGLIELL 131 (133)
T ss_dssp CHHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETTTEEEEEE
T ss_pred CHHHHHHHHHHcCCccccCCeecccCCCceEEEEECCCceEEEEe
Confidence 899999999999986543322344456765666655567899983
No 80
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=37.43 E-value=7 Score=33.04 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcC
Q 016590 78 VNLIKQLREQTSAPMKDVKLALVDCD 103 (386)
Q Consensus 78 ~~lIK~LR~~Tgagm~dCKkAL~e~n 103 (386)
+..||..|.-||.|+++.|+..+.+.
T Consensus 67 i~VIK~VR~itgLgLkEAK~lVe~aP 92 (121)
T 3sgf_J 67 VAVIKAVRGATGLGLKEAKDLVESAP 92 (121)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 58999999999999999988766543
No 81
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.47 E-value=40 Score=28.45 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=36.8
Q ss_pred eeeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 016590 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRK 115 (386)
Q Consensus 62 ~~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~---ngDiekAi~~LRk 115 (386)
...|.|+... ...+..|+.|| ..|.++.+.|+-|... +.+.+...+.|++
T Consensus 36 ~g~R~Y~~~d---l~~l~~I~~lr-~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~ 88 (142)
T 3gp4_A 36 SGVRKFGAED---LRWILFTRQMR-RAGLSIEALIDYLALFREGEHTLEARAELLKK 88 (142)
T ss_dssp TSCBCBCHHH---HHHHHHHHHHH-HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCeeeCHHH---HHHHHHHHHHH-HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3567887653 56688999997 5799999999988743 3456666677764
No 82
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=33.06 E-value=24 Score=25.48 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCHHHHH----HHHHhcCCCHHHHHHHHHHc
Q 016590 79 NLIKQLREQTSAPMKDVK----LALVDCDWDIEAALKELRKR 116 (386)
Q Consensus 79 ~lIK~LR~~Tgagm~dCK----kAL~e~ngDiekAi~~LRkk 116 (386)
.++..|...-..|+.+|- +.|+..+||+.+|++.|+..
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~~ 50 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYS 50 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhhc
Confidence 466777778888888884 89999999999999999753
No 83
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.35 E-value=36 Score=28.86 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=36.1
Q ss_pred eeccccCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 016590 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRK 115 (386)
Q Consensus 63 ~~r~~ss~~~~~~~~~~lIK~LR~~Tgagm~dCKkAL~e~---ngDiekAi~~LRk 115 (386)
..|.|+... ...+..|+.||+ .|.++.+.|.-|... +.+.+...+.|++
T Consensus 51 g~R~Y~~~d---l~~l~~I~~lr~-~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~ 102 (148)
T 3gpv_A 51 GDRIFNEEA---LKYLEMILCLKN-TGMPIQKIKQFIDWSMEGDSTILHRLKLMKQ 102 (148)
T ss_dssp CCEEBCHHH---HHHHHHHHHHHT-TTCCHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCeecCHHH---HHHHHHHHHHHH-cCCCHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 467787653 566889999965 799999999999843 3456666666654
No 84
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=29.34 E-value=45 Score=27.27 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcccccccccccccccCCcEEEEecCCeEEEEEEeccccceecchHHHH
Q 016590 104 WDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQY 163 (386)
Q Consensus 104 gDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalvElNCETDFVArN~~F~~ 163 (386)
.|++.+.+.|++.|........ ....|. .+++.+-.|.++||....+--|.+..|+.
T Consensus 74 ~d~d~~~~~l~~~G~~v~~~p~--~~~~G~-~~~~~DPdG~~iel~~~~~~~a~~~~~~~ 130 (144)
T 3r6a_A 74 DSLDKFKTFLEENGAEIIRGPS--KVPTGR-NMTVRHSDGSVIEYVEHSKIEAENLYFQS 130 (144)
T ss_dssp SCHHHHHHHHHHTTCEEEEEEE--EETTEE-EEEEECTTSCEEEEEEECC----------
T ss_pred CCHHHHHHHHHHcCCEEecCCc--cCCCce-EEEEECCCCCEEEEEEcCCcchhhhhhhc
Confidence 3899999999999986543222 224464 45666667999999999988888888875
No 85
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=20.74 E-value=81 Score=24.76 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHcccccccccccccccCCcEEEEecCCeEEEEEEeccc
Q 016590 104 WDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET 152 (386)
Q Consensus 104 gDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~~aalvElNCET 152 (386)
.|++++.+.|++.|.........+ ..|. .+++.+-.|-+|||.+..
T Consensus 107 ~d~~~~~~~l~~~G~~~~~~~~~~--~~g~-~~~~~DPdG~~iel~~~~ 152 (156)
T 3kol_A 107 QLFDRAVTVIGENKIAIAHGPVTR--PTGR-GVYFYDPDGFMIEIRCDP 152 (156)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEC---CCE-EEEEECTTSCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCccccCceec--CCcc-EEEEECCCCCEEEEEecC
Confidence 499999999999998654322222 3465 555666678899998764
Done!