Query 016591
Match_columns 386
No_of_seqs 260 out of 1670
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 2.2E-12 4.7E-17 92.1 2.2 44 29-72 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.1 5.2E-11 1.1E-15 119.2 3.4 49 29-77 230-279 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.0 3.1E-10 6.7E-15 90.1 4.0 46 27-72 18-73 (73)
4 PHA02929 N1R/p28-like protein; 99.0 4.4E-10 9.5E-15 107.8 4.3 53 24-76 170-227 (238)
5 KOG0317 Predicted E3 ubiquitin 99.0 3.6E-10 7.8E-15 109.8 3.6 53 24-79 235-287 (293)
6 PLN03208 E3 ubiquitin-protein 99.0 4.5E-10 9.9E-15 104.3 4.0 55 22-79 12-82 (193)
7 smart00504 Ubox Modified RING 98.9 1.5E-09 3.3E-14 82.1 5.4 58 28-88 1-58 (63)
8 KOG0823 Predicted E3 ubiquitin 98.9 6.9E-10 1.5E-14 105.0 3.0 53 25-80 44-99 (230)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.5E-09 3.3E-14 79.5 3.4 47 27-76 1-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.5E-09 3.2E-14 75.7 2.6 39 31-71 1-39 (39)
11 PF12861 zf-Apc11: Anaphase-pr 98.8 3.6E-09 7.8E-14 86.4 3.8 52 27-78 20-84 (85)
12 TIGR00599 rad18 DNA repair pro 98.8 5.2E-09 1.1E-13 107.0 5.6 59 25-86 23-81 (397)
13 cd00162 RING RING-finger (Real 98.8 5.9E-09 1.3E-13 72.1 3.5 44 30-75 1-45 (45)
14 PF15227 zf-C3HC4_4: zinc fing 98.8 6E-09 1.3E-13 74.3 3.1 38 31-71 1-42 (42)
15 COG5243 HRD1 HRD ubiquitin lig 98.7 7.5E-09 1.6E-13 103.6 3.3 52 26-77 285-346 (491)
16 COG5540 RING-finger-containing 98.7 7.2E-09 1.6E-13 101.5 3.1 50 28-77 323-373 (374)
17 KOG0320 Predicted E3 ubiquitin 98.7 6.9E-09 1.5E-13 94.9 2.4 54 26-80 129-182 (187)
18 KOG0311 Predicted E3 ubiquitin 98.7 3.7E-09 7.9E-14 105.3 -0.2 92 26-133 41-134 (381)
19 PF00097 zf-C3HC4: Zinc finger 98.7 1.5E-08 3.2E-13 70.9 2.8 39 31-71 1-41 (41)
20 KOG0287 Postreplication repair 98.7 1E-08 2.2E-13 101.7 2.5 60 26-88 21-80 (442)
21 PHA02926 zinc finger-like prot 98.7 1.3E-08 2.8E-13 96.2 3.1 55 23-77 165-231 (242)
22 PF14634 zf-RING_5: zinc-RING 98.6 5.3E-08 1.2E-12 69.7 3.4 44 30-73 1-44 (44)
23 KOG2164 Predicted E3 ubiquitin 98.5 3.5E-08 7.7E-13 102.3 2.8 53 28-83 186-243 (513)
24 PF04564 U-box: U-box domain; 98.5 1.2E-07 2.6E-12 75.1 4.0 58 27-87 3-61 (73)
25 smart00184 RING Ring finger. E 98.5 1.5E-07 3.3E-12 62.7 3.5 38 31-71 1-39 (39)
26 COG5574 PEX10 RING-finger-cont 98.4 1.1E-07 2.3E-12 91.8 2.5 51 26-79 213-265 (271)
27 KOG0802 E3 ubiquitin ligase [P 98.4 7.8E-08 1.7E-12 102.1 1.6 51 26-76 289-341 (543)
28 KOG2177 Predicted E3 ubiquitin 98.3 3.1E-07 6.8E-12 85.0 1.9 46 25-73 10-55 (386)
29 KOG1493 Anaphase-promoting com 98.3 2.2E-07 4.7E-12 74.3 0.7 51 28-78 20-83 (84)
30 COG5432 RAD18 RING-finger-cont 98.3 4.1E-07 8.9E-12 88.9 2.7 54 24-80 21-74 (391)
31 COG5194 APC11 Component of SCF 98.3 4.9E-07 1.1E-11 72.9 2.4 35 44-78 49-83 (88)
32 TIGR00570 cdk7 CDK-activating 98.3 7.7E-07 1.7E-11 88.3 4.3 56 28-83 3-61 (309)
33 PF13445 zf-RING_UBOX: RING-ty 98.2 7.3E-07 1.6E-11 64.1 2.8 38 31-69 1-43 (43)
34 PF14835 zf-RING_6: zf-RING of 98.2 7.5E-07 1.6E-11 69.2 1.5 58 28-89 7-64 (65)
35 KOG2930 SCF ubiquitin ligase, 97.8 9.7E-06 2.1E-10 68.4 1.2 51 27-77 45-109 (114)
36 KOG0978 E3 ubiquitin ligase in 97.7 1.1E-05 2.3E-10 87.5 1.7 53 26-81 641-694 (698)
37 KOG1734 Predicted RING-contain 97.7 7E-06 1.5E-10 79.7 -0.2 53 26-78 222-283 (328)
38 KOG2660 Locus-specific chromos 97.7 1E-05 2.2E-10 80.4 0.6 50 27-78 14-63 (331)
39 KOG0824 Predicted E3 ubiquitin 97.7 2.2E-05 4.8E-10 77.3 2.7 48 28-78 7-55 (324)
40 PF11793 FANCL_C: FANCL C-term 97.6 8.7E-06 1.9E-10 64.2 -0.6 50 28-77 2-67 (70)
41 KOG1039 Predicted E3 ubiquitin 97.6 3.7E-05 8E-10 77.7 3.2 58 21-78 154-223 (344)
42 KOG4159 Predicted E3 ubiquitin 97.6 3.7E-05 8E-10 79.0 2.9 62 13-77 69-130 (398)
43 KOG0828 Predicted E3 ubiquitin 97.6 3.4E-05 7.4E-10 80.1 2.1 49 28-76 571-634 (636)
44 smart00744 RINGv The RING-vari 97.5 9.4E-05 2E-09 54.5 3.3 42 30-72 1-49 (49)
45 COG5219 Uncharacterized conser 97.5 3.6E-05 7.8E-10 84.9 1.1 52 26-77 1467-1524(1525)
46 KOG4172 Predicted E3 ubiquitin 97.5 3.5E-05 7.5E-10 58.2 0.5 48 26-76 5-54 (62)
47 KOG1785 Tyrosine kinase negati 97.4 0.00024 5.2E-09 72.5 5.2 47 30-79 371-419 (563)
48 KOG4265 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 73.3 3.1 47 27-76 289-336 (349)
49 KOG0827 Predicted E3 ubiquitin 97.3 0.00012 2.6E-09 74.3 2.7 48 29-76 5-56 (465)
50 KOG0825 PHD Zn-finger protein 97.3 4.5E-05 9.7E-10 82.8 -0.4 53 26-78 121-173 (1134)
51 KOG0804 Cytoplasmic Zn-finger 97.2 0.00013 2.8E-09 75.3 1.6 51 24-76 171-222 (493)
52 PF11789 zf-Nse: Zinc-finger o 97.1 0.00024 5.2E-09 54.1 1.7 43 26-70 9-53 (57)
53 KOG2879 Predicted E3 ubiquitin 97.0 0.00042 9E-09 67.7 3.2 50 25-76 236-287 (298)
54 KOG4445 Uncharacterized conser 97.0 0.00019 4.1E-09 70.8 0.6 51 28-78 115-188 (368)
55 KOG1645 RING-finger-containing 96.9 0.00052 1.1E-08 70.2 3.0 54 27-80 3-60 (463)
56 KOG0297 TNF receptor-associate 96.9 0.00039 8.4E-09 71.5 2.1 55 25-81 18-72 (391)
57 KOG1813 Predicted E3 ubiquitin 96.8 0.00084 1.8E-08 66.2 2.7 61 27-90 240-300 (313)
58 KOG3970 Predicted E3 ubiquitin 96.8 0.002 4.3E-08 61.6 5.0 52 26-78 48-107 (299)
59 COG5152 Uncharacterized conser 96.7 0.0011 2.5E-08 62.2 2.7 48 26-76 194-241 (259)
60 KOG4692 Predicted E3 ubiquitin 96.6 0.0016 3.5E-08 65.7 3.1 54 21-77 415-468 (489)
61 KOG1428 Inhibitor of type V ad 96.2 0.0031 6.6E-08 72.5 3.3 52 27-78 3485-3546(3738)
62 KOG1002 Nucleotide excision re 96.1 0.003 6.5E-08 66.6 2.3 52 24-78 532-588 (791)
63 COG5175 MOT2 Transcriptional r 95.9 0.0077 1.7E-07 60.7 4.0 56 25-80 11-68 (480)
64 KOG3039 Uncharacterized conser 95.8 0.0078 1.7E-07 58.3 3.4 54 27-80 220-274 (303)
65 KOG1941 Acetylcholine receptor 95.7 0.0033 7.2E-08 64.2 0.7 51 25-75 362-415 (518)
66 PF14570 zf-RING_4: RING/Ubox 95.7 0.0097 2.1E-07 44.0 2.8 45 31-75 1-47 (48)
67 COG5236 Uncharacterized conser 95.6 0.0082 1.8E-07 60.6 3.0 50 24-76 57-108 (493)
68 KOG1571 Predicted E3 ubiquitin 95.5 0.0078 1.7E-07 60.9 2.2 47 24-76 301-347 (355)
69 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.015 3.3E-07 56.5 3.8 54 25-79 110-164 (260)
70 COG5222 Uncharacterized conser 95.3 0.014 3E-07 58.0 3.4 48 29-78 275-324 (427)
71 KOG4275 Predicted E3 ubiquitin 95.3 0.0025 5.5E-08 62.9 -1.8 44 26-76 298-342 (350)
72 KOG4185 Predicted E3 ubiquitin 95.2 0.019 4.1E-07 56.3 3.8 49 28-76 3-55 (296)
73 KOG4739 Uncharacterized protei 95.1 0.0073 1.6E-07 58.1 0.7 46 30-78 5-50 (233)
74 KOG1814 Predicted E3 ubiquitin 94.9 0.029 6.2E-07 57.9 4.3 46 28-73 184-237 (445)
75 KOG3268 Predicted E3 ubiquitin 94.7 0.019 4.2E-07 53.2 2.4 52 27-78 164-230 (234)
76 KOG0826 Predicted E3 ubiquitin 94.2 0.04 8.7E-07 55.4 3.3 48 26-75 298-345 (357)
77 KOG1952 Transcription factor N 94.0 0.036 7.7E-07 61.5 2.9 46 28-73 191-244 (950)
78 KOG2114 Vacuolar assembly/sort 94.0 0.026 5.7E-07 62.5 1.9 42 29-75 841-882 (933)
79 PF10367 Vps39_2: Vacuolar sor 93.8 0.024 5.1E-07 46.7 0.9 35 24-59 74-108 (109)
80 KOG1940 Zn-finger protein [Gen 93.7 0.035 7.6E-07 54.8 1.9 52 24-76 154-206 (276)
81 PHA03096 p28-like protein; Pro 93.7 0.035 7.5E-07 55.1 1.9 45 29-73 179-231 (284)
82 PHA02862 5L protein; Provision 93.5 0.059 1.3E-06 48.5 2.8 47 28-78 2-55 (156)
83 PHA02825 LAP/PHD finger-like p 93.2 0.086 1.9E-06 48.1 3.5 48 26-77 6-60 (162)
84 KOG2932 E3 ubiquitin ligase in 93.0 0.04 8.7E-07 55.0 1.1 41 31-75 93-133 (389)
85 KOG1001 Helicase-like transcri 93.0 0.041 8.9E-07 60.5 1.2 46 29-78 455-502 (674)
86 PF03854 zf-P11: P-11 zinc fin 92.4 0.05 1.1E-06 40.2 0.6 44 30-78 4-48 (50)
87 KOG2817 Predicted E3 ubiquitin 92.1 0.12 2.6E-06 53.2 3.1 49 26-74 332-383 (394)
88 PF05883 Baculo_RING: Baculovi 92.0 0.099 2.1E-06 46.5 2.2 45 28-72 26-76 (134)
89 PF08746 zf-RING-like: RING-li 91.7 0.094 2E-06 37.6 1.4 41 31-71 1-43 (43)
90 PF10272 Tmpp129: Putative tra 91.6 0.14 3.1E-06 52.3 3.1 32 48-79 310-354 (358)
91 PF14447 Prok-RING_4: Prokaryo 91.6 0.11 2.4E-06 39.5 1.7 47 28-79 7-53 (55)
92 PF12906 RINGv: RING-variant d 91.5 0.11 2.4E-06 37.9 1.7 40 31-71 1-47 (47)
93 KOG3800 Predicted E3 ubiquitin 91.5 0.19 4.2E-06 49.8 3.8 54 30-83 2-58 (300)
94 KOG0298 DEAD box-containing he 91.5 0.087 1.9E-06 60.9 1.5 46 28-75 1153-1198(1394)
95 COG5220 TFB3 Cdk activating ki 91.2 0.064 1.4E-06 52.0 0.1 55 26-80 8-68 (314)
96 COG5183 SSM4 Protein involved 90.6 0.18 3.8E-06 56.0 2.7 53 26-79 10-69 (1175)
97 KOG3002 Zn finger protein [Gen 90.4 0.2 4.4E-06 50.1 2.8 47 25-76 45-91 (299)
98 KOG4367 Predicted Zn-finger pr 88.4 0.27 6E-06 51.3 2.1 35 26-63 2-36 (699)
99 PF07800 DUF1644: Protein of u 87.5 0.54 1.2E-05 43.0 3.2 12 27-38 1-12 (162)
100 KOG3899 Uncharacterized conser 85.9 0.37 8E-06 48.0 1.3 33 48-80 324-369 (381)
101 PF05290 Baculo_IE-1: Baculovi 84.8 0.77 1.7E-05 40.9 2.7 52 27-78 79-134 (140)
102 KOG4362 Transcriptional regula 84.4 0.36 7.7E-06 53.0 0.5 48 28-78 21-71 (684)
103 KOG1812 Predicted E3 ubiquitin 83.5 0.48 1E-05 48.9 1.0 38 27-64 145-183 (384)
104 KOG0825 PHD Zn-finger protein 82.5 0.81 1.8E-05 50.9 2.3 50 26-75 94-153 (1134)
105 KOG3161 Predicted E3 ubiquitin 82.4 0.47 1E-05 51.6 0.5 40 28-69 11-51 (861)
106 KOG0827 Predicted E3 ubiquitin 82.2 0.1 2.3E-06 53.5 -4.3 51 28-78 196-247 (465)
107 KOG1100 Predicted E3 ubiquitin 81.9 0.74 1.6E-05 43.7 1.6 39 31-76 161-200 (207)
108 KOG2034 Vacuolar sorting prote 80.8 0.81 1.8E-05 51.5 1.5 38 24-62 813-850 (911)
109 PF02891 zf-MIZ: MIZ/SP-RING z 80.7 1.6 3.5E-05 32.2 2.7 43 29-74 3-50 (50)
110 COG5109 Uncharacterized conser 80.4 1.1 2.5E-05 45.1 2.3 50 24-73 332-384 (396)
111 PF14446 Prok-RING_1: Prokaryo 79.0 2.2 4.8E-05 32.3 3.0 34 27-60 4-38 (54)
112 KOG4718 Non-SMC (structural ma 78.8 1.2 2.6E-05 42.6 1.9 46 29-76 182-227 (235)
113 KOG3579 Predicted E3 ubiquitin 78.3 1.2 2.7E-05 44.3 1.8 40 22-64 262-305 (352)
114 KOG0309 Conserved WD40 repeat- 76.6 1.6 3.5E-05 48.5 2.2 41 29-70 1029-1069(1081)
115 KOG2068 MOT2 transcription fac 73.9 2.6 5.6E-05 42.7 2.7 50 28-77 249-299 (327)
116 PF14569 zf-UDP: Zinc-binding 72.3 4.2 9E-05 33.1 3.1 52 25-76 6-62 (80)
117 KOG3053 Uncharacterized conser 71.2 3.4 7.4E-05 40.7 2.8 53 26-78 18-84 (293)
118 KOG1829 Uncharacterized conser 71.0 1.7 3.8E-05 47.1 0.8 41 28-71 511-556 (580)
119 KOG1815 Predicted E3 ubiquitin 69.6 3 6.4E-05 43.7 2.2 39 24-64 66-104 (444)
120 KOG0824 Predicted E3 ubiquitin 68.7 1.6 3.4E-05 43.8 -0.1 49 27-77 104-152 (324)
121 KOG3039 Uncharacterized conser 68.7 3.4 7.5E-05 40.5 2.2 33 28-63 43-75 (303)
122 KOG1609 Protein involved in mR 67.4 2.7 5.8E-05 40.9 1.3 50 28-77 78-135 (323)
123 KOG2807 RNA polymerase II tran 66.5 3.8 8.3E-05 41.6 2.1 45 28-72 330-374 (378)
124 PLN02189 cellulose synthase 62.8 6.5 0.00014 45.4 3.3 52 25-76 31-87 (1040)
125 PLN02638 cellulose synthase A 62.3 6.2 0.00013 45.8 3.0 53 24-76 13-70 (1079)
126 PLN02436 cellulose synthase A 59.6 8 0.00017 44.9 3.3 53 24-76 32-89 (1094)
127 KOG1812 Predicted E3 ubiquitin 59.1 4.7 0.0001 41.7 1.3 42 29-71 307-351 (384)
128 PLN02400 cellulose synthase 58.0 7.4 0.00016 45.2 2.7 53 24-76 32-89 (1085)
129 KOG0956 PHD finger protein AF1 56.8 1.3E+02 0.0028 33.9 11.6 53 24-76 113-182 (900)
130 KOG3842 Adaptor protein Pellin 54.8 11 0.00023 38.4 2.9 53 26-78 339-416 (429)
131 PF13901 DUF4206: Domain of un 53.9 8.9 0.00019 36.1 2.2 40 28-72 152-196 (202)
132 KOG2066 Vacuolar assembly/sort 53.9 4.6 0.0001 45.2 0.3 49 22-71 778-830 (846)
133 KOG0802 E3 ubiquitin ligase [P 52.9 6.7 0.00014 42.2 1.3 47 26-79 477-523 (543)
134 KOG3113 Uncharacterized conser 52.3 11 0.00025 37.1 2.6 51 27-79 110-161 (293)
135 PF07191 zinc-ribbons_6: zinc- 52.0 2.4 5.3E-05 33.8 -1.6 41 28-76 1-41 (70)
136 KOG0269 WD40 repeat-containing 51.7 12 0.00027 41.8 3.1 46 30-76 781-828 (839)
137 PF04710 Pellino: Pellino; In 51.3 5 0.00011 41.7 0.0 48 28-78 277-341 (416)
138 KOG2789 Putative Zn-finger pro 51.0 6.4 0.00014 41.0 0.7 33 29-62 75-107 (482)
139 PF09397 Ftsk_gamma: Ftsk gamm 50.6 17 0.00037 28.5 2.9 25 312-336 24-48 (65)
140 KOG3799 Rab3 effector RIM1 and 49.7 4.9 0.00011 36.1 -0.3 28 28-62 65-92 (169)
141 PF04216 FdhE: Protein involve 47.2 2.2 4.8E-05 42.0 -3.2 48 26-74 170-220 (290)
142 PLN02915 cellulose synthase A 47.0 16 0.00034 42.5 3.0 50 27-76 14-68 (1044)
143 PF07975 C1_4: TFIIH C1-like d 45.6 9.4 0.0002 28.6 0.7 41 31-71 2-49 (51)
144 KOG2169 Zn-finger transcriptio 45.3 22 0.00047 39.3 3.8 58 29-90 307-370 (636)
145 KOG1356 Putative transcription 45.0 6 0.00013 44.6 -0.6 47 28-76 229-282 (889)
146 COG5627 MMS21 DNA repair prote 45.0 19 0.00042 35.2 2.9 61 26-88 187-251 (275)
147 PF04710 Pellino: Pellino; In 45.0 7.2 0.00016 40.6 0.0 50 28-77 328-402 (416)
148 smart00249 PHD PHD zinc finger 41.5 15 0.00032 24.8 1.2 31 30-60 1-31 (47)
149 TIGR01562 FdhE formate dehydro 40.5 9.5 0.00021 38.4 0.1 45 28-73 184-232 (305)
150 smart00843 Ftsk_gamma This dom 39.7 27 0.00059 27.3 2.5 25 312-336 23-47 (63)
151 PLN02195 cellulose synthase A 39.6 28 0.00061 40.2 3.6 49 29-77 7-60 (977)
152 TIGR00622 ssl1 transcription f 38.3 25 0.00054 30.5 2.3 45 28-72 55-110 (112)
153 PF10497 zf-4CXXC_R1: Zinc-fin 36.3 47 0.001 28.3 3.6 47 27-74 6-70 (105)
154 KOG1819 FYVE finger-containing 35.6 10 0.00022 40.7 -0.5 56 3-58 876-932 (990)
155 KOG4185 Predicted E3 ubiquitin 34.2 8.5 0.00018 37.6 -1.4 48 27-74 206-265 (296)
156 PF06844 DUF1244: Protein of u 31.8 27 0.00059 27.7 1.3 12 52-63 11-22 (68)
157 PRK03564 formate dehydrogenase 31.5 16 0.00035 36.9 0.1 46 27-73 186-234 (309)
158 KOG3005 GIY-YIG type nuclease 31.5 26 0.00056 34.8 1.5 48 29-76 183-243 (276)
159 PF01363 FYVE: FYVE zinc finge 31.2 19 0.00042 27.4 0.5 37 24-60 5-42 (69)
160 smart00132 LIM Zinc-binding do 30.5 41 0.00088 21.8 1.9 37 30-75 1-37 (39)
161 PF00628 PHD: PHD-finger; Int 30.4 19 0.00042 25.7 0.3 43 30-72 1-49 (51)
162 PF05605 zf-Di19: Drought indu 30.2 22 0.00048 26.2 0.6 36 28-73 2-39 (54)
163 smart00064 FYVE Protein presen 29.9 45 0.00098 25.2 2.3 38 25-62 7-45 (68)
164 KOG2231 Predicted E3 ubiquitin 29.9 37 0.00081 37.8 2.5 44 30-76 2-52 (669)
165 PF06906 DUF1272: Protein of u 29.8 98 0.0021 23.8 4.0 47 29-77 6-53 (57)
166 PF02318 FYVE_2: FYVE-type zin 29.1 34 0.00073 29.4 1.6 46 27-73 53-102 (118)
167 KOG1074 Transcriptional repres 28.9 36 0.00077 38.8 2.1 34 3-38 582-615 (958)
168 KOG3337 Protein similar to pre 28.3 19 0.0004 33.8 -0.1 42 273-314 135-182 (201)
169 PRK11088 rrmA 23S rRNA methylt 26.5 39 0.00084 32.6 1.8 25 29-53 3-27 (272)
170 smart00647 IBR In Between Ring 26.0 13 0.00028 27.4 -1.3 17 45-61 42-58 (64)
171 KOG2231 Predicted E3 ubiquitin 25.5 14 0.00029 41.1 -1.8 49 24-75 74-124 (669)
172 KOG4021 Mitochondrial ribosoma 25.4 42 0.0009 32.1 1.6 35 56-90 98-133 (239)
173 KOG2041 WD40 repeat protein [G 24.9 50 0.0011 37.3 2.3 54 19-76 1122-1185(1189)
174 COG4847 Uncharacterized protei 24.3 56 0.0012 27.8 2.0 35 28-63 6-40 (103)
175 KOG3842 Adaptor protein Pellin 24.2 32 0.00069 35.1 0.7 46 28-76 290-352 (429)
176 KOG1815 Predicted E3 ubiquitin 24.0 23 0.0005 37.1 -0.3 36 29-64 227-267 (444)
177 KOG1245 Chromatin remodeling c 23.0 32 0.00069 41.5 0.5 50 26-75 1106-1159(1404)
178 KOG4218 Nuclear hormone recept 22.8 93 0.002 32.3 3.6 70 22-94 9-93 (475)
179 PLN02248 cellulose synthase-li 22.5 68 0.0015 37.8 2.9 35 45-79 146-180 (1135)
180 PF10146 zf-C4H2: Zinc finger- 22.2 70 0.0015 31.0 2.6 28 53-80 196-223 (230)
181 PTZ00303 phosphatidylinositol 22.0 62 0.0013 36.9 2.4 34 29-62 461-500 (1374)
182 cd07153 Fur_like Ferric uptake 21.8 55 0.0012 27.1 1.6 33 304-336 16-49 (116)
183 PF14353 CpXC: CpXC protein 21.3 78 0.0017 27.1 2.5 46 29-77 2-50 (128)
184 PF03895 YadA_anchor: YadA-lik 20.8 76 0.0016 25.1 2.1 16 314-329 1-16 (78)
185 COG2824 PhnA Uncharacterized Z 20.7 38 0.00081 29.3 0.3 27 30-62 5-31 (112)
186 PF13771 zf-HC5HC2H: PHD-like 20.5 31 0.00068 27.4 -0.2 39 22-60 30-68 (90)
187 KOG2979 Protein involved in DN 20.4 54 0.0012 32.4 1.4 45 26-72 174-220 (262)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.26 E-value=2.2e-12 Score=92.13 Aligned_cols=44 Identities=43% Similarity=1.096 Sum_probs=39.2
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCcc
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR 72 (386)
+.|+||++.|..++.+..++|+|.||..||..|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999997777888889999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.2e-11 Score=119.15 Aligned_cols=49 Identities=39% Similarity=1.007 Sum_probs=44.6
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhcC-CCCCCccccCCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS-SQCPMCWQPISL 77 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s-~~CPlCR~~i~~ 77 (386)
+.|+||+|+|..++.+++|||+|.||..||..|+... ..||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5999999999999999999999999999999999866 559999997753
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.00 E-value=3.1e-10 Score=90.07 Aligned_cols=46 Identities=37% Similarity=1.006 Sum_probs=36.5
Q ss_pred CCCccccccccccC----------CCCceeccCCccccHHHHHHHHhcCCCCCCcc
Q 016591 27 CDDACSICLEDFSE----------SDPSTLTSCKHEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 27 ed~~C~ICle~f~~----------~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR 72 (386)
.++.|+||++.|.+ ..++.+..|+|.||..||..|++...+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35569999999922 23356668999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.96 E-value=4.4e-10 Score=107.78 Aligned_cols=53 Identities=30% Similarity=0.838 Sum_probs=43.1
Q ss_pred CccCCCccccccccccCCCC-----ceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSESDP-----STLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~p-----v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
+...+.+|+||++.+..... ..+++|+|.||..||..|+..+.+||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 44567899999998743221 355689999999999999999999999999875
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.6e-10 Score=109.81 Aligned_cols=53 Identities=34% Similarity=0.871 Sum_probs=45.5
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
..+.+..|.||++.. ..+..++|||.||+.||.+|+..+..||+||..+.+.+
T Consensus 235 i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 345568899999986 45677799999999999999999999999999987653
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.95 E-value=4.5e-10 Score=104.26 Aligned_cols=55 Identities=31% Similarity=0.718 Sum_probs=43.7
Q ss_pred CCCccCCCccccccccccCCCCceeccCCccccHHHHHHHHhc----------------CCCCCCccccCCCCC
Q 016591 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR----------------SSQCPMCWQPISLKD 79 (386)
Q Consensus 22 ~iqd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~----------------s~~CPlCR~~i~~kd 79 (386)
.++...+.+|+||++.+ .+ +++++|+|.||+.||..|+.. ...||+||..+....
T Consensus 12 ~~~~~~~~~CpICld~~--~d-PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 12 LVDSGGDFDCNICLDQV--RD-PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred eccCCCccCCccCCCcC--CC-cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 34556689999999998 44 455699999999999999842 247999999987543
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.93 E-value=1.5e-09 Score=82.14 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=48.1
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEA 88 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~~~~ll~a 88 (386)
++.|+||++.+ .+| ++++|||.||..||..|+.....||+|++.+...++..+..+..
T Consensus 1 ~~~Cpi~~~~~--~~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVM--KDP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcC--CCC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence 46799999999 455 55699999999999999988889999999998777766655543
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.9e-10 Score=105.01 Aligned_cols=53 Identities=32% Similarity=0.711 Sum_probs=43.2
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHhc---CCCCCCccccCCCCCC
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR---SSQCPMCWQPISLKDP 80 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~---s~~CPlCR~~i~~kd~ 80 (386)
+.-.++|.|||+.- +.++++.|||.||+.||..|++. ++.||+|+..+..+.+
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 45678899999987 44556689999999999999974 5679999998876543
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.5e-09 Score=79.53 Aligned_cols=47 Identities=36% Similarity=0.816 Sum_probs=39.6
Q ss_pred CCCccccccccccCCCCceeccCCcc-ccHHHHHHHHhcCCCCCCccccCC
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHE-FHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~-FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
++..|.||++.+ ..+.+++|+|. ||..|+..|+.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467899999987 44677799999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.5e-09 Score=75.74 Aligned_cols=39 Identities=38% Similarity=1.130 Sum_probs=33.8
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlC 71 (386)
|+||++.+ .+++++++|||.||..||..|++....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998 5666888999999999999999988899998
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=3.6e-09 Score=86.38 Aligned_cols=52 Identities=44% Similarity=1.029 Sum_probs=41.2
Q ss_pred CCCcccccccccc----------CCCCceeccCCccccHHHHHHHHhc---CCCCCCccccCCCC
Q 016591 27 CDDACSICLEDFS----------ESDPSTLTSCKHEFHLQCILEWCQR---SSQCPMCWQPISLK 78 (386)
Q Consensus 27 ed~~C~ICle~f~----------~~~pv~ll~CgH~FC~~CI~~Wlq~---s~~CPlCR~~i~~k 78 (386)
.|+.|.||+..|. +.-++..-.|+|.||.+||.+|+.. +..||+||+++.++
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 4788999988883 1224556689999999999999974 47899999998754
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=5.2e-09 Score=106.96 Aligned_cols=59 Identities=31% Similarity=0.540 Sum_probs=48.8
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCChHHHH
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELL 86 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~~~~ll 86 (386)
.+.++.|+||++.| .++ ++++|+|.||..||..|+.....||+|+..+....+..+..+
T Consensus 23 Le~~l~C~IC~d~~--~~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L 81 (397)
T TIGR00599 23 LDTSLRCHICKDFF--DVP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLV 81 (397)
T ss_pred cccccCCCcCchhh--hCc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHH
Confidence 34578999999999 455 467999999999999999888889999999887666665554
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.77 E-value=5.9e-09 Score=72.15 Aligned_cols=44 Identities=43% Similarity=1.106 Sum_probs=38.0
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhc-CCCCCCccccC
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR-SSQCPMCWQPI 75 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~-s~~CPlCR~~i 75 (386)
.|+||++.+ .++..+++|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 566777679999999999999986 77899998754
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.75 E-value=6e-09 Score=74.35 Aligned_cols=38 Identities=37% Similarity=0.923 Sum_probs=28.2
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHhcC----CCCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS----SQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s----~~CPlC 71 (386)
|+||+++| .+| +.++|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~--~~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSE-EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCc-cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 455 555999999999999999643 479988
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.5e-09 Score=103.61 Aligned_cols=52 Identities=29% Similarity=0.902 Sum_probs=42.7
Q ss_pred cCCCccccccccc-cCC---------CCceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 26 ACDDACSICLEDF-SES---------DPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 26 ~ed~~C~ICle~f-~~~---------~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
..|..|.||++.+ ..+ ..++.++|||.||.+|++.|+++..+||+||.++..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3578899999984 222 124677999999999999999999999999998654
No 16
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.2e-09 Score=101.45 Aligned_cols=50 Identities=32% Similarity=0.874 Sum_probs=44.7
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHh-cCCCCCCccccCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPISL 77 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~~ 77 (386)
-.+|+||++.|...+.++++||.|.||..|+..|+. -+..||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 367999999998778899999999999999999998 56789999998864
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.9e-09 Score=94.90 Aligned_cols=54 Identities=35% Similarity=0.687 Sum_probs=44.1
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 80 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~ 80 (386)
+.-..|+|||+.+....+ .-+.|||+||..||+..+.....||+|++.|..+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 344679999999944333 446999999999999999999999999998876654
No 18
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.7e-09 Score=105.27 Aligned_cols=92 Identities=26% Similarity=0.525 Sum_probs=61.1
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHh-cCCCCCCccccCCCCCCChHHHHHHHHHHhhccCCCCCCCc
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPISLKDPTSQELLEAVERERSFRLNPSRNAT 104 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~~kd~~~~~ll~ave~er~~r~~p~~~~~ 104 (386)
.-++.|+|||+++ ...++...|.|.||..||..-+. ....||.||+.+..+ |.++.+|...+.
T Consensus 41 ~~~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--------------rsLr~Dp~fdaL 104 (381)
T KOG0311|consen 41 DIQVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--------------RSLRIDPNFDAL 104 (381)
T ss_pred hhhhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--------------ccCCCCccHHHH
Confidence 3478899999999 56677778999999999988776 568999999988755 333333333333
Q ss_pred c-ccCCCCCCcccccCCCCCCChHHHHHHH
Q 016591 105 I-FRHPTLGDFELQHLPVGANDAELEERII 133 (386)
Q Consensus 105 i-~~~p~lgdfe~q~~pv~~~D~eleEri~ 133 (386)
| ...+.+..|+.....+...|..+..+.+
T Consensus 105 is~i~~sie~~e~~q~~~~ekd~~~~~q~i 134 (381)
T KOG0311|consen 105 ISKIYPSIEEYEAPQPRFMEKDDSAQIQYI 134 (381)
T ss_pred HHHHhccHHHHhccchhHHhhHHHHhHHHH
Confidence 3 1223455555444455555555555533
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.66 E-value=1.5e-08 Score=70.89 Aligned_cols=39 Identities=46% Similarity=1.187 Sum_probs=34.1
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHh--cCCCCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ--RSSQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq--~s~~CPlC 71 (386)
|+||++.+ .++..+++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998 55556889999999999999998 56789998
No 20
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.65 E-value=1e-08 Score=101.67 Aligned_cols=60 Identities=28% Similarity=0.618 Sum_probs=52.2
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEA 88 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~~~~ll~a 88 (386)
+.-+.|.||.++| ..+.+++|+|.||..||+.+|..+..||.|+.++.+.++..+.+++.
T Consensus 21 D~lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~E 80 (442)
T KOG0287|consen 21 DDLLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDE 80 (442)
T ss_pred HHHHHHhHHHHHh---cCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHH
Confidence 4467899999999 55677799999999999999999999999999999888888776643
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.65 E-value=1.3e-08 Score=96.16 Aligned_cols=55 Identities=27% Similarity=0.620 Sum_probs=42.1
Q ss_pred CCccCCCccccccccccCC------CCceeccCCccccHHHHHHHHhcC------CCCCCccccCCC
Q 016591 23 IQDACDDACSICLEDFSES------DPSTLTSCKHEFHLQCILEWCQRS------SQCPMCWQPISL 77 (386)
Q Consensus 23 iqd~ed~~C~ICle~f~~~------~pv~ll~CgH~FC~~CI~~Wlq~s------~~CPlCR~~i~~ 77 (386)
.+...|.+|+||++..-.. ....+.+|+|.||..||..|...+ ..||+||..+..
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3556789999999975221 123566899999999999999742 459999998764
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.56 E-value=5.3e-08 Score=69.73 Aligned_cols=44 Identities=39% Similarity=0.889 Sum_probs=38.7
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccc
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQ 73 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~ 73 (386)
.|+||++.|.....+.++.|+|.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567889999999999999999866788999985
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.5e-08 Score=102.31 Aligned_cols=53 Identities=38% Similarity=0.726 Sum_probs=43.4
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhc-----CCCCCCccccCCCCCCChH
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR-----SSQCPMCWQPISLKDPTSQ 83 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~-----s~~CPlCR~~i~~kd~~~~ 83 (386)
+..|||||+.. ..+..+.|||.||..||..+|.. ...||+||..|..+++.+.
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 78899999987 33455579999999999998853 3579999999998877664
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.49 E-value=1.2e-07 Score=75.07 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=44.0
Q ss_pred CCCccccccccccCCCCceeccCCccccHHHHHHHHhc-CCCCCCccccCCCCCCChHHHHH
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR-SSQCPMCWQPISLKDPTSQELLE 87 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~-s~~CPlCR~~i~~kd~~~~~ll~ 87 (386)
+++.|+||.+.| .+|+ +++|||.|+..||..|+.. ...||+|++.+...++.++..+.
T Consensus 3 ~~f~CpIt~~lM--~dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk 61 (73)
T PF04564_consen 3 DEFLCPITGELM--RDPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALK 61 (73)
T ss_dssp GGGB-TTTSSB---SSEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHH
T ss_pred cccCCcCcCcHh--hCce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHH
Confidence 368899999999 4554 5599999999999999987 88999999999988888876663
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.46 E-value=1.5e-07 Score=62.74 Aligned_cols=38 Identities=37% Similarity=1.081 Sum_probs=32.8
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHh-cCCCCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlC 71 (386)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999985 5567779999999999999998 66779987
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-07 Score=91.80 Aligned_cols=51 Identities=33% Similarity=0.817 Sum_probs=42.5
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHH-HHhcCCC-CCCccccCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILE-WCQRSSQ-CPMCWQPISLKD 79 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~-Wlq~s~~-CPlCR~~i~~kd 79 (386)
.-|..|.||++.. ..+..++|||.||+.||.. |...+.. ||+||+....+.
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4578899999987 4455669999999999999 8877766 999999887654
No 27
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.8e-08 Score=102.13 Aligned_cols=51 Identities=31% Similarity=0.802 Sum_probs=42.9
Q ss_pred cCCCccccccccccCCCC--ceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 26 ACDDACSICLEDFSESDP--STLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~p--v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
..+..|.||+|.+..... +..++|+|.||..|+..|+++..+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 348889999999944322 677799999999999999999999999999544
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.1e-07 Score=85.02 Aligned_cols=46 Identities=33% Similarity=0.752 Sum_probs=40.0
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccc
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQ 73 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~ 73 (386)
..++..|+||++.| .++ ++++|+|.||..||..|+.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~--~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYF--REP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHh--hcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34688999999999 455 88899999999999999986678999995
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.2e-07 Score=74.29 Aligned_cols=51 Identities=41% Similarity=0.948 Sum_probs=38.3
Q ss_pred CCcccccccccc----------CCCCceeccCCccccHHHHHHHHh---cCCCCCCccccCCCC
Q 016591 28 DDACSICLEDFS----------ESDPSTLTSCKHEFHLQCILEWCQ---RSSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~----------~~~pv~ll~CgH~FC~~CI~~Wlq---~s~~CPlCR~~i~~k 78 (386)
+.+|-||.-.|. ++-|+++-.|.|.||.+||.+|+. ....||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 447888887772 223445557999999999999995 346899999988654
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.27 E-value=4.1e-07 Score=88.90 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=45.2
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 80 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~ 80 (386)
+.+.-+.|-||-+.| ..+..++|||.||..||+..|..+..||+||.+..+.-+
T Consensus 21 ~LDs~lrC~IC~~~i---~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 21 GLDSMLRCRICDCRI---SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred cchhHHHhhhhhhee---ecceecccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 444567899999998 445667999999999999999999999999998876543
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.26 E-value=4.9e-07 Score=72.89 Aligned_cols=35 Identities=31% Similarity=0.702 Sum_probs=30.7
Q ss_pred ceeccCCccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 44 STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 44 v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
+..-.|.|.||.+||.+||..+..||++++.+.+.
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 44557999999999999999999999999998654
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=7.7e-07 Score=88.25 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=41.0
Q ss_pred CCccccccccccCCCC--ceeccCCccccHHHHHHHHh-cCCCCCCccccCCCCCCChH
Q 016591 28 DDACSICLEDFSESDP--STLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPISLKDPTSQ 83 (386)
Q Consensus 28 d~~C~ICle~f~~~~p--v~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~~kd~~~~ 83 (386)
+..||||....-.... +.+..|||.||..||..+|. ....||.|+..+....+..+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 5689999995211222 23337999999999999764 55689999999987765554
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.24 E-value=7.3e-07 Score=64.14 Aligned_cols=38 Identities=37% Similarity=0.934 Sum_probs=22.7
Q ss_pred ccccccccc-CCCCceeccCCccccHHHHHHHHhc----CCCCC
Q 016591 31 CSICLEDFS-ESDPSTLTSCKHEFHLQCILEWCQR----SSQCP 69 (386)
Q Consensus 31 C~ICle~f~-~~~pv~ll~CgH~FC~~CI~~Wlq~----s~~CP 69 (386)
|+||++ |. ..+++++|+|||.||.+||..|+.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 63 3456788899999999999999974 34576
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.16 E-value=7.5e-07 Score=69.18 Aligned_cols=58 Identities=31% Similarity=0.694 Sum_probs=30.3
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAV 89 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~~~~ll~av 89 (386)
-+.|++|.+.| .+|+.+..|.|.||..||...+. ..||+|..+....|.+.+..++.+
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence 46799999999 77888889999999999987554 459999999988888887776544
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=9.7e-06 Score=68.40 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=38.4
Q ss_pred CCCcccccccccc------------CCCC--ceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 27 CDDACSICLEDFS------------ESDP--STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 27 ed~~C~ICle~f~------------~~~p--v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
.-+.|+||..-+- ..+. +..-.|.|.||++||.+|++....||+|.+++.+
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 4567999987541 1111 2333699999999999999999999999887754
No 36
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.1e-05 Score=87.49 Aligned_cols=53 Identities=25% Similarity=0.567 Sum_probs=43.8
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHh-cCCCCCCccccCCCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPISLKDPT 81 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~~kd~~ 81 (386)
-.-+.|+.|-.-+ ...+++.|+|.||..||...+. +...||.|-..|...|+.
T Consensus 641 K~~LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 641 KELLKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred HhceeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 3457899999777 4456779999999999999986 667899999999877654
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=7e-06 Score=79.73 Aligned_cols=53 Identities=34% Similarity=0.805 Sum_probs=41.6
Q ss_pred cCCCccccccccccCCC-------CceeccCCccccHHHHHHHHh--cCCCCCCccccCCCC
Q 016591 26 ACDDACSICLEDFSESD-------PSTLTSCKHEFHLQCILEWCQ--RSSQCPMCWQPISLK 78 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~-------pv~ll~CgH~FC~~CI~~Wlq--~s~~CPlCR~~i~~k 78 (386)
-+|..|+||-..+.... ....+.|+|.||..||+-|+. ++.+||.|++.+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45788999998774332 345679999999999999985 578999998877543
No 38
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.69 E-value=1e-05 Score=80.43 Aligned_cols=50 Identities=30% Similarity=0.615 Sum_probs=43.7
Q ss_pred CCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
.-.+|.+|-.+| .+..++..|.|.||..||...+.....||.|...+...
T Consensus 14 ~~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 356799999999 66778889999999999999999999999998877644
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.2e-05 Score=77.31 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=39.6
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhc-CCCCCCccccCCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR-SSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~-s~~CPlCR~~i~~k 78 (386)
+.+|+||+... ..++.++|+|.||+.||+--.+. ...|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56799999886 44577799999999999977664 55699999999754
No 40
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.64 E-value=8.7e-06 Score=64.23 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=23.6
Q ss_pred CCcccccccccc-CCC-Cc-ee--ccCCccccHHHHHHHHhc---C--------CCCCCccccCCC
Q 016591 28 DDACSICLEDFS-ESD-PS-TL--TSCKHEFHLQCILEWCQR---S--------SQCPMCWQPISL 77 (386)
Q Consensus 28 d~~C~ICle~f~-~~~-pv-~l--l~CgH~FC~~CI~~Wlq~---s--------~~CPlCR~~i~~ 77 (386)
+..|.||+..+. .+. +. .. ..|++.||..||.+||.. . ..||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999999875 222 22 22 269999999999999952 1 259999998753
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.7e-05 Score=77.68 Aligned_cols=58 Identities=36% Similarity=0.835 Sum_probs=43.2
Q ss_pred cCCCccCCCccccccccccCCC-----CceeccCCccccHHHHHHHHh--c-----CCCCCCccccCCCC
Q 016591 21 GGIQDACDDACSICLEDFSESD-----PSTLTSCKHEFHLQCILEWCQ--R-----SSQCPMCWQPISLK 78 (386)
Q Consensus 21 g~iqd~ed~~C~ICle~f~~~~-----pv~ll~CgH~FC~~CI~~Wlq--~-----s~~CPlCR~~i~~k 78 (386)
..++...+.+|.||++.+.... --.+.+|.|.||..||..|-+ . .+.||.||......
T Consensus 154 ~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 154 FALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 3556678999999999873322 112346999999999999984 3 47899999877643
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.7e-05 Score=79.04 Aligned_cols=62 Identities=23% Similarity=0.614 Sum_probs=49.0
Q ss_pred hhhhhhhhcCCCccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 13 TSAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 13 ~sa~a~~eg~iqd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
...-+...+..+...++.|.||+..| .+++.++|||.||..||..-+.....||.||..+..
T Consensus 69 ~~~~~~~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 69 STPKALLSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hhhhhhhccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33344445555667799999999998 444555999999999999988888899999999875
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.4e-05 Score=80.14 Aligned_cols=49 Identities=35% Similarity=0.881 Sum_probs=38.2
Q ss_pred CCccccccccccC---CCC-----------ceeccCCccccHHHHHHHHh-cCCCCCCccccCC
Q 016591 28 DDACSICLEDFSE---SDP-----------STLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPIS 76 (386)
Q Consensus 28 d~~C~ICle~f~~---~~p-----------v~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~ 76 (386)
...|+||+..+.- +.+ -.++||.|.||..|++.|.. .+-.||.||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4569999987621 111 24569999999999999998 5669999999886
No 44
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.50 E-value=9.4e-05 Score=54.52 Aligned_cols=42 Identities=24% Similarity=0.774 Sum_probs=31.6
Q ss_pred ccccccccccCCCCceeccCC-----ccccHHHHHHHHhc--CCCCCCcc
Q 016591 30 ACSICLEDFSESDPSTLTSCK-----HEFHLQCILEWCQR--SSQCPMCW 72 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~Cg-----H~FC~~CI~~Wlq~--s~~CPlCR 72 (386)
.|-||++...+ +.+.+.||. |.||..|+..|+.. ...||+|+
T Consensus 1 ~CrIC~~~~~~-~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDE-GDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCC-CCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999983333 344566885 88999999999964 45899994
No 45
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.47 E-value=3.6e-05 Score=84.86 Aligned_cols=52 Identities=29% Similarity=0.879 Sum_probs=39.2
Q ss_pred cCCCcccccccccc--CC-CC-ceeccCCccccHHHHHHHHhc--CCCCCCccccCCC
Q 016591 26 ACDDACSICLEDFS--ES-DP-STLTSCKHEFHLQCILEWCQR--SSQCPMCWQPISL 77 (386)
Q Consensus 26 ~ed~~C~ICle~f~--~~-~p-v~ll~CgH~FC~~CI~~Wlq~--s~~CPlCR~~i~~ 77 (386)
+--.+|+||+..+. +. -| -++..|+|.||..|+..|+.. +..||+||..|..
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44567999998873 11 11 255579999999999999974 5789999988753
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.5e-05 Score=58.20 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=37.5
Q ss_pred cCCCccccccccccCCCCceeccCCc-cccHHHHHHHHh-cCCCCCCccccCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKH-EFHLQCILEWCQ-RSSQCPMCWQPIS 76 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH-~FC~~CI~~Wlq-~s~~CPlCR~~i~ 76 (386)
+.+++|.||++.. ...++.-||| -.|+.|-.+.++ .+..||+||.++.
T Consensus 5 ~~~dECTICye~p---vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHP---VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCc---chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 3458899999875 2345557999 579999887776 6789999999875
No 47
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.35 E-value=0.00024 Score=72.47 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=39.7
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhc--CCCCCCccccCCCCC
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR--SSQCPMCWQPISLKD 79 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~--s~~CPlCR~~i~~kd 79 (386)
-|.||-+. ++.+.+-+|||..|..|+..|... ...||+||.+|.-..
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 48999987 366888899999999999999853 578999999997553
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00013 Score=73.28 Aligned_cols=47 Identities=28% Similarity=0.722 Sum_probs=39.4
Q ss_pred CCCccccccccccCCCCceeccCCc-cccHHHHHHHHhcCCCCCCccccCC
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKH-EFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH-~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
.-.+|.||+... ...+++||.| ..|..|.+........||+||++|.
T Consensus 289 ~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 356799999986 5578889999 6799999887767788999999885
No 49
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00012 Score=74.33 Aligned_cols=48 Identities=25% Similarity=0.769 Sum_probs=34.0
Q ss_pred CccccccccccCCCCceec-cCCccccHHHHHHHHhc---CCCCCCccccCC
Q 016591 29 DACSICLEDFSESDPSTLT-SCKHEFHLQCILEWCQR---SSQCPMCWQPIS 76 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll-~CgH~FC~~CI~~Wlq~---s~~CPlCR~~i~ 76 (386)
..|.||.+.+-....+..+ .|||.||..|+..|++. ...||+|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 3599996555222233333 49999999999999985 258999984443
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.32 E-value=4.5e-05 Score=82.76 Aligned_cols=53 Identities=17% Similarity=0.448 Sum_probs=42.9
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
+....|+||+..+.+.....-.+|.|.||..||..|.....+||+||..|...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 45566889988875544445558999999999999999999999999988643
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.22 E-value=0.00013 Score=75.27 Aligned_cols=51 Identities=31% Similarity=0.714 Sum_probs=38.4
Q ss_pred CccCCCccccccccccCCC-CceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
...+-.+|+|||+-+.... -+..+.|.|.||..|+..|+. .+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3345678999999983222 134557999999999999985 46999987655
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.10 E-value=0.00024 Score=54.05 Aligned_cols=43 Identities=35% Similarity=0.740 Sum_probs=30.6
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHh--cCCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ--RSSQCPM 70 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq--~s~~CPl 70 (386)
...+.|||.+..| .+|++-..|+|.|....|..|++ ....||+
T Consensus 9 ~~~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3468899999999 78888889999999999999994 3567998
No 53
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00042 Score=67.72 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=40.8
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHh--cCCCCCCccccCC
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ--RSSQCPMCWQPIS 76 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq--~s~~CPlCR~~i~ 76 (386)
...+.+|++|-+.. ..|....+|+|.||+.||..-+. ....||.|-....
T Consensus 236 ~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34578899999876 56777878999999999998765 3589999977664
No 54
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.02 E-value=0.00019 Score=70.83 Aligned_cols=51 Identities=31% Similarity=0.818 Sum_probs=41.9
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhc-----------------------CCCCCCccccCCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR-----------------------SSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~-----------------------s~~CPlCR~~i~~k 78 (386)
...|.|||.-|..++..+++.|.|.||..|+-+++.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4679999999987777899999999999999887721 13599999988754
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00052 Score=70.20 Aligned_cols=54 Identities=30% Similarity=0.781 Sum_probs=40.5
Q ss_pred CCCccccccccccCC--CCceeccCCccccHHHHHHHHhc--CCCCCCccccCCCCCC
Q 016591 27 CDDACSICLEDFSES--DPSTLTSCKHEFHLQCILEWCQR--SSQCPMCWQPISLKDP 80 (386)
Q Consensus 27 ed~~C~ICle~f~~~--~pv~ll~CgH~FC~~CI~~Wlq~--s~~CPlCR~~i~~kd~ 80 (386)
+-.+|+||++.+... ..+..+.|+|.|..+||+.|+.+ ...||.|...-....+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence 456799999987322 23667789999999999999953 3579999766554443
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.95 E-value=0.00039 Score=71.51 Aligned_cols=55 Identities=29% Similarity=0.657 Sum_probs=45.7
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCC
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPT 81 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~ 81 (386)
.+++..|+||...+ .+++..+.|+|.||..|+..|+..+..||.|+..+......
T Consensus 18 ~~~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 35689999999998 55655468999999999999999999999998887655433
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00084 Score=66.20 Aligned_cols=61 Identities=30% Similarity=0.491 Sum_probs=46.3
Q ss_pred CCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVE 90 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~~~~~ll~ave 90 (386)
-.+.|-||..+| ..| +++.|+|.||..|...-++....|.+|-+.+.-.-....+++..+.
T Consensus 240 ~Pf~c~icr~~f--~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 240 LPFKCFICRKYF--YRP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLK 300 (313)
T ss_pred CCcccccccccc--ccc-hhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHH
Confidence 355699999999 444 4559999999999999999989999998887654444444444443
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.002 Score=61.63 Aligned_cols=52 Identities=31% Similarity=0.663 Sum_probs=42.7
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhc--------CCCCCCccccCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR--------SSQCPMCWQPISLK 78 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~--------s~~CPlCR~~i~~k 78 (386)
+.+..|.+|-..+..++.+++ -|.|.||++|+.+|... ..+||.|.++|-..
T Consensus 48 DY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 567789999999877777666 89999999999999742 36899998887543
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.67 E-value=0.0011 Score=62.17 Aligned_cols=48 Identities=25% Similarity=0.634 Sum_probs=40.4
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
.-.+.|-||-.+| ..++++.|||.||..|...-++....|-+|-+...
T Consensus 194 ~IPF~C~iCKkdy---~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 194 KIPFLCGICKKDY---ESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CCceeehhchhhc---cchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 3467899999998 44566699999999999998888899999977654
No 60
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0016 Score=65.71 Aligned_cols=54 Identities=20% Similarity=0.466 Sum_probs=44.9
Q ss_pred cCCCccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 21 GGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 21 g~iqd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
+.+.+.+|..|+||+.-- ...+..||+|.-|+.||...+-..+.|=+|+..+..
T Consensus 415 ~~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 455778899999998754 334666999999999999999999999999887753
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.25 E-value=0.0031 Score=72.55 Aligned_cols=52 Identities=33% Similarity=0.715 Sum_probs=41.4
Q ss_pred CCCccccccccccCCCCceeccCCccccHHHHHHHHhcC----------CCCCCccccCCCC
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS----------SQCPMCWQPISLK 78 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s----------~~CPlCR~~i~~k 78 (386)
-|+.|.||+.+-....|...+.|+|.||++|.+..+++. -.||+|+.+|...
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 578999999875555677777999999999999877643 2699999988643
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.12 E-value=0.003 Score=66.63 Aligned_cols=52 Identities=25% Similarity=0.680 Sum_probs=40.5
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHh-----cCCCCCCccccCCCC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-----RSSQCPMCWQPISLK 78 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-----~s~~CPlCR~~i~~k 78 (386)
.+..+..|.+|-+.- +......|.|.||..||.++.. ...+||.|-..+...
T Consensus 532 enk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 345577899999886 3345569999999999999984 247899998877654
No 63
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.91 E-value=0.0077 Score=60.66 Aligned_cols=56 Identities=20% Similarity=0.457 Sum_probs=40.3
Q ss_pred ccCCCccccccccccCCCC-ceeccCCccccHHHHHHHHhc-CCCCCCccccCCCCCC
Q 016591 25 DACDDACSICLEDFSESDP-STLTSCKHEFHLQCILEWCQR-SSQCPMCWQPISLKDP 80 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~p-v~ll~CgH~FC~~CI~~Wlq~-s~~CPlCR~~i~~kd~ 80 (386)
+++|+.|++|++.+...+. ..-.+||-..|.-|+....+. ...||.||..+..++.
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3456679999998743332 344479988899998776653 5789999988876543
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0078 Score=58.29 Aligned_cols=54 Identities=15% Similarity=0.343 Sum_probs=45.2
Q ss_pred CCCccccccccccCCCCce-eccCCccccHHHHHHHHhcCCCCCCccccCCCCCC
Q 016591 27 CDDACSICLEDFSESDPST-LTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 80 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~-ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd~ 80 (386)
....|+||.+.+.+.-+.. +-+|||+||.+|...+......||+|-.++..+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 4677999999997665544 44899999999999999989999999998886653
No 65
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.75 E-value=0.0033 Score=64.23 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=40.3
Q ss_pred ccCCCccccccccccCCC-CceeccCCccccHHHHHHHHhcC--CCCCCccccC
Q 016591 25 DACDDACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQRS--SQCPMCWQPI 75 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq~s--~~CPlCR~~i 75 (386)
.+.++.|..|-+.+...+ ....+||.|.||..|+.+++... ..||.||+..
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 355788999999884433 46778999999999999999754 6899998543
No 66
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.70 E-value=0.0097 Score=43.97 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=22.9
Q ss_pred cccccccccCCC-CceeccCCccccHHHHHHHHh-cCCCCCCccccC
Q 016591 31 CSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPI 75 (386)
Q Consensus 31 C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i 75 (386)
|++|.+.+...+ ...--+|++.+|..|+...+. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999883222 233336899999999999886 578899999875
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.64 E-value=0.0082 Score=60.61 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=40.6
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHH--HhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEW--CQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~W--lq~s~~CPlCR~~i~ 76 (386)
+|+++..|.||-+.+ .-..++||+|..|.-|-.+. |...+.||+||..+.
T Consensus 57 tDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 57 TDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 667778899999876 44677899999999998765 456789999997764
No 68
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0078 Score=60.90 Aligned_cols=47 Identities=30% Similarity=0.637 Sum_probs=34.3
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
.+..++.|.||++.. .+ ...++|||..| |+..... -..||+||+.|.
T Consensus 301 ~~~~p~lcVVcl~e~--~~-~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEP--KS-AVFVPCGHVCC--CTLCSKH-LPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCc--cc-eeeecCCcEEE--chHHHhh-CCCCchhHHHHH
Confidence 345577799999987 33 56669999977 7765433 344999998775
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.38 E-value=0.015 Score=56.53 Aligned_cols=54 Identities=22% Similarity=0.486 Sum_probs=41.4
Q ss_pred ccCCCccccccccccCCCC-ceeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 25 DACDDACSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~p-v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
....+.|||+...|..... +.+.+|||+|+..||.+.- ....||+|-.+|...|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 3557789999999844333 4455899999999999974 4567999999887554
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.34 E-value=0.014 Score=58.02 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=38.3
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHh-cCCCCCCc-cccCCCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMC-WQPISLK 78 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlC-R~~i~~k 78 (386)
+.|+.|..++ .+++....|+|.||..||..-|. ..+.||.| |+.+...
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 8899999988 66777667999999999998775 56789999 4444433
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0025 Score=62.91 Aligned_cols=44 Identities=27% Similarity=0.620 Sum_probs=33.6
Q ss_pred cCCCccccccccccCCCCceeccCCc-cccHHHHHHHHhcCCCCCCccccCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKH-EFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH-~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
+.+.-|.||++.. ...+.|+||| +-|.+|-... ..||+||+.+.
T Consensus 298 ~~~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 298 ATRRLCAICMDAP---RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred hHHHHHHHHhcCC---cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 3467799999986 4456779999 6788886443 48999998764
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.019 Score=56.27 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=39.3
Q ss_pred CCccccccccccCCC---CceeccCCccccHHHHHHHHhc-CCCCCCccccCC
Q 016591 28 DDACSICLEDFSESD---PSTLTSCKHEFHLQCILEWCQR-SSQCPMCWQPIS 76 (386)
Q Consensus 28 d~~C~ICle~f~~~~---pv~ll~CgH~FC~~CI~~Wlq~-s~~CPlCR~~i~ 76 (386)
-..|-||-++|...+ .++++.|||.||..|+...+.. .-.||.||....
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE 55 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence 357999999996553 3678889999999999887764 457999999863
No 73
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.11 E-value=0.0073 Score=58.11 Aligned_cols=46 Identities=33% Similarity=0.711 Sum_probs=34.6
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
.|.-|..--. .++..++.|.|+||..|...-. ...||+|++.+...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeeee
Confidence 4887875543 6788999999999999975422 23899999987643
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.029 Score=57.87 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=36.2
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhc--------CCCCCCccc
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR--------SSQCPMCWQ 73 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~--------s~~CPlCR~ 73 (386)
-..|.||++..........++|+|+||..|+..++.- .-.||-|.-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4679999999765577888999999999999999842 235776643
No 75
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.019 Score=53.25 Aligned_cols=52 Identities=31% Similarity=0.703 Sum_probs=35.8
Q ss_pred CCCccccccccccCCCC----ceeccCCccccHHHHHHHHhcC-----------CCCCCccccCCCC
Q 016591 27 CDDACSICLEDFSESDP----STLTSCKHEFHLQCILEWCQRS-----------SQCPMCWQPISLK 78 (386)
Q Consensus 27 ed~~C~ICle~f~~~~p----v~ll~CgH~FC~~CI~~Wlq~s-----------~~CPlCR~~i~~k 78 (386)
+-..|-||+.+-.++.. .--..|+..||.-|+..||..- ..||+|-.++..+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 34457788766433321 1233799999999999999631 3699999888654
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.04 Score=55.37 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=37.9
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i 75 (386)
-....|+||+... .++.++.--|-+||+.||..++.....||+--.++
T Consensus 298 ~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3456799999876 45555555699999999999999999999865544
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.04 E-value=0.036 Score=61.50 Aligned_cols=46 Identities=39% Similarity=0.916 Sum_probs=35.6
Q ss_pred CCccccccccccCCCCc-eeccCCccccHHHHHHHHhcC-------CCCCCccc
Q 016591 28 DDACSICLEDFSESDPS-TLTSCKHEFHLQCILEWCQRS-------SQCPMCWQ 73 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv-~ll~CgH~FC~~CI~~Wlq~s-------~~CPlCR~ 73 (386)
..+|.||++.+....++ ....|.|+||+.||..|.... -.||.|+.
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 56799999998655543 344699999999999998531 36999973
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.026 Score=62.54 Aligned_cols=42 Identities=26% Similarity=0.740 Sum_probs=35.5
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i 75 (386)
..|.+|-..+ +-|.+.-.|+|.||.+|+. .....||.|+..+
T Consensus 841 skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 5799999988 6788888999999999987 4567899997743
No 79
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.85 E-value=0.024 Score=46.71 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=27.7
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHH
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCIL 59 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~ 59 (386)
.-..+..|+||...|.. ....+.||+|.||..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 33557779999999854 456677999999999974
No 80
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.69 E-value=0.035 Score=54.81 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=41.3
Q ss_pred CccCCCccccccccccCC-CCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSES-DPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~-~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
....+..||||.+.+... ..+..++|+|..|..|+.+.......||+|.+ +.
T Consensus 154 e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~ 206 (276)
T KOG1940|consen 154 ERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PG 206 (276)
T ss_pred hhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hH
Confidence 334466699999987544 34677799999999999999877799999987 54
No 81
>PHA03096 p28-like protein; Provisional
Probab=93.69 E-value=0.035 Score=55.09 Aligned_cols=45 Identities=31% Similarity=0.621 Sum_probs=31.5
Q ss_pred CccccccccccCCCC-----ceeccCCccccHHHHHHHHhc---CCCCCCccc
Q 016591 29 DACSICLEDFSESDP-----STLTSCKHEFHLQCILEWCQR---SSQCPMCWQ 73 (386)
Q Consensus 29 ~~C~ICle~f~~~~p-----v~ll~CgH~FC~~CI~~Wlq~---s~~CPlCR~ 73 (386)
..|.||++....... -.+..|.|.||..||..|... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 569999998643211 244479999999999999853 234555544
No 82
>PHA02862 5L protein; Provisional
Probab=93.47 E-value=0.059 Score=48.50 Aligned_cols=47 Identities=23% Similarity=0.706 Sum_probs=34.8
Q ss_pred CCccccccccccCCCCceeccCC-----ccccHHHHHHHHh--cCCCCCCccccCCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCK-----HEFHLQCILEWCQ--RSSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~Cg-----H~FC~~CI~~Wlq--~s~~CPlCR~~i~~k 78 (386)
.+.|=||++.- ++.. .||. ...|..|+.+|+. ++..|++|+.++..+
T Consensus 2 ~diCWIC~~~~--~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVC--DERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcC--CCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 46799999975 2222 3553 4689999999996 456899999888644
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.25 E-value=0.086 Score=48.13 Aligned_cols=48 Identities=25% Similarity=0.756 Sum_probs=34.5
Q ss_pred cCCCccccccccccCCCCceeccCC--c---cccHHHHHHHHhc--CCCCCCccccCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCK--H---EFHLQCILEWCQR--SSQCPMCWQPISL 77 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~Cg--H---~FC~~CI~~Wlq~--s~~CPlCR~~i~~ 77 (386)
..+..|-||.+.- +... .||. . ..|..|+..|+.. ...|++|..++..
T Consensus 6 ~~~~~CRIC~~~~--~~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEY--DVVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCC--CCcc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4577899999885 2222 3554 4 4599999999964 4689999887753
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.04 Score=55.04 Aligned_cols=41 Identities=27% Similarity=0.652 Sum_probs=27.9
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccC
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i 75 (386)
|--|--.+ ..--++.+|+|+||++|... ...+.||.|-..+
T Consensus 93 Cd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 93 CDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred ecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 55564433 22246779999999999654 4467899996544
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.96 E-value=0.041 Score=60.49 Aligned_cols=46 Identities=30% Similarity=0.792 Sum_probs=37.4
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhc--CCCCCCccccCCCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR--SSQCPMCWQPISLK 78 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~--s~~CPlCR~~i~~k 78 (386)
..|.||++ . +...++.|+|.||..|+...++. ...||+||..+..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 4 66777799999999999988864 24699998877543
No 86
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.42 E-value=0.05 Score=40.17 Aligned_cols=44 Identities=32% Similarity=0.721 Sum_probs=25.4
Q ss_pred ccccccccccCCCCceeccCC-ccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 30 ACSICLEDFSESDPSTLTSCK-HEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~Cg-H~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
.|--|+-.. . .+..|. |..|..|+...+..+..||+|+.+++.+
T Consensus 4 nCKsCWf~~----k-~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN----K-GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S------S-SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC----C-CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 366666432 1 233675 9999999999999999999999988643
No 87
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.12 Score=53.18 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=40.3
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcC---CCCCCcccc
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS---SQCPMCWQP 74 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s---~~CPlCR~~ 74 (386)
..-+.|||=.+.-.+.+|+..+.|||+.+.+-|....++. +.||+|-..
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 3356799988887778899999999999999999988643 679999543
No 88
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.03 E-value=0.099 Score=46.47 Aligned_cols=45 Identities=18% Similarity=0.446 Sum_probs=31.2
Q ss_pred CCccccccccccCCCCceeccCC------ccccHHHHHHHHhcCCCCCCcc
Q 016591 28 DDACSICLEDFSESDPSTLTSCK------HEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~Cg------H~FC~~CI~~Wlq~s~~CPlCR 72 (386)
..+|.||++.+...+-++.+.|+ |.||..|+.+|-.....=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 57899999999553344444554 8899999999964444444443
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.69 E-value=0.094 Score=37.64 Aligned_cols=41 Identities=24% Similarity=0.709 Sum_probs=22.1
Q ss_pred cccccccccCCCCceeccCCccccHHHHHHHHhcCC--CCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSS--QCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~--~CPlC 71 (386)
|.+|.+....+..-....|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888774442222225888999999999997544 69987
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.62 E-value=0.14 Score=52.33 Aligned_cols=32 Identities=25% Similarity=0.782 Sum_probs=25.4
Q ss_pred cCCccccHHHHHHHHhc-------------CCCCCCccccCCCCC
Q 016591 48 SCKHEFHLQCILEWCQR-------------SSQCPMCWQPISLKD 79 (386)
Q Consensus 48 ~CgH~FC~~CI~~Wlq~-------------s~~CPlCR~~i~~kd 79 (386)
.|...+|..|+-+|+.. +..||+||+.|...|
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 47778899999999832 346999999998654
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.57 E-value=0.11 Score=39.45 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=33.3
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
+..|-.|...- ..-.+++|+|..|..|+.-+ +-..||+|-.+|...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 44566676542 34567799999999996543 4467999988886543
No 92
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.53 E-value=0.11 Score=37.86 Aligned_cols=40 Identities=30% Similarity=0.902 Sum_probs=25.8
Q ss_pred cccccccccCCCCceeccCC--c---cccHHHHHHHHh--cCCCCCCc
Q 016591 31 CSICLEDFSESDPSTLTSCK--H---EFHLQCILEWCQ--RSSQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~Cg--H---~FC~~CI~~Wlq--~s~~CPlC 71 (386)
|-||++.-.... ..+.||. - ..|..|+..|+. ....|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998864433 3444664 3 679999999997 45679887
No 93
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.19 Score=49.78 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=38.1
Q ss_pred ccccccccc--cCCCCceeccCCccccHHHHHHHHh-cCCCCCCccccCCCCCCChH
Q 016591 30 ACSICLEDF--SESDPSTLTSCKHEFHLQCILEWCQ-RSSQCPMCWQPISLKDPTSQ 83 (386)
Q Consensus 30 ~C~ICle~f--~~~~pv~ll~CgH~FC~~CI~~Wlq-~s~~CPlCR~~i~~kd~~~~ 83 (386)
.|++|.-.. ...-.+.+-+|+|..|-.|+...+. +...||.|-..+....+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q 58 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQ 58 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchh
Confidence 589997652 1111234448999999999999886 56789999887765555444
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.46 E-value=0.087 Score=60.86 Aligned_cols=46 Identities=30% Similarity=0.663 Sum_probs=37.8
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i 75 (386)
-..|.||++.+. ..-.+..|+|.||..|+..|+..+..||+|+...
T Consensus 1153 ~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 447999999983 2334557999999999999999999999997443
No 95
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.18 E-value=0.064 Score=51.99 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=37.4
Q ss_pred cCCCccccccccc--cCCCCceecc-CCccccHHHHHHHHhc-CCCCC--CccccCCCCCC
Q 016591 26 ACDDACSICLEDF--SESDPSTLTS-CKHEFHLQCILEWCQR-SSQCP--MCWQPISLKDP 80 (386)
Q Consensus 26 ~ed~~C~ICle~f--~~~~pv~ll~-CgH~FC~~CI~~Wlq~-s~~CP--lCR~~i~~kd~ 80 (386)
..|..||||..+. .+...+.+-| |.|..|-.|+.+.+.. ...|| -|-+.+....+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf 68 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKF 68 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcc
Confidence 3467899998763 1111233335 9999999999999864 46899 78665544333
No 96
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.56 E-value=0.18 Score=56.04 Aligned_cols=53 Identities=28% Similarity=0.708 Sum_probs=40.5
Q ss_pred cCCCccccccccccCCCCceeccCCc-----cccHHHHHHHHh--cCCCCCCccccCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKH-----EFHLQCILEWCQ--RSSQCPMCWQPISLKD 79 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH-----~FC~~CI~~Wlq--~s~~CPlCR~~i~~kd 79 (386)
+++..|-||...-..++|... ||++ ..|..|+.+|+. ....|-+|..++..++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 346789999987655666655 7764 579999999997 4567999998887654
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.37 E-value=0.2 Score=50.10 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=35.6
Q ss_pred ccCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 25 DACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
+..-++||||.+.+ ..|+..-.=||..|..|-. +....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l--~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPL--SPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccC--cccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34456799999998 5555553447999999964 45678999999987
No 98
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=88.42 E-value=0.27 Score=51.27 Aligned_cols=35 Identities=14% Similarity=0.424 Sum_probs=28.9
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHh
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ 63 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq 63 (386)
++++.|+||...| .+ +.+++|+|..|.-|....+.
T Consensus 2 eeelkc~vc~~f~--~e-piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFY--RE-PIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhc--cC-ceEeecccHHHHHHHHhhcc
Confidence 5689999999988 44 45569999999999987764
No 99
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.52 E-value=0.54 Score=42.99 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=10.1
Q ss_pred CCCccccccccc
Q 016591 27 CDDACSICLEDF 38 (386)
Q Consensus 27 ed~~C~ICle~f 38 (386)
+|..|+||+|..
T Consensus 1 ed~~CpICme~P 12 (162)
T PF07800_consen 1 EDVTCPICMEHP 12 (162)
T ss_pred CCccCceeccCC
Confidence 467899999986
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=0.37 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.633 Sum_probs=26.1
Q ss_pred cCCccccHHHHHHHHh-------------cCCCCCCccccCCCCCC
Q 016591 48 SCKHEFHLQCILEWCQ-------------RSSQCPMCWQPISLKDP 80 (386)
Q Consensus 48 ~CgH~FC~~CI~~Wlq-------------~s~~CPlCR~~i~~kd~ 80 (386)
-|...+|..|+-.|+. ++.+||+||+.+...|.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 4778889999999983 34689999999886543
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.77 E-value=0.77 Score=40.93 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=36.9
Q ss_pred CCCccccccccccCCCCcee-ccCCccccHHHHHHHHhc---CCCCCCccccCCCC
Q 016591 27 CDDACSICLEDFSESDPSTL-TSCKHEFHLQCILEWCQR---SSQCPMCWQPISLK 78 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~l-l~CgH~FC~~CI~~Wlq~---s~~CPlCR~~i~~k 78 (386)
.--+|.||.|...+..-+.- --||-..|.-|-...|+. ...||.|+..|...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45579999998633221111 149999999999887763 56899999988643
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.39 E-value=0.36 Score=53.04 Aligned_cols=48 Identities=31% Similarity=0.694 Sum_probs=37.2
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHh---cCCCCCCccccCCCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ---RSSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq---~s~~CPlCR~~i~~k 78 (386)
+.+|+||+..+ .++ ..+.|.|.||..|+..-+. ....||+|+..+...
T Consensus 21 ~lEc~ic~~~~--~~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHV--KEP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEe--ecc-chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 78899999988 444 5569999999999986554 356899998666543
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=0.48 Score=48.89 Aligned_cols=38 Identities=26% Similarity=0.608 Sum_probs=27.1
Q ss_pred CCCcccccc-ccccCCCCceeccCCccccHHHHHHHHhc
Q 016591 27 CDDACSICL-EDFSESDPSTLTSCKHEFHLQCILEWCQR 64 (386)
Q Consensus 27 ed~~C~ICl-e~f~~~~pv~ll~CgH~FC~~CI~~Wlq~ 64 (386)
...+|.||. +.........+..|+|.||..|+...++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 356799999 44322222235689999999999998863
No 104
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.51 E-value=0.81 Score=50.93 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=33.8
Q ss_pred cCCCccccccccccCCC-Cceec---cCCccccHHHHHHHHhc------CCCCCCccccC
Q 016591 26 ACDDACSICLEDFSESD-PSTLT---SCKHEFHLQCILEWCQR------SSQCPMCWQPI 75 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~-pv~ll---~CgH~FC~~CI~~Wlq~------s~~CPlCR~~i 75 (386)
...+.|.||.-.|...+ -.-.+ .|+|.||.-||..|..+ ...|++|..-|
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34567888888775411 12222 49999999999999853 34688886544
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=0.47 Score=51.64 Aligned_cols=40 Identities=25% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCccccccccccCCC-CceeccCCccccHHHHHHHHhcCCCCC
Q 016591 28 DDACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQRSSQCP 69 (386)
Q Consensus 28 d~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq~s~~CP 69 (386)
-+.|.||+..|.... .++-+-|+|..|.+|+..... .+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 466999988774332 345568999999999987654 4577
No 106
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=0.1 Score=53.54 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.3
Q ss_pred CCccccccccccCC-CCceeccCCccccHHHHHHHHhcCCCCCCccccCCCC
Q 016591 28 DDACSICLEDFSES-DPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~~~-~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~k 78 (386)
...|.||.+.|+.. +.+..+.|+|.+|..||..|+.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45699999988433 3456668999999999999999888899999888643
No 107
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.95 E-value=0.74 Score=43.72 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=28.1
Q ss_pred cccccccccCCCCceeccCCc-cccHHHHHHHHhcCCCCCCccccCC
Q 016591 31 CSICLEDFSESDPSTLTSCKH-EFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 31 C~ICle~f~~~~pv~ll~CgH-~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
|-+|.+.- ..+.++||.| .+|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 88888763 5578889998 677777432 456999976543
No 108
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.78 E-value=0.81 Score=51.45 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=30.3
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHH
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWC 62 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wl 62 (386)
.-+-.+.|.||...|.. .+-.+-+|||.||..||....
T Consensus 813 v~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 33557889999988744 566777999999999998765
No 109
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=80.73 E-value=1.6 Score=32.19 Aligned_cols=43 Identities=21% Similarity=0.514 Sum_probs=22.2
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHh-----cCCCCCCcccc
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ-----RSSQCPMCWQP 74 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq-----~s~~CPlCR~~ 74 (386)
+.|+|....+ ..|++...|.|.-|++- ..|+. ..-.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999888 67888889999876543 34442 23469999763
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.42 E-value=1.1 Score=45.08 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=39.3
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHhc---CCCCCCccc
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR---SSQCPMCWQ 73 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~---s~~CPlCR~ 73 (386)
-...-+.||+--+.-.+.+|+..+.|||+.-..-+....+. .+.||+|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 33445779987777777789999999999999998887664 467999943
No 111
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.97 E-value=2.2 Score=32.34 Aligned_cols=34 Identities=21% Similarity=0.545 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCCc-eeccCCccccHHHHHH
Q 016591 27 CDDACSICLEDFSESDPS-TLTSCKHEFHLQCILE 60 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv-~ll~CgH~FC~~CI~~ 60 (386)
....|++|-+.|.+++.+ +...|+-.||..|+..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 356799999999766554 4556999999999644
No 112
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=78.84 E-value=1.2 Score=42.57 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=36.5
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
..|.+|.... -...++-.|+-.||..|+..++++...||.|..-|.
T Consensus 182 k~Cn~Ch~Lv--Iqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLV--IQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHh--heeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 3599999887 233556578888999999999999999999955443
No 113
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=1.2 Score=44.28 Aligned_cols=40 Identities=25% Similarity=0.614 Sum_probs=29.4
Q ss_pred CCCccCCCccccccccccCCCCceeccC----CccccHHHHHHHHhc
Q 016591 22 GIQDACDDACSICLEDFSESDPSTLTSC----KHEFHLQCILEWCQR 64 (386)
Q Consensus 22 ~iqd~ed~~C~ICle~f~~~~pv~ll~C----gH~FC~~CI~~Wlq~ 64 (386)
++.....+.|.+|.|-| ++...+ .| .|.||+.|-++.++.
T Consensus 262 ~~A~~apLcCTLC~ERL--EDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 262 GAAPSAPLCCTLCHERL--EDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ccCCCCceeehhhhhhh--ccCcee-ecCCCcccceecccCHHHHHh
Confidence 33445568899999999 444333 45 699999999998864
No 114
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.64 E-value=1.6 Score=48.54 Aligned_cols=41 Identities=27% Similarity=0.680 Sum_probs=29.2
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPM 70 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPl 70 (386)
+.|.||-..+. +-...+..|+|+.|..|..+|+.....||.
T Consensus 1029 ~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 34556543331 223456689999999999999998888884
No 115
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.85 E-value=2.6 Score=42.73 Aligned_cols=50 Identities=26% Similarity=0.585 Sum_probs=37.9
Q ss_pred CCccccccccccCCCC-ceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 28 DDACSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 28 d~~C~ICle~f~~~~p-v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
...|+||.+++...+. ..-.+|++..|+.|+..-......||.||+++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 3679999998733232 2333689999999999988889999999976653
No 116
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.29 E-value=4.2 Score=33.14 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred ccCCCccccccccccCC---CC-ceeccCCccccHHHHHHHH-hcCCCCCCccccCC
Q 016591 25 DACDDACSICLEDFSES---DP-STLTSCKHEFHLQCILEWC-QRSSQCPMCWQPIS 76 (386)
Q Consensus 25 d~ed~~C~ICle~f~~~---~p-v~ll~CgH~FC~~CI~~Wl-q~s~~CPlCR~~i~ 76 (386)
......|.||-+.+... +. +....|.--.|..|..-=. ...+.||.|+..+.
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 33456799999987322 22 2344688889999987433 46788999987664
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.23 E-value=3.4 Score=40.69 Aligned_cols=53 Identities=19% Similarity=0.565 Sum_probs=34.9
Q ss_pred cCCCccccccccccCCCCc-eeccCC-----ccccHHHHHHHHhcC--------CCCCCccccCCCC
Q 016591 26 ACDDACSICLEDFSESDPS-TLTSCK-----HEFHLQCILEWCQRS--------SQCPMCWQPISLK 78 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv-~ll~Cg-----H~FC~~CI~~Wlq~s--------~~CPlCR~~i~~k 78 (386)
+.|..|-||+..=.+.... -+-||. |-.|..|+..|+..+ ..||.|+.++...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 4567799999864222111 223553 668999999999432 3699999876543
No 118
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=70.98 E-value=1.7 Score=47.13 Aligned_cols=41 Identities=27% Similarity=0.776 Sum_probs=26.5
Q ss_pred CCcccccccc-----ccCCCCceeccCCccccHHHHHHHHhcCCCCCCc
Q 016591 28 DDACSICLED-----FSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71 (386)
Q Consensus 28 d~~C~ICle~-----f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlC 71 (386)
-+.|.||... |......+...|++.||..|+.. .+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4557788442 21222345668999999999643 34459999
No 119
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.61 E-value=3 Score=43.73 Aligned_cols=39 Identities=23% Similarity=0.507 Sum_probs=30.7
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHHhc
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR 64 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~ 64 (386)
.+..+..|-||.+.+.. .+..+.|+|.||..|+..++..
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 34456889999998832 4666699999999999998854
No 120
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.74 E-value=1.6 Score=43.83 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=39.4
Q ss_pred CCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 27 CDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
.+..|.||+..+ .-+-+.-.|.|.||..|...|.....-||.|+..+..
T Consensus 104 ~~~~~~~~~g~l--~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKL--TVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeE--EecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 367799999987 3344444699999999999999988899999876653
No 121
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.68 E-value=3.4 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHh
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ 63 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq 63 (386)
-+.|.+||..+ ..+++++=||.||..||++++.
T Consensus 43 FdcCsLtLqPc---~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPC---RDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccc---cCCccCCCCeeeeHHHHHHHHH
Confidence 45689999998 4456668999999999999763
No 122
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=67.37 E-value=2.7 Score=40.90 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=35.1
Q ss_pred CCccccccccccCCCC-ceeccCC-----ccccHHHHHHHHh--cCCCCCCccccCCC
Q 016591 28 DDACSICLEDFSESDP-STLTSCK-----HEFHLQCILEWCQ--RSSQCPMCWQPISL 77 (386)
Q Consensus 28 d~~C~ICle~f~~~~p-v~ll~Cg-----H~FC~~CI~~Wlq--~s~~CPlCR~~i~~ 77 (386)
+..|-||.+....... ....+|. +..|..|+..|+. ....|.+|+..+..
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999997532211 2344653 5679999999997 66789999876653
No 123
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=66.53 E-value=3.8 Score=41.58 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=33.1
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCcc
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR 72 (386)
+..|-.|.+.+......+.-.|++.||.+|-.-.-+.-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 344999988776655667778999999999544334446799995
No 124
>PLN02189 cellulose synthase
Probab=62.78 E-value=6.5 Score=45.44 Aligned_cols=52 Identities=17% Similarity=0.403 Sum_probs=35.5
Q ss_pred ccCCCccccccccccC---CCC-ceeccCCccccHHHHHH-HHhcCCCCCCccccCC
Q 016591 25 DACDDACSICLEDFSE---SDP-STLTSCKHEFHLQCILE-WCQRSSQCPMCWQPIS 76 (386)
Q Consensus 25 d~ed~~C~ICle~f~~---~~p-v~ll~CgH~FC~~CI~~-Wlq~s~~CPlCR~~i~ 76 (386)
.-....|.||-+.+.. +++ +.+-.|+--.|..|.+- .-+.++.||.|+..+.
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3344579999999732 222 33435888899999852 2245788999998875
No 125
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=62.26 E-value=6.2 Score=45.77 Aligned_cols=53 Identities=19% Similarity=0.497 Sum_probs=36.4
Q ss_pred CccCCCccccccccccC---CCC-ceeccCCccccHHHHH-HHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSE---SDP-STLTSCKHEFHLQCIL-EWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~---~~p-v~ll~CgH~FC~~CI~-~Wlq~s~~CPlCR~~i~ 76 (386)
+.-.-..|.||-+++.. +++ +.+-.|+--.|..|.+ +.-+.++.||.|+..+.
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 33344579999998732 222 3444688889999985 33346789999988775
No 126
>PLN02436 cellulose synthase A
Probab=59.56 E-value=8 Score=44.87 Aligned_cols=53 Identities=19% Similarity=0.500 Sum_probs=35.8
Q ss_pred CccCCCcccccccccc---CCCC-ceeccCCccccHHHHHHH-HhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFS---ESDP-STLTSCKHEFHLQCILEW-CQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~---~~~p-v~ll~CgH~FC~~CI~~W-lq~s~~CPlCR~~i~ 76 (386)
+.-....|.||-+.+. ++++ +.+-.|+--.|..|.+-= -+.++.||.|+..+.
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3334457999999873 2232 334458888999998532 235688999998875
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.06 E-value=4.7 Score=41.69 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=30.4
Q ss_pred Ccccccccccc--CC-CCceeccCCccccHHHHHHHHhcCCCCCCc
Q 016591 29 DACSICLEDFS--ES-DPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71 (386)
Q Consensus 29 ~~C~ICle~f~--~~-~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlC 71 (386)
..|++|.-.+. .+ ..++.. |+|.||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 45888876642 11 345664 99999999999998877777655
No 128
>PLN02400 cellulose synthase
Probab=58.03 E-value=7.4 Score=45.19 Aligned_cols=53 Identities=21% Similarity=0.438 Sum_probs=36.2
Q ss_pred CccCCCccccccccccC---CCC-ceeccCCccccHHHHH-HHHhcCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSE---SDP-STLTSCKHEFHLQCIL-EWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~---~~p-v~ll~CgH~FC~~CI~-~Wlq~s~~CPlCR~~i~ 76 (386)
+.-....|.||-+++.. +++ +.+-.|+--.|..|.+ +.-+.++.||.|+..+.
T Consensus 32 ~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 33344579999998732 222 3444688889999984 22345688999988775
No 129
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=56.82 E-value=1.3e+02 Score=33.87 Aligned_cols=53 Identities=26% Similarity=0.539 Sum_probs=33.7
Q ss_pred CccCCCccccccccccCCCC-----cee--ccCCccccHHHHHHHH---h-------cCCCCCCccccCC
Q 016591 24 QDACDDACSICLEDFSESDP-----STL--TSCKHEFHLQCILEWC---Q-------RSSQCPMCWQPIS 76 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~p-----v~l--l~CgH~FC~~CI~~Wl---q-------~s~~CPlCR~~i~ 76 (386)
.|-...+|.||.|.-...+. +++ -.|+..||.-|.+..- + .-+.|-+|+..|.
T Consensus 113 ~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 113 HDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 56677889999988422221 222 2588899999987541 1 1256888866553
No 130
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=54.82 E-value=11 Score=38.40 Aligned_cols=53 Identities=19% Similarity=0.525 Sum_probs=35.0
Q ss_pred cCCCcccccccccc--------------CCCC--ceeccCCccccHHHHHHHHhc---------CCCCCCccccCCCC
Q 016591 26 ACDDACSICLEDFS--------------ESDP--STLTSCKHEFHLQCILEWCQR---------SSQCPMCWQPISLK 78 (386)
Q Consensus 26 ~ed~~C~ICle~f~--------------~~~p--v~ll~CgH~FC~~CI~~Wlq~---------s~~CPlCR~~i~~k 78 (386)
..+.+||||+..-- +.-+ ....||||..-.+-..-|.+- +..||+|-+.+.-+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 34778999987520 1111 134589998888888888752 34699998776543
No 131
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=53.93 E-value=8.9 Score=36.08 Aligned_cols=40 Identities=33% Similarity=0.721 Sum_probs=27.1
Q ss_pred CCcccccccc-----ccCCCCceeccCCccccHHHHHHHHhcCCCCCCcc
Q 016591 28 DDACSICLED-----FSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 28 d~~C~ICle~-----f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR 72 (386)
-+.|-||... |..........|+..||..|+. ...||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 4568888752 2122334566799999999975 26699993
No 132
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.87 E-value=4.6 Score=45.16 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=35.1
Q ss_pred CCCccCCCccccccccccCC----CCceeccCCccccHHHHHHHHhcCCCCCCc
Q 016591 22 GIQDACDDACSICLEDFSES----DPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71 (386)
Q Consensus 22 ~iqd~ed~~C~ICle~f~~~----~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlC 71 (386)
|+.-..+..|..|.+..... ..+.+..|+|.||..|+..-..+.. |-.|
T Consensus 778 Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 778 GVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred CeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 44445567899999986322 3467779999999999986665544 6666
No 133
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.91 E-value=6.7 Score=42.21 Aligned_cols=47 Identities=28% Similarity=0.819 Sum_probs=37.2
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
+..+.|.||++.. ..+..+|. |.-|+..|+..+..||+|...+...+
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 3467799999886 34556777 78899999999999999988776543
No 134
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.33 E-value=11 Score=37.06 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=36.2
Q ss_pred CCCccccccccccCCCC-ceeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 27 CDDACSICLEDFSESDP-STLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 27 ed~~C~ICle~f~~~~p-v~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
..+.|+|--..|..... ..+-.|||+|-...+.+.- ...|++|.+.+...+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 35669887766622211 3555899999998887743 678999998887654
No 135
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.02 E-value=2.4 Score=33.79 Aligned_cols=41 Identities=22% Similarity=0.639 Sum_probs=21.8
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
+..||+|...+ .... +|.+|..|-.. +.....||-|.+++.
T Consensus 1 e~~CP~C~~~L------~~~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL------EWQG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE------EEET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCcc------EEeC-CEEECcccccc-ceecccCCCcccHHH
Confidence 46799998876 2222 67788888664 334567999988774
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.69 E-value=12 Score=41.76 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=33.1
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCC--ccccCC
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPM--CWQPIS 76 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPl--CR~~i~ 76 (386)
.|.+|-..+. +..+-..-|+|.-|..|+..|+.....||. |-....
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCH 828 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCcccc
Confidence 4778866551 222334469999999999999999888887 755443
No 137
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.34 E-value=5 Score=41.74 Aligned_cols=48 Identities=29% Similarity=0.622 Sum_probs=0.0
Q ss_pred CCcccccccccc-----------CCCCceeccCCccccHHHHHHHHh------cCCCCCCccccCCCC
Q 016591 28 DDACSICLEDFS-----------ESDPSTLTSCKHEFHLQCILEWCQ------RSSQCPMCWQPISLK 78 (386)
Q Consensus 28 d~~C~ICle~f~-----------~~~pv~ll~CgH~FC~~CI~~Wlq------~s~~CPlCR~~i~~k 78 (386)
-..||+=|..+. ..+|.+.+.|||++.++ .|-. ....||+|++.-.+.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~V 341 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPYV 341 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCce
Confidence 456887766541 23456778999988765 4542 246899999865543
No 138
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=51.00 E-value=6.4 Score=40.99 Aligned_cols=33 Identities=15% Similarity=0.525 Sum_probs=23.4
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHH
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWC 62 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wl 62 (386)
.+|+||+.++-.... .+..|....|..|+.++-
T Consensus 75 ~ecpicflyyps~~n-~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 75 TECPICFLYYPSAKN-LVRCCSETICGECFAPFG 107 (482)
T ss_pred ccCceeeeecccccc-hhhhhccchhhhheeccc
Confidence 479999998732122 222688999999998764
No 139
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=50.64 E-value=17 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=20.4
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhccC
Q 016591 312 TEVRREVNAGISTVSRMMERLETRD 336 (386)
Q Consensus 312 ~~~~re~~agia~v~rm~e~l~~~~ 336 (386)
+-+||.+.-|-.-.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4679999999999999999999654
No 140
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.71 E-value=4.9 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.731 Sum_probs=17.0
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHH
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWC 62 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wl 62 (386)
|.+|.||+..- ..-.|||. |..|-.++.
T Consensus 65 datC~IC~KTK------FADG~GH~-C~YCq~r~C 92 (169)
T KOG3799|consen 65 DATCGICHKTK------FADGCGHN-CSYCQTRFC 92 (169)
T ss_pred Ccchhhhhhcc------cccccCcc-cchhhhhHH
Confidence 88999999753 22257773 444544443
No 141
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.18 E-value=2.2 Score=42.01 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=21.8
Q ss_pred cCCCccccccccccCCCCceec---cCCccccHHHHHHHHhcCCCCCCcccc
Q 016591 26 ACDDACSICLEDFSESDPSTLT---SCKHEFHLQCILEWCQRSSQCPMCWQP 74 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll---~CgH~FC~~CI~~Wlq~s~~CPlCR~~ 74 (386)
+....||||-..-.-.. +.-. .-.|.+|..|-.+|-.....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 44578999976531000 0000 136778999999998888899999543
No 142
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.01 E-value=16 Score=42.51 Aligned_cols=50 Identities=16% Similarity=0.420 Sum_probs=34.9
Q ss_pred CCCccccccccccC---CCC-ceeccCCccccHHHHHH-HHhcCCCCCCccccCC
Q 016591 27 CDDACSICLEDFSE---SDP-STLTSCKHEFHLQCILE-WCQRSSQCPMCWQPIS 76 (386)
Q Consensus 27 ed~~C~ICle~f~~---~~p-v~ll~CgH~FC~~CI~~-Wlq~s~~CPlCR~~i~ 76 (386)
....|.||-+.+.. +++ +.+-.|+--.|..|.+- .-+.+..||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34569999998732 222 34446888899999842 2245788999998776
No 143
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.65 E-value=9.4 Score=28.63 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=19.7
Q ss_pred cccccccccCC-------CCceeccCCccccHHHHHHHHhcCCCCCCc
Q 016591 31 CSICLEDFSES-------DPSTLTSCKHEFHLQCILEWCQRSSQCPMC 71 (386)
Q Consensus 31 C~ICle~f~~~-------~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlC 71 (386)
|--|+..|... .......|++.||.+|=.-.=+.-..||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCC
Confidence 55566666332 113445799999999943222344579988
No 144
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=45.32 E-value=22 Score=39.26 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=34.5
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHh--c----CCCCCCccccCCCCCCChHHHHHHHH
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ--R----SSQCPMCWQPISLKDPTSQELLEAVE 90 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq--~----s~~CPlCR~~i~~kd~~~~~ll~ave 90 (386)
+.|+|+.--+ .-+.+...|+|.=|++- .|+. . .-.||+|.+.+.+.++.....+..+.
T Consensus 307 L~CPl~~~Rm--~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL 370 (636)
T KOG2169|consen 307 LNCPLSKMRM--SLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNIL 370 (636)
T ss_pred ecCCccccee--ecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHH
Confidence 4577776554 33445555666544443 3331 1 23699999999988887765554333
No 145
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=45.03 E-value=6 Score=44.62 Aligned_cols=47 Identities=17% Similarity=0.546 Sum_probs=33.8
Q ss_pred CCccccccccccCCC-CceeccCCccccHHHHHHHHh------cCCCCCCccccCC
Q 016591 28 DDACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQ------RSSQCPMCWQPIS 76 (386)
Q Consensus 28 d~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq------~s~~CPlCR~~i~ 76 (386)
...|..|...+ .+ ..++..|++.||..|+..|.- .-..|++||....
T Consensus 229 ~~mC~~C~~tl--fn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTL--FNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccc--cceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 45688898765 32 457778999999999999961 1235888876543
No 146
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=45.01 E-value=19 Score=35.15 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=41.3
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcC--CCCC--CccccCCCCCCChHHHHHH
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS--SQCP--MCWQPISLKDPTSQELLEA 88 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s--~~CP--lCR~~i~~kd~~~~~ll~a 88 (386)
.-+..|+|-+..+ .-|+.-..|.|.|-.+-|...++.. ..|| .|-+.+...++.-...++.
T Consensus 187 ~~~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~ 251 (275)
T COG5627 187 LLSNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEK 251 (275)
T ss_pred hhcccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHH
Confidence 4478899966654 3566666899999999999999854 4577 4655555444444444433
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.99 E-value=7.2 Score=40.61 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCccccccccc--------------cCCCCc--eeccCCccccHHHHHHHHhc---------CCCCCCccccCCC
Q 016591 28 DDACSICLEDF--------------SESDPS--TLTSCKHEFHLQCILEWCQR---------SSQCPMCWQPISL 77 (386)
Q Consensus 28 d~~C~ICle~f--------------~~~~pv--~ll~CgH~FC~~CI~~Wlq~---------s~~CPlCR~~i~~ 77 (386)
+.+|+||+..- .+..++ ...||||..-.+...-|.+- +..||+|-..|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 77899999752 111111 23489999888888888742 2579999887764
No 148
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.50 E-value=9.5 Score=38.42 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCccccccccccCCCCcee----ccCCccccHHHHHHHHhcCCCCCCccc
Q 016591 28 DDACSICLEDFSESDPSTL----TSCKHEFHLQCILEWCQRSSQCPMCWQ 73 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~l----l~CgH~FC~~CI~~Wlq~s~~CPlCR~ 73 (386)
...||||-..-.... +.. -.=.+.+|..|-.+|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 448999976531110 000 112466788899999988889999965
No 150
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=39.72 E-value=27 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=22.5
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhccC
Q 016591 312 TEVRREVNAGISTVSRMMERLETRD 336 (386)
Q Consensus 312 ~~~~re~~agia~v~rm~e~l~~~~ 336 (386)
+-+||.+.-|...-+|+||+||...
T Consensus 23 S~lQR~~~IGynrAariid~lE~~G 47 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEG 47 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCc
Confidence 5689999999999999999999654
No 151
>PLN02195 cellulose synthase A
Probab=39.62 E-value=28 Score=40.24 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=34.6
Q ss_pred CccccccccccCC---CC-ceeccCCccccHHHHHHH-HhcCCCCCCccccCCC
Q 016591 29 DACSICLEDFSES---DP-STLTSCKHEFHLQCILEW-CQRSSQCPMCWQPISL 77 (386)
Q Consensus 29 ~~C~ICle~f~~~---~p-v~ll~CgH~FC~~CI~~W-lq~s~~CPlCR~~i~~ 77 (386)
..|.||-+.+... ++ +.+-.|+--.|..|.+-= -+.++.||.|+..+..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 4699999976322 22 344468888999998421 2356889999998883
No 152
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.28 E-value=25 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCccccccccccCCC-----------CceeccCCccccHHHHHHHHhcCCCCCCcc
Q 016591 28 DDACSICLEDFSESD-----------PSTLTSCKHEFHLQCILEWCQRSSQCPMCW 72 (386)
Q Consensus 28 d~~C~ICle~f~~~~-----------pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR 72 (386)
...|--|+..|.... ......|++.||.+|=.-|-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999883210 123567999999999776666667799985
No 153
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=36.29 E-value=47 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCCcee------ccC---CccccHHHHHHHHhc---------CCCCCCcccc
Q 016591 27 CDDACSICLEDFSESDPSTL------TSC---KHEFHLQCILEWCQR---------SSQCPMCWQP 74 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~l------l~C---gH~FC~~CI~~Wlq~---------s~~CPlCR~~ 74 (386)
.-..|..|...-.+ ..... ..| .-.||..||..++.. .-.||.||..
T Consensus 6 ~g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 6 NGKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34457777764211 11111 345 778999999988742 2369999763
No 154
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=35.63 E-value=10 Score=40.67 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=34.6
Q ss_pred cCCCCchhhhhhhhhhhhcCCCccCCCccccccccccCC-CCceeccCCccccHHHH
Q 016591 3 ENKQSDDAHLTSAAAFVEGGIQDACDDACSICLEDFSES-DPSTLTSCKHEFHLQCI 58 (386)
Q Consensus 3 ~~~~~e~~~~~sa~a~~eg~iqd~ed~~C~ICle~f~~~-~pv~ll~CgH~FC~~CI 58 (386)
|.+.+..++.+++.-.+..-+.|+.-..|..|.-.|... ....+..||-.||..|-
T Consensus 876 etqmpssatstsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 876 ETQMPSSATSTSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred cccCCccccccccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 344444444444443444456666677799999887322 12345579999999884
No 155
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=8.5 Score=37.64 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=35.8
Q ss_pred CCCccccccccccCC---CCceecc--------CCccccHHHHHHHHhcC-CCCCCcccc
Q 016591 27 CDDACSICLEDFSES---DPSTLTS--------CKHEFHLQCILEWCQRS-SQCPMCWQP 74 (386)
Q Consensus 27 ed~~C~ICle~f~~~---~pv~ll~--------CgH~FC~~CI~~Wlq~s-~~CPlCR~~ 74 (386)
.+..|.||...+... ..+.++. |+|..|..|+..-+... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346699999988521 2244555 99999999999987543 689999864
No 156
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=31.82 E-value=27 Score=27.66 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=8.9
Q ss_pred cccHHHHHHHHh
Q 016591 52 EFHLQCILEWCQ 63 (386)
Q Consensus 52 ~FC~~CI~~Wlq 63 (386)
.||.-||..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 157
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.51 E-value=16 Score=36.91 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCCce---eccCCccccHHHHHHHHhcCCCCCCccc
Q 016591 27 CDDACSICLEDFSESDPST---LTSCKHEFHLQCILEWCQRSSQCPMCWQ 73 (386)
Q Consensus 27 ed~~C~ICle~f~~~~pv~---ll~CgH~FC~~CI~~Wlq~s~~CPlCR~ 73 (386)
....||||-..-...- +. .-.=.+.+|..|-.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4678999976531110 00 0123466888899999988889999964
No 158
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=31.45 E-value=26 Score=34.79 Aligned_cols=48 Identities=29% Similarity=0.577 Sum_probs=32.5
Q ss_pred CccccccccccCCCCcee----ccCCccccHHHHHHHH-hc--------CCCCCCccccCC
Q 016591 29 DACSICLEDFSESDPSTL----TSCKHEFHLQCILEWC-QR--------SSQCPMCWQPIS 76 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~l----l~CgH~FC~~CI~~Wl-q~--------s~~CPlCR~~i~ 76 (386)
..|-||.+.+...+...+ ..|.-.+|..|+-..+ .. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 579999988843333222 2488889999999844 22 246999988543
No 159
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.22 E-value=19 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=18.2
Q ss_pred CccCCCccccccccccCCC-CceeccCCccccHHHHHH
Q 016591 24 QDACDDACSICLEDFSESD-PSTLTSCKHEFHLQCILE 60 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~ 60 (386)
.+.+...|.+|...|..-. ....-.||+.||..|...
T Consensus 5 ~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3455677999999984322 234446999999888653
No 160
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.54 E-value=41 Score=21.81 Aligned_cols=37 Identities=22% Similarity=0.599 Sum_probs=22.6
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHhcCCCCCCccccC
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPI 75 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i 75 (386)
.|..|.+.+.... ..+..=+..||..| +.|..|...|
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccC--------CCCcccCCcC
Confidence 3778888773321 22223456788777 4677787665
No 161
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.40 E-value=19 Score=25.66 Aligned_cols=43 Identities=23% Similarity=0.518 Sum_probs=27.6
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHHh------cCCCCCCcc
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ------RSSQCPMCW 72 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq------~s~~CPlCR 72 (386)
.|.||......+.-+.--.|...||..|+..-.. ....||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889988443333344557899999999875432 235677774
No 162
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=30.17 E-value=22 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHh--cCCCCCCccc
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ--RSSQCPMCWQ 73 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq--~s~~CPlCR~ 73 (386)
.+.||.|.+.| +.. .+...|...-.. ....||+|..
T Consensus 2 ~f~CP~C~~~~---~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGF---SES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCcc---CHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 57899998865 111 133444444433 2467999965
No 163
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=37 Score=37.77 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=32.5
Q ss_pred ccccccccccCCCCceeccCCc-cccHHHHHHHHh--c----CCCCCCccccCC
Q 016591 30 ACSICLEDFSESDPSTLTSCKH-EFHLQCILEWCQ--R----SSQCPMCWQPIS 76 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH-~FC~~CI~~Wlq--~----s~~CPlCR~~i~ 76 (386)
.|+||-..+ +-...-.|+| ..|..|...... . ...||+|+..+.
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 599998776 3345558999 999999987753 3 456899987543
No 165
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.75 E-value=98 Score=23.83 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=30.3
Q ss_pred CccccccccccCCC-CceeccCCccccHHHHHHHHhcCCCCCCccccCCC
Q 016591 29 DACSICLEDFSESD-PSTLTSCKHEFHLQCILEWCQRSSQCPMCWQPISL 77 (386)
Q Consensus 29 ~~C~ICle~f~~~~-pv~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~ 77 (386)
..|-.|-.++-... ...+-.=...||..|....| ...||.|--.|..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 34777777764332 22321223479999998877 5679999877754
No 166
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=29.12 E-value=34 Score=29.35 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=27.8
Q ss_pred CCCcccccccccc--CCCCceeccCCccccHHHHHHHHhcC--CCCCCccc
Q 016591 27 CDDACSICLEDFS--ESDPSTLTSCKHEFHLQCILEWCQRS--SQCPMCWQ 73 (386)
Q Consensus 27 ed~~C~ICle~f~--~~~pv~ll~CgH~FC~~CI~~Wlq~s--~~CPlCR~ 73 (386)
.+..|.+|...|. .........|+|.+|..|-.. .... -.|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5678999998763 223456668999999998543 1111 24777743
No 167
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=28.90 E-value=36 Score=38.79 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=19.3
Q ss_pred cCCCCchhhhhhhhhhhhcCCCccCCCccccccccc
Q 016591 3 ENKQSDDAHLTSAAAFVEGGIQDACDDACSICLEDF 38 (386)
Q Consensus 3 ~~~~~e~~~~~sa~a~~eg~iqd~ed~~C~ICle~f 38 (386)
..++.+..++.....-.+.... +...|.||+..+
T Consensus 582 ~~tsseS~kl~slv~~~~~~~T--dPNqCiiC~rVl 615 (958)
T KOG1074|consen 582 ISTSSESPKLTSLVENSENKRT--DPNQCIICLRVL 615 (958)
T ss_pred eecccCCccccccccccccccC--Cccceeeeeecc
Confidence 3444555455544433333333 377899999776
No 168
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.31 E-value=19 Score=33.79 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=27.8
Q ss_pred HHhhhhhhh-hhhhhhcccccccchhh---hhc--ccCCccccccHHH
Q 016591 273 SLKSRFNAV-SMRYKESISKSTRGWKE---RFF--SRNNTMADLGTEV 314 (386)
Q Consensus 273 ~~~s~~~~~-s~~yk~si~k~~~g~ke---~~~--~r~~~~~~~~~~~ 314 (386)
.++++.+.- -|||||.|+|+++|+-+ ++| +++...++-..|.
T Consensus 135 G~~r~Vqe~sl~rFkenv~ktrkGl~yvlqk~fg~a~~~~~~~~~~~~ 182 (201)
T KOG3337|consen 135 GVSRAVQEFSLARFKENVTKTRKGLEYVLQKLFGEANSKTLKMTAIEA 182 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccccchHHHHHHHHH
Confidence 445555543 47999999999999975 455 5555555444433
No 169
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.52 E-value=39 Score=32.59 Aligned_cols=25 Identities=20% Similarity=0.528 Sum_probs=16.4
Q ss_pred CccccccccccCCCCceeccCCccc
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEF 53 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~F 53 (386)
+.||||...|..........++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 6799999998543333333456766
No 170
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=26.05 E-value=13 Score=27.38 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=13.3
Q ss_pred eeccCCccccHHHHHHH
Q 016591 45 TLTSCKHEFHLQCILEW 61 (386)
Q Consensus 45 ~ll~CgH~FC~~CI~~W 61 (386)
....|++.||..|..+|
T Consensus 42 ~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 42 TCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ECCCCCCeECCCCCCcC
Confidence 33368999999998777
No 171
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=14 Score=41.06 Aligned_cols=49 Identities=22% Similarity=0.429 Sum_probs=31.9
Q ss_pred CccCCCccccccccccCCCCceeccCCccccHHHHHHHH--hcCCCCCCccccC
Q 016591 24 QDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWC--QRSSQCPMCWQPI 75 (386)
Q Consensus 24 qd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wl--q~s~~CPlCR~~i 75 (386)
.+..++.|.||..... .-..+..|.|.+|..|..... ...+.|+.| ..|
T Consensus 74 ~~~~e~~~~if~~d~~--~y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c-~~~ 124 (669)
T KOG2231|consen 74 FDEHEDTCVIFFADKL--TYTKLEACLHHSCHICDRRFRALYNKKECLHC-TEF 124 (669)
T ss_pred cccccceeeeeecccc--HHHHHHHHHhhhcCccccchhhhcccCCCccc-cch
Confidence 4456777888865531 223445789999999988763 345667777 443
No 172
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=25.43 E-value=42 Score=32.06 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHHHHHHh-cCCCCCCccccCCCCCCChHHHHHHHH
Q 016591 56 QCILEWCQ-RSSQCPMCWQPISLKDPTSQELLEAVE 90 (386)
Q Consensus 56 ~CI~~Wlq-~s~~CPlCR~~i~~kd~~~~~ll~ave 90 (386)
-||..--. ...-||+||.....-|.....+++.+.
T Consensus 98 tCIrkn~~~~gnpCPICRDeyL~~DyRN~~LlEQF~ 133 (239)
T KOG4021|consen 98 TCIRKNGRFLGNPCPICRDEYLYFDYRNPGLLEQFL 133 (239)
T ss_pred HHHhhcCeecCCCCCccccceEEEeccCHHHHHHHh
Confidence 45554322 234699999998887887777777665
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.87 E-value=50 Score=37.31 Aligned_cols=54 Identities=33% Similarity=0.574 Sum_probs=34.1
Q ss_pred hhcCCCccCCCcccccccccc----CCCCc------eeccCCccccHHHHHHHHhcCCCCCCccccCC
Q 016591 19 VEGGIQDACDDACSICLEDFS----ESDPS------TLTSCKHEFHLQCILEWCQRSSQCPMCWQPIS 76 (386)
Q Consensus 19 ~eg~iqd~ed~~C~ICle~f~----~~~pv------~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~ 76 (386)
+.|+-.+..+..|+-|...|- .+.|+ .+..|+|.-|.+=|. ....||+|...+.
T Consensus 1122 ~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1122 VCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred ecCCcCCccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhh
Confidence 345556778889998888762 12222 344688877665543 3467999976554
No 174
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.30 E-value=56 Score=27.76 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=28.4
Q ss_pred CCccccccccccCCCCceeccCCccccHHHHHHHHh
Q 016591 28 DDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQ 63 (386)
Q Consensus 28 d~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq 63 (386)
+..|.||-..+..++..+.++ +-..|++|+.+-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 577999999998888878777 66689999987543
No 175
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.22 E-value=32 Score=35.11 Aligned_cols=46 Identities=26% Similarity=0.604 Sum_probs=29.4
Q ss_pred CCcccccccccc-----------CCCCceeccCCccccHHHHHHHHh------cCCCCCCccccCC
Q 016591 28 DDACSICLEDFS-----------ESDPSTLTSCKHEFHLQCILEWCQ------RSSQCPMCWQPIS 76 (386)
Q Consensus 28 d~~C~ICle~f~-----------~~~pv~ll~CgH~FC~~CI~~Wlq------~s~~CPlCR~~i~ 76 (386)
-..||+=|..+. ..+|.+.+.|||+-.+ ..|-. +...||+|+..-.
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeeecc
Confidence 456888776551 2356678899996443 35653 2467999986543
No 176
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=23 Score=37.14 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=24.5
Q ss_pred CccccccccccCCC---Cceec--cCCccccHHHHHHHHhc
Q 016591 29 DACSICLEDFSESD---PSTLT--SCKHEFHLQCILEWCQR 64 (386)
Q Consensus 29 ~~C~ICle~f~~~~---pv~ll--~CgH~FC~~CI~~Wlq~ 64 (386)
-.||.|...+.... ..... .|+|.||+.|+..|...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34999998873322 11222 49999999998888754
No 177
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=23.03 E-value=32 Score=41.50 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=36.6
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhcC----CCCCCccccC
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQRS----SQCPMCWQPI 75 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~s----~~CPlCR~~i 75 (386)
.....|.||+......+-+.+..|.-.||..|++.-+... -.||-|+..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3466799999887443445555788899999999877532 3699998755
No 178
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.80 E-value=93 Score=32.26 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=34.6
Q ss_pred CCCccCCCccccccccccCCCC--ceeccCCccc--------cHHHHHHHH-----hcCCCCCCccccCCCCCCChHHHH
Q 016591 22 GIQDACDDACSICLEDFSESDP--STLTSCKHEF--------HLQCILEWC-----QRSSQCPMCWQPISLKDPTSQELL 86 (386)
Q Consensus 22 ~iqd~ed~~C~ICle~f~~~~p--v~ll~CgH~F--------C~~CI~~Wl-----q~s~~CPlCR~~i~~kd~~~~~ll 86 (386)
..+++.+..||+|-+......- +++-.|+-.| ++.|+.+-- ...+.||.||..-. +.....+
T Consensus 9 sydedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKC---LtvGMkl 85 (475)
T KOG4218|consen 9 SYDEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKC---LTVGMKL 85 (475)
T ss_pred cCccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHH---hhhhhhH
Confidence 3466677889999876532111 2222344333 223333211 01357999987543 2233344
Q ss_pred HHHHHHhh
Q 016591 87 EAVERERS 94 (386)
Q Consensus 87 ~ave~er~ 94 (386)
+++...|.
T Consensus 86 EAVRADRM 93 (475)
T KOG4218|consen 86 EAVRADRM 93 (475)
T ss_pred HHHHHhhh
Confidence 55544433
No 179
>PLN02248 cellulose synthase-like protein
Probab=22.52 E-value=68 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=28.9
Q ss_pred eeccCCccccHHHHHHHHhcCCCCCCccccCCCCC
Q 016591 45 TLTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 79 (386)
Q Consensus 45 ~ll~CgH~FC~~CI~~Wlq~s~~CPlCR~~i~~kd 79 (386)
.-..|++..|.+|...-+.....||-|+.++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 146 LPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred CcccccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 33368899999999999988889999999886543
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.15 E-value=70 Score=30.97 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=21.4
Q ss_pred ccHHHHHHHHhcCCCCCCccccCCCCCC
Q 016591 53 FHLQCILEWCQRSSQCPMCWQPISLKDP 80 (386)
Q Consensus 53 FC~~CI~~Wlq~s~~CPlCR~~i~~kd~ 80 (386)
-|..|....=..-..||+|+..-..+++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 5778877766677899999987766654
No 181
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=22.02 E-value=62 Score=36.93 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=25.0
Q ss_pred CccccccccccCC------CCceeccCCccccHHHHHHHH
Q 016591 29 DACSICLEDFSES------DPSTLTSCKHEFHLQCILEWC 62 (386)
Q Consensus 29 ~~C~ICle~f~~~------~pv~ll~CgH~FC~~CI~~Wl 62 (386)
..|.+|...|..- ....+-.||..||..|-..+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 5699999998421 233455799999999986554
No 182
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.78 E-value=55 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCccccccHHHHHHh-hhhHHHHHHHHHhhhccC
Q 016591 304 NNTMADLGTEVRREV-NAGISTVSRMMERLETRD 336 (386)
Q Consensus 304 ~~~~~~~~~~~~re~-~agia~v~rm~e~l~~~~ 336 (386)
.-|+.||-..++++. +.+.++|+|.++.|...+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 357888888887764 689999999999998544
No 183
>PF14353 CpXC: CpXC protein
Probab=21.32 E-value=78 Score=27.12 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=23.8
Q ss_pred CccccccccccCCCCceeccCCccccHHHHHHHHhc---CCCCCCccccCCC
Q 016591 29 DACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR---SSQCPMCWQPISL 77 (386)
Q Consensus 29 ~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~---s~~CPlCR~~i~~ 77 (386)
.+||-|...|.... .+.-.-..-..-....+.+ ..+||.|...+..
T Consensus 2 itCP~C~~~~~~~v---~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEV---WTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEE---EeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 57888888772211 1111111223333444433 3579999887754
No 184
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=20.85 E-value=76 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.6
Q ss_pred HHHHhhhhHHHHHHHH
Q 016591 314 VRREVNAGISTVSRMM 329 (386)
Q Consensus 314 ~~re~~agia~v~rm~ 329 (386)
|++|+|+|||...=|=
T Consensus 1 l~~~~~~g~A~a~Ama 16 (78)
T PF03895_consen 1 LDKRANRGIAMAAAMA 16 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH
Confidence 6899999999987664
No 185
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=20.66 E-value=38 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=14.6
Q ss_pred ccccccccccCCCCceeccCCccccHHHHHHHH
Q 016591 30 ACSICLEDFSESDPSTLTSCKHEFHLQCILEWC 62 (386)
Q Consensus 30 ~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wl 62 (386)
.|++|..+|.-.+- .+.+|..|..+|.
T Consensus 5 ~cp~c~sEytYed~------~~~~cpec~~ew~ 31 (112)
T COG2824 5 PCPKCNSEYTYEDG------GQLICPECAHEWN 31 (112)
T ss_pred CCCccCCceEEecC------ceEeCchhccccc
Confidence 48888877633222 2335555555554
No 186
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=20.51 E-value=31 Score=27.45 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=25.5
Q ss_pred CCCccCCCccccccccccCCCCceeccCCccccHHHHHH
Q 016591 22 GIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILE 60 (386)
Q Consensus 22 ~iqd~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~ 60 (386)
.+.......|.+|.........-....|...||..|...
T Consensus 30 ~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 30 EIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 334455778999997742111223346999999999764
No 187
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=20.43 E-value=54 Score=32.44 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=34.1
Q ss_pred cCCCccccccccccCCCCceeccCCccccHHHHHHHHhc--CCCCCCcc
Q 016591 26 ACDDACSICLEDFSESDPSTLTSCKHEFHLQCILEWCQR--SSQCPMCW 72 (386)
Q Consensus 26 ~ed~~C~ICle~f~~~~pv~ll~CgH~FC~~CI~~Wlq~--s~~CPlCR 72 (386)
..+..|||=...+ ..|+.-..|+|+|=.+-|...+.. .-.||+--
T Consensus 174 ~fs~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 174 VFSNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hhcccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 3467899865555 477777789999999999999865 34577643
Done!