BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016596
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/353 (84%), Positives = 336/353 (95%)
Query: 34 TVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVD 93
TVAEPK ++ +P+LL AVRG++VERPPVWLMRQAGRYMKSYQ++CEKYP FR+RSENVD
Sbjct: 1 TVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVD 60
Query: 94 LVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVRE 153
LVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VRE
Sbjct: 61 LVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVRE 120
Query: 154 FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQ 213
F PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTLASYVVEGGSSK+F+KIKRLAF++
Sbjct: 121 FIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAE 180
Query: 214 PKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTV 273
PKVLHALL+KF TSMAKY++YQAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+V
Sbjct: 181 PKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSV 240
Query: 274 KQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGA 333
K THP+L LILYASGSGGLLERL LTGVDVVSLDWTVDMA+GRRRLGP+VA+QGNVDPG
Sbjct: 241 KLTHPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGV 300
Query: 334 LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
LFGSK+FITNRINDTV+KAG+ KHILNLGHGIKVGTPEEN AHFFE+AK +RY
Sbjct: 301 LFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Shigella Flexineri: New Insights Into Its Catalytic
Mechanism
Length = 354
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 197/334 (58%), Gaps = 3/334 (0%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP +
Sbjct: 10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GP P+ A+VD++ DPE+ + YV A+
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R E+ E ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K S+
Sbjct: 130 TIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYA 286
Y+ Q GAQAV IFD+W L+ D+++FSL Y+ +IVD + + + + + L+
Sbjct: 190 TLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G G LE +A TG D + LDWT D+A+ RRR+G VA+QGN+DP L+ I +
Sbjct: 250 KGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVA 309
Query: 347 DTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 379
+ G + H+ NLGHGI P E+ F E
Sbjct: 310 TILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A+ E + P+WLMRQAGRY+ Y + SF +++ D E++LQP F
Sbjct: 14 FLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFP 73
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D ILFSDILT M + D G+GP P+ T+A+V ++ D ++ YV A+
Sbjct: 74 LDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAV 133
Query: 168 TILRE-----EVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLR 222
+R E ++GF G+P+TLA Y+VEGG S F +K +A+++P ++H +L
Sbjct: 134 REIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILD 193
Query: 223 KFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSL 282
++A Y+ Q + GAQAV IFD+W L+ ++ FSL Y++++V +K+ H +
Sbjct: 194 VNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARV 253
Query: 283 --ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDF 340
I + G G LE LA TGVD V LDWTV++ R R+ VA+QGN+DP LF +
Sbjct: 254 PAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEA 313
Query: 341 ITNRINDTVRKAGRW-KHILNLGHGIKVGTPEENVAHFFE 379
I + G H+ NLGHGI TP E+VA +
Sbjct: 314 IRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVD 353
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
pdb|2EJA|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
Length = 338
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 195/347 (56%), Gaps = 15/347 (4%)
Query: 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVE 97
PKN +LL+++RGE + R PVWLMRQAGRYM Y+ I + +F E +NVDL E
Sbjct: 2 PKN-----DLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATE 56
Query: 98 ISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE 157
ISL P + D +I+FSDIL PL + + + ++G+GP ++ +V ++++DP
Sbjct: 57 ISLLPLKILGVDAIIIFSDILVPLEPLGVKVEFVEGEGP----KLSWSGKVSDLKKYDPS 112
Query: 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVL 217
++ YV + + ++ E +E V+GF GAPFTL SY++EGG+SK F K + PK
Sbjct: 113 QNA-YVYEIIKRVK-EAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEY 170
Query: 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH 277
L+ T ++ Y++ Q GA VQIFDSW LS D+ E+ PY+ ++ +K
Sbjct: 171 KRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKD-F 229
Query: 278 PDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGS 337
D +I + GS ++ D +S+DW+VD+ E + D QGN++P L+ S
Sbjct: 230 SDTPVIYFFRGSSSFIDLAVDYRADALSVDWSVDIPELFKIY--DKGFQGNLEPAVLYAS 287
Query: 338 KDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEVAKA 383
++ I + +R+ + +++ NLGHG+ E V + ++ K+
Sbjct: 288 EEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334
>pdb|3GW0|A Chain A, Urod Mutant G318r
Length = 367
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIRQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase
pdb|1R3Q|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-I
pdb|1R3Y|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-Iii
pdb|3GVQ|A Chain A, Urod Single-Chain Dimer
pdb|3GVR|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
Length = 367
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|3GW3|A Chain A, Human Urod Mutant K297n
Length = 367
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGNTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 89
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 90 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 147
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 148 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 207
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 208 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 267
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I +A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 268 RLREAGLAPVPMITFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 327
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 328 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
pdb|3GVW|A Chain A, Single-Chain Urod F217y (Yf) Mutation
Length = 367
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+++S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLYESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex
With Coproporphyrinogen-Iii
Length = 367
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +++VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTFMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n
Length = 367
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FS+IL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSNILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In
Complex With Coproporphyrinogen-I
Length = 367
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 186/350 (53%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FS+IL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSEILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 89
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 90 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 147
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 148 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 207
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F + +LPY++ + VK
Sbjct: 208 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKLALPYIRDVAKQVKA 267
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 268 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 327
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 328 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-I
pdb|1R3T|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-Iii
Length = 367
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 68
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FS IL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 69 TLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 126
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 127 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 186
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 187 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 246
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 247 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 306
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 307 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 89
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 90 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 147
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF AP+TL +Y+VEGG S ++ KR + +P+
Sbjct: 148 VASELGYVFQAITLTRQRLAGRVPLIGFADAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQ 207
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 208 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 267
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 268 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 327
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 328 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme
In Complex With Coproporphyrinogen-Iii
pdb|2Q6Z|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Apo-
Enzyme
Length = 356
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 185/349 (53%), Gaps = 29/349 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDL---------VVEI 98
L+A GE+ + PVW MRQAGRY+ P FRE D E+
Sbjct: 9 FLRAAWGEETDYTPVWCMRQAGRYL----------PEFRETRAAQDFFSTCRSPEACCEL 58
Query: 99 SLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE- 157
+LQP F D I+FSDIL + + ++ GKGP +P+ + +++++R DPE
Sbjct: 59 TLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLR--DPEV 116
Query: 158 --ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK 215
+ YV +A+T+ R+ + ++GF GAP+TL +Y+VE G S ++ KR + +P+
Sbjct: 117 VASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVERGGSSTMAQAKRWLYQRPQ 176
Query: 216 VLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ 275
H LLR T ++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK
Sbjct: 177 ASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKA 236
Query: 276 THPDLSL-----ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ L I++A LE LA G +VV LDWTV + R +G V +QGN+D
Sbjct: 237 RLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD 296
Query: 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 379
P AL+ S++ I + + G ++I NLGHG+ E+V F +
Sbjct: 297 PCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVD 345
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 175/319 (54%), Gaps = 6/319 (1%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LKA RGE + PVW MRQAGR Y+ + EKY F E + +L ++ P +
Sbjct: 17 FLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLF-EITHQPELCAYVTRLPVEQYG 75
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D IL+ DI+TPL + + +I G GPVI PI + A+++++ + DPE+ VPYV + +
Sbjct: 76 VDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETI 135
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
+L E N ++GF GAPFTLASY+ EGG SK+++K K +S P + L+ K
Sbjct: 136 KLLVNEQLN-VPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADM 194
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287
+ YV+ Q GA+A+QIFDSW L+ D+ + P + +I + + ++ LI++
Sbjct: 195 IIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE--NVPLIMFGV 252
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
G+ L +DVV LDW + + E R + G VQGN+DP L + I + +
Sbjct: 253 GASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKE 311
Query: 348 TVRKAGRWK-HILNLGHGI 365
+ + I NLGHG+
Sbjct: 312 ILDQGMESDGFIFNLGHGV 330
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei
pdb|4AY7|B Chain B, Methyltransferase From Methanosarcina Mazei
Length = 348
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 27/336 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LL A++GE V++ PV + Q G ++ ++ +P E N +L+ +++L +
Sbjct: 19 LLAALKGEPVDKVPVCSVTQTG-IVELMDVVGAPWP---EAHTNPELMAKLALANHELSG 74
Query: 108 PDGVILFSDILTPLSGMNIPFDI-IKGKGP-VIFDPINTDAEVDQV-REFDPEESVPYVG 164
+ V L + + M ++ K + P V P D E V + +P V
Sbjct: 75 LEAVRLPYXLTVLVEAMGCEINMGTKNRQPSVTGHPYPKDLEGAAVPADLLQRGRIPVVL 134
Query: 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKF 224
+A+ I+RE+V + ++G + P T+AS +V S K F K + + +L L
Sbjct: 135 EAIKIIREKVGPDVPIVGGMEGPVTVASDLV---SVKSFMK---WSIKKTDLLEQALDIA 188
Query: 225 TTSMAKYVQYQADNGAQAVQIFDSWATE--LSPVDFEEFSLPYLKQIVDTVKQTHPDLSL 282
T + Y + GA + I D A+ +SP F +F L++ +V
Sbjct: 189 TEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVT----- 243
Query: 283 ILYASGS-GGLLERLALTGVDVVSLDWTVDMA-EGRRRLGPDVAVQGNV-DPGALF-GSK 338
+L+ G+ +L +A G + +S++ + A +G+ +G + GNV P L G
Sbjct: 244 VLHICGNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNVSSPFTLLPGPV 303
Query: 339 DFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENV 374
D I + + +L G GI TP ENV
Sbjct: 304 DKIKAEAKEALEGG---IDVLAPGCGIAPMTPLENV 336
>pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei
pdb|4AY8|B Chain B, Semet-Derivative Of A Methyltransferase From M. Mazei
Length = 348
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 139/336 (41%), Gaps = 27/336 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LL A++GE V++ PV + Q G ++ ++ +P E N +L +++L +
Sbjct: 19 LLAALKGEPVDKVPVCSVTQTG-IVELXDVVGAPWP---EAHTNPELXAKLALANHELSG 74
Query: 108 PDGVIL--FSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQV-REFDPEESVPYVG 164
+ V L +L G I + V P D E V + +P V
Sbjct: 75 LEAVRLPYXLTVLVEAXGCEINXGTKNRQPSVTGHPYPKDLEGAAVPADLLQRGRIPVVL 134
Query: 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKF 224
+A+ I+RE+V + ++G P T+AS +V S K F K + + +L L
Sbjct: 135 EAIKIIREKVGPDVPIVGGXEGPVTVASDLV---SVKSFXK---WSIKKTDLLEQALDIA 188
Query: 225 TTSMAKYVQYQADNGAQAVQIFDSWATE--LSPVDFEEFSLPYLKQIVDTVKQTHPDLSL 282
T + Y + GA + I D A+ SP F +F L++ +V
Sbjct: 189 TEASIIYANAXVEAGADVIAIADPVASPDLXSPDSFRQFLKSRLQKFASSVNSVT----- 243
Query: 283 ILYASGS-GGLLERLALTGVDVVSLDWTVDMA-EGRRRLGPDVAVQGNV-DPGALF-GSK 338
+L+ G+ +L A G + +S++ + A +G+ +G + GNV P L G
Sbjct: 244 VLHICGNVNPILSDXADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNVSSPFTLLPGPV 303
Query: 339 DFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENV 374
D I + + +L G GI TP ENV
Sbjct: 304 DKIKAEAKEALEGG---IDVLAPGCGIAPXTPLENV 336
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 70 RYMKSYQIICEKYPSFRERSENVDLVV 96
R +K+Y + P RER ENVDLV+
Sbjct: 106 RPVKAYATLLNASPLKRERVENVDLVI 132
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 70 RYMKSYQIICEKYPSFRERSENVDLVV 96
R +K+Y + P RER ENVDLV+
Sbjct: 106 RPVKAYATLLNASPLKRERVENVDLVI 132
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 70 RYMKSYQIICEKYPSFRERSENVDLVV 96
R +K+Y + P RER ENVDLV+
Sbjct: 106 RPVKAYATLLNASPLKRERVENVDLVI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,561,147
Number of Sequences: 62578
Number of extensions: 498738
Number of successful extensions: 1469
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 27
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)