Query 016592
Match_columns 386
No_of_seqs 225 out of 1844
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 16:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016592.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016592hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 5.8 2.1E+02 0.015 14.4 2.4 16 356-371 2-17 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 7.3E+02 0.053 19.6 7.9 53 175-231 5-57 (248)
3 d1iwga8 f.35.1.1 (A:513-566,A: 3.1 9.3E+02 0.067 18.1 10.0 30 338-367 96-125 (222)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 2.8 3.9E+02 0.028 14.4 1.9 10 361-370 16-25 (34)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 2.4 1.4E+03 0.1 18.8 16.9 131 144-276 165-306 (383)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 1.9 1.3E+03 0.093 16.8 11.0 50 321-370 61-110 (199)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 1.7 7.6E+02 0.055 15.7 2.6 20 363-382 53-72 (75)
8 d1cola_ f.1.1.1 (A:) Colicin A 1.7 1.1E+03 0.079 17.9 3.9 13 347-359 161-173 (197)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 1.5 7.2E+02 0.053 12.5 3.8 13 339-351 15-27 (30)
10 d1kqfb2 f.23.22.1 (B:246-290) 1.3 1E+03 0.073 13.5 2.2 25 345-369 6-30 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.80 E-value=2.1e+02 Score=14.43 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=9.4
Q ss_pred hHhHHHHHHHHHHHHH
Q 016592 356 GIGTVIAIAGVAAYSY 371 (386)
Q Consensus 356 ~~G~~lii~Gv~ly~~ 371 (386)
++|.+++-.|..+|.-
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4566666666555543
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=7.3e+02 Score=19.60 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHhhhHHHHHHHHHHHhCCcCChhhHHH
Q 016592 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLS 231 (386)
Q Consensus 175 ~~~~~~~~~~~~~~~~~al~~vsvs~~~ii~s~~Pvf~~lls~l~l~ek~s~~~~ls 231 (386)
+.+++++.++..+.....+..-+..++. ..-+.+.++.++++.+|.-+.+++-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 4455666665555554444444444433 3345566667788888877777753
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=9.3e+02 Score=18.08 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCccchhhhHhHHHHHHHHH
Q 016592 338 FVIGFSILAFGNKISTQTGIGTVIAIAGVA 367 (386)
Q Consensus 338 ~~il~s~l~fge~lt~~~~~G~~lii~Gv~ 367 (386)
...+.+..+.+.+++....+|.++.+....
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 455667778899999999998888554443
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.82 E-value=3.9e+02 Score=14.38 Aligned_cols=10 Identities=40% Similarity=0.673 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 016592 361 IAIAGVAAYS 370 (386)
Q Consensus 361 lii~Gv~ly~ 370 (386)
+.+.|+++|-
T Consensus 16 i~~vG~FfYG 25 (34)
T d2axtj1 16 IVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHH
T ss_pred Hhheeeeeee
Confidence 3456777764
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=1.4e+03 Score=18.81 Aligned_cols=131 Identities=10% Similarity=0.057 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccchH------HHHHHHhhhHHHHHH
Q 016592 144 IHLLVGVVYCLVSWAVGLPKR---APIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVS------FTHTIKALEPFFNAA 214 (386)
Q Consensus 144 ~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~vsvs------~~~ii~s~~Pvf~~l 214 (386)
.|..-+..-+...+..+.++. .+.+.+.........++.-.+...+|.+-...... ..+++.+..-.++.+
T Consensus 165 VH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~ 244 (383)
T d1u7ga_ 165 VHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWI 244 (383)
T ss_dssp THHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHH
Confidence 455555554444444443321 22333333333333333334555555444332111 122333333344444
Q ss_pred HHHHHhCCcCChhhHHHHHHHHhhhhhcccCCccccHH-HHHHHHHHH-HHHHHHHHHHHHhhh
Q 016592 215 ASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWT-GFISAMISN-ISFTYRSIYSKKAMV 276 (386)
Q Consensus 215 ls~l~l~ek~s~~~~lsl~l~v~Gv~l~~~~~~~~~~~-G~~~~l~s~-l~~a~~~vl~k~~~~ 276 (386)
+...+.++|++......- .+.|++-.+....-.++. .++.+.++. +++-.+..+.+|+.+
T Consensus 245 ~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~i 306 (383)
T d1u7ga_ 245 FGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRV 306 (383)
T ss_dssp HHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhccc
Confidence 444455677776655432 234554333332223433 344444433 455455555555543
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=1.89 E-value=1.3e+03 Score=16.77 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=34.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHhCCccchhhhHhHHHHHHHHHHHH
Q 016592 321 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 370 (386)
Q Consensus 321 ~~~s~~t~sv~~~l~~v~~il~s~l~fge~lt~~~~~G~~lii~Gv~ly~ 370 (386)
+..-+.........-.+...+....++|.+++.....+..+.+....-|+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 44444444455555556667777788899999999998888776665443
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.74 E-value=7.6e+02 Score=15.71 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhhHHHHhh
Q 016592 363 IAGVAAYSYIKAQMEEEKRQ 382 (386)
Q Consensus 363 i~Gv~ly~~~~~~~~~~~~~ 382 (386)
+++-++|.+.+++..+.+++
T Consensus 53 i~~Y~iy~W~~~~~~~~~rK 72 (75)
T d1ppjg_ 53 VAFYLVYTWGTQEFEKSKRK 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34555677776655544443
No 8
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.70 E-value=1.1e+03 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=9.0
Q ss_pred hCCccchhhhHhH
Q 016592 347 FGNKISTQTGIGT 359 (386)
Q Consensus 347 fge~lt~~~~~G~ 359 (386)
++-|.++..++|+
T Consensus 161 ~g~~~~~iGI~g~ 173 (197)
T d1cola_ 161 LGVPAIAVGIAGI 173 (197)
T ss_dssp CCSCHHHHHHHHH
T ss_pred ccccccHHHHHHH
Confidence 3566677777777
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.50 E-value=7.2e+02 Score=12.48 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.2
Q ss_pred HHHHHHHHhCCcc
Q 016592 339 VIGFSILAFGNKI 351 (386)
Q Consensus 339 ~il~s~l~fge~l 351 (386)
+..+-.++|.|++
T Consensus 15 ~lfffaiffrepp 27 (30)
T d2axtt1 15 ALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhcCCC
Confidence 3334444556654
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=1.32 E-value=1e+03 Score=13.55 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=16.5
Q ss_pred HHhCCccchhhhHhHHHHHHHHHHH
Q 016592 345 LAFGNKISTQTGIGTVIAIAGVAAY 369 (386)
Q Consensus 345 l~fge~lt~~~~~G~~lii~Gv~ly 369 (386)
-++...+.+...+|+..++++.++.
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777877777666553
Done!