BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016591
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/394 (61%), Positives = 283/394 (71%), Gaps = 47/394 (11%)
Query: 9 DAHLTSAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQC 68
+ HLTSAAAFVEGGIQDACDDACSICLE F ESDPSTLTSCKHE+HLQCILEWCQRSSQC
Sbjct: 11 EGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQC 70
Query: 69 PMCWQPISLKDPTSQELLEAVERERSFRLNPSRNATIFRHPTLGDFELQHLPVGANDAEL 128
PMCWQ ISLKDPTSQELLEAVE+ER+FR NP+RNATIFRHPTLGDFELQHLPVG ++AE+
Sbjct: 71 PMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEI 130
Query: 129 EERIIQHLAAAAAMGRARHIARRESHRNRASSQARPQFLVFSTHPNAA------------ 176
EERIIQHLAAAAAMGRARH RRE HR+R+SSQ QF+VFS+ PNA+
Sbjct: 131 EERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPMPSSP 190
Query: 177 ----NDDPVSSSPTHLEGEASPITTVATPSSPATGGEESTQQSTHLLSAQADHVSASASG 232
D VS+ P + GE S + P+ S+ VS SAS
Sbjct: 191 SQRDESDTVSNLPHNALGEGSHQSNTQPPT-----------------SSHPRQVSPSASD 233
Query: 233 SSAFASGQVGNTLNNRRSPNQPSPNSQDRAGPSDFQSFSESLKSRFNAVSMRYKESISKS 292
S N R NQ SP+ QDRAGPS+ QSFSESLKSR NAVS RYKESISK+
Sbjct: 234 S-------------NSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKN 280
Query: 293 TRGWKERFFSRNNTMADLGTEVRREVNAGISTVSRMMERLETRDSNSNNTTSVSSSSNNS 352
TR WK+R FSRN +MADLG+EV+REV+AGI+TVSRMMERLETR+++ +T SVS S N
Sbjct: 281 TRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENH 340
Query: 353 VPELNNQQ-KSETADTNPMNDTNVQASCAASSGS 385
PE NN+ ++ D + +N+ V+ +CA SGS
Sbjct: 341 TPETNNEHNRAAAGDEHSVNERGVKETCATGSGS 374
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%)
Query: 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 87
DDACSICLE F+ DPST+TSCKHE+HLQCI+EW QRS +CP+CWQ L+DP SQELL
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLA 102
Query: 88 AVERERSFR 96
AVE+ER +
Sbjct: 103 AVEKERLLK 111
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
+D C CLE+++ +P +T C H FHL CI EW +RS CP+C
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC 221
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 20 EGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79
EGG D CS+C E E + CKHEFH +CIL W ++++ CP+C + D
Sbjct: 64 EGG-----DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDD 118
Query: 80 PTSQEL 85
P +EL
Sbjct: 119 PVYEEL 124
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 14 SAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQ 73
S ++ + G+ CS+C+ D+ + C HEFH+ CI W + CP+C +
Sbjct: 597 STRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRR 656
Query: 74 PI 75
P+
Sbjct: 657 PV 658
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 90/217 (41%), Gaps = 22/217 (10%)
Query: 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAV 89
C+ICLE+FSE + SC HEFH C+ W + CP+C I+ D SQ L +
Sbjct: 271 VCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQSLGPS- 329
Query: 90 ERERSFRLNPSRNATIFR-HPTLGDFELQHLP----VGANDAEL--EERIIQHLAAA-AA 141
RS++ P R + R HP + HLP +G + + + R L +
Sbjct: 330 ---RSYQ-EPGRRLHLIRQHPGHAHY---HLPAAYLLGPSRSAVARPPRPGPFLPSQEPG 382
Query: 142 MGRARHIARRESHRNRASSQARPQFLVFSTHPNAANDDP--VSSSPTHLEGEASPITTVA 199
MG H R +H Q R L + HP A + S+ H P+
Sbjct: 383 MGPRHHRFPRAAHPRAPGEQQR---LAGAQHPYAQGWGLSHLQSTSQHPAACPVPLRRAR 439
Query: 200 TPSSPATGGEESTQQSTHLLSAQA-DHVSASASGSSA 235
P S +G T++S +L A D S GSS+
Sbjct: 440 PPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSS 476
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 14 SAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQ 73
S + I CS+C+ D+ + C HEFH+ CI W + CP+C Q
Sbjct: 615 STRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQ 674
Query: 74 PI 75
P+
Sbjct: 675 PV 676
>sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 OS=Homo sapiens GN=RNF11 PE=1 SV=1
Length = 154
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
C IC+ DF DP C H +HL CI +W RS CP C +P+
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPV 143
>sp|Q08DI6|RNF11_BOVIN RING finger protein 11 OS=Bos taurus GN=RNF11 PE=2 SV=1
Length = 154
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
C IC+ DF DP C H +HL CI +W RS CP C +P+
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPV 143
>sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 OS=Mus musculus GN=Rnf11 PE=1 SV=1
Length = 154
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
C IC+ DF DP C H +HL CI +W RS CP C +P+
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPV 143
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 87
D C ICL+ F + S L C H+F +C+ EW + ++CP+C QP +
Sbjct: 101 DSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF-------DSIFH 151
Query: 88 AVERERSFR---LNPSRNATIFRHPTLGDFELQ 117
+V E F+ L PS N + F +P + F +
Sbjct: 152 SVRAEDDFKEYVLRPSYNGS-FTNPEVRRFRYR 183
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
+ C++CLEDF D + CKH FH +C+++W + CP+C P+
Sbjct: 76 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 122
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQEL 85
C++CLEDF D + C+H FH +C+++W + CPMC +PI+ TSQ +
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSI 147
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 24 QDACDDA--CSICLEDFSESDPSTLT-SCKHEFHLQCILEWCQRSSQCPMC 71
QD+C D CSICL + + D + L C H FH++CI W Q S CP+C
Sbjct: 118 QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPIC 168
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 87
D C ICL+ F + S L C H+F +C+ EW + ++CP+C QP +
Sbjct: 100 DSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF-------DSIFH 150
Query: 88 AVERERSFR---LNPSRNATI------FRHPT 110
+V E F+ L PS N + FR+ T
Sbjct: 151 SVRAEDDFKEYVLRPSYNGSFVTPDRRFRYRT 182
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
+ C++CLEDF D + CKH FH +C+++W + CP+C P+
Sbjct: 76 ELCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPV 122
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
+D D C+IC+E + +D + CKHEFH CI W CPMC
Sbjct: 296 KDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMC 343
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 VEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78
++G DD C+IC +F+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 79 D 79
D
Sbjct: 593 D 593
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
G DA CS+C+ +++E + C HE+H+ CI W +S CP+C + +
Sbjct: 562 GENDALK-TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
G DA CS+C+ +++E + C HE+H+ CI W +S CP+C + +
Sbjct: 560 GENDALK-TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
CS+C+ +++E + C HE+H+ CI W +S CP+C + +
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 23 IQDACDDACSICLEDFSESDPSTLTS-CKHEFHLQCILEWCQRSSQCPMCWQPISLKDPT 81
++D D CSICL +F + D L S C H FH CI W + CP+C + + ++D T
Sbjct: 146 VKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRT 205
Query: 82 SQE 84
S E
Sbjct: 206 SLE 208
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76
C++CLEDF D + C+H FH +C+++W + CPMC +PI+
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIA 138
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 13 TSAAAFVEG-GIQDACDDACSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPM 70
+ F +G GI D + CS+CL +F E + L C H FHL CI W CP+
Sbjct: 118 ITVVGFKKGEGIIDGTE--CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPL 175
Query: 71 CWQPISL-KDPTSQE 84
C P+ L +P QE
Sbjct: 176 CRAPVLLITEPPHQE 190
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 DACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
D+CS+CL+DF + +L C H FHL CI W R CPMC + I
Sbjct: 194 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 80
C++C++DF E + CKH +H C+L W + + CP+C + DP
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDP 273
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
C+ICLE+FSE + SC HEFH C+ W + CP+C
Sbjct: 271 VCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLC 312
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
G DA CS+C+ +++E + C HE+H+ CI W +S CP+C + +
Sbjct: 538 GENDALK-TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75
G DA CS+C+ +++E + C HE+H+ CI W +S CP+C + +
Sbjct: 577 GENDALK-TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 629
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 18 FVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76
+ EG Q+ +++C IC D+ + + L CKH +H +CI W + + CP+C +S
Sbjct: 275 YKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVS 333
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 27 CDDACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
C D C++CL +F E D TL C H FHL+CI EW + CP+C
Sbjct: 153 CRD-CAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLC 197
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 31 CSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPMC 71
C++CL +FSE D L C H FHL CI W Q +S CP+C
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLC 184
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 31 CSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAV 89
C +CL + ++ D + L SC H FH++CI W Q +S CP+C + + LK ++ L
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGG- 146
Query: 90 ERERSFRLN 98
R++SF N
Sbjct: 147 -RDKSFNQN 154
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 VEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78
++G +D C+IC +F+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 79 D 79
D
Sbjct: 593 D 593
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQE 84
C+IC+E F +D CKH FH CI W + + C +C P+ DP SQ+
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV---DPNSQQ 446
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 VEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78
++G +D C+IC +F+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 79 D 79
D
Sbjct: 593 D 593
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 8 DDAHLTSAAAFVEGGIQDACDDA--CSICLEDFSESDP-STLTSCKHEFHLQCILEWCQR 64
D + + F+ G + + + C++CL +FS++D L C H FHL CI W
Sbjct: 182 DQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLS 241
Query: 65 SSQCPMCWQPIS 76
+S CP+C + +S
Sbjct: 242 NSTCPLCRRSLS 253
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 29 DACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMC 71
D+CS+CL+DF + +L C H FHL CI W R CPMC
Sbjct: 189 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMC 232
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 31 CSICLEDFSESDPSTLT-SCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTS 82
CS+CL F + + L C+H FH+ CI +W ++ + CP+C ++++D S
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLS 176
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI------------- 75
D+C IC E + ++ + +CKH FH CI W CPMC I
Sbjct: 254 DSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDILKALGIQMDIEDG 313
Query: 76 --SLKDPTSQEL---LEAVERERSFRLNPSRNAT----IFRHPT 110
SL+ S EL L VE E ++ L P+R ++ + HPT
Sbjct: 314 TDSLQVLMSNELPGTLSPVEEETNYELPPARTSSKVTHVQEHPT 357
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 8 DDAHLTSAAAFVEGGIQDACDDACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSS 66
D + S FV G D C++CL E D + L +CKH FH+ C+ W S
Sbjct: 77 DSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQS 136
Query: 67 QCPMC 71
CP+C
Sbjct: 137 TCPVC 141
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 22 GIQDACDDACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 80
GI D C ICL DF + + L C H FH++CI W S CP C Q + L+ P
Sbjct: 105 GIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQP 164
Query: 81 T 81
+
Sbjct: 165 S 165
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 31 CSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPT 81
CS+CL F++SD L+ CKH FH+ CI W + CP+C +S+K T
Sbjct: 142 CSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQT 193
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 30 ACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMC 71
+CS+CL+DF + +L C H FHL CI +W +R + CP+C
Sbjct: 175 SCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLC 217
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 31 CSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQ 83
CS+CL +F E D L C H FH+ CI W + S CP+C P+ P ++
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTE 166
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
D C++C+E + ++D + CKH FH C+ W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
D C++C+E + ++D + CKH FH C+ W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
D+C++C+E + SD + +C H FH CI W CPMC
Sbjct: 258 DSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWLLEHRTCPMC 300
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71
D C++C+E + ++D + CKH FH C+ W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 2 EENKQSDDAHLTSAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEW 61
E+ K + +T +E +Q CSIC E F E+ +C H F CI EW
Sbjct: 369 EKAKAQKEEVVTQMTEVLESELQ------CSICSELFIEA---VTLNCAHSFCQHCISEW 419
Query: 62 CQRSSQCPMCWQPIS 76
R +CPMCWQ I+
Sbjct: 420 RNRKDKCPMCWQNIT 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.121 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,952,623
Number of Sequences: 539616
Number of extensions: 5495760
Number of successful extensions: 45611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 643
Number of HSP's that attempted gapping in prelim test: 33126
Number of HSP's gapped (non-prelim): 9856
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)