Query 016592
Match_columns 386
No_of_seqs 225 out of 1844
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 8.1E-07 2.8E-11 74.2 8.9 101 254-373 4-105 (137)
2 3b5d_A Multidrug transporter E 98.3 3.8E-06 1.3E-10 67.5 10.8 71 176-246 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.2 2.6E-06 8.8E-11 71.1 7.9 70 176-245 34-104 (137)
4 3b5d_A Multidrug transporter E 98.1 3.9E-05 1.3E-09 61.5 12.3 101 253-372 3-104 (110)
5 3l1l_A Arginine/agmatine antip 16.5 1.4E+02 0.0049 28.1 5.0 25 354-378 409-433 (445)
6 2l2t_A Receptor tyrosine-prote 9.7 73 0.0025 20.4 0.3 8 363-370 27-34 (44)
7 2h3o_A MERF; membrane protein, 5.2 2.4E+02 0.0083 19.3 1.2 43 333-375 11-55 (61)
8 3ne5_A Cation efflux system pr 4.2 2.1E+03 0.071 22.9 8.4 29 335-363 913-941 (1054)
9 2l9u_A Receptor tyrosine-prote 3.7 8.2E+02 0.028 14.6 2.6 16 359-374 19-34 (40)
10 2jo1_A Phospholemman; FXYD1, N 3.2 8.8E+02 0.03 17.0 2.8 29 356-384 22-50 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.42 E-value=8.1e-07 Score=74.20 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhchhhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-H
Q 016592 254 FISAMISNISFTYRSIYSKKAMVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVG-N 332 (386)
Q Consensus 254 ~~~~l~s~l~~a~~~vl~k~~~~~g~~l~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l~~~~~~~~l~~~s~~t~sv~-~ 332 (386)
.++.+++.++.+..++..|+.. + +.. .......++..++.++++ ..++++.++.+.... .
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~--g-------~~~------~~~~~l~i~~~~ls~~l~----~~alk~i~~s~ay~iw~ 64 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSE--G-------FTR------LWPSVGTIICYCASFWLL----AQTLAYIPTGIAYAIWS 64 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHH----HHHHC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--c-------cch------HHHHHHHHHHHHHHHHHH----HHHHHhCChhHHHHHHH
Confidence 4667888899999998888752 1 100 001111122222323333 368899999877766 8
Q ss_pred HHHHHHHHHHHHHHhCCccchhhhHhHHHHHHHHHHHHHHh
Q 016592 333 VLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 373 (386)
Q Consensus 333 ~l~~v~~il~s~l~fge~lt~~~~~G~~lii~Gv~ly~~~~ 373 (386)
.+.|++++++++++|||++|+.+++|++++++|+++.+..+
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=3.8e-06 Score=67.46 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHH-HhhhHHHHHHHHHHHhCCcCChhhHHHHHHHHhhhhhcccCC
Q 016592 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (386)
Q Consensus 176 ~~~~~~~~~~~~~~~~al~~vsvs~~~ii-~s~~Pvf~~lls~l~l~ek~s~~~~lsl~l~v~Gv~l~~~~~ 246 (386)
+...+++.+..++...++++.+.+.+..+ ..+.|+++++++++++||+++..+++++.++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455678888999999999999999988 899999999999999999999999999999999999876544
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.24 E-value=2.6e-06 Score=71.13 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHH-HhhhHHHHHHHHHHHhCCcCChhhHHHHHHHHhhhhhcccC
Q 016592 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (386)
Q Consensus 176 ~~~~~~~~~~~~~~~~al~~vsvs~~~ii-~s~~Pvf~~lls~l~l~ek~s~~~~lsl~l~v~Gv~l~~~~ 245 (386)
+...+++.+..++.+.++++++++.+..+ .++.|++++++++++++|+++..++++++++++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455678889999999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.13 E-value=3.9e-05 Score=61.51 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhchhhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-
Q 016592 253 GFISAMISNISFTYRSIYSKKAMVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVG- 331 (386)
Q Consensus 253 G~~~~l~s~l~~a~~~vl~k~~~~~g~~l~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l~~~~~~~~l~~~s~~t~sv~- 331 (386)
+.++.+++.++.+..++..|+.. + +. ........+...++..+++ ..++++.+..+....
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~--~-------~~------~~~~~~~~~~~~~~~~~~~----~~al~~~p~s~ay~i~ 63 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE--G-------FT------RLWPSVGTIICYCASFWLL----AQTLAYIPTGIAYAIW 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--C-------cc------hHHHHHHHHHHHHHHHHHH----HHHHHhCChhhHHHHH
Confidence 35677889999999999999852 1 10 0011111111222222222 357788888877655
Q ss_pred HHHHHHHHHHHHHHHhCCccchhhhHhHHHHHHHHHHHHHH
Q 016592 332 NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 372 (386)
Q Consensus 332 ~~l~~v~~il~s~l~fge~lt~~~~~G~~lii~Gv~ly~~~ 372 (386)
..+.++.+.+.++++|||++|+.+++|+++++.|+.+.+..
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999998754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=16.52 E-value=1.4e+02 Score=28.07 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=18.0
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhHH
Q 016592 354 QTGIGTVIAIAGVAAYSYIKAQMEE 378 (386)
Q Consensus 354 ~~~~G~~lii~Gv~ly~~~~~~~~~ 378 (386)
..+.|.++++.|+.+|.+.+++.++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3556888888999998876655443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=9.70 E-value=73 Score=20.43 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 016592 363 IAGVAAYS 370 (386)
Q Consensus 363 i~Gv~ly~ 370 (386)
..++++|-
T Consensus 27 ~~~~~~~~ 34 (44)
T 2l2t_A 27 GLTFAVYV 34 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33334443
No 7
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=5.23 E-value=2.4e+02 Score=19.32 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhCCccchhh--hHhHHHHHHHHHHHHHHhhh
Q 016592 333 VLKRVFVIGFSILAFGNKISTQT--GIGTVIAIAGVAAYSYIKAQ 375 (386)
Q Consensus 333 ~l~~v~~il~s~l~fge~lt~~~--~~G~~lii~Gv~ly~~~~~~ 375 (386)
...|++++++|..=....+++.. .+=..-.+.|..+|...|++
T Consensus 11 C~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~ 55 (61)
T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKR 55 (61)
T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666666666554443344333 11223334487888766543
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=4.16 E-value=2.1e+03 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCccchhhhHhHHHHH
Q 016592 335 KRVFVIGFSILAFGNKISTQTGIGTVIAI 363 (386)
Q Consensus 335 ~~v~~il~s~l~fge~lt~~~~~G~~lii 363 (386)
-.++..+.+..++|.+++....+|.++.+
T Consensus 913 ~~~~g~~~~l~l~g~~l~~~~~~g~i~l~ 941 (1054)
T 3ne5_A 913 FALVGGIWLLWWMGFHLSVATGTGFIALA 941 (1054)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 33456667777899999999999987754
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=3.67 E-value=8.2e+02 Score=14.61 Aligned_cols=16 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 016592 359 TVIAIAGVAAYSYIKA 374 (386)
Q Consensus 359 ~~lii~Gv~ly~~~~~ 374 (386)
+.+++.|.++|-+.++
T Consensus 19 if~~lg~tflywrgrr 34 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEcccc
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=3.23 E-value=8.8e+02 Score=17.00 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHhhhhHHHHhhcc
Q 016592 356 GIGTVIAIAGVAAYSYIKAQMEEEKRQMK 384 (386)
Q Consensus 356 ~~G~~lii~Gv~ly~~~~~~~~~~~~~~~ 384 (386)
+++.++.++|+++....|-+-+..++.+.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~ 50 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRT 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSS
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCC
Done!