Query 016596
Match_columns 386
No_of_seqs 199 out of 1419
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00115 hemE uroporphyrinogen 100.0 3.6E-75 7.7E-80 566.7 40.3 344 41-385 1-345 (346)
2 PLN02433 uroporphyrinogen deca 100.0 5.3E-74 1.2E-78 557.7 38.9 339 48-386 1-339 (345)
3 TIGR01464 hemE uroporphyrinoge 100.0 2.3E-71 5E-76 538.9 37.6 336 47-383 1-338 (338)
4 COG0407 HemE Uroporphyrinogen- 100.0 2.9E-71 6.2E-76 527.7 36.8 342 43-385 5-349 (352)
5 cd00717 URO-D Uroporphyrinogen 100.0 3.5E-70 7.5E-75 530.1 37.6 332 50-383 2-335 (335)
6 PF01208 URO-D: Uroporphyrinog 100.0 1.2E-68 2.5E-73 521.5 31.7 336 43-384 1-343 (343)
7 KOG2872 Uroporphyrinogen decar 100.0 5.9E-69 1.3E-73 481.2 26.3 346 40-386 7-358 (359)
8 TIGR01463 mtaA_cmuA methyltran 100.0 2.9E-66 6.3E-71 503.7 35.5 322 39-386 2-340 (340)
9 PRK06252 methylcobalamin:coenz 100.0 2.2E-66 4.7E-71 504.6 34.3 329 39-386 2-338 (339)
10 cd03307 Mta_CmuA_like MtaA_Cmu 100.0 8E-65 1.7E-69 490.7 33.6 318 49-383 1-326 (326)
11 cd03465 URO-D_like The URO-D _ 100.0 7.1E-62 1.5E-66 471.3 35.2 319 50-383 2-330 (330)
12 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 2.7E-59 5.9E-64 459.1 29.5 326 43-383 4-378 (378)
13 cd00465 URO-D_CIMS_like The UR 100.0 1.3E-46 2.8E-51 360.8 29.2 297 61-383 1-306 (306)
14 cd03309 CmuC_like CmuC_like. P 100.0 3.6E-38 7.9E-43 301.6 27.1 196 178-380 113-318 (321)
15 PRK04326 methionine synthase; 99.9 7.2E-24 1.6E-28 205.3 19.0 260 85-384 40-322 (330)
16 PRK00957 methionine synthase; 99.8 3.8E-19 8.1E-24 170.5 20.7 189 175-384 105-304 (305)
17 cd03311 CIMS_C_terminal_like C 99.7 4.5E-16 9.8E-21 151.0 15.0 192 178-382 119-331 (332)
18 cd03310 CIMS_like CIMS - Cobal 99.5 5.4E-13 1.2E-17 128.8 16.9 200 162-381 100-319 (321)
19 PRK01207 methionine synthase; 99.3 1.2E-10 2.6E-15 111.8 18.8 185 178-384 119-339 (343)
20 PRK08575 5-methyltetrahydropte 99.2 6.9E-10 1.5E-14 107.2 18.3 183 178-384 128-322 (326)
21 PRK09121 5-methyltetrahydropte 99.2 9.7E-10 2.1E-14 106.6 19.1 197 164-384 111-334 (339)
22 PRK06233 hypothetical protein; 99.1 1.7E-09 3.8E-14 106.2 17.0 210 164-384 120-370 (372)
23 PRK06052 5-methyltetrahydropte 99.1 1.6E-08 3.5E-13 95.9 20.8 204 163-384 96-340 (344)
24 PRK06520 5-methyltetrahydropte 99.0 7.5E-09 1.6E-13 101.5 17.0 209 164-383 119-366 (368)
25 PLN02475 5-methyltetrahydropte 99.0 9.9E-09 2.1E-13 108.7 18.5 189 178-384 553-758 (766)
26 PRK05222 5-methyltetrahydropte 99.0 1.2E-08 2.6E-13 108.5 17.5 188 178-384 548-752 (758)
27 cd03312 CIMS_N_terminal_like C 99.0 2.8E-08 6E-13 97.3 18.6 188 162-372 135-333 (360)
28 PF01717 Meth_synt_2: Cobalami 99.0 4.1E-09 8.9E-14 102.0 11.6 190 178-383 121-324 (324)
29 TIGR01371 met_syn_B12ind 5-met 99.0 3.3E-08 7.2E-13 105.1 19.0 188 178-384 542-747 (750)
30 COG0620 MetE Methionine syntha 98.9 5E-08 1.1E-12 93.9 15.2 192 174-384 122-327 (330)
31 TIGR01371 met_syn_B12ind 5-met 98.8 3.3E-07 7.2E-12 97.6 18.8 186 163-372 132-328 (750)
32 PLN02475 5-methyltetrahydropte 98.8 4.1E-07 8.9E-12 96.6 19.0 173 184-372 155-341 (766)
33 PRK05222 5-methyltetrahydropte 98.7 8.7E-07 1.9E-11 94.5 19.6 180 162-365 137-324 (758)
34 KOG2263 Methionine synthase II 97.4 0.00086 1.9E-08 65.9 9.2 188 178-384 553-758 (765)
35 PF08267 Meth_synt_1: Cobalami 97.2 0.0061 1.3E-07 58.3 12.5 165 162-350 135-308 (310)
36 cd07940 DRE_TIM_IPMS 2-isoprop 95.8 0.48 1E-05 44.5 15.8 141 224-383 18-183 (268)
37 TIGR01496 DHPS dihydropteroate 95.7 1.2 2.6E-05 41.7 17.7 148 227-382 24-190 (257)
38 TIGR02660 nifV_homocitr homoci 95.5 0.65 1.4E-05 45.8 15.7 72 224-307 21-92 (365)
39 cd07948 DRE_TIM_HCS Saccharomy 95.3 0.75 1.6E-05 43.1 14.7 143 224-383 20-181 (262)
40 PRK11613 folP dihydropteroate 95.2 2.2 4.8E-05 40.4 17.6 141 228-377 40-201 (282)
41 COG0646 MetH Methionine syntha 95.2 1.6 3.5E-05 41.2 16.2 149 220-382 137-310 (311)
42 cd00739 DHPS DHPS subgroup of 95.1 3 6.5E-05 39.0 18.1 141 226-374 24-185 (257)
43 cd00951 KDGDH 5-dehydro-4-deox 95.0 1.1 2.4E-05 42.6 15.3 71 229-306 24-100 (289)
44 cd07939 DRE_TIM_NifV Streptomy 94.9 1.4 3E-05 41.2 15.5 140 224-383 18-179 (259)
45 PRK11858 aksA trans-homoaconit 94.9 1 2.2E-05 44.5 15.2 70 225-306 25-94 (378)
46 PRK07535 methyltetrahydrofolat 94.8 3.6 7.7E-05 38.5 17.7 140 215-365 14-165 (261)
47 PRK03170 dihydrodipicolinate s 94.6 1.4 3E-05 41.9 15.0 72 228-306 24-102 (292)
48 PRK05692 hydroxymethylglutaryl 94.3 1.4 3E-05 41.9 14.1 147 223-383 23-195 (287)
49 TIGR00674 dapA dihydrodipicoli 94.3 2.8 6E-05 39.7 16.1 94 228-331 82-186 (285)
50 TIGR00674 dapA dihydrodipicoli 94.3 1.5 3.3E-05 41.5 14.3 72 228-306 21-99 (285)
51 TIGR02090 LEU1_arch isopropylm 94.2 1.9 4.2E-05 42.4 15.2 140 224-383 20-181 (363)
52 cd00423 Pterin_binding Pterin 94.1 5 0.00011 37.4 18.1 150 226-383 24-193 (258)
53 PLN02746 hydroxymethylglutaryl 94.0 1.4 3E-05 43.0 13.5 76 224-307 66-141 (347)
54 PRK03620 5-dehydro-4-deoxygluc 93.9 2.6 5.7E-05 40.3 15.2 70 230-306 32-107 (303)
55 COG2089 SpsE Sialic acid synth 93.5 4.8 0.00011 38.5 15.5 145 228-384 32-205 (347)
56 PRK07094 biotin synthase; Prov 93.4 4.8 0.0001 38.7 16.3 65 232-306 79-145 (323)
57 cd00958 DhnA Class I fructose- 93.4 4 8.7E-05 37.3 15.0 136 232-381 82-234 (235)
58 PF03437 BtpA: BtpA family; I 93.3 4.3 9.3E-05 37.8 14.8 150 221-380 24-198 (254)
59 PRK03170 dihydrodipicolinate s 93.2 5.8 0.00013 37.6 16.2 95 227-331 84-189 (292)
60 PRK01222 N-(5'-phosphoribosyl) 93.1 5.9 0.00013 35.8 15.2 140 231-384 15-208 (210)
61 PRK07226 fructose-bisphosphate 93.0 7.3 0.00016 36.5 16.4 138 232-383 99-253 (267)
62 PRK13753 dihydropteroate synth 93.0 8.3 0.00018 36.4 16.4 143 226-377 25-191 (279)
63 cd00952 CHBPH_aldolase Trans-o 92.9 4.8 0.0001 38.6 15.2 71 229-306 32-109 (309)
64 COG5016 Pyruvate/oxaloacetate 92.8 3.3 7.1E-05 40.8 13.6 112 226-352 156-279 (472)
65 cd00408 DHDPS-like Dihydrodipi 92.8 3.1 6.8E-05 39.1 13.7 73 227-306 19-98 (281)
66 TIGR03249 KdgD 5-dehydro-4-deo 92.6 7.1 0.00015 37.2 15.9 69 230-305 30-104 (296)
67 COG0329 DapA Dihydrodipicolina 92.5 5.6 0.00012 38.0 15.0 71 229-306 28-105 (299)
68 PRK00915 2-isopropylmalate syn 92.2 4.2 9.2E-05 42.0 14.7 70 225-306 25-98 (513)
69 cd07938 DRE_TIM_HMGL 3-hydroxy 92.1 3.4 7.4E-05 38.9 12.9 145 225-383 19-189 (274)
70 PRK13397 3-deoxy-7-phosphohept 92.0 6 0.00013 36.7 13.9 141 234-385 37-184 (250)
71 cd00950 DHDPS Dihydrodipicolin 92.0 4.7 0.0001 38.0 13.9 73 227-306 22-101 (284)
72 PRK12595 bifunctional 3-deoxy- 91.8 5.2 0.00011 39.3 14.1 143 230-385 136-287 (360)
73 PRK12330 oxaloacetate decarbox 91.6 1.4 3E-05 45.1 10.1 87 225-320 154-253 (499)
74 TIGR00433 bioB biotin syntheta 91.5 10 0.00022 35.8 15.6 71 229-307 68-140 (296)
75 PRK09389 (R)-citramalate synth 91.5 6.4 0.00014 40.4 14.9 71 225-307 23-93 (488)
76 KOG2263 Methionine synthase II 91.3 3.1 6.7E-05 41.7 11.7 145 217-366 178-332 (765)
77 PF00682 HMGL-like: HMGL-like 91.2 5.9 0.00013 36.2 13.2 140 224-383 12-177 (237)
78 TIGR01949 AroFGH_arch predicte 91.2 12 0.00025 34.9 15.3 139 231-383 95-249 (258)
79 PF07745 Glyco_hydro_53: Glyco 91.1 2.5 5.3E-05 41.0 10.9 134 218-352 102-280 (332)
80 PRK05692 hydroxymethylglutaryl 90.9 1.5 3.3E-05 41.6 9.2 72 226-306 155-230 (287)
81 cd02933 OYE_like_FMN Old yello 90.9 2.1 4.5E-05 41.7 10.3 111 219-329 145-294 (338)
82 cd08205 RuBisCO_IV_RLP Ribulos 90.8 18 0.00038 35.7 18.4 165 158-380 179-367 (367)
83 COG3589 Uncharacterized conser 90.8 7.6 0.00016 37.4 13.4 93 226-325 16-116 (360)
84 PRK04147 N-acetylneuraminate l 90.8 9 0.0002 36.4 14.5 71 229-306 27-105 (293)
85 PRK03620 5-dehydro-4-deoxygluc 90.8 10 0.00023 36.2 14.9 91 230-330 92-191 (303)
86 TIGR00683 nanA N-acetylneurami 90.5 12 0.00026 35.5 15.0 73 227-306 22-102 (290)
87 TIGR03151 enACPred_II putative 90.2 6.2 0.00013 37.9 12.7 100 212-330 45-171 (307)
88 PRK12581 oxaloacetate decarbox 90.2 2.1 4.6E-05 43.4 9.8 73 224-306 161-237 (468)
89 PRK14041 oxaloacetate decarbox 90.1 2 4.4E-05 43.6 9.7 111 226-351 153-275 (467)
90 cd00954 NAL N-Acetylneuraminic 90.1 14 0.0003 35.0 15.0 72 228-306 23-102 (288)
91 PRK09427 bifunctional indole-3 90.1 15 0.00032 37.4 15.7 202 164-384 197-454 (454)
92 PRK12331 oxaloacetate decarbox 90.0 1.9 4.1E-05 43.7 9.4 84 227-320 155-250 (448)
93 COG0434 SgcQ Predicted TIM-bar 90.0 15 0.00033 33.6 14.7 152 221-380 29-203 (263)
94 PRK08227 autoinducer 2 aldolas 89.8 16 0.00035 34.2 14.7 137 232-383 100-248 (264)
95 PRK04452 acetyl-CoA decarbonyl 89.7 9 0.00019 36.9 13.2 152 214-383 63-231 (319)
96 cd07945 DRE_TIM_CMS Leptospira 89.6 3 6.4E-05 39.5 9.9 70 227-305 148-221 (280)
97 TIGR02313 HpaI-NOT-DapA 2,4-di 89.6 18 0.00039 34.4 15.4 70 230-306 25-101 (294)
98 cd07938 DRE_TIM_HMGL 3-hydroxy 89.5 2.4 5.2E-05 40.0 9.2 71 226-305 149-223 (274)
99 PRK06438 hypothetical protein; 89.4 3.5 7.5E-05 39.0 10.0 157 178-378 126-288 (292)
100 cd01306 PhnM PhnM is believed 89.4 20 0.00042 34.8 15.5 141 230-383 99-270 (325)
101 COG2100 Predicted Fe-S oxidore 89.3 5.6 0.00012 38.1 11.1 143 209-385 138-284 (414)
102 PF00682 HMGL-like: HMGL-like 89.2 2.4 5.2E-05 38.8 8.8 69 229-306 140-212 (237)
103 PF00809 Pterin_bind: Pterin b 89.1 17 0.00036 32.8 17.5 145 232-383 25-190 (210)
104 PRK14042 pyruvate carboxylase 89.0 2.6 5.7E-05 44.1 9.8 71 226-306 154-228 (596)
105 cd00950 DHDPS Dihydrodipicolin 88.8 17 0.00036 34.3 14.5 93 229-331 85-188 (284)
106 COG0159 TrpA Tryptophan syntha 88.7 19 0.00041 33.7 14.2 145 226-384 31-203 (265)
107 PLN03228 methylthioalkylmalate 88.7 21 0.00046 36.7 15.9 51 335-385 201-252 (503)
108 PLN02417 dihydrodipicolinate s 88.7 17 0.00037 34.3 14.4 72 228-306 24-102 (280)
109 PRK09250 fructose-bisphosphate 88.7 8.5 0.00018 37.4 12.3 138 232-382 152-337 (348)
110 TIGR03569 NeuB_NnaB N-acetylne 88.6 20 0.00044 34.7 15.0 150 226-385 16-194 (329)
111 COG1830 FbaB DhnA-type fructos 88.5 15 0.00033 34.2 13.3 138 231-382 102-258 (265)
112 PF00701 DHDPS: Dihydrodipicol 88.4 22 0.00048 33.5 15.1 94 228-331 85-189 (289)
113 PF00701 DHDPS: Dihydrodipicol 88.4 3.3 7.1E-05 39.2 9.4 74 226-306 22-102 (289)
114 TIGR00973 leuA_bact 2-isopropy 88.4 17 0.00037 37.4 15.1 32 225-259 22-53 (494)
115 cd04724 Tryptophan_synthase_al 88.4 14 0.00031 34.0 13.4 80 226-306 14-110 (242)
116 COG0329 DapA Dihydrodipicolina 88.3 24 0.00052 33.7 19.5 155 165-382 61-226 (299)
117 cd07943 DRE_TIM_HOA 4-hydroxy- 88.2 3.4 7.5E-05 38.6 9.3 71 226-305 141-215 (263)
118 PLN02746 hydroxymethylglutaryl 88.1 4 8.6E-05 39.9 9.8 71 226-305 197-271 (347)
119 cd04735 OYE_like_4_FMN Old yel 88.0 3 6.5E-05 40.8 9.1 135 221-361 139-320 (353)
120 cd04747 OYE_like_5_FMN Old yel 87.9 5.4 0.00012 39.2 10.8 141 221-361 139-335 (361)
121 cd07945 DRE_TIM_CMS Leptospira 87.8 25 0.00054 33.3 15.2 73 225-307 18-94 (280)
122 TIGR03471 HpnJ hopanoid biosyn 87.8 23 0.00049 36.1 15.7 58 239-307 245-304 (472)
123 PRK09282 pyruvate carboxylase 87.7 2.9 6.2E-05 44.0 9.1 85 226-320 154-250 (592)
124 TIGR00259 thylakoid_BtpA membr 87.6 24 0.00053 32.9 14.7 131 221-360 23-178 (257)
125 TIGR03586 PseI pseudaminic aci 87.4 23 0.00049 34.4 14.5 147 226-384 17-192 (327)
126 cd02803 OYE_like_FMN_family Ol 87.3 5.1 0.00011 38.5 10.2 86 221-306 136-247 (327)
127 cd03174 DRE_TIM_metallolyase D 87.2 15 0.00032 33.9 13.0 148 224-384 17-187 (265)
128 cd07944 DRE_TIM_HOA_like 4-hyd 87.2 5.2 0.00011 37.5 9.8 70 228-306 140-214 (266)
129 cd03174 DRE_TIM_metallolyase D 87.1 4.4 9.4E-05 37.6 9.3 67 230-305 150-220 (265)
130 cd00408 DHDPS-like Dihydrodipi 87.0 27 0.00058 32.7 15.0 94 228-331 81-185 (281)
131 cd07940 DRE_TIM_IPMS 2-isoprop 86.7 4.2 9E-05 38.1 8.9 68 229-305 146-219 (268)
132 TIGR01108 oadA oxaloacetate de 86.7 3.8 8.2E-05 43.0 9.3 85 226-320 149-245 (582)
133 PF02581 TMP-TENI: Thiamine mo 86.6 15 0.00033 32.1 11.9 85 227-325 13-98 (180)
134 cd00951 KDGDH 5-dehydro-4-deox 86.6 29 0.00064 32.8 15.2 91 229-329 84-183 (289)
135 PRK14057 epimerase; Provisiona 86.5 28 0.00061 32.4 14.5 101 231-333 37-167 (254)
136 cd07937 DRE_TIM_PC_TC_5S Pyruv 86.4 29 0.00064 32.6 14.6 144 225-383 20-189 (275)
137 cd02931 ER_like_FMN Enoate red 86.4 5.7 0.00012 39.4 10.1 110 221-330 145-315 (382)
138 COG0352 ThiE Thiamine monophos 86.3 20 0.00044 32.4 12.7 83 229-325 24-107 (211)
139 PRK14040 oxaloacetate decarbox 86.1 4.2 9.1E-05 42.7 9.3 85 225-319 154-250 (593)
140 PRK08508 biotin synthase; Prov 85.7 32 0.00069 32.4 14.8 67 233-307 50-119 (279)
141 TIGR01859 fruc_bis_ald_ fructo 85.3 33 0.00073 32.4 14.3 138 230-380 31-198 (282)
142 cd07941 DRE_TIM_LeuA3 Desulfob 85.2 6 0.00013 37.2 9.2 69 228-305 153-225 (273)
143 PRK14041 oxaloacetate decarbox 85.1 41 0.00089 34.3 15.6 145 224-383 23-193 (467)
144 cd00740 MeTr MeTr subgroup of 85.1 33 0.00071 31.9 19.0 136 221-367 21-171 (252)
145 cd07937 DRE_TIM_PC_TC_5S Pyruv 84.9 6.4 0.00014 37.1 9.2 69 228-306 151-223 (275)
146 PF03102 NeuB: NeuB family; I 84.9 9.4 0.0002 35.3 10.0 142 232-385 2-172 (241)
147 cd07939 DRE_TIM_NifV Streptomy 84.7 6.4 0.00014 36.7 9.1 68 228-305 141-212 (259)
148 cd00945 Aldolase_Class_I Class 84.4 25 0.00055 30.5 12.5 133 228-381 15-169 (201)
149 cd07941 DRE_TIM_LeuA3 Desulfob 84.0 38 0.00082 31.8 14.3 144 224-383 18-191 (273)
150 PRK06256 biotin synthase; Vali 83.9 42 0.00092 32.4 16.6 66 232-306 100-168 (336)
151 PLN02363 phosphoribosylanthran 83.9 37 0.0008 31.7 15.3 46 337-386 209-256 (256)
152 PRK15452 putative protease; Pr 83.7 22 0.00048 36.0 12.9 94 230-328 14-116 (443)
153 PRK07028 bifunctional hexulose 83.7 26 0.00055 35.3 13.5 127 231-384 73-213 (430)
154 PRK08195 4-hyroxy-2-oxovalerat 83.7 7.3 0.00016 37.9 9.3 71 226-305 144-219 (337)
155 PRK04147 N-acetylneuraminate l 83.3 42 0.00091 31.8 14.6 49 229-286 89-137 (293)
156 TIGR03217 4OH_2_O_val_ald 4-hy 83.2 7.8 0.00017 37.6 9.2 71 226-305 143-218 (333)
157 cd00530 PTE Phosphotriesterase 83.2 31 0.00067 32.4 13.3 100 263-365 135-247 (293)
158 PRK13398 3-deoxy-7-phosphohept 83.1 41 0.00089 31.6 13.8 120 227-359 42-167 (266)
159 PRK08185 hypothetical protein; 83.0 40 0.00087 31.9 13.6 139 230-381 28-197 (283)
160 cd00945 Aldolase_Class_I Class 82.9 12 0.00027 32.5 9.8 101 225-330 64-182 (201)
161 PLN02417 dihydrodipicolinate s 82.8 43 0.00093 31.5 14.5 89 229-330 86-182 (280)
162 TIGR01235 pyruv_carbox pyruvat 82.8 7.2 0.00016 44.2 9.8 72 225-306 688-763 (1143)
163 TIGR01361 DAHP_synth_Bsub phos 82.2 30 0.00064 32.4 12.3 120 255-385 67-194 (260)
164 PRK08883 ribulose-phosphate 3- 82.0 25 0.00053 32.0 11.5 128 230-385 72-219 (220)
165 PRK10812 putative DNAse; Provi 81.9 23 0.00049 33.2 11.5 110 261-381 108-231 (265)
166 PRK13523 NADPH dehydrogenase N 81.8 11 0.00024 36.7 9.7 86 221-307 137-247 (337)
167 PF01729 QRPTase_C: Quinolinat 81.6 5.6 0.00012 34.6 6.8 61 232-307 93-155 (169)
168 PRK12999 pyruvate carboxylase; 81.5 8.5 0.00018 43.8 9.8 85 226-320 691-787 (1146)
169 TIGR02660 nifV_homocitr homoci 81.3 10 0.00023 37.3 9.5 83 227-319 143-237 (365)
170 cd04733 OYE_like_2_FMN Old yel 81.2 16 0.00034 35.5 10.6 89 218-306 141-255 (338)
171 PRK05096 guanosine 5'-monophos 80.7 5 0.00011 38.8 6.7 81 252-352 78-172 (346)
172 COG2513 PrpB PEP phosphonomuta 80.7 7.8 0.00017 36.5 7.7 69 225-308 165-235 (289)
173 cd00019 AP2Ec AP endonuclease 80.5 47 0.001 30.9 13.4 67 222-290 81-147 (279)
174 TIGR01108 oadA oxaloacetate de 80.3 76 0.0016 33.4 15.7 145 224-383 19-189 (582)
175 PRK06512 thiamine-phosphate py 80.2 28 0.00061 31.7 11.2 80 230-323 30-111 (221)
176 TIGR03326 rubisco_III ribulose 80.2 41 0.00089 33.7 13.1 169 157-383 192-388 (412)
177 PRK14847 hypothetical protein; 80.1 58 0.0013 31.6 13.8 131 230-384 58-199 (333)
178 PRK00043 thiE thiamine-phospha 79.6 44 0.00095 29.6 14.3 76 229-318 24-100 (212)
179 cd00377 ICL_PEPM Members of th 79.4 9.3 0.0002 35.3 7.9 66 226-308 160-227 (243)
180 TIGR00381 cdhD CO dehydrogenas 79.1 70 0.0015 31.6 14.2 134 214-364 127-278 (389)
181 PRK07315 fructose-bisphosphate 79.1 56 0.0012 31.1 13.3 73 231-309 34-108 (293)
182 PRK02083 imidazole glycerol ph 78.9 46 0.001 30.7 12.6 139 230-380 34-195 (253)
183 PRK11858 aksA trans-homoaconit 78.7 14 0.0003 36.6 9.4 69 227-305 146-218 (378)
184 PRK10605 N-ethylmaleimide redu 78.7 40 0.00086 33.2 12.5 134 221-361 154-328 (362)
185 PRK04180 pyridoxal biosynthesi 78.5 48 0.001 31.4 12.2 61 229-307 86-148 (293)
186 cd07948 DRE_TIM_HCS Saccharomy 78.4 15 0.00032 34.4 9.0 66 230-305 145-214 (262)
187 PRK06852 aldolase; Validated 78.4 65 0.0014 30.9 15.5 136 233-382 122-288 (304)
188 PRK11449 putative deoxyribonuc 78.3 58 0.0013 30.3 15.3 95 262-365 112-210 (258)
189 TIGR01859 fruc_bis_ald_ fructo 78.0 17 0.00037 34.4 9.4 120 210-353 151-277 (282)
190 COG1856 Uncharacterized homolo 77.8 56 0.0012 29.8 12.2 81 230-320 46-130 (275)
191 PRK12738 kbaY tagatose-bisphos 77.8 61 0.0013 30.8 13.0 138 230-380 33-200 (286)
192 TIGR00284 dihydropteroate synt 77.8 90 0.0019 32.2 16.2 144 226-385 165-311 (499)
193 PRK09875 putative hydrolase; P 77.7 66 0.0014 30.6 17.7 95 265-363 140-244 (292)
194 PLN02591 tryptophan synthase 77.7 60 0.0013 30.1 14.8 80 226-306 16-112 (250)
195 TIGR00262 trpA tryptophan synt 77.5 62 0.0013 30.1 14.6 80 226-306 24-121 (256)
196 PRK09282 pyruvate carboxylase 77.4 1E+02 0.0022 32.6 15.7 145 224-383 24-194 (592)
197 PRK08883 ribulose-phosphate 3- 77.4 57 0.0012 29.6 16.5 143 230-380 16-187 (220)
198 COG0826 Collagenase and relate 77.2 11 0.00024 36.8 8.1 86 230-319 17-111 (347)
199 COG0135 TrpF Phosphoribosylant 77.0 56 0.0012 29.5 15.7 141 230-384 13-208 (208)
200 cd01310 TatD_DNAse TatD like p 77.0 42 0.00091 30.4 11.6 93 263-364 107-203 (251)
201 PRK11572 copper homeostasis pr 76.9 30 0.00066 32.0 10.4 91 229-331 76-181 (248)
202 cd04726 KGPDC_HPS 3-Keto-L-gul 76.8 52 0.0011 28.9 12.3 106 231-362 69-188 (202)
203 COG0269 SgbH 3-hexulose-6-phos 76.8 31 0.00067 31.2 10.0 95 223-331 64-175 (217)
204 PRK00164 moaA molybdenum cofac 76.7 52 0.0011 31.6 12.7 61 237-307 63-127 (331)
205 PRK12344 putative alpha-isopro 76.6 17 0.00036 37.7 9.6 82 228-319 160-253 (524)
206 PRK05904 coproporphyrinogen II 76.5 79 0.0017 30.9 15.0 60 239-306 56-119 (353)
207 PRK08745 ribulose-phosphate 3- 76.5 61 0.0013 29.6 16.4 101 230-332 20-144 (223)
208 TIGR02090 LEU1_arch isopropylm 76.4 16 0.00034 36.0 9.0 67 229-305 144-214 (363)
209 PRK13958 N-(5'-phosphoribosyl) 76.4 58 0.0013 29.3 14.8 142 230-384 12-206 (207)
210 PLN03228 methylthioalkylmalate 76.4 16 0.00035 37.6 9.2 88 226-319 239-338 (503)
211 COG1609 PurR Transcriptional r 76.3 52 0.0011 31.8 12.5 121 260-385 71-205 (333)
212 PRK08385 nicotinate-nucleotide 76.1 12 0.00027 35.3 7.8 66 230-308 193-260 (278)
213 TIGR02320 PEP_mutase phosphoen 75.9 22 0.00047 33.8 9.4 71 226-308 169-241 (285)
214 cd00331 IGPS Indole-3-glycerol 75.8 56 0.0012 29.3 11.9 66 229-307 34-101 (217)
215 cd01299 Met_dep_hydrolase_A Me 75.8 77 0.0017 30.3 14.1 84 231-325 125-218 (342)
216 TIGR02313 HpaI-NOT-DapA 2,4-di 75.5 75 0.0016 30.1 15.7 51 229-287 85-135 (294)
217 PLN02389 biotin synthase 75.5 89 0.0019 31.0 15.4 71 229-306 122-194 (379)
218 PLN02321 2-isopropylmalate syn 75.5 78 0.0017 33.6 14.2 33 225-260 107-139 (632)
219 COG1228 HutI Imidazolonepropio 75.4 16 0.00035 36.5 8.9 96 266-368 222-320 (406)
220 cd04734 OYE_like_3_FMN Old yel 75.4 26 0.00056 34.1 10.2 86 221-306 136-248 (343)
221 PRK09490 metH B12-dependent me 75.2 1.4E+02 0.0031 34.4 16.9 155 219-382 377-550 (1229)
222 PRK05628 coproporphyrinogen II 75.0 78 0.0017 31.1 13.6 61 239-307 59-125 (375)
223 TIGR01305 GMP_reduct_1 guanosi 74.9 7.4 0.00016 37.6 6.0 110 252-382 77-206 (343)
224 cd00381 IMPDH IMPDH: The catal 74.8 35 0.00076 33.0 10.8 68 228-306 95-162 (325)
225 COG0036 Rpe Pentose-5-phosphat 74.8 67 0.0014 29.2 14.1 144 230-380 20-189 (220)
226 TIGR00977 LeuA_rel 2-isopropyl 74.8 1E+02 0.0022 32.0 14.7 140 225-383 22-194 (526)
227 PLN02705 beta-amylase 74.5 3.6 7.9E-05 42.5 4.0 59 230-289 272-332 (681)
228 PRK08091 ribulose-phosphate 3- 74.3 71 0.0015 29.3 15.0 143 230-380 29-199 (228)
229 PRK08673 3-deoxy-7-phosphohept 74.2 81 0.0018 30.7 13.0 121 227-360 108-234 (335)
230 PF13714 PEP_mutase: Phosphoen 74.1 20 0.00043 33.1 8.5 64 228-308 157-220 (238)
231 TIGR03234 OH-pyruv-isom hydrox 74.0 36 0.00077 31.2 10.4 93 292-385 19-136 (254)
232 TIGR00010 hydrolase, TatD fami 73.4 60 0.0013 29.4 11.7 93 263-364 107-203 (252)
233 PLN02803 beta-amylase 73.2 4.3 9.3E-05 41.4 4.1 59 230-289 111-171 (548)
234 TIGR03128 RuMP_HxlA 3-hexulose 73.2 47 0.001 29.4 10.6 86 231-330 68-168 (206)
235 cd00952 CHBPH_aldolase Trans-o 73.0 90 0.0019 29.9 14.5 51 229-287 93-143 (309)
236 PRK12344 putative alpha-isopro 72.7 1.2E+02 0.0027 31.4 15.9 72 225-307 26-105 (524)
237 TIGR00343 pyridoxal 5'-phospha 72.5 76 0.0017 30.0 11.8 60 229-306 79-140 (287)
238 cd07947 DRE_TIM_Re_CS Clostrid 72.3 24 0.00051 33.4 8.7 81 224-306 147-234 (279)
239 PRK14024 phosphoribosyl isomer 72.3 80 0.0017 29.0 13.3 78 229-318 149-238 (241)
240 PRK09997 hydroxypyruvate isome 72.2 45 0.00097 30.7 10.6 70 292-361 20-105 (258)
241 PF01791 DeoC: DeoC/LacD famil 72.1 10 0.00022 34.7 6.2 98 229-330 79-203 (236)
242 PRK08255 salicylyl-CoA 5-hydro 72.1 21 0.00046 38.8 9.5 110 221-330 546-697 (765)
243 PRK13111 trpA tryptophan synth 72.0 86 0.0019 29.2 13.1 149 226-384 26-198 (258)
244 PLN02801 beta-amylase 71.9 5 0.00011 40.7 4.2 59 230-289 41-101 (517)
245 TIGR01858 tag_bisphos_ald clas 71.8 92 0.002 29.5 13.8 138 230-380 31-198 (282)
246 cd08206 RuBisCO_large_I_II_III 71.6 64 0.0014 32.4 11.9 171 158-383 181-390 (414)
247 PLN02161 beta-amylase 71.6 4.6 0.0001 41.0 3.9 58 230-288 121-180 (531)
248 PRK03512 thiamine-phosphate py 71.4 74 0.0016 28.7 11.4 77 231-321 24-101 (211)
249 PLN02905 beta-amylase 71.3 5 0.00011 41.7 4.1 59 230-289 290-350 (702)
250 PLN00197 beta-amylase; Provisi 71.2 5 0.00011 41.0 4.1 59 230-289 131-191 (573)
251 PRK08446 coproporphyrinogen II 71.2 1.1E+02 0.0023 29.9 16.0 62 239-307 51-115 (350)
252 cd00954 NAL N-Acetylneuraminic 70.8 95 0.0021 29.3 15.3 94 229-331 86-190 (288)
253 TIGR00423 radical SAM domain p 70.8 1E+02 0.0022 29.5 14.3 62 234-305 47-122 (309)
254 TIGR01769 GGGP geranylgeranylg 70.8 59 0.0013 29.2 10.5 145 212-381 5-175 (205)
255 PRK06806 fructose-bisphosphate 70.5 76 0.0016 30.1 11.7 107 232-347 35-164 (281)
256 PRK07084 fructose-bisphosphate 70.4 59 0.0013 31.4 10.9 143 230-381 39-215 (321)
257 TIGR02666 moaA molybdenum cofa 70.1 97 0.0021 29.8 12.8 61 234-305 54-117 (334)
258 PRK07807 inosine 5-monophospha 70.0 48 0.001 33.9 11.0 108 230-352 169-289 (479)
259 PRK13396 3-deoxy-7-phosphohept 69.9 1.2E+02 0.0025 29.8 13.3 124 228-365 117-246 (352)
260 TIGR00683 nanA N-acetylneurami 69.9 1E+02 0.0022 29.2 14.6 41 229-273 86-126 (290)
261 PRK12331 oxaloacetate decarbox 69.8 1.3E+02 0.0029 30.5 15.7 145 224-383 24-194 (448)
262 PTZ00413 lipoate synthase; Pro 69.4 1.2E+02 0.0027 30.0 15.9 144 230-386 184-363 (398)
263 PRK04208 rbcL ribulose bisopho 69.2 1.1E+02 0.0023 31.4 13.0 37 345-382 380-418 (468)
264 cd00377 ICL_PEPM Members of th 69.2 36 0.00078 31.4 9.1 130 235-380 25-194 (243)
265 cd02810 DHOD_DHPD_FMN Dihydroo 69.2 67 0.0014 30.2 11.2 72 232-307 117-196 (289)
266 PRK15447 putative protease; Pr 69.0 55 0.0012 31.2 10.6 127 231-380 20-152 (301)
267 PRK09722 allulose-6-phosphate 69.0 74 0.0016 29.1 10.9 129 229-383 72-221 (229)
268 PRK09058 coproporphyrinogen II 68.9 1.4E+02 0.003 30.3 14.2 124 239-373 114-262 (449)
269 PRK12581 oxaloacetate decarbox 68.7 1.4E+02 0.0031 30.4 14.2 81 226-319 105-198 (468)
270 PF00834 Ribul_P_3_epim: Ribul 68.7 33 0.00072 30.7 8.5 17 229-245 15-31 (201)
271 PRK12737 gatY tagatose-bisphos 68.6 26 0.00056 33.3 8.1 121 209-353 152-279 (284)
272 PF05913 DUF871: Bacterial pro 68.5 20 0.00044 35.1 7.6 89 225-320 13-109 (357)
273 PRK09389 (R)-citramalate synth 68.5 18 0.0004 37.1 7.6 81 229-319 146-238 (488)
274 cd04730 NPD_like 2-Nitropropan 68.4 78 0.0017 28.6 11.2 83 230-331 71-167 (236)
275 cd04731 HisF The cyclase subun 68.3 82 0.0018 28.8 11.4 79 228-319 151-240 (243)
276 cd02930 DCR_FMN 2,4-dienoyl-Co 68.3 46 0.00099 32.5 10.1 86 221-306 132-243 (353)
277 COG0157 NadC Nicotinate-nucleo 68.2 20 0.00042 33.8 7.0 63 230-308 199-263 (280)
278 cd00003 PNPsynthase Pyridoxine 68.1 33 0.00071 31.4 8.2 88 264-378 110-200 (234)
279 PRK15108 biotin synthase; Prov 67.8 1.2E+02 0.0027 29.4 14.7 71 227-306 80-152 (345)
280 PRK09195 gatY tagatose-bisphos 67.7 1.1E+02 0.0025 28.9 14.0 138 230-381 33-201 (284)
281 COG1105 FruK Fructose-1-phosph 67.6 1.2E+02 0.0026 29.2 12.9 84 240-351 130-213 (310)
282 CHL00200 trpA tryptophan synth 67.6 1.1E+02 0.0024 28.7 13.5 54 231-299 111-166 (263)
283 PRK12738 kbaY tagatose-bisphos 67.6 35 0.00075 32.4 8.7 119 209-353 152-279 (286)
284 PRK13361 molybdenum cofactor b 67.6 1.1E+02 0.0023 29.6 12.4 66 232-308 54-124 (329)
285 cd08207 RLP_NonPhot Ribulose b 67.3 74 0.0016 31.8 11.3 167 157-383 191-385 (406)
286 PRK10425 DNase TatD; Provision 67.2 1E+02 0.0023 28.6 11.8 112 263-383 107-235 (258)
287 TIGR00977 LeuA_rel 2-isopropyl 67.2 22 0.00047 36.9 7.9 68 229-305 157-228 (526)
288 PRK00915 2-isopropylmalate syn 67.1 18 0.00039 37.4 7.2 88 226-319 149-248 (513)
289 PRK06096 molybdenum transport 66.9 23 0.0005 33.6 7.4 66 228-308 198-265 (284)
290 PRK10076 pyruvate formate lyas 66.9 99 0.0021 27.9 11.9 101 264-385 54-158 (213)
291 KOG4013 Predicted Cu2+ homeost 66.8 91 0.002 27.8 10.3 112 232-376 87-199 (255)
292 PRK09195 gatY tagatose-bisphos 66.6 33 0.00073 32.5 8.4 119 209-353 152-279 (284)
293 TIGR00693 thiE thiamine-phosph 66.6 89 0.0019 27.3 15.5 78 229-320 16-94 (196)
294 PLN02274 inosine-5'-monophosph 66.5 19 0.00042 37.1 7.3 97 230-330 186-298 (505)
295 TIGR02319 CPEP_Pphonmut carbox 66.2 40 0.00086 32.2 8.8 66 226-308 165-234 (294)
296 PRK05848 nicotinate-nucleotide 66.1 18 0.0004 34.0 6.5 64 230-308 193-258 (273)
297 TIGR01858 tag_bisphos_ald clas 66.0 33 0.00071 32.5 8.2 119 209-353 150-277 (282)
298 cd04731 HisF The cyclase subun 66.0 1.1E+02 0.0023 28.0 12.1 86 229-325 30-124 (243)
299 PRK02615 thiamine-phosphate py 66.0 1.4E+02 0.003 29.3 13.5 84 228-325 159-243 (347)
300 cd04740 DHOD_1B_like Dihydroor 65.7 51 0.0011 31.2 9.7 38 210-247 135-187 (296)
301 TIGR01334 modD putative molybd 65.5 28 0.00061 32.9 7.6 65 229-308 198-264 (277)
302 PRK08207 coproporphyrinogen II 65.5 1.7E+02 0.0037 30.1 15.4 62 239-308 218-287 (488)
303 TIGR01334 modD putative molybd 65.4 69 0.0015 30.3 10.2 43 265-308 174-216 (277)
304 TIGR02082 metH 5-methyltetrahy 65.4 2.6E+02 0.0056 32.2 17.5 146 221-384 143-315 (1178)
305 TIGR01290 nifB nitrogenase cof 65.2 1.6E+02 0.0035 29.8 14.1 111 270-385 101-216 (442)
306 PRK06559 nicotinate-nucleotide 65.1 22 0.00047 33.8 6.8 61 230-308 208-270 (290)
307 TIGR02668 moaA_archaeal probab 65.0 1.3E+02 0.0027 28.5 12.6 61 236-308 53-118 (302)
308 KOG2335 tRNA-dihydrouridine sy 64.3 70 0.0015 31.2 10.1 121 162-306 87-232 (358)
309 cd06556 ICL_KPHMT Members of t 64.2 68 0.0015 29.6 9.8 82 229-328 92-197 (240)
310 cd02071 MM_CoA_mut_B12_BD meth 64.2 76 0.0016 25.7 9.9 74 233-318 44-119 (122)
311 cd08148 RuBisCO_large Ribulose 64.1 1.3E+02 0.0029 29.6 12.3 165 157-380 175-366 (366)
312 PRK07896 nicotinate-nucleotide 64.0 31 0.00066 32.8 7.6 63 231-308 211-275 (289)
313 PRK09490 metH B12-dependent me 64.0 2.8E+02 0.006 32.1 17.6 150 221-384 159-331 (1229)
314 CHL00200 trpA tryptophan synth 63.6 1.3E+02 0.0028 28.2 15.1 150 226-384 29-200 (263)
315 PF03932 CutC: CutC family; I 63.5 67 0.0015 28.8 9.3 91 225-328 71-176 (201)
316 COG1735 Php Predicted metal-de 62.9 95 0.0021 29.7 10.4 130 221-360 112-255 (316)
317 TIGR03332 salvage_mtnW 2,3-dik 62.7 1.7E+02 0.0037 29.3 13.9 167 158-383 188-382 (407)
318 TIGR00559 pdxJ pyridoxine 5'-p 62.7 48 0.001 30.5 8.2 88 264-378 110-200 (237)
319 COG0119 LeuA Isopropylmalate/h 62.6 83 0.0018 31.5 10.7 24 226-249 24-47 (409)
320 TIGR00735 hisF imidazoleglycer 62.4 1.3E+02 0.0028 27.8 11.7 81 228-320 157-247 (254)
321 TIGR03700 mena_SCO4494 putativ 62.4 1.6E+02 0.0034 28.7 14.7 65 231-305 87-165 (351)
322 COG0191 Fba Fructose/tagatose 62.2 1.4E+02 0.0031 28.2 13.0 139 230-379 33-201 (286)
323 PF01136 Peptidase_U32: Peptid 62.2 51 0.0011 29.8 8.7 85 227-330 3-96 (233)
324 TIGR02495 NrdG2 anaerobic ribo 61.8 75 0.0016 27.6 9.4 100 268-385 81-183 (191)
325 TIGR03249 KdgD 5-dehydro-4-deo 61.7 1.5E+02 0.0032 28.1 12.5 90 230-329 90-188 (296)
326 PRK07428 nicotinate-nucleotide 61.6 36 0.00079 32.3 7.6 64 230-308 207-272 (288)
327 TIGR00676 fadh2 5,10-methylene 61.5 1.4E+02 0.0031 27.9 13.3 137 231-385 20-183 (272)
328 cd08213 RuBisCO_large_III Ribu 61.5 1.7E+02 0.0036 29.4 12.6 171 158-383 180-388 (412)
329 cd07947 DRE_TIM_Re_CS Clostrid 61.3 1.5E+02 0.0032 28.0 15.3 144 224-383 19-197 (279)
330 TIGR02026 BchE magnesium-proto 60.5 2.1E+02 0.0045 29.4 15.6 61 237-306 237-303 (497)
331 TIGR00640 acid_CoA_mut_C methy 60.2 98 0.0021 25.6 9.8 75 231-318 45-122 (132)
332 PRK14830 undecaprenyl pyrophos 60.2 1.5E+02 0.0032 27.6 12.0 108 227-353 54-168 (251)
333 PRK10508 hypothetical protein; 60.2 12 0.00026 36.3 4.3 48 335-383 285-332 (333)
334 cd00947 TBP_aldolase_IIB Tagat 60.2 1.6E+02 0.0034 27.9 13.7 138 230-381 28-195 (276)
335 TIGR02129 hisA_euk phosphoribo 59.7 67 0.0014 29.9 8.8 133 229-381 41-200 (253)
336 PLN02617 imidazole glycerol ph 59.6 91 0.002 32.5 10.7 93 230-331 271-394 (538)
337 PLN02898 HMP-P kinase/thiamin- 59.5 2.1E+02 0.0046 29.3 13.5 81 228-322 309-390 (502)
338 PF01261 AP_endonuc_2: Xylose 59.4 99 0.0022 26.7 9.9 65 224-290 69-136 (213)
339 TIGR00973 leuA_bact 2-isopropy 59.0 28 0.0006 35.8 6.9 87 227-319 147-245 (494)
340 KOG4175 Tryptophan synthase al 59.0 1.3E+02 0.0028 27.0 9.9 41 266-306 5-51 (268)
341 PF01026 TatD_DNase: TatD rela 58.9 47 0.001 30.6 7.9 110 265-383 112-233 (255)
342 PRK07709 fructose-bisphosphate 58.8 53 0.0012 31.1 8.2 119 209-353 153-280 (285)
343 PRK08005 epimerase; Validated 58.7 1.4E+02 0.0031 26.9 15.4 101 230-332 17-140 (210)
344 PRK05458 guanosine 5'-monophos 58.6 1.8E+02 0.0039 28.2 12.9 68 228-306 98-167 (326)
345 cd02809 alpha_hydroxyacid_oxid 58.5 1.1E+02 0.0025 28.9 10.7 65 233-307 136-200 (299)
346 cd07944 DRE_TIM_HOA_like 4-hyd 58.4 1.6E+02 0.0035 27.5 13.0 142 224-383 18-178 (266)
347 PRK06843 inosine 5-monophospha 58.2 54 0.0012 32.7 8.5 70 226-306 152-221 (404)
348 PRK06978 nicotinate-nucleotide 58.1 33 0.00072 32.6 6.7 62 229-308 215-278 (294)
349 PRK12457 2-dehydro-3-deoxyphos 58.1 1.7E+02 0.0037 27.7 11.2 111 236-360 44-164 (281)
350 cd02932 OYE_YqiM_FMN Old yello 57.9 1.8E+02 0.004 28.0 12.3 136 218-362 146-328 (336)
351 TIGR01501 MthylAspMutase methy 57.9 89 0.0019 26.1 8.5 14 366-379 116-129 (134)
352 PRK09249 coproporphyrinogen II 57.7 2.2E+02 0.0047 28.8 15.0 61 239-307 102-168 (453)
353 TIGR01235 pyruv_carbox pyruvat 57.5 1.1E+02 0.0023 35.2 11.5 92 203-307 580-709 (1143)
354 PRK11320 prpB 2-methylisocitra 57.4 61 0.0013 30.9 8.4 66 226-308 166-235 (292)
355 PRK11177 phosphoenolpyruvate-p 57.2 17 0.00036 38.2 4.9 83 264-352 483-572 (575)
356 PRK12858 tagatose 1,6-diphosph 57.2 87 0.0019 30.5 9.6 124 233-360 113-276 (340)
357 PRK05660 HemN family oxidoredu 57.1 2E+02 0.0044 28.3 15.2 62 238-307 57-124 (378)
358 PRK00748 1-(5-phosphoribosyl)- 57.0 1.3E+02 0.0029 27.0 10.5 89 230-331 34-130 (233)
359 cd01302 Cyclic_amidohydrolases 56.9 1.9E+02 0.0041 27.9 12.2 93 235-340 90-188 (337)
360 cd08205 RuBisCO_IV_RLP Ribulos 56.7 2.1E+02 0.0045 28.2 14.7 73 231-307 151-230 (367)
361 COG0107 HisF Imidazoleglycerol 56.7 89 0.0019 28.7 8.7 139 230-381 34-198 (256)
362 PRK09989 hypothetical protein; 56.6 1.3E+02 0.0028 27.6 10.5 93 292-385 20-137 (258)
363 PRK06801 hypothetical protein; 56.6 1.8E+02 0.0039 27.6 12.5 70 231-309 34-106 (286)
364 PF10566 Glyco_hydro_97: Glyco 56.4 61 0.0013 30.6 8.1 84 225-308 31-127 (273)
365 cd01096 Alkanal_monooxygenase 56.4 10 0.00022 36.4 3.1 41 334-374 272-312 (315)
366 TIGR03572 WbuZ glycosyl amidat 56.4 1.1E+02 0.0024 27.7 9.8 68 229-307 156-227 (232)
367 PRK09856 fructoselysine 3-epim 56.3 1.7E+02 0.0036 27.0 12.9 135 223-361 87-248 (275)
368 PRK13585 1-(5-phosphoribosyl)- 56.1 1.6E+02 0.0034 26.7 12.3 81 230-322 36-125 (241)
369 COG2876 AroA 3-deoxy-D-arabino 55.9 78 0.0017 29.6 8.4 117 230-360 63-186 (286)
370 cd04732 HisA HisA. Phosphorib 55.4 1.6E+02 0.0034 26.5 11.4 138 229-380 32-188 (234)
371 COG1038 PycA Pyruvate carboxyl 55.3 45 0.00098 36.1 7.6 86 225-320 693-790 (1149)
372 PRK08610 fructose-bisphosphate 55.2 59 0.0013 30.9 7.9 119 209-353 153-280 (286)
373 PRK13125 trpA tryptophan synth 55.1 1.7E+02 0.0037 26.8 13.6 14 293-306 94-107 (244)
374 PRK13111 trpA tryptophan synth 55.1 1.7E+02 0.0037 27.3 10.9 127 230-383 108-254 (258)
375 PRK09549 mtnW 2,3-diketo-5-met 55.1 1.5E+02 0.0033 29.7 11.0 167 158-383 183-377 (407)
376 TIGR01125 MiaB-like tRNA modif 54.8 2.2E+02 0.0047 28.6 12.4 59 233-300 174-242 (430)
377 PLN02489 homocysteine S-methyl 54.6 2.1E+02 0.0046 27.7 18.1 143 222-383 163-333 (335)
378 PRK09016 quinolinate phosphori 54.2 42 0.00092 32.0 6.7 61 230-308 219-281 (296)
379 PF02126 PTE: Phosphotriestera 53.7 2.1E+02 0.0046 27.4 13.7 82 279-362 155-257 (308)
380 TIGR00538 hemN oxygen-independ 53.6 2.5E+02 0.0055 28.4 16.2 61 239-307 102-168 (455)
381 PRK07315 fructose-bisphosphate 53.6 53 0.0011 31.3 7.3 109 237-353 164-288 (293)
382 TIGR03551 F420_cofH 7,8-dideme 53.3 2.2E+02 0.0048 27.6 15.0 65 231-305 78-156 (343)
383 PRK13209 L-xylulose 5-phosphat 53.2 50 0.0011 30.8 7.2 46 340-385 96-151 (283)
384 PRK13813 orotidine 5'-phosphat 53.2 1.7E+02 0.0036 26.1 14.3 135 224-383 65-214 (215)
385 PRK12857 fructose-1,6-bisphosp 53.1 90 0.002 29.6 8.8 124 209-356 152-283 (284)
386 PLN02274 inosine-5'-monophosph 53.1 73 0.0016 32.9 8.8 66 227-306 248-316 (505)
387 COG0036 Rpe Pentose-5-phosphat 52.9 50 0.0011 30.0 6.6 77 230-321 75-166 (220)
388 cd00947 TBP_aldolase_IIB Tagat 52.9 48 0.001 31.3 6.9 119 209-353 145-273 (276)
389 PRK13209 L-xylulose 5-phosphat 52.8 1.9E+02 0.0042 26.7 19.4 158 224-384 97-276 (283)
390 PRK14040 oxaloacetate decarbox 52.7 3.1E+02 0.0066 29.0 15.3 145 224-383 25-195 (593)
391 PRK08999 hypothetical protein; 52.5 2.1E+02 0.0046 27.1 13.2 78 230-322 148-226 (312)
392 PLN02411 12-oxophytodienoate r 52.4 1.2E+02 0.0026 30.1 10.0 114 218-331 157-324 (391)
393 PRK07998 gatY putative fructos 52.2 2.1E+02 0.0046 27.1 15.1 137 231-380 34-197 (283)
394 cd08210 RLP_RrRLP Ribulose bis 52.2 2.4E+02 0.0053 27.7 16.8 142 234-381 149-364 (364)
395 TIGR03278 methan_mark_10 putat 52.1 71 0.0015 32.0 8.2 56 263-320 88-149 (404)
396 PRK07998 gatY putative fructos 52.1 50 0.0011 31.3 6.9 119 209-353 150-276 (283)
397 PLN02321 2-isopropylmalate syn 52.1 45 0.00097 35.4 7.1 88 226-319 240-339 (632)
398 PRK10415 tRNA-dihydrouridine s 52.0 1.2E+02 0.0025 29.3 9.6 124 161-307 77-224 (321)
399 PRK06543 nicotinate-nucleotide 51.6 49 0.0011 31.3 6.7 61 230-308 204-266 (281)
400 PRK13347 coproporphyrinogen II 51.4 2.8E+02 0.006 28.1 15.3 61 239-307 103-169 (453)
401 cd08209 RLP_DK-MTP-1-P-enolase 51.4 2.3E+02 0.0049 28.3 11.6 167 157-383 172-366 (391)
402 COG3473 Maleate cis-trans isom 51.0 1.3E+02 0.0028 27.3 8.6 125 226-364 54-188 (238)
403 KOG0369 Pyruvate carboxylase [ 50.9 79 0.0017 33.6 8.4 73 225-306 717-793 (1176)
404 PRK05437 isopentenyl pyrophosp 50.8 1.2E+02 0.0026 29.7 9.5 67 238-307 147-217 (352)
405 COG2006 Uncharacterized conser 50.6 30 0.00064 32.5 4.9 51 335-385 10-74 (293)
406 TIGR02109 PQQ_syn_pqqE coenzym 50.5 2.4E+02 0.0053 27.2 14.6 62 235-308 49-115 (358)
407 cd04724 Tryptophan_synthase_al 50.0 2.1E+02 0.0045 26.3 11.9 106 230-362 95-217 (242)
408 PF01116 F_bP_aldolase: Fructo 49.9 97 0.0021 29.4 8.5 139 230-381 32-203 (287)
409 PRK07534 methionine synthase I 49.9 2.5E+02 0.0055 27.3 16.9 138 226-384 131-296 (336)
410 PRK15052 D-tagatose-1,6-bispho 49.8 2.8E+02 0.0061 27.8 13.7 148 226-385 24-251 (421)
411 PRK04302 triosephosphate isome 49.8 2E+02 0.0043 26.0 12.6 63 232-306 78-140 (223)
412 TIGR00677 fadh2_euk methylenet 49.7 1.3E+02 0.0028 28.5 9.3 70 175-247 187-261 (281)
413 COG3867 Arabinogalactan endo-1 49.6 2.4E+02 0.0053 27.0 11.2 104 221-325 151-280 (403)
414 COG0646 MetH Methionine syntha 49.5 2.4E+02 0.0053 26.9 13.6 133 229-368 56-233 (311)
415 cd04722 TIM_phosphate_binding 49.5 1.6E+02 0.0035 24.9 10.7 66 232-308 77-144 (200)
416 PRK07259 dihydroorotate dehydr 49.4 2.3E+02 0.0049 26.8 11.1 66 232-306 110-188 (301)
417 cd02929 TMADH_HD_FMN Trimethyl 49.4 2.1E+02 0.0045 28.2 11.1 135 221-362 145-327 (370)
418 cd01292 metallo-dependent_hydr 49.3 1.9E+02 0.0042 25.7 14.2 129 238-380 114-254 (275)
419 PRK06806 fructose-bisphosphate 49.2 77 0.0017 30.0 7.7 104 238-353 165-276 (281)
420 PRK08185 hypothetical protein; 48.9 62 0.0013 30.7 7.0 119 209-353 146-275 (283)
421 TIGR01037 pyrD_sub1_fam dihydr 48.8 1.8E+02 0.004 27.4 10.4 91 210-307 138-263 (300)
422 TIGR00539 hemN_rel putative ox 48.8 2.7E+02 0.0057 27.2 15.3 60 240-307 52-117 (360)
423 TIGR02317 prpB methylisocitrat 48.7 98 0.0021 29.4 8.3 66 226-308 161-230 (285)
424 PLN03033 2-dehydro-3-deoxyphos 48.6 2E+02 0.0044 27.2 10.0 107 237-352 45-157 (290)
425 TIGR00167 cbbA ketose-bisphosp 48.5 79 0.0017 30.1 7.6 124 209-356 155-287 (288)
426 cd00564 TMP_TenI Thiamine mono 48.4 1.8E+02 0.0038 25.0 12.2 78 228-319 14-92 (196)
427 PRK07259 dihydroorotate dehydr 48.4 1.1E+02 0.0024 29.0 8.8 38 210-247 138-190 (301)
428 PRK11572 copper homeostasis pr 48.3 1.6E+02 0.0035 27.3 9.3 84 213-309 116-200 (248)
429 cd00453 FTBP_aldolase_II Fruct 47.8 2.8E+02 0.006 27.1 16.3 100 279-381 85-232 (340)
430 PTZ00170 D-ribulose-5-phosphat 47.4 2.2E+02 0.0048 25.8 11.8 127 229-383 78-223 (228)
431 PLN02334 ribulose-phosphate 3- 47.3 1.8E+02 0.0038 26.4 9.6 17 230-246 24-40 (229)
432 PRK12290 thiE thiamine-phospha 47.3 3.2E+02 0.0069 27.7 15.0 95 230-344 221-316 (437)
433 COG0796 MurI Glutamate racemas 47.0 2.5E+02 0.0055 26.4 13.2 109 239-364 30-146 (269)
434 COG3142 CutC Uncharacterized p 46.9 2.3E+02 0.005 26.0 12.6 64 227-302 74-143 (241)
435 TIGR02321 Pphn_pyruv_hyd phosp 46.7 1E+02 0.0023 29.3 8.1 68 226-308 166-236 (290)
436 PRK09856 fructoselysine 3-epim 46.4 1.9E+02 0.004 26.7 9.9 88 293-380 19-130 (275)
437 cd01295 AdeC Adenine deaminase 46.4 2.1E+02 0.0045 28.6 10.8 89 265-364 122-212 (422)
438 PRK08610 fructose-bisphosphate 45.9 2.7E+02 0.0059 26.4 13.7 140 230-380 33-201 (286)
439 PRK06106 nicotinate-nucleotide 45.9 62 0.0014 30.6 6.4 60 231-308 206-267 (281)
440 TIGR01302 IMP_dehydrog inosine 45.8 61 0.0013 32.9 6.8 84 293-385 229-327 (450)
441 PRK07807 inosine 5-monophospha 45.6 1.8E+02 0.004 29.7 10.3 67 225-305 225-294 (479)
442 cd02810 DHOD_DHPD_FMN Dihydroo 45.6 1.9E+02 0.0042 27.0 10.0 93 210-307 143-272 (289)
443 TIGR00735 hisF imidazoleglycer 45.6 2.5E+02 0.0054 25.9 13.5 136 230-380 34-197 (254)
444 PRK07379 coproporphyrinogen II 45.6 3.2E+02 0.0069 27.2 13.0 61 239-307 66-132 (400)
445 KOG0258 Alanine aminotransfera 45.4 34 0.00073 33.9 4.6 50 336-385 198-248 (475)
446 PRK15446 phosphonate metabolis 45.2 3E+02 0.0064 27.2 11.5 96 261-364 211-307 (383)
447 cd02940 DHPD_FMN Dihydropyrimi 45.0 75 0.0016 30.2 7.0 41 209-249 148-203 (299)
448 cd04722 TIM_phosphate_binding 45.0 1.3E+02 0.0028 25.5 8.1 76 226-309 12-93 (200)
449 PRK07709 fructose-bisphosphate 44.9 2.8E+02 0.0061 26.3 14.0 139 230-380 33-201 (285)
450 cd01335 Radical_SAM Radical SA 44.7 1.9E+02 0.0041 24.3 14.4 62 234-306 39-104 (204)
451 PRK07896 nicotinate-nucleotide 44.5 58 0.0013 31.0 6.0 11 297-307 216-226 (289)
452 cd01917 ACS_2 Acetyl-CoA synth 44.2 1.9E+02 0.0042 27.3 9.1 76 264-352 141-225 (287)
453 PRK12737 gatY tagatose-bisphos 44.1 2.3E+02 0.0049 26.9 10.0 137 230-380 33-200 (284)
454 COG0826 Collagenase and relate 44.1 1.7E+02 0.0037 28.6 9.4 85 228-331 81-174 (347)
455 PRK07107 inosine 5-monophospha 43.9 2.7E+02 0.0057 28.8 11.1 104 229-345 183-302 (502)
456 TIGR01520 FruBisAldo_II_A fruc 43.9 3.3E+02 0.0071 26.8 14.5 99 279-380 99-245 (357)
457 PF01373 Glyco_hydro_14: Glyco 43.8 7.6 0.00016 38.5 -0.0 59 227-288 17-79 (402)
458 COG1180 PflA Pyruvate-formate 43.6 2.7E+02 0.006 25.9 13.2 119 262-384 97-240 (260)
459 cd00331 IGPS Indole-3-glycerol 43.6 2.4E+02 0.0052 25.1 12.1 106 232-362 87-203 (217)
460 PRK13125 trpA tryptophan synth 43.6 2.6E+02 0.0057 25.6 11.7 114 226-362 88-216 (244)
461 PRK05835 fructose-bisphosphate 43.5 97 0.0021 29.7 7.4 128 209-358 152-307 (307)
462 PRK14828 undecaprenyl pyrophos 43.2 2.8E+02 0.0061 25.9 10.8 110 225-353 57-170 (256)
463 PRK05286 dihydroorotate dehydr 42.8 2E+02 0.0043 28.0 9.7 91 212-306 189-317 (344)
464 cd02072 Glm_B12_BD B12 binding 42.8 1.9E+02 0.0042 23.9 9.3 79 230-321 41-128 (128)
465 cd00953 KDG_aldolase KDG (2-ke 42.6 2.9E+02 0.0063 25.9 13.5 69 228-306 22-97 (279)
466 PF00478 IMPDH: IMP dehydrogen 42.4 1.1E+02 0.0024 29.9 7.7 64 230-307 111-177 (352)
467 COG2185 Sbm Methylmalonyl-CoA 42.3 1.1E+02 0.0025 25.8 6.7 55 294-353 34-91 (143)
468 PTZ00170 D-ribulose-5-phosphat 42.3 1.7E+02 0.0037 26.6 8.6 71 230-307 23-95 (228)
469 TIGR01304 IMP_DH_rel_2 IMP deh 42.2 2.3E+02 0.005 28.0 10.0 80 213-305 117-214 (369)
470 PLN02716 nicotinate-nucleotide 42.0 78 0.0017 30.4 6.4 66 229-308 213-291 (308)
471 COG0159 TrpA Tryptophan syntha 41.9 1.4E+02 0.0031 28.0 8.0 42 266-307 4-51 (265)
472 PRK13803 bifunctional phosphor 41.4 4.6E+02 0.01 27.8 14.6 28 356-383 186-214 (610)
473 PRK09197 fructose-bisphosphate 41.4 3.5E+02 0.0077 26.5 12.9 110 262-381 80-239 (350)
474 PRK14836 undecaprenyl pyrophos 41.3 3E+02 0.0065 25.6 10.1 108 226-353 45-160 (253)
475 cd02808 GltS_FMN Glutamate syn 41.2 73 0.0016 31.7 6.5 57 252-308 186-246 (392)
476 TIGR00262 trpA tryptophan synt 41.1 3E+02 0.0065 25.6 12.1 107 230-362 106-229 (256)
477 COG2185 Sbm Methylmalonyl-CoA 41.0 2.2E+02 0.0048 24.0 8.8 75 230-317 54-131 (143)
478 TIGR00676 fadh2 5,10-methylene 40.8 1.6E+02 0.0034 27.6 8.4 69 175-246 183-256 (272)
479 PRK12330 oxaloacetate decarbox 40.7 4.3E+02 0.0093 27.3 15.7 145 224-383 25-195 (499)
480 TIGR01303 IMP_DH_rel_1 IMP deh 40.4 1.6E+02 0.0034 30.2 8.8 68 225-306 223-293 (475)
481 PRK09432 metF 5,10-methylenete 40.1 1.7E+02 0.0036 27.9 8.5 70 175-247 202-276 (296)
482 cd04727 pdxS PdxS is a subunit 39.9 3.3E+02 0.0072 25.8 13.7 59 229-306 77-138 (283)
483 PRK00278 trpC indole-3-glycero 39.5 3.2E+02 0.0069 25.4 13.3 106 232-362 126-242 (260)
484 PRK08898 coproporphyrinogen II 38.6 4E+02 0.0087 26.3 14.0 61 239-307 73-139 (394)
485 PRK00208 thiG thiazole synthas 38.6 2.5E+02 0.0054 26.1 8.9 90 281-382 124-225 (250)
486 PRK05848 nicotinate-nucleotide 38.5 1.5E+02 0.0033 27.9 7.8 54 264-319 166-220 (273)
487 PRK00043 thiE thiamine-phospha 38.4 2.7E+02 0.0059 24.3 12.8 123 230-383 72-210 (212)
488 cd03340 TCP1_eta TCP-1 (CTT or 37.5 2.4E+02 0.0051 29.2 9.8 30 335-364 371-408 (522)
489 PRK13307 bifunctional formalde 37.5 4.3E+02 0.0093 26.3 13.7 122 232-381 243-378 (391)
490 PRK13587 1-(5-phosphoribosyl)- 37.5 3.2E+02 0.007 24.9 13.5 135 231-380 36-190 (234)
491 TIGR01521 FruBisAldo_II_B fruc 37.4 3E+02 0.0065 27.0 9.7 72 230-309 31-105 (347)
492 cd00452 KDPG_aldolase KDPG and 37.4 2.8E+02 0.0061 24.2 12.5 78 227-321 17-98 (190)
493 COG3142 CutC Uncharacterized p 37.3 1.8E+02 0.004 26.6 7.6 119 214-350 117-240 (241)
494 PRK13399 fructose-1,6-bisphosp 37.2 2.2E+02 0.0048 27.8 8.8 71 231-309 34-107 (347)
495 PRK08445 hypothetical protein; 36.9 4.1E+02 0.0088 25.9 12.3 66 229-304 79-158 (348)
496 PLN02540 methylenetetrahydrofo 36.8 2.3E+02 0.0049 29.8 9.3 77 167-247 188-269 (565)
497 PTZ00314 inosine-5'-monophosph 36.8 2.2E+02 0.0048 29.3 9.3 78 293-385 246-344 (495)
498 PRK06096 molybdenum transport 36.7 2.4E+02 0.0052 26.8 8.8 16 293-308 202-217 (284)
499 PF10126 Nit_Regul_Hom: Unchar 36.6 93 0.002 24.8 5.0 46 229-276 17-63 (110)
500 COG0042 tRNA-dihydrouridine sy 36.6 4E+02 0.0086 25.7 12.8 122 163-307 81-228 (323)
No 1
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=100.00 E-value=3.6e-75 Score=566.67 Aligned_cols=344 Identities=47% Similarity=0.812 Sum_probs=326.6
Q ss_pred CCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccc
Q 016596 41 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTP 120 (386)
Q Consensus 41 ~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~ 120 (386)
|++|+||++++++|+++||||||+|.|+|+|+|+|.+++.++.||.|++.||+++++++++++++||+|++++++|+.++
T Consensus 1 ~~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~ 80 (346)
T PRK00115 1 TELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTP 80 (346)
T ss_pred CCcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhh
Confidence 57899999999999999999999999999999999999988856999999999999999999999999999999999999
Q ss_pred cccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCc
Q 016596 121 LSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSS 200 (386)
Q Consensus 121 ~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~ 200 (386)
+++||+++.|+++.+|++.+++++++|+++|++++++++++.++++++++++++++++|++++++||||+|++|++|+++
T Consensus 81 ~ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~ 160 (346)
T PRK00115 81 PDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGS 160 (346)
T ss_pred HHHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCCCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCC
Confidence 99999999999887898888999999999998888778999999999999999999999999999999999999986667
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC
Q 016596 201 KHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL 280 (386)
Q Consensus 201 ~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~ 280 (386)
+++++++++++++||.+|++|+.+++.+++|+++++++|||+|+++|+++++|||++|+||++||+|++++.+++.+++
T Consensus 161 ~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~- 239 (346)
T PRK00115 161 KDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPD- 239 (346)
T ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999997433
Q ss_pred cEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEE
Q 016596 281 SLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHIL 359 (386)
Q Consensus 281 ~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Il 359 (386)
..++|+||++. .++.+.++|++++++|+.+|++++++.+|++++|+||+||..|.||+|+|+++|+++|+.++++||||
T Consensus 240 ~~ilh~cg~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl 319 (346)
T PRK00115 240 VPVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIF 319 (346)
T ss_pred CCEEEEcCCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeee
Confidence 45889999887 68999999999999999999999999999999999999997668999999999999999987789999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++||++|++||+|||+||++++|+|+
T Consensus 320 ~~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 320 NLGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred ecCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997
No 2
>PLN02433 uroporphyrinogen decarboxylase
Probab=100.00 E-value=5.3e-74 Score=557.67 Aligned_cols=339 Identities=71% Similarity=1.195 Sum_probs=321.3
Q ss_pred HHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCce
Q 016596 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIP 127 (386)
Q Consensus 48 v~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~ 127 (386)
++++++|+++||+|||+|+|+|+|.++|+.+++...+|+|++.|||++++++++++++|++|++++++|+.+++|+||++
T Consensus 1 ~~~~~~g~~~dr~Pv~~~~q~g~~~~ey~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~di~~~~ea~G~~ 80 (345)
T PLN02433 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVILFSDILTPLPAMGIP 80 (345)
T ss_pred ChHHHCCCCCCCCCeeeeecchhccHHHHHHHHhcCCHHHHhCCHHHHHHHHHHHHHHhCCCeEEecCCCCcCHHHcCCe
Confidence 46899999999999999999999999999886655469999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHH
Q 016596 128 FDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIK 207 (386)
Q Consensus 128 ~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~ 207 (386)
+.|+++.+|++.+||++++||++|.+++++++++.++++++++++++++++|++++++||||+|+++++|++++++++++
T Consensus 81 i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~l~~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~ 160 (345)
T PLN02433 81 FDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIK 160 (345)
T ss_pred EEECCCCCCccCCCCCCHHHHHhccCCCchhhhHHHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHH
Confidence 99998777877889999999999988777889999999999999999999999999999999999999887788899999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 208 RLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 208 ~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++++++||.+|++|+++++.+++|+++++++|+++++++|++++++||++|+||++||+|++++.+++.+++.++++|+|
T Consensus 161 ~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c 240 (345)
T PLN02433 161 KMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240 (345)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998644568999999
Q ss_pred CCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Q 016596 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKV 367 (386)
Q Consensus 288 G~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~ 367 (386)
|+..+++.+.++|++++++|+.+|+.++++.+|++++|+||+||.+|.||+|+|+++|+++|+.++++||||++||++|+
T Consensus 241 G~~~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~ 320 (345)
T PLN02433 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLV 320 (345)
T ss_pred CCHHHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Confidence 99867899999999999999999999999999999999999999766999999999999999998766799999999999
Q ss_pred CCcHHHHHHHHHHHHhhcC
Q 016596 368 GTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~yg~ 386 (386)
+||+||++||++++|+||+
T Consensus 321 ~tp~eNi~a~v~av~~~~~ 339 (345)
T PLN02433 321 GTPEENVAHFFDVARELRY 339 (345)
T ss_pred CCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999985
No 3
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=100.00 E-value=2.3e-71 Score=538.86 Aligned_cols=336 Identities=51% Similarity=0.901 Sum_probs=317.4
Q ss_pred HHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCc
Q 016596 47 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNI 126 (386)
Q Consensus 47 Rv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~ 126 (386)
|++++++|+++||+|+|+|.++|+++++|++++.+..||.|++.||+++++++++++++|++|++++++|+.+++|+||+
T Consensus 1 ~~~~~~~g~~~dr~Pv~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~d~~~~~ea~G~ 80 (338)
T TIGR01464 1 LFLRAAKGEEVDRPPVWLMRQAGRYLPEYRELRAKAPDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPLQALGL 80 (338)
T ss_pred ChhHHhCCCCCCCCCeeeehhcccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccccccHHHcCC
Confidence 57899999999999999999999999999999988756999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHH
Q 016596 127 PFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206 (386)
Q Consensus 127 ~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~ 206 (386)
++.|+++.+|.+.+++++.+||++|++++++++++.++++++++++++++++|++++++||||+|++|++|+..++++++
T Consensus 81 ~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~ 160 (338)
T TIGR01464 81 DVDFVEGKGPVIPEPIRTPEDVERLKEFDPESELPYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKA 160 (338)
T ss_pred eeEecCCCCCccCCCCCCHHHHHhcCCCChhhchHHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHH
Confidence 99999887797788999999999999887778999999999999999999999999999999999999987677788899
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 207 ~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
+++++++||.+|++|+++++.+++|+++++++|+|+++++|+++++|||++|+||++||++++++.+++..++ ..++|.
T Consensus 161 ~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~-~~ilh~ 239 (338)
T TIGR01464 161 KRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN-VPVILF 239 (338)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986323 357999
Q ss_pred cCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEEecCCC
Q 016596 287 SGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHILNLGHG 364 (386)
Q Consensus 287 cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~ 364 (386)
||++. .++.+.++|++++++++.+|+.++++.+|++++|+|||||..|+||+|+|+++|+++|+.++ ++||||++||+
T Consensus 240 cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~ 319 (338)
T TIGR01464 240 AKGAGHLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHG 319 (338)
T ss_pred eCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCc
Confidence 99887 68999999999999999999999999999999999999997678999999999999999986 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
+|++||+|||+||++++|+
T Consensus 320 i~~~tp~eni~a~v~a~~~ 338 (338)
T TIGR01464 320 ILPDTPPENVKALVEYVHS 338 (338)
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999984
No 4
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-71 Score=527.66 Aligned_cols=342 Identities=42% Similarity=0.761 Sum_probs=326.1
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccc
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e 122 (386)
++++|+++|++||++||+|||+++|||||+++|+.+++...+|.|+|.|||+++|+++++.++|++|++++++|+.+.++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred chHHHHHHHHcCCCCCCCCeEeeecccccccHHHHHHHhcCCHHHHhcCHHHHHHHHhhhHHHhCCCeeeeehhhcccHH
Confidence 77999999999999999999999999999999999998876799999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCCccCCCCCChHHHhccCC-CCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCch
Q 016596 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVRE-FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSK 201 (386)
Q Consensus 123 ~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~-~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~ 201 (386)
+||++++|.++.+|.+..|+.+.++.+.+.+ +++.++++.++++++++++++++++|++|+++||||+|+++++||+++
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HcCCeeecCCCCCCccCCCCCchhhhhhccCCcCcccchHHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcc
Confidence 9999999999999998889999999777764 677789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc
Q 016596 202 HFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS 281 (386)
Q Consensus 202 ~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~ 281 (386)
+|.+++.+|+++||.+|++|+++++.++.|+++|+++|||.|+++|+|++-+++..|++|+.||.+++++.+++.+++ +
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~ 243 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-V 243 (352)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987544 4
Q ss_pred EEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEE
Q 016596 282 LILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHIL 359 (386)
Q Consensus 282 ~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Il 359 (386)
.++|.|++.. +++.+.++|+|++++|+.++++++++.++++++++||+||..|++++|+|+++++++|+.+. +.||||
T Consensus 244 pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If 323 (352)
T COG0407 244 PVIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF 323 (352)
T ss_pred cEEEECCCcHHHHHHHHhcCCcEEeeccccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCcee
Confidence 5899999987 68999999999999999999999999999999999999997779999999999999999998 569999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++||+|+|+||+||+++|++++++|+
T Consensus 324 nlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 324 NLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997
No 5
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00 E-value=3.5e-70 Score=530.14 Aligned_cols=332 Identities=49% Similarity=0.871 Sum_probs=312.4
Q ss_pred HHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceEE
Q 016596 50 KAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFD 129 (386)
Q Consensus 50 aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~~ 129 (386)
++++|+++||||+|+|.++|+|+|+|.+++.++ ||.|++.|||++++++++++++|++|++++++|+.+++|+||+++.
T Consensus 2 ~a~~g~~~DriPv~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~ 80 (335)
T cd00717 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDVE 80 (335)
T ss_pred ccccCCCCCCCCeeeehhcccccHHHHHHHccC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHcCCeEE
Confidence 689999999999999999999999999999888 6999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHH
Q 016596 130 IIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRL 209 (386)
Q Consensus 130 ~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~ 209 (386)
|+++.+|.+.+++++.+||++++.++++++++.++++++++++++++++|++++++||||+|++|++++..++|++++++
T Consensus 81 ~~~~~~p~~~~~i~~~~d~~~~~~~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~ 160 (335)
T cd00717 81 FVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKM 160 (335)
T ss_pred eCCCCCCcCCCCCCCHHHHHhccCCChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHH
Confidence 99877887788999999999987777778999999999999999999999999999999999999975556778889999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC
Q 016596 210 AFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS 289 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~ 289 (386)
++++||.+|++++.+++.+++++++++++|+|+|+++|+++++|||++|+||++||+|++++.+++.+++. .++|+||+
T Consensus 161 l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~-~ilh~cg~ 239 (335)
T cd00717 161 MYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGV-PVILFAKG 239 (335)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974333 47888887
Q ss_pred cc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCC
Q 016596 290 GG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHILNLGHGIKV 367 (386)
Q Consensus 290 ~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~ 367 (386)
+. +++.+.++|++++++++.+|+.++++.+|++++|+||+||..|.+|+|+|+++|+++|+.++ ++||||++||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~ 319 (335)
T cd00717 240 AGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILP 319 (335)
T ss_pred CHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCC
Confidence 76 68999999999999999999999999999999999999997668899999999999999998 58999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 016596 368 GTPEENVAHFFEVAKA 383 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~ 383 (386)
+||+||++||++++|+
T Consensus 320 ~tp~eNi~a~v~a~~~ 335 (335)
T cd00717 320 DTPPENVKALVEAVHS 335 (335)
T ss_pred CcCHHHHHHHHHHHhC
Confidence 9999999999999984
No 6
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=100.00 E-value=1.2e-68 Score=521.47 Aligned_cols=336 Identities=35% Similarity=0.576 Sum_probs=278.9
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccc
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e 122 (386)
|||||++++++||++||||||+++|+++++..|.....+++ +++++.||+++|+++++++++|++|++.+++|..++++
T Consensus 1 T~~er~~~~~~~~~~DrvPv~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~~d~~~~ae 79 (343)
T PF01208_consen 1 TSRERVLAALNGEPVDRVPVWPMRQAGRYLPEYAAEKTGIS-FPEYCRDPEKMAEAQIKAYEKFGPDFIKIPFDLTVEAE 79 (343)
T ss_dssp -S--HHHHHHTT---SS--B--TTSSSTTSHHHHHHHHHSS-HHHHCTSHHHHHHHHHHHHHHC--SEEE-S--TTHHHH
T ss_pred CchhHHHHHHcCCCCCCcCeEccccccccChHHHHHhcCcc-hHHHhcCHHHHHHHHHHHHHhcCCCEEEecCceeehHH
Confidence 57999999999999999999998888888888777666664 99999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCCccCCCCCChHHHhccCCCCC--CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCc
Q 016596 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP--EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSS 200 (386)
Q Consensus 123 ~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~--~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~ 200 (386)
+||+++.++++.+|.+.+++.+++|+++|+.+++ +++++.++++++++++++++++|+++++.|||++++.|+.|+
T Consensus 80 a~G~~v~~~~~~~P~~~~~~~~~eD~~~l~~~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~-- 157 (343)
T PF01208_consen 80 ALGCEVEFPEDDGPSVEEPIISPEDLDKLKIPDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGR-- 157 (343)
T ss_dssp GCTTEEEEETTTEEEESS---SHHHHHTS--GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSS--
T ss_pred HcCCeEEecCCCCCccccCcCCHHHHhhhcccCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCC--
Confidence 9999999999878888665449999999999876 578999999999999999999999999999999999999321
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC
Q 016596 201 KHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL 280 (386)
Q Consensus 201 ~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~ 280 (386)
++++++++++++||.++++++++++.+++++++++++|+|+|+++|.++++|||++|+||++||+||+++.+|+. |+
T Consensus 158 -g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~--g~ 234 (343)
T PF01208_consen 158 -GFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEA--GK 234 (343)
T ss_dssp -S-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHH--ET
T ss_pred -CHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHh--CC
Confidence 255788999999999999999999999999999999999999999977889999999999999999999999998 46
Q ss_pred -cEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-ccCCCHHHHHHHHHHHHHH-cC-CC
Q 016596 281 -SLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-ALFGSKDFITNRINDTVRK-AG-RW 355 (386)
Q Consensus 281 -~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l~gt~eev~~~v~~~i~~-~~-~~ 355 (386)
++++|+||++. .++.+.++|++++++++.+|+.++++++|++++|+||+||. .|.||+|+|+++|+++|+. .+ ++
T Consensus 235 ~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~ 314 (343)
T PF01208_consen 235 DPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGG 314 (343)
T ss_dssp E-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSS
T ss_pred CceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCC
Confidence 89999999997 79999999999999999999999999999999999999994 5579999999999999995 55 89
Q ss_pred CeEEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 356 KHILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 356 g~Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
||||++||++|++||+||++||++++|+|
T Consensus 315 gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 315 GFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp SEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998
No 7
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-69 Score=481.23 Aligned_cols=346 Identities=50% Similarity=0.885 Sum_probs=334.1
Q ss_pred CCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc
Q 016596 40 NVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119 (386)
Q Consensus 40 ~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~ 119 (386)
++..|+..+++|.+||++||+|||+|+|+|+|+++|+++++++ +|.+.|.|||...|.+++++++|.+|++++++|+.+
T Consensus 7 fp~~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILv 85 (359)
T KOG2872|consen 7 FPALKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILV 85 (359)
T ss_pred CCCCCchHHHHHhcCcccCCCchHHHHHhhcccHHHHHHHHhc-cHHHhcCCccceeeEecchhhccCCceeEEeecccc
Confidence 7788999999999999999999999999999999999999988 599999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCCCccCCCCCChHHHhccCCCCC-CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCC
Q 016596 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP-EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGG 198 (386)
Q Consensus 120 ~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~-~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~ 198 (386)
...++|..+.+.++.+|.+-.|+.+++|++++.++.+ ...++.+.+|+++++.++++++|++|++++|||++++++.||
T Consensus 86 ipqalgm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGG 165 (359)
T KOG2872|consen 86 IPQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGG 165 (359)
T ss_pred CchhcCceEEEeeccCCCCCCCCCCHHHHHHhccCcchhhhcchHHHHHHHHHHHhcCccceeeecCCchhhheeeecCC
Confidence 9999999999999999999889999999999987665 236899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC
Q 016596 199 SSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP 278 (386)
Q Consensus 199 ~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~ 278 (386)
+++.|.++-.+++..||..|.+|.++|+.+.+|+..|+++||..++++|+|++-+||++|+||.+||+++|+++++++.+
T Consensus 166 gSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~ 245 (359)
T KOG2872|consen 166 GSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLP 245 (359)
T ss_pred CchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC-----cEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC
Q 016596 279 DL-----SLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 279 ~~-----~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~ 353 (386)
.. |.+++.-|++..|+.++++|.|++++|+.+|++|+++..|.++++.||+||..|+||+|+|.+.+++.++.+|
T Consensus 246 ~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 246 ELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred hhcCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 55 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
..+||++.||++-++||+|++..++|++|+++|
T Consensus 326 ~~ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~~ 358 (359)
T KOG2872|consen 326 KSRYIANLGHGITPGTPPEHVAHFVEAVHKIGY 358 (359)
T ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999987
No 8
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=100.00 E-value=2.9e-66 Score=503.75 Aligned_cols=322 Identities=24% Similarity=0.362 Sum_probs=296.4
Q ss_pred CCCCCchHHHHHHHcCCCCCCccc---------ccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCC
Q 016596 39 KNVSVAEPMLLKAVRGEDVERPPV---------WLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPD 109 (386)
Q Consensus 39 ~~~~~~~ERv~aal~~e~~DRvPv---------~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D 109 (386)
+||+ +||++++++||++||+|| |+++++|++ ++|++.||+++++++++++++|++|
T Consensus 2 ~mt~--~er~~~~~~g~~~dr~Pv~~~~~~~~~~~~~~~G~~-------------~~e~~~~~~~~a~~~~~~~~~~~~D 66 (340)
T TIGR01463 2 EMTP--KERLFAAVTGQTVDDVPPCVPTQTLTTELMRECGAT-------------WPEAHRDGEAMAHLAIAAYEKFGGE 66 (340)
T ss_pred CCCH--HHHHHHHhcCCCCCcCCcccchHHHHHHHHHHhCCc-------------chhhcCCHHHHHHHHHHHHHHhCCC
Confidence 6888 899999999999999998 444555544 6778899999999999999999999
Q ss_pred eeeeccccccccccCCceEEecCCCCCcc-CCC-CCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCc
Q 016596 110 GVILFSDILTPLSGMNIPFDIIKGKGPVI-FDP-INTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGA 186 (386)
Q Consensus 110 ~~~~~~d~~~~~e~~G~~~~~~~~~~p~~-~~p-i~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~g 186 (386)
++.+++|+.+++|+||+++.|+++.+|.+ .+| +++++|+++++.++ .+++++.++++++++++++++++|++++++|
T Consensus 67 ~~~~~~d~~~~aea~G~~i~~~~~~~P~v~~~~~i~~~~d~~~l~~~~~~~~~~~~~l~ai~~l~~~~~~~~pv~g~v~G 146 (340)
T TIGR01463 67 AVRPPFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIPVVLEAIKILRERYGDTHPIIGPMGG 146 (340)
T ss_pred eeecCCCcchHHHhcCCeecCCCCCCCccccCCCCCCHHHhccccccCcCCcchhhHHHHHHHHHHHcCCceeeeCCCCc
Confidence 99999999999999999999998777877 447 69999999998764 4789999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHH
Q 016596 187 PFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLP 264 (386)
Q Consensus 187 Pft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P 264 (386)
|||+++++++ . .+++++++++||.+|++++++++.+++++++++++|+|+|+++|++++ ++||++|+||++|
T Consensus 147 P~Tla~~l~g---~---~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p 220 (340)
T TIGR01463 147 PFTLAQLMIG---V---SEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLP 220 (340)
T ss_pred HHHHHHHHHC---H---HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHH
Confidence 9999999995 3 356689999999999999999999999999999999999999999875 9999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCc-c-CCCHHHH
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGA-L-FGSKDFI 341 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~-l-~gt~eev 341 (386)
|++++++.+++.+ .+.++|+||++. +++.+.++|++++++|+.+|++++++.+|++++|+|||||.. + .||+|+|
T Consensus 221 ~~k~i~~~i~~~g--~~~ilH~CG~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI 298 (340)
T TIGR01463 221 YQKRLFAYIKEIG--GITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKV 298 (340)
T ss_pred HHHHHHHHHHhcC--CceEEEECCCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHH
Confidence 9999999999873 467999999997 689999999999999999999999999999999999999964 5 7999999
Q ss_pred HHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 342 TNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 342 ~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
+++++++++. ++|||+|||++|++||+||++||++++|+|+|
T Consensus 299 ~~~v~~~l~~---~~~Il~~gcgi~~~tp~eni~a~v~a~~~~~~ 340 (340)
T TIGR01463 299 KKLAKEVLYN---GGDIVMPGCDIDWMTPLENLKAMIEACKSIKY 340 (340)
T ss_pred HHHHHHHHHc---CCeEECCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999984 48999999999999999999999999999998
No 9
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=100.00 E-value=2.2e-66 Score=504.57 Aligned_cols=329 Identities=27% Similarity=0.382 Sum_probs=302.5
Q ss_pred CCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccc
Q 016596 39 KNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDIL 118 (386)
Q Consensus 39 ~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~ 118 (386)
+||+ +||++++++|+++||+|||+++|+|++ +|..++. . +++|++.||+++|+++++++++||+|++.+++|+.
T Consensus 2 ~mt~--~er~~~~~~g~~~dr~Pv~~~~~~g~~--e~~~~~g-~-~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~ 75 (339)
T PRK06252 2 ELTP--KERLLNALKGKEVDRVPVICVTQTGTV--ELMDITG-A-YWPEAHSDPEKMADLAIAGYEVAGFEAVRVPFCMT 75 (339)
T ss_pred CCCH--HHHHHHHHCCCCCCccCccchhhhHHH--HHHHHcC-C-CchhccCCHHHHHHHHHHHHHhcCCCeeccCcchH
Confidence 6888 899999999999999999999998887 5655544 4 49999999999999999999999999999999999
Q ss_pred cccccCCceEEecC-CCCCc-cCCCCCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHH
Q 016596 119 TPLSGMNIPFDIIK-GKGPV-IFDPINTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVV 195 (386)
Q Consensus 119 ~~~e~~G~~~~~~~-~~~p~-~~~pi~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~ 195 (386)
+++|+||+++.|.+ +.+|. .++++++.+|+.++..++ .+++++.++++++++++++++++|++++++||||++++++
T Consensus 76 ~~aea~G~~v~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~ 155 (339)
T PRK06252 76 VEAEAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLM 155 (339)
T ss_pred HHHHHhCCeecCCCCCCCCcccccccccChhhhhcccchhhCccHhHHHHHHHHHHHHcCCcCceeCccCChHHHHHHHH
Confidence 99999999999974 46785 578899999999997643 3689999999999999999988999999999999999999
Q ss_pred cCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHH
Q 016596 196 EGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTV 273 (386)
Q Consensus 196 ~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i 273 (386)
+ .+ +++++++++||.+|++++++++.+++++++++++|+|+|+++|++++ ++||++|+||++||++++++.+
T Consensus 156 g---~~---~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i 229 (339)
T PRK06252 156 G---PK---NFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEV 229 (339)
T ss_pred H---HH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHh
Confidence 5 33 56799999999999999999999999999999999999999999875 9999999999999999999999
Q ss_pred HhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCc-Ccc-CCCHHHHHHHHHHHHH
Q 016596 274 KQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDP-GAL-FGSKDFITNRINDTVR 350 (386)
Q Consensus 274 ~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~-~~l-~gt~eev~~~v~~~i~ 350 (386)
++. ++++|+||++. .++.+.++|++++++++.+|+.++++.+|++++++||+|| ..| .||+|+|+++|+++++
T Consensus 230 ~~~----~~ilH~cG~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~ 305 (339)
T PRK06252 230 KGL----PTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLE 305 (339)
T ss_pred ccC----CcEEEECCCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHH
Confidence 863 57899999997 6899999999999999999999999999999999999999 455 8999999999999998
Q ss_pred HcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 351 KAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 351 ~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
. +++||++||+++++||+||++||++++|+|||
T Consensus 306 ~---g~~Il~~gcgi~~~tp~enl~a~v~a~~~~~~ 338 (339)
T PRK06252 306 D---GVDILAPGCGIAPKTPLENIKAMVEARKEYYA 338 (339)
T ss_pred c---CCCEEcCCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4 37899999999999999999999999999997
No 10
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00 E-value=8e-65 Score=490.67 Aligned_cols=318 Identities=25% Similarity=0.356 Sum_probs=292.6
Q ss_pred HHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceE
Q 016596 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPF 128 (386)
Q Consensus 49 ~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~ 128 (386)
+++++|+++||+|||+++|+|+ ++|..++.. +++|++.|||+++|++++++++||+|++.+++|+.+++++||+++
T Consensus 1 ~~~~~g~~~dr~Pv~~~~~~~~--~e~~~~~g~--~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~~ea~G~~v 76 (326)
T cd03307 1 LAALNGQPVDRVPVICPTQTGT--VELMEATGA--YWPEAHSDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEALGCEV 76 (326)
T ss_pred CccccCCCCCccCcccchhhHH--HHHHHHhCC--cchhhhcCHHHHHHHHHHHHHHhCCCeeecCCccchHHHhcCCee
Confidence 3689999999999999999887 677666543 399999999999999999999999999999999999999999999
Q ss_pred EecCC-CCCcc-CCCCCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHH
Q 016596 129 DIIKG-KGPVI-FDPINTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 205 (386)
Q Consensus 129 ~~~~~-~~p~~-~~pi~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~ 205 (386)
.|.++ .+|.+ .+|+++.+|++++..++ .+++++.++++++++++++++++|++++++||||++++++| .+ +
T Consensus 77 ~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g---~~---~ 150 (326)
T cd03307 77 DWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG---VE---N 150 (326)
T ss_pred ccCCCCCCccccCCCCCCHHHHhhccccccccccHHHHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHh---HH---H
Confidence 99864 47876 78999999999886533 46899999999999999999899999999999999999995 34 5
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE
Q 016596 206 IKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 206 ~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
++++++++||.+|++|+++++.+++++++++++|+|+|+++|++++ ++||++|+||++||+|++++.+++ .+++
T Consensus 151 ~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~i 226 (326)
T cd03307 151 FLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG----CPTI 226 (326)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc----CCcE
Confidence 5689999999999999999999999999999999999999999975 789999999999999999999986 3689
Q ss_pred EEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 284 LYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 284 ~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+|+||++. +++.+.++|++++++++.+|+.++++.+|++++++||+||. .| .||+|+|+++|+++++.+ +|||+
T Consensus 227 lh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~g---~~Il~ 303 (326)
T cd03307 227 LHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLEDG---VDILA 303 (326)
T ss_pred EEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHcc---CCEec
Confidence 99999987 68999999999999999999999999999999999999997 55 899999999999999973 59999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHh
Q 016596 361 LGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 361 ~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+||++|++||+||++||++++++
T Consensus 304 ~Gc~i~~~tp~env~a~v~a~~e 326 (326)
T cd03307 304 PGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CcCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999986
No 11
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=100.00 E-value=7.1e-62 Score=471.30 Aligned_cols=319 Identities=32% Similarity=0.510 Sum_probs=293.4
Q ss_pred HHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceEE
Q 016596 50 KAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFD 129 (386)
Q Consensus 50 aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~~ 129 (386)
++++|+++||||+|+|.+.+. .+|.++ +++|+++|++++++++++++++|++|++++++|+.+++++||+++.
T Consensus 2 ~a~~g~~~drvPv~~~~~~~~--~~~~g~-----~~~e~~~d~e~~~e~~~~~~~~~~~D~~~~~~d~~~~~ealG~~i~ 74 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGGA--AEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR 74 (330)
T ss_pred chhcCCCCCccceeeeecccc--hhhcCc-----cHHHHhcCHHHHHHHHHHHHHHcCCCeEEeccCccchHHhcCCeEe
Confidence 689999999999999887654 555554 3999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcc-CCCCCChHHHhccCCCC--CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHH
Q 016596 130 IIKGKGPVI-FDPINTDAEVDQVREFD--PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206 (386)
Q Consensus 130 ~~~~~~p~~-~~pi~~~eD~~~l~~~d--~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~ 206 (386)
++++.+|.+ .+++++.+|++++..++ .++|++.++++++++++++++++|+++++.||||++.+++| .+++
T Consensus 75 ~~~~~~p~v~~~~~~~~~d~~~~~~~~~~~~~r~~~~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g------~~~~ 148 (330)
T cd03465 75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF 148 (330)
T ss_pred ecCCCCCccccccCCCHHHHhhccCCCcCccchHHHHHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHh------HHHH
Confidence 998778877 45689999999765433 37899999999999999999889999999999999999985 3467
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE
Q 016596 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL 284 (386)
Q Consensus 207 ~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~ 284 (386)
+++++++||.++++++.+++.+++++++++++|+++|+++|++++ ++||++|+||++||+|++++.+++. |.++++
T Consensus 149 ~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~l 226 (330)
T cd03465 149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH 226 (330)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEE
Confidence 899999999999999999999999999999999999999999875 7899999999999999999999987 568999
Q ss_pred EecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcC-C-CCeEE
Q 016596 285 YASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAG-R-WKHIL 359 (386)
Q Consensus 285 H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~-~-~g~Il 359 (386)
|+||++. .++.+.++|+++++++...|+.++++.+|++++++||+||. .| .||+|+|+++|+++|+.++ + +||||
T Consensus 227 H~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il 306 (330)
T cd03465 227 HNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYIL 306 (330)
T ss_pred EECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996 68999999999999999999999999999999999999997 67 8999999999999999987 3 89999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++||++|++||+|||+||++|||+
T Consensus 307 ~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 307 SSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999985
No 12
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=100.00 E-value=2.7e-59 Score=459.07 Aligned_cols=326 Identities=18% Similarity=0.155 Sum_probs=283.0
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc--c
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT--P 120 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~--~ 120 (386)
++.||+.++++||++||||+.+. .+.+...|.++ +++|+++|++++++++.+.+++|++|++.+++++.. +
T Consensus 4 er~eR~~~~~~g~~~DRvP~~~~--~~~~~~~~~G~-----~~~e~~~d~~~~a~~~~~~~~~~g~D~~~~~~~l~~~~~ 76 (378)
T cd03308 4 ERVQRLKDAIEGKKPDRVPILSQ--FTEWFIQYAGM-----TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPPSF 76 (378)
T ss_pred HHHHHHHHHHcCCCCCceeecch--hhHHHHHHcCc-----cHHHHhcCHHHHHHHHHHHHHHcCccccccccccCCchH
Confidence 46899999999999999999653 34455555554 399999999999999999999999999999999888 7
Q ss_pred cccCCceEEecC--CCCCcc-CCCCCChHHHhccCC-CCC---C------------C---ChhHHHHH------------
Q 016596 121 LSGMNIPFDIIK--GKGPVI-FDPINTDAEVDQVRE-FDP---E------------E---SVPYVGKA------------ 166 (386)
Q Consensus 121 ~e~~G~~~~~~~--~~~p~~-~~pi~~~eD~~~l~~-~d~---~------------~---~~~~~~ea------------ 166 (386)
+++||+++.+.+ +..|.+ .+++++.+|++++.. |.. + + +++.++++
T Consensus 77 aealG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~lpr~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~ 156 (378)
T cd03308 77 YQALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIADPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNTNG 156 (378)
T ss_pred HHHhcccceecCCCCccCcchhhccCCHHHHHHHHhCHHHHHHHhHhhhhhhhhcccchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999987542 223433 457899999984432 100 2 3 66677888
Q ss_pred --HHHHH-HHhCCceeEEeecCcHHH-HHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 167 --LTILR-EEVNNEAAVLGFVGAPFT-LASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 167 --~~~l~-~~~g~~~~v~~~~~gPft-~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
+++++ +++|+.+|+.+.+.|||+ +|+.|+| +++++++++++||.+|++|+++++.+++|+++++++|+++
T Consensus 157 ~~~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~g------~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~ 230 (378)
T cd03308 157 PIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLRG------FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPG 230 (378)
T ss_pred HHHHHHHhhccCCccccceeEeCChHHHHHHHhC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888 888988999999999997 7778884 6688999999999999999999999999999999999995
Q ss_pred ---EEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC-EEEcCCCCCHHHHHH
Q 016596 243 ---VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD-VVSLDWTVDMAEGRR 317 (386)
Q Consensus 243 ---i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d-~l~~d~~~dl~e~~~ 317 (386)
+.++++++++|||++|+||++||+||+++.+++. |.++++|+||++. +++.+.++|.+ ++++++.+|++++++
T Consensus 231 ~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~--g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~ 308 (378)
T cd03308 231 PVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR--GQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKE 308 (378)
T ss_pred ceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHH
Confidence 4445568889999999999999999999999986 5689999999998 59999999998 777777799999999
Q ss_pred HhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCCCCc--HHHHHHHHHHHHh
Q 016596 318 RLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTP--EENVAHFFEVAKA 383 (386)
Q Consensus 318 ~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~~tp--~Eni~a~~~a~~~ 383 (386)
.+|++++|+||+||..| .||+|+|+++|+++|+.++ ++||||++||+++++|| +||++||++++|+
T Consensus 309 ~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~~ 378 (378)
T cd03308 309 KLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred HhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 99999999999999866 7999999999999999998 78999999999999998 9999999999985
No 13
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00 E-value=1.3e-46 Score=360.84 Aligned_cols=297 Identities=20% Similarity=0.271 Sum_probs=262.2
Q ss_pred ccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeec-cccccccccCCceEEecCCCCCccC
Q 016596 61 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILF-SDILTPLSGMNIPFDIIKGKGPVIF 139 (386)
Q Consensus 61 Pv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~-~d~~~~~e~~G~~~~~~~~~~p~~~ 139 (386)
|||+++|++++.+.|..+ +. ++.+.+.|++.++++....+ +|+|.+..+ +++..+++++|+.+.+.++..|.+.
T Consensus 1 Pv~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~g~D~~~~~~~~~~~~~ealg~~~~~~~~~~p~v~ 75 (306)
T cd00465 1 PVQCEGQTGIMEASETMA--IS-EEPGETSKAEWGITLVEPEE--IPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CeEEEccCccccHHHHhh--cC-CchhhhCCchhhceeecccc--CCCCeeeecCcceeehhhhcCceEEecCCCCCCCC
Confidence 889999999988766542 22 48999999999999988877 999999999 9999999999999977666666554
Q ss_pred CCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHH
Q 016596 140 DPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHA 219 (386)
Q Consensus 140 ~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ 219 (386)
.++.+. ...+++.++++++.++++. ++|+++++.||||++.++++. + .++.+++++|+.+++
T Consensus 76 ~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~GP~Tla~~l~~~---~---~~~~~~~~~p~~~~~ 137 (306)
T cd00465 76 EIDEEE----------DPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSMSM---G---DALMALYERPEAMHE 137 (306)
T ss_pred CcccCC----------ChhhHHHHHHHHHHHHhcc--ccceEeecCCHHHHHHHHHcc---c---HHHHHHHHChHHHHH
Confidence 333221 1357889999999998885 689999999999999999962 2 456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHH
Q 016596 220 LLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLE 294 (386)
Q Consensus 220 ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~ 294 (386)
+++.+++.+++++++++++|+++|++.|++++ ++||++|++|++|++|++++.++.. +.++++|+||++. .++
T Consensus 138 ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~--~~~~~lH~cg~~~~~~~ 215 (306)
T cd00465 138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAG--EVPIVHHSCYDAADLLE 215 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhc--CCceEEEECCCHHHHHH
Confidence 99999999999999999999999999999875 4799999999999999999999875 5688999999976 689
Q ss_pred HHHhcCCCEEEcCCCC-CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcH--
Q 016596 295 RLALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPE-- 371 (386)
Q Consensus 295 ~l~e~g~d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~-- 371 (386)
.+.++|++++++|... |+.++++.+|++++|+|||+|..+.||+|+|+++++++++.+++ ||||++||++++++|+
T Consensus 216 ~l~~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~~ 294 (306)
T cd00465 216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYKP 294 (306)
T ss_pred HHHHhCcceEecccccCCHHHHHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCcH
Confidence 9999999999999887 99999999999999999999995589999999999999999866 8999999999999999
Q ss_pred HHHHHHHHHHHh
Q 016596 372 ENVAHFFEVAKA 383 (386)
Q Consensus 372 Eni~a~~~a~~~ 383 (386)
||++||++++++
T Consensus 295 enl~a~v~a~~~ 306 (306)
T cd00465 295 EHLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHHhhC
Confidence 999999999985
No 14
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=100.00 E-value=3.6e-38 Score=301.58 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=180.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEecCCcC----C
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADN-GAQAVQIFDSWAT----E 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~-G~d~i~i~d~~~~----~ 252 (386)
++......||||+++.|+| +++++++++++||.+|++|+++++.+++|+++++++ |+|+|+++|+|++ +
T Consensus 113 ~~~~~~~~Gpf~~a~~l~g------~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~ 186 (321)
T cd03309 113 VIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF 186 (321)
T ss_pred eeccCCCCCHHHHHHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc
Confidence 3344566799999999985 667889999999999999999999999999999998 9999999999875 6
Q ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCC-CHHHHHHHhCCCeeEEecCC
Q 016596 253 LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 253 iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd 330 (386)
|||++|+||++||+||+++.+++.+ +.++++|+||++. +++.+.++|++++++++.. |+.++++.+|++++|+||+|
T Consensus 187 LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlD 265 (321)
T cd03309 187 ISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAID 265 (321)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCC
Confidence 9999999999999999999999874 5789999999986 7899999999999999986 99999999999999999999
Q ss_pred cCcc-C-CCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 331 PGAL-F-GSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 331 ~~~l-~-gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
|..| . +|+|+|+++|+++++.++ +++||++++|++|.++++||++|+-+.
T Consensus 266 p~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T cd03309 266 DVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRRVSAF 318 (321)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcccCHHHHHHHHHh
Confidence 9876 4 569999999999999998 699999999999999999999998664
No 15
>PRK04326 methionine synthase; Provisional
Probab=99.92 E-value=7.2e-24 Score=205.35 Aligned_cols=260 Identities=14% Similarity=0.155 Sum_probs=192.9
Q ss_pred HHHhhcCHHHHHHHhhhhHHHhCCCee----------eeccccccccccCCceEEecCCC---CCccCCCCCChHHHhcc
Q 016596 85 FRERSENVDLVVEISLQPWHVFKPDGV----------ILFSDILTPLSGMNIPFDIIKGK---GPVIFDPINTDAEVDQV 151 (386)
Q Consensus 85 ~~e~~~d~e~~aea~~~~~~~f~~D~~----------~~~~d~~~~~e~~G~~~~~~~~~---~p~~~~pi~~~eD~~~l 151 (386)
+.+...++ ++..+..++++|+|.+ ...+.......++|+.+++.+.. .|.+..++
T Consensus 40 l~~~~~~a---~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~~~~~~~~~~~~~~~P~v~g~~--------- 107 (330)
T PRK04326 40 LHEAFDDA---VRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGNNYFRKPSVVGKI--------- 107 (330)
T ss_pred HHHHHHHH---HHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCceeccCceeccccccccCCeEEEec---------
Confidence 44444444 6677788899999988 33444445566677766643211 12221111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 016596 152 REFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKY 231 (386)
Q Consensus 152 ~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~ 231 (386)
...+ +..+++++.+++..++ .++.+.+.||+|++..+.. .+ ..+++|.++ .+.+.+.++
T Consensus 108 ~~~~-----~~~l~~~~~~~~~~~~-~~vk~~l~GP~Tla~~~~~-----~~------y~~~~e~~~----~l~~~~~~~ 166 (330)
T PRK04326 108 EYKE-----PMLVDEFEFAKSVTYT-RPVKVPITGPYTIAEWSFN-----EY------YKDKEELVF----DLAKVINEE 166 (330)
T ss_pred cCCC-----CCcHHHHHHHHhcccC-CCceEeccCHHHHHhhccc-----cc------CCCHHHHHH----HHHHHHHHH
Confidence 1111 3446667777776544 7899999999999976642 11 113344444 455788888
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT 309 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~ 309 (386)
++++.++|++.|++.||..+. +|+.+ +++.++++++++.++ ..+.+|+| |+.. .++.+.++|+|++++|..
T Consensus 167 i~~l~~~G~~~iqidEP~l~~-~~~~~-~~~~~~l~~~~~~~~-----~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 167 IKNLVEAGAKYIQIDEPALAT-HPEDV-EIAVEALNRIVKGIN-----AKLGLHVCYGDYSRIAPYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHHHCCCCEEEecCchhhc-CHHHH-HHHHHHHHHHHhCCC-----CEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeC
Confidence 899999999999998886543 67777 888899999999772 36799999 8877 589999999999999876
Q ss_pred C----CHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC---CcHHHHHHHHHHH
Q 016596 310 V----DMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVG---TPEENVAHFFEVA 381 (386)
Q Consensus 310 ~----dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~---tp~Eni~a~~~a~ 381 (386)
. +++.+++..+++..++|+||+... .+|+|+|++.++++++.....+++++|+|+++.- ++.+|+++|++++
T Consensus 240 ~~~~~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a 319 (330)
T PRK04326 240 NGNYKLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLPREIAYQKLVNMVKAT 319 (330)
T ss_pred CCCchhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 5 788887766677899999999766 8999999999999999655568999999998765 9999999999999
Q ss_pred Hhh
Q 016596 382 KAI 384 (386)
Q Consensus 382 ~~y 384 (386)
++.
T Consensus 320 ~~~ 322 (330)
T PRK04326 320 REV 322 (330)
T ss_pred HHH
Confidence 875
No 16
>PRK00957 methionine synthase; Provisional
Probab=99.83 E-value=3.8e-19 Score=170.47 Aligned_cols=189 Identities=16% Similarity=0.215 Sum_probs=150.1
Q ss_pred CCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc--CC
Q 016596 175 NNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA--TE 252 (386)
Q Consensus 175 g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~--~~ 252 (386)
+++.++.+.+.||+|++..+.+ +.+ ..++ .+++. +..+++...+.++++.++|++.|++.||.. ++
T Consensus 105 ~~~~~vK~~i~GP~Tla~~~~~----~~~---y~~~-~~~~~----~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~ 172 (305)
T PRK00957 105 DPNKGVKGIITGPSTLAYSLRV----EPF---YSDN-KDEEL----IYDLARALRKEAEALEKAGVAMIQIDEPILSTGA 172 (305)
T ss_pred CCCCceeEEecCHHHHHhhccc----ccc---cCCc-cHHHH----HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCC
Confidence 3567899999999999987653 111 1221 22444 555578888888889999999999988753 34
Q ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCC---CCCHHHHHHH-hCCCeeEEe
Q 016596 253 LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDW---TVDMAEGRRR-LGPDVAVQG 327 (386)
Q Consensus 253 iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~---~~dl~e~~~~-~g~~~~l~G 327 (386)
.+ .+++.++++++.+.++ ..+.+|+||+.. .++.+.++++|++++|. ..++..+++. .+++..++|
T Consensus 173 ~~----~~~~~~~~~~~~~~i~-----~~v~lH~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~G 243 (305)
T PRK00957 173 YD----LEVAKKAIDIITKGLN-----VPVAMHVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFG 243 (305)
T ss_pred ch----HHHHHHHHHHHHHhhC-----CceEEEECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEE
Confidence 44 3477788899888773 357899999998 58999999999999986 3578888753 457789999
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHhh
Q 016596 328 NVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKAI 384 (386)
Q Consensus 328 ~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~y 384 (386)
+||+... .+|+|+|++.++++++..+..+++++|+|++..-+ +.+|+++|++++++|
T Consensus 244 vId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 244 CVDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREI 304 (305)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 9999776 89999999999999998865689999999996544 999999999999986
No 17
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=99.69 E-value=4.5e-16 Score=151.02 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=154.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPV 256 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~ 256 (386)
.++.+.+.||+|++..+.+. + . ..+ ...+++++.+++.+.+.++++.++|++.|++-||. +..++++
T Consensus 119 ~~lk~~l~GP~Tla~~~~~~-----~-~---~~y---~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSFVR-----F-R---GYY---PSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred ccccccCCCCeeECCchhhc-----c-c---ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc
Confidence 56778899999998877631 1 0 023 23467999999999999999999999999998874 4577777
Q ss_pred HHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc----------c-hHHHHHhcCCCEEEcCCCC----CHHHHHHHhC
Q 016596 257 DFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG----------G-LLERLALTGVDVVSLDWTV----DMAEGRRRLG 320 (386)
Q Consensus 257 ~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~----------~-~l~~l~e~g~d~l~~d~~~----dl~e~~~~~g 320 (386)
++++..++.+++++.+.+...+..+.+|+| |+. . .++.+.+.++|+++++... +++.+++...
T Consensus 187 -~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~ 265 (332)
T cd03311 187 -PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPY 265 (332)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCC
Confidence 899999999999999986333567899999 776 4 5799999999999987643 7888877655
Q ss_pred CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHH
Q 016596 321 PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAK 382 (386)
Q Consensus 321 ~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~ 382 (386)
++..++|.||+... .+|+|+|++.++++++..+...++++|+|+++. +.-...+++|.++++
T Consensus 266 ~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 77899999999876 899999999999999988655799999999864 444666677776654
No 18
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=99.51 E-value=5.4e-13 Score=128.82 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
...++++.+++..+...++.+.+.||+|++..+.+. . . .|+..+++++.+++...++++++.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~---~-~---------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~ 166 (321)
T cd03310 100 LELDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLP---N-G---------EPDAYEDLAKSLAEFLREQVKELKNRGIV 166 (321)
T ss_pred ccHHHHHHHHHhcCCCCceEEEecCHHhHhHhhccc---c-C---------CchHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 445677777777766678999999999999888752 1 1 16788999999999999999999999999
Q ss_pred EEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCC-------H
Q 016596 242 AVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVD-------M 312 (386)
Q Consensus 242 ~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~d-------l 312 (386)
.|++.||..+ ..| .++..++.+++++.+++.. +..+.+|+||+ ..++.+.++|+|++++|.... +
T Consensus 167 ~iqidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~-~~~~~lHic~~-~~~~~l~~~~vd~l~~D~~~~~~~~~~~l 240 (321)
T cd03310 167 VVQIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKS-GGDVEVHLCAP-LDYEALLELGVDVIGFDAAALPSKYLEDL 240 (321)
T ss_pred EEEeCCCcccccccc----ccchHHHHHHHHHHHhhcc-CCceEEEECCC-CCHHHHHhCCCCEEEEecccCcccchhHH
Confidence 9999888643 555 6678899999999987621 23578999999 557899999999999987543 3
Q ss_pred HHHHHHh-CCCeeEEecCCcCc-cCCC---HHHHHHHHHHHHHHcC---CCCeEEecCCCCC---CCCcHHHHHHHHHHH
Q 016596 313 AEGRRRL-GPDVAVQGNVDPGA-LFGS---KDFITNRINDTVRKAG---RWKHILNLGHGIK---VGTPEENVAHFFEVA 381 (386)
Q Consensus 313 ~e~~~~~-g~~~~l~G~vd~~~-l~gt---~eev~~~v~~~i~~~~---~~g~Ils~gc~i~---~~tp~Eni~a~~~a~ 381 (386)
..+.+.- +++..-.|-+|... ...+ +|++ ++..+.++..+ +...+++|+|++. .+.-...++.|.+++
T Consensus 241 ~~~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~vtpscgL~~~p~~~a~~kl~~l~~~a 319 (321)
T cd03310 241 KKLLRIGVRTLILGLVVTDNEAKGRNAWKEIERL-EKLVRRLEEPGEVLDEILYLTPDCGLAFLPPQEARRKLALLAEAA 319 (321)
T ss_pred HHHHhcCCceEEEEeeecCCcccCCCHHHHHHHH-HHHHHHhccchhhhhhceeeCCCccCCCCCHHHHHHHHHHHHHHh
Confidence 3443322 33333455556521 1111 2233 33444444332 2569999999974 333444444444444
No 19
>PRK01207 methionine synthase; Provisional
Probab=99.32 E-value=1.2e-10 Score=111.77 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=139.4
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCC-EEEEecCCc
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADN------GAQ-AVQIFDSWA 250 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~------G~d-~i~i~d~~~ 250 (386)
.|+-+.+.||+|++.+... + .|.+.+ +++..+.+.+.+-++.+.++ |+. .|++-+|.-
T Consensus 119 kpvK~~ltGP~Ti~~~S~~----~--------~Y~~~~---el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal 183 (343)
T PRK01207 119 KPIKVPITGPYTMMDWSFN----D--------FYRDRY---DLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPAT 183 (343)
T ss_pred CCcEEEecCHHHHHHHhcc----c--------ccCCHH---HHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCc
Confidence 7899999999999877652 1 244543 56667777888888889888 887 699987763
Q ss_pred CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-C-Ccc-hHHHHHhcCCCEEEcCCCC-----------------
Q 016596 251 TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-G-SGG-LLERLALTGVDVVSLDWTV----------------- 310 (386)
Q Consensus 251 ~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G-~~~-~l~~l~e~g~d~l~~d~~~----------------- 310 (386)
. ....+.++....++..++.+. ..+.+|+| | +.. +++.+.++++|+++++...
T Consensus 184 ~--~~~~~l~~av~a~n~~~~gv~-----~~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~ 256 (343)
T PRK01207 184 T--THPDEMDIVVDSINKSVYGID-----NEFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQ 256 (343)
T ss_pred C--CChHHHHHHHHHHHHHHhCCC-----CcEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchh
Confidence 2 234566777777777777774 25789999 7 455 5899999999999987541
Q ss_pred CHHHHHHH---h-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCCeEEecCCCC---CCCCcHHHHHHHHHHH
Q 016596 311 DMAEGRRR---L-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWKHILNLGHGI---KVGTPEENVAHFFEVA 381 (386)
Q Consensus 311 dl~e~~~~---~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i---~~~tp~Eni~a~~~a~ 381 (386)
+++.+++. + .++..-.|-+|...- --|+|+|++.+++.++..+ ....+++|+|++ +...-.+.+++|++++
T Consensus 257 ~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa 336 (343)
T PRK01207 257 DLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAK 336 (343)
T ss_pred HHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 23333332 1 133456788888764 7999999999999999984 679999999997 5566788999999999
Q ss_pred Hhh
Q 016596 382 KAI 384 (386)
Q Consensus 382 ~~y 384 (386)
+++
T Consensus 337 ~~~ 339 (343)
T PRK01207 337 NNI 339 (343)
T ss_pred HHH
Confidence 875
No 20
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.22 E-value=6.9e-10 Score=107.23 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=140.0
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-C-CCCH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-T-ELSP 255 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~-~iSp 255 (386)
.++-+.+.||+|++....+ + .|.+ ..+++..+.+.+.+.++++.+ |++.|++-+|.- . -++
T Consensus 128 ~~~K~vl~GP~T~~~~s~~----~--------~Y~~---~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~- 190 (326)
T PRK08575 128 SKLKAVLPGPLTYAVLSDN----E--------YYKN---LIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK- 190 (326)
T ss_pred CCccEEEecHHHHHHHhcc----c--------cCCC---HHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC-
Confidence 3567788999998754331 1 1333 357788888888888888888 999999988764 3 333
Q ss_pred HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc--chHHHHHhcCCCEEEcCCC---CCHHHHHHHhCCCeeEEecC
Q 016596 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG--GLLERLALTGVDVVSLDWT---VDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 256 ~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~--~~l~~l~e~g~d~l~~d~~---~dl~e~~~~~g~~~~l~G~v 329 (386)
+...+.+...++++.+.+ +.++.+|+| |.. ..++.+.++++|++++|.. .++..+.+.+.++....|-|
T Consensus 191 ~~~~~~~~~a~~~~~~~~-----~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~Gvi 265 (326)
T PRK08575 191 RDTLEKLPEVYKTMAKNV-----NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGIL 265 (326)
T ss_pred HHHHHHHHHHHHHHHhcC-----CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEE
Confidence 345666667777777766 246789999 742 3589999999999999863 25677766666677778999
Q ss_pred CcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHHHHHHhh
Q 016596 330 DPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 330 d~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~~a~~~y 384 (386)
|-..- ..|+|+|++.+++.++ .+....+++|+|++ |..+-.+.+++|.++ ++.
T Consensus 266 D~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 266 NARNTKMEKISTIRRIVNKVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred eCCCCCCCCHHHHHHHHHHHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 98765 8999999999999999 66779999999996 567778999999988 543
No 21
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.22 E-value=9.7e-10 Score=106.61 Aligned_cols=197 Identities=10% Similarity=0.160 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++.++.+++.. +.++-+++.||.|++..+.. ..|.+. .+++..+.+.+.+.++++.++|++.|
T Consensus 111 ~~~~~~~~~~~--~~~vK~~ipgP~tl~~~~~~------------~~Y~~~---~el~~dlA~al~~Ei~~L~~aG~~~I 173 (339)
T PRK09121 111 VEDAKFLRQQT--TQPIKWALPGPMTMIDTLYD------------DHYKSR---EKLAWEFAKILNQEAKELEAAGVDII 173 (339)
T ss_pred HHHHHHHHhcc--CCCceEEeCcHHHHHHHhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34455555542 24678899999998865542 125554 46677788888889999999999999
Q ss_pred EEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc------------------c-hHHHHHhcCCC
Q 016596 244 QIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG------------------G-LLERLALTGVD 302 (386)
Q Consensus 244 ~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~------------------~-~l~~l~e~g~d 302 (386)
++-|+.-+ +.+ ...++....+.+.++.+ ...+.+|+| |+. . +++.+.++++|
T Consensus 174 QiDeP~l~~~~~--~~~~~~v~~~n~~~~g~-----~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd 246 (339)
T PRK09121 174 QFDEPAFNVFFD--EVNDWGVAALERAIEGL-----KCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNID 246 (339)
T ss_pred EecccHHhhhhH--HHHHHHHHHHHHHHcCC-----CCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCC
Confidence 99886533 332 22333333334444333 246789999 753 1 36888899999
Q ss_pred EEEcCCC--CCHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC---CCCcHHHHHH
Q 016596 303 VVSLDWT--VDMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK---VGTPEENVAH 376 (386)
Q Consensus 303 ~l~~d~~--~dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~---~~tp~Eni~a 376 (386)
.+.++.. -...+..+.+.++....|-||...- ..++|+|++.+++.++..+....+++|+||+. .+.-.+.+++
T Consensus 247 ~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~ 326 (339)
T PRK09121 247 IISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNA 326 (339)
T ss_pred EEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHH
Confidence 9988642 1122334444566677899999875 79999999999999998876699999999975 4455788999
Q ss_pred HHHHHHhh
Q 016596 377 FFEVAKAI 384 (386)
Q Consensus 377 ~~~a~~~y 384 (386)
|.++++.+
T Consensus 327 l~~~a~~~ 334 (339)
T PRK09121 327 LSAGAEIV 334 (339)
T ss_pred HHHHHHHH
Confidence 99888754
No 22
>PRK06233 hypothetical protein; Provisional
Probab=99.14 E-value=1.7e-09 Score=106.23 Aligned_cols=210 Identities=16% Similarity=0.097 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++..+.+++..++..++..++.||.+++.... .+. ....|.+. .+++..+.+.+.+.++++.++|++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~----~~~----~~~~Y~~~---eel~~dlA~a~~~Ei~~L~~aG~~~I 188 (372)
T PRK06233 120 FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNR----SDN----WPKFYDSW---DDYLDDLAQAYHDTIQHFYDLGARYI 188 (372)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcHHhccCcc----ccc----ccccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 45566666654445567889999998762111 110 01245554 46788888889999999999999999
Q ss_pred EEecCC-cCCCC--------H---HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-----------hHHHHHhc
Q 016596 244 QIFDSW-ATELS--------P---VDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-----------LLERLALT 299 (386)
Q Consensus 244 ~i~d~~-~~~iS--------p---~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-----------~l~~l~e~ 299 (386)
++-|+. +.+.+ | +.+.++...+.+-+-..++..-.+..+.+|+| ||.. +++.|.++
T Consensus 189 QiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~ 268 (372)
T PRK06233 189 QLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL 268 (372)
T ss_pred EEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhC
Confidence 998865 32221 1 12334444433333333332211346788999 8773 36888999
Q ss_pred CCCEEEcCCC----CCHHHHHHHhC---CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-----
Q 016596 300 GVDVVSLDWT----VDMAEGRRRLG---PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK----- 366 (386)
Q Consensus 300 g~d~l~~d~~----~dl~e~~~~~g---~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~----- 366 (386)
++|.+.++.. .+++-+++... ++.+..|-||...- .-++|+|++.+++.++..+....+++|.|++.
T Consensus 269 ~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g 348 (372)
T PRK06233 269 NYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEG 348 (372)
T ss_pred CCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCcccccc
Confidence 9999988643 24544454432 46688899998765 79999999999999998875689999999975
Q ss_pred ----CCCcHHHHHHHHHHHHhh
Q 016596 367 ----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 367 ----~~tp~Eni~a~~~a~~~y 384 (386)
.+.-.+.++.|.+.+++.
T Consensus 349 ~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 349 NILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 234567788888888763
No 23
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.10 E-value=1.6e-08 Score=95.88 Aligned_cols=204 Identities=11% Similarity=0.099 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
+-+..+..+++.|...+|-+.++||+|++.+..++ + .| .+ ..+.+...+..++.+-++.+..+|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~--~-~Y--------~d--~~~~la~~ia~~l~~e~~~l~~~gv~~ 162 (344)
T PRK06052 96 IEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGG--T-IY--------TD--ILLILAKSVERFVENAIKSAKNFKIKT 162 (344)
T ss_pred HHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCC--c-cc--------cc--hHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 33455667788888888999999999999998852 1 22 22 125666777778888888899999999
Q ss_pred EEEecCCcCCCCHH-HHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH-HHHHhcC-CCEEEcCCC---CCHHHHH
Q 016596 243 VQIFDSWATELSPV-DFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTG-VDVVSLDWT---VDMAEGR 316 (386)
Q Consensus 243 i~i~d~~~~~iSp~-~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l-~~l~e~g-~d~l~~d~~---~dl~e~~ 316 (386)
|+|-+|.-+.-.+- ...+.+...+..+...+...|-++++.+|+ .++ +.+.+++ +|++++... .++.-+.
T Consensus 163 IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~----~l~~~~i~~~~~idvi~~E~A~~~~~L~~l~ 238 (344)
T PRK06052 163 ISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS----PLYYELICETPGINVIGVESAATPSYLDLID 238 (344)
T ss_pred EEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh----HhhHHHHhcCCCCCEEeeeccCChHHHHHHh
Confidence 99988764422211 122334444444433332222244555666 455 8999998 999998754 2444444
Q ss_pred HH----hCCCeeEEecCCc--C------------------------cc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 317 RR----LGPDVAVQGNVDP--G------------------------AL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 317 ~~----~g~~~~l~G~vd~--~------------------------~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
+. + ++..=.|-+|. . .- --|+|+|.+.+++.++..+...+.++|+||+
T Consensus 239 ~~~~e~~-dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGL 317 (344)
T PRK06052 239 KKVLEDT-DTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGL 317 (344)
T ss_pred hhhhhhc-CCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCC
Confidence 43 3 34455677777 3 11 4899999999999999998789999999998
Q ss_pred C----CCCcHHHHHHHHHHHHhh
Q 016596 366 K----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 366 ~----~~tp~Eni~a~~~a~~~y 384 (386)
- .....+.+++|+++++.+
T Consensus 318 K~~~e~~~A~~KL~nmv~aa~~~ 340 (344)
T PRK06052 318 GSWPSQELAFRLLENVAKAINEF 340 (344)
T ss_pred CCChhhHHHHHHHHHHHHHHHHH
Confidence 4 234577889999998875
No 24
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.05 E-value=7.5e-09 Score=101.53 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++-++.+++.. +..++..++.||.+++....+ .. . ....|.+. .++++.+.+.+.+.++++.++|++.|
T Consensus 119 ~~~~~~l~~~~-~~~~~K~~ipgP~~l~~~~~~---~~-~---~~~~Y~~~---~~~~~dlA~al~~Ei~~L~~aG~~~I 187 (368)
T PRK06520 119 LEDFRFLKSIS-GDATPKMTIPSPSVLHFRGGR---KA-I---DATVYPDL---DDYFDDLAKTWRDAIKAFYDAGCRYL 187 (368)
T ss_pred HHHHHHHHhhc-cCCCCCEEcCcHHHHHhhccc---cc-c---chhcCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34455555543 334667889999998743111 00 0 01245554 47788888888999999999999999
Q ss_pred EEecCC-cCCCCHHHHHHh---------hHHHHHHHHHHHHh-hCCCCcEEEEec-CCcc-----------hHHHH-Hhc
Q 016596 244 QIFDSW-ATELSPVDFEEF---------SLPYLKQIVDTVKQ-THPDLSLILYAS-GSGG-----------LLERL-ALT 299 (386)
Q Consensus 244 ~i~d~~-~~~iSp~~f~ef---------~~P~~k~l~~~i~~-~~~~~~~~~H~c-G~~~-----------~l~~l-~e~ 299 (386)
++-|+. +.++++++...+ ....+.++++.+-+ .-.+..+.+|+| ||.. .++.| .++
T Consensus 188 QiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~ 267 (368)
T PRK06520 188 QLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGV 267 (368)
T ss_pred EecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhc
Confidence 998864 456664422111 01111133332222 101334678999 8862 36775 589
Q ss_pred CCCEEEcCCCC----CHHHHHHHh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-------
Q 016596 300 GVDVVSLDWTV----DMAEGRRRL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK------- 366 (386)
Q Consensus 300 g~d~l~~d~~~----dl~e~~~~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~------- 366 (386)
++|.+.++... +++.++-.- +++.+..|-||...- .-++|+|++.+++.++..+....+++|+|++.
T Consensus 268 ~vd~~~lE~~~~r~g~~e~L~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~ 347 (368)
T PRK06520 268 NVDAFFLEYDNERAGGFEPLRFIPPGHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNS 347 (368)
T ss_pred CCCeEEEEeccCCCCCcchHHHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCC
Confidence 99999875431 123222211 245677899998875 79999999999999998875689999999975
Q ss_pred --CCCcHHHHHHHHHHHHh
Q 016596 367 --VGTPEENVAHFFEVAKA 383 (386)
Q Consensus 367 --~~tp~Eni~a~~~a~~~ 383 (386)
.+.-.+.|+.|.+++++
T Consensus 348 l~~~~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 348 LSEEQQWAKLRLVVEIANE 366 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 23456678888888876
No 25
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=99.04 E-value=9.9e-09 Score=108.74 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=138.9
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CC----
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TE---- 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~---- 252 (386)
.|+-+++.||.|++.+..- +. +.+ ..+++..+...+.+.++.+.++|++.|+|-++.- ..
T Consensus 553 ~~vK~~ltGP~Ti~~~s~~----r~--------~~~---~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~ 617 (766)
T PLN02475 553 RPMKGMLTGPVTILNWSFV----RN--------DQP---RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 617 (766)
T ss_pred CccceEEecHHHHHhhhhc----cc--------CCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcC
Confidence 4888999999998755442 11 111 3577888888889999999999999999988642 11
Q ss_pred -CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-C---HHHHHHHhC-CCee
Q 016596 253 -LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-D---MAEGRRRLG-PDVA 324 (386)
Q Consensus 253 -iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-d---l~e~~~~~g-~~~~ 324 (386)
...+.|.+++...++...+.++. +..+.+|+| |+.. +++.+.++.+|+++++..- + ++.+++.++ ++.+
T Consensus 618 ~~~~~~~l~~av~af~~~~~~v~~---~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~I 694 (766)
T PLN02475 618 KSEHAFYLDWAVHSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (766)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCC---CCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeE
Confidence 22345556555555555555542 345788999 8877 6899999999999997642 2 455545333 3457
Q ss_pred EEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHHhh
Q 016596 325 VQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAKAI 384 (386)
Q Consensus 325 l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~~y 384 (386)
..|-+|...- .-|+|+|++.+++.++..+...++++|+||+-. ..-.+.+++|+++++..
T Consensus 695 glGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~ 758 (766)
T PLN02475 695 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLL 758 (766)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7788898765 799999999999999999877999999999854 33466788899988864
No 26
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=99.00 E-value=1.2e-08 Score=108.51 Aligned_cols=188 Identities=14% Similarity=0.175 Sum_probs=138.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCC----
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATE---- 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~---- 252 (386)
.|+-+++.||.|++..... +.+ . ...+++..+...+.+.++.+.++|++.|++-+|. ..-
T Consensus 548 ~~vK~~ltGP~T~~~~s~~----r~~--------~---~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~ 612 (758)
T PRK05222 548 KPVKGMLTGPVTILNWSFV----RDD--------Q---PREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLR 612 (758)
T ss_pred CCCcEEEecHHHHHHHHhc----ccC--------C---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCccc
Confidence 4688999999998754432 111 1 1356778888888899999999999999998864 221
Q ss_pred -CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC-CC---HHHHHHHhC-CCee
Q 016596 253 -LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT-VD---MAEGRRRLG-PDVA 324 (386)
Q Consensus 253 -iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~-~d---l~e~~~~~g-~~~~ 324 (386)
-+.+.|.+++...++..++.+.. +..+.+|+| |+.. +++.+.++++|+++++.. .+ +..+.+ .+ ++..
T Consensus 613 ~~~~~~~l~~~v~a~n~a~~~~~~---~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~i 688 (758)
T PRK05222 613 RSDWDAYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEI 688 (758)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCC---CCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeE
Confidence 23455667776666666665543 346789999 8876 689999999999999754 22 223222 22 3457
Q ss_pred EEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHHhh
Q 016596 325 VQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAKAI 384 (386)
Q Consensus 325 l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~~y 384 (386)
..|-+|...- .-|+|+|++.+++.++..+...++++|+||+-. +.-...++.|++++++.
T Consensus 689 glGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~ 752 (758)
T PRK05222 689 GPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKEL 752 (758)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 7888898775 799999999999999998767899999999854 34466778888888864
No 27
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=99.00 E-value=2.8e-08 Score=97.29 Aligned_cols=188 Identities=18% Similarity=0.111 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++..+.+++. + .++-..+.||+|++..... +. -|.++ .++++.+.....+.++.+.++|++
T Consensus 135 ~~l~~~~~a~~~-~--~~~K~~i~GP~T~~~ls~~----~~-------~Y~~~---~el~~dla~~y~~el~~L~~aG~~ 197 (360)
T cd03312 135 KLLDEYLEAKAL-G--INTKPVLLGPVTFLKLSKA----KG-------GGFDR---LSLLDKLLPVYKELLKKLAAAGAE 197 (360)
T ss_pred hHHHHHHHHHhc-C--CCCcEEEECHHHHHHHhcc----cc-------cCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344455555443 3 4567788999998733321 10 02333 477888888888999999999999
Q ss_pred EEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
.|++-||. ...++.+ +.+.+. +.++.+.+..++..+.+|+| |+.. .++.+.++++|++++|.. .+++.+
T Consensus 198 ~IQiDEP~l~~~~~~~-~~~~~~----~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l 272 (360)
T cd03312 198 WVQIDEPALVLDLPEE-WLAAFK----RAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAV 272 (360)
T ss_pred EEEeeCChhhcCCCHH-HHHHHH----HHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHH
Confidence 99998875 4456543 334333 34444433211356889999 7765 578899999999988753 367777
Q ss_pred HHHh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 316 RRRL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 316 ~~~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
++.+ .++....|-||...- ..++|++.+.++++.+.. .....++|+|++ |.++..|
T Consensus 273 ~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~~lP~~~~~e 333 (360)
T cd03312 273 LKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCSLLHVPVDLENE 333 (360)
T ss_pred HhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCcCCCcccccc
Confidence 6644 367788899999876 899999999999999977 668999999996 5444333
No 28
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=98.97 E-value=4.1e-09 Score=101.98 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=124.3
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPV 256 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~ 256 (386)
.++.+.+.||+|++..... + ......+++..+.+.+.+.++++.++|+..|++-+|.- +.++..
T Consensus 121 ~~vK~~i~gP~tl~~~~~~----~-----------~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~ 185 (324)
T PF01717_consen 121 KPVKGTITGPSTLADPSAN----R-----------YYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDA 185 (324)
T ss_dssp SSBEEEEE-HHHHHHTSEE----S-----------SSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSS
T ss_pred cccccccCHHHHhhchhcc----c-----------cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhh
Confidence 3477788999998765542 1 11223466777777888888899999999999988752 222221
Q ss_pred H--HHH-hhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCC----CCHHHHHHHhCCCeeEEe
Q 016596 257 D--FEE-FSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWT----VDMAEGRRRLGPDVAVQG 327 (386)
Q Consensus 257 ~--f~e-f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~----~dl~e~~~~~g~~~~l~G 327 (386)
. -.+ +-.....+.++.+-+. .+..+.+|+|+... .++.+.++++|+++++.. .+++-+++.-.++....|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lG 264 (324)
T PF01717_consen 186 SFDRDEYLDEAVAAEALNRAVKG-EDATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRELPSGKKVVLG 264 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTST-TTSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhccCC-CCCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHhCcCCceEEEE
Confidence 1 111 1122233444443222 36788999997653 368999999999987532 356666663446677789
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHh
Q 016596 328 NVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKA 383 (386)
Q Consensus 328 ~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~ 383 (386)
-||+..- .-|+|+|++.+++.++.......+++|+||+..-+ -.+.++.|+++++|
T Consensus 265 vv~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 265 VVDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp ES-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 9988765 68999999999999998776789999999986543 34567778888875
No 29
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=98.96 E-value=3.3e-08 Score=105.09 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=130.6
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCC--C
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TEL--S 254 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~i--S 254 (386)
.++-+.+.||+|++..... + .+ ....++++.+...+.+.++.+.++|+..|++-+|.- ..+ .
T Consensus 542 ~~vK~~LtGPvT~l~~s~~----r----------~d-~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~ 606 (750)
T TIGR01371 542 KPVKGMLTGPVTILNWSFV----R----------DD-IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLR 606 (750)
T ss_pred CCCceEEechHHHHhhhhh----c----------cC-CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCcc
Confidence 5788999999998744321 0 01 123577888888888999999999999999988753 222 2
Q ss_pred HHHHHH---hhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-C---HHHHHH--HhCCCe
Q 016596 255 PVDFEE---FSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-D---MAEGRR--RLGPDV 323 (386)
Q Consensus 255 p~~f~e---f~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-d---l~e~~~--~~g~~~ 323 (386)
.+.+++ .+...++..++.+.. +..+.+|+| |+.. .++.+.++++|+++++..- + +..+.+ .++. -
T Consensus 607 ~~~~~~~l~~a~~~~~~~~~~v~~---~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~-~ 682 (750)
T TIGR01371 607 KSDWPEYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPN-G 682 (750)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCC---CCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCC-e
Confidence 233444 333333333333332 346789999 6766 6899999999999998542 2 333333 2333 3
Q ss_pred eEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHhh
Q 016596 324 AVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKAI 384 (386)
Q Consensus 324 ~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~y 384 (386)
...|-+|...- .-++|++.+.++++++.......+++|+|++..-. -...++.|++++++.
T Consensus 683 ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~ 747 (750)
T TIGR01371 683 IGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEA 747 (750)
T ss_pred EEEEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 66788888776 78999999999999998866689999999986544 445566788888765
No 30
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=98.88 E-value=5e-08 Score=93.88 Aligned_cols=192 Identities=17% Similarity=0.208 Sum_probs=136.3
Q ss_pred hCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCC
Q 016596 174 VNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATE 252 (386)
Q Consensus 174 ~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~ 252 (386)
+.. .|+.+.+.||.|++.+-.. + -+.. -+++...+...+.+.++.+.++|+..|++-++. +..
T Consensus 122 ~~~-~~~K~~ltGP~ti~~~s~~-----------~-~~~~---~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~ 185 (330)
T COG0620 122 LTE-KPVKGMLTGPVTILLWSFN-----------R-YYIS---REELAKDIALALRDEVKDLEDAGIKIIQIDEPALREG 185 (330)
T ss_pred ccC-ccceeeeccHHhhHhhhcc-----------c-cCCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcC
Confidence 344 7888899999996655432 1 1222 357777888888889999999999999987754 222
Q ss_pred CCH---HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hHHHHHhcCCCEEEcCCC---CC-HHHHHHHhCCCe
Q 016596 253 LSP---VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LLERLALTGVDVVSLDWT---VD-MAEGRRRLGPDV 323 (386)
Q Consensus 253 iSp---~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l~~l~e~g~d~l~~d~~---~d-l~e~~~~~g~~~ 323 (386)
+.. +.|.+.+...++..+..... +..+.+|+|.. .. .++.+.++.+|+++++.. ++ +..+.+.-.++-
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~~~~---d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~~~~~ 262 (330)
T COG0620 186 LPLRRDDDYLEWAVEAINLAAAGVGA---DTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEEVKYDKE 262 (330)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCC---CcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHhccCCCe
Confidence 222 34666666666666555432 56788999965 44 468888999999988654 33 334444333454
Q ss_pred eEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHHHHHHhh
Q 016596 324 AVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 324 ~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~~a~~~y 384 (386)
.-.|-+|...- .-|+|+|.+.+++.++......+.++|+|++ |...-.+.++.|+++++..
T Consensus 263 Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~ 327 (330)
T COG0620 263 IGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEI 327 (330)
T ss_pred eecceEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 55677776665 6899999999999999998779999999997 4566777888888888753
No 31
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=98.78 E-value=3.3e-07 Score=97.56 Aligned_cols=186 Identities=18% Similarity=0.138 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
.++.++..++ .| .++-..+.||+|++..... +. -+.++ .++++.+.....+.++.+.++|++.
T Consensus 132 ~~~e~~~A~~-~g--~~~Kpvl~GP~T~l~lsk~----~~-------~y~~~---~~ll~~L~~~y~~~l~~L~~~G~~~ 194 (750)
T TIGR01371 132 PLEEYLEAKE-LG--IETKPVLLGPITFLKLSKA----VE-------EPFEP---LSLLEKLLPVYKEVLKKLAEAGATW 194 (750)
T ss_pred HHHHHHHHHh-cC--CCCeEEEECHHHHHHHhCc----cC-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 3444444433 23 4556678899997755431 00 12333 3677888888888889999999999
Q ss_pred EEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHHH
Q 016596 243 VQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEGR 316 (386)
Q Consensus 243 i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~~ 316 (386)
|++-+|.- .-++++ ..+.+...++++...+. +.++++|+| |+.. .++.+.+++++++++|.. .++..+.
T Consensus 195 IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~~~~----~~ki~l~tyFg~~~~~~~~l~~lpvd~l~lD~v~~~~~L~~~~ 269 (750)
T TIGR01371 195 VQIDEPALVTDLSKE-DLAAFKEAYTELSEALS----GLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHGKGTLELVK 269 (750)
T ss_pred EEeeCchhcCCCCHH-HHHHHHHHHHHHHhccC----CceEEEECCCCchHHHHHHHHcCCCCEEEEEeccCcccHHHHH
Confidence 99988864 334443 55555556666655442 346789999 8876 589999999999999754 3566555
Q ss_pred HHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 317 RRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 317 ~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
..++ ++....|-||-... ..+++++.+.++++++.. ...+++|+|++ |.++..|
T Consensus 270 ~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~psCsLlhvP~~~~~e 328 (750)
T TIGR01371 270 AGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVSTSCSLLHVPVDLELE 328 (750)
T ss_pred hcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEeCCCCcccCCccCccc
Confidence 4355 56777899998776 899999999999999953 35999999996 5555444
No 32
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=98.77 E-value=4.1e-07 Score=96.58 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=127.9
Q ss_pred cCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhh
Q 016596 184 VGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFS 262 (386)
Q Consensus 184 ~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~ 262 (386)
+.||+|++...... ..+ +++ ..-.++++.+.....+.++.+.++|++.|+|-+|.- .-+++ .+.+.+
T Consensus 155 l~GP~T~l~Lsk~~---~~~-------~~~-~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~-~~~~~~ 222 (766)
T PLN02475 155 LVGPVSYLLLSKPA---KGV-------DKS-FDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLES-HKLQAF 222 (766)
T ss_pred EECHHHHHHHhccc---ccc-------cCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCH-HHHHHH
Confidence 78999987654420 001 111 113477888888888999999999999999988864 33444 567777
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcC-CCEEEcCCC---CCHHHHHHH-hC-CCeeEEecCCcCc
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTG-VDVVSLDWT---VDMAEGRRR-LG-PDVAVQGNVDPGA 333 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g-~d~l~~d~~---~dl~e~~~~-~g-~~~~l~G~vd~~~ 333 (386)
...++++.+.+. +.++++|+| |+.. .++.+.+++ +|++++|.. .++..+++. ++ ++....|-||-..
T Consensus 223 ~~ay~~l~~~~~----~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRN 298 (766)
T PLN02475 223 KTAYAELESTLS----GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRN 298 (766)
T ss_pred HHHHHHHHhccC----CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCC
Confidence 777777777653 357889999 8876 489999999 999999854 356666443 54 5677789899887
Q ss_pred c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 334 L-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 334 l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
. ..+.+++.+.++++++..+...++++|+|++ |.++..|
T Consensus 299 iw~~dl~~~~~~i~~~~~~~~~~~l~v~psCsLlhvP~~~~~e 341 (766)
T PLN02475 299 IWANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNE 341 (766)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCccCCcccccc
Confidence 6 8999999999999999776468999999996 5444433
No 33
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=98.72 E-value=8.7e-07 Score=94.52 Aligned_cols=180 Identities=17% Similarity=0.083 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++..+.+++. | .++-..+.||+|++..... .. -+.++ .++++.+.....+.++.+.++|++
T Consensus 137 ~~l~e~~~ak~~-g--~~~K~vl~GP~T~l~ls~~---~~--------~~~~~---~ell~dl~~~y~~~l~~L~~aG~~ 199 (758)
T PRK05222 137 KLLDEFEEAKAL-G--INTKPVLLGPVTFLWLSKS---KG--------EGFDR---LDLLDDLLPVYAELLAELAAAGAE 199 (758)
T ss_pred cHHHHHHHHHhC-C--CCceEEEccHHHHHHHhcc---cc--------cCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 445556656554 3 4667788999998733221 00 01222 467888888888999999999999
Q ss_pred EEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
.|++-||. +..++++ ..+.+...++++.+.. ++..+.+|+| |+.. .++.+.++++|++++|.. .+++.+
T Consensus 200 ~IQiDEP~l~~~~~~~-~~~~~~~~y~~l~~~~----~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l 274 (758)
T PRK05222 200 WVQIDEPALVLDLPQE-WLEAFKRAYEALAAAK----PRPKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAAL 274 (758)
T ss_pred EEEeeCchhhcCCCHH-HHHHHHHHHHHHhcCC----CCCCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHH
Confidence 99998875 4456654 3344444555554421 1346889999 7665 479999999999988642 467777
Q ss_pred HHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 316 RRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 316 ~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
++.++ ++....|-||.... ..++|++.+.++++.+.. ..++++|+|++
T Consensus 275 ~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL 324 (758)
T PRK05222 275 LKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSL 324 (758)
T ss_pred HhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCC
Confidence 66453 56788899999876 899999999999999876 68999999996
No 34
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00086 Score=65.93 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=116.4
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC--cCC-CC
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW--ATE-LS 254 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~--~~~-iS 254 (386)
.|+-|+++||.|++.+-.- ++..--|+-+-.+.-.+..-++.+..+|..+|++-++. -++ +.
T Consensus 553 rPmKGMLTgPvTiL~WSF~---------------R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR 617 (765)
T KOG2263|consen 553 RPMKGMLTGPVTILNWSFV---------------RNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLR 617 (765)
T ss_pred CcccccccCceEEEEeccc---------------cCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcc
Confidence 5888999999987654321 11122245555566666667777888999999986643 132 33
Q ss_pred HHH---HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecC
Q 016596 255 PVD---FEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 255 p~~---f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~v 329 (386)
... |-.+....++-....+.+. ..+--|.|=. .+ +++.++++.+|++++++.-+=.++...|...+---.+|
T Consensus 618 ~aE~~~Yl~WAv~aFRi~~sgVqd~---TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~I 694 (765)
T KOG2263|consen 618 KAEHSFYLDWAVHAFRITNSGVQDS---TQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (765)
T ss_pred hhhHHHHHHHHHHHhhhcccccccc---chhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCc
Confidence 222 2222222222222223221 1234467743 34 67999999999999987544333333333322233345
Q ss_pred CcCcc------CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC----CCCcHHHHHHHHHHHHhh
Q 016596 330 DPGAL------FGSKDFITNRINDTVRKAGRWKHILNLGHGIK----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 330 d~~~l------~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~----~~tp~Eni~a~~~a~~~y 384 (386)
-|... .-+.+|+.+.+.+++.......+-++|+|++- +.+.+. ++.|++|++..
T Consensus 695 GpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKTR~~~E~~~~-L~~Mv~AAk~~ 758 (765)
T KOG2263|consen 695 GPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKTRGYTEVKPA-LKNMVAAAKLI 758 (765)
T ss_pred CCceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCcccCCCccccHH-HHHHHHHHHHH
Confidence 55432 37889999999999999887799999999984 355544 88899998864
No 35
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=97.19 E-value=0.0061 Score=58.34 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++.++.. +..| ..+...+-||+|.+..-.. .. .....++++.+.+...+.++.+.++|+.
T Consensus 135 ~~~~~~~eA-~~~G--~~~kpvL~GP~TfL~Lsk~----~~-----------~~~~~~ll~~l~~vY~~ll~~L~~~G~~ 196 (310)
T PF08267_consen 135 KLLDEFREA-KALG--INTKPVLPGPVTFLLLSKN----ED-----------GSDPLDLLDDLLPVYAELLKELAAAGVE 196 (310)
T ss_dssp HHHHHHHHH-HHTT--GGEEEEEE-HHHHHHTSEE----TT-----------CCHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHH-Hhhh--cCCeeEEEcHHHHHHHcCc----CC-----------CCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444444 4444 3455567899997643221 10 0133468999999999999999999999
Q ss_pred EEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
-|++-+|.-. -+ ++.+.+-+...++++. .. .+.++++.+- |... .++.+.++|++++++|-. .++..+
T Consensus 197 ~VQldEP~Lv~d~-~~~~~~~~~~aY~~L~---~~--~~~~ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 197 WVQLDEPALVLDL-PEEWLEAFEEAYEELA---AA--PRPKILLATYFGDLGDNLELLLDLPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp EEEEE-GGGGSSG-CHHHHHHHHHHHHHHC---CT--TTSEEEEE--SS--CCHHHHHTTSSESEEEEETTTHCHHHHHH
T ss_pred EEEecCCeeecCC-CHHHHHHHHHHHHHHh---cC--CCCcEEEECCCCchhhHHHHHhcCCCcEEEeeccCCcccHHHH
Confidence 9999888632 23 4556666666666665 22 2566666654 5544 689999999999999864 356677
Q ss_pred HH-Hh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHH
Q 016596 316 RR-RL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVR 350 (386)
Q Consensus 316 ~~-~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~ 350 (386)
.+ .+ .+++...|-||-... ..+.+++.+.++++.+
T Consensus 271 ~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~ 308 (310)
T PF08267_consen 271 LKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLRE 308 (310)
T ss_dssp HHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHh
Confidence 76 45 467788999998876 8888888888877754
No 36
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.84 E-value=0.48 Score=44.48 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcC---
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG--- 300 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g--- 300 (386)
-++..+++++.+.++|.+.|=+.-+ ..||+.|+ .++.+.+..++..+..++-++...++...+.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~~~~~~---------~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFP---AASPGDFE---------AVKRIAREVLNAEICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHH---------HHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCC
Confidence 4566677888899999998876421 14787652 23333332234555555545554577777777
Q ss_pred -CCEEEcCCCC---------------CHHHH------HHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 301 -VDVVSLDWTV---------------DMAEG------RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 301 -~d~l~~d~~~---------------dl~e~------~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
++.+.+-... .+..+ .+..|.++++ +..+ .-..+++.+.+.++++.+.+.. .
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~--~~~~~~~~~~~~~~~~~~~G~~-~-- 159 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEF-SAED--ATRTDLDFLIEVVEAAIEAGAT-T-- 159 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-eeec--CCCCCHHHHHHHHHHHHHcCCC-E--
Confidence 8877653211 11211 1223433332 2111 1146788888888888765322 2
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++....+ .-..|+.+..+++.+++
T Consensus 160 i~l~DT~-G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 160 INIPDTV-GYLTPEEFGELIKKLKE 183 (268)
T ss_pred EEECCCC-CCCCHHHHHHHHHHHHH
Confidence 3332222 23355667777777665
No 37
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.72 E-value=1.2 Score=41.65 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
..++.++.+++.||+.|-++.. ....++++.=.+-+.| +++.+++.. +.|+.+|+.... .++.-.+.|++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~----~v~~~~~~~-~~plsiDT~~~~-vi~~al~~G~~ 97 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVP----VIKALRDQP-DVPISVDTYRAE-VARAALEAGAD 97 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH----HHHHHHhcC-CCeEEEeCCCHH-HHHHHHHcCCC
Confidence 3455667789999999998632 2236787653333444 455555542 578888875332 35555667999
Q ss_pred EEE-cCCC--CCHHHHHHHhCCCeeEEe--cCCcCc--c--C-CCHHHHHHHHHHHHHHcC-----CCCeEEecCCCCCC
Q 016596 303 VVS-LDWT--VDMAEGRRRLGPDVAVQG--NVDPGA--L--F-GSKDFITNRINDTVRKAG-----RWKHILNLGHGIKV 367 (386)
Q Consensus 303 ~l~-~d~~--~dl~e~~~~~g~~~~l~G--~vd~~~--l--~-gt~eev~~~v~~~i~~~~-----~~g~Ils~gc~i~~ 367 (386)
+++ +... .++.++.+++|-.+++|= +++... + + ...+++.+..++.++.+. ....||-||-+...
T Consensus 98 iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~k 177 (257)
T TIGR01496 98 IINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGK 177 (257)
T ss_pred EEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCccc
Confidence 985 4332 236677777877666642 222111 1 1 225667777777766543 24679999888654
Q ss_pred CCcHHHHHHHHHHHH
Q 016596 368 GTPEENVAHFFEVAK 382 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~ 382 (386)
+...|+ .++++.+
T Consensus 178 -s~~~~~-~~l~~i~ 190 (257)
T TIGR01496 178 -TPEHNL-ELLKHLE 190 (257)
T ss_pred -CHHHHH-HHHHHHH
Confidence 444443 3444443
No 38
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.48 E-value=0.65 Score=45.76 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..++.++.+.++|++.|=++-+. +|+..|+. ++.+.+..++..+..++-.+..-++...++|++.
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPA---MGEEERAV---------IRAIVALGLPARLMAWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHH---------HHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCE
Confidence 34556677888889999988765333 46655442 3333333223333333323333578888899988
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+.+-
T Consensus 89 i~i~ 92 (365)
T TIGR02660 89 VHIS 92 (365)
T ss_pred EEEE
Confidence 7654
No 39
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.27 E-value=0.75 Score=43.10 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++.+.++|++.|-++.|. .+|++++.. +.+. .... ...+..|.-.+..-++...+.|++.
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~---~~~~~~~~~-----~~l~-~~~~---~~~v~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPA---ASPQSRADC-----EAIA-KLGL---KAKILTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHHHH-----HHHH-hCCC---CCcEEEEecCCHHHHHHHHHcCcCE
Confidence 35566778888999999998876543 467766532 2222 1111 1234445544444578888999998
Q ss_pred EEcCC-----------CCCHHHHHHHh--------CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 304 VSLDW-----------TVDMAEGRRRL--------GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 304 l~~d~-----------~~dl~e~~~~~--------g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+.+.- ..+.+++.+.+ ...+.+..++- .....+++++.+.++++.+. +-..+.|. +
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e-da~r~~~~~l~~~~~~~~~~-g~~~i~l~---D 162 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE-DSFRSDLVDLLRVYRAVDKL-GVNRVGIA---D 162 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE-eeCCCCHHHHHHHHHHHHHc-CCCEEEEC---C
Confidence 76522 12333322222 01122322221 11234567777766666554 32234442 2
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
.-.-..|+.+..+++.+++
T Consensus 163 t~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 163 TVGIATPRQVYELVRTLRG 181 (262)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 2223455667777777665
No 40
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=95.20 E-value=2.2 Score=40.38 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC
Q 016596 228 MAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD 302 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d 302 (386)
.++.++.+++.|||.|-++- +.+..+|++.-.+-+.|.++.+.+.. ++|+. ++-... .++.-.+.|++
T Consensus 40 a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-----~~~IS--IDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 40 AVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-----EVWIS--VDTSKPEVIRESAKAGAH 112 (282)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCeEE--EECCCHHHHHHHHHcCCC
Confidence 34556668899999999874 23348999887777888877775433 34543 332233 46777788999
Q ss_pred EEE-cCC--CCCHHHHHHHhCCCeeEEec--CCcCcc--C---CC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCCC
Q 016596 303 VVS-LDW--TVDMAEGRRRLGPDVAVQGN--VDPGAL--F---GS-KDFITNRINDTVRKA---G--RWKHILNLGHGIK 366 (386)
Q Consensus 303 ~l~-~d~--~~dl~e~~~~~g~~~~l~G~--vd~~~l--~---gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~ 366 (386)
++| +.. ..++.+..++++-.+++|=. . |... . .+ .+++.+..++.++.+ | ....|+-||-++.
T Consensus 113 iINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~-p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~ 191 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGN-PKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFG 191 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC-CCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcC
Confidence 994 322 12444545567766777532 2 2222 1 11 344444555555543 2 3488999998874
Q ss_pred CCCcHHHHHHH
Q 016596 367 VGTPEENVAHF 377 (386)
Q Consensus 367 ~~tp~Eni~a~ 377 (386)
. +..+|+.-+
T Consensus 192 k-~~~~n~~ll 201 (282)
T PRK11613 192 K-NLSHNYQLL 201 (282)
T ss_pred C-CHHHHHHHH
Confidence 3 445666444
No 41
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=95.18 E-value=1.6 Score=41.18 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCC-----c
Q 016596 220 LLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGS-----G 290 (386)
Q Consensus 220 ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~-----~ 290 (386)
-++.+.+...+.++.+++-|+|.+.+ +.. .+...-+ -+.-..++.++.... ..|+++|. -|. .
T Consensus 137 ~fd~l~~ay~eq~~~Li~gG~D~iLi-ET~---~D~l~~K-aA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~ 208 (311)
T COG0646 137 TFDELVEAYREQVEGLIDGGADLILI-ETI---FDTLNAK-AAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQT 208 (311)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEE-ehh---ccHHHHH-HHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCc
Confidence 36777888888899999999999875 333 3333222 233344455544433 36877764 332 2
Q ss_pred c--hHHHHHhcCCCEEEcCCCC-------CHHHHHHHhCCCeeEEecCC--cC---cc--CCCHHHHHHHHHHHHHHcCC
Q 016596 291 G--LLERLALTGVDVVSLDWTV-------DMAEGRRRLGPDVAVQGNVD--PG---AL--FGSKDFITNRINDTVRKAGR 354 (386)
Q Consensus 291 ~--~l~~l~e~g~d~l~~d~~~-------dl~e~~~~~g~~~~l~G~vd--~~---~l--~gt~eev~~~v~~~i~~~~~ 354 (386)
. ++..+..+|++++.+.=.. .+.++.+.-..-++...|-- .. .+ ..|||+..+.+....++++
T Consensus 209 ~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~- 287 (311)
T COG0646 209 IEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG- 287 (311)
T ss_pred HHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC-
Confidence 2 3566777899988765332 33444444444455655532 21 12 4789999999999988863
Q ss_pred CCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 355 WKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 355 ~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
-=|++ ||- +|.||.|+||.++++
T Consensus 288 -vnIvG-GCC---GTTPeHIraia~~v~ 310 (311)
T COG0646 288 -VNIVG-GCC---GTTPEHIRAIAEAVK 310 (311)
T ss_pred -ceeec-ccc---CCCHHHHHHHHHHhc
Confidence 12444 554 678999999999986
No 42
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.05 E-value=3 Score=38.95 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g 300 (386)
+..++.++.+++.|||.|-++- +....++++.=.+-+.|..+.+-+.. +.|+.+-+ ... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-----~~plSIDT--~~~~v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-----DVLISVDT--FRAEVARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCcEEEeC--CCHHHHHHHHHhC
Confidence 3444566678999999999863 33447898876677777776665332 34543322 222 467677789
Q ss_pred CCEEE-cCCC---CCHHHHHHHhCCCeeEEe--cCCcCc--c---CCCHHHHHHHHHHHHHHcC--C---CCeEEecCCC
Q 016596 301 VDVVS-LDWT---VDMAEGRRRLGPDVAVQG--NVDPGA--L---FGSKDFITNRINDTVRKAG--R---WKHILNLGHG 364 (386)
Q Consensus 301 ~d~l~-~d~~---~dl~e~~~~~g~~~~l~G--~vd~~~--l---~gt~eev~~~v~~~i~~~~--~---~g~Ils~gc~ 364 (386)
+++++ +... ..+.++.+++|-.+++|= +++... . ....+++.+..++.++.+. | ...|+-||.+
T Consensus 97 ~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 97 ADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIG 176 (257)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCC
Confidence 99985 5432 235555667776666642 222211 1 1225677777777777654 2 3789999988
Q ss_pred CCCCCcHHHH
Q 016596 365 IKVGTPEENV 374 (386)
Q Consensus 365 i~~~tp~Eni 374 (386)
.... ...|+
T Consensus 177 f~ks-~~~~~ 185 (257)
T cd00739 177 FGKT-PEHNL 185 (257)
T ss_pred cccC-HHHHH
Confidence 6443 44443
No 43
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.00 E-value=1.1 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d 302 (386)
.++++.+++.|++++++..+.+. .+|.+..++++ +..++.+.+ ..|++.|++.++. -+ ....+.|+|
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~----~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVV----RAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 34455667799999998877764 79999888874 444555543 4789999876443 23 444567888
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 97 ~v~~ 100 (289)
T cd00951 97 GILL 100 (289)
T ss_pred EEEE
Confidence 7654
No 44
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.91 E-value=1.4 Score=41.15 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++.+.++|++.|-++-+. +++..++ .++.+.+...+..+..+.-.+..-++...+.|++.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~---~~~~~~e---------~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPA---MGEEERE---------AIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---CCHHHHH---------HHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCE
Confidence 45666778888889999988765332 4554432 33333332223444445323433467788899998
Q ss_pred EEcCCCCCH-----------H----------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 304 VSLDWTVDM-----------A----------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 304 l~~d~~~dl-----------~----------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
+.+-...+- + +..+..|-.+.+ + ...- .-+++.+.+.++++.+.+.. .+.|
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~---~~~~~~~~~~~~~~~~~~~~~~G~~-~i~l-- 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV-G---AEDASRADPDFLIEFAEVAQEAGAD-RLRF-- 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE-e---eccCCCCCHHHHHHHHHHHHHCCCC-EEEe--
Confidence 765322111 1 122223433221 1 1222 46788888888877664323 3333
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 016596 362 GHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|+.-.-..|+.+..+++++++
T Consensus 159 -~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 159 -ADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred -CCCCCCCCHHHHHHHHHHHHH
Confidence 222223456667777777765
No 45
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.88 E-value=1 Score=44.54 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++..++.++.+.++|++.|=++-|. ++++.|+ .++.+.+.+....+..++-....-++...++|++.+
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~p~---~~~~~~e---------~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGFPA---VSEDEKE---------AIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC---cChHHHH---------HHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 4455677788889999988765333 5666654 233333332222333442222224788888999877
Q ss_pred Ec
Q 016596 305 SL 306 (386)
Q Consensus 305 ~~ 306 (386)
.+
T Consensus 93 ~i 94 (378)
T PRK11858 93 HI 94 (378)
T ss_pred EE
Confidence 65
No 46
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=94.76 E-value=3.6 Score=38.55 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHH
Q 016596 215 KVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE 294 (386)
Q Consensus 215 e~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~ 294 (386)
..-+++.+.=.+...+.++.|++.|||.|-+.-. .+++.=.+-+.|..+.+ .+.. +.|+.+-+ -+...++
T Consensus 14 ~~~~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~----~~~~eE~~r~~~~v~~l----~~~~-~~plsIDT-~~~~v~e 83 (261)
T PRK07535 14 SIAEAIEAKDAAFIQKLALKQAEAGADYLDVNAG----TAVEEEPETMEWLVETV----QEVV-DVPLCIDS-PNPAAIE 83 (261)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC----CCchhHHHHHHHHHHHH----HHhC-CCCEEEeC-CCHHHHH
Confidence 3334455566677888889999999999877543 23333233344444444 3332 45654333 1222456
Q ss_pred HHHhc--CCCEEE-cCCC----CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc---C--CCCeEEecC
Q 016596 295 RLALT--GVDVVS-LDWT----VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA---G--RWKHILNLG 362 (386)
Q Consensus 295 ~l~e~--g~d~l~-~d~~----~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~---~--~~g~Ils~g 362 (386)
.-.+. |.++++ +... ..+.++.+++|-.++++- .+....-.|.++..+..++.++.+ | ...+|+-||
T Consensus 84 aaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~-~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPg 162 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALT-MDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPL 162 (261)
T ss_pred HHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 55665 889884 4321 124556677776666654 232222345666666666666554 3 257899998
Q ss_pred CCC
Q 016596 363 HGI 365 (386)
Q Consensus 363 c~i 365 (386)
-+.
T Consensus 163 i~~ 165 (261)
T PRK07535 163 VLP 165 (261)
T ss_pred CCc
Confidence 773
No 47
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.62 E-value=1.4 Score=41.86 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|++...++ ++.+.+.+++ ..+++.|.++... .+ ....+.|
T Consensus 24 l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~----~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 24 LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEEL----IRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHH----HHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 344555667799999998776654 7999998886 3445555543 4789999987543 23 4556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|.+.+
T Consensus 97 ~d~v~~ 102 (292)
T PRK03170 97 ADGALV 102 (292)
T ss_pred CCEEEE
Confidence 997755
No 48
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.32 E-value=1.4 Score=41.87 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 223 KFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 223 ~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
.-++..+++++.+.++|++.|=+. +|.+|+.+-...-+ .+.+..+.+. ++..+ ...+-+..-++.-.+.|++
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvg----sf~~p~~~p~~~d~--~e~~~~l~~~-~~~~~-~~l~~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVA----SFVSPKWVPQMADA--AEVMAGIQRR-PGVTY-AALTPNLKGLEAALAAGAD 94 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC----CCcCcccccccccH--HHHHHhhhcc-CCCeE-EEEecCHHHHHHHHHcCCC
Confidence 345666778888999999987654 45555544322211 3444444332 23333 3344333347888899999
Q ss_pred EEEcCCCC-----------CHH----------HHHHHhCCCeeEEecCCcCc-----cCCCHHHHHHHHHHHHHHcCCCC
Q 016596 303 VVSLDWTV-----------DMA----------EGRRRLGPDVAVQGNVDPGA-----LFGSKDFITNRINDTVRKAGRWK 356 (386)
Q Consensus 303 ~l~~d~~~-----------dl~----------e~~~~~g~~~~l~G~vd~~~-----l~gt~eev~~~v~~~i~~~~~~g 356 (386)
.+.+.-.. +.+ +..+..| +.+.++|.... -..+++.+.+.++++.+.+.+ .
T Consensus 95 ~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d-~ 171 (287)
T PRK05692 95 EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY-E 171 (287)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc-E
Confidence 77543111 111 1112233 23444443211 135778888888887765323 3
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+.|. ..+ .-..|+.+..+++.+++
T Consensus 172 i~l~--DT~-G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 172 ISLG--DTI-GVGTPGQVRAVLEAVLA 195 (287)
T ss_pred EEec--ccc-CccCHHHHHHHHHHHHH
Confidence 3332 222 22345556677766654
No 49
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.28 E-value=2.8 Score=39.72 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCc-c--hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSG-G--LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~-~--~l~~l~e~g 300 (386)
.++.++...+.|+|++.+.-|.-.-.|+ +-+.-|++++.++. +.|++++. +|.. + .+..+.+.+
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~i~~~~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~~ 152 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQ----EGLYQHFKAIAEEV-----DLPIILYNVPSRTGVSLYPETVKRLAEEP 152 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECcHHhcCCCCHHHHHHHHcCC
Confidence 4455666778999999987665433443 44556888888876 35777774 4543 2 356666655
Q ss_pred CCEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+ .++++..+++..++.|-|.
T Consensus 153 -~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d~ 186 (285)
T TIGR00674 153 -NIVAIKEATGNLERISEIKAIAPDDFVVLSGDDA 186 (285)
T ss_pred -CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECchH
Confidence 56665 444454 4555666666677666653
No 50
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.27 E-value=1.5 Score=41.49 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+.+++.+ +..++.+++ ..+++.|++.+.. -+ ....+.|
T Consensus 21 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 21 LEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVI----EFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 344555667899999998776664 79999988874 445555543 4688888876543 23 4556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 94 ad~v~v 99 (285)
T TIGR00674 94 ADGFLV 99 (285)
T ss_pred CCEEEE
Confidence 998754
No 51
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.20 E-value=1.9 Score=42.40 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++-.++.++.+.++|++.|=++-+. .|++.|+ ..+++.+ .+....+..|+..+..-++...++|++.
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~~e-----~i~~i~~----~~~~~~v~~~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPI---ASEGEFE-----AIKKISQ----EGLNAEICSLARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CChHHHH-----HHHHHHh----cCCCcEEEEEcccCHHHHHHHHHcCcCE
Confidence 34556677788889999988764332 4555542 2233333 2223455556655544578888999998
Q ss_pred EEcCCCC-----------CH----H------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 304 VSLDWTV-----------DM----A------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 304 l~~d~~~-----------dl----~------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
+.+.-.. +. . +..+..|-++.+ ....- ..+++.+.+.++++.+.+.+ .+.|.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~----~~eda~r~~~~~l~~~~~~~~~~g~~-~i~l~- 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF----SAEDATRTDIDFLIKVFKRAEEAGAD-RINIA- 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE----EEeecCCCCHHHHHHHHHHHHhCCCC-EEEEe-
Confidence 7652211 11 1 111223333222 11222 46778888877776654323 34442
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 016596 362 GHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+.-....|+.+..+++.+++
T Consensus 162 --DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 162 --DTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred --CCCCccCHHHHHHHHHHHhc
Confidence 22233455567777766654
No 52
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.12 E-value=5 Score=37.43 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~ 301 (386)
+...+.++.+++.|||.|-++-. .+..+|++.=.+-+.|..+.+.+.. +.|+.+-+ -+...++.-.+.|+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-----~~piSIDT-~~~~v~~aaL~~g~ 97 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-----DVPISVDT-FNAEVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-----CCeEEEeC-CcHHHHHHHHHhCC
Confidence 44556677789999999988742 2347888775565666666554322 34543222 12224677778889
Q ss_pred CEEE-cCCC---CCHHHHHHHhCCCeeEEecCC-cCc---c---CCCHHHHHHHHHHHHHHcC-----CCCeEEecCCCC
Q 016596 302 DVVS-LDWT---VDMAEGRRRLGPDVAVQGNVD-PGA---L---FGSKDFITNRINDTVRKAG-----RWKHILNLGHGI 365 (386)
Q Consensus 302 d~l~-~d~~---~dl~e~~~~~g~~~~l~G~vd-~~~---l---~gt~eev~~~v~~~i~~~~-----~~g~Ils~gc~i 365 (386)
++++ +... ..+.++.+.+|-.++++-.-+ +.. + ..+.+++.+.+++.++.+. ....|+-||-+.
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~ 177 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGF 177 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCc
Confidence 9884 4322 235666777877677764321 221 1 2356777777777777653 247899999886
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 016596 366 KVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 366 ~~~tp~Eni~a~~~a~~~ 383 (386)
.. +...|+ .+++..+.
T Consensus 178 ~k-~~~~~~-~~l~~i~~ 193 (258)
T cd00423 178 GK-TEEHNL-ELLRRLDA 193 (258)
T ss_pred cC-CHHHHH-HHHHHHHH
Confidence 54 444554 34444433
No 53
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.97 E-value=1.4 Score=43.01 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++.-+++++.+.++|++.|=+. ++.||+..-.+. -.+++++.+++. .+..+. -.|.+..-++...++|++.
T Consensus 66 s~e~Ki~ia~~L~~~GV~~IEvG----s~vspk~vPqma--d~~ev~~~i~~~-~~~~~~-~l~~n~~die~A~~~g~~~ 137 (347)
T PLN02746 66 PTSVKVELIQRLVSSGLPVVEAT----SFVSPKWVPQLA--DAKDVMAAVRNL-EGARFP-VLTPNLKGFEAAIAAGAKE 137 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----CCcCcccccccc--cHHHHHHHHHhc-cCCcee-EEcCCHHHHHHHHHcCcCE
Confidence 34555677888889999988654 234554221111 112233333331 122222 2244444578888999887
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+++.
T Consensus 138 v~i~ 141 (347)
T PLN02746 138 VAVF 141 (347)
T ss_pred EEEE
Confidence 6553
No 54
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.89 E-value=2.6 Score=40.28 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCCE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVDV 303 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d~ 303 (386)
+.++.+++.|+++|++..+.+. .+|++..++++ +.+++.+.+ .+|++.|+++++. -+ ....+.|+|+
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVV----RAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 4445567789999998777764 79999888863 344555543 4789999976443 23 4445678887
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
+.+
T Consensus 105 v~~ 107 (303)
T PRK03620 105 ILL 107 (303)
T ss_pred EEE
Confidence 644
No 55
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.46 E-value=4.8 Score=38.51 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCC-cCCCCH-------------------HHHHHhh--HHHHHHHHHHHHhhCCCCcEEEE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSW-ATELSP-------------------VDFEEFS--LPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~-~~~iSp-------------------~~f~ef~--~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
..+.+++..++|||+|-+=.-. .+.||+ +.|++.. +.++.++.+.+++. | +++.
T Consensus 32 A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~--G--i~~~ 107 (347)
T COG2089 32 AKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKR--G--IIFF 107 (347)
T ss_pred HHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHc--C--eEEE
Confidence 3455667778999987542211 122332 3455444 55678999999986 3 3444
Q ss_pred ecCCcc-hHHHHHhcCCCEEEcC--CCCCHHHHHH--HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 286 ASGSGG-LLERLALTGVDVVSLD--WTVDMAEGRR--RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 286 ~cG~~~-~l~~l~e~g~d~l~~d--~~~dl~e~~~--~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+---.. -.+.+..+++.++-+. +.+++.-++. +.++-+.+.-|+ .|-+||.+.+.-+-+.+.+ .++|-
T Consensus 108 SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGm------a~~~ei~~av~~~r~~g~~-~i~LL 180 (347)
T COG2089 108 SSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGM------ATIEEIEEAVAILRENGNP-DIALL 180 (347)
T ss_pred ecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEccc------ccHHHHHHHHHHHHhcCCC-CeEEE
Confidence 443332 4688888998888553 2345544443 345555554444 5677888777666555434 34443
Q ss_pred cCCCCCCCCc--HHHHHHHHHHHHhh
Q 016596 361 LGHGIKVGTP--EENVAHFFEVAKAI 384 (386)
Q Consensus 361 ~gc~i~~~tp--~Eni~a~~~a~~~y 384 (386)
-|.-..-+| .-|+++|.+....|
T Consensus 181 -hC~s~YPap~ed~NL~~i~~l~~~F 205 (347)
T COG2089 181 -HCTSAYPAPFEDVNLKAIPKLAEAF 205 (347)
T ss_pred -EecCCCCCCHHHhhHHHHHHHHHHh
Confidence 355444444 45888888877666
No 56
>PRK07094 biotin synthase; Provisional
Probab=93.42 E-value=4.8 Score=38.71 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
++.+.+.|+..+++.......+. .+++.++++.+++.. +..+.+ +.|... .+..|.+.|++.+++
T Consensus 79 ~~~~~~~g~~~i~l~gG~~~~~~--------~~~l~~l~~~i~~~~-~l~i~~-~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 79 AKKAYELGYRTIVLQSGEDPYYT--------DEKIADIIKEIKKEL-DVAITL-SLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred HHHHHHCCCCEEEEecCCCCCCC--------HHHHHHHHHHHHccC-CceEEE-ecCCCCHHHHHHHHHcCCCEEEe
Confidence 34455679998887532222233 246677888888742 444333 235543 489999999997765
No 57
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.38 E-value=4 Score=37.31 Aligned_cols=136 Identities=19% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC--C------c-chHHH----HHh
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG--S------G-GLLER----LAL 298 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG--~------~-~~l~~----l~e 298 (386)
++..++.|++.+.+-...+.. + ++......+++.+..+++ +.++++-.+- . . ..+.. ..+
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~-~----~~~~~~~i~~v~~~~~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSE-E----EREMLEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE 154 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCc-h----HHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHHH
Confidence 455778999987543333322 1 345566678888888876 6787764322 1 1 12333 567
Q ss_pred cCCCEEEcCCCCCHHHHHH---HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRR---RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~---~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+.+.+..+++.+++ ..+-.+.+.||+.. .|+++..+.++++++.+.. |+.++. .+ ...-|.+-+
T Consensus 155 ~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~----~~~~~~l~~~~~~~~~Ga~-gv~vg~--~i~~~~dp~~~~ 227 (235)
T cd00958 155 LGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKK----DSEEEFLKMVYDAMEAGAA-GVAVGR--NIFQRPDPVAML 227 (235)
T ss_pred HCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCC----CCHHHHHHHHHHHHHcCCc-EEEech--hhhcCCCHHHHH
Confidence 8999998776556655554 44434555566532 5788888889999886533 554443 33 223356666
Q ss_pred HHHHHHH
Q 016596 375 AHFFEVA 381 (386)
Q Consensus 375 ~a~~~a~ 381 (386)
+++.+.+
T Consensus 228 ~~~~~~~ 234 (235)
T cd00958 228 RAISAVV 234 (235)
T ss_pred HHHHHHh
Confidence 6665544
No 58
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=93.26 E-value=4.3 Score=37.78 Aligned_cols=150 Identities=17% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~ 294 (386)
++.+.+..++-++.+.+.|+|+|.+-. |+..-.+|+. ...+-+++..+++.- +.|+-+.+--|.. -|.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~et-----vaaM~~i~~~v~~~~-~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPET-----VAAMARIAREVRREV-SVPVGVNVLRNDPKAALA 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHH-----HHHHHHHHHHHHHhC-CCCEEeeeecCCCHHHHH
Confidence 666777788888999999999998754 2222344433 445667777777753 4565554433222 245
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc---c-CCCHHHHHHHHHHHHHHcCCC
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA---L-FGSKDFITNRINDTVRKAGRW 355 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~---l-~gt~eev~~~v~~~i~~~~~~ 355 (386)
.-..+|.+-+-+ ++. .++-..|+.++.++.++++|.... | ..+ +.+.++.+++.+...
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~---~~~~~~~a~~~~~aD 174 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRD---LEEAAKDAVERGGAD 174 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCC---HHHHHHHHHHhcCCC
Confidence 455567664431 111 245677888998899999998853 3 233 445566776666644
Q ss_pred CeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 356 KHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 356 g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
+.|++ |-..-..++++.++.+.++
T Consensus 175 aviVt-G~~TG~~~~~~~l~~vr~~ 198 (254)
T PF03437_consen 175 AVIVT-GKATGEPPDPEKLKRVREA 198 (254)
T ss_pred EEEEC-CcccCCCCCHHHHHHHHhc
Confidence 66665 3333344556666555443
No 59
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.18 E-value=5.8 Score=37.61 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCcc---hHHHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSGG---LLERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~~---~l~~l~e~ 299 (386)
-.++.++...++|+|++.+.-|.-.-.|+ +-+.-|++++.+.. +.|++++.+ |..- .+..+.+.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~----~~i~~~~~~ia~~~-----~~pv~lYn~P~~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQ----EGLYQHFKAIAEAT-----DLPIILYNVPGRTGVDILPETVARLAEH 154 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHHcC
Confidence 34456667778999999986665333443 33456788888775 357777754 3321 24444444
Q ss_pred CCCEEEc-CCCCCHHH---HHHHhCCCeeEEecCCc
Q 016596 300 GVDVVSL-DWTVDMAE---GRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 300 g~d~l~~-d~~~dl~e---~~~~~g~~~~l~G~vd~ 331 (386)
+ +++.+ +...|+.. ..+..+++..++.+-|.
T Consensus 155 p-~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 189 (292)
T PRK03170 155 P-NIVGIKEATGDLERVSELIELVPDDFAVYSGDDA 189 (292)
T ss_pred C-CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChH
Confidence 3 45544 33445554 44445555566555543
No 60
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=93.06 E-value=5.9 Score=35.78 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCEEE-EecC-CcCCCCHHHHHHhhH--------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--h
Q 016596 231 YVQYQADNGAQAVQ-IFDS-WATELSPVDFEEFSL--------------PYLKQIVDTVKQTHPDLSLILYASGSGG--L 292 (386)
Q Consensus 231 ~~~~~~e~G~d~i~-i~d~-~~~~iSp~~f~ef~~--------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~ 292 (386)
-++...++|+|.+- ++.+ +.-++|+++.++... +....+.+.+++. + +-+++.+|+.. .
T Consensus 15 da~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~--~-~d~vQLHg~e~~~~ 91 (210)
T PRK01222 15 DAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV--P-LDLLQLHGDETPEF 91 (210)
T ss_pred HHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc--C-CCEEEECCCCCHHH
Confidence 35566788999774 3433 344899998887653 2344566666664 2 34677777654 3
Q ss_pred HHHHHh-cCCCEE---EcCCCCCHHHHHHH-------------------------------hCCCeeEEecCCcCccCCC
Q 016596 293 LERLAL-TGVDVV---SLDWTVDMAEGRRR-------------------------------LGPDVAVQGNVDPGALFGS 337 (386)
Q Consensus 293 l~~l~e-~g~d~l---~~d~~~dl~e~~~~-------------------------------~g~~~~l~G~vd~~~l~gt 337 (386)
+..+.+ .+..++ ++....++..+++. ++..+.|.||+ |
T Consensus 92 ~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~~~~~p~~LAGGi-------~ 164 (210)
T PRK01222 92 CRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPAGLAKPWILAGGL-------N 164 (210)
T ss_pred HHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhhccCCCEEEECCC-------C
Confidence 555554 233333 22221233333222 22223333333 3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHHHHHHHHHHhh
Q 016596 338 KDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 338 ~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni~a~~~a~~~y 384 (386)
||.|.+.+ +..+..|.=+++|-+. |.--.++.+++++++++.+
T Consensus 165 peNv~~ai----~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 165 PDNVAEAI----RQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred HHHHHHHH----HhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 45554444 3344446667777776 3345888899998888764
No 61
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=93.05 E-value=7.3 Score=36.53 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=87.8
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-------cCCcc--h----HHHHHh
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-------SGSGG--L----LERLAL 298 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-------cG~~~--~----l~~l~e 298 (386)
++..++.|+|.+.+-..+++.- ++...-..+++.+.+++. |.|++++. .+... . .....+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~-----~~~~~~~~~~v~~~~~~~--g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSET-----EAEMLEDLGEVAEECEEW--GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChh-----HHHHHHHHHHHHHHHHHc--CCcEEEEEecCCCccCCCccHHHHHHHHHHHHH
Confidence 3356889999887765544321 333566678888888876 57877762 22111 1 234457
Q ss_pred cCCCEEEcCCCCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+-..+..+++.+++.. +-.+...||++. .|.++..+.++++++.+.. |. +.|-.+ ..+-|.+.+
T Consensus 172 ~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GGi~~----~~~~~~l~~v~~~~~aGA~-Gi--s~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 172 LGADIVKTNYTGDPESFREVVEGCPVPVVIAGGPKT----DTDREFLEMVRDAMEAGAA-GV--AVGRNVFQHEDPEAIT 244 (267)
T ss_pred HCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-EE--ehhhhhhcCCCHHHHH
Confidence 899999666555666555554 334777888864 4668888888888887544 33 333333 334478888
Q ss_pred HHHHHHHHh
Q 016596 375 AHFFEVAKA 383 (386)
Q Consensus 375 ~a~~~a~~~ 383 (386)
+++...+++
T Consensus 245 ~~l~~~v~~ 253 (267)
T PRK07226 245 RAISAVVHE 253 (267)
T ss_pred HHHHHHHhC
Confidence 888777664
No 62
>PRK13753 dihydropteroate synthase; Provisional
Probab=92.98 E-value=8.3 Score=36.43 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhc
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALT 299 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~ 299 (386)
+..++.++.+++.|||.|-++-. .+..+|++.=.+-+.|.++.+.+ . +.++ +..... .++.-.+.
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~----~--~~~I---SIDT~~~~va~~al~a 95 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD----Q--MHRV---SIDSFQPETQRYALKR 95 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh----C--CCcE---EEECCCHHHHHHHHHc
Confidence 44455666788999999998752 33589998877777788777653 2 2343 222222 36777789
Q ss_pred CCCEEE-cCCCC--CHHHHHHHhCCCeeEEecC-----CcCc-c--CCC-HHHHHHHHHHHHHHc---C--CCCeEEecC
Q 016596 300 GVDVVS-LDWTV--DMAEGRRRLGPDVAVQGNV-----DPGA-L--FGS-KDFITNRINDTVRKA---G--RWKHILNLG 362 (386)
Q Consensus 300 g~d~l~-~d~~~--dl~e~~~~~g~~~~l~G~v-----d~~~-l--~gt-~eev~~~v~~~i~~~---~--~~g~Ils~g 362 (386)
|+++++ +.... .+.++....+-.+++|=+- .+.. . +.. .+||.++..+.++.+ | ....||-||
T Consensus 96 GadiINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPG 175 (279)
T PRK13753 96 GVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPG 175 (279)
T ss_pred CCCEEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCC
Confidence 999984 44333 3444455566667775432 1211 1 111 334555555544443 3 358999999
Q ss_pred CCCC-CCCcHHHHHHH
Q 016596 363 HGIK-VGTPEENVAHF 377 (386)
Q Consensus 363 c~i~-~~tp~Eni~a~ 377 (386)
-|.. ..++..|+.-+
T Consensus 176 iGF~k~k~~~~n~~ll 191 (279)
T PRK13753 176 MGFFLSPAPETSLHVL 191 (279)
T ss_pred CCCCCCCChHHHHHHH
Confidence 9985 34667777544
No 63
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.86 E-value=4.8 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|+++|++..+.+. .||.+..++++.- .++.+.+ .+|++.|+.++.+ -+ ....+.|+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVAT----VVETVAG---RVPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHH----HHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHhCC
Confidence 34555677899999999887764 7999998886543 3444432 4788888876543 22 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 105 d~vlv 109 (309)
T cd00952 105 DGTML 109 (309)
T ss_pred CEEEE
Confidence 97754
No 64
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.85 E-value=3.3 Score=40.79 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++..++++.+.+.|+|-|+| -+.+++++|..-- +++..+|+.. +.|+.+|++-.... .-++ .|.|+
T Consensus 156 e~yv~~akel~~~g~DSIci-KDmaGlltP~~ay--------elVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGv 225 (472)
T COG5016 156 EYYVELAKELLEMGVDSICI-KDMAGLLTPYEAY--------ELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGV 225 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEe-ecccccCChHHHH--------HHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCc
Confidence 44556777889999999987 4566789986643 4567788776 58999999876652 4444 47899
Q ss_pred CEEEc-----CC---CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 302 DVVSL-----DW---TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
|++.. .+ ..+.+.....+.+. +-|+.+...-.+++.++.+++.+..
T Consensus 226 D~iDTAisp~S~gtsqP~tEtmv~aL~gt-----~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 226 DGIDTAISPLSGGTSQPATETMVAALRGT-----GYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred chhhhhhccccCCCCCCcHHHHHHHhcCC-----CCCccccHHHHHHHHHHHHHHHHHH
Confidence 87632 11 24555555555431 4455443444567777777666655
No 65
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.83 E-value=3.1 Score=39.13 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~ 299 (386)
.+.++++.+++.|++++++..+.+. .+|.+..++.+ +.+.+.++. ..+++.|+.+... .+ ....+.
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVI----EAVVEAVAG---RVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHHc
Confidence 3445556677789999998877764 79988887764 344444432 4789999887653 23 455677
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|++.+
T Consensus 92 Gad~v~v 98 (281)
T cd00408 92 GADGVLV 98 (281)
T ss_pred CCCEEEE
Confidence 9887754
No 66
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.60 E-value=7.1 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCCE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVDV 303 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d~ 303 (386)
+.++.+++.|++++++..+.+. .+|.+..++++.- .++.+++ ..|++.|+..++. -+ ....+.|+|+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEI----AVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHH----HHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhCCCE
Confidence 3444566899999998777764 7999888776543 3444433 4688888865432 12 3334567766
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
+.
T Consensus 103 v~ 104 (296)
T TIGR03249 103 YL 104 (296)
T ss_pred EE
Confidence 54
No 67
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.49 E-value=5.6 Score=38.04 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.+.++.+++.|+++|++..+.+. .+|.+...+. .+..++.+.. .+|++.+..++.+ -+ ....+.|+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 34455678899999999887764 7998887775 3445555543 3789999988854 23 44567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 101 d~il~ 105 (299)
T COG0329 101 DGILV 105 (299)
T ss_pred CEEEE
Confidence 98754
No 68
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.20 E-value=4.2 Score=41.97 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHH----HHHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE----RLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~----~l~e~g 300 (386)
++-.++.++.+.++|++.|=++-+ ..||+.|+.+ +++.+..+ +..+..++-....-++ .+.+.|
T Consensus 25 ~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~d~~~v-----~~i~~~~~----~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 25 VEEKLQIAKQLERLGVDVIEAGFP---ASSPGDFEAV-----KRIARTVK----NSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---CCChHHHHHH-----HHHHhhCC----CCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 445567778888999998876433 3688877643 45544332 3445555533322233 334667
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
.+.+++
T Consensus 93 ~~~v~i 98 (513)
T PRK00915 93 APRIHT 98 (513)
T ss_pred CCEEEE
Confidence 666654
No 69
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.15 E-value=3.4 Score=38.94 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++.-+++++.+.++|++.|=++ ++.||+.+-.+.- ...++..+... .+..+..+ |.+..-++...++|++.+
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvG----s~~~~~~~p~~~d--~~~~~~~l~~~-~~~~~~~~-~~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVT----SFVSPKWVPQMAD--AEEVLAGLPRR-PGVRYSAL-VPNLRGAERALAAGVDEV 90 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCCCcccccccCC--HHHHHhhcccC-CCCEEEEE-CCCHHHHHHHHHcCcCEE
Confidence 4666788889999999988754 3445543211110 00222232221 13333334 544445888889999887
Q ss_pred EcCCCC-----------CH----------HHHHHHhCCCeeEEecCCcCc---c--CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 305 SLDWTV-----------DM----------AEGRRRLGPDVAVQGNVDPGA---L--FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 305 ~~d~~~-----------dl----------~e~~~~~g~~~~l~G~vd~~~---l--~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.+.-.. +. -+..+..|. .+.+++.... . .-+++.+.+.++++.+.+.+ .+-
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~--~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i~ 167 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL--RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD-EIS 167 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC-EEE
Confidence 653222 11 112222333 3444443221 1 34677777777777654322 333
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|. ..+ .-..|+.+..+++.+++
T Consensus 168 l~--DT~-G~~~P~~v~~lv~~l~~ 189 (274)
T cd07938 168 LG--DTI-GVATPAQVRRLLEAVLE 189 (274)
T ss_pred EC--CCC-CccCHHHHHHHHHHHHH
Confidence 32 222 22345667777777654
No 70
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.03 E-value=6 Score=36.73 Aligned_cols=141 Identities=10% Similarity=0.063 Sum_probs=84.9
Q ss_pred HHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC--CC
Q 016596 234 YQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT--VD 311 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~--~d 311 (386)
.+.+.|+..++ ...+-..=||.-|+.+...-++.+.+..++. |.+++-=.. +...++.+.+ .+|++-+... .+
T Consensus 37 ~~~~~g~~~~r-~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~--Gl~~~Tev~-d~~~v~~~~e-~vdilqIgs~~~~n 111 (250)
T PRK13397 37 SAKKLGYNYFR-GGAYKPRTSAASFQGLGLQGIRYLHEVCQEF--GLLSVSEIM-SERQLEEAYD-YLDVIQVGARNMQN 111 (250)
T ss_pred HHHHcCCCEEE-ecccCCCCCCcccCCCCHHHHHHHHHHHHHc--CCCEEEeeC-CHHHHHHHHh-cCCEEEECcccccC
Confidence 36678888665 4444466788899999888888888888876 567544332 2234677778 4999977543 33
Q ss_pred HH--HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH---HHHHHHHHHHhhc
Q 016596 312 MA--EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE---NVAHFFEVAKAIR 385 (386)
Q Consensus 312 l~--e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E---ni~a~~~a~~~yg 385 (386)
.. +...+.|+-+.+-=| +..|++|+...+..+.+. |...++|.-=|.....++.+ |++++-..-+.++
T Consensus 112 ~~LL~~va~tgkPVilk~G-----~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~ 184 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRG-----LMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTD 184 (250)
T ss_pred HHHHHHHHccCCeEEEeCC-----CCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhC
Confidence 33 322233321111111 257999999999988764 34567887634344445533 5555544433343
No 71
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.01 E-value=4.7 Score=38.02 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--h---HHHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--L---LERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~---l~~l~e~ 299 (386)
.+.++++.+++.|++++++..+.+. .+|.+.+++++. ...+.... ..+++.+.++... - .....+.
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~----~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIE----AVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHH----HHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 3445556677899999998766654 799999888643 33444432 4688889887543 1 3555678
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|.+.+
T Consensus 95 G~d~v~~ 101 (284)
T cd00950 95 GADAALV 101 (284)
T ss_pred CCCEEEE
Confidence 9997654
No 72
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=91.83 E-value=5.2 Score=39.33 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.++.+.+.|+..+. ...+-..=||.-|+.+....++.+.+..++. |.+++-=.+ +...++.+.++ ++++-+...
T Consensus 136 ~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~--Gl~~~t~v~-d~~~~~~l~~~-vd~lkI~s~ 210 (360)
T PRK12595 136 AVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEY--GLAVISEIV-NPADVEVALDY-VDVIQIGAR 210 (360)
T ss_pred HHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHc--CCCEEEeeC-CHHHHHHHHHh-CCeEEECcc
Confidence 334555668887655 2333345677779999999999999998887 566443222 23347888888 898877542
Q ss_pred --CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHH
Q 016596 310 --VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEV 380 (386)
Q Consensus 310 --~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a 380 (386)
.+.. +.+..++. |. |..| ..|.+|+...+..+... |...++|.--|.....+ ..-|++++...
T Consensus 211 ~~~n~~-LL~~~a~~-----gk-PVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 211 NMQNFE-LLKAAGRV-----NK-PVLLKRGLSATIEEFIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred cccCHH-HHHHHHcc-----CC-cEEEeCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 3443 33333321 11 2222 47999999999988765 44568887533221111 11277776655
Q ss_pred HHhhc
Q 016596 381 AKAIR 385 (386)
Q Consensus 381 ~~~yg 385 (386)
-+.|+
T Consensus 283 k~~~~ 287 (360)
T PRK12595 283 KQETH 287 (360)
T ss_pred HHHhC
Confidence 55454
No 73
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.57 E-value=1.4 Score=45.09 Aligned_cols=87 Identities=23% Similarity=0.224 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcch--HHHH--Hhc
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGL--LERL--ALT 299 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~--l~~l--~e~ 299 (386)
.++.+++++.+.++|++.|.|.|..| ++.|....+ ++..+++..+ ++++-+|++.+... ...+ .+.
T Consensus 154 ~e~~~~~a~~l~~~Gad~I~IkDtaG-ll~P~~~~~--------LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieA 224 (499)
T PRK12330 154 VEGFVEQAKRLLDMGADSICIKDMAA-LLKPQPAYD--------IVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEA 224 (499)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcc-CCCHHHHHH--------HHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHc
Confidence 34556677778899999999877654 688877554 4455555432 57899999987653 3444 478
Q ss_pred CCCEEEcC-----C---CCCHHHHHHHhC
Q 016596 300 GVDVVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 300 g~d~l~~d-----~---~~dl~e~~~~~g 320 (386)
|++.++.. . ..+++++...+.
T Consensus 225 Gad~vDtai~Glg~~aGn~atE~vv~~L~ 253 (499)
T PRK12330 225 GVDVVDTAISSMSLGPGHNPTESLVEMLE 253 (499)
T ss_pred CCCEEEeecccccccccchhHHHHHHHHH
Confidence 99988531 1 135555555553
No 74
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=91.47 E-value=10 Score=35.80 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
++.++.+.+.|+..+++...... .+++.+ .++++++.+.+++. +..+.++. |..+ .+..|.+.|++.+++
T Consensus 68 ~~~~~~~~~~g~~~~~l~~~g~~-~~~~~~----~~~~~~i~~~~~~~--~i~~~~~~-g~~~~e~l~~Lk~aG~~~v~i 139 (296)
T TIGR00433 68 LEEARKAKAAGATRFCLVASGRG-PKDREF----MEYVEAMVQIVEEM--GLKTCATL-GLLDPEQAKRLKDAGLDYYNH 139 (296)
T ss_pred HHHHHHHHHCCCCEEEEEEecCC-CChHHH----HHHHHHHHHHHHhC--CCeEEecC-CCCCHHHHHHHHHcCCCEEEE
Confidence 33444455678887765443332 334444 45677777777664 45555544 6554 478999999998755
Q ss_pred C
Q 016596 307 D 307 (386)
Q Consensus 307 d 307 (386)
.
T Consensus 140 ~ 140 (296)
T TIGR00433 140 N 140 (296)
T ss_pred c
Confidence 3
No 75
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.47 E-value=6.4 Score=40.38 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++--+++++.+.++|++.|=++-+. .|++.|+- .+++.+. .....+..++......++...++|++.+
T Consensus 23 ~e~K~~ia~~L~~~Gv~~IE~G~p~---~~~~d~e~-----v~~i~~~----~~~~~i~a~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 23 PEEKLEIARKLDELGVDVIEAGSAI---TSEGEREA-----IKAVTDE----GLNAEICSFARAVKVDIDAALECDVDSV 90 (488)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCc---CCHHHHHH-----HHHHHhc----CCCcEEEeecccCHHHHHHHHhCCcCEE
Confidence 4455677788889999988765443 36666543 2333332 1123333444333234777888888877
Q ss_pred EcC
Q 016596 305 SLD 307 (386)
Q Consensus 305 ~~d 307 (386)
++.
T Consensus 91 ~i~ 93 (488)
T PRK09389 91 HLV 93 (488)
T ss_pred EEE
Confidence 653
No 76
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=91.31 E-value=3.1 Score=41.71 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ecCCcc--h
Q 016596 217 LHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-ASGSGG--L 292 (386)
Q Consensus 217 v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~cG~~~--~ 292 (386)
...+|+++.....+.+..+..+||.-|++-+|.-.+ +..+.- ..+++....+.+...+..+++- .-|+.. .
T Consensus 178 ~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l-----~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a 252 (765)
T KOG2263|consen 178 LLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKL-----QAFKGAYAELESTLSGLNVLLATYFADVPAEA 252 (765)
T ss_pred hHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHH-----HHHHHHHHHHHhhccccceeehhhhccCCHHH
Confidence 357899999999999999999999999987776432 332222 2233333444322112233332 335554 3
Q ss_pred HHHHHhcC-CCEEEcCCC---CCHHHHHHHhCCC-eeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Q 016596 293 LERLALTG-VDVVSLDWT---VDMAEGRRRLGPD-VAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK 366 (386)
Q Consensus 293 l~~l~e~g-~d~l~~d~~---~dl~e~~~~~g~~-~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~ 366 (386)
++.+..++ +.++++|-. -.+..++..+|.+ +.+.|-||-..+ ..+-..-..-+.+++...|..+.+++++|++.
T Consensus 253 ~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlL 332 (765)
T KOG2263|consen 253 YKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLL 332 (765)
T ss_pred HHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhh
Confidence 67787775 888887743 3677788888854 666777787655 44444445566777888887799999999974
No 77
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.18 E-value=5.9 Score=36.19 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ecCCcc--h-HHHHHhc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-ASGSGG--L-LERLALT 299 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~cG~~~--~-l~~l~e~ 299 (386)
-++..+++++.+.++|.+.|-++ -.+.+++.++ ..+++.+.... ..+..+ .|+... . ++.+.+.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~-----~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVG---FPFASEDDFE-----QVRRLREALPN----ARLQALCRANEEDIERAVEAAKEA 79 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEE---HCTSSHHHHH-----HHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc---ccccCHHHHH-----Hhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhc
Confidence 35566777888889999998775 3356776654 34566666654 233333 343322 2 4555679
Q ss_pred CCCEEEcCC-CCC--------------HHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 300 GVDVVSLDW-TVD--------------MAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 300 g~d~l~~d~-~~d--------------l~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
|++.+.+-. ..| +..+ .+..|.++. +..... ..+++++.+.++++.+...+ .+
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~----~~~~~~~~~~~~~~~~~~~~~~~~g~~-~i 154 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA----FGCEDASRTDPEELLELAEALAEAGAD-II 154 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE----EEETTTGGSSHHHHHHHHHHHHHHT-S-EE
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE----eCccccccccHHHHHHHHHHHHHcCCe-EE
Confidence 999886532 222 2222 223444332 222222 67899999888888776423 34
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.|. +...-..|+.+..+++++++
T Consensus 155 ~l~---Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 155 YLA---DTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp EEE---ETTS-S-HHHHHHHHHHHHH
T ss_pred Eee---CccCCcCHHHHHHHHHHHHH
Confidence 442 22233457778888887775
No 78
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.17 E-value=12 Score=34.93 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec------CCcc--hH----HHHHh
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS------GSGG--LL----ERLAL 298 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c------G~~~--~l----~~l~e 298 (386)
.++..++.|++.+.+-+..++ ...+ +++ ...+++.+.++++ |.|++++.. |... .+ ....+
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~---~~~~-~~~-~~~~~i~~~~~~~--g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGS---DTEW-EQI-RDLGMIAEICDDW--GVPLLAMMYPRGPHIDDRDPELVAHAARLGAE 167 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCC---chHH-HHH-HHHHHHHHHHHHc--CCCEEEEEeccCcccccccHHHHHHHHHHHHH
Confidence 345577899999988776543 1222 233 4678888888876 567766321 2211 12 23346
Q ss_pred cCCCEEEcCCCCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+-.....+++.+++.. +-.+...||+.. .|.++..+.+.++++.+.. |..+ |-.+ ..+-|.+.+
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~----~~~~~~~~~i~~~~~aGa~-Gia~--g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKT----NSDREFLQMIKDAMEAGAA-GVAV--GRNIFQHDDPVGIT 240 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCC----CCHHHHHHHHHHHHHcCCc-EEeh--hhHhhcCCCHHHHH
Confidence 899999777666666665544 344666788753 4678888888888887544 3333 3333 234477777
Q ss_pred HHHHHHHHh
Q 016596 375 AHFFEVAKA 383 (386)
Q Consensus 375 ~a~~~a~~~ 383 (386)
+++.+.+++
T Consensus 241 ~~l~~~i~~ 249 (258)
T TIGR01949 241 KAVCKIVHE 249 (258)
T ss_pred HHHHHHHhC
Confidence 777776653
No 79
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.11 E-value=2.5 Score=41.02 Aligned_cols=134 Identities=17% Similarity=0.281 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CEEEEecC-CcCCCC----HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-
Q 016596 218 HALLRKFTTSMAKYVQYQADNGA--QAVQIFDS-WATELS----PVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS- 289 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~--d~i~i~d~-~~~~iS----p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~- 289 (386)
.++.+.+.++....++++.++|+ +.|+|+.- ..+|+- +..|..+ .-.++.-++++++..+++++++|+.+-
T Consensus 102 ~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~-a~ll~ag~~AVr~~~p~~kV~lH~~~~~ 180 (332)
T PF07745_consen 102 DQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNL-AKLLNAGIKAVREVDPNIKVMLHLANGG 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHH-HHHHHHHHHHHHTHSSTSEEEEEES-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHH-HHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 45667788888888889999885 66787743 233444 4555543 346677778888887788999998643
Q ss_pred -c---c-hHHHHHhcC--CCEEEcCCC-----------CCHHHHHHHhCCCeeEE--e------------cCCcC---c-
Q 016596 290 -G---G-LLERLALTG--VDVVSLDWT-----------VDMAEGRRRLGPDVAVQ--G------------NVDPG---A- 333 (386)
Q Consensus 290 -~---~-~l~~l~e~g--~d~l~~d~~-----------~dl~e~~~~~g~~~~l~--G------------~vd~~---~- 333 (386)
. . +++.+...| .|++.+... ..+..+.+++++++.|. | |+-+. .
T Consensus 181 ~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~ 260 (332)
T PF07745_consen 181 DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLIS 260 (332)
T ss_dssp SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGT
T ss_pred chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccC
Confidence 2 2 368888766 567765322 14567788898766552 2 11100 0
Q ss_pred -cCCCHHHHHHHHHHHHHHc
Q 016596 334 -LFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 334 -l~gt~eev~~~v~~~i~~~ 352 (386)
..-||+--++.++++++..
T Consensus 261 ~yp~t~~GQ~~~l~~l~~~v 280 (332)
T PF07745_consen 261 GYPATPQGQADFLRDLINAV 280 (332)
T ss_dssp TS-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 0237887777777777654
No 80
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.91 E-value=1.5 Score=41.65 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+.+.+.++.+.++|+|.|.+.|+.+ .++|....++ +..+++..++.++-+|++.+... + ..+ .+.|+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIG-VGTPGQVRAV--------LEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccC-ccCHHHHHHH--------HHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 3445566677889999999888766 5778776654 33444333346889999988763 3 444 46799
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
+.++.
T Consensus 226 ~~id~ 230 (287)
T PRK05692 226 TVFDA 230 (287)
T ss_pred CEEEE
Confidence 98853
No 81
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=90.88 E-value=2.1 Score=41.71 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHH---HHHhh------HHHHHHHHHHHHhhCCCCcEEEE
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQAVQIFDSW----ATELSPVD---FEEFS------LPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
+-++.+.+...+.++...++|.|+|.+.-.- ..|+||.. =++|. .-+..++++++++.-+.-++.+-
T Consensus 145 ~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vR 224 (338)
T cd02933 145 EEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEE
Confidence 3355666666677778889999999886432 23788722 11222 35667888888875322156766
Q ss_pred ecCC----------c-c----hHHHHHhcCCCEEEcCCC----------C-CHHHHHHHhCCCeeEEecC
Q 016596 286 ASGS----------G-G----LLERLALTGVDVVSLDWT----------V-DMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 286 ~cG~----------~-~----~l~~l~e~g~d~l~~d~~----------~-dl~e~~~~~g~~~~l~G~v 329 (386)
+.+. . . +...+.+.|+|.+++... . ...++|+.++-.+...|++
T Consensus 225 is~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 225 LSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred ECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC
Confidence 6432 1 1 235666789999987321 1 1356677776556666766
No 82
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=90.85 E-value=18 Score=35.71 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e 237 (386)
+|+..+.+++++..++.|+..++++++.++.. . +++.++...+
T Consensus 179 ER~~~v~~av~~a~~~TG~~~~y~~nit~~~~---e----------------------------------~i~~a~~a~~ 221 (367)
T cd08205 179 ERVRACMEAVRRANEETGRKTLYAPNITGDPD---E----------------------------------LRRRADRAVE 221 (367)
T ss_pred HHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH---H----------------------------------HHHHHHHHHH
Confidence 35677788899999998887777777765521 1 1233445667
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-----------cc-hHHHHHh-cCCCEE
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-----------GG-LLERLAL-TGVDVV 304 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-----------~~-~l~~l~e-~g~d~l 304 (386)
+|+|++++.-++.++-+.+ ++.+.. +.|+..|-.+. .. .+-.+.. .|+|++
T Consensus 222 ~Gad~vmv~~~~~g~~~~~-----------~l~~~~-----~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~ 285 (367)
T cd08205 222 AGANALLINPNLVGLDALR-----------ALAEDP-----DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAV 285 (367)
T ss_pred cCCCEEEEecccccccHHH-----------HHHhcC-----CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCcc
Confidence 8999998765554443322 222211 46777777661 11 2444444 689988
Q ss_pred EcCCC-----CCHHHHHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCCCcHHH
Q 016596 305 SLDWT-----VDMAEGRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVGTPEEN 373 (386)
Q Consensus 305 ~~d~~-----~dl~e~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~tp~En 373 (386)
+..+. .+.++..+....-..=++++.+..- . .++ ..+.++++.++ ..+++..|-++ -|+-+.+.
T Consensus 286 ~~~~~~gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~----~~v~~l~~~~G-~dv~~~~GGgi~gHp~g~~ag 360 (367)
T cd08205 286 IFPGPGGRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHP----GRVPELYRDYG-PDVILLAGGGILGHPDGAAAG 360 (367)
T ss_pred ccCCCccCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCH----HHHHHHHHHhC-CcEEEEcCchhcCCCCChHHH
Confidence 65432 2333333322100011456666542 2 334 45566677775 45888888887 47788888
Q ss_pred HHHHHHH
Q 016596 374 VAHFFEV 380 (386)
Q Consensus 374 i~a~~~a 380 (386)
.+||.++
T Consensus 361 ~~a~r~a 367 (367)
T cd08205 361 VRAFRQA 367 (367)
T ss_pred HHHHhcC
Confidence 9888763
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=7.6 Score=37.36 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC------cc--hHHHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS------GG--LLERLA 297 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~------~~--~l~~l~ 297 (386)
+-.+.|++.+.+.|...||. +++.|+..++..+-.+++++..+++. |..+++-+.+. +. .++.+.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFt-----sl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~ 88 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFT-----SLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQ 88 (360)
T ss_pred hhHHHHHHHHHHcCccceee-----ecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHH
Confidence 34567888899999888874 46778888889999999999999998 57888887764 33 378899
Q ss_pred hcCCCEEEcCCCCCHHHHHHHhCCCeeE
Q 016596 298 LTGVDVVSLDWTVDMAEGRRRLGPDVAV 325 (386)
Q Consensus 298 e~g~d~l~~d~~~dl~e~~~~~g~~~~l 325 (386)
+.|++++-+|...+.++..+.....+.+
T Consensus 89 e~G~~glRlD~gfS~eei~~ms~~~lki 116 (360)
T COG3589 89 ELGVDGLRLDYGFSGEEIAEMSKNPLKI 116 (360)
T ss_pred HhhhhheeecccCCHHHHHHHhcCCeEE
Confidence 9999999999988888887765442333
No 84
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.80 E-value=9 Score=36.38 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHH-hCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-h---HHHHHhcC
Q 016596 229 AKYVQYQAD-NGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-L---LERLALTG 300 (386)
Q Consensus 229 ~~~~~~~~e-~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~---l~~l~e~g 300 (386)
.++++.+++ .|+++|++..+.+. .||.+..++++ +..++.+.+ .++++.++..+ +. - .....+.|
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~----~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~~~G 99 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVL----EIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYATELG 99 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHH----HHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHHHcC
Confidence 344556777 99999998877764 79998887763 344555543 46888888543 32 2 25556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 100 ad~v~v 105 (293)
T PRK04147 100 YDAISA 105 (293)
T ss_pred CCEEEE
Confidence 998754
No 85
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.75 E-value=10 Score=36.18 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHH-hcCCCEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLA-LTGVDVV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~-e~g~d~l 304 (386)
+.++...++|+|++.+.-|+....|+ +-+.-|++++.+.. +.|++++.+.... .+..+. +.+ +++
T Consensus 92 ~~~~~a~~~Gadav~~~pP~y~~~~~----~~i~~~f~~va~~~-----~lpi~lYn~~g~~l~~~~l~~L~~~~p-ni~ 161 (303)
T PRK03620 92 EYAQAAERAGADGILLLPPYLTEAPQ----EGLAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAERCP-NLV 161 (303)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEcCCCCCCCHHHHHHHHhhCC-CEE
Confidence 45556678899999887776444454 44556777887765 3576665544322 245555 554 566
Q ss_pred Ec-CCCCCHHH---HHHHhCCCeeEEecCC
Q 016596 305 SL-DWTVDMAE---GRRRLGPDVAVQGNVD 330 (386)
Q Consensus 305 ~~-d~~~dl~e---~~~~~g~~~~l~G~vd 330 (386)
.+ +...|+.. +.+.++++..++.|.|
T Consensus 162 giK~s~~d~~~~~~~~~~~~~~f~vl~G~d 191 (303)
T PRK03620 162 GFKDGVGDIELMQRIVRALGDRLLYLGGLP 191 (303)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEEeCCC
Confidence 55 34456654 4445566666665553
No 86
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.53 E-value=12 Score=35.55 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhC-CCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHh
Q 016596 227 SMAKYVQYQADNG-AQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLAL 298 (386)
Q Consensus 227 ~~~~~~~~~~e~G-~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e 298 (386)
.+.++++.+++.| +++|++..+.+. .+|.+..++++ +..++...+ .+|++.|+.+..+ -+ ....+
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIF----RIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHH
Confidence 3445556678899 999998877764 78999888864 344444433 4688888754432 13 44467
Q ss_pred cCCCEEEc
Q 016596 299 TGVDVVSL 306 (386)
Q Consensus 299 ~g~d~l~~ 306 (386)
+|+|++.+
T Consensus 95 ~Gad~v~v 102 (290)
T TIGR00683 95 LGYDCLSA 102 (290)
T ss_pred hCCCEEEE
Confidence 88887754
No 87
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.17 E-value=6.2 Score=37.89 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=61.6
Q ss_pred hCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhh
Q 016596 212 SQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQT 276 (386)
Q Consensus 212 ~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~ 276 (386)
..||.+.+.++.+... ..+.++.+++.|++.|.+. . + .| .++++.+|+.
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~--~-g--~p-----------~~~i~~lk~~ 108 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG--A-G--NP-----------GKYIPRLKEN 108 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc--C-C--Cc-----------HHHHHHHHHc
Confidence 3566666666655431 1345566678899987652 1 1 22 1467777876
Q ss_pred CCCCcEEEEecCCcchHHHHHhcCCCEEEcCC-----C----CC---HHHHHHHhCCCeeEEecCC
Q 016596 277 HPDLSLILYASGSGGLLERLALTGVDVVSLDW-----T----VD---MAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 277 ~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~-----~----~d---l~e~~~~~g~~~~l~G~vd 330 (386)
|+. +++.+++........+.|+|++.+.. . .+ +.++++.++-.+...|||.
T Consensus 109 --g~~-v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~ 171 (307)
T TIGR03151 109 --GVK-VIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA 171 (307)
T ss_pred --CCE-EEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC
Confidence 454 56888887666778889999886521 1 13 3455555554566778874
No 88
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.16 E-value=2.1 Score=43.36 Aligned_cols=73 Identities=23% Similarity=0.298 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--Hhc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALT 299 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~ 299 (386)
-.++..+.++.+.++|++.|.+.|..| ++.|....++ +.++++.. ++++-+|++.+... + ..+ .+.
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG-~l~P~~v~~L--------v~alk~~~-~~pi~~H~Hnt~GlA~An~laAieA 230 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAG-ILTPKAAKEL--------VSGIKAMT-NLPLIVHTHATSGISQMTYLAAVEA 230 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHHH--------HHHHHhcc-CCeEEEEeCCCCccHHHHHHHHHHc
Confidence 345566677778899999999877654 6888775554 44444432 57899999987653 2 333 478
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|++.++.
T Consensus 231 Gad~vD~ 237 (468)
T PRK12581 231 GADRIDT 237 (468)
T ss_pred CCCEEEe
Confidence 9998853
No 89
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.11 E-value=2 Score=43.64 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++.++.++.+.++|+|.|.+.|..| ++.|....+ ++..+++.. ++|+-+|++.+... ...+ .+.|+
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAG-LLTPKRAYE--------LVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccC-CcCHHHHHH--------HHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 4455666678889999999877665 577876554 455555544 47899999987653 3444 47899
Q ss_pred CEEEcC-----C---CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH
Q 016596 302 DVVSLD-----W---TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK 351 (386)
Q Consensus 302 d~l~~d-----~---~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~ 351 (386)
++++.. . ..+++++...+.. .++++..=...-.++.++++++-+.
T Consensus 223 d~vD~sv~~~g~gagN~atE~lv~~L~~-----~g~~tgiDl~~L~~~~~~~~~vr~~ 275 (467)
T PRK14041 223 DMFDTAISPFSMGTSQPPFESMYYAFRE-----NGKETDFDRKALKFLVEYFTKVREK 275 (467)
T ss_pred CEEEeeccccCCCCCChhHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 988531 1 2456666655532 1344421022233445555554443
No 90
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.07 E-value=14 Score=35.02 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHh-CCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hH---HHHHhc
Q 016596 228 MAKYVQYQADN-GAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LL---ERLALT 299 (386)
Q Consensus 228 ~~~~~~~~~e~-G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l---~~l~e~ 299 (386)
+.++++.+++. |++++++..+.+. .+|.+..++++ +..++...+ .++++.++.+. +. .+ ....+.
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~----~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIA----EIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 34455567778 9999998877764 78988887764 344444432 46888887543 32 22 455678
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|++.+
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9987743
No 91
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.07 E-value=15 Score=37.39 Aligned_cols=202 Identities=17% Similarity=0.113 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhCCceeEE--eecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHH---HHHHHHHH----HHHHHHHHHHH
Q 016596 164 GKALTILREEVNNEAAVL--GFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK---VLHALLRK----FTTSMAKYVQY 234 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~--~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe---~v~~ll~~----~~~~~~~~~~~ 234 (386)
++...+|...+++++.++ .++..|-++.. +..+ .+.+. +=..+++.|+ .+++++.. |.=...+-++.
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~-~~~~--~davL-iG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~ 272 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRE-LSPF--ANGFL-IGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKA 272 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHH-HHhc--CCEEE-ECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHH
Confidence 455566667776665544 35667765443 3331 11121 1124444443 34444322 33333455677
Q ss_pred HHHhCCCEEEE-ec-CCcCCCCHHHHHHhhH------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHh
Q 016596 235 QADNGAQAVQI-FD-SWATELSPVDFEEFSL------------PYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLAL 298 (386)
Q Consensus 235 ~~e~G~d~i~i-~d-~~~~~iSp~~f~ef~~------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e 298 (386)
..++|+|.+-+ +. .+.-.+++++.++... +....+.+.+++.+ +-++..+|+.. .+..+.+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~---lD~vQLHG~e~~~~~~~l~~ 349 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLS---LAAVQLHGDEDQAYIDALRE 349 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcC---CCEEEeCCCCCHHHHHHHHh
Confidence 78899998743 43 3445899999987763 33345556666542 34677788754 3455543
Q ss_pred c---C--------------------CCEEEcCC-------CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHH
Q 016596 299 T---G--------------------VDVVSLDW-------TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDT 348 (386)
Q Consensus 299 ~---g--------------------~d~l~~d~-------~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~ 348 (386)
. + +|.+-+|. ..|...+.......+.|.||+ +||.|.+..
T Consensus 350 ~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~~~~~~p~iLAGGL-------~peNV~~ai--- 419 (454)
T PRK09427 350 ALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLPGQSLDNVLLAGGL-------NPDNCQQAA--- 419 (454)
T ss_pred hcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhhhcccCCEEEECCC-------CHHHHHHHH---
Confidence 1 1 22222221 013333322222234555555 456666653
Q ss_pred HHHcCCCCeEEecCCCCCCC-CcHHHHHHHHHHHHhh
Q 016596 349 VRKAGRWKHILNLGHGIKVG-TPEENVAHFFEVAKAI 384 (386)
Q Consensus 349 i~~~~~~g~Ils~gc~i~~~-tp~Eni~a~~~a~~~y 384 (386)
..+..|.=+++|-+..|+ -.++.+++++++++.|
T Consensus 420 --~~~P~gVDVsSGVE~~pG~KD~~Ki~~Fi~~vr~~ 454 (454)
T PRK09427 420 --QLGCAGLDFNSGVESAPGIKDAQKLASVFQTLRAY 454 (454)
T ss_pred --hcCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhhC
Confidence 234457778888887655 5899999999999976
No 92
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.04 E-value=1.9 Score=43.67 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
+..+.++.+.++|+|.|.+.|..| ++.|....+ ++.++++.. +.|+-+|++-+... + ..+ .+.|++
T Consensus 155 ~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad 224 (448)
T PRK12331 155 YFVKLAKEMQEMGADSICIKDMAG-ILTPYVAYE--------LVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGAD 224 (448)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 345566667789999999877655 678877554 555666554 47899999887653 3 444 478999
Q ss_pred EEEcC-----C---CCCHHHHHHHhC
Q 016596 303 VVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 303 ~l~~d-----~---~~dl~e~~~~~g 320 (386)
+++.. . ..+++++...+.
T Consensus 225 ~vD~sv~glg~gaGN~~tE~lv~~L~ 250 (448)
T PRK12331 225 IIDTAISPFAGGTSQPATESMVAALQ 250 (448)
T ss_pred EEEeeccccCCCcCCHhHHHHHHHHH
Confidence 88542 1 135566555553
No 93
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=89.98 E-value=15 Score=33.63 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~ 294 (386)
++.+.|...+-++++.+.|+|++.+-. |+..-++|+. .-++-.+++.+.+.- ++|+-+-.--|.. -+.
T Consensus 29 ~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-----vaaMa~iv~~v~r~v-~iPvGvNVLrNd~vaA~~ 102 (263)
T COG0434 29 LEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPET-----VAAMAVIVREVVREV-SIPVGVNVLRNDAVAALA 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-----HHHHHHHHHHHHHhc-cccceeeeeccccHHHHH
Confidence 555666677778889999999988632 2323444443 334556666665542 5777666554433 244
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc-c-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA-L-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~-l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
.-...|.+-+-+ |+. -.+.+.+.+++.++-+.-+++..- . .+++ .+.+.++.+++.+...+.
T Consensus 103 IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDaV 181 (263)
T COG0434 103 IAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEAVKDTVERGLADAV 181 (263)
T ss_pred HHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHHHHHHHHccCCCEE
Confidence 444557665532 111 134566788998899999998863 3 4544 778888888888775566
Q ss_pred EEecCCCCCCCCcHHHHHHHHHH
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
|++ |...-..+.+|.++..-++
T Consensus 182 I~t-G~~TG~~~d~~el~~a~~~ 203 (263)
T COG0434 182 IVT-GSRTGSPPDLEELKLAKEA 203 (263)
T ss_pred EEe-cccCCCCCCHHHHHHHHhc
Confidence 665 4444444455555544443
No 94
>PRK08227 autoinducer 2 aldolase; Validated
Probab=89.78 E-value=16 Score=34.25 Aligned_cols=137 Identities=13% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE-EecCCcc-h-HH-------HHHhcCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL-YASGSGG-L-LE-------RLALTGV 301 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~-H~cG~~~-~-l~-------~l~e~g~ 301 (386)
++..++.|||++.+.--++ |+ +|.-..-.+-++.+.++++ |.|++. +--|... . .+ .-.|+|+
T Consensus 100 VeeAvrlGAdAV~~~v~~G---s~--~E~~~l~~l~~v~~ea~~~--G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIG---SE--YEHQSIKNIIQLVDAGLRY--GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEEEecC---CH--HHHHHHHHHHHHHHHHHHh--CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 3447789999987755555 32 3333444577899999997 678766 4445321 1 12 2248899
Q ss_pred CEEEcCCCC-CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-CCCcHHHHHHHHH
Q 016596 302 DVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK-VGTPEENVAHFFE 379 (386)
Q Consensus 302 d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~~tp~Eni~a~~~ 379 (386)
|++-..+.. +++++.+..+-.+.+.||= ..|.+|+-+.+++.++.++ .|.. .|=++- .+-|.+-++|+..
T Consensus 173 DiVK~~y~~~~f~~vv~a~~vPVviaGG~-----k~~~~~~L~~v~~ai~aGa-~Gv~--~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 173 QIIKTYYVEEGFERITAGCPVPIVIAGGK-----KLPERDALEMCYQAIDEGA-SGVD--MGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CEEecCCCHHHHHHHHHcCCCcEEEeCCC-----CCCHHHHHHHHHHHHHcCC-ceee--echhhhccCCHHHHHHHHHH
Confidence 999877653 4566666444445556653 2367889999999999553 3333 355553 3456666666665
Q ss_pred HHHh
Q 016596 380 VAKA 383 (386)
Q Consensus 380 a~~~ 383 (386)
.+|+
T Consensus 245 IVh~ 248 (264)
T PRK08227 245 VVHE 248 (264)
T ss_pred HHhC
Confidence 5553
No 95
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=89.69 E-value=9 Score=36.92 Aligned_cols=152 Identities=17% Similarity=0.252 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 214 PKVLHALLRKFTTSMAKYVQYQA-DNGAQAVQIFDSWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 214 Pe~v~~ll~~~~~~~~~~~~~~~-e~G~d~i~i~d~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
|+.+++-++.+.+--.++++.+. +.|+|.|.+...+++ --+++.|.+ ..+++.+.+ +.|+++-+||
T Consensus 63 ~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~----~Vk~V~eav-----d~PL~Id~s~ 133 (319)
T PRK04452 63 PEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAK----TVEEVLQAV-----DVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHH----HHHHHHHhC-----CCCEEEecCC
Confidence 44666666666555577788887 799999998743332 234554444 333444443 5798899999
Q ss_pred Cc----chHHHHHh-cC-CC-EEE-cC--CCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--CCC
Q 016596 289 SG----GLLERLAL-TG-VD-VVS-LD--WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWK 356 (386)
Q Consensus 289 ~~----~~l~~l~e-~g-~d-~l~-~d--~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~~g 356 (386)
|. ..++.-++ ++ -. +++ .. ..-.+..+.+.+|..+...+-.| . ++.++.-+.+...| ...
T Consensus 134 n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D-------l-n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 134 NPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD-------I-NLAKQLNILLTELGVPRER 205 (319)
T ss_pred CCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH-------H-HHHHHHHHHHHHcCCCHHH
Confidence 63 34554444 32 22 443 22 22245666777776444443222 1 23333334444555 367
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++-|+.. +-++..|.....++++|.
T Consensus 206 IviDP~~~-~lg~g~e~~~~~~e~IR~ 231 (319)
T PRK04452 206 IVMDPTTG-ALGYGIEYSYSVMERIRL 231 (319)
T ss_pred EEEeCCcc-cccCCHHHHHHHHHHHHH
Confidence 89998863 456666666666666554
No 96
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=89.62 E-value=3 Score=39.52 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++.++++.+.++|++.|.++|+.+ .++|....+ +++.+++..++.++-+|++-+... + ..+ .+.|++
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~--------l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLG-ILSPFETYT--------YISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CCCHHHHHH--------HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 445556667788999999988776 577776544 344444433456888999988753 3 333 467998
Q ss_pred EEE
Q 016596 303 VVS 305 (386)
Q Consensus 303 ~l~ 305 (386)
.++
T Consensus 219 ~vd 221 (280)
T cd07945 219 GLH 221 (280)
T ss_pred EEE
Confidence 875
No 97
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=89.60 E-value=18 Score=34.42 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .||.+...+++. ..++.+.+ .+|++.|..++.+ -+ ....+.|+|
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~----~~~~~~~g---~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIE----NAIDQIAG---RIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHH----HHHHHhCC---CCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 4455567899999998877764 788888777654 34444442 4788888887653 23 445678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 98 ~v~v 101 (294)
T TIGR02313 98 AAMV 101 (294)
T ss_pred EEEE
Confidence 8754
No 98
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=89.51 E-value=2.4 Score=39.99 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.++++.+.+.|++.|.+.|+.+ .+.|..+.+++ ..+++..++.++.+|++.+..+ + ..+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIG-VATPAQVRRLL--------EAVLERFPDEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-ccCHHHHHHHH--------HHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3444555666778999999888776 47787766653 3444433357899999988753 3 333 46798
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 220 ~~id 223 (274)
T cd07938 220 RRFD 223 (274)
T ss_pred CEEE
Confidence 8875
No 99
>PRK06438 hypothetical protein; Provisional
Probab=89.43 E-value=3.5 Score=39.00 Aligned_cols=157 Identities=9% Similarity=0.084 Sum_probs=95.7
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVD 257 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~ 257 (386)
..+-+.+.||+|++-.-.. + -|.+++ ++++.+++++.+.++++- ++.+++.+++- +++..
T Consensus 126 ~~lkavLPGPyT~a~lS~n----e--------~Y~d~~---e~~~aia~~l~~e~~al~---v~~v~l~EPsl--~~~~~ 185 (292)
T PRK06438 126 KGISIFLPSPYSFYKMSKT----L--------EKIDYN---DFYKKLVNIYSRILDIFS---IKNVVLLDVFY--YKNDN 185 (292)
T ss_pred CCceEEecCchhHHHhhcc----c--------ccCCHH---HHHHHHHHHHHHHHHhCC---cceEEEecchh--cCCCc
Confidence 3456678899998755432 1 244544 667777777777666544 88899888652 12111
Q ss_pred HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc-
Q 016596 258 FEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL- 334 (386)
Q Consensus 258 f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l- 334 (386)
....+.+.+ +..+++|+-+... .++.+. +++|.+ + ....+..+.+..+ . .-.|-+|....
T Consensus 186 ---------~~~~e~~~e---~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v-~~~~l~~v~ey~~-~-v~lGivdarnTk 248 (292)
T PRK06438 186 ---------YSYLSDLAK---KYNVILITSGNVSKLNFNGLG-HKFESI-V-RDDEVDYIINKCS-Y-PGIKIFSGDNTK 248 (292)
T ss_pred ---------hhhhhhccc---cccEEEEEecCCchhhHHhhc-ccceeE-e-ccchhhhHHhhcC-C-ceeeeeecCccc
Confidence 111222211 1356778887765 378888 999998 4 4445666666633 3 55688888764
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHH
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFF 378 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~ 378 (386)
..++|+ ++.+ -+-...++++.+.+ |...-.+.++++-
T Consensus 249 mE~~e~-~~~i------~~~~~v~vt~nt~ldfLP~~~a~~Kl~lL~ 288 (292)
T PRK06438 249 MEDLKA-RKEI------SGYDNVLLTHSDYMDFLPREIADIKVELLG 288 (292)
T ss_pred ccCHHH-hhhc------cCcceEEEcCCchhhhccHHHHHHHHHHHH
Confidence 788888 7776 22457888888764 3334444444443
No 100
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=89.36 E-value=20 Score=34.77 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHHHHHHH-hCCCEEEEecCCcC---C---------------CCHHHHHHhh-----------HHHHHHHHHHHHhhCCC
Q 016596 230 KYVQYQAD-NGAQAVQIFDSWAT---E---------------LSPVDFEEFS-----------LPYLKQIVDTVKQTHPD 279 (386)
Q Consensus 230 ~~~~~~~e-~G~d~i~i~d~~~~---~---------------iSp~~f~ef~-----------~P~~k~l~~~i~~~~~~ 279 (386)
+.++.+++ -.++.+.+.|+..+ + +|++.|++++ .+..+++++..+++ |
T Consensus 99 ~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~--g 176 (325)
T cd01306 99 PELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARAR--G 176 (325)
T ss_pred HHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHC--C
Confidence 33344444 35888888886542 3 5555555443 46778889999987 6
Q ss_pred CcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccC-CCHHHHHHHHHHHHHHcCCCCeE
Q 016596 280 LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALF-GSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 280 ~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~-gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.++..|.+.....++...+.|+.+.. ...+.+.++..-...+.+.-+. |..+. ++... ...++++++. |-..+
T Consensus 177 l~vasH~d~~~~~v~~a~~~Gv~~~E--~p~t~e~a~~a~~~G~~vv~ga-pn~lrg~s~~g-~~~~~~ll~~--Gv~~a 250 (325)
T cd01306 177 IPLASHDDDTPEHVAEAHELGVVISE--FPTTLEAAKAARELGLQTLMGA-PNVVRGGSHSG-NVSARELAAH--GLLDI 250 (325)
T ss_pred CcEEEecCCChHHHHHHHHCCCeecc--CCCCHHHHHHHHHCCCEEEecC-cccccCccccc-cHhHHHHHHC--CCeEE
Confidence 89889987655567888888988764 4456655555443333333233 33332 22111 1224455553 23467
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|++++. |...+.+++..+..
T Consensus 251 l~SD~~-----p~sll~~~~~la~~ 270 (325)
T cd01306 251 LSSDYV-----PASLLHAAFRLADL 270 (325)
T ss_pred EEcCCC-----cHhHHHHHHHHHHH
Confidence 888774 22344444444443
No 101
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=89.31 E-value=5.6 Score=38.11 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
+.+-|||.+.+.++++.++--+ |... -.|..+. | +..|++-+++++++++-+.--+.+.+.|
T Consensus 138 dy~Vd~eyLl~w~~kVa~~Kgk--------glEa--HlDGqGE---P-----~lYP~l~~lVqalk~~~~v~vVSmQTng 199 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFKGK--------GLEA--HLDGQGE---P-----LLYPHLVDLVQALKEHKGVEVVSMQTNG 199 (414)
T ss_pred ceEecHHHHHHHHHHHHhhhCC--------CeEE--EecCCCC---C-----ccchhHHHHHHHHhcCCCceEEEEeeCc
Confidence 4567899888888887764321 2221 1243332 2 4568999999999997422235566777
Q ss_pred Cc-c--hHHHHHhcCCCEEEcC-CCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 289 SG-G--LLERLALTGVDVVSLD-WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 289 ~~-~--~l~~l~e~g~d~l~~d-~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
.. + .++.+.++|.|-+++. ...|.+.||...|-+ .-+.+.|.+-++-++. . +=..+++| -
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~------------dYdv~kvle~aE~i~~-a-~idvlIaP--v 263 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRK------------DYDVKKVLEVAEYIAN-A-GIDVLIAP--V 263 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCcc------------ccCHHHHHHHHHHHHh-C-CCCEEEee--e
Confidence 54 2 4699999999988764 347888888876532 1233444444333333 2 33566665 3
Q ss_pred CCCCCcHHHHHHHHHHHHhhc
Q 016596 365 IKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~yg 385 (386)
+.|+...+.+.++++.|++-|
T Consensus 264 ~lPG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred ecCCcChHHHHHHHHHHHHhC
Confidence 567888899999999998865
No 102
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.20 E-value=2.4 Score=38.79 Aligned_cols=69 Identities=25% Similarity=0.400 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l 304 (386)
.++++.+.++|++.|.+.|+.+. ++|....+ ++..+++..++.++-+|.+.+... + ..+ .+.|++.+
T Consensus 140 ~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~v~~--------lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLADTVGI-MTPEDVAE--------LVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRI 210 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEETTS--S-HHHHHH--------HHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHcCCeEEEeeCccCC-cCHHHHHH--------HHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEE
Confidence 34455566779999999887764 67776544 455555554446899999988763 3 333 46899988
Q ss_pred Ec
Q 016596 305 SL 306 (386)
Q Consensus 305 ~~ 306 (386)
+.
T Consensus 211 d~ 212 (237)
T PF00682_consen 211 DG 212 (237)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 103
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=89.14 E-value=17 Score=32.81 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=86.4
Q ss_pred HHHHHHhCCCEEEEecCC----cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE-c
Q 016596 232 VQYQADNGAQAVQIFDSW----ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS-L 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~-~ 306 (386)
++.++++||++|-+.-.+ +..+|++.=.+.+.|.++.+.+... ++|+.+-+. +...++.-.+.|+++++ .
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~----~~plSIDT~-~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENP----DVPLSIDTF-NPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHT----TSEEEEEES-SHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCC----CeEEEEECC-CHHHHHHHHHcCcceEEec
Confidence 788999999999887432 3578887766777777777776221 466655542 22245666666999884 3
Q ss_pred CC---CCCHHHHHHHhCCCeeEEecCC-cCccCCC-------HHHHHHHHHHHHHH---cC--CCCeEEecCCCCCCCCc
Q 016596 307 DW---TVDMAEGRRRLGPDVAVQGNVD-PGALFGS-------KDFITNRINDTVRK---AG--RWKHILNLGHGIKVGTP 370 (386)
Q Consensus 307 d~---~~dl~e~~~~~g~~~~l~G~vd-~~~l~gt-------~eev~~~v~~~i~~---~~--~~g~Ils~gc~i~~~tp 370 (386)
.. ...+..+.++++-.+++|=.-. |..+..+ .+++.++.++-++. .| ....|+-||-+. ..++
T Consensus 100 ~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~~~~ 178 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF-GKDP 178 (210)
T ss_dssp TTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-STTH
T ss_pred ccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-CCCH
Confidence 32 3457777888887766654331 3333222 34444444443332 45 468999999776 4444
Q ss_pred HHHHHHHHHHHHh
Q 016596 371 EENVAHFFEVAKA 383 (386)
Q Consensus 371 ~Eni~a~~~a~~~ 383 (386)
..|+ .+++..+.
T Consensus 179 ~~~~-~~l~~i~~ 190 (210)
T PF00809_consen 179 EQNL-ELLRNIEE 190 (210)
T ss_dssp HHHH-HHHHTHHH
T ss_pred HHHH-HHHHHHHH
Confidence 4544 44444443
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.02 E-value=2.6 Score=44.13 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++..++++.+.++|++.|.|.|.. +++.|....++ +.++++.. +.|+-+|++.+... + ..+ .+.|+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDta-G~l~P~~v~~l--------v~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMA-GLLTPTVTVEL--------YAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGC 223 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcc-cCCCHHHHHHH--------HHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCC
Confidence 445566677888999999987655 46888775554 44445443 47899999987652 2 333 57899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
++++.
T Consensus 224 d~iD~ 228 (596)
T PRK14042 224 NHIDT 228 (596)
T ss_pred CEEEe
Confidence 98853
No 105
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.80 E-value=17 Score=34.29 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-...++ +-+..|++++.+.. +.|++++.. |.. + .+..+.+.+
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~----~~l~~~~~~ia~~~-----~~pi~lYn~P~~~g~~ls~~~~~~L~~~p- 154 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQ----EGLYAHFKAIAEAT-----DLPVILYNVPGRTGVNIEPETVLRLAEHP- 154 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCH----HHHHHHHHHHHhcC-----CCCEEEEEChhHhCCCCCHHHHHHHhcCC-
Confidence 566667778899998876654322333 34567888888864 457777753 332 1 245555553
Q ss_pred CEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+ .++.+.+++++.++.+-|.
T Consensus 155 ~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~ 188 (284)
T cd00950 155 NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA 188 (284)
T ss_pred CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH
Confidence 45444 222343 4455556666666665554
No 106
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.72 E-value=19 Score=33.68 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHH----HhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFE----EFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---- 291 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~----ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---- 291 (386)
+..++.++.+.+.|+|.+=++ ||.+. .|-...-+ .+-.+..-++++.+++.+.++|+++..+-|..
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 344566677889999987665 55542 11111111 22345566778888866557899999988752
Q ss_pred ---hHHHHHhcCCCEEEc-CCC----CCHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 292 ---LLERLALTGVDVVSL-DWT----VDMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 292 ---~l~~l~e~g~d~l~~-d~~----~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
++....+.|+|.+-+ |-. .++.+..++. |+++..| -.|+++-. +++.+.. .|||---
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~--------gi~~I~lvaPtt~~~rl---~~i~~~a--~GFiY~v 177 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH--------GIDPIFLVAPTTPDERL---KKIAEAA--SGFIYYV 177 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc--------CCcEEEEeCCCCCHHHH---HHHHHhC--CCcEEEE
Confidence 234567889998744 422 2344444433 4666655 34454332 3333333 3555544
Q ss_pred CC-CC---CCCCcHHHHHHHHHHHHhh
Q 016596 362 GH-GI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 362 gc-~i---~~~tp~Eni~a~~~a~~~y 384 (386)
++ ++ ....... +..+++.+|+|
T Consensus 178 s~~GvTG~~~~~~~~-~~~~v~~vr~~ 203 (265)
T COG0159 178 SRMGVTGARNPVSAD-VKELVKRVRKY 203 (265)
T ss_pred ecccccCCCcccchh-HHHHHHHHHHh
Confidence 44 22 2222222 78888888876
No 107
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=88.70 E-value=21 Score=36.71 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCe-EEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 335 FGSKDFITNRINDTVRKAGRWKH-ILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~-Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
..|.+++.+.+.+.++.+...|+ .+..+|.-...+++|-+..+++++.++|
T Consensus 201 ~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 201 KKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC
Confidence 35667777777777666653333 3455665555667777777776666654
No 108
>PLN02417 dihydrodipicolinate synthase
Probab=88.67 E-value=17 Score=34.28 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|+++|++..+.+. .+|.+..++.+ +..++.+.+ .+|++.++.++.+ -+ ....+.|
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGG---KIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHH----HHHHHHhCC---CCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 344555677899999998887764 79988887754 334444432 4788888876543 23 4456789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 97 adav~~ 102 (280)
T PLN02417 97 MHAALH 102 (280)
T ss_pred CCEEEE
Confidence 997754
No 109
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=88.66 E-value=8.5 Score=37.39 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=80.4
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec--CCc-c--h-----HHH------
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS--GSG-G--L-----LER------ 295 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c--G~~-~--~-----l~~------ 295 (386)
++..++.|||++.+.--++ |+ ++.-...-+.++++.+++. |.|++..+- |.. . . .+.
T Consensus 152 VedAlrLGAdAV~~tvy~G---s~--~E~~ml~~l~~i~~ea~~~--GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaR 224 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFG---SE--ESRRQIEEISEAFEEAHEL--GLATVLWSYLRNSAFKKDGDYHTAADLTGQANH 224 (348)
T ss_pred HHHHHHCCCCEEEEEEecC---CH--HHHHHHHHHHHHHHHHHHh--CCCEEEEecccCcccCCcccccccHHHHHHHHH
Confidence 4457789999987655455 32 2223344467899999997 689887543 431 0 0 122
Q ss_pred -HHhcCCCEEEcCCCCCHHHHHHH-------------------------hCCCeeEEecCCcCcc---CCCHHHHHHHHH
Q 016596 296 -LALTGVDVVSLDWTVDMAEGRRR-------------------------LGPDVAVQGNVDPGAL---FGSKDFITNRIN 346 (386)
Q Consensus 296 -l~e~g~d~l~~d~~~dl~e~~~~-------------------------~g~~~~l~G~vd~~~l---~gt~eev~~~v~ 346 (386)
-.++|+|++-+....|....++. .. -|+.|.++-..- ..+.+++-++++
T Consensus 225 iaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~--ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 225 LAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVA--NCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHH--hhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 24789999977665444333332 22 133444422111 236788999999
Q ss_pred HH---HHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 347 DT---VRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 347 ~~---i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
.+ ++.+ ..|.++ |=++-..-.+|.+ +|.+++.
T Consensus 303 ~a~~~i~aG-a~Gv~i--GRNIfQ~~~~ea~-~~~~~i~ 337 (348)
T PRK09250 303 TAVINKRAG-GMGLII--GRKAFQRPMAEGV-KLLNAIQ 337 (348)
T ss_pred HHHHhhhcC-Ccchhh--chhhhcCCcHHHH-HHHHHHH
Confidence 99 7743 335444 5666666677776 5555443
No 110
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=88.62 E-value=20 Score=34.70 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCC------c-CCCC---------HHHHHHh--hHHHHHHHHHHHHhhCCCCcEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSW------A-TELS---------PVDFEEF--SLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~------~-~~iS---------p~~f~ef--~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
+..++.+++..++|||.|=+= |.. . .+.+ -++|+++ -+..++++.+..++. |+. +
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~ 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK--GIE-F 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh--CCc-E
Confidence 344555666778999986431 111 0 1111 1345444 356788999999987 444 2
Q ss_pred EEecCCcchHHHHHhcCCCEEEcCCC--CCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCC-CeE
Q 016596 284 LYASGSGGLLERLALTGVDVVSLDWT--VDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW-KHI 358 (386)
Q Consensus 284 ~H~cG~~~~l~~l~e~g~d~l~~d~~--~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~-g~I 358 (386)
+=+.=+..-++.+.++|++++-+... .++.-+++. .|+-+.|.-| ..|.+||...|..+.+.+... .++
T Consensus 93 ~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStG------matl~Ei~~Av~~i~~~G~~~~~i~ 166 (329)
T TIGR03569 93 LSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTG------MATLEEIEAAVGVLRDAGTPDSNIT 166 (329)
T ss_pred EEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECC------CCCHHHHHHHHHHHHHcCCCcCcEE
Confidence 22222233578889999999976543 455544443 3433333222 368999999988886543221 366
Q ss_pred EecCCCCCCCCcH--HHHHHHHHHHHhhc
Q 016596 359 LNLGHGIKVGTPE--ENVAHFFEVAKAIR 385 (386)
Q Consensus 359 ls~gc~i~~~tp~--Eni~a~~~a~~~yg 385 (386)
|-- |.-...+|+ -|+++|-..-+.|+
T Consensus 167 llh-C~s~YP~~~~~~nL~~I~~Lk~~f~ 194 (329)
T TIGR03569 167 LLH-CTTEYPAPFEDVNLNAMDTLKEAFD 194 (329)
T ss_pred EEE-ECCCCCCCcccCCHHHHHHHHHHhC
Confidence 632 443223333 36666555444453
No 111
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.54 E-value=15 Score=34.19 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-----------hH---H-H
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-----------LL---E-R 295 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-----------~l---~-~ 295 (386)
..+..+..|+|++.+.--+++--+.++.+++ -++.+.++++ |.|+++++-.-.. .+ . .
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~-----~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRl 174 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENI-----SQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARL 174 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHH-----HHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHH
Confidence 3445668899998876667776667776664 5678888887 6898886643211 11 1 2
Q ss_pred HHhcCCCEEEcCCCCCHH---HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-CCCcH
Q 016596 296 LALTGVDVVSLDWTVDMA---EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK-VGTPE 371 (386)
Q Consensus 296 l~e~g~d~l~~d~~~dl~---e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~~tp~ 371 (386)
=.++|+|++-..+..|.+ ++-+-.|-.+.+.||=. .++.+++.+.++..|++++ .| +..|-.+- .+.|.
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k----~~~~~~~l~~~~~ai~aGa-~G--~~~GRNifQ~~~p~ 247 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPK----TETEREFLEMVTAAIEAGA-MG--VAVGRNIFQHEDPE 247 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCC----CCChHHHHHHHHHHHHccC-cc--hhhhhhhhccCChH
Confidence 247899999887765544 44444444455555431 2488999999999999864 23 33455554 34444
Q ss_pred HHHHHHHHHHH
Q 016596 372 ENVAHFFEVAK 382 (386)
Q Consensus 372 Eni~a~~~a~~ 382 (386)
.-++|+..-++
T Consensus 248 ~m~~Ai~~Ivh 258 (265)
T COG1830 248 AMVKAIQAIVH 258 (265)
T ss_pred HHHHHHHHHhc
Confidence 44444444433
No 112
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.43 E-value=22 Score=33.55 Aligned_cols=94 Identities=30% Similarity=0.458 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g 300 (386)
.++.++...++|+|++++.-|.-...|++. +.-|++.+.+.. +.|+++|.. |.. . .+..+.+.+
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~----l~~y~~~ia~~~-----~~pi~iYn~P~~tg~~ls~~~l~~L~~~~ 155 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIPPYYFKPSQEE----LIDYFRAIADAT-----DLPIIIYNNPARTGNDLSPETLARLAKIP 155 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTSSSCCHHH----HHHHHHHHHHHS-----SSEEEEEEBHHHHSSTSHHHHHHHHHTST
T ss_pred HHHHHHHHhhcCceEEEEeccccccchhhH----HHHHHHHHHhhc-----CCCEEEEECCCccccCCCHHHHHHHhcCC
Confidence 345556677899999998777665567665 444677777554 468888776 432 2 255666643
Q ss_pred CCEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
++..+ +...|+ .++.+..++++.++.|-|.
T Consensus 156 -nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~ 189 (289)
T PF00701_consen 156 -NVVGIKDSSGDLERLIQLLRAVGPDFSVFCGDDE 189 (289)
T ss_dssp -TEEEEEESSSBHHHHHHHHHHSSTTSEEEESSGG
T ss_pred -cEEEEEcCchhHHHHHHHhhhcccCeeeeccccc
Confidence 55554 333444 4445566677776666553
No 113
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=88.43 E-value=3.3 Score=39.24 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHh
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLAL 298 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e 298 (386)
+.+.++++.+++.|++++++..+.+. .+|.+..++++ +..++.++. .+|++.++.+..+ .+ ....+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELL----EIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHH----HHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhh
Confidence 33445566677899999999877764 79999887763 345555543 4788888766543 23 44567
Q ss_pred cCCCEEEc
Q 016596 299 TGVDVVSL 306 (386)
Q Consensus 299 ~g~d~l~~ 306 (386)
.|+|++.+
T Consensus 95 ~Gad~v~v 102 (289)
T PF00701_consen 95 AGADAVLV 102 (289)
T ss_dssp TT-SEEEE
T ss_pred cCceEEEE
Confidence 78886643
No 114
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=88.42 E-value=17 Score=37.39 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFE 259 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ 259 (386)
++--++.++.+.++|++.|=++-+. .|+..|+
T Consensus 22 ~e~K~~ia~~L~~~GV~~IEvG~p~---~s~~d~e 53 (494)
T TIGR00973 22 VEEKLQIALALERLGVDIIEAGFPV---SSPGDFE 53 (494)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHH
Confidence 4455677788889999988654333 4676664
No 115
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.35 E-value=14 Score=34.04 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhh---------HHHHHHHHHHHHhhCCCCcEEEEecCC------
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFS---------LPYLKQIVDTVKQTHPDLSLILYASGS------ 289 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~---------~P~~k~l~~~i~~~~~~~~~~~H~cG~------ 289 (386)
+...++++.+.++|+|.+-+.-|... .++-..-++.. ....-++++.+++.. .+|+++-+--|
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 44566777888999999887633322 22222222211 123344555555533 45654432323
Q ss_pred -cchHHHHHhcCCCEEEc
Q 016596 290 -GGLLERLALTGVDVVSL 306 (386)
Q Consensus 290 -~~~l~~l~e~g~d~l~~ 306 (386)
..+++.+++.|++.+.+
T Consensus 93 ~~~fi~~~~~aG~~giii 110 (242)
T cd04724 93 LERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 22578888999997765
No 116
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.34 E-value=24 Score=33.69 Aligned_cols=155 Identities=22% Similarity=0.239 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++..++..++.+|+++.+++.- |+-.+++++...+.|+|++.
T Consensus 61 ~v~~~~v~~~~grvpviaG~g~~~------------------------------------t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 61 EVLEAVVEAVGGRVPVIAGVGSNS------------------------------------TAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHCCCCcEEEecCCCc------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 345556677777788877665441 23334666778889999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc---ch-HHHHHhc--CCCEEEc-CCCCCHHHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG---GL-LERLALT--GVDVVSL-DWTVDMAEGRR 317 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~---~~-l~~l~e~--g~d~l~~-d~~~dl~e~~~ 317 (386)
+.-|.-.-.+ ++-..-|++++.++. + .|+++...-.. .+ .+.+.++ -.+++.+ +...|+..+.+
T Consensus 105 ~v~PyY~k~~----~~gl~~hf~~ia~a~-~----lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~ 175 (299)
T COG0329 105 VVPPYYNKPS----QEGLYAHFKAIAEAV-D----LPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEE 175 (299)
T ss_pred EeCCCCcCCC----hHHHHHHHHHHHHhc-C----CCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHHH
Confidence 8777654444 556677889999988 3 58888876432 12 3444433 3467777 55567776665
Q ss_pred H---hCCC-eeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 318 R---LGPD-VAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 318 ~---~g~~-~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
. .+++ ..+. .|..+.. ...+. .|+.|+|-+.+|-+ |+-...|+++++
T Consensus 176 ~~~~~~~~~f~v~--------~G~d~~~----~~~~~-~G~~G~is~~~N~~-----p~~~~~l~~~~~ 226 (299)
T COG0329 176 IIAALGDRDFIVL--------SGDDELA----LPALL-LGADGVISVTANVA-----PELAVELYRAAK 226 (299)
T ss_pred HHHhcCccCeeEE--------eCchHHH----HHHHh-CCCCeEEecccccC-----HHHHHHHHHHHH
Confidence 4 5552 2222 2332222 22333 45668887766544 444555655544
No 117
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.23 E-value=3.4 Score=38.59 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+.+.+.++.+.++|++.|.+.|+.+ .+.|+...++ +..+++..+..++-+|++-+..+ + ..+ .+.|+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa 211 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAG-AMLPDDVRER--------VRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGA 211 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CcCHHHHHHH--------HHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCC
Confidence 3345566667789999999888776 5778776554 44444443223789999988752 2 322 36799
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 212 ~~vd 215 (263)
T cd07943 212 TRID 215 (263)
T ss_pred CEEE
Confidence 8874
No 118
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=88.06 E-value=4 Score=39.88 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.++++.+.++|++.|.++|..+ ...|.+..+++. .+++..+..++-+|++.+..+ + ..+ .+.|+
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G-~a~P~~v~~lv~--------~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa 267 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIG-VGTPGTVVPMLE--------AVMAVVPVDKLAVHFHDTYGQALANILVSLQMGI 267 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcC-CcCHHHHHHHHH--------HHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3455666778889999999988776 567777655443 333332234688999988763 3 444 46799
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 268 ~~vd 271 (347)
T PLN02746 268 STVD 271 (347)
T ss_pred CEEE
Confidence 8875
No 119
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.03 E-value=3 Score=40.83 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCC-----CCcE
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTHP-----DLSL 282 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~-----~~~~ 282 (386)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =.||. ..+..++++++++.-+ +.++
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 444555555566677789999998864322 3666622 11232 4566778888877532 4456
Q ss_pred EEEecCC-------c--c---hHHHHHhcCCCEEEcCCC--------C------CHHHHHHHhCC--CeeEEecCCcCcc
Q 016596 283 ILYASGS-------G--G---LLERLALTGVDVVSLDWT--------V------DMAEGRRRLGP--DVAVQGNVDPGAL 334 (386)
Q Consensus 283 ~~H~cG~-------~--~---~l~~l~e~g~d~l~~d~~--------~------dl~e~~~~~g~--~~~l~G~vd~~~l 334 (386)
.+.+.+. . . ++..+.+.|+|.+++... . ..+.+++.+.. .+...|++
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi----- 293 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSI----- 293 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCC-----
Confidence 6665532 1 1 236667789999987421 0 13445665532 24445555
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCCeEEec
Q 016596 335 FGSKDFITNRINDTVRKAG-RWKHILNL 361 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~-~~g~Ils~ 361 (386)
.|+++..+.++.-.+..+ ++++|..|
T Consensus 294 -~t~e~ae~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 294 -NTPDDALEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred -CCHHHHHHHHHcCCChHHHhHHHHhCc
Confidence 345665555443223223 44455444
No 120
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.94 E-value=5.4 Score=39.21 Aligned_cols=141 Identities=14% Similarity=0.207 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhC-CCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTH-PDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~-~~~~~~~H~ 286 (386)
++.+.+-..+.++...++|.|+|-+.-.-+ .|+||.. =+||. .-+..++++++++.. ++.++.+-+
T Consensus 139 I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 139 IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 445555555666777889999998865332 3677633 11222 456678888888863 345666655
Q ss_pred cC-----------Ccc-----hHHHHHhcCCCEEEcCCC-----------CCH-HHHHHHhCCCeeEEecCCcC-cc---
Q 016596 287 SG-----------SGG-----LLERLALTGVDVVSLDWT-----------VDM-AEGRRRLGPDVAVQGNVDPG-AL--- 334 (386)
Q Consensus 287 cG-----------~~~-----~l~~l~e~g~d~l~~d~~-----------~dl-~e~~~~~g~~~~l~G~vd~~-~l--- 334 (386)
.+ ... ++..+.+.|+|.+++... .++ .++|+.++-.+...|++.+. .+
T Consensus 219 s~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 219 SQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccc
Confidence 43 110 124456789999977321 123 45777777778888988432 11
Q ss_pred -C-------CCHHHHHHHHHHH-HHHcC-CCCeEEec
Q 016596 335 -F-------GSKDFITNRINDT-VRKAG-RWKHILNL 361 (386)
Q Consensus 335 -~-------gt~eev~~~v~~~-i~~~~-~~g~Ils~ 361 (386)
. -|+++..+.+.+- .+..+ ++++|..|
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP 335 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDP 335 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCc
Confidence 1 3677766665532 23223 44555444
No 121
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.83 E-value=25 Score=33.26 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhC--CCCcEEEEecCCcchHHHHHhcC
Q 016596 225 TTSMAKYVQYQA-DNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTH--PDLSLILYASGSGGLLERLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~-e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~--~~~~~~~H~cG~~~~l~~l~e~g 300 (386)
++.-+++++.++ +.|++.|=++ ++ .||+.|+ ..+++.+.....+ .+..+.-+. .+..-++...++|
T Consensus 18 ~e~K~~i~~~L~~~~Gv~~IEvg----~~~~s~~e~~-----av~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~A~~~g 87 (280)
T cd07945 18 PSEKLNIAKILLQELKVDRIEVA----SARVSEGEFE-----AVQKIIDWAAEEGLLDRIEVLGFV-DGDKSVDWIKSAG 87 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEec----CCCCCHHHHH-----HHHHHHHHhhhhccccCcEEEEec-CcHHHHHHHHHCC
Confidence 445566777775 4599987643 33 7887762 2333333221100 012222232 2322367777888
Q ss_pred CCEEEcC
Q 016596 301 VDVVSLD 307 (386)
Q Consensus 301 ~d~l~~d 307 (386)
++.+++.
T Consensus 88 ~~~i~i~ 94 (280)
T cd07945 88 AKVLNLL 94 (280)
T ss_pred CCEEEEE
Confidence 8876543
No 122
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=87.76 E-value=23 Score=36.13 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=35.6
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
|+..+++.|+.-+ .+ .++.+++++.+++. ++.+...+-.+.+ .++.|.+.|...+++.
T Consensus 245 ~~~~i~f~Dd~f~-~~--------~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iG 304 (472)
T TIGR03471 245 EVREFFFDDDTFT-DD--------KPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVG 304 (472)
T ss_pred CCcEEEEeCCCCC-CC--------HHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEc
Confidence 7788887776422 22 34566777777765 3443333323333 4789999999877654
No 123
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.72 E-value=2.9 Score=43.95 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++.++.++.+.++|+|.|.+.|..| .+.|... .+++..+++.. +.++-+|++.+... + ..+ .+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G-~~~P~~~--------~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAG-LLTPYAA--------YELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCC-CcCHHHH--------HHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence 4556667778889999999988766 4677665 44555666654 47889999987753 3 333 47899
Q ss_pred CEEEcC-----C---CCCHHHHHHHhC
Q 016596 302 DVVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~d-----~---~~dl~e~~~~~g 320 (386)
+.++.. . ..+++.+...+.
T Consensus 224 d~vD~ai~g~g~~agn~~~e~vv~~L~ 250 (592)
T PRK09282 224 DIIDTAISPLAFGTSQPPTESMVAALK 250 (592)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 988531 1 246666665554
No 124
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=87.57 E-value=24 Score=32.89 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe--cCCcchHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA--SGSGGLLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~--cG~~~~l~ 294 (386)
++.+.+..++-++++.+.|+|+|++-.-.. --++|+. .-.+-+++.++++.- ..|+-+.+ ++...-|.
T Consensus 23 ~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~t-----va~m~~i~~~v~~~~-~~p~GvnvL~nd~~aal~ 96 (257)
T TIGR00259 23 LNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPET-----VAAMAVIAGQLKSDV-SIPLGINVLRNDAVAALA 96 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHH-----HHHHHHHHHHHHHhc-CCCeeeeeecCCCHHHHH
Confidence 566777778888899999999998743211 1244433 334556667776653 34543332 22222355
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc---c-CCCHHHHHHHHHHHHHHcCCC
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA---L-FGSKDFITNRINDTVRKAGRW 355 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~---l-~gt~eev~~~v~~~i~~~~~~ 355 (386)
.-..+|.+-+-. |+. ..+-..|+.++.++.+..+|.... | .-+ +.+.++.++..+...
T Consensus 97 iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~---~~e~a~~~~~~~~aD 173 (257)
T TIGR00259 97 IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRD---LESIALDTVERGLAD 173 (257)
T ss_pred HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCC---HHHHHHHHHHhcCCC
Confidence 555667665432 221 245567888898899999998753 3 334 444445555444323
Q ss_pred CeEEe
Q 016596 356 KHILN 360 (386)
Q Consensus 356 g~Ils 360 (386)
+.|++
T Consensus 174 avivt 178 (257)
T TIGR00259 174 AVILS 178 (257)
T ss_pred EEEEC
Confidence 44443
No 125
>TIGR03586 PseI pseudaminic acid synthase.
Probab=87.45 E-value=23 Score=34.35 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCC----c--------CC----CCHHHHHHh--hHHHHHHHHHHHHhhCCCCcEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSW----A--------TE----LSPVDFEEF--SLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~----~--------~~----iSp~~f~ef--~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
+..++++++..++|||+|=+- +.. . +. -..++|+++ -..+++++.+..++. |.++
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~~- 93 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKEL--GLTI- 93 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHh--CCcE-
Confidence 344556666778899975321 111 0 00 112445543 456667899999987 4542
Q ss_pred EEecCC-cchHHHHHhcCCCEEEcCCC--CCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 284 LYASGS-GGLLERLALTGVDVVSLDWT--VDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 284 ~H~cG~-~~~l~~l~e~g~d~l~~d~~--~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
-+.-- ..-++.+.++|++++-+... .++.-+++. .|.-+.|- +. .+|.+||...+..+.+. |...++
T Consensus 94 -~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvils----tG--~~t~~Ei~~Av~~i~~~-g~~~i~ 165 (327)
T TIGR03586 94 -FSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS----TG--IATLEEIQEAVEACREA-GCKDLV 165 (327)
T ss_pred -EEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEE----CC--CCCHHHHHHHHHHHHHC-CCCcEE
Confidence 22222 22478889999999977543 454444332 33322221 11 37899999998887654 333566
Q ss_pred EecCCCCCCCCcHH--HHHHHHHHHHhh
Q 016596 359 LNLGHGIKVGTPEE--NVAHFFEVAKAI 384 (386)
Q Consensus 359 ls~gc~i~~~tp~E--ni~a~~~a~~~y 384 (386)
|-- |.-...+|++ |+++|-..-+.|
T Consensus 166 Llh-C~s~YP~~~~~~nL~~i~~lk~~f 192 (327)
T TIGR03586 166 LLK-CTSSYPAPLEDANLRTIPDLAERF 192 (327)
T ss_pred EEe-cCCCCCCCcccCCHHHHHHHHHHh
Confidence 644 5433334554 555554444445
No 126
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.27 E-value=5.1 Score=38.55 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHHH---------HhhHHHHHHHHHHHHhhC-CCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDFE---------EFSLPYLKQIVDTVKQTH-PDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f~---------ef~~P~~k~l~~~i~~~~-~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-+.-..+ .|+||..=. +-=..+..++++++++.. ++.++.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 555556666677778899999998754221 266764210 111234567777777653 245666654
Q ss_pred cCC------cc------hHHHHHhcCCCEEEc
Q 016596 287 SGS------GG------LLERLALTGVDVVSL 306 (386)
Q Consensus 287 cG~------~~------~l~~l~e~g~d~l~~ 306 (386)
... ++ ++..+.+.|+|.+++
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~v 247 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHV 247 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 421 11 246677889999975
No 127
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.20 E-value=15 Score=33.92 Aligned_cols=148 Identities=13% Similarity=0.186 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..++.++.+.++|++.|-++-+...-..| ..+...++++.+.+.+++.++..++-.....++...+.|++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~ 90 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVP------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDE 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccc------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCE
Confidence 34556677777888999988765433221112 123344556666655323444344432233578899999998
Q ss_pred EEcCCCC---------------CHHHHH------HHhCCCeeEEecCCcCccC--CCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 304 VSLDWTV---------------DMAEGR------RRLGPDVAVQGNVDPGALF--GSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 304 l~~d~~~---------------dl~e~~------~~~g~~~~l~G~vd~~~l~--gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+.+.-.. ++.++. +..| +.+..++-.. .. -+++++.+.++++.+.+.+ .+.+.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~-~i~l~ 166 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDA-FGCKTDPEYVLEVAKALEEAGAD-EISLK 166 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEee-cCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 7552211 122221 2223 2333333111 13 7888888888888765423 34443
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 361 LGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 361 ~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
.. -.-..|+.+..+++.+++.
T Consensus 167 Dt---~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 167 DT---VGLATPEEVAELVKALREA 187 (265)
T ss_pred hh---cCCcCHHHHHHHHHHHHHh
Confidence 22 2234667788888887763
No 128
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.18 E-value=5.2 Score=37.53 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
+.++++.+.++|++.|.+.|+.+ .+.|+...+++. .+++..+ ++++-+|++-+..+ + ..+ .+.|++
T Consensus 140 ~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 140 LLELLELVNEIKPDVFYIVDSFG-SMYPEDIKRIIS--------LLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred HHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHH--------HHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCC
Confidence 34455667778999999988776 578887666543 3333221 26899999988752 2 333 467988
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
.++.
T Consensus 211 ~vd~ 214 (266)
T cd07944 211 IIDA 214 (266)
T ss_pred EEEE
Confidence 8753
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.10 E-value=4.4 Score=37.56 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l~ 305 (386)
+.++.+.+.|++.|.+.|..+ .++|+.+++++ +.+++..+++++-+|++-+..+ + ..+ .+.|++.++
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~li--------~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVG-LATPEEVAELV--------KALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHcCCCEEEechhcC-CcCHHHHHHHH--------HHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEE
Confidence 444556778999999888765 68998877763 3333333236789999988753 3 333 367888874
No 130
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.99 E-value=27 Score=32.74 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC----cc---hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS----GG---LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~----~~---~l~~l~e~g 300 (386)
.++.++...++|+|++.+.-|...-.|++. +.-|++++.+.. +.|+++|.... .. .+..+.+.+
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~----~~~~~~~ia~~~-----~~pi~iYn~P~~tg~~l~~~~~~~L~~~~ 151 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEG----IVAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAEHP 151 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHH----HHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHhcCC
Confidence 345555677889999998666544455443 455677777763 46888876543 21 234444432
Q ss_pred CCEEEc-CCCCCHHH---HHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDMAE---GRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl~e---~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+.. +.+..++++.++.|-|.
T Consensus 152 -~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 185 (281)
T cd00408 152 -NIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDD 185 (281)
T ss_pred -CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchH
Confidence 45544 33345544 44445555666555553
No 131
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=86.74 E-value=4.2 Score=38.13 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCC--CcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~--~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
.+.++.+.++|++.|.+.|+.+. +.|+...++ +..+++..++ +++-+|++-+..+ + ..+ .+.|++
T Consensus 146 ~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~ 216 (268)
T cd07940 146 IEVVEAAIEAGATTINIPDTVGY-LTPEEFGEL--------IKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGAR 216 (268)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCC
Confidence 34445566789999999887764 777776664 3344443333 6788999987652 2 222 367998
Q ss_pred EEE
Q 016596 303 VVS 305 (386)
Q Consensus 303 ~l~ 305 (386)
.++
T Consensus 217 ~iD 219 (268)
T cd07940 217 QVE 219 (268)
T ss_pred EEE
Confidence 874
No 132
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=86.69 E-value=3.8 Score=42.97 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++..+.++.+.++|+|.|.+.|..+ .+.|.... +++..+++.. +.|+-+|++-+... ...+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G-~~~P~~v~--------~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAG-ILTPKAAY--------ELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHH--------HHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 4455666678889999999888765 57776643 4455555544 46888999887653 2444 47799
Q ss_pred CEEEc-----CC---CCCHHHHHHHhC
Q 016596 302 DVVSL-----DW---TVDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~g 320 (386)
+.++. .. ..+++.+...+.
T Consensus 219 ~~vd~ai~GlG~~tGn~~le~vv~~L~ 245 (582)
T TIGR01108 219 DGIDTAISSMSGGTSHPPTETMVAALR 245 (582)
T ss_pred CEEEeccccccccccChhHHHHHHHHH
Confidence 98853 22 246666555553
No 133
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=86.61 E-value=15 Score=32.06 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
...+.++..++.|++.+++-+.. ++.+.|.+.+ +++.+.+++. +.++++|. ..+...+++++.+++
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~---~~~~~~~~~a----~~l~~~~~~~--~~~liin~-----~~~la~~~~~dGvHl 78 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD---LSDEELLELA----RRLAELCQKY--GVPLIIND-----RVDLALELGADGVHL 78 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS---S-HHHHHHHH----HHHHHHHHHT--TGCEEEES------HHHHHHCT-SEEEE
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC---CCccHHHHHH----HHHHHHhhcc--eEEEEecC-----CHHHHHhcCCCEEEe
Confidence 34556667888999999986664 5666666644 5566666665 56788876 356677899999999
Q ss_pred CCC-CCHHHHHHHhCCCeeE
Q 016596 307 DWT-VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 307 d~~-~dl~e~~~~~g~~~~l 325 (386)
.+. .+..++++.++.+..+
T Consensus 79 ~~~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 79 GQSDLPPAEARKLLGPDKII 98 (180)
T ss_dssp BTTSSSHHHHHHHHTTTSEE
T ss_pred cccccchHHhhhhcccceEE
Confidence 764 6788888888765444
No 134
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=86.61 E-value=29 Score=32.82 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-c--hHHHHHh-cCCCE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-G--LLERLAL-TGVDV 303 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~--~l~~l~e-~g~d~ 303 (386)
++.++...++|+|++.+.-|.....|++ =+.-|++++.++. +.|++++.+ |.. . .+..+.+ .+ ++
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~----~i~~~f~~v~~~~-----~~pi~lYn~~g~~l~~~~l~~L~~~~p-ni 153 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQE----GLYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAERCP-NL 153 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHH----HHHHHHHHHHhcC-----CCCEEEEeCCCCCCCHHHHHHHHhcCC-CE
Confidence 3456667788999998866654444543 3444777777765 357777655 432 2 2455555 44 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEecC
Q 016596 304 VSL-DWTVDMAE---GRRRLGPDVAVQGNV 329 (386)
Q Consensus 304 l~~-d~~~dl~e---~~~~~g~~~~l~G~v 329 (386)
+.+ +...|+.. +.+..+++..++.|.
T Consensus 154 vgiKds~~d~~~~~~~~~~~~~~~~v~~G~ 183 (289)
T cd00951 154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeCC
Confidence 555 33456554 444556555555554
No 135
>PRK14057 epimerase; Provisional
Probab=86.46 E-value=28 Score=32.42 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.0
Q ss_pred HHHHHHHhCCCEEEEe--cC-Cc-C-CCCHHHHHHhh--HHH--------HHHHHHHHHhhCCCCcEEEEecCCcc---h
Q 016596 231 YVQYQADNGAQAVQIF--DS-WA-T-ELSPVDFEEFS--LPY--------LKQIVDTVKQTHPDLSLILYASGSGG---L 292 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~--d~-~~-~-~iSp~~f~ef~--~P~--------~k~l~~~i~~~~~~~~~~~H~cG~~~---~ 292 (386)
.++.+.++|+|.+.+- |. +. + -++|+..+.+- .|. -.+.++.+.+.|.+ .+.+|...... .
T Consensus 37 el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad-~It~H~Ea~~~~~~~ 115 (254)
T PRK14057 37 YLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAH-CITLQAEGDIHLHHT 115 (254)
T ss_pred HHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCC-EEEEeeccccCHHHH
Confidence 4445667899988752 21 11 1 36666655541 120 13456666666544 57889875433 3
Q ss_pred HHHHHhcCC----------CEEEcCCCCCHHHHHHHhC--CCeeEEecCCcCc
Q 016596 293 LERLALTGV----------DVVSLDWTVDMAEGRRRLG--PDVAVQGNVDPGA 333 (386)
Q Consensus 293 l~~l~e~g~----------d~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~~ 333 (386)
+..+.+.|+ -++.+.+.++++.+...++ +.+.+|. |+|..
T Consensus 116 l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMt-V~PGf 167 (254)
T PRK14057 116 LSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLA-VNPGY 167 (254)
T ss_pred HHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEE-ECCCC
Confidence 688888886 4667777778887777665 5577775 77753
No 136
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=86.40 E-value=29 Score=32.61 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCc-----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC----------
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWA-----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS---------- 289 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~-----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~---------- 289 (386)
++-.++.++.+.++|.+.|=++-+.. .+++.+.|+ +++++.+... +.++..++-|.
T Consensus 20 ~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e-----~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~p~ 90 (275)
T cd07937 20 TEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWE-----RLRELRKAMP----NTPLQMLLRGQNLVGYRHYPD 90 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHH-----HHHHHHHhCC----CCceehhcccccccCccCCCc
Confidence 34444567778889999876654321 133443332 2333333332 34556666552
Q ss_pred -cc--hHHHHHhcCCCEEEcC-CCCCHHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 290 -GG--LLERLALTGVDVVSLD-WTVDMAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 290 -~~--~l~~l~e~g~d~l~~d-~~~dl~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.. .++...+.|++.+.+. ...|+..+ .+..|. .+..+++...- ..+++.+.+.++++.+.+.+ .
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~---~ 165 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK--HVEGAICYTGSPVHTLEYYVKLAKELEDMGAD---S 165 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC---E
Confidence 12 3567778899988653 22344322 223343 33345543322 57889998888888765423 3
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++-..++ .-..|+.+..+++++++
T Consensus 166 i~l~DT~-G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 166 ICIKDMA-GLLTPYAAYELVKALKK 189 (275)
T ss_pred EEEcCCC-CCCCHHHHHHHHHHHHH
Confidence 3333333 33346678888887775
No 137
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.39 E-value=5.7 Score=39.37 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCC-c----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCC-CCcEEEE
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSW-A----TELSPVD---FEEFS------LPYLKQIVDTVKQTHP-DLSLILY 285 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~-~~~~~~H 285 (386)
++.+.+-..+.++...++|.|+|-|.-.. + .|+||.. =+||. .-+..++++.+++.-+ +.++.+.
T Consensus 145 I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 145 VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 44455555556667778999999886522 2 3777732 12222 4566788888877532 3467776
Q ss_pred ecCC---------------------c-c----hHHHHHhcCCCEEEcCCC-------------------CC-HHHHHHHh
Q 016596 286 ASGS---------------------G-G----LLERLALTGVDVVSLDWT-------------------VD-MAEGRRRL 319 (386)
Q Consensus 286 ~cG~---------------------~-~----~l~~l~e~g~d~l~~d~~-------------------~d-l~e~~~~~ 319 (386)
+... . . ++..+.+.|+|.+++... .+ .+.+|+.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 304 (382)
T cd02931 225 YSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV 304 (382)
T ss_pred EechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC
Confidence 6521 1 1 235556789999876411 01 24567767
Q ss_pred CCCeeEEecCC
Q 016596 320 GPDVAVQGNVD 330 (386)
Q Consensus 320 g~~~~l~G~vd 330 (386)
+-.+...|++.
T Consensus 305 ~~pvi~~G~i~ 315 (382)
T cd02931 305 DVPVIMAGRME 315 (382)
T ss_pred CCCEEEeCCCC
Confidence 66666677773
No 138
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=86.31 E-value=20 Score=32.36 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
.+.++..++.|++.+++-+-. .+.+.+ .-.-+++.+.++++ +++.+ +.+. ++.-.+.++|.+|+.+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~---~~~~~~----~~~a~~~~~lc~~~--~v~li--INd~---~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKD---LSDEEY----LALAEKLRALCQKY--GVPLI--INDR---VDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCC---CChHHH----HHHHHHHHHHHHHh--CCeEE--ecCc---HHHHHhCCCCEEEcCC
Confidence 566777889999999986643 333443 34456777777776 45544 4444 4555689999999977
Q ss_pred C-CCHHHHHHHhCCCeeE
Q 016596 309 T-VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 309 ~-~dl~e~~~~~g~~~~l 325 (386)
. +++.++++.++.++.|
T Consensus 90 ~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 90 DDMPLAEARELLGPGLII 107 (211)
T ss_pred cccchHHHHHhcCCCCEE
Confidence 5 7889999999887554
No 139
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.15 E-value=4.2 Score=42.71 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g 300 (386)
.++..+.++.+.++|+|.|.+.|..+ .+.|....++ +..+++.. +.|+-+|++.+... ...+ .+.|
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G-~l~P~~~~~l--------v~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAG-LLKPYAAYEL--------VSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHHH--------HHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcC
Confidence 45666677778889999999887765 5777765543 44444443 46889999988753 2444 4789
Q ss_pred CCEEEc-----CC---CCCHHHHHHHh
Q 016596 301 VDVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 301 ~d~l~~-----d~---~~dl~e~~~~~ 319 (386)
++.++. .. ..+++++...+
T Consensus 224 a~~vD~ai~glG~~~Gn~~le~vv~~L 250 (593)
T PRK14040 224 IDGVDTAISSMSMTYGHSATETLVATL 250 (593)
T ss_pred CCEEEeccccccccccchhHHHHHHHH
Confidence 998853 22 14556555555
No 140
>PRK08508 biotin synthase; Provisional
Probab=85.74 E-value=32 Score=32.42 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcCCCEEEcC
Q 016596 233 QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~d 307 (386)
+...+.|+..+.+.++..+ ++. ....|+.++++.+++.++ .+.+|.| |..+ .+..|.+.|++.++.+
T Consensus 50 ~~a~~~g~~~~~lv~sg~~-~~~-----~~~e~~~ei~~~ik~~~p--~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 50 KMAKANGALGFCLVTSGRG-LDD-----KKLEYVAEAAKAVKKEVP--GLHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred HHHHHCCCCEEEEEeccCC-CCc-----ccHHHHHHHHHHHHhhCC--CcEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 3344568888776443322 232 244688889999988642 2345645 5544 4788999999998753
No 141
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=85.32 E-value=33 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCC-CcEEEEecCC-c-chHHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPD-LSLILYASGS-G-GLLERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~-~~~~~H~cG~-~-~~l~~l~e~g~d~l~ 305 (386)
..+++..+.+..+|....+.. .+++. | +.+.++.+.+.+.. + +|+.+|.|-. . ..+....+.|++.+.
T Consensus 31 avi~aAe~~~~PvIl~~~~~~~~~~~~--~-~~~~~~~~~~a~~~-----~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 31 AILEAAEEENSPVIIQVSEGAIKYMGG--Y-KMAVAMVKTLIERM-----SIVPVALHLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred HHHHHHHHhCCCEEEEcCcchhhccCc--H-HHHHHHHHHHHHHC-----CCCeEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 334455566788776433221 12221 1 12334444444433 4 7999997633 3 246677788999998
Q ss_pred cCCC-CCH----H------HHHHHhCCCeeEEecCCcC----c------c-CCCHHHHHHHHHHH-HHHcCCCCeEEecC
Q 016596 306 LDWT-VDM----A------EGRRRLGPDVAVQGNVDPG----A------L-FGSKDFITNRINDT-VRKAGRWKHILNLG 362 (386)
Q Consensus 306 ~d~~-~dl----~------e~~~~~g~~~~l~G~vd~~----~------l-~gt~eev~~~v~~~-i~~~~~~g~Ils~g 362 (386)
+|.. .+. + +..+.+| +.+-+-+... . . ..+|||+.+.+++. ++..+ .=+++-
T Consensus 103 id~s~l~~~eni~~t~~v~~~a~~~g--v~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~La---vs~Gt~ 177 (282)
T TIGR01859 103 IDGSHLPFEENLALTKKVVEIAHAKG--VSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLA---AAIGTS 177 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEe---eccCcc
Confidence 8764 222 2 2223344 3444322220 1 1 34899888777644 22111 002333
Q ss_pred CCCC---CCCcHHHHHHHHHH
Q 016596 363 HGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 363 c~i~---~~tp~Eni~a~~~a 380 (386)
|++. +...+|.++.+.+.
T Consensus 178 hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 178 HGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred ccccCCCCccCHHHHHHHHHH
Confidence 5444 34566666665544
No 142
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=85.18 E-value=6 Score=37.25 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..++++.+.++|++.|.+.|+.+ .++|....+++ +.+++..++.++-+|++-+... + ..+ .+.|++.
T Consensus 153 ~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 223 (273)
T cd07941 153 ALATLKAAAEAGADWLVLCDTNG-GTLPHEIAEIV--------KEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQ 223 (273)
T ss_pred HHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHH--------HHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 33444455678999999888776 57787766554 3444433346889999988652 2 222 3579888
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
++
T Consensus 224 id 225 (273)
T cd07941 224 VQ 225 (273)
T ss_pred EE
Confidence 75
No 143
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=85.09 E-value=41 Score=34.30 Aligned_cols=145 Identities=14% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEe-----cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIF-----DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-------- 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~-----d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-------- 290 (386)
-++-.+..++.+.++|.+.|=+. |....|++++-|+. ++++.+.+ ++.++..++-|..
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~-----l~~l~~~~----~~~~l~~l~r~~N~~G~~~~~ 93 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWER-----LKEIRKRL----KNTKIQMLLRGQNLVGYRHYA 93 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHH-----HHHHHHhC----CCCEEEEEeccccccCccccc
Confidence 34555667777888898887652 11234788875442 33333332 2445555444421
Q ss_pred ----c-hHHHHHhcCCCEEEc-CCCCCHHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 291 ----G-LLERLALTGVDVVSL-DWTVDMAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 291 ----~-~l~~l~e~g~d~l~~-d~~~dl~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
. +++...+.|++++.+ +...|+..+ .+..|. .+.|+++-..- .-|++.+.+.++++.+.+.+
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad--- 168 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA--HVQGAISYTVSPVHTLEYYLEFARELVDMGVD--- 168 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC---
Confidence 1 146667889998865 333333322 233443 45566643322 45788888888877665323
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++- |+...-..|+.+..+++++++
T Consensus 169 ~I~i-~Dt~G~l~P~~v~~Lv~~lk~ 193 (467)
T PRK14041 169 SICI-KDMAGLLTPKRAYELVKALKK 193 (467)
T ss_pred EEEE-CCccCCcCHHHHHHHHHHHHH
Confidence 2333 333344567778888888775
No 144
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.08 E-value=33 Score=31.94 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhc-
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT- 299 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~- 299 (386)
.+.-.+...+.++.+++.|||.|-+.-..+ ..+++. -.+++++.+.+.. +.|+.+-+. +...++.-.+.
T Consensus 21 ~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~~e-------e~~r~v~~i~~~~-~~piSIDT~-~~~v~e~aL~~~ 90 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDLNVDYG-GLDGVS-------AMKWLLNLLATEP-TVPLMLDST-NWEVIEAGLKCC 90 (252)
T ss_pred HcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHH-------HHHHHHHHHHHhc-CCcEEeeCC-cHHHHHHHHhhC
Confidence 334446666788889999999998865322 455433 2344444455433 456544332 11245555555
Q ss_pred -CCCEEE-cCCCC------CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc----C--CCCeEEecCCCC
Q 016596 300 -GVDVVS-LDWTV------DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA----G--RWKHILNLGHGI 365 (386)
Q Consensus 300 -g~d~l~-~d~~~------dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~----~--~~g~Ils~gc~i 365 (386)
|+++++ +.... .+.++.+++|-.++++-. ++...-.|.++..+.++++++.+ + ....|+-||-+.
T Consensus 91 ~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~-~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgig~ 169 (252)
T cd00740 91 QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF-DEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLILP 169 (252)
T ss_pred CCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCccc
Confidence 999884 43221 133445667766666642 22222334444444444444432 2 248999999885
Q ss_pred CC
Q 016596 366 KV 367 (386)
Q Consensus 366 ~~ 367 (386)
..
T Consensus 170 ~~ 171 (252)
T cd00740 170 IA 171 (252)
T ss_pred cc
Confidence 44
No 145
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=84.87 E-value=6.4 Score=37.10 Aligned_cols=69 Identities=30% Similarity=0.387 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..++++.+.++|++.|.+.|+.+. +.|+...++ +..+++.. +.++-+|++-+..+ + ..+ .+.|++.
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~-~~~l~~H~Hnd~GlA~aN~laA~~aGa~~ 220 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGL-LTPYAAYEL--------VKALKKEV-GLPIHLHTHDTSGLAVATYLAAAEAGVDI 220 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCC-CCHHHHHHH--------HHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 334455567889999999887764 667765543 44444443 36889999988653 2 222 4679988
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
++.
T Consensus 221 vd~ 223 (275)
T cd07937 221 VDT 223 (275)
T ss_pred EEE
Confidence 753
No 146
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=84.85 E-value=9.4 Score=35.30 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=68.6
Q ss_pred HHHHHHhCCCEEEE--ec--CC-------cCCCCH---------HHHHHh--hHHHHHHHHHHHHhhCCCCcEEEEecCC
Q 016596 232 VQYQADNGAQAVQI--FD--SW-------ATELSP---------VDFEEF--SLPYLKQIVDTVKQTHPDLSLILYASGS 289 (386)
Q Consensus 232 ~~~~~e~G~d~i~i--~d--~~-------~~~iSp---------~~f~ef--~~P~~k~l~~~i~~~~~~~~~~~H~cG~ 289 (386)
+++..++|||.|=+ .. .. ..+.++ ++|+++ -...+++|.+.+++. |+ .+.+.-.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--gi--~f~stpf 77 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKEL--GI--DFFSTPF 77 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHT--T---EEEEEE-
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHc--CC--EEEECCC
Confidence 56778899998743 21 11 112222 445544 455678999999997 33 2333222
Q ss_pred c-chHHHHHhcCCCEEEcCC--CCCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 290 G-GLLERLALTGVDVVSLDW--TVDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 290 ~-~~l~~l~e~g~d~l~~d~--~~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
. .-++.+.++++..+-+.. .+++.-+++. .|.-+.|.-| ..|.+||++.|+-+-+. ++..++|-- |.
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG------~stl~EI~~Av~~~~~~-~~~~l~llH-C~ 149 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG------MSTLEEIERAVEVLREA-GNEDLVLLH-CV 149 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T------T--HHHHHHHHHHHHHH-CT--EEEEE-E-
T ss_pred CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC------CCCHHHHHHHHHHHHhc-CCCCEEEEe-cC
Confidence 2 247888899999885532 3555544443 4433333222 47889998887776444 434444432 33
Q ss_pred CCCCCcH--HHHHHHHHHHHhhc
Q 016596 365 IKVGTPE--ENVAHFFEVAKAIR 385 (386)
Q Consensus 365 i~~~tp~--Eni~a~~~a~~~yg 385 (386)
-..-||+ -|+++|-..-+.||
T Consensus 150 s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 150 SSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp SSSS--GGG--TTHHHHHHHHST
T ss_pred CCCCCChHHcChHHHHHHHHhcC
Confidence 3333444 46666655555554
No 147
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.72 E-value=6.4 Score=36.65 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
+.+.++.+.++|++.|.++|+.+. +.|+...++ +..+++.. +.++-+|++-+... + ..+ .+.|++.
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~-~~~l~~H~Hn~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGI-LDPFTTYEL--------IRRLRAAT-DLPLEFHAHNDLGLATANTLAAVRAGATH 210 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 344455566789999999888774 677765554 34444443 26889999988652 2 222 4679988
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
++
T Consensus 211 vd 212 (259)
T cd07939 211 VS 212 (259)
T ss_pred EE
Confidence 74
No 148
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.36 E-value=25 Score=30.50 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----c----hHHHHHh
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-----G----LLERLAL 298 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-----~----~l~~l~e 298 (386)
..+.++.+++.|++++++.- -..+.+.+...+. .++++.++.... . ..+...+
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g----------------~~i~~~~~~~~~~--~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP----------------GYVRLAADALAGS--DVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH----------------HHHHHHHHHhCCC--CCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 44455566779999988643 1222233333220 267788876554 2 1466678
Q ss_pred cCCCEEEcCCC----CC--HH-------HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 299 TGVDVVSLDWT----VD--MA-------EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 299 ~g~d~l~~d~~----~d--l~-------e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.|+|.+.+... .+ .+ ++.+..+..+.++-...|... .+++++.+.++.+ ...+-.++=.+++. .
T Consensus 77 ~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~-~~~g~~~iK~~~~~-~ 153 (201)
T cd00945 77 LGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIA-AEAGADFIKTSTGF-G 153 (201)
T ss_pred cCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHH-HHhCCCEEEeCCCC-C
Confidence 89998865321 22 22 233332112333322223222 4677777665555 33331133333321 2
Q ss_pred CCCCcHHHHHHHHHHH
Q 016596 366 KVGTPEENVAHFFEVA 381 (386)
Q Consensus 366 ~~~tp~Eni~a~~~a~ 381 (386)
+.+...+.++.+.+..
T Consensus 154 ~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 154 GGGATVEDVKLMKEAV 169 (201)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 2344678888777654
No 149
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.96 E-value=38 Score=31.80 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-c------c-hHHH
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-G------G-LLER 295 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~------~-~l~~ 295 (386)
-++..+++++.+.++|++.|=++-+ ..||+. .|+.+++.+.... +.....+.-.. . . .++.
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWP---GSNPKD-----TEFFARAKKLKLK---HAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC---cCCHHH-----HHHHHHHHHcCCC---CcEEEEEecccccCCCccchHHHHH
Confidence 3566677888899999998865322 356665 4445555544311 22334443221 1 1 2567
Q ss_pred HHhcCCCEEEcCCC-----------CC----H---H---HHHHHhCCCeeEEecCCcCc-cCCCHHHHHHHHHHHHHHcC
Q 016596 296 LALTGVDVVSLDWT-----------VD----M---A---EGRRRLGPDVAVQGNVDPGA-LFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 296 l~e~g~d~l~~d~~-----------~d----l---~---e~~~~~g~~~~l~G~vd~~~-l~gt~eev~~~v~~~i~~~~ 353 (386)
..+.|++.+.+... .+ + . +..+..|-++.+. ..+-.. ...+++.+.+.++++.+.+.
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 88899998765211 11 1 1 1222334433321 111101 13578888888888876532
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+ .+.|.-.. .-..|+.+..+++++++
T Consensus 166 ~-~i~l~DT~---G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 166 D-WLVLCDTN---GGTLPHEIAEIVKEVRE 191 (273)
T ss_pred C-EEEEecCC---CCCCHHHHHHHHHHHHH
Confidence 3 44443222 23356667888887765
No 150
>PRK06256 biotin synthase; Validated
Probab=83.95 E-value=42 Score=32.35 Aligned_cols=66 Identities=26% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcCCCEEEc
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~ 306 (386)
++.+.+.|+..+.+.....+. +.+ -.+++.++++.+++.. +. -++.+ |..+ .+..|.+.|++.+++
T Consensus 100 ~~~~~~~g~~~~~l~~~g~~p-~~~-----~~~~~~e~i~~i~~~~-~i--~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 100 AKEAIEEGAGTFCIVASGRGP-SGK-----EVDQVVEAVKAIKEET-DL--EICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHCCCCEEEEEecCCCC-Cch-----HHHHHHHHHHHHHhcC-CC--cEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 334556787666554333221 111 1367778888888752 32 23333 4433 478899999998765
No 151
>PLN02363 phosphoribosylanthranilate isomerase
Probab=83.93 E-value=37 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC--CcHHHHHHHHHHHHhhcC
Q 016596 337 SKDFITNRINDTVRKAGRWKHILNLGHGIKVG--TPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 337 t~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~--tp~Eni~a~~~a~~~yg~ 386 (386)
|||.|.+. ++..+.-|.=+++|-+..++ -.++.|+++++++++..|
T Consensus 209 ~peNV~~a----i~~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~~~~ 256 (256)
T PLN02363 209 TPENVHEA----VSLLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKSVAY 256 (256)
T ss_pred CHHHHHHH----HHhcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHhhcC
Confidence 44555444 44555456777888887666 589999999999998765
No 152
>PRK15452 putative protease; Provisional
Probab=83.75 E-value=22 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE---ecCCcc------hHHHHHhcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY---ASGSGG------LLERLALTG 300 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H---~cG~~~------~l~~l~e~g 300 (386)
+.+++.+++|||.|+++-+.-++=+. -..|-..-+++.++.+|++ |+.+.+- +..+.. .++.+.++|
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~--~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR--NNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh--ccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 45567789999999986532110000 0122233477788888987 4555443 222211 145566889
Q ss_pred CCEEEcCCCCCHHHHHHHhCCCeeEEec
Q 016596 301 VDVVSLDWTVDMAEGRRRLGPDVAVQGN 328 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~g~~~~l~G~ 328 (386)
+|++-+...--+.-+++..++ +.+.+.
T Consensus 90 vDgvIV~d~G~l~~~ke~~p~-l~ih~s 116 (443)
T PRK15452 90 PDALIMSDPGLIMMVREHFPE-MPIHLS 116 (443)
T ss_pred CCEEEEcCHHHHHHHHHhCCC-CeEEEE
Confidence 999877654445556665543 456553
No 153
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.74 E-value=26 Score=35.31 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE--ecCCc-chHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY--ASGSG-GLLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H--~cG~~-~~l~~l~e~g~d~l~~d 307 (386)
+++.+.++|++++.+.... +. ...+++++.++++ |.++++- ++.+. ..+....+.|+|.+.+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~----~~--------~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA----DD--------STIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecCC----Ch--------HHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7778889999998865321 11 0135677777776 4555552 33332 23455678899988543
Q ss_pred CC--------C---CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHH
Q 016596 308 WT--------V---DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAH 376 (386)
Q Consensus 308 ~~--------~---dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a 376 (386)
.. . .+.++++.++-.+.+.|||.+ +.+.++++.+.+ ++++++. =+....|.+.+++
T Consensus 139 pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~-----------~n~~~~l~aGAd-gv~vGsa-I~~~~d~~~~~~~ 205 (430)
T PRK07028 139 VGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDA-----------ETAAKAVAAGAD-IVIVGGN-IIKSADVTEAARK 205 (430)
T ss_pred eccchhhcCCChHHHHHHHHhhCCCcEEEECCCCH-----------HHHHHHHHcCCC-EEEEChH-HcCCCCHHHHHHH
Confidence 21 1 234455544444777888854 224444444322 4444433 1122346677777
Q ss_pred HHHHHHhh
Q 016596 377 FFEVAKAI 384 (386)
Q Consensus 377 ~~~a~~~y 384 (386)
+.+..++|
T Consensus 206 l~~~i~~~ 213 (430)
T PRK07028 206 IREAIDSG 213 (430)
T ss_pred HHHHHhcc
Confidence 77766654
No 154
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.70 E-value=7.3 Score=37.91 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCcch-H-HH--HHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSGGL-L-ER--LALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~~~-l-~~--l~e~g 300 (386)
+.+.+.++.+.++|++.|.+.|+.+. +.|+...++ +..+++.. +++++-+|.+-|..+ + .. ..+.|
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGA-LLPEDVRDR--------VRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 34445566777899999998887764 666665443 33333332 257899999988753 2 22 34789
Q ss_pred CCEEE
Q 016596 301 VDVVS 305 (386)
Q Consensus 301 ~d~l~ 305 (386)
++.++
T Consensus 215 a~~iD 219 (337)
T PRK08195 215 ATRID 219 (337)
T ss_pred CCEEE
Confidence 98774
No 155
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=83.25 E-value=42 Score=31.79 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
++.++...+.|+|++.+.-|...-.|+ +-+.-|++++.++. +.|++++.
T Consensus 89 i~~a~~a~~~Gad~v~v~~P~y~~~~~----~~l~~~f~~va~a~-----~lPv~iYn 137 (293)
T PRK04147 89 QELAKYATELGYDAISAVTPFYYPFSF----EEICDYYREIIDSA-----DNPMIVYN 137 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEe
Confidence 344555567888888876555322232 34566777777765 34777664
No 156
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.24 E-value=7.8 Score=37.65 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCcch-H-HHH--HhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSGGL-L-ERL--ALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~~~-l-~~l--~e~g 300 (386)
+.+.+.++.+.++|++.|.+.|+.+ .+.|+...+++ ..+++.. +++++-+|++-|..+ + ..+ .+.|
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G-~~~P~~v~~~v--------~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 213 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAG-AMLPDDVRDRV--------RALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG 213 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCC-CCCHHHHHHHH--------HHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC
Confidence 3455666677789999999888766 47777765543 3333322 136899999988753 2 333 4789
Q ss_pred CCEEE
Q 016596 301 VDVVS 305 (386)
Q Consensus 301 ~d~l~ 305 (386)
++.+.
T Consensus 214 a~~iD 218 (333)
T TIGR03217 214 ATRID 218 (333)
T ss_pred CCEEE
Confidence 88874
No 157
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=83.19 E-value=31 Score=32.37 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCC--c-c-hHHHHHhcCCC-----EEEcCCCCCHHHHHHHhCCC--eeEEecCCc
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYASGS--G-G-LLERLALTGVD-----VVSLDWTVDMAEGRRRLGPD--VAVQGNVDP 331 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~cG~--~-~-~l~~l~e~g~d-----~l~~d~~~dl~e~~~~~g~~--~~l~G~vd~ 331 (386)
.-.+++.++..++. |.|+++|+... . . .++.+.+.|+. +.+.+...|.+.+++.+... +.+-|.. .
T Consensus 135 ~~~f~~~~~lA~~~--~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~-~ 211 (293)
T cd00530 135 EKVLRAAARAQKET--GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIG-K 211 (293)
T ss_pred HHHHHHHHHHHHHH--CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCC-c
Confidence 34566777888886 68999998752 3 2 47888887763 33555444777777765432 2222211 1
Q ss_pred Cc-c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 332 GA-L-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 332 ~~-l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.. - .-+.++..+.++++++.+....++++++..-
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 212 DKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred ccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCc
Confidence 11 0 1124556677888888765568899988754
No 158
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.13 E-value=41 Score=31.56 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
...++++.+.++|+.++... .+-..=||.-|+.+....++.+.+..++. |.+++-=.... ..++.+.++ ++++-+
T Consensus 42 ~~~~~A~~lk~~g~~~~r~~-~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~d~-~~~~~l~~~-vd~~kI 116 (266)
T PRK13398 42 QMVKVAEKLKELGVHMLRGG-AFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVMDT-RDVEEVADY-ADMLQI 116 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEe-eecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeCCh-hhHHHHHHh-CCEEEE
Confidence 34566677777888866543 11122345567767777777777777776 56755433322 235777777 788876
Q ss_pred CCC--CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEE
Q 016596 307 DWT--VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHIL 359 (386)
Q Consensus 307 d~~--~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Il 359 (386)
... .+..-+++ .++. +. |..| .+|.+|+...+..+... |....+|
T Consensus 117 ga~~~~n~~LL~~-~a~~-----gk-PV~lk~G~~~s~~e~~~A~e~i~~~-Gn~~i~L 167 (266)
T PRK13398 117 GSRNMQNFELLKE-VGKT-----KK-PILLKRGMSATLEEWLYAAEYIMSE-GNENVVL 167 (266)
T ss_pred CcccccCHHHHHH-HhcC-----CC-cEEEeCCCCCCHHHHHHHHHHHHhc-CCCeEEE
Confidence 543 34333333 3321 11 2222 46999999998776544 4333444
No 159
>PRK08185 hypothetical protein; Provisional
Probab=83.04 E-value=40 Score=31.94 Aligned_cols=139 Identities=15% Similarity=0.216 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. ...+ .+ +.++.+.+.+.. .+|+.+|.+-..+ .+....+.|++.+.+
T Consensus 28 avi~AAee~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~-----~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 28 AVVEEAEANNAPAIIAIHPNELDFLG----DN-FFAYVRERAKRS-----PVPFVIHLDHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred HHHHHHHHhCCCEEEEeCcchhhhcc----HH-HHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 344455667888776433322 2333 12 455555555443 5899999864333 567778899999988
Q ss_pred CCC-C----CHHHHHH------HhCCCeeE-EecCCc---C-c------cCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-V----DMAEGRR------RLGPDVAV-QGNVDP---G-A------LFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-~----dl~e~~~------~~g~~~~l-~G~vd~---~-~------l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. . +++..++ .+|-.+.. .|-|.- . . ++-+|||+.+.+++. ++.+. .=+++.|
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LA---vaiGt~H 174 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLA---VAIGTAH 174 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEE---eccCccc
Confidence 754 2 2333333 33321111 222211 1 1 134888888888775 44431 1123334
Q ss_pred CC-----CCCCcHHHHHHHHHHH
Q 016596 364 GI-----KVGTPEENVAHFFEVA 381 (386)
Q Consensus 364 ~i-----~~~tp~Eni~a~~~a~ 381 (386)
++ .|+..+|.++.+.+++
T Consensus 175 G~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 175 GIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred CCcCCCCCCCcCHHHHHHHHHhh
Confidence 43 3556677777766543
No 160
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=82.88 E-value=12 Score=32.51 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-c--hHH----HH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-G--LLE----RL 296 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~--~l~----~l 296 (386)
++..++.++...++|+|++.+.-+.....+.. .+....+++++.+.+ +. +.|+++... +.. . .+. ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~--~~~~~~~~~~i~~~~-~~--~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGD--WEEVLEEIAAVVEAA-DG--GLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCC--HHHHHHHHHHHHHHh-cC--CceEEEEEECCCCCCHHHHHHHHHHH
Confidence 45556677778899999998754442211100 366677888888876 32 467777654 222 1 222 23
Q ss_pred HhcCCCEEEcCCC-----CCH---HHHHHHhCC--CeeEEecCC
Q 016596 297 ALTGVDVVSLDWT-----VDM---AEGRRRLGP--DVAVQGNVD 330 (386)
Q Consensus 297 ~e~g~d~l~~d~~-----~dl---~e~~~~~g~--~~~l~G~vd 330 (386)
.+.|++++-.... .|+ .++++.++. .+.+.|+++
T Consensus 139 ~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 4678998855332 244 445555542 455566665
No 161
>PLN02417 dihydrodipicolinate synthase
Probab=82.78 E-value=43 Score=31.55 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-.-.|+ +-+.-|++++.+. . |++++. +|.. . .+..+.+.+
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~----~~i~~~f~~va~~------~-pi~lYn~P~~tg~~l~~~~l~~l~~~p- 153 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQ----EGLIKHFETVLDM------G-PTIIYNVPGRTGQDIPPEVIFKIAQHP- 153 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCH----HHHHHHHHHHHhh------C-CEEEEEChhHhCcCCCHHHHHHHhcCC-
Confidence 345555667788887776554322332 3334455555552 2 455542 3322 1 234444443
Q ss_pred CEEEc-CCCCCHHHHHHHhCCCeeEEecCC
Q 016596 302 DVVSL-DWTVDMAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 302 d~l~~-d~~~dl~e~~~~~g~~~~l~G~vd 330 (386)
+++.+ +...| ....+..++++.++.|-|
T Consensus 154 ni~giKdss~~-~~~~~~~~~~~~v~~G~d 182 (280)
T PLN02417 154 NFAGVKECTGN-DRVKQYTEKGILLWSGND 182 (280)
T ss_pred CEEEEEeCCCc-HHHHHHhcCCeEEEEccc
Confidence 44444 33345 554444555556655554
No 162
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=82.76 E-value=7.2 Score=44.21 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g 300 (386)
.++..+.++.+.++|+|.|.|.|.. +++.|....+ ++..+++.. +.|+-+|++.+... + ..+ .+.|
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~-Gll~P~~~~~--------Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaG 757 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMA-GLLKPAAAKL--------LIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAG 757 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc-CCcCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhC
Confidence 4667788888899999999987655 4688876544 455555544 57899999877652 2 333 4789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+++++.
T Consensus 758 ad~vD~ 763 (1143)
T TIGR01235 758 VDVVDV 763 (1143)
T ss_pred CCEEEe
Confidence 999854
No 163
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=82.16 E-value=30 Score=32.38 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC--CCHH--HHHHHhCCCeeEEecCC
Q 016596 255 PVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT--VDMA--EGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 255 p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~--~dl~--e~~~~~g~~~~l~G~vd 330 (386)
|.-|+.+...-++.+.+..++. |.+++.=.+ +...++.+.++ ++++-+... .+.. +.....|.-+.+-=|
T Consensus 67 p~s~~g~g~~gl~~l~~~~~~~--Gl~~~t~~~-d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G-- 140 (260)
T TIGR01361 67 PYSFQGLGEEGLKLLRRAADEH--GLPVVTEVM-DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRG-- 140 (260)
T ss_pred CccccccHHHHHHHHHHHHHHh--CCCEEEeeC-ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCC--
Confidence 3346666666666677777776 566443222 22246777788 888876532 3433 333333332222111
Q ss_pred cCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC----CCCCcHHHHHHHHHHHHhhc
Q 016596 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI----KVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 331 ~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i----~~~tp~Eni~a~~~a~~~yg 385 (386)
+.+|++|+...+..+.+. |...++|.- |++ |..-..-|++++....+.|+
T Consensus 141 ---~~~t~~e~~~Ave~i~~~-Gn~~i~l~~-rG~s~y~~~~~~~~dl~~i~~lk~~~~ 194 (260)
T TIGR01361 141 ---MGNTIEEWLYAAEYILSS-GNGNVILCE-RGIRTFEKATRNTLDLSAVPVLKKETH 194 (260)
T ss_pred ---CCCCHHHHHHHHHHHHHc-CCCcEEEEE-CCCCCCCCCCcCCcCHHHHHHHHHhhC
Confidence 146999999999888754 344566632 333 33333456666655544443
No 164
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=82.05 E-value=25 Score=32.01 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHH-hcC-CCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLA-LTG-VDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~-e~g-~d~l~ 305 (386)
.|++.+.++|+|.|.+.--. .+...++++.+|+. |....+-..-++. .+..++ +.. +-+.+
T Consensus 72 ~~i~~~~~~gad~i~~H~Ea-------------~~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 72 RIIPDFAKAGASMITFHVEA-------------SEHVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHhCCCEEEEcccC-------------cccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 56678889999998874221 13567888999997 4566666666654 354444 333 12224
Q ss_pred cCCC-----------CCHHHHHHHhC-----CCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC
Q 016596 306 LDWT-----------VDMAEGRRRLG-----PDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT 369 (386)
Q Consensus 306 ~d~~-----------~dl~e~~~~~g-----~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t 369 (386)
+++. ..+.++++... -.+.+-|||++ + .++++++.+ -.+++++++ -+-.+-
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~-------e----ni~~l~~aG-Ad~vVvGSa-If~~~d 203 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV-------D----NIREIAEAG-ADMFVAGSA-IFGQPD 203 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH-------H----HHHHHHHcC-CCEEEEeHH-HhCCCC
Confidence 4322 13566666653 22667888854 2 334455443 336666654 122344
Q ss_pred cHHHHHHHHHHHHhhc
Q 016596 370 PEENVAHFFEVAKAIR 385 (386)
Q Consensus 370 p~Eni~a~~~a~~~yg 385 (386)
+.++++.+.+..++.+
T Consensus 204 ~~~~i~~l~~~~~~~~ 219 (220)
T PRK08883 204 YKAVIDEMRAELAKVK 219 (220)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7788888877766543
No 165
>PRK10812 putative DNAse; Provisional
Probab=81.90 E-value=23 Score=33.22 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC----EEEcCCCCCHHHHHHHhCC--CeeEEecCCcCc
Q 016596 261 FSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD----VVSLDWTVDMAEGRRRLGP--DVAVQGNVDPGA 333 (386)
Q Consensus 261 f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d----~l~~d~~~dl~e~~~~~g~--~~~l~G~vd~~~ 333 (386)
.=...+++.++..++. +.|+++|+-+... .++.+.+.+.. ++++. ..+.+.+++.+.- .+.+-|.+
T Consensus 108 ~Q~~vf~~ql~lA~e~--~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~f-sG~~~~a~~~~~~G~~is~~g~~---- 180 (265)
T PRK10812 108 RQQESFRHHIQIGREL--NKPVIVHTRDARADTLAILREEKVTDCGGVLHCF-TEDRETAGKLLDLGFYISFSGIV---- 180 (265)
T ss_pred HHHHHHHHHHHHHHHh--CCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEee-cCCHHHHHHHHHCCCEEEECeee----
Confidence 3345667777777776 6899999887766 57888776542 55665 3577777776542 23333222
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC-------CcHHHHHHHHHHH
Q 016596 334 LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVG-------TPEENVAHFFEVA 381 (386)
Q Consensus 334 l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~-------tp~Eni~a~~~a~ 381 (386)
.+.+.+. ++++++...-.++++.+++..... -.|.++...++.+
T Consensus 181 t~~~~~~----~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~i 231 (265)
T PRK10812 181 TFRNAEQ----LRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYM 231 (265)
T ss_pred ecCccHH----HHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHH
Confidence 2333333 445555554457888888753211 2356666655544
No 166
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=81.80 E-value=11 Score=36.68 Aligned_cols=86 Identities=20% Similarity=0.375 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||.. =++|. .-+..++++.+++.. +.++.+-+.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis 215 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRIS 215 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEec
Confidence 444445555666777889999998864322 3777732 12232 456677888888764 456677655
Q ss_pred C-------Cc-c----hHHHHHhcCCCEEEcC
Q 016596 288 G-------SG-G----LLERLALTGVDVVSLD 307 (386)
Q Consensus 288 G-------~~-~----~l~~l~e~g~d~l~~d 307 (386)
. .. . +...+.+.|+|.+++.
T Consensus 216 ~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs 247 (337)
T PRK13523 216 ASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVS 247 (337)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3 22 1 1355667799998774
No 167
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=81.58 E-value=5.6 Score=34.64 Aligned_cols=61 Identities=33% Similarity=0.509 Sum_probs=40.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
++..+++|+|.|++ |.+ ||++ ++++++.+++.++ .+.+-.+|+.+ .+..++++|+|++++.
T Consensus 93 ~~ea~~~g~d~I~l-D~~----~~~~--------~~~~v~~l~~~~~--~v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 93 AEEALEAGADIIML-DNM----SPED--------LKEAVEELRELNP--RVKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHTT-SEEEE-ES-----CHHH--------HHHHHHHHHHHTT--TSEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHhCCCEEEe-cCc----CHHH--------HHHHHHHHhhcCC--cEEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 33455689999885 543 6654 4556666666532 36778888876 4999999999999875
No 168
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.47 E-value=8.5 Score=43.76 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++..++++.+.++|++.|.|.|.. +++.|....+ ++.++++.. ++|+-+|++-+... + ..+ .+.|+
T Consensus 691 ~~~~~~a~~l~~~Ga~~i~ikDt~-G~l~P~~~~~--------lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGa 760 (1146)
T PRK12999 691 DYYVDLAKELEKAGAHILAIKDMA-GLLKPAAAYE--------LVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGV 760 (1146)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcc-CCCCHHHHHH--------HHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCC
Confidence 556677788888999999887655 4688876544 455555544 57899999887653 2 333 47899
Q ss_pred CEEEcC-----CC---CCHHHHHHHhC
Q 016596 302 DVVSLD-----WT---VDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~d-----~~---~dl~e~~~~~g 320 (386)
+.++.. .. .+++++...+.
T Consensus 761 d~vD~av~glg~~tgn~~le~vv~~L~ 787 (1146)
T PRK12999 761 DIVDVAVASMSGLTSQPSLNSIVAALE 787 (1146)
T ss_pred CEEEecchhhcCCcCCHHHHHHHHHHH
Confidence 988642 22 35666655553
No 169
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=81.33 E-value=10 Score=37.26 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++.+++++..++|++.|.++|+.+ .+.|..+.+++. .+++.. ++++-+|++-+..+ + ..+ .+.|++
T Consensus 143 ~l~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~ 212 (365)
T TIGR02660 143 FLVELAEVAAEAGADRFRFADTVG-ILDPFSTYELVR--------ALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGAT 212 (365)
T ss_pred HHHHHHHHHHHcCcCEEEEcccCC-CCCHHHHHHHHH--------HHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 334445556678999999988776 578888776553 333322 36889999988753 2 333 467988
Q ss_pred EEEc-----CC---CCCHHHHHHHh
Q 016596 303 VVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~-----d~---~~dl~e~~~~~ 319 (386)
.++. .+ ..+++++.-.+
T Consensus 213 ~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 213 HVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred EEEEEeeccccccccCCHHHHHHHH
Confidence 7742 22 25676665544
No 170
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.18 E-value=16 Score=35.52 Aligned_cols=89 Identities=24% Similarity=0.380 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHHH---HHhh------HHHHHHHHHHHHhhC-CCCcEE
Q 016596 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSW----ATELSPVDF---EEFS------LPYLKQIVDTVKQTH-PDLSLI 283 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f---~ef~------~P~~k~l~~~i~~~~-~~~~~~ 283 (386)
.+-++.+.+...+.++...++|.|+|-|.-.- ..|+||..= +||. .-+..++++++++.- ++.++.
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 34455566666667777889999999875322 136776421 1222 445567777777653 245677
Q ss_pred EEec-------CCc---c--hHHHHHhcCCCEEEc
Q 016596 284 LYAS-------GSG---G--LLERLALTGVDVVSL 306 (386)
Q Consensus 284 ~H~c-------G~~---~--~l~~l~e~g~d~l~~ 306 (386)
+-+. |.. . ++..+.+.|+|.+++
T Consensus 221 vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 221 IKLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 7664 222 1 246777889999884
No 171
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.73 E-value=5 Score=38.76 Aligned_cols=81 Identities=11% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHHh--cCCCEEEcCCCC-------C-HHHHHH
Q 016596 252 ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLAL--TGVDVVSLDWTV-------D-MAEGRR 317 (386)
Q Consensus 252 ~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~e--~g~d~l~~d~~~-------d-l~e~~~ 317 (386)
.++++.+.+|+...-.... ..+.+ +-|-.. .++.+.+ .|+|++-+|... + ++++|+
T Consensus 78 ~~~~e~~~~fv~~~~~~~~---------~~~~v-avG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 78 HYSVEEWAAFVNNSSADVL---------KHVMV-STGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred CCCHHHHHHHHHhcccccc---------ceEEE-EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 5789998888764211111 12233 444331 4677777 489998877542 2 789999
Q ss_pred HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 318 RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 318 ~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
.+++...+.||| .|+| .++.+++.+
T Consensus 148 ~~P~~~vIaGNV------~T~e----~a~~Li~aG 172 (346)
T PRK05096 148 AWPDKTICAGNV------VTGE----MVEELILSG 172 (346)
T ss_pred hCCCCcEEEecc------cCHH----HHHHHHHcC
Confidence 999888899998 4455 445566654
No 172
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=80.65 E-value=7.8 Score=36.55 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h-HHHHHhcCCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L-LERLALTGVD 302 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~-l~~l~e~g~d 302 (386)
.+-.++-++++.|+|||+||. .++-|+++|++|.. +++ .| .++.+-.-|.+. + .+.|.++|+.
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~----~al~~~e~i~~f~~--------av~--~p-l~~N~t~~g~tp~~~~~~L~~~Gv~ 229 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP----EALTDLEEIRAFAE--------AVP--VP-LPANITEFGKTPLLTVAELAELGVK 229 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEcc----ccCCCHHHHHHHHH--------hcC--CC-eeeEeeccCCCCCcCHHHHHhcCce
Confidence 677778889999999999883 33456888887653 443 11 455666667766 3 6999999999
Q ss_pred EEEcCC
Q 016596 303 VVSLDW 308 (386)
Q Consensus 303 ~l~~d~ 308 (386)
.+++..
T Consensus 230 ~V~~~~ 235 (289)
T COG2513 230 RVSYGL 235 (289)
T ss_pred EEEECc
Confidence 988764
No 173
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=80.53 E-value=47 Score=30.94 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc
Q 016596 222 RKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG 290 (386)
Q Consensus 222 ~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~ 290 (386)
+...+.+.+.++...+.|++.+.+.-.....-+.+...+.+...++++.+.+++. |+.+.++.++..
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gi~l~lEn~~~~ 147 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETK--GVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCC--CCEEEEeCCCCC
Confidence 3344555666667778899987663332222456666677788999999998876 678888877653
No 174
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.28 E-value=76 Score=33.41 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec-----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFD-----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-------- 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d-----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-------- 290 (386)
-++-.++.++.+.++|.+.|=+.. ..-.+++++-|+. ++++-+.+ ++.++..++-|..
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~-----l~~l~~~~----~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWER-----LRELKKAL----PNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHH-----HHHHHHhC----CCCEEEEEEccccccccccCc
Confidence 455566677788888988776531 1124788775442 33333333 3456666654421
Q ss_pred ----c-hHHHHHhcCCCEEEc-CCCCCHHHHH------HHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 291 ----G-LLERLALTGVDVVSL-DWTVDMAEGR------RRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 291 ----~-~l~~l~e~g~d~l~~-d~~~dl~e~~------~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
. .++...+.|+|++.+ +...|...++ +..|. .+.+++.-..- ..|++.+.+.++++.+.+.+ .+
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad-~I 166 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA--HAQGTISYTTSPVHTLETYLDLAEELLEMGVD-SI 166 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EE
Confidence 1 246667889998855 3333333222 23343 44454432222 46789998888888775323 33
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.| |+...-..|+.+..+++++++
T Consensus 167 ~i---~Dt~G~~~P~~v~~lv~~lk~ 189 (582)
T TIGR01108 167 CI---KDMAGILTPKAAYELVSALKK 189 (582)
T ss_pred EE---CCCCCCcCHHHHHHHHHHHHH
Confidence 33 455555667778888888875
No 175
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.25 E-value=28 Score=31.67 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=55.8
Q ss_pred HHHHHHHHhC-CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 230 KYVQYQADNG-AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 230 ~~~~~~~e~G-~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
+.++..++.| ++.|++-+.. ++.+.+.+.+ +++.+.++++ |++++++- .++.-.++|.|++|+.+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~---l~~~~~~~~a----~~l~~l~~~~--gv~liINd-----~~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYG---LDEATFQKQA----EKLVPVIQEA--GAAALIAG-----DSRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCC---CCHHHHHHHH----HHHHHHHHHh--CCEEEEeC-----HHHHHHHhCCCEEEECc
Confidence 4455677889 6999986544 5666665544 4555566665 56777663 35666788999999976
Q ss_pred C-CCHHHHHHHhCCCe
Q 016596 309 T-VDMAEGRRRLGPDV 323 (386)
Q Consensus 309 ~-~dl~e~~~~~g~~~ 323 (386)
. .++.++++.+|.+.
T Consensus 96 ~d~~~~~~r~~~~~~~ 111 (221)
T PRK06512 96 NLAALAEAIEKHAPKM 111 (221)
T ss_pred cccCHHHHHHhcCCCC
Confidence 4 57899999887553
No 176
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=80.16 E-value=41 Score=33.71 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=93.3
Q ss_pred CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 157 EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 157 ~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
.+|++.+.+++++..++.|..+-...+++++.+ .+ .+.++...
T Consensus 192 ~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~~~---em----------------------------------~~ra~~~~ 234 (412)
T TIGR03326 192 EERVEKLYKVRDKVEAETGERKEYLANITAPVR---EM----------------------------------ERRAELVA 234 (412)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEEecCCHH---HH----------------------------------HHHHHHHH
Confidence 356778888999999998876555566665521 11 12233455
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc----------c-h-HHHH-HhcCCCE
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG----------G-L-LERL-ALTGVDV 303 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----------~-~-l~~l-~e~g~d~ 303 (386)
++|++.+++.--+.++ + .++.+.+..... +.++..|-.+.- . . +-.| .=.|+|.
T Consensus 235 ~~G~~~~mv~~~~~G~-~----------~l~~l~~~~~~~--~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ 301 (412)
T TIGR03326 235 DLGGQYVMVDVVVCGW-S----------ALQYIRELTEDL--GLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQ 301 (412)
T ss_pred HhCCCeEEEEeeccch-H----------HHHHHHHhhccC--CeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCe
Confidence 6799988764333332 2 122233221111 456666655431 1 1 2222 3358888
Q ss_pred EEcCCC------CCHH---HHHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCC
Q 016596 304 VSLDWT------VDMA---EGRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVG 368 (386)
Q Consensus 304 l~~d~~------~dl~---e~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~ 368 (386)
+++... .+-+ .+.+.+-.. +|++.+..- . -++. .+.++++..| .-+|+..|-++ -|+
T Consensus 302 ~~~~t~~~Gk~~~~~~~~~~~~~~~~~~---~~~~k~~~Pv~sGG~~~~----~vp~~~~~~G-~Dvil~~GGGi~gHp~ 373 (412)
T TIGR03326 302 LHTGTAGVGKLEGGKEDTKQINDFLRQK---WHHIKPVFPVSSGGLHPG----LVPPLIDALG-KDLVIQAGGGVHGHPD 373 (412)
T ss_pred eeeCCCccCCCCCCHHHHHHHHHHHhCc---ccCCCCceEecCCCCChh----HHHHHHHhcC-CceEEecCCccccCCC
Confidence 866433 1222 333333221 566666542 2 1233 3345566666 35888888887 467
Q ss_pred CcHHHHHHHHHHHHh
Q 016596 369 TPEENVAHFFEVAKA 383 (386)
Q Consensus 369 tp~Eni~a~~~a~~~ 383 (386)
-+.+..+|+.+++..
T Consensus 374 G~~aGa~A~rqA~ea 388 (412)
T TIGR03326 374 GPRAGAKALRAAIDA 388 (412)
T ss_pred ChhhHHHHHHHHHHH
Confidence 888999999887654
No 177
>PRK14847 hypothetical protein; Provisional
Probab=80.12 E-value=58 Score=31.65 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcC----CCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG----VDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g----~d~l~ 305 (386)
+.++.+.+.|+|.|=++-|. .|++.|+ ..++|.+...- ..+..+..++-.....++.-.+++ ...++
T Consensus 58 ~IA~~L~~lGVd~IEvG~Pa---~s~~e~e-----~ir~I~~~~~~-~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vh 128 (333)
T PRK14847 58 RLFEQLVAVGLKEIEVAFPS---ASQTDFD-----FVRKLIDERRI-PDDVTIEALTQSRPDLIARTFEALAGSPRAIVH 128 (333)
T ss_pred HHHHHHHHcCCCEEEeeCCC---CCHHHHH-----HHHHHHHhCCC-CCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEE
Confidence 45666778999988765555 6777765 34445443210 001222333322222334444443 34455
Q ss_pred cCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCC-----C--eEEecCCCCCCCCcHHHHHHHH
Q 016596 306 LDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW-----K--HILNLGHGIKVGTPEENVAHFF 378 (386)
Q Consensus 306 ~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~-----g--~Ils~gc~i~~~tp~Eni~a~~ 378 (386)
+.-.++---++.++ ..|.+++.+.+.++++.+... | +.+.-+..=...++++.+..++
T Consensus 129 i~~p~Sd~h~~~kl---------------~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~ 193 (333)
T PRK14847 129 LYNPIAPQWRRIVF---------------GMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVC 193 (333)
T ss_pred EEecCCHHHHHHHh---------------CCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHH
Confidence 54444444444444 356788888888888776521 2 3455555545678899998888
Q ss_pred HHHHhh
Q 016596 379 EVAKAI 384 (386)
Q Consensus 379 ~a~~~y 384 (386)
+++.+.
T Consensus 194 ~~a~~~ 199 (333)
T PRK14847 194 DAVSAI 199 (333)
T ss_pred HHHHHH
Confidence 877543
No 178
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.63 E-value=44 Score=29.60 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
.+.++.+++.|++.+.+-... .+...+.+.+. ++.+..+.. ++++++| ..++...++|++.+++..
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~---~~~~~~~~~~~----~~~~~~~~~--~~~l~~~-----~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKG---LDTRERLELAR----ALKELCRRY--GVPLIVN-----DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCC---CCHHHHHHHHH----HHHHHHHHh--CCeEEEe-----ChHHHHHHcCCCEEecCc
Confidence 345666888999998764332 34444444333 333333333 4666665 346777888888887743
Q ss_pred C-CCHHHHHHH
Q 016596 309 T-VDMAEGRRR 318 (386)
Q Consensus 309 ~-~dl~e~~~~ 318 (386)
. .+...+++.
T Consensus 90 ~~~~~~~~~~~ 100 (212)
T PRK00043 90 DDLPVADARAL 100 (212)
T ss_pred ccCCHHHHHHH
Confidence 2 233444443
No 179
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=79.39 E-value=9.3 Score=35.34 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--chHHHHHhcCCCE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG--GLLERLALTGVDV 303 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~--~~l~~l~e~g~d~ 303 (386)
+-.++.++++.++|||++++.-+. +++++++ +.+.+ +.|+++..-.+. .-++.+.++|+..
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~----~~~~~~~--------~~~~~-----~~Pl~~~~~~~~~~~~~~~l~~lG~~~ 222 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK----DPEEIRA--------FAEAP-----DVPLNVNMTPGGNLLTVAELAELGVRR 222 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC----CHHHHHH--------HHhcC-----CCCEEEEecCCCCCCCHHHHHHCCCeE
Confidence 445667788999999999974333 5544444 34433 457777655444 2479999999998
Q ss_pred EEcCC
Q 016596 304 VSLDW 308 (386)
Q Consensus 304 l~~d~ 308 (386)
+++..
T Consensus 223 v~~~~ 227 (243)
T cd00377 223 VSYGL 227 (243)
T ss_pred EEECh
Confidence 87764
No 180
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=79.08 E-value=70 Score=31.63 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 214 PKVLHALLRKFTTSMAKYVQYQA-DNGAQAVQIFDSWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 214 Pe~v~~ll~~~~~~~~~~~~~~~-e~G~d~i~i~d~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
|+.+++-++.+.+--.++.+..+ +.|+|.|.+-..+++ -=||+.|.+.+ |++.+++ +.|+++-.||
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~v----k~V~~av-----~vPLIL~gsg 197 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVL----EDVLQAV-----DVPIVIGGSG 197 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHH----HHHHHhC-----CCCEEEeCCC
Confidence 45566666666644456666665 689999988654432 35666666533 4444554 5799999999
Q ss_pred Ccc----hHHHHHh-c-CCC-EEE-c--C-CCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--CC
Q 016596 289 SGG----LLERLAL-T-GVD-VVS-L--D-WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RW 355 (386)
Q Consensus 289 ~~~----~l~~l~e-~-g~d-~l~-~--d-~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~~ 355 (386)
|.. .++.-++ + |-. +++ . + +.-.+.++.+.+|..+.+++-.| .+..+...+++. ..| ..
T Consensus 198 ~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~D-------in~ak~Ln~kL~-~~Gv~~e 269 (389)
T TIGR00381 198 NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVVLSWTIMD-------INMQKTLNRYLL-KRGLMPR 269 (389)
T ss_pred CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeEEEEcCCc-------HHHHHHHHHHHH-HcCCCHH
Confidence 864 2443333 3 322 332 2 3 22356777788887555554232 344444545544 555 34
Q ss_pred CeEEecCCC
Q 016596 356 KHILNLGHG 364 (386)
Q Consensus 356 g~Ils~gc~ 364 (386)
..||-|++.
T Consensus 270 DIVlDP~t~ 278 (389)
T TIGR00381 270 DIVMDPTTC 278 (389)
T ss_pred HEEEcCCCc
Confidence 789988864
No 181
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=79.05 E-value=56 Score=31.11 Aligned_cols=73 Identities=7% Similarity=0.005 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-chHHHHHhcCCCEEEcCC
Q 016596 231 YVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-GLLERLALTGVDVVSLDW 308 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~~l~~l~e~g~d~l~~d~ 308 (386)
.+++..+....+|.-..+.. .++++ -+++.++.+.+.+... .++|+.+|.+-.. ..+....+.|++.+.+|.
T Consensus 34 vi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~---~~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~ 107 (293)
T PRK07315 34 ILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMG---ITVPVAIHLDHGHYEDALECIEVGYTSIMFDG 107 (293)
T ss_pred HHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcC---CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcC
Confidence 34455566777765332221 23331 1234555555555431 1469999986332 356777889999999876
Q ss_pred C
Q 016596 309 T 309 (386)
Q Consensus 309 ~ 309 (386)
.
T Consensus 108 S 108 (293)
T PRK07315 108 S 108 (293)
T ss_pred C
Confidence 4
No 182
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=78.94 E-value=46 Score=30.71 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=73.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~ 306 (386)
+.++.+.+.|++.+++.|-.+... ....-+...+++.+.+ +.| +...|... .+..+.+.|++.+.+
T Consensus 34 ~~a~~~~~~G~~~i~i~dl~~~~~----~~~~~~~~i~~i~~~~-----~ip--v~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 34 ELAKRYNEEGADELVFLDITASSE----GRDTMLDVVERVAEQV-----FIP--LTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccc----cCcchHHHHHHHHHhC-----CCC--EEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455566688999999988554211 1123344444444433 344 56777664 256667789998876
Q ss_pred CCC----C-CHHHHHHHhC-CCeeEEecCCc----C--c--cC----CCHHHHHHHHHHHHHHcCCCCeEEec--CCCCC
Q 016596 307 DWT----V-DMAEGRRRLG-PDVAVQGNVDP----G--A--LF----GSKDFITNRINDTVRKAGRWKHILNL--GHGIK 366 (386)
Q Consensus 307 d~~----~-dl~e~~~~~g-~~~~l~G~vd~----~--~--l~----gt~eev~~~v~~~i~~~~~~g~Ils~--gc~i~ 366 (386)
... + -+.++.+.+| .++++.=++.. . . .+ .+..+..+.++++.+. +=..+|+.+ ..+..
T Consensus 103 gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~ii~~~i~~~g~~ 181 (253)
T PRK02083 103 NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTK 181 (253)
T ss_pred ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHc-CCCEEEEcCCcCCCCC
Confidence 542 2 3567778887 44554422211 1 1 12 1222334444444333 323555543 23444
Q ss_pred CCCcHHHHHHHHHH
Q 016596 367 VGTPEENVAHFFEV 380 (386)
Q Consensus 367 ~~tp~Eni~a~~~a 380 (386)
.+...+.++.+.+.
T Consensus 182 ~g~d~~~i~~~~~~ 195 (253)
T PRK02083 182 NGYDLELTRAVSDA 195 (253)
T ss_pred CCcCHHHHHHHHhh
Confidence 55667766666543
No 183
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.72 E-value=14 Score=36.61 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++.+.++...++|++.|.++|+.+ .+.|..+.+++.-. ++.. +.++-+|++.+..+ + ..+ .+.|++
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~DT~G-~~~P~~v~~lv~~l--------~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~ 215 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCDTVG-ILDPFTMYELVKEL--------VEAV-DIPIEVHCHNDFGMATANALAGIEAGAK 215 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHHHH--------HHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 334445566678999999998885 67888877655432 2222 35889999988753 2 333 367988
Q ss_pred EEE
Q 016596 303 VVS 305 (386)
Q Consensus 303 ~l~ 305 (386)
.++
T Consensus 216 ~vd 218 (378)
T PRK11858 216 QVH 218 (378)
T ss_pred EEE
Confidence 774
No 184
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=78.71 E-value=40 Score=33.16 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHH---HHhh------HHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDF---EEFS------LPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f---~ef~------~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++.+.+-....++...++|.|+|-|.-.-+ .|+||..= .||. .-+..++++++++.-+.-.+.+.+.
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 455555566667778889999999865332 37887420 1221 3466677777777532223555543
Q ss_pred C----------Cc----c--hHHHHHhcCCCEEEcCCC---------CCH-HHHHHHhCCCeeEEecCCcCccCCCHHHH
Q 016596 288 G----------SG----G--LLERLALTGVDVVSLDWT---------VDM-AEGRRRLGPDVAVQGNVDPGALFGSKDFI 341 (386)
Q Consensus 288 G----------~~----~--~l~~l~e~g~d~l~~d~~---------~dl-~e~~~~~g~~~~l~G~vd~~~l~gt~eev 341 (386)
+ .. . ++..|.+.|+|.+++... .++ +.+|+.++..+...|++ |+++.
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~-------~~~~a 306 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAY-------TAEKA 306 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCC-------CHHHH
Confidence 2 11 1 124555679999987531 112 44566665444444433 35554
Q ss_pred HHHHHHH-HHHcC-CCCeEEec
Q 016596 342 TNRINDT-VRKAG-RWKHILNL 361 (386)
Q Consensus 342 ~~~v~~~-i~~~~-~~g~Ils~ 361 (386)
.+.+++- .+..+ ++.+|..|
T Consensus 307 e~~i~~G~~D~V~~gR~~iadP 328 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANP 328 (362)
T ss_pred HHHHHcCCCCEEEECHHhhhCc
Confidence 4444332 22223 44555444
No 185
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=78.48 E-value=48 Score=31.44 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHH--HhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL--ALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l--~e~g~d~l~~ 306 (386)
..-++.+.++|+|.| | -...++| ..+++..+|..+ ..+++||..++=+.+ .+.|+|.+..
T Consensus 86 ~~Ea~~L~~~GvDiI---D-~Te~lrp----------ad~~~~~~K~~f----~~~fmad~~~l~EAlrai~~GadmI~T 147 (293)
T PRK04180 86 FVEAQILEALGVDYI---D-ESEVLTP----------ADEEYHIDKWDF----TVPFVCGARNLGEALRRIAEGAAMIRT 147 (293)
T ss_pred HHHHHHHHHcCCCEE---e-ccCCCCc----------hHHHHHHHHHHc----CCCEEccCCCHHHHHHHHHCCCCeeec
Confidence 344566778999987 3 2225777 225566666643 356788887754444 4679998865
Q ss_pred C
Q 016596 307 D 307 (386)
Q Consensus 307 d 307 (386)
-
T Consensus 148 t 148 (293)
T PRK04180 148 K 148 (293)
T ss_pred c
Confidence 4
No 186
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=78.40 E-value=15 Score=34.44 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l~ 305 (386)
++++.+.++|++.|.+.|+.+ .++|....++ +..+++.. +.++-+|++.+..+ + ..+ .+.|++.++
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~~--------~~~~~~~~-~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd 214 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVG-IATPRQVYEL--------VRTLRGVV-SCDIEFHGHNDTGCAIANAYAALEAGATHID 214 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCC-CCCHHHHHHH--------HHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 455566678999999888776 5777765544 34444443 36889999988753 3 333 367988774
No 187
>PRK06852 aldolase; Validated
Probab=78.40 E-value=65 Score=30.88 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHhC------CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe--cCCc-------chH----
Q 016596 233 QYQADNG------AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA--SGSG-------GLL---- 293 (386)
Q Consensus 233 ~~~~e~G------~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~--cG~~-------~~l---- 293 (386)
+..++.| ||++.+.--++ | .+|.-.+-.+.++.+.+++. |.|++..+ -|.. ..+
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v~~G---s--~~E~~ml~~l~~v~~ea~~~--GlPll~~~yprG~~i~~~~~~~~ia~aa 194 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTIYLG---S--EYESEMLSEAAQIIYEAHKH--GLIAVLWIYPRGKAVKDEKDPHLIAGAA 194 (304)
T ss_pred HHHHhcCCccCCCceEEEEEEecC---C--HHHHHHHHHHHHHHHHHHHh--CCcEEEEeeccCcccCCCccHHHHHHHH
Confidence 3355666 77877654444 3 23344445578899999997 68987643 4531 111
Q ss_pred HHHHhcCCCEEEcCCC-----CCHHHHHHHhC---CC-eeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 294 ERLALTGVDVVSLDWT-----VDMAEGRRRLG---PD-VAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 294 ~~l~e~g~d~l~~d~~-----~dl~e~~~~~g---~~-~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
-.-.|+|+|++-+.+. .|.+..++... .. +.+.||= ..+.+++-+.+++.++..|..|.++ |=+
T Consensus 195 RiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~-----k~~~~e~L~~v~~ai~~aGa~Gv~~--GRN 267 (304)
T PRK06852 195 GVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGS-----STDPEEFLKQLYEQIHISGASGNAT--GRN 267 (304)
T ss_pred HHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCC-----CCCHHHHHHHHHHHHHHcCCceeee--chh
Confidence 1225889999987765 45555555432 11 3334432 2367889999999999665445555 455
Q ss_pred CCCCC-c--HHHHHHHHHHHH
Q 016596 365 IKVGT-P--EENVAHFFEVAK 382 (386)
Q Consensus 365 i~~~t-p--~Eni~a~~~a~~ 382 (386)
+-..- | .+-++|+...++
T Consensus 268 IfQ~~~p~~~~~~~Ai~~IVH 288 (304)
T PRK06852 268 IHQKPLDEAVRMCNAIYAITV 288 (304)
T ss_pred hhcCCCchHHHHHHHHHHHHh
Confidence 54333 3 444555555444
No 188
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=78.30 E-value=58 Score=30.29 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC---EEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCC
Q 016596 262 SLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD---VVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGS 337 (386)
Q Consensus 262 ~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d---~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt 337 (386)
-...+++.++.++++ +.|+++|+-+... .++.+.+.+.. ++++-. .+.+.+++.+....-| ++.+...+..
T Consensus 112 Q~~vf~~ql~lA~~~--~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fs-G~~~~a~~~l~~G~~i--S~~g~it~~~ 186 (258)
T PRK11449 112 QQWLLDEQLKLAKRY--DLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFS-GSLQQAERFVQLGYKI--GVGGTITYPR 186 (258)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCC-CCHHHHHHHHHCCCEE--EeCccccccC
Confidence 345667778888887 6899999999887 57888887542 566643 5677777765432221 2333222222
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 338 KDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 338 ~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.++ .+++++...-...++-+++..
T Consensus 187 ~~~----~~~~~~~ipldriL~ETD~P~ 210 (258)
T PRK11449 187 ASK----TRDVIAKLPLASLLLETDAPD 210 (258)
T ss_pred cHH----HHHHHHhCChhhEEEecCCCC
Confidence 233 455555555457888888764
No 189
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=78.04 E-value=17 Score=34.44 Aligned_cols=120 Identities=14% Similarity=0.264 Sum_probs=71.7
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 210 AFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIF-DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~-d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
.+.+||.+.++.+ +.|+|.+.++ .+.-+..... ..+-.+.++++.+.+ ++|+++|-.-
T Consensus 151 ~~t~~eea~~f~~--------------~tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-----~iPlv~hGgS 209 (282)
T TIGR01859 151 ELADPDEAEQFVK--------------ETGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-----NIPLVLHGAS 209 (282)
T ss_pred ccCCHHHHHHHHH--------------HHCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-----CCCEEEECCC
Confidence 3567877655543 2489987653 2221111110 122233445555444 5798888643
Q ss_pred Ccc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 289 SGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 289 ~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
... .+....+.|++.+++..... ...+++.+... -+..||..+ ....+.+++.+++.++.++
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~g 277 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEK---KDEYDPRKILGPAREAIKETVKEKMRLFG 277 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 443 47888999999999986432 23445545321 123666655 6777899999999999886
No 190
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=77.84 E-value=56 Score=29.85 Aligned_cols=81 Identities=23% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCEEEEecCCc--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWA--TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~--~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~ 305 (386)
+-+..+...|-.++.++..+. +.+.-..| +..+.++++.. |..+..|. |-.. .++.+++.++|+.+
T Consensus 46 k~~~el~kkGy~g~llSGGm~srg~VPl~kf--------~d~lK~lke~~-~l~inaHv-GfvdE~~~eklk~~~vdvvs 115 (275)
T COG1856 46 KRCMELEKKGYEGCLLSGGMDSRGKVPLWKF--------KDELKALKERT-GLLINAHV-GFVDESDLEKLKEELVDVVS 115 (275)
T ss_pred HHHHHHHhcCceeEEEeCCcCCCCCccHHHH--------HHHHHHHHHhh-CeEEEEEe-eeccHHHHHHHHHhcCcEEE
Confidence 334446677888888865433 34553333 33455666664 45666776 5443 68999999999999
Q ss_pred cCCCCCHHHHHHHhC
Q 016596 306 LDWTVDMAEGRRRLG 320 (386)
Q Consensus 306 ~d~~~dl~e~~~~~g 320 (386)
+|.--|=..+++.++
T Consensus 116 LDfvgDn~vIk~vy~ 130 (275)
T COG1856 116 LDFVGDNDVIKRVYK 130 (275)
T ss_pred EeecCChHHHHHHHc
Confidence 987666666666554
No 191
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=77.82 E-value=61 Score=30.78 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
..+++..+.+..+|.- +|+..++-.-.+++..++..+.+.. .+|+.+|.+-... .+..-++.|++.+.+|
T Consensus 33 avi~AAee~~sPvIlq-------~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~i~~ai~~GFtSVM~D 104 (286)
T PRK12738 33 AILEVCSEMRSPVILA-------GTPGTFKHIALEEIYALCSAYSTTY-NMPLALHLDHHESLDDIRRKVHAGVRSAMID 104 (286)
T ss_pred HHHHHHHHHCCCEEEE-------cCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCeEeec
Confidence 3344555677777653 3333332222233333343333332 5899999864333 4666678899999887
Q ss_pred CC-C----CHHHHHH------HhCCCeeE---E---ecC-Cc---C---ccCCCHHHHHHHHHHH-HHHcCCCCeEEecC
Q 016596 308 WT-V----DMAEGRR------RLGPDVAV---Q---GNV-DP---G---ALFGSKDFITNRINDT-VRKAGRWKHILNLG 362 (386)
Q Consensus 308 ~~-~----dl~e~~~------~~g~~~~l---~---G~v-d~---~---~l~gt~eev~~~v~~~-i~~~~~~g~Ils~g 362 (386)
.. . +++..++ .+| +.+ . |+. |. . .++-+||++++.+++. ++.+ -.=+++.
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiGt~ 179 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL---AVAIGTA 179 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEE---EeccCcc
Confidence 54 2 3333333 222 233 2 222 11 1 1256899998888764 2222 1223444
Q ss_pred CCCC---CCCcHHHHHHHHHH
Q 016596 363 HGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 363 c~i~---~~tp~Eni~a~~~a 380 (386)
|++- |....+.++.+.++
T Consensus 180 HG~Y~~~p~Ldfd~l~~I~~~ 200 (286)
T PRK12738 180 HGLYSKTPKIDFQRLAEIREV 200 (286)
T ss_pred cCCCCCCCcCCHHHHHHHHHH
Confidence 5553 44556666555444
No 192
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=77.76 E-value=90 Score=32.17 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS 305 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~ 305 (386)
+.+.+.++.+++.|||.|-++-.+..- .++ - .+.+++.+++.. +.|+.+-+. +...++.-.+.|+++++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p-~~~----~----v~~~V~~l~~~~-~~pISIDT~-~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD-DPD----V----VKEKVKTALDAL-DSPVIADTP-TLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC-cHH----H----HHHHHHHHHhhC-CCcEEEeCC-CHHHHHHHHHcCCCEEE
Confidence 667777888999999999886433211 111 2 445555555542 456544332 11246666778999884
Q ss_pred -cCCC--CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 306 -LDWT--VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 306 -~d~~--~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
+... ..+..+.+.+|-.++++=. . -...-+...+.++++.+. |=..+|+-|+=+....--.+++.++...-+
T Consensus 234 sVs~~~~d~~~~l~a~~g~~vVlm~~---~-~~~~~~~l~~~ie~a~~~-Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~ 308 (499)
T TIGR00284 234 MPDVENAVELASEKKLPEDAFVVVPG---N-QPTNYEELAKAVKKLRTS-GYSKVAADPSLSPPLLGLLESIIRFRRASR 308 (499)
T ss_pred ECCccchhHHHHHHHHcCCeEEEEcC---C-CCchHHHHHHHHHHHHHC-CCCcEEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 4332 1233335566665666531 1 011224444444443333 212689988876432223444444443333
Q ss_pred hhc
Q 016596 383 AIR 385 (386)
Q Consensus 383 ~yg 385 (386)
++|
T Consensus 309 ~~~ 311 (499)
T TIGR00284 309 LLN 311 (499)
T ss_pred hcC
Confidence 343
No 193
>PRK09875 putative hydrolase; Provisional
Probab=77.74 E-value=66 Score=30.62 Aligned_cols=95 Identities=16% Similarity=0.044 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCC-cc--hHHHHHhcCCC--EE---EcCCCCCHHHHHHHhCCCeeEEecCCcCcc--
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGS-GG--LLERLALTGVD--VV---SLDWTVDMAEGRRRLGPDVAVQGNVDPGAL-- 334 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~-~~--~l~~l~e~g~d--~l---~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l-- 334 (386)
.++....+.++. |.|++.|+... .. .++.+.+.|++ -+ +.|...|+...++.+... +..+ +|....
T Consensus 140 vl~Aaa~a~~~T--G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G-~~l~-fD~~g~~~ 215 (292)
T PRK09875 140 VFIAAALAHNQT--GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLG-AYVQ-FDTIGKNS 215 (292)
T ss_pred HHHHHHHHHHHH--CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcC-CEEE-eccCCCcc
Confidence 344444555554 68999997653 22 37888899984 22 556667988888876432 3333 444332
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCC
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGH 363 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc 363 (386)
.-+.++..+.++.+++.+-..+.+||.+=
T Consensus 216 ~~pd~~r~~~i~~L~~~Gy~drilLS~D~ 244 (292)
T PRK09875 216 YYPDEKRIAMLHALRDRGLLNRVMLSMDI 244 (292)
T ss_pred cCCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 22345555666666665436688887653
No 194
>PLN02591 tryptophan synthase
Probab=77.68 E-value=60 Score=30.14 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHHHhh----HHHHHHHHHHHHhhCCCCcEEEEecCCc-----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFEEFS----LPYLKQIVDTVKQTHPDLSLILYASGSG----- 290 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~ef~----~P~~k~l~~~i~~~~~~~~~~~H~cG~~----- 290 (386)
+...+.++++.+.|+|.|=+. ||.+. .|-...-+-+- ..-.-+++..+++.. .+|+++...-|.
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL-SCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC-CCCEEEEecccHHHHhH
Confidence 455677778899999987765 55542 22221111110 112223334444332 467777777663
Q ss_pred --chHHHHHhcCCCEEEc
Q 016596 291 --GLLERLALTGVDVVSL 306 (386)
Q Consensus 291 --~~l~~l~e~g~d~l~~ 306 (386)
.+++.+++.|++.+-+
T Consensus 95 ~~~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVV 112 (250)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 1356777899998754
No 195
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=77.48 E-value=62 Score=30.14 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHHHhh-----HHHHHHHHHHHHhhCCCCcEEEEecCCc----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFEEFS-----LPYLKQIVDTVKQTHPDLSLILYASGSG---- 290 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~ef~-----~P~~k~l~~~i~~~~~~~~~~~H~cG~~---- 290 (386)
+...+.++++.+.|+|.|=++ ||.+. .|-... .+-. ....-++++.+++...+.|+++.+--|.
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~-~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~ 102 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAAD-LRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhh
Confidence 344566677888999988765 45542 222211 1111 1233345555554312467553333443
Q ss_pred --c-hHHHHHhcCCCEEEc
Q 016596 291 --G-LLERLALTGVDVVSL 306 (386)
Q Consensus 291 --~-~l~~l~e~g~d~l~~ 306 (386)
. +++.+++.|++.+-+
T Consensus 103 G~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 2 467888899997754
No 196
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.44 E-value=1e+02 Score=32.57 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecC--C---cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC----------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDS--W---ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG---------- 288 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~--~---~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG---------- 288 (386)
-++-.+..++.+.++|.+.|=+... + -.+++++-|+. ++++-+.+. +.++..++-|
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~-----l~~l~~~~~----~~~l~~l~Rg~N~~gy~~yp 94 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWER-----LRKLKKALP----NTPLQMLLRGQNLVGYRHYP 94 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHH-----HHHHHHhCC----CCEEEEEecccccccccccc
Confidence 3455556777788889887654311 1 12677766654 344444432 3454555433
Q ss_pred -Ccc--hHHHHHhcCCCEEEc-CCCCCHHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 289 -SGG--LLERLALTGVDVVSL-DWTVDMAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 289 -~~~--~l~~l~e~g~d~l~~-d~~~dl~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
+.. .++...+.|++++.+ +...|+..+ .+..|. .+.|++.-..- .-|++.+.+.++++.+.+.+ .+
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad-~I 171 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA--HVQGTISYTTSPVHTIEKYVELAKELEEMGCD-SI 171 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EE
Confidence 111 256667889998865 333333222 223443 45566633222 45789999999888664323 33
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.| |+......|+.+..+++++++
T Consensus 172 ~i---~Dt~G~~~P~~~~~lv~~lk~ 194 (592)
T PRK09282 172 CI---KDMAGLLTPYAAYELVKALKE 194 (592)
T ss_pred EE---CCcCCCcCHHHHHHHHHHHHH
Confidence 33 566666778888899988875
No 197
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=77.35 E-value=57 Score=29.65 Aligned_cols=143 Identities=14% Similarity=0.182 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCc-C-CCCHHHHHHhhH-----HH--------HHHHHHHHHhhCCCCcEEEEecCCcc
Q 016596 230 KYVQYQADNGAQAVQIF--D-SWA-T-ELSPVDFEEFSL-----PY--------LKQIVDTVKQTHPDLSLILYASGSGG 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~--d-~~~-~-~iSp~~f~ef~~-----P~--------~k~l~~~i~~~~~~~~~~~H~cG~~~ 291 (386)
+.++.+.++|+|.+.+- | .+. + -++|+..+.+-. |. -.+.++.+.+.|.+ .+.+|..-...
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad-~i~~H~Ea~~~ 94 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGAS-MITFHVEASEH 94 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCC-EEEEcccCccc
Confidence 44556667899988752 2 121 2 367766554421 10 13456666666544 46788764322
Q ss_pred ---hHHHHHhcCCC-EEEcCCCCCHHHHHHHhC--CCeeEEecCCcCc----c-CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 292 ---LLERLALTGVD-VVSLDWTVDMAEGRRRLG--PDVAVQGNVDPGA----L-FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 292 ---~l~~l~e~g~d-~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~~----l-~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
.+..+.+.|.. ++.+.+.+++..++..+. +.+.+|+ ++|.. + ..+.+.++ ++++.++.. +-.+.+.
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt-V~PGfgGq~fi~~~lekI~-~l~~~~~~~-~~~~~I~ 171 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMS-VNPGFGGQSFIPHTLDKLR-AVRKMIDES-GRDIRLE 171 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE-ecCCCCCceecHhHHHHHH-HHHHHHHhc-CCCeeEE
Confidence 36888888876 456666677777766554 5677785 77753 1 23444333 334444432 1123333
Q ss_pred cCCCCCCCCcHHHHHHHHHH
Q 016596 361 LGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 361 ~gc~i~~~tp~Eni~a~~~a 380 (386)
.+ .++.+||+..+.++
T Consensus 172 vd----GGI~~eni~~l~~a 187 (220)
T PRK08883 172 ID----GGVKVDNIREIAEA 187 (220)
T ss_pred EE----CCCCHHHHHHHHHc
Confidence 33 34568888887764
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.20 E-value=11 Score=36.77 Aligned_cols=86 Identities=21% Similarity=0.123 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE------EecCCc--c-hHHHHHhcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL------YASGSG--G-LLERLALTG 300 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~------H~cG~~--~-~l~~l~e~g 300 (386)
+-.+..+++|||.|+++..--+.=++. .+|-.+.+++.++.+|++| +.+.+ |..+-. . .++.+.+.|
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a--~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRA--LNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred HHHHHHHHcCCCEEEeCCccccccccc--ccCCHHHHHHHHHHHHHcC--CeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 345567789999999987622222221 5677777999999999984 43332 322222 2 367888999
Q ss_pred CCEEEcCCCCCHHHHHHHh
Q 016596 301 VDVVSLDWTVDMAEGRRRL 319 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~ 319 (386)
+|.+-+...-=+.-+++..
T Consensus 93 vDaviv~Dpg~i~l~~e~~ 111 (347)
T COG0826 93 VDAVIVADPGLIMLARERG 111 (347)
T ss_pred CCEEEEcCHHHHHHHHHhC
Confidence 9988664322233444444
No 199
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=77.03 E-value=56 Score=29.46 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCEE-EEecC-CcCCCCHHHHHHhhHHH-------------HHHHHHHHHhhCCCCcEEEEecCCcc--h
Q 016596 230 KYVQYQADNGAQAV-QIFDS-WATELSPVDFEEFSLPY-------------LKQIVDTVKQTHPDLSLILYASGSGG--L 292 (386)
Q Consensus 230 ~~~~~~~e~G~d~i-~i~d~-~~~~iSp~~f~ef~~P~-------------~k~l~~~i~~~~~~~~~~~H~cG~~~--~ 292 (386)
+-+++..++|+|.+ +|+++ +.-.+|++.-++....- ..++.+.+.+. + +..+-.+|+.. .
T Consensus 13 eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~-ld~VQlHG~e~~~~ 89 (208)
T COG0135 13 EDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEEL--G-LDAVQLHGDEDPEY 89 (208)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--C-CCEEEECCCCCHHH
Confidence 34556678899976 45565 55578888877765433 23444555443 1 34566667654 4
Q ss_pred HHHHHhc-CCC---EEEcCCCC--------------------------------CHHHHHHH-hCCCeeEEecCCcCccC
Q 016596 293 LERLALT-GVD---VVSLDWTV--------------------------------DMAEGRRR-LGPDVAVQGNVDPGALF 335 (386)
Q Consensus 293 l~~l~e~-g~d---~l~~d~~~--------------------------------dl~e~~~~-~g~~~~l~G~vd~~~l~ 335 (386)
++.+.+. ++. ++++.... |...+... ......|.||++
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~~~~~~~~LAGGL~----- 164 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKLRLSKPVMLAGGLN----- 164 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccccccCCEEEECCCC-----
Confidence 6666653 233 23333222 33333332 333355555553
Q ss_pred CCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC-cHHHHHHHHHHHHhh
Q 016596 336 GSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT-PEENVAHFFEVAKAI 384 (386)
Q Consensus 336 gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t-p~Eni~a~~~a~~~y 384 (386)
||.|.+ .|+....-|.=+|+|-+..|+. .++.+++++++++.+
T Consensus 165 --p~NV~~----ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~~vk~~ 208 (208)
T COG0135 165 --PDNVAE----AIALGPPYGVDVSSGVESSPGIKDPAKVKAFFEAVKRA 208 (208)
T ss_pred --HHHHHH----HHHhcCCceEEeccccccCCCCCCHHHHHHHHHHHhcC
Confidence 455544 4444443466688888887665 889999999999864
No 200
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=76.99 E-value=42 Score=30.36 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC-C-CE-EEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCH
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG-V-DV-VSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSK 338 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g-~-d~-l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~ 338 (386)
.+.++.+++.+.+. +.|+++|+.+... .++.+.++| . .+ ++... .+...+++.....+-+ .+++..+..++
T Consensus 107 ~~~~~~~~~~a~e~--~~pv~iH~~~~~~~~~~l~~~~~~~~~~i~H~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~~~ 181 (251)
T cd01310 107 KEVFRAQLELAKEL--NLPVVIHSRDAHEDVLEILKEYGPPKRGVFHCFS-GSAEEAKELLDLGFYI--SISGIVTFKNA 181 (251)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEeeCchHHHHHHHHhcCCCCCEEEEccC-CCHHHHHHHHHcCCEE--EeeeeeccCCC
Confidence 46677788888886 6899999766555 468888886 2 33 34432 4566666655433222 13332233333
Q ss_pred HHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 339 DFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 339 eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+ +++++++..+..+++++++..
T Consensus 182 ~----~~~~~~~~~~~dril~~TD~p 203 (251)
T cd01310 182 N----ELREVVKEIPLERLLLETDSP 203 (251)
T ss_pred H----HHHHHHHhCChHHEEEcccCC
Confidence 3 344555565545888888753
No 201
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=76.93 E-value=30 Score=32.04 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCEEEEec-CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCcc-hHHHHHhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFD-SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSGG-LLERLALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d-~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~~-~l~~l~e~g~d 302 (386)
.+-++.+.+.|+|++.++- +-.+-+. .+..+++++..+ +.++.+|- |-+.. -++.++++|++
T Consensus 76 ~~di~~~~~~GadGvV~G~L~~dg~vD--------~~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~al~~l~~lG~~ 143 (248)
T PRK11572 76 LEDIATVRELGFPGLVTGVLDVDGHVD--------MPRMRKIMAAAG----PLAVTFHRAFDMCANPLNALKQLADLGVA 143 (248)
T ss_pred HHHHHHHHHcCCCEEEEeeECCCCCcC--------HHHHHHHHHHhc----CCceEEechhhccCCHHHHHHHHHHcCCC
Confidence 3445567789999988753 2222344 346677788775 46889995 33333 38999999997
Q ss_pred EE-EcCCCC-------CHHHHHHHhCCCe-eEEecCCc
Q 016596 303 VV-SLDWTV-------DMAEGRRRLGPDV-AVQGNVDP 331 (386)
Q Consensus 303 ~l-~~d~~~-------dl~e~~~~~g~~~-~l~G~vd~ 331 (386)
-+ .-.... .++++.+..++++ ..-|||.+
T Consensus 144 rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~ 181 (248)
T PRK11572 144 RILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRL 181 (248)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCH
Confidence 55 322222 3445555556553 33556654
No 202
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=76.80 E-value=52 Score=28.93 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE--EecCCcchHHHHHhcCCCEEEcCC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL--YASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~--H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
.++.+.++|+|.+.+.... +++ ..+++++.++++ |.+.++ +.+.+..-.-.....|+|.+.+..
T Consensus 69 ~~~~~~~aGad~i~~h~~~----~~~--------~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~ 134 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA----PLS--------TIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR 134 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC----CHH--------HHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcC
Confidence 3577889999998875432 121 245577778776 566664 666655432236667888764421
Q ss_pred ---------CCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 309 ---------TVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 309 ---------~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
....+.+++.. .-.+...|||++ +. ++++++.+ -.++++++.
T Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~-------~~----i~~~~~~G-ad~vvvGsa 188 (202)
T cd04726 135 GIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITP-------DT----LPEFKKAG-ADIVIVGRA 188 (202)
T ss_pred cccccccCCCCCHHHHHHHHhhcCCCEEEECCcCH-------HH----HHHHHhcC-CCEEEEeeh
Confidence 23455555544 345777888854 22 44555543 236666654
No 203
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=76.76 E-value=31 Score=31.22 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHHhc
Q 016596 223 KFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLALT 299 (386)
Q Consensus 223 ~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~e~ 299 (386)
+++|.-.-.++...++|||.+.+.-.. . .+..++.++..+++ |+.+.+-+=|++++ ...+.++
T Consensus 64 Kt~D~G~~e~~ma~~aGAd~~tV~g~A----~--------~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~ 129 (217)
T COG0269 64 KTADAGAIEARMAFEAGADWVTVLGAA----D--------DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKEL 129 (217)
T ss_pred eecchhHHHHHHHHHcCCCEEEEEecC----C--------HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHh
Confidence 455666666778889999987763211 1 12456677888887 46788888898863 5666779
Q ss_pred CCCEEEc----CCC--------CCHHHHHHHhC--CCeeEEecCCc
Q 016596 300 GVDVVSL----DWT--------VDMAEGRRRLG--PDVAVQGNVDP 331 (386)
Q Consensus 300 g~d~l~~----d~~--------~dl~e~~~~~g--~~~~l~G~vd~ 331 (386)
|++.+.+ |.. .|+.++|+... -++++.|||.|
T Consensus 130 gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~ 175 (217)
T COG0269 130 GVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITP 175 (217)
T ss_pred CCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCH
Confidence 9997643 211 36778888775 58999999976
No 204
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=76.71 E-value=52 Score=31.61 Aligned_cols=61 Identities=25% Similarity=0.183 Sum_probs=35.6
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE--EcC
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV--SLD 307 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l--~~d 307 (386)
+.|+..|.+.. --.++.++ +.++++.+++..+...+.+.+.|... .++.+.+.|++.+ |+|
T Consensus 63 ~~gi~~I~~tG-GEPll~~~---------l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISld 127 (331)
T PRK00164 63 ALGVRKVRLTG-GEPLLRKD---------LEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLD 127 (331)
T ss_pred HCCCCEEEEEC-CCCcCccC---------HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEec
Confidence 44888777643 11245432 34566666664222356677777542 4678888898855 454
No 205
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=76.56 E-value=17 Score=37.71 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..+.++.+.++|++.|.++|+.+ .+.|..+.+++.-.-+ .+ ++++-+|++.+..+ + ..+ .+.|++.
T Consensus 160 l~~~~~~~~~~Gad~i~l~DTvG-~~~P~~v~~li~~l~~----~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~~ 229 (524)
T PRK12344 160 ALATLKAAAEAGADWVVLCDTNG-GTLPHEVAEIVAEVRA----AP-----GVPLGIHAHNDSGCAVANSLAAVEAGARQ 229 (524)
T ss_pred HHHHHHHHHhCCCCeEEEccCCC-CcCHHHHHHHHHHHHH----hc-----CCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 33444455689999999888765 6888888776643322 22 35889999988652 2 222 4679988
Q ss_pred EEc-----CC---CCCHHHHHHHh
Q 016596 304 VSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 304 l~~-----d~---~~dl~e~~~~~ 319 (386)
++. .+ ..+++++.-.+
T Consensus 230 Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 230 VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred EEEecccccccccCcCHHHHHHHH
Confidence 743 22 25777766444
No 206
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=76.53 E-value=79 Score=30.91 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCc-c--hHHHHHhcCCCEEEc
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSG-G--LLERLALTGVDVVSL 306 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~ 306 (386)
.++-|+++....++++++..+++ ++.+++.. .+..+.+-+..+. + .++.+.+.|++-+++
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~l--------l~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDIL--------LSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISL 119 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHH--------HHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEE
Confidence 46778888888889999987553 33333321 1222333333332 2 478899999987765
No 207
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=76.52 E-value=61 Score=29.56 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCc-C-CCCHHHHHHhhH-----HH--------HHHHHHHHHhhCCCCcEEEEecCCcc
Q 016596 230 KYVQYQADNGAQAVQIF--D-SWA-T-ELSPVDFEEFSL-----PY--------LKQIVDTVKQTHPDLSLILYASGSGG 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~--d-~~~-~-~iSp~~f~ef~~-----P~--------~k~l~~~i~~~~~~~~~~~H~cG~~~ 291 (386)
+.++.+.++|+|.+.+- | .+. + -++|+..+.+-. |. -.+.++.+.+.|.+ .+.+|..-...
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad-~I~~H~Ea~~~ 98 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGAT-TISFHPEASRH 98 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCC-EEEEcccCccc
Confidence 34555667899988752 2 121 2 367765444321 10 23455666666544 46788774332
Q ss_pred ---hHHHHHhcCCC-EEEcCCCCCHHHHHHHhC--CCeeEEecCCcC
Q 016596 292 ---LLERLALTGVD-VVSLDWTVDMAEGRRRLG--PDVAVQGNVDPG 332 (386)
Q Consensus 292 ---~l~~l~e~g~d-~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~ 332 (386)
.+..+.+.|+. ++.+...++++.+...++ +.+.+|. |+|.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt-V~PG 144 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS-VNPG 144 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEE-ECCC
Confidence 36888888865 466666677777666554 5577775 7775
No 208
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=76.45 E-value=16 Score=36.00 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l 304 (386)
.+.++.+.++|++.|.++|+.+ .+.|..+.+++. .+++.. ++++-+|++-+... + ..+ .+.|++.+
T Consensus 144 ~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~li~--------~l~~~~-~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 144 IKVFKRAEEAGADRINIADTVG-VLTPQKMEELIK--------KLKENV-KLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-ccCHHHHHHHHH--------HHhccc-CceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 3445556688999999999875 577877665544 333332 36788999988652 2 222 35698877
Q ss_pred E
Q 016596 305 S 305 (386)
Q Consensus 305 ~ 305 (386)
+
T Consensus 214 d 214 (363)
T TIGR02090 214 H 214 (363)
T ss_pred E
Confidence 4
No 209
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=76.38 E-value=58 Score=29.26 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCEEE-EecC-CcCCCCHHHHHHhhH---HH-----------HHHHHHHHHhhCCCCcEEEEecCCcc--
Q 016596 230 KYVQYQADNGAQAVQ-IFDS-WATELSPVDFEEFSL---PY-----------LKQIVDTVKQTHPDLSLILYASGSGG-- 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~-i~d~-~~~~iSp~~f~ef~~---P~-----------~k~l~~~i~~~~~~~~~~~H~cG~~~-- 291 (386)
+-++...++|||.+- ++.+ +.-.+||+..++... |. ..++.+.+.+. + +-+++.+|+..
T Consensus 12 eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~--~-~d~vQLHG~e~~~ 88 (207)
T PRK13958 12 KDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNT--S-INTIQLHGTESID 88 (207)
T ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhC--C-CCEEEECCCCCHH
Confidence 345566788999763 3433 344899999887764 22 23455555543 2 34667777654
Q ss_pred hHHHHHhc-C-CCEE-----------------------EcCCC----------CCHHHHHHHhCCCeeEEecCCcCccCC
Q 016596 292 LLERLALT-G-VDVV-----------------------SLDWT----------VDMAEGRRRLGPDVAVQGNVDPGALFG 336 (386)
Q Consensus 292 ~l~~l~e~-g-~d~l-----------------------~~d~~----------~dl~e~~~~~g~~~~l~G~vd~~~l~g 336 (386)
.+..+.+. + +.++ -+|.. .|...+++.....+.|.||+
T Consensus 89 ~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~~~~~~p~iLAGGL------- 161 (207)
T PRK13958 89 FIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHIKDIPYLIAGGI------- 161 (207)
T ss_pred HHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhhhccCCCEEEECCC-------
Confidence 34444431 1 2222 22210 12222222111123444444
Q ss_pred CHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 337 SKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 337 t~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
|||.|.+. ..+ ..+..|.=+++|-+.+.--.++.++++++++|+.
T Consensus 162 ~peNV~~a-~~~--~~~p~gVDvsSGVE~~G~KD~~ki~~f~~~v~~~ 206 (207)
T PRK13958 162 NSENIQTV-EQL--KLSHQGYDIASGIETNGRKDINKMTAIVNIVKGD 206 (207)
T ss_pred CHHHHHHH-Hhc--CCCCCEEEcccccCCCCCCCHHHHHHHHHHHHhc
Confidence 45666552 211 2233466678887776446899999999999864
No 210
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=76.37 E-value=16 Score=37.59 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
+++.++++.+.++|++.|.++|+.+ .+.|..+.+++. .+.+.+... +++++-+|++.+..+ -..+ .+.|+
T Consensus 239 efl~~~~~~a~~~Gad~I~l~DTvG-~~tP~~v~~lV~----~l~~~~~~~-~~i~I~~H~HND~GlAvANslaAi~aGa 312 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIADTVG-INMPHEFGELVT----YVKANTPGI-DDIVFSVHCHNDLGLATANTIAGICAGA 312 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHH----HHHHHhccc-cCceeEecccCCcChHHHHHHHHHHhCC
Confidence 4456677778889999999988776 577877766553 222333211 135788999887652 2333 36798
Q ss_pred CEEEc-----CCC---CCHHHHHHHh
Q 016596 302 DVVSL-----DWT---VDMAEGRRRL 319 (386)
Q Consensus 302 d~l~~-----d~~---~dl~e~~~~~ 319 (386)
+.++. .+. .+++++...+
T Consensus 313 ~~Vd~Tv~GiGERaGNa~lEevv~~L 338 (503)
T PLN03228 313 RQVEVTINGIGERSGNASLEEVVMAL 338 (503)
T ss_pred CEEEEeccccccccCCccHHHHHHHH
Confidence 88753 222 5676655544
No 211
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=76.28 E-value=52 Score=31.78 Aligned_cols=121 Identities=18% Similarity=0.126 Sum_probs=81.6
Q ss_pred HhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-----hHHHHHhcCCCEEEcCC---CCCHHHHHHHhCCCeeEEecCCc
Q 016596 260 EFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-----LLERLALTGVDVVSLDW---TVDMAEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 260 ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-----~l~~l~e~g~d~l~~d~---~~dl~e~~~~~g~~~~l~G~vd~ 331 (386)
.|+....+.+-+.+.++ |.-++++.+.+.. .++.+.+.++|++-+.. ..+..+.....+-.+++.+...+
T Consensus 71 ~~~~~i~~gi~~~~~~~--gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~ 148 (333)
T COG1609 71 PFFAEILKGIEEAAREA--GYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP 148 (333)
T ss_pred chHHHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCc
Confidence 57777778888888887 5677888887631 26778888999775433 22344455555667888887544
Q ss_pred C--c--c-CCCHHHHHHHHHHHHHHcCC-CCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 332 G--A--L-FGSKDFITNRINDTVRKAGR-WKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 332 ~--~--l-~gt~eev~~~v~~~i~~~~~-~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
. . . ....+-.+..++.+++.+.. -+||-++. ...+..+.+..+.++.++.|
T Consensus 149 ~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~---~~~~~~~R~~Gf~~al~~~~ 205 (333)
T COG1609 149 GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPL---DSSASRERLEGYRAALREAG 205 (333)
T ss_pred cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCC---ccccHhHHHHHHHHHHHHCC
Confidence 2 1 2 46666777788888887643 34554433 44567888999999998876
No 212
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.06 E-value=12 Score=35.27 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|+|++ |. +||++-+ ++++.+++.+.+..+.+-..|+.+ .+..++++|+|+++..
T Consensus 193 eea~~a~~agaDiI~L-Dn----~~~e~l~--------~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 193 EDALKAAKAGADIIML-DN----MTPEEIR--------EVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred HHHHHHHHcCcCEEEE-CC----CCHHHHH--------HHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 3455667889998874 44 3677544 445555554211245778889887 3899999999999875
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 260 a 260 (278)
T PRK08385 260 A 260 (278)
T ss_pred h
Confidence 3
No 213
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=75.85 E-value=22 Score=33.80 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDV 303 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~ 303 (386)
+-.++.++++.++|||++++. +..-+++..++++ +.++...+..|+++.. +... -++.|.++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~~--------~~~~~~~p~~pl~~~~-~~~~~~~~~eL~~lG~~~ 236 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIH---SRKKDPDEILEFA--------RRFRNHYPRTPLVIVP-TSYYTTPTDEFRDAGISV 236 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHHH--------HHhhhhCCCCCEEEec-CCCCCCCHHHHHHcCCCE
Confidence 345566788999999999974 2235666655543 3343322334654433 3322 378999999998
Q ss_pred EEcCC
Q 016596 304 VSLDW 308 (386)
Q Consensus 304 l~~d~ 308 (386)
++...
T Consensus 237 v~~~~ 241 (285)
T TIGR02320 237 VIYAN 241 (285)
T ss_pred EEEhH
Confidence 87754
No 214
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.78 E-value=56 Score=29.28 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~ 306 (386)
.++++.+.++||+++.+.|.-..+ =+++ .++.+++.- ++|+.+.--+... .++.+.+.|+|.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~------------~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLE------------DLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHH------------HHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 356777889999999987643321 2222 233333321 4676643211222 367788889888875
Q ss_pred C
Q 016596 307 D 307 (386)
Q Consensus 307 d 307 (386)
.
T Consensus 101 ~ 101 (217)
T cd00331 101 I 101 (217)
T ss_pred e
Confidence 4
No 215
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=75.75 E-value=77 Score=30.35 Aligned_cols=84 Identities=23% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCEEEEecCCc----------CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcC
Q 016596 231 YVQYQADNGAQAVQIFDSWA----------TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG 300 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~----------~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g 300 (386)
.++.+++.|++.|-++-+.. ..++++ .++++++.++++ |.++.+|+++... +....+.|
T Consensus 125 ~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e--------~l~~~~~~A~~~--g~~v~~H~~~~~~-i~~~l~~G 193 (342)
T cd01299 125 AVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEE--------ELRAIVDEAHKA--GLYVAAHAYGAEA-IRRAIRAG 193 (342)
T ss_pred HHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHH--------HHHHHHHHHHHc--CCEEEEEeCCHHH-HHHHHHcC
Confidence 34446678999886654221 134544 445677888887 6799999987543 45667789
Q ss_pred CCEEEcCCCCCHHHHHHHhCCCeeE
Q 016596 301 VDVVSLDWTVDMAEGRRRLGPDVAV 325 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~g~~~~l 325 (386)
++.+.=....+-..+++.-..++.+
T Consensus 194 ~~~i~H~~~~~~~~~~~l~~~g~~~ 218 (342)
T cd01299 194 VDTIEHGFLIDDETIELMKEKGIFL 218 (342)
T ss_pred CCEEeecCCCCHHHHHHHHHCCcEE
Confidence 8876322234444444433334444
No 216
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=75.53 E-value=75 Score=30.15 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++.++...+.|+|++.+.-|...-.|+ +=+.-|++.+.++.. +.|++++.+
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~----~~l~~~f~~ia~a~~----~lpv~iYn~ 135 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQ----EALYDHFAEVADAVP----DFPIIIYNI 135 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCH----HHHHHHHHHHHHhcc----CCCEEEEeC
Confidence 344555567788888876665333333 334556677777652 246666643
No 217
>PLN02389 biotin synthase
Probab=75.52 E-value=89 Score=30.97 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
++.++...+.|+..+.+...+.+...++. .++++.++++.+++. +.. +.-+.|... .+..|.+.|++.++.
T Consensus 122 l~~a~~~~~~G~~~~~ivts~rg~~~e~~----~~e~i~eiir~ik~~--~l~-i~~s~G~l~~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 122 LEAAKRAKEAGSTRFCMGAAWRDTVGRKT----NFNQILEYVKEIRGM--GME-VCCTLGMLEKEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCCChh----HHHHHHHHHHHHhcC--CcE-EEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 33445566779998877655444444432 246777888888864 333 223446544 478899999998855
No 218
>PLN02321 2-isopropylmalate synthase
Probab=75.47 E-value=78 Score=33.63 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEE 260 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~e 260 (386)
++--+++++.+.+.|++.|=++-| +.||+.|+.
T Consensus 107 ~eeKl~Ia~~L~~lGVd~IEvGfP---~~Sp~D~e~ 139 (632)
T PLN02321 107 SKEKLDIARQLAKLGVDIIEAGFP---IASPDDLEA 139 (632)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCc---CCCccHHHH
Confidence 344456677788999998875322 488887665
No 219
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.45 E-value=16 Score=36.53 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEec-CCcCccCCCHHHHHHH
Q 016596 266 LKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGN-VDPGALFGSKDFITNR 344 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~-vd~~~l~gt~eev~~~ 344 (386)
.+++++.+++. |.|+.+|..+.. -+...+++|++.+.-....|-..++..-.+. .|- + |.++.++.-++++.
T Consensus 222 ~~~~l~~a~~~--g~~v~~HA~~~~-g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~---~g~~~-~~l~p~~~~~l~e~ 294 (406)
T COG1228 222 IRAVLAAALKA--GIPVKAHAHGAD-GIKLAIRLGAKSAEHGTLLDHETAALLAEKG---AGTPV-PVLLPRTKFELREL 294 (406)
T ss_pred HHHHHHHHHHC--CCceEEEecccc-hHHHHHHhCcceehhhhhcCHhHHHHHhhcc---CCCcc-ccccchhhhhhhcc
Confidence 37788888887 689999999877 3456677887766433334433333222211 232 4 44445665666555
Q ss_pred HHHHHHHcC--CCCeEEecCCCCCCC
Q 016596 345 INDTVRKAG--RWKHILNLGHGIKVG 368 (386)
Q Consensus 345 v~~~i~~~~--~~g~Ils~gc~i~~~ 368 (386)
..+-.+.+. |-.+.++++++..+.
T Consensus 295 ~~~~~~~l~~~GV~vai~TD~~~~~~ 320 (406)
T COG1228 295 DYKPARKLIDAGVKVAIGTDHNPGTS 320 (406)
T ss_pred cchhHHHHHHCCCEEEEEcCCCCCch
Confidence 444444333 456777777776553
No 220
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.37 E-value=26 Score=34.15 Aligned_cols=86 Identities=21% Similarity=0.372 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHHH---Hh------hHHHHHHHHHHHHhhCC-CCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDFE---EF------SLPYLKQIVDTVKQTHP-DLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f~---ef------~~P~~k~l~~~i~~~~~-~~~~~~H~ 286 (386)
++.+.+-..+.++...++|.|+|.+.-.-+ .|+||..=+ +| =.-+..++++++++..+ +.++.+=+
T Consensus 136 I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl 215 (343)
T cd04734 136 IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRI 215 (343)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 344444444566667789999998865322 367774422 11 13566778888887632 23444433
Q ss_pred cC-------Cc---c--hHHHHHhcC-CCEEEc
Q 016596 287 SG-------SG---G--LLERLALTG-VDVVSL 306 (386)
Q Consensus 287 cG-------~~---~--~l~~l~e~g-~d~l~~ 306 (386)
.. .. . +...+.+.| +|.+++
T Consensus 216 ~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 216 SGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred ehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 32 11 1 135666788 898876
No 221
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=75.24 E-value=1.4e+02 Score=34.36 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHh
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL 298 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e 298 (386)
.+.+.=.+...+.++.|++.||++|-+.-+. ..++.+.=-+.+.|.+..+ .+.. ++|+.+-+. ++..++.-++
T Consensus 377 ~i~~~d~~~al~~A~~qve~GA~iIDVn~g~-~~id~~eem~rvv~~i~~~----~~~~-~vPlsIDS~-~~~ViEaaLk 449 (1229)
T PRK09490 377 LIKEEDYDEALDVARQQVENGAQIIDINMDE-GMLDSEAAMVRFLNLIASE----PDIA-RVPIMIDSS-KWEVIEAGLK 449 (1229)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHHHHHHHHHhh----hccC-CceEEEeCC-cHHHHHHHHh
Confidence 3344556777788889999999999886432 2456544333334433332 2211 356544331 2234666666
Q ss_pred c--CCCEEE-cCCC---C---CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH----cC--CCCeEEecCC
Q 016596 299 T--GVDVVS-LDWT---V---DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK----AG--RWKHILNLGH 363 (386)
Q Consensus 299 ~--g~d~l~-~d~~---~---dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~----~~--~~g~Ils~gc 363 (386)
. |..++| +... . .+..+.+++|-.+++| -+|...+-.|.|+-.+.++++++. .| ....|+-|..
T Consensus 450 ~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m-~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv 528 (1229)
T PRK09490 450 CIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVM-AFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFDPNI 528 (1229)
T ss_pred hcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCCc
Confidence 5 888885 3221 1 2566778898876665 476655556777777777777764 34 3567776542
Q ss_pred CCCCCCcHH----HHHHHHHHHH
Q 016596 364 GIKVGTPEE----NVAHFFEVAK 382 (386)
Q Consensus 364 ~i~~~tp~E----ni~a~~~a~~ 382 (386)
++-.|-.| +....+++.|
T Consensus 529 -~~v~t~~ee~~~~~~~~leair 550 (1229)
T PRK09490 529 -FAVATGIEEHNNYAVDFIEATR 550 (1229)
T ss_pred -ceeecChHHHHHHHHHHHHHHH
Confidence 23444433 3344455554
No 222
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=74.97 E-value=78 Score=31.10 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=37.4
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC---CCCcEEEEecCC-cc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH---PDLSLILYASGS-GG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~---~~~~~~~H~cG~-~~--~l~~l~e~g~d~l~~d 307 (386)
.++.|++++...++++++..+++ ++.+++.. ++..+.+-+..+ .+ .++.+.+.|++-+++.
T Consensus 59 ~i~~i~~GGGTPs~l~~~~l~~l--------l~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslG 125 (375)
T PRK05628 59 PVSTVFVGGGTPSLLGAEGLARV--------LDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLG 125 (375)
T ss_pred ceeEEEeCCCccccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEe
Confidence 36788888888889999776654 44444321 112222222222 23 5889999999988763
No 223
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=74.94 E-value=7.4 Score=37.63 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=66.2
Q ss_pred CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHHhcC--CCEEEcCCC--------CCHHHHHH
Q 016596 252 ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLALTG--VDVVSLDWT--------VDMAEGRR 317 (386)
Q Consensus 252 ~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~e~g--~d~l~~d~~--------~dl~e~~~ 317 (386)
.++++.+.+|+....+ +. +..+.+ +-|-.. .++.+.+.+ +|++-+|.. .+++.+|+
T Consensus 77 ~~~~e~~~~~v~~~~~-------~~--~~~~~v-svG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 77 HYSVDEWKAFATNSSP-------DC--LQNVAV-SSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred CCCHHHHHHHHHhhcc-------cc--cceEEE-EeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 5799999988764333 11 112233 445332 467788774 898887643 25899999
Q ss_pred HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEe--cC--CCC--CCCCcHHHHHHHHHHHH
Q 016596 318 RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILN--LG--HGI--KVGTPEENVAHFFEVAK 382 (386)
Q Consensus 318 ~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils--~g--c~i--~~~tp~Eni~a~~~a~~ 382 (386)
.+++...+.||| .|+|++ +++++.+.+ +..++ || |+. ..+++.-.+.|+.++++
T Consensus 147 ~~p~~~viaGNV------~T~e~a----~~Li~aGAD-~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 147 AFPEHTIMAGNV------VTGEMV----EELILSGAD-IVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred hCCCCeEEEecc------cCHHHH----HHHHHcCCC-EEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 999888999998 455554 455555434 45554 33 443 23444335666655554
No 224
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=74.83 E-value=35 Score=32.98 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
..+.+++++++|++.|.+.-..+ ++ +...++++.+++.+++++++...+.+......+.+.|+|++.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G---~~--------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG---HS--------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC---Cc--------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 35667788899999887633222 12 2334556666765433555553333323457788999998865
No 225
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=74.79 E-value=67 Score=29.21 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCc-C-CCCHHHHHHhhH-------------HHHHHHHHHHHhhCCCCcEEEEecCCcc
Q 016596 230 KYVQYQADNGAQAVQIF--D-SWA-T-ELSPVDFEEFSL-------------PYLKQIVDTVKQTHPDLSLILYASGSGG 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~--d-~~~-~-~iSp~~f~ef~~-------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~ 291 (386)
+.++++.++|+|.+.+- | .+. + -++|...+..-. +. .+.++.+.+.|++ .+.+|..-...
T Consensus 20 ~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad-~It~H~E~~~~ 97 (220)
T COG0036 20 EELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGAD-IITFHAEATEH 97 (220)
T ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCC-EEEEEeccCcC
Confidence 44556778899988752 2 121 1 355554443211 11 3445555555433 46788873322
Q ss_pred ---hHHHHHhcCCC-EEEcCCCCCHHHHHHHhC--CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCCeEEecCC
Q 016596 292 ---LLERLALTGVD-VVSLDWTVDMAEGRRRLG--PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWKHILNLGH 363 (386)
Q Consensus 292 ---~l~~l~e~g~d-~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~gc 363 (386)
.+..+.+.|+. ++.+.+.+.+..++..+. +-+.+|. |+|..= ..=-+++-+.++++-+... ++.+.+.
T Consensus 98 ~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMs-VnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie--- 173 (220)
T COG0036 98 IHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMS-VNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE--- 173 (220)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEe-ECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE---
Confidence 26777888876 456666666666655544 3355564 888642 1112233333333333222 2244444
Q ss_pred CCCCCCcHHHHHHHHHH
Q 016596 364 GIKVGTPEENVAHFFEV 380 (386)
Q Consensus 364 ~i~~~tp~Eni~a~~~a 380 (386)
+-.++..||++.+.++
T Consensus 174 -VDGGI~~~t~~~~~~A 189 (220)
T COG0036 174 -VDGGINLETIKQLAAA 189 (220)
T ss_pred -EeCCcCHHHHHHHHHc
Confidence 4445577777776654
No 226
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=74.77 E-value=1e+02 Score=32.04 Aligned_cols=140 Identities=13% Similarity=0.174 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-cCCc------c-hHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-SGSG------G-LLERL 296 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-cG~~------~-~l~~l 296 (386)
++--++.++.+.+.|++.|=++-| ..||+.|+ +.+++.+.-.+ +..+..++ |-.. . -++..
T Consensus 22 ~eeKl~Ia~~L~~~GVd~IE~G~p---~~s~~d~~-----~v~~i~~~~~~---~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 22 LEDKIRIAERLDDLGIHYIEGGWP---GANPKDVQ-----FFWQLKEMNFK---NAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCChHHHH-----HHHHHHHhCCC---CcEEEEEeeecCCCCCCchHHHHHHH
Confidence 344567778888999998865333 36787655 44555432111 23444554 2111 1 26788
Q ss_pred HhcCCCEEEcCCC-----------CCHHHHH----------HHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHH
Q 016596 297 ALTGVDVVSLDWT-----------VDMAEGR----------RRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRK 351 (386)
Q Consensus 297 ~e~g~d~l~~d~~-----------~dl~e~~----------~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~ 351 (386)
.+.|.+.+++-.. .+.+++. +..|.++. +++..+ ..+++.+.+-++.+.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~----~~~e~f~D~~r~~~~~l~~~~~~a~~a 166 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI----YDAEHFFDGYKANPEYALATLATAQQA 166 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE----EEeeeeeecccCCHHHHHHHHHHHHhC
Confidence 8888887765321 2222222 22233322 222211 35677777777777654
Q ss_pred cCCCCeEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 352 AGRWKHILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 352 ~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+.+ .+.|. +.-.-+.|+.+..+++.+++
T Consensus 167 Gad-~i~i~---DTvG~~~P~~v~~li~~l~~ 194 (526)
T TIGR00977 167 GAD-WLVLC---DTNGGTLPHEISEITTKVKR 194 (526)
T ss_pred CCC-eEEEe---cCCCCcCHHHHHHHHHHHHH
Confidence 323 44443 22223445566677766654
No 227
>PLN02705 beta-amylase
Probab=74.54 E-value=3.6 Score=42.50 Aligned_cols=59 Identities=8% Similarity=0.200 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC--cEEEEecCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL--SLILYASGS 289 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~--~~~~H~cG~ 289 (386)
..++++..+|+|+|++ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+ ...+|-||.
T Consensus 272 a~L~aLK~aGVdGVmv-DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 272 QELSHMKSLNVDGVVV-DCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHcCCCEEEE-eeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 3445677899999986 6554433322235578999999999999974222 134687764
No 228
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=74.27 E-value=71 Score=29.26 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=77.0
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCc-C-CCCHHHHHHhhH--HH--------HHHHHHHHHhhCCCCcEEEEecCCcc---
Q 016596 230 KYVQYQADNGAQAVQIF--D-SWA-T-ELSPVDFEEFSL--PY--------LKQIVDTVKQTHPDLSLILYASGSGG--- 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~--d-~~~-~-~iSp~~f~ef~~--P~--------~k~l~~~i~~~~~~~~~~~H~cG~~~--- 291 (386)
+.++.+.++|+|.+.+- | .+. + -++|+.-+.+-. |. -.+.++.+.+.|.+ .+.+|..-...
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~~~DvHLMv~~P~~~i~~~~~aGad-~It~H~Ea~~~~~~ 107 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHCFKDVHLMVRDQFEVAKACVAAGAD-IVTLQVEQTHDLAL 107 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCC-EEEEcccCcccHHH
Confidence 34556677899988752 2 111 1 356655554411 10 12355666666544 56788774332
Q ss_pred hHHHHHhcCC--C-EEEcCCCCCHHHHHHHhC--CCeeEEecCCcCc----c-CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 292 LLERLALTGV--D-VVSLDWTVDMAEGRRRLG--PDVAVQGNVDPGA----L-FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 292 ~l~~l~e~g~--d-~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~~----l-~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
.+..+.+.|. . ++.+.+.++++.+...++ +.+.+|. |+|.. + ..+-+.|+ ++++.++.. +-.+.+..
T Consensus 108 ~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMt-V~PGfgGQ~f~~~~l~KI~-~lr~~~~~~-~~~~~IeV 184 (228)
T PRK08091 108 TIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILT-LDPRTGTKAPSDLILDRVI-QVENRLGNR-RVEKLISI 184 (228)
T ss_pred HHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEE-ECCCCCCccccHHHHHHHH-HHHHHHHhc-CCCceEEE
Confidence 3688888886 3 566677677777776654 5577775 77753 1 23333332 333444332 22344443
Q ss_pred CCCCCCCCcHHHHHHHHHH
Q 016596 362 GHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a 380 (386)
+ .++..||++.+.++
T Consensus 185 D----GGI~~~ti~~l~~a 199 (228)
T PRK08091 185 D----GSMTLELASYLKQH 199 (228)
T ss_pred E----CCCCHHHHHHHHHC
Confidence 3 34456677665553
No 229
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=74.21 E-value=81 Score=30.68 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
.++++++.+.++|++.+- +..+-..=||.-|+.+...-++.+.+..++. |.+++.=.. +...++.+.++ +|++-+
T Consensus 108 ~~~~~A~~lk~~ga~~~r-~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~--Gl~v~tev~-d~~~~~~l~~~-vd~lqI 182 (335)
T PRK08673 108 QILEIARAVKEAGAQILR-GGAFKPRTSPYSFQGLGEEGLKLLAEAREET--GLPIVTEVM-DPRDVELVAEY-VDILQI 182 (335)
T ss_pred HHHHHHHHHHHhchhhcc-CcEecCCCCCcccccccHHHHHHHHHHHHHc--CCcEEEeeC-CHHHHHHHHHh-CCeEEE
Confidence 344556666677766321 1222234566677777777777777777776 567544332 22246888888 888877
Q ss_pred CCC--CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 307 DWT--VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 307 d~~--~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
... .+..-+++ .+.. +. |..| .+|.+|+...+..+... |+...+|.
T Consensus 183 gAr~~~N~~LL~~-va~~-----~k-PViLk~G~~~ti~E~l~A~e~i~~~-GN~~viL~ 234 (335)
T PRK08673 183 GARNMQNFDLLKE-VGKT-----NK-PVLLKRGMSATIEEWLMAAEYILAE-GNPNVILC 234 (335)
T ss_pred CcccccCHHHHHH-HHcC-----CC-cEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEE
Confidence 543 34443333 3321 11 3333 46899999998887654 33455554
No 230
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=74.07 E-value=20 Score=33.08 Aligned_cols=64 Identities=27% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
.++-++++.++|||.||+.- .-+.+.. +++.+.+ ++|+.+..-+...-++.+.++|+..+++.
T Consensus 157 aI~R~~aY~eAGAD~ifi~~----~~~~~~i--------~~~~~~~-----~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~ 219 (238)
T PF13714_consen 157 AIERAKAYAEAGADMIFIPG----LQSEEEI--------ERIVKAV-----DGPLNVNPGPGTLSAEELAELGVKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHTT-SEEEETT----SSSHHHH--------HHHHHHH-----SSEEEEETTSSSS-HHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCCEEEeCC----CCCHHHH--------HHHHHhc-----CCCEEEEcCCCCCCHHHHHHCCCcEEEEc
Confidence 34556778899999998632 2455443 3444555 24766666333324899999999998876
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 220 ~ 220 (238)
T PF13714_consen 220 N 220 (238)
T ss_dssp S
T ss_pred H
Confidence 5
No 231
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.96 E-value=36 Score=31.23 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=48.8
Q ss_pred hHHHHHhcCCCEEEcCC--CCCHHHHHHHhCC-CeeEEe-cCCcCc---------c-CCCHHHHHHHHHHHHHHcC--CC
Q 016596 292 LLERLALTGVDVVSLDW--TVDMAEGRRRLGP-DVAVQG-NVDPGA---------L-FGSKDFITNRINDTVRKAG--RW 355 (386)
Q Consensus 292 ~l~~l~e~g~d~l~~d~--~~dl~e~~~~~g~-~~~l~G-~vd~~~---------l-~gt~eev~~~v~~~i~~~~--~~ 355 (386)
.++.++++|++.+.+.. ..+..++++.+.+ .+.+.+ +.++.. + ....++..+.++++++.+. |.
T Consensus 19 ~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (254)
T TIGR03234 19 RFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGC 98 (254)
T ss_pred HHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCC
Confidence 47788888888886532 3456666655432 233322 122211 1 1334556677888887765 55
Q ss_pred CeEE-ecCCCCCCCCcHH--------HHHHHHHHHHhhc
Q 016596 356 KHIL-NLGHGIKVGTPEE--------NVAHFFEVAKAIR 385 (386)
Q Consensus 356 g~Il-s~gc~i~~~tp~E--------ni~a~~~a~~~yg 385 (386)
..|. .+|. .+.+.+.+ +++.+.+.+.++|
T Consensus 99 ~~i~~~~g~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~g 136 (254)
T TIGR03234 99 PQVNCLAGK-RPAGVSPEEARATLVENLRYAADALDRIG 136 (254)
T ss_pred CEEEECcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5554 3342 33333322 3555566666554
No 232
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=73.38 E-value=60 Score=29.37 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC--CC-EEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCH
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG--VD-VVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSK 338 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g--~d-~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~ 338 (386)
.+.++++++.+++. +.|+.+|+-+... .++.+.+.| .. ++++. ..+.+.+++.+...+-+. ++......+.
T Consensus 107 ~~~~~~~~~~a~~~--~~pv~iH~~~~~~~~~~~l~~~~~~~~~i~H~~-~~~~~~~~~~~~~g~~~~--~~~~~~~~~~ 181 (252)
T TIGR00010 107 EEVFRAQLQLAEEL--NLPVIIHARDAEEDVLDILREEKPKVGGVLHCF-TGDAELAKKLLDLGFYIS--ISGIVTFKNA 181 (252)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEecCccHHHHHHHHhcCCCCCEEEEcc-CCCHHHHHHHHHCCCeEe--eceeEecCCc
Confidence 46667777777776 6899999876655 578887774 23 33554 457777777764322221 2221112333
Q ss_pred HHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 339 DFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 339 eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+.++++++.....+++++++..
T Consensus 182 ----~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 182 ----KSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred ----HHHHHHHHhCCHHHeEecccCC
Confidence 3344555555556888988864
No 233
>PLN02803 beta-amylase
Probab=73.24 E-value=4.3 Score=41.40 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASGS 289 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG~ 289 (386)
..++++..+|+|+|.+ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+- ..+|-||.
T Consensus 111 ~~L~~LK~~GVdGVmv-DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 111 ASLMALRSAGVEGVMV-DAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred HHHHHHHHcCCCEEEE-EeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 4455677899999986 55544333222255789999999999999742221 33688874
No 234
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=73.18 E-value=47 Score=29.43 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~d 307 (386)
.++.+.++|+|.|.+.--. ++ ...+++++.++++ |.++++=.++..+ ....+.+.|+|.+.+.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~----~~--------~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA----DD--------ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccC----CH--------HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3667789999988754211 11 2457788888887 5777765444332 3455577899988765
Q ss_pred CC--------CC---HHHHHHHhCC-CeeEEecCC
Q 016596 308 WT--------VD---MAEGRRRLGP-DVAVQGNVD 330 (386)
Q Consensus 308 ~~--------~d---l~e~~~~~g~-~~~l~G~vd 330 (386)
+. .. +.++++.++. .+.+.|||+
T Consensus 134 pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~ 168 (206)
T TIGR03128 134 TGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGIN 168 (206)
T ss_pred CCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcC
Confidence 32 12 4555565543 344578884
No 235
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.00 E-value=90 Score=29.88 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++.++...++|+|++.+.-|.-...++ +=+.-|++.+.++.. +.|++++..
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~----~~l~~yf~~va~a~~----~lPv~iYn~ 143 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDV----DTAVQFYRDVAEAVP----EMAIAIYAN 143 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCH----HHHHHHHHHHHHhCC----CCcEEEEcC
Confidence 345556677889988876664323332 445567777777642 246666644
No 236
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=72.70 E-value=1.2e+02 Score=31.37 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-c--CCc----c-hHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-S--GSG----G-LLERL 296 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-c--G~~----~-~l~~l 296 (386)
++..+++++.+.++|++.|=++-+. .||+.|+ +.+++.+.--. +..+.... + ++. . -++.+
T Consensus 26 ~e~Kl~ia~~L~~~Gvd~IEvG~p~---as~~d~~-----~~~~i~~~~l~---~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 26 VEDKLRIARKLDELGVDYIEGGWPG---SNPKDTE-----FFKRAKELKLK---HAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCc---CChhHHH-----HHHHHHHhCCC---CcEEEEEeeccccCCCcccHHHHHHH
Confidence 4555667778889999988664332 5676644 23444431101 22333322 2 112 1 25667
Q ss_pred HhcCCCEEEcC
Q 016596 297 ALTGVDVVSLD 307 (386)
Q Consensus 297 ~e~g~d~l~~d 307 (386)
.+.|++.+++-
T Consensus 95 ~~~g~~~i~i~ 105 (524)
T PRK12344 95 LDAGTPVVTIF 105 (524)
T ss_pred HhCCCCEEEEE
Confidence 78888877654
No 237
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=72.50 E-value=76 Score=30.02 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHH--HhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL--ALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l--~e~g~d~l~~ 306 (386)
..-++.+.++|+|.| | -...++| ..+++..+|..+ ...+.||..++=+.+ .+.|++.+..
T Consensus 79 ~~Ea~~L~~~GvDiI---D-eTe~lrP----------ade~~~~~K~~f----~vpfmad~~~l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 79 FVEAQILEALGVDYI---D-ESEVLTP----------ADWTFHIDKKKF----KVPFVCGARDLGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHcCCCEE---E-ccCCCCc----------HHHHHHHHHHHc----CCCEEccCCCHHHHHHHHHCCCCEEec
Confidence 445566778999987 3 2225777 255566666643 356788887754444 4679998864
No 238
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=72.25 E-value=24 Score=33.40 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCC-EEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC--CCCcEEEEecCCcch-H-HHH--
Q 016596 224 FTTSMAKYVQYQADNGAQ-AVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH--PDLSLILYASGSGGL-L-ERL-- 296 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d-~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~--~~~~~~~H~cG~~~~-l-~~l-- 296 (386)
+.++..++++...++|++ .|.++|+.+ ..+|..|-.+ -....++++.+++.. ++.++-+|++-+... + ..+
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG-~a~P~~~~~~-p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA 224 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLG-YGVPYPGASL-PRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAA 224 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCC-cCCccccccc-hHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHH
Confidence 344455555566679999 688888776 3444222111 011234444444431 234588999988753 3 333
Q ss_pred HhcCCCEEEc
Q 016596 297 ALTGVDVVSL 306 (386)
Q Consensus 297 ~e~g~d~l~~ 306 (386)
.+.|++.++.
T Consensus 225 ~~aG~~~vd~ 234 (279)
T cd07947 225 WLYGASWVNC 234 (279)
T ss_pred HHhCCCEEEE
Confidence 4679888753
No 239
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=72.25 E-value=80 Score=28.97 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHH---hcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLA---LTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~---e~g~ 301 (386)
.++++.+.+.|++.+.+.+-. .+..+. +-+..++++.+.. +.|++ ..|...- +..+. +.|+
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G-----~d~~~i~~i~~~~-----~ipvi--asGGi~s~~D~~~l~~~~~~Gv 216 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTG-----PNLELLREVCART-----DAPVV--ASGGVSSLDDLRALAELVPLGV 216 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccC-----CCHHHHHHHHhhC-----CCCEE--EeCCCCCHHHHHHHhhhccCCc
Confidence 456666677888877776522 222222 1244445554433 34643 3454432 32322 2477
Q ss_pred CEEEc-----CCCCCHHHHHHH
Q 016596 302 DVVSL-----DWTVDMAEGRRR 318 (386)
Q Consensus 302 d~l~~-----d~~~dl~e~~~~ 318 (386)
+.+-+ +...++.++++.
T Consensus 217 dgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 217 EGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred cEEEEeHHHHcCCCCHHHHHHH
Confidence 76644 344677777654
No 240
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=72.19 E-value=45 Score=30.74 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=42.8
Q ss_pred hHHHHHhcCCCEEEcCC--CCCHHHHHHHhCC-CeeEEe-cCCcCc---------c-CCCHHHHHHHHHHHHHHcC--CC
Q 016596 292 LLERLALTGVDVVSLDW--TVDMAEGRRRLGP-DVAVQG-NVDPGA---------L-FGSKDFITNRINDTVRKAG--RW 355 (386)
Q Consensus 292 ~l~~l~e~g~d~l~~d~--~~dl~e~~~~~g~-~~~l~G-~vd~~~---------l-~gt~eev~~~v~~~i~~~~--~~ 355 (386)
.++.++++|++.+.+.. ..+++++++.+.. .+.+.. +++... + .+..++..+.++++++.+. +.
T Consensus 20 ~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga 99 (258)
T PRK09997 20 RFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGN 99 (258)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 47888899999887532 2477777766532 233322 333321 2 2456777888899988775 65
Q ss_pred CeEEec
Q 016596 356 KHILNL 361 (386)
Q Consensus 356 g~Ils~ 361 (386)
.+|..+
T Consensus 100 ~~i~~~ 105 (258)
T PRK09997 100 KKINCL 105 (258)
T ss_pred CEEEEC
Confidence 665543
No 241
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=72.15 E-value=10 Score=34.71 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec--CCc----------ch-HHH
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS--GSG----------GL-LER 295 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c--G~~----------~~-l~~ 295 (386)
..-++..++.|||.|-+.-.++...|.+ ++...--.+++.+.+++. +.|+++..- +.. .. -..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~--~~~~~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ri 154 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN--EDEVIEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARI 154 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH--HHHHHHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccccccc--HHHHHHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHH
Confidence 3445667889999987655554434433 566667788999999976 688888821 111 11 134
Q ss_pred HHhcCCCEEEcCCC-------CCHHHHHHHhC-----CC--eeEEecCC
Q 016596 296 LALTGVDVVSLDWT-------VDMAEGRRRLG-----PD--VAVQGNVD 330 (386)
Q Consensus 296 l~e~g~d~l~~d~~-------~dl~e~~~~~g-----~~--~~l~G~vd 330 (386)
..++|+|.+-.... .|....++..+ ++ +.+.||++
T Consensus 155 a~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~ 203 (236)
T PF01791_consen 155 AAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGID 203 (236)
T ss_dssp HHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSS
T ss_pred HHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCC
Confidence 46889999955433 35555555543 22 77788883
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=72.10 E-value=21 Score=38.84 Aligned_cols=110 Identities=14% Similarity=0.282 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHh------hHHHHHHHHHHHHhhCC-CCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEF------SLPYLKQIVDTVKQTHP-DLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef------~~P~~k~l~~~i~~~~~-~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-|.-.-+ .|+||-. =.|| =..+..++++++++.-+ +.++.+-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri 625 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRI 625 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 445555555666777889999998864322 3677632 1122 14567788888888632 45677665
Q ss_pred cC------Ccc------hHHHHHhcCCCEEEcCCC---------------CCH-HHHHHHhCCCeeEEecCC
Q 016596 287 SG------SGG------LLERLALTGVDVVSLDWT---------------VDM-AEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 287 cG------~~~------~l~~l~e~g~d~l~~d~~---------------~dl-~e~~~~~g~~~~l~G~vd 330 (386)
.. .++ +...+.+.|+|.+++... .+. .++|+.++-.+...|+|.
T Consensus 626 ~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~ 697 (765)
T PRK08255 626 SAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAIS 697 (765)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCC
Confidence 53 111 135666789999987421 111 346666654455666663
No 243
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.96 E-value=86 Score=29.24 Aligned_cols=149 Identities=14% Similarity=0.177 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHHH----hhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFEE----FSLPYLKQIVDTVKQTHPDLSLILYASGSG----- 290 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~e----f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----- 290 (386)
+...+.++.+.+.|+|.|=++ ||.+. .|-...-+- +-..-.-+++..+++...+.|+++...-|.
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 344556667888999988765 45442 222211111 011122334444442223568777766553
Q ss_pred --chHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc--CCCHH-HHHHHHHHHHHHcCCCCeEE--ecCC
Q 016596 291 --GLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL--FGSKD-FITNRINDTVRKAGRWKHIL--NLGH 363 (386)
Q Consensus 291 --~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~e-ev~~~v~~~i~~~~~~g~Il--s~gc 363 (386)
.+++.+++.|++++-+.. ..++++.+.... +--=|+++..| -.|++ .++. +.+. ..|||- +. -
T Consensus 106 ~e~f~~~~~~aGvdGviipD-Lp~ee~~~~~~~--~~~~gl~~I~lvap~t~~eri~~----i~~~--s~gfIY~vs~-~ 175 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPD-LPPEEAEELRAA--AKKHGLDLIFLVAPTTTDERLKK----IASH--ASGFVYYVSR-A 175 (258)
T ss_pred HHHHHHHHHHcCCcEEEECC-CCHHHHHHHHHH--HHHcCCcEEEEeCCCCCHHHHHH----HHHh--CCCcEEEEeC-C
Confidence 246788889999886632 334444333310 11114666543 34443 3333 2222 346663 32 1
Q ss_pred CC-C-CCCcHHHHHHHHHHHHhh
Q 016596 364 GI-K-VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 364 ~i-~-~~tp~Eni~a~~~a~~~y 384 (386)
++ . ....++++..+++.+|++
T Consensus 176 GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 176 GVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred CCCCcccCCCccHHHHHHHHHhc
Confidence 11 1 112345677777777764
No 244
>PLN02801 beta-amylase
Probab=71.94 E-value=5 Score=40.71 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASGS 289 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG~ 289 (386)
..++++..+|+|+|.+ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+- ..+|-||.
T Consensus 41 ~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 41 KQLKRLKEAGVDGVMV-DVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHcCCCEEEE-eeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 3445677899999986 54433333222245789999999999999742211 34688874
No 245
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=71.81 E-value=92 Score=29.51 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-chHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-GLLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~~l~~l~e~g~d~l~~d 307 (386)
..+++..+.++.+|.-. |+...+-.-.+.+..++..+.+.. .+|+.+|.+ |.. ..+..-++.|++.+.+|
T Consensus 31 avi~AAee~~sPvIlq~-------s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~i~~ai~~GFtSVM~D 102 (282)
T TIGR01858 31 AVVETAAEMRSPVILAG-------TPGTFKHAGTEYIVALCSAASTTY-NMPLALHLDHHESLDDIRQKVHAGVRSAMID 102 (282)
T ss_pred HHHHHHHHhCCCEEEEe-------CccHHhhCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCEEeec
Confidence 33445556677776532 222222112222333444333332 589999986 433 25677788999999887
Q ss_pred CC-C----CHHHHH------HHhCCCeeE---EecC---CcC-------ccCCCHHHHHHHHHHH-HHHcCCCCeEEecC
Q 016596 308 WT-V----DMAEGR------RRLGPDVAV---QGNV---DPG-------ALFGSKDFITNRINDT-VRKAGRWKHILNLG 362 (386)
Q Consensus 308 ~~-~----dl~e~~------~~~g~~~~l---~G~v---d~~-------~l~gt~eev~~~v~~~-i~~~~~~g~Ils~g 362 (386)
.. . +++..+ ..+| +.+ .|.| .-. .++-+|||+++.+++. ++.+ -.=+++.
T Consensus 103 gS~lp~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiGt~ 177 (282)
T TIGR01858 103 GSHFPFAQNVKLVKEVVDFCHRQD--CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSL---AVAIGTA 177 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEE---ecccCcc
Confidence 54 2 333222 2333 232 2222 111 1256888888888754 2222 1224445
Q ss_pred CCCC---CCCcHHHHHHHHHH
Q 016596 363 HGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 363 c~i~---~~tp~Eni~a~~~a 380 (386)
|++. |....+.++.+-+.
T Consensus 178 HG~yk~~p~Ldf~~L~~I~~~ 198 (282)
T TIGR01858 178 HGLYKKTPKLDFDRLAEIREV 198 (282)
T ss_pred ccCcCCCCccCHHHHHHHHHH
Confidence 6654 34556666665544
No 246
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=71.62 E-value=64 Score=32.37 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcH-HHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAP-FTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gP-ft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
+|++.+.+++++..++.|..+-...+++++ .+ -+.+.++...
T Consensus 181 eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~-------------------------------------em~~ra~~~~ 223 (414)
T cd08206 181 DRILFVAEAMDKAEAETGEAKGHYLNITADTPE-------------------------------------EMIKRAEFAK 223 (414)
T ss_pred HHHHHHHHHHHHHHHhhCCcceEEeccCCCcHH-------------------------------------HHHHHHHHHH
Confidence 567788889999999988765445555554 21 1112334566
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc----------c-h-HHHH-HhcCCCE
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG----------G-L-LERL-ALTGVDV 303 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----------~-~-l~~l-~e~g~d~ 303 (386)
++|+..+++.--..++ ..+..+.+...+. +.++..|-.+.- . . +-.| .=.|+|.
T Consensus 224 ~~G~~~~mv~~~~~G~-----------~~l~~l~~~~~~~--~l~ih~HrA~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ 290 (414)
T cd08206 224 ELGSVIVMVDGVTAGW-----------TAIQSARRWCPDN--GLALHAHRAGHAAFTRQKNHGISMRVLAKLARLIGVDH 290 (414)
T ss_pred HhCCcEEEEeeecccH-----------HHHHHHHHhcccc--CeEEEEccccceecccCCCCcCcHHHHHHHHHHcCCCc
Confidence 7899988764333331 1223333322221 456666655431 1 1 2222 2348887
Q ss_pred EEcCCC-----CCHHH---HHHHhCCCee-----------EEecCCcCcc--CC--CHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 304 VSLDWT-----VDMAE---GRRRLGPDVA-----------VQGNVDPGAL--FG--SKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 304 l~~d~~-----~dl~e---~~~~~g~~~~-----------l~G~vd~~~l--~g--t~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+++... .+-++ +.+.+-.... -+|++.+..- .| ++. .+.++++..| .-+|+.
T Consensus 291 ih~~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~----~~p~~~~~~G-~Dvil~ 365 (414)
T cd08206 291 IHTGTVVGKLEGDPSEVKGIADMLREDEVEGDLSRIFFNQDWGGMKPVFPVASGGLHPG----RMPALIEILG-DDVILQ 365 (414)
T ss_pred cccCCCccCCCCCHHHHHHHHHHhhcccccCCccccccccccccCCCcEEecCCccChh----HHHHHHHHhC-CceEEe
Confidence 766432 22222 2222211100 1556555541 21 222 3455666666 448888
Q ss_pred cCCCC--CCCCcHHHHHHHHHHHHh
Q 016596 361 LGHGI--KVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 361 ~gc~i--~~~tp~Eni~a~~~a~~~ 383 (386)
.|-++ -|+-+.+..+|+.+++..
T Consensus 366 ~GGGi~gHP~G~~aGa~A~rqA~ea 390 (414)
T cd08206 366 FGGGTHGHPDGPAAGAKANRQALEA 390 (414)
T ss_pred cCCceecCCCChhhHHHHHHHHHHH
Confidence 88887 467788889998887654
No 247
>PLN02161 beta-amylase
Probab=71.60 E-value=4.6 Score=40.96 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASG 288 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG 288 (386)
..++++..+|+|+|.+ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+- ..+|-||
T Consensus 121 ~~L~~LK~~GVdGVmv-DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCG 180 (531)
T PLN02161 121 VSLKALKLAGVHGIAV-EVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNM 180 (531)
T ss_pred HHHHHHHHcCCCEEEE-EeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 4455677899999986 55544333222245789999999999999742221 3368765
No 248
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=71.41 E-value=74 Score=28.65 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC-
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT- 309 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~- 309 (386)
.++..+++|+..|++-+.. +|.+.|.++ .+++....++. +.++++|. .++.-.+++++++|+.+.
T Consensus 24 ~l~~~l~~G~~~vqLR~k~---~~~~~~~~l----a~~l~~~~~~~--~~~liInd-----~~~lA~~~~adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKD---RRDEEVEAD----VVAAIALGRRY--QARLFIND-----YWRLAIKHQAYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCC---CCHHHHHHH----HHHHHHHHHHh--CCeEEEeC-----HHHHHHHcCCCEEEcChHh
Confidence 4677889999999986544 566666544 34455555554 56777774 245556678888887643
Q ss_pred CCHHHHHHHhCC
Q 016596 310 VDMAEGRRRLGP 321 (386)
Q Consensus 310 ~dl~e~~~~~g~ 321 (386)
....++++.+|.
T Consensus 90 ~~~~~~r~~~~~ 101 (211)
T PRK03512 90 LETADLNAIRAA 101 (211)
T ss_pred CCHHHHHHhcCC
Confidence 334566665553
No 249
>PLN02905 beta-amylase
Probab=71.34 E-value=5 Score=41.70 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASGS 289 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG~ 289 (386)
..++++..+|+|+|.+ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+- ..+|-||.
T Consensus 290 a~L~aLK~aGVdGVmv-DVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 290 KQLRILKSINVDGVKV-DCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHcCCCEEEE-eeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 4455677899999986 65544333322356889999999999999742221 34688874
No 250
>PLN00197 beta-amylase; Provisional
Probab=71.21 E-value=5 Score=41.05 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASGS 289 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG~ 289 (386)
..++++..+|+|+|.+ |-|=+++-.+-=.+|-|-+++++++.+++.|-.+- ..+|-||.
T Consensus 131 ~~L~~LK~~GVdGVmv-DvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 131 ASLQALKSAGVEGIMM-DVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHcCCCEEEE-eeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 3445677899999986 55544333323356889999999999999742221 33687864
No 251
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=71.19 E-value=1.1e+02 Score=29.92 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~d 307 (386)
+++.|++++...++++++..+++..--. +. +. .+..+.+-+.++. + .+..+.++|++-+++.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~-~~---~~---~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiG 115 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIIS-PY---LS---KDCEITTEANPNSATKAWLKGMKNLGVNRISFG 115 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHH-Hh---cC---CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEe
Confidence 6778888888888999998777543221 11 11 1233334444432 2 5889999999987653
No 252
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.84 E-value=95 Score=29.26 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|...-.|+ +=+.-|++++.++.. +.|++++.. |.. . .+..+.+.+
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~----~~i~~~~~~v~~a~~----~lpi~iYn~P~~tg~~l~~~~~~~L~~~p- 156 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSF----EEIKDYYREIIAAAA----SLPMIIYHIPALTGVNLTLEQFLELFEIP- 156 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCH----HHHHHHHHHHHHhcC----CCCEEEEeCccccCCCCCHHHHHHHhcCC-
Confidence 344556678899988876655333343 345667777777652 246666643 322 1 244555543
Q ss_pred CEEEc-CCCCCHH---HHHHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDMA---EGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl~---e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+. ++.+..+++..++.|.|.
T Consensus 157 nivgiK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 190 (288)
T cd00954 157 NVIGVKFTATDLYDLERIRAASPEDKLVLNGFDE 190 (288)
T ss_pred CEEEEEeCCCCHHHHHHHHHhCCCCcEEEEechH
Confidence 45544 2333443 344444545555555554
No 253
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=70.76 E-value=1e+02 Score=29.46 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=37.1
Q ss_pred HHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE------------ecCCcc--hHHHHHhc
Q 016596 234 YQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY------------ASGSGG--LLERLALT 299 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H------------~cG~~~--~l~~l~e~ 299 (386)
...+.|+..|.+.+....... ..++.++++.+++.+++ +-+| +.|... .+..|++.
T Consensus 47 ~~~~~G~~~i~l~gg~~~~~~--------~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 47 EAVAKGATEVCIQGGLNPQLD--------IEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred HHHHCCCCEEEEecCCCCCCC--------HHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345679888887643221222 34677888899887422 2222 223332 47888999
Q ss_pred CCCEEE
Q 016596 300 GVDVVS 305 (386)
Q Consensus 300 g~d~l~ 305 (386)
|++.+.
T Consensus 117 Gl~~i~ 122 (309)
T TIGR00423 117 GLDSMP 122 (309)
T ss_pred CCCcCC
Confidence 988763
No 254
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.76 E-value=59 Score=29.25 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=77.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc
Q 016596 212 SQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG 291 (386)
Q Consensus 212 ~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~ 291 (386)
-||++. +...+.++...++|+|.|+++.+.+ ++++. ..++++.+|+.. ++|++++- |+..
T Consensus 5 iDP~k~--------e~~~~ia~~v~~~gtDaI~VGGS~g--vt~~~--------~~~~v~~ik~~~-~lPvilfp-~~~~ 64 (205)
T TIGR01769 5 IDPEKS--------DEIEKIAKNAKDAGTDAIMVGGSLG--IVESN--------LDQTVKKIKKIT-NLPVILFP-GNVN 64 (205)
T ss_pred cCCCcH--------HHHHHHHHHHHhcCCCEEEEcCcCC--CCHHH--------HHHHHHHHHhhc-CCCEEEEC-CCcc
Confidence 367766 2233466677889999999865532 34433 334566677754 68999874 4433
Q ss_pred hHHHHHhcCCCEE---EcCCCCCH-------HHHH---HHhCCCeeEEec--CCcC----c------c-CCCHHHHHHHH
Q 016596 292 LLERLALTGVDVV---SLDWTVDM-------AEGR---RRLGPDVAVQGN--VDPG----A------L-FGSKDFITNRI 345 (386)
Q Consensus 292 ~l~~l~e~g~d~l---~~d~~~dl-------~e~~---~~~g~~~~l~G~--vd~~----~------l-~gt~eev~~~v 345 (386)
.+ .-++|.+ ++-+..|. .++. +++|..+.-.|- ++|. . + .-++|++..++
T Consensus 65 ~i----~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a 140 (205)
T TIGR01769 65 GL----SRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYC 140 (205)
T ss_pred cc----CcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHH
Confidence 21 1235654 22221111 2233 556654444444 2331 1 1 35677766665
Q ss_pred HHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHH
Q 016596 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVA 381 (386)
Q Consensus 346 ~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~ 381 (386)
.-+ +..|-.-+-|--+-+.....++|-++.+.+.+
T Consensus 141 ~aa-~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~ 175 (205)
T TIGR01769 141 LAA-KYFGMKWVYLEAGSGASYPVNPETISLVKKAS 175 (205)
T ss_pred HHH-HHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh
Confidence 443 33334555555556676667777666665543
No 255
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=70.54 E-value=76 Score=30.05 Aligned_cols=107 Identities=8% Similarity=0.086 Sum_probs=57.4
Q ss_pred HHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCC
Q 016596 232 VQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDW 308 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~ 308 (386)
+++..+.+..+|.-..+.. ...+. +++.+..+...+ +. .+|+.+|.+-... .+...++.|++.+.++.
T Consensus 35 i~aAe~~~~Pvii~~~~~~~~~~~~----~~~~~~~~~~a~---~~--~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~ 105 (281)
T PRK06806 35 IKAAEELNSPIILQIAEVRLNHSPL----HLIGPLMVAAAK---QA--KVPVAVHFDHGMTFEKIKEALEIGFTSVMFDG 105 (281)
T ss_pred HHHHHHhCCCEEEEcCcchhccCCh----HHHHHHHHHHHH---HC--CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcC
Confidence 3445566777765332221 12222 234444444433 33 5899999864333 46788889999999876
Q ss_pred CC-C----------HHHHHHHhCCC----eeEEecCCc--C--cc-CCCHHHHHHHHHH
Q 016596 309 TV-D----------MAEGRRRLGPD----VAVQGNVDP--G--AL-FGSKDFITNRIND 347 (386)
Q Consensus 309 ~~-d----------l~e~~~~~g~~----~~l~G~vd~--~--~l-~gt~eev~~~v~~ 347 (386)
.. + +.++.+.+|-. +.=.|+-+. . .. ..|+|++++.+++
T Consensus 106 s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~ 164 (281)
T PRK06806 106 SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEE 164 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHh
Confidence 42 2 23334444311 112333321 1 12 4789998888765
No 256
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=70.37 E-value=59 Score=31.42 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.++.+|.-..+.. .+... .+-+.+.+..+.+.+.. +..+|+.+|.+-... .+..-++.|++.+.+
T Consensus 39 avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a---~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMi 114 (321)
T PRK07084 39 AIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKEL---GCPIPIVLHLDHGDSFELCKDCIDSGFSSVMI 114 (321)
T ss_pred HHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHc---CCCCcEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 334455566777765433222 22222 22233333334333332 113799999864333 467777889999888
Q ss_pred CCC-C----CHHHH------HHHhCCCeeE------EecC-Cc----CccCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-V----DMAEG------RRRLGPDVAV------QGNV-DP----GALFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-~----dl~e~------~~~~g~~~~l------~G~v-d~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. . +++.. .+.+| +.+ +|+. |. ..++-+||++++.+++. ++.+. .=+++.|
T Consensus 115 D~S~lp~eeNI~~T~evv~~Ah~~G--vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LA---vaiGt~H 189 (321)
T PRK07084 115 DGSHLPYEENVALTKKVVEYAHQFD--VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLA---ISIGTSH 189 (321)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEe---ecccccc
Confidence 753 2 33322 23332 222 1222 22 11267899999998873 22221 1133345
Q ss_pred CC--------CCCCcHHHHHHHHHHH
Q 016596 364 GI--------KVGTPEENVAHFFEVA 381 (386)
Q Consensus 364 ~i--------~~~tp~Eni~a~~~a~ 381 (386)
+. .|....+.++.+-+++
T Consensus 190 G~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 190 GAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred ccccCCCCCCCCccCHHHHHHHHHhc
Confidence 54 3456777777665554
No 257
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=70.08 E-value=97 Score=29.81 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC-cEEEEecCCcc--hHHHHHhcCCCEEE
Q 016596 234 YQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL-SLILYASGSGG--LLERLALTGVDVVS 305 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~-~~~~H~cG~~~--~l~~l~e~g~d~l~ 305 (386)
.+.+.|+..|.+.. --.++.|+ +.++++.+++.. +. .+.+.+.|... .++.+.+.|++.++
T Consensus 54 ~~~~~gv~~V~ltG-GEPll~~~---------l~~li~~i~~~~-gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ 117 (334)
T TIGR02666 54 AFVGLGVRKVRLTG-GEPLLRKD---------LVELVARLAALP-GIEDIALTTNGLLLARHAKDLKEAGLKRVN 117 (334)
T ss_pred HHHHCCCCEEEEEC-ccccccCC---------HHHHHHHHHhcC-CCCeEEEEeCchhHHHHHHHHHHcCCCeEE
Confidence 34456888777643 11245442 345555555532 44 56677777643 46888899988664
No 258
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.03 E-value=48 Score=33.94 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCEEEEecCC---cCCCCHHHHHHh-hHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEE
Q 016596 230 KYVQYQADNGAQAVQIFDSW---ATELSPVDFEEF-SLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~---~~~iSp~~f~ef-~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l 304 (386)
+..+.+.+.+...+-+.|.. .++++.+...+. ..|..+. .+. +. .+.-......+.. .+..|.+.|++++
T Consensus 169 eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~-~~g--~l--~V~aav~~~~~~~~~a~~Lv~aGvd~i 243 (479)
T PRK07807 169 EAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVD-AAG--RL--RVAAAVGINGDVAAKARALLEAGVDVL 243 (479)
T ss_pred HHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhh-hhh--cc--chHhhhccChhHHHHHHHHHHhCCCEE
Confidence 34445566777777666642 357777766543 2332211 111 00 0111122223333 5788889999999
Q ss_pred EcCCCC--------CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 305 SLDWTV--------DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 305 ~~d~~~--------dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
-+|... -++++|+.+++-..+.|||.+ .+.++.+++.+
T Consensus 244 ~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t----------~~~a~~l~~aG 289 (479)
T PRK07807 244 VVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVT----------AEGTRDLVEAG 289 (479)
T ss_pred EEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCC----------HHHHHHHHHcC
Confidence 887432 268889999876677789854 44556666654
No 259
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.88 E-value=1.2e+02 Score=29.85 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
++++++.+.+.|+..+. .-.+-..=||.-|+.+...-++-+.+..++. |.+++-=.. +...++.+.++ +|++-+.
T Consensus 117 ~l~~A~~lk~~g~~~~r-~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~--Gl~~~tev~-d~~~v~~~~~~-~d~lqIg 191 (352)
T PRK13396 117 IVETAKRVKAAGAKFLR-GGAYKPRTSPYAFQGHGESALELLAAAREAT--GLGIITEVM-DAADLEKIAEV-ADVIQVG 191 (352)
T ss_pred HHHHHHHHHHcCCCEEE-eeeecCCCCCcccCCchHHHHHHHHHHHHHc--CCcEEEeeC-CHHHHHHHHhh-CCeEEEC
Confidence 34555566666887654 2222244566677777755555555555554 566443222 22347888888 8998775
Q ss_pred CC--CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 308 WT--VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 308 ~~--~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.. .+..-+++ .++. |. |..| ..|.||+...+..+...+ ...++|. -||+
T Consensus 192 a~~~~n~~LL~~-va~t-----~k-PVllk~G~~~t~ee~~~A~e~i~~~G-n~~viL~-erG~ 246 (352)
T PRK13396 192 ARNMQNFSLLKK-VGAQ-----DK-PVLLKRGMAATIDEWLMAAEYILAAG-NPNVILC-ERGI 246 (352)
T ss_pred cccccCHHHHHH-HHcc-----CC-eEEEeCCCCCCHHHHHHHHHHHHHcC-CCeEEEE-ecCC
Confidence 43 34333333 3321 11 2222 469999999999988654 3455654 3533
No 260
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=69.86 E-value=1e+02 Score=29.19 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHH
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTV 273 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i 273 (386)
++.++...+.|+|++.+.-|...-.++ +=+.-|++++.++.
T Consensus 86 i~la~~a~~~Gad~v~v~~P~y~~~~~----~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 86 VELGKYATELGYDCLSAVTPFYYKFSF----PEIKHYYDTIIAET 126 (290)
T ss_pred HHHHHHHHHhCCCEEEEeCCcCCCCCH----HHHHHHHHHHHhhC
Confidence 345555666788877765554333332 33555666666653
No 261
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=69.79 E-value=1.3e+02 Score=30.50 Aligned_cols=145 Identities=12% Similarity=0.185 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec--CC---cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC-----C----
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFD--SW---ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG-----S---- 289 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d--~~---~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG-----~---- 289 (386)
-++-.++.++.+.++|.+.|=+.. .+ -.+++++-|+. ++++.+.+ ++.++..+.-| -
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~-----l~~l~~~~----~~~~l~~l~r~~N~~G~~~~p 94 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWER-----LRKIRKAV----KKTKLQMLLRGQNLLGYRNYA 94 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHH-----HHHHHHhC----CCCEEEEEeccccccccccCc
Confidence 445556677778888988876531 11 14788875443 33333332 24455544543 1
Q ss_pred --cc--hHHHHHhcCCCEEEc-CCCCC---HHHH---HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 290 --GG--LLERLALTGVDVVSL-DWTVD---MAEG---RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 290 --~~--~l~~l~e~g~d~l~~-d~~~d---l~e~---~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
.. .++...+.|++++.+ +...| +.++ .+..|. .+.+++....- .-|++-+.+.++++.+.+.+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~--~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad--- 169 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG--HAQVAISYTTSPVHTIDYFVKLAKEMQEMGAD--- 169 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC--eEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC---
Confidence 11 246667889998865 32222 3222 233443 23344433221 56788888888888665323
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++-. +...-..|+.+..+++++++
T Consensus 170 ~I~i~-Dt~G~l~P~~v~~lv~alk~ 194 (448)
T PRK12331 170 SICIK-DMAGILTPYVAYELVKRIKE 194 (448)
T ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHH
Confidence 23332 33334456667788887765
No 262
>PTZ00413 lipoate synthase; Provisional
Probab=69.36 E-value=1.2e+02 Score=30.01 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc----chHHHHHhcCCCEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG----GLLERLALTGVDVV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~----~~l~~l~e~g~d~l 304 (386)
+.+++..+.|+..+.+......-++..-++ .+.+.++.|++..++ +.+.++ |+. ..+..+.+.|++++
T Consensus 184 ~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-----~~a~~I~~Ir~~~p~--~~IevligDf~g~~e~l~~L~eAG~dvy 256 (398)
T PTZ00413 184 KVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-----HVARCVELIKESNPE--LLLEALVGDFHGDLKSVEKLANSPLSVY 256 (398)
T ss_pred HHHHHHHHcCCCEEEEEEEcCCCCChhhHH-----HHHHHHHHHHccCCC--CeEEEcCCccccCHHHHHHHHhcCCCEE
Confidence 344556678888655433222234544343 455788888875333 344443 543 35899999999999
Q ss_pred Ec--CCC-----------CC-------HHHHHHHhCCCeeEEecCCc--Cc---cCCCHHHHHHHHHHHHHHcCC----C
Q 016596 305 SL--DWT-----------VD-------MAEGRRRLGPDVAVQGNVDP--GA---LFGSKDFITNRINDTVRKAGR----W 355 (386)
Q Consensus 305 ~~--d~~-----------~d-------l~e~~~~~g~~~~l~G~vd~--~~---l~gt~eev~~~v~~~i~~~~~----~ 355 (386)
+- +.. .+ +..+++.|. |++.+ .. |-.|.||+.+-.+++.+..-+ |
T Consensus 257 nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~------~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIG 330 (398)
T PTZ00413 257 AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTN------GAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLG 330 (398)
T ss_pred ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhc------CCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeec
Confidence 53 211 12 234444432 23333 11 347888888877777665432 3
Q ss_pred CeEEecCCCCC--CCCcHHHHHHHHHHHHhhcC
Q 016596 356 KHILNLGHGIK--VGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 356 g~Ils~gc~i~--~~tp~Eni~a~~~a~~~yg~ 386 (386)
.|.--+-..+| .-++||.+..+-+.+.+.|+
T Consensus 331 QYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf 363 (398)
T PTZ00413 331 QYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGF 363 (398)
T ss_pred cccCCCcccCCceeccCHHHHHHHHHHHHHcCC
Confidence 33333333444 35789999999999888775
No 263
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=69.23 E-value=1.1e+02 Score=31.36 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCCeEEecCCCC--CCCCcHHHHHHHHHHHH
Q 016596 345 INDTVRKAGRWKHILNLGHGI--KVGTPEENVAHFFEVAK 382 (386)
Q Consensus 345 v~~~i~~~~~~g~Ils~gc~i--~~~tp~Eni~a~~~a~~ 382 (386)
+.++++.+| .-+|+..|-++ -|+-+.+..+|+.+++.
T Consensus 380 vp~~~~~~G-~Dvil~~GGGi~gHP~G~~aGa~A~rqA~e 418 (468)
T PRK04208 380 MPALLDIFG-DDVVLQFGGGTHGHPDGTAAGATANRVALE 418 (468)
T ss_pred HHHHHHHhC-CceEEecCCceecCCCChhhHHHHHHHHHH
Confidence 445566666 34888888887 46778888888887764
No 264
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=69.16 E-value=36 Score=31.40 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=79.5
Q ss_pred HHHhCCCEEEEecCCc---------CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC---Ccc----hHHHHHh
Q 016596 235 QADNGAQAVQIFDSWA---------TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG---SGG----LLERLAL 298 (386)
Q Consensus 235 ~~e~G~d~i~i~d~~~---------~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG---~~~----~l~~l~e 298 (386)
+.++|.+++++++... +.++-++..+ ..+.+.... ..|++..... +.. ....+.+
T Consensus 25 ~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~----~~~~I~~~~-----~~Pv~~D~~~G~g~~~~~~~~v~~~~~ 95 (243)
T cd00377 25 AERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLA----AVRRIARAV-----DLPVIADADTGYGNALNVARTVRELEE 95 (243)
T ss_pred HHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHH----HHHHHHhhc-----cCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3456999999876321 2555444333 334455554 3576665443 321 1567778
Q ss_pred cCCCEEEcCCC--------------CCHHH-------HHHHhCC--CeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCC
Q 016596 299 TGVDVVSLDWT--------------VDMAE-------GRRRLGP--DVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGR 354 (386)
Q Consensus 299 ~g~d~l~~d~~--------------~dl~e-------~~~~~g~--~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~ 354 (386)
.|+++++++.. .+.++ +++...+ ++.|....|.... ..+.||..+..+...+.+.+
T Consensus 96 ~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD 175 (243)
T cd00377 96 AGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGAD 175 (243)
T ss_pred cCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCC
Confidence 99999988321 23333 3444444 6888888777655 35778888888888887667
Q ss_pred CCeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 355 WKHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 355 ~g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
.-||.++- .+|.++++.++
T Consensus 176 ~v~v~~~~-------~~~~~~~~~~~ 194 (243)
T cd00377 176 GIFVEGLK-------DPEEIRAFAEA 194 (243)
T ss_pred EEEeCCCC-------CHHHHHHHHhc
Confidence 66665543 55777776654
No 265
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=69.15 E-value=67 Score=30.17 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=41.9
Q ss_pred HHHHHHhCCCEEEEec--CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc------hHHHHHhcCCCE
Q 016596 232 VQYQADNGAQAVQIFD--SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG------LLERLALTGVDV 303 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d--~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l~e~g~d~ 303 (386)
++.+.++|+|+|-+.- +.... .....+ -.....++++.+++.. +.|+++-+-+... ..+.+.+.|+|.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~~~-~~~~~~--~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNVGG-GRQLGQ--DPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCCCC-Cccccc--CHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4455667999887643 22111 111111 1234567777777653 5688887766543 246677889999
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+.+.
T Consensus 193 i~~~ 196 (289)
T cd02810 193 LTAI 196 (289)
T ss_pred EEEE
Confidence 8764
No 266
>PRK15447 putative protease; Provisional
Probab=68.98 E-value=55 Score=31.25 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe------cCCcchHHHHHhcCCCEE
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA------SGSGGLLERLALTGVDVV 304 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~------cG~~~~l~~l~e~g~d~l 304 (386)
+..++.+.|||.|+++....+. .. .|...-+++.++.+|++ |+.+.+-+ ......+..+.+.+++.+
T Consensus 20 ~~~~~~~~gaDaVY~g~~~~~~---R~--~f~~~~l~e~v~~~~~~--gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v 92 (301)
T PRK15447 20 FYQRAADSPVDIVYLGETVCSK---RR--ELKVGDWLELAERLAAA--GKEVVLSTLALVEAPSELKELRRLVENGEFLV 92 (301)
T ss_pred HHHHHHcCCCCEEEECCccCCC---cc--CCCHHHHHHHHHHHHHc--CCEEEEEecccccCHHHHHHHHHHHhcCCCEE
Confidence 4455667899999998654332 11 46667778888999987 45544422 222223555667777765
Q ss_pred EcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 305 SLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 305 ~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
-+...--+.-+++ .+ +.+.+.. ++---+ ..+.+.+...|-.++++ +++.+.+.|++|.+.
T Consensus 93 ~v~d~g~l~~~~e-~~--~~l~~d~--~lni~N-----~~a~~~l~~~G~~rv~l------s~ELsl~eI~~i~~~ 152 (301)
T PRK15447 93 EANDLGAVRLLAE-RG--LPFVAGP--ALNCYN-----AATLALLARLGATRWCM------PVELSRDWLANLLAQ 152 (301)
T ss_pred EEeCHHHHHHHHh-cC--CCEEEec--ccccCC-----HHHHHHHHHcCCcEEEE------CCcCCHHHHHHHHHh
Confidence 5543223444454 32 3454432 221122 22334444444234444 455667777777554
No 267
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=68.96 E-value=74 Score=29.13 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHH-hcC-CCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLA-LTG-VDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~-e~g-~d~l 304 (386)
.+|++.++++|+|.|.+.--... .+..++++.+++. |....+=.+-++. .+..++ ++. +-+.
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~------------~~~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~~vD~VLvM 137 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETIN------------GQAFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIHLLDKITVM 137 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCc------------chHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHhcCEEEEE
Confidence 38999999999998877422110 2345788899987 4555565555554 354444 332 2233
Q ss_pred EcCCC-----------CCHHHHHHHhCCC-----eeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-C
Q 016596 305 SLDWT-----------VDMAEGRRRLGPD-----VAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK-V 367 (386)
Q Consensus 305 ~~d~~-----------~dl~e~~~~~g~~-----~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~ 367 (386)
++++. .-+.++++.+..+ +.+=|||+. +.++++.+. |-..+|.+++.-.. .
T Consensus 138 sV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-----------~~i~~~~~a-Gad~~V~Gss~iF~~~ 205 (229)
T PRK09722 138 TVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-----------KTYEKLMEA-GADVFIVGTSGLFNLD 205 (229)
T ss_pred EEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-----------HHHHHHHHc-CCCEEEEChHHHcCCC
Confidence 44322 1244555554321 344455532 233344443 32355555331122 2
Q ss_pred CCcHHHHHHHHHHHHh
Q 016596 368 GTPEENVAHFFEVAKA 383 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~ 383 (386)
+.+.+.++.+.+.+++
T Consensus 206 ~d~~~~i~~l~~~~~~ 221 (229)
T PRK09722 206 EDIDEAWDIMTAQIEA 221 (229)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3467777777665543
No 268
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=68.88 E-value=1.4e+02 Score=30.31 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEec-CCcc--hHHHHHhcCCCEEEcCCC-C-
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYAS-GSGG--LLERLALTGVDVVSLDWT-V- 310 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~d~~-~- 310 (386)
..+.|++++...++++++..+++ ++.+++..+ +..+.+-+- ...+ .+..+.+.|++-+++.-. .
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~l--------l~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~ 185 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARL--------ITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFN 185 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCC
Confidence 46778888888889999876654 444444321 122222221 1122 578899999998877422 1
Q ss_pred -----------CHHHHHHHhCCCeeEEe--cCCcCc---c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHH
Q 016596 311 -----------DMAEGRRRLGPDVAVQG--NVDPGA---L-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEEN 373 (386)
Q Consensus 311 -----------dl~e~~~~~g~~~~l~G--~vd~~~---l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~En 373 (386)
+.+++.+.+.. +.=.| +|...+ | .-|.|++++.++.+++. +..+.-+- .-.+-++|+..+
T Consensus 186 d~vLk~lgR~~~~~~~~~~i~~-l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l-~~~~is~y-~L~~~pgT~l~~ 262 (449)
T PRK09058 186 TQVRRRAGRKDDREEVLARLEE-LVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDL-GLDGVDLY-ALNLLPGTPLAK 262 (449)
T ss_pred HHHHHHhCCCCCHHHHHHHHHH-HHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhc-CCCEEEEe-ccccCCCCHHHH
Confidence 33333333321 00012 222222 3 45677777776666553 32222222 245567787654
No 269
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=68.73 E-value=1.4e+02 Score=30.45 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC--Cc----c----hHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG--SG----G----LLER 295 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG--~~----~----~l~~ 295 (386)
+++..+++...+.|+|++-++|..- -.+-.++.++.+++.| ..+..-+|- +. . ....
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~ln-----------d~~n~~~ai~~ak~~G--~~~~~~i~yt~sp~~t~~y~~~~a~~ 171 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALN-----------DPRNIQQALRAVKKTG--KEAQLCIAYTTSPVHTLNYYLSLVKE 171 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCC-----------CHHHHHHHHHHHHHcC--CEEEEEEEEEeCCcCcHHHHHHHHHH
Confidence 5666678888899999999988653 2344566677888874 333344443 11 1 1345
Q ss_pred HHhcCCCEEEcCCC---CCHHHHHHHh
Q 016596 296 LALTGVDVVSLDWT---VDMAEGRRRL 319 (386)
Q Consensus 296 l~e~g~d~l~~d~~---~dl~e~~~~~ 319 (386)
+.++|++.+.+-.. ..+.++.+.+
T Consensus 172 l~~~Gad~I~IkDtaG~l~P~~v~~Lv 198 (468)
T PRK12581 172 LVEMGADSICIKDMAGILTPKAAKELV 198 (468)
T ss_pred HHHcCCCEEEECCCCCCcCHHHHHHHH
Confidence 66789999887322 3454444433
No 270
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=68.66 E-value=33 Score=30.70 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCCEEEE
Q 016596 229 AKYVQYQADNGAQAVQI 245 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i 245 (386)
.+.++.+.++|++.+.+
T Consensus 15 ~~~i~~l~~~g~d~lHi 31 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHI 31 (201)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 35566777899998875
No 271
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.64 E-value=26 Score=33.26 Aligned_cols=121 Identities=11% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
.+|.+||.+.++++. .|+|.+-++-.. -+....+ -++-+.-+++|-+.+ ++|.++|-.
T Consensus 152 ~~~T~peeA~~Fv~~--------------TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~I~~~~-----~iPLVlHGg 210 (284)
T PRK12737 152 AMYTNPDAAAEFVER--------------TGIDSLAVAIGTAHGLYKGE--PKLDFERLAEIREKV-----SIPLVLHGA 210 (284)
T ss_pred ccCCCHHHHHHHHHH--------------hCCCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCEEEeCC
Confidence 568999988877665 588876654322 1222100 022333444444433 579999965
Q ss_pred CCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 288 GSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 288 G~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-... .+...+++|+.=+|++.... ...+++.+... -+..||..+ ....+.+++.+++.|+.++
T Consensus 211 SG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (284)
T PRK12737 211 SGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYEN---PKANDPRKYMTPGKAAMKEVVREKIKVCG 279 (284)
T ss_pred CCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4443 46777889999999886432 23444444321 134676655 6777889999999999886
No 272
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=68.48 E-value=20 Score=35.15 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--------hHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--------LLERL 296 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--------~l~~l 296 (386)
.+...+|++.+.++|...||.+ +..|+.-.+-....++++++.+++. |..+++-+-+..- .+..+
T Consensus 13 ~~~~~~yi~~a~~~Gf~~iFTS-----L~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~~l~~lg~~~~dl~~~ 85 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFKRIFTS-----LHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPKVLKKLGISYDDLSFF 85 (357)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-----E---------HHHHHHHHHHHHHHC--T-EEEEEE-CCHHHTTT-BTTBTHHH
T ss_pred HHHHHHHHHHHHHCCCCEEECC-----CCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHH
Confidence 4556778888889998888753 4556666667778899999999998 5677777776531 26788
Q ss_pred HhcCCCEEEcCCCCCHHHHHHHhC
Q 016596 297 ALTGVDVVSLDWTVDMAEGRRRLG 320 (386)
Q Consensus 297 ~e~g~d~l~~d~~~dl~e~~~~~g 320 (386)
.++|++++=+|...+.+++.+...
T Consensus 86 ~~lGi~~lRlD~Gf~~~~ia~ls~ 109 (357)
T PF05913_consen 86 KELGIDGLRLDYGFSGEEIAKLSK 109 (357)
T ss_dssp HHHT-SEEEESSS-SCHHHHHHTT
T ss_pred HHcCCCEEEECCCCCHHHHHHHHh
Confidence 999999999999888777777553
No 273
>PRK09389 (R)-citramalate synthase; Provisional
Probab=68.48 E-value=18 Score=37.08 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l 304 (386)
.+.+++..++|++.|.++|+.+ .+.|..+.+++ ..+++.. ++++-+|++-+... . ..+ .+.|++.+
T Consensus 146 ~~~~~~~~~~Ga~~i~l~DTvG-~~~P~~~~~lv--------~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 146 KELYKAGIEAGADRICFCDTVG-ILTPEKTYELF--------KRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGADQV 215 (488)
T ss_pred HHHHHHHHhCCCCEEEEecCCC-CcCHHHHHHHH--------HHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCCEE
Confidence 3444455678999999988877 47777777653 2233322 46889999987652 2 222 46788877
Q ss_pred Ec-----CC---CCCHHHHHHHh
Q 016596 305 SL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 305 ~~-----d~---~~dl~e~~~~~ 319 (386)
+. .+ ..+++++.-.+
T Consensus 216 d~Ti~GiGERaGNa~lE~lv~~L 238 (488)
T PRK09389 216 HVTINGIGERAGNASLEEVVMAL 238 (488)
T ss_pred EEEcccccccccCccHHHHHHHH
Confidence 42 22 24666655544
No 274
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=68.43 E-value=78 Score=28.58 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.++.+.++|+|+|.+.+. .++ ++++.+++. +.++ +..+.+...+..+.+.|+|.+.++..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~----~~~------------~~~~~~~~~--~i~~-i~~v~~~~~~~~~~~~gad~i~~~~~ 131 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG----PPA------------EVVERLKAA--GIKV-IPTVTSVEEARKAEAAGADALVAQGA 131 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC----CCH------------HHHHHHHHc--CCEE-EEeCCCHHHHHHHHHcCCCEEEEeCc
Confidence 3445566789999988654 222 223344443 3454 44554444456677789988765321
Q ss_pred -----------C---CHHHHHHHhCCCeeEEecCCc
Q 016596 310 -----------V---DMAEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 310 -----------~---dl~e~~~~~g~~~~l~G~vd~ 331 (386)
. -+.++++.++..+++.|||.+
T Consensus 132 ~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~ 167 (236)
T cd04730 132 EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIAD 167 (236)
T ss_pred CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCC
Confidence 1 244555556556777888754
No 275
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=68.32 E-value=82 Score=28.75 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCEEEEec--CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhc-CC
Q 016596 228 MAKYVQYQADNGAQAVQIFD--SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALT-GV 301 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d--~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~-g~ 301 (386)
..++++.+.+.|++.+.+.+ ..++. +.+-+++.+++.+.. +.|+ -..|... .+..+.+. |+
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~------~g~~~~~i~~i~~~~-----~~pv--ia~GGi~~~~di~~~l~~~g~ 217 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTK------KGYDLELIRAVSSAV-----NIPV--IASGGAGKPEHFVEAFEEGGA 217 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCC------CCCCHHHHHHHHhhC-----CCCE--EEeCCCCCHHHHHHHHHhCCC
Confidence 34566777788999887754 11111 112344444444432 3563 3344432 35555554 88
Q ss_pred CEEEc-----CCCCCHHHHHHHh
Q 016596 302 DVVSL-----DWTVDMAEGRRRL 319 (386)
Q Consensus 302 d~l~~-----d~~~dl~e~~~~~ 319 (386)
+.+.+ +...++.++++.+
T Consensus 218 dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 218 DAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred CEEEEeHHHHcCCCCHHHHHHHH
Confidence 86654 3456788877765
No 276
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.29 E-value=46 Score=32.52 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHH---HHhh------HHHHHHHHHHHHhhC-CCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDF---EEFS------LPYLKQIVDTVKQTH-PDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f---~ef~------~P~~k~l~~~i~~~~-~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||..= +||. ..+..++++++++.- ++.++.+-+
T Consensus 132 I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi 211 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRL 211 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Confidence 444445555666777889999998854222 37777431 1222 445567777777753 233444333
Q ss_pred c-------CCc---c--hHHHHHhcCCCEEEc
Q 016596 287 S-------GSG---G--LLERLALTGVDVVSL 306 (386)
Q Consensus 287 c-------G~~---~--~l~~l~e~g~d~l~~ 306 (386)
. |.. . +...+.++|+|.+++
T Consensus 212 ~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 212 SMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2 221 1 236667789998877
No 277
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=68.22 E-value=20 Score=33.77 Aligned_cols=63 Identities=29% Similarity=0.364 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+-++..+++|+|.|++ |. |||++-++ .++.++-. ..+++-..|+.+ -+..++++|+|.+|+.
T Consensus 199 e~~~eAl~agaDiImL-DN----m~~e~~~~--------av~~l~~~---~~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 199 EEAEEALEAGADIIML-DN----MSPEELKE--------AVKLLGLA---GRALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred HHHHHHHHcCCCEEEe-cC----CCHHHHHH--------HHHHhccC---CceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 3445667889998874 43 67766554 34443222 257888889987 3899999999999886
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 263 a 263 (280)
T COG0157 263 A 263 (280)
T ss_pred c
Confidence 4
No 278
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=68.12 E-value=33 Score=31.44 Aligned_cols=88 Identities=23% Similarity=0.262 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHH
Q 016596 264 PYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITN 343 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~ 343 (386)
.+++++++.+++. |+.+.+++.-+...++.-+++|++.+.+... ....+. +.++..+
T Consensus 110 ~~l~~~i~~l~~~--gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG-~Ya~a~--------------------~~~~~~~ 166 (234)
T cd00003 110 EKLKPIIERLKDA--GIRVSLFIDPDPEQIEAAKEVGADRVELHTG-PYANAY--------------------DKAEREA 166 (234)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCcCEEEEech-hhhcCC--------------------CchhHHH
Confidence 3566677778886 6899999999988889999999999877532 111100 1133344
Q ss_pred HHHHHHHHcC---CCCeEEecCCCCCCCCcHHHHHHHH
Q 016596 344 RINDTVRKAG---RWKHILNLGHGIKVGTPEENVAHFF 378 (386)
Q Consensus 344 ~v~~~i~~~~---~~g~Ils~gc~i~~~tp~Eni~a~~ 378 (386)
+..++.+... .-|..++.||++ ..+|+..+.
T Consensus 167 el~~i~~aa~~a~~~GL~VnAGHgL----ny~Nv~~i~ 200 (234)
T cd00003 167 ELERIAKAAKLARELGLGVNAGHGL----NYENVKPIA 200 (234)
T ss_pred HHHHHHHHHHHHHHcCCEEecCCCC----CHHHHHHHH
Confidence 4555544432 568999999998 456776654
No 279
>PRK15108 biotin synthase; Provisional
Probab=67.82 E-value=1.2e+02 Score=29.44 Aligned_cols=71 Identities=25% Similarity=0.377 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV 304 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l 304 (386)
-+.+.++...+.|+..+.+.-.+ ..|. ..-.+|+.++++.+++. +..+. .+.|... .+..|++.|+|.+
T Consensus 80 EI~~~a~~~~~~G~~~i~i~~~g---~~p~---~~~~e~i~~~i~~ik~~--~i~v~-~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 80 QVLESARKAKAAGSTRFCMGAAW---KNPH---ERDMPYLEQMVQGVKAM--GLETC-MTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEEecC---CCCC---cchHHHHHHHHHHHHhC--CCEEE-EeCCcCCHHHHHHHHHcCCCEE
Confidence 33444555667899887653222 1331 12345788888888875 45544 5567665 4899999999977
Q ss_pred Ec
Q 016596 305 SL 306 (386)
Q Consensus 305 ~~ 306 (386)
++
T Consensus 151 n~ 152 (345)
T PRK15108 151 NH 152 (345)
T ss_pred ee
Confidence 65
No 280
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.72 E-value=1.1e+02 Score=28.93 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. .+.+. +++.++.+.+.+.. .+|+.+|.+-..+ .+..-++.|++.+.+
T Consensus 33 avi~AAee~~sPvIiq~~~~~~~~~g~----~~~~~~~~~~A~~~-----~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 33 VVVETAAELHSPVIIAGTPGTFSYAGT----EYLLAIVSAAAKQY-----HHPLALHLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred HHHHHHHHhCCCEEEEcChhHHhhCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 334455566777765322221 23332 23445555554443 5899999864433 467778899999988
Q ss_pred CCC-C----CHHHH------HHHhCCCeeE---EecC----Cc---C---ccCCCHHHHHHHHHHH-HHHcCCCCeEEec
Q 016596 307 DWT-V----DMAEG------RRRLGPDVAV---QGNV----DP---G---ALFGSKDFITNRINDT-VRKAGRWKHILNL 361 (386)
Q Consensus 307 d~~-~----dl~e~------~~~~g~~~~l---~G~v----d~---~---~l~gt~eev~~~v~~~-i~~~~~~g~Ils~ 361 (386)
|.. . +++.. ...+| +.+ .|-| +- . .++-+|||+++.+++. ++.+ -.=+++
T Consensus 104 DgS~l~~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiGt 178 (284)
T PRK09195 104 DGSHLPFAQNISLVKEVVDFCHRFD--VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSL---AVAIGT 178 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEE---eeccCc
Confidence 754 2 33322 22333 233 2222 11 1 1256899998888853 3332 122444
Q ss_pred CCCCC---CCCcHHHHHHHHHHH
Q 016596 362 GHGIK---VGTPEENVAHFFEVA 381 (386)
Q Consensus 362 gc~i~---~~tp~Eni~a~~~a~ 381 (386)
.|++- |...++.++.+.+++
T Consensus 179 ~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 179 AHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred cccccCCCCcCCHHHHHHHHHHh
Confidence 56653 456677766665543
No 281
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=67.61 E-value=1.2e+02 Score=29.16 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHh
Q 016596 240 AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRL 319 (386)
Q Consensus 240 ~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~ 319 (386)
.|.+.++.+...-++++.|. ++++.+++. ++++++-+.|.. |....+.+...+ .++..|+...+
T Consensus 130 ~d~VvlsGSlP~g~~~d~y~--------~li~~~~~~--g~~vilD~Sg~~--L~~~L~~~P~lI----KPN~~EL~~~~ 193 (310)
T COG1105 130 DDIVVLSGSLPPGVPPDAYA--------ELIRILRQQ--GAKVILDTSGEA--LLAALEAKPWLI----KPNREELEALF 193 (310)
T ss_pred CCEEEEeCCCCCCCCHHHHH--------HHHHHHHhc--CCeEEEECChHH--HHHHHccCCcEE----ecCHHHHHHHh
Confidence 46677777777778887665 467778886 577777776653 445555554443 56888999888
Q ss_pred CCCeeEEecCCcCccCCCHHHHHHHHHHHHHH
Q 016596 320 GPDVAVQGNVDPGALFGSKDFITNRINDTVRK 351 (386)
Q Consensus 320 g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~ 351 (386)
|.. ..+.+|+.+++++++..
T Consensus 194 g~~------------~~~~~d~i~~a~~l~~~ 213 (310)
T COG1105 194 GRE------------LTTLEDVIKAARELLAE 213 (310)
T ss_pred CCC------------CCChHHHHHHHHHHHHC
Confidence 753 34566999999996655
No 282
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=67.60 E-value=1.1e+02 Score=28.67 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhc
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALT 299 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~ 299 (386)
+++.+.++|+|++.+.|- +++. ..++.+.++++ |...++.+.-++. .+..+.+.
T Consensus 111 F~~~~~~aGvdgviipDL-----P~ee--------~~~~~~~~~~~--gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDL-----PYEE--------SDYLISVCNLY--NIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHcCCeEEEecCC-----CHHH--------HHHHHHHHHHc--CCCEEEEECCCCCHHHHHHHHHh
Confidence 555678899999998773 2222 44566777876 4566666655553 57666655
No 283
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=67.60 E-value=35 Score=32.43 Aligned_cols=119 Identities=14% Similarity=0.230 Sum_probs=74.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC--CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL--SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i--Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
.+|++||.+.++.+. .|+|.+-++-.. -+.. .| ++-+.-+++|-+.+ ++|.++|
T Consensus 152 ~~~T~peea~~Fv~~--------------TgvD~LAvaiGt~HG~Y~~~p----~Ldfd~l~~I~~~~-----~vPLVLH 208 (286)
T PRK12738 152 AFLTDPQEAKRFVEL--------------TGVDSLAVAIGTAHGLYSKTP----KIDFQRLAEIREVV-----DVPLVLH 208 (286)
T ss_pred hcCCCHHHHHHHHHH--------------hCCCEEEeccCcccCCCCCCC----cCCHHHHHHHHHHh-----CCCEEEe
Confidence 568999988776553 388876654322 1222 22 23344455554444 5799999
Q ss_pred ecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 286 ASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 286 ~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-.-... .+....++|+.=+|++...- ...+++.+... -+..||..+ ....+.+++.+++.|+.++
T Consensus 209 GgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (286)
T PRK12738 209 GASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAEN---PQGNDPRYYMRVGMDAMKEVVRNKINVCG 279 (286)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 754443 46777889999899875432 23344444221 123677655 6777889999999999886
No 284
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=67.58 E-value=1.1e+02 Score=29.59 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=38.3
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC-cEEEEecCCcc--hHHHHHhcCCCEE--Ec
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL-SLILYASGSGG--LLERLALTGVDVV--SL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~-~~~~H~cG~~~--~l~~l~e~g~d~l--~~ 306 (386)
++.+.+.|+..|.+.. --.++.++ +.++++.+++.+ +. .+.+.+.|... .++.+.+.|++.+ |+
T Consensus 54 i~~~~~~Gv~~I~~tG-GEPllr~d---------l~~li~~i~~~~-~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISl 122 (329)
T PRK13361 54 AQAFTELGVRKIRLTG-GEPLVRRG---------CDQLVARLGKLP-GLEELSLTTNGSRLARFAAELADAGLKRLNISL 122 (329)
T ss_pred HHHHHHCCCCEEEEEC-cCCCcccc---------HHHHHHHHHhCC-CCceEEEEeChhHHHHHHHHHHHcCCCeEEEEe
Confidence 3344567888887743 11245443 234566666653 32 35566777532 4688889999866 44
Q ss_pred CC
Q 016596 307 DW 308 (386)
Q Consensus 307 d~ 308 (386)
|.
T Consensus 123 Ds 124 (329)
T PRK13361 123 DT 124 (329)
T ss_pred cc
Confidence 53
No 285
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=67.28 E-value=74 Score=31.83 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 157 EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 157 ~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
.+|++.+.+++++..++.|..+-...+++++.. .+ ++.++...
T Consensus 191 ~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~---em----------------------------------~~ra~~~~ 233 (406)
T cd08207 191 DERVRAVMRVINDHAQRTGRKVMYAFNITDDID---EM----------------------------------RRNHDLVV 233 (406)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEecCCCHH---HH----------------------------------HHHHHHHH
Confidence 356778889999999998876555556665421 11 12233456
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc----------c--hHHHH-HhcCCCE
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG----------G--LLERL-ALTGVDV 303 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----------~--~l~~l-~e~g~d~ 303 (386)
++|++.+++.-...+ ++. ++.+.+ . .+.++..|-.|.- . .+-.| .=.|+|.
T Consensus 234 ~~G~~~~mv~~~~~G-~~~----------l~~l~~----~-~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~ 297 (406)
T cd08207 234 EAGGTCVMVSLNSVG-LSG----------LAALRR----H-SQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDH 297 (406)
T ss_pred HhCCCeEEEeccccc-hHH----------HHHHHh----c-CCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCc
Confidence 789998876433333 221 222222 1 1467766655431 1 12222 2358888
Q ss_pred EEcCCC---C-----CHHHHHHHhCCCeeEEec-CCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCC
Q 016596 304 VSLDWT---V-----DMAEGRRRLGPDVAVQGN-VDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVG 368 (386)
Q Consensus 304 l~~d~~---~-----dl~e~~~~~g~~~~l~G~-vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~ 368 (386)
+++... . +...+.+.+-. =+|+ +.+.+- . -++.. +.++++.+|..-+|+..|-++ -|+
T Consensus 298 ~~~~~~~Gkf~~~~~~~~~~~~~~~~---p~~~~~k~~~Pv~sgG~~~~~----vp~~~~~~G~~Dvi~~aGGGi~gHP~ 370 (406)
T cd08207 298 LHVNGLASKFWESDDSVIESARACLT---PLGGPDDAAMPVFSSGQWGGQ----APPTYRRLGSVDLLYLAGGGIMAHPD 370 (406)
T ss_pred cccCCCcCCcCCCcHHHHHHHHHHhC---chhccCCCeeEeccCCCCHhH----HHHHHHHhCCCceEEecCCceecCCC
Confidence 876321 1 11222232221 1445 555441 1 12332 344555565346788888787 478
Q ss_pred CcHHHHHHHHHHHHh
Q 016596 369 TPEENVAHFFEVAKA 383 (386)
Q Consensus 369 tp~Eni~a~~~a~~~ 383 (386)
-+.+..+|+.+|+..
T Consensus 371 G~~aGa~A~rqA~ea 385 (406)
T cd08207 371 GPAAGVRSLRQAWEA 385 (406)
T ss_pred CchhHHHHHHHHHHH
Confidence 889999999887754
No 286
>PRK10425 DNase TatD; Provisional
Probab=67.20 E-value=1e+02 Score=28.62 Aligned_cols=112 Identities=5% Similarity=-0.086 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhc--C--CCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc-CC
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALT--G--VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL-FG 336 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~--g--~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l-~g 336 (386)
...+++.++.++++ +.|+++|+-+... .++.+.+. . -.++++.. .+.+.+++.+.-.. .. +|.+..+ ..
T Consensus 107 ~~vF~~ql~lA~~~--~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fs-G~~~~~~~~l~~G~-~~-si~g~i~~~~ 181 (258)
T PRK10425 107 ERAFVAQLAIAAEL--NMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFT-GTREEMQACLARGL-YI-GITGWVCDER 181 (258)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecC-CCHHHHHHHHHCCC-EE-EECceeeccc
Confidence 34566677777776 6899999998886 47777764 1 23556543 47777777654321 11 1333222 22
Q ss_pred CHHHHHHHHHHHHHHcCCCCeEEecCCCCC-C----------CCcHHHHHHHHHHHHh
Q 016596 337 SKDFITNRINDTVRKAGRWKHILNLGHGIK-V----------GTPEENVAHFFEVAKA 383 (386)
Q Consensus 337 t~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~----------~tp~Eni~a~~~a~~~ 383 (386)
...++++.+ +...-.+.++-++.... | ...|.++...++.+.+
T Consensus 182 ~~~~~~~~~----~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~ 235 (258)
T PRK10425 182 RGLELRELL----PLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAH 235 (258)
T ss_pred ccHHHHHHH----HhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 233444444 44332355666655421 1 1346777766666543
No 287
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=67.16 E-value=22 Score=36.90 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l 304 (386)
.+.+++..++|++.|.++|+.+ ...|..+.+++. .+++..+..++-+|++-+..+ + ..+ .+.|++.+
T Consensus 157 ~~~~~~a~~aGad~i~i~DTvG-~~~P~~v~~li~--------~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 157 LATLATAQQAGADWLVLCDTNG-GTLPHEISEITT--------KVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred HHHHHHHHhCCCCeEEEecCCC-CcCHHHHHHHHH--------HHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 3344445689999999998776 577887776533 333322223478999987653 2 333 46788877
Q ss_pred E
Q 016596 305 S 305 (386)
Q Consensus 305 ~ 305 (386)
+
T Consensus 228 d 228 (526)
T TIGR00977 228 Q 228 (526)
T ss_pred E
Confidence 4
No 288
>PRK00915 2-isopropylmalate synthase; Validated
Probab=67.09 E-value=18 Score=37.42 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.+.+++..++|++.|.++|+.+. +.|..+.+++.-. .+.+... .++++-+|++-+..+ + ..+ .+.|+
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~~~i~~l----~~~~~~~-~~v~l~~H~HND~GlAvANslaAv~aGa 222 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGY-TTPEEFGELIKTL----RERVPNI-DKAIISVHCHNDLGLAVANSLAAVEAGA 222 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCC-CCHHHHHHHHHHH----HHhCCCc-ccceEEEEecCCCCHHHHHHHHHHHhCC
Confidence 34455556677889999999888775 6777776655332 2223211 126789999987652 2 222 46798
Q ss_pred CEEEc-----CC---CCCHHHHHHHh
Q 016596 302 DVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~ 319 (386)
+.++. .+ ..+++++.-.+
T Consensus 223 ~~Vd~Tv~GlGERaGNa~lE~vv~~L 248 (513)
T PRK00915 223 RQVECTINGIGERAGNAALEEVVMAL 248 (513)
T ss_pred CEEEEEeecccccccCccHHHHHHHH
Confidence 87742 22 25677666555
No 289
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.93 E-value=23 Score=33.58 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVS 305 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~ 305 (386)
..+.++..+++|+|.|++ | -+||++-++.+. .+++.. ..+.+=..|+.+ .+..++++|+|+++
T Consensus 198 tleqa~ea~~agaDiI~L-D----n~~~e~l~~av~--------~~~~~~--~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL-D----KFSPQQATEIAQ--------IAPSLA--PHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHHcCCCEEEE-C----CCCHHHHHHHHH--------HhhccC--CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 445566677899999886 3 378888777553 333222 235677888887 38999999999998
Q ss_pred cCC
Q 016596 306 LDW 308 (386)
Q Consensus 306 ~d~ 308 (386)
...
T Consensus 263 ~ga 265 (284)
T PRK06096 263 TSA 265 (284)
T ss_pred ECc
Confidence 754
No 290
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=66.85 E-value=99 Score=27.92 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCC-CCHHHHHHHhCCCeeEEecCCcCccCCCHHH
Q 016596 264 PYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWT-VDMAEGRRRLGPDVAVQGNVDPGALFGSKDF 340 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~-~dl~e~~~~~g~~~~l~G~vd~~~l~gt~ee 340 (386)
++...+++.+|+. |+.+.+.++|... .+..+.++ +|.+.+|-. +|...-++..| ++.+-
T Consensus 54 ~fl~~l~~~~k~~--gi~~~leTnG~~~~~~~~~l~~~-~D~~l~DiK~~d~~~~~~~tG---------------~~~~~ 115 (213)
T PRK10076 54 EFATRFLQRLRLW--GVSCAIETAGDAPASKLLPLAKL-CDEVLFDLKIMDATQARDVVK---------------MNLPR 115 (213)
T ss_pred HHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHh-cCEEEEeeccCCHHHHHHHHC---------------CCHHH
Confidence 4556667777876 6889999999865 36666654 677766644 35444333333 12345
Q ss_pred HHHHHHHHHHHcCCCCeEEecCCCCCC-CCcHHHHHHHHHHHHhhc
Q 016596 341 ITNRINDTVRKAGRWKHILNLGHGIKV-GTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 341 v~~~v~~~i~~~~~~g~Ils~gc~i~~-~tp~Eni~a~~~a~~~yg 385 (386)
|.+-.+.+.+. +..+.+-.- -+|. +-.+|+++++.+.+++++
T Consensus 116 il~nl~~l~~~--g~~v~iR~~-vIPg~nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 116 VLENLRLLVSE--GVNVIPRLP-LIPGFTLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHHHHHhC--CCcEEEEEE-EECCCCCCHHHHHHHHHHHHHcC
Confidence 55555444332 223333211 1222 346788888887777653
No 291
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=66.82 E-value=91 Score=27.78 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=61.1
Q ss_pred HHHHHHhCCCEEEEec-CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCC
Q 016596 232 VQYQADNGAQAVQIFD-SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTV 310 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d-~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~ 310 (386)
++.+.++|||++.++. ...+-|..+.-+ -++...+ +.|+.+|--=+.. .|+..
T Consensus 87 v~llk~~GAdGfVFGaLt~dgsid~~~C~--------si~~~~r----plPVTFHRAfD~~--------------~D~k~ 140 (255)
T KOG4013|consen 87 VELLKKAGADGFVFGALTSDGSIDRTSCQ--------SIIETAR----PLPVTFHRAFDVA--------------YDWKT 140 (255)
T ss_pred HHHHHHcCCCceEEeecCCCCCcCHHHHH--------HHHHhcC----CCceeeeeehhhh--------------cCHHH
Confidence 4456789999987654 223456644322 2233332 4688888542211 01222
Q ss_pred CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHH
Q 016596 311 DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAH 376 (386)
Q Consensus 311 dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a 376 (386)
-++.+...+|-+..+.-|.+|..|.|- .-++++++.. .|.+++.|||+|- ....+||..
T Consensus 141 ~lE~~l~~lGF~rvLtSG~~psAldGv-----~~i~~lie~h-kg~i~VmpG~Gi~-~sNl~~ile 199 (255)
T KOG4013|consen 141 CLEDALLDLGFKRVLTSGQEPSALDGV-----YIIRELIELH-KGKIDVMPGCGIN-SSNLANILE 199 (255)
T ss_pred HHHHHHHHhhHHHHhhcCCCcccccch-----HHHHHHHHHh-cCCEEEecCCCcc-hHHHHHHHh
Confidence 222233334444456667888776553 2345566654 5689999999983 445555543
No 292
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.63 E-value=33 Score=32.50 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=74.3
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC-C-HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL-S-PVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i-S-p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
.++.+||.+.++++ +.|+|.+-++-.. -+.. + | ++=+.-+++|-+.+ ++|.++|
T Consensus 152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~p----~Ld~~~L~~I~~~~-----~vPLVLH 208 (284)
T PRK09195 152 ALYTDPAQAREFVE--------------ATGIDSLAVAIGTAHGMYKGEP----KLDFDRLENIRQWV-----NIPLVLH 208 (284)
T ss_pred ccCCCHHHHHHHHH--------------HHCcCEEeeccCccccccCCCC----cCCHHHHHHHHHHh-----CCCeEEe
Confidence 46899998887766 5688876654322 1222 1 2 23344555555544 5799999
Q ss_pred ecCCcc--hHHHHHhcCCCEEEcCCCCCH---HHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 286 ASGSGG--LLERLALTGVDVVSLDWTVDM---AEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 286 ~cG~~~--~l~~l~e~g~d~l~~d~~~dl---~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-.-... .+...++.|+.=+|+...... ..+++.+... -+.+||..+ ....+.+++.+++.|+.++
T Consensus 209 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 279 (284)
T PRK09195 209 GASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEH---PEANDPRHYLQPAKSAMKDVVSKVIADCG 279 (284)
T ss_pred cCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 654443 467778899998888754321 2334434211 123677655 5667899999999999886
No 293
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=66.56 E-value=89 Score=27.30 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
.+.++..++.|++.+++-+.. .+...+++ ..+++.+.++.. +.++++|. .++...++|.+++++..
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~---~~~~~~~~----~~~~l~~~~~~~--~~~l~i~~-----~~~la~~~g~~GvHl~~ 81 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKG---SNTRERLA----LAEKLQELCRRY--GVPFIVND-----RVDLALALGADGVHLGQ 81 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCC---CCHHHHHH----HHHHHHHHHHHh--CCeEEEEC-----HHHHHHHcCCCEEecCc
Confidence 345566888999998875532 34443333 445566666655 46777764 35666788998888854
Q ss_pred C-CCHHHHHHHhC
Q 016596 309 T-VDMAEGRRRLG 320 (386)
Q Consensus 309 ~-~dl~e~~~~~g 320 (386)
. .+...+++.++
T Consensus 82 ~~~~~~~~r~~~~ 94 (196)
T TIGR00693 82 DDLPASEARALLG 94 (196)
T ss_pred ccCCHHHHHHhcC
Confidence 3 45555555443
No 294
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=66.50 E-value=19 Score=37.09 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCEEEEecCC---cCCCCHHHHHHhhH-HHHHHHHHHHHhhCCCCcEEEEecCCc----chHHHHHhcCC
Q 016596 230 KYVQYQADNGAQAVQIFDSW---ATELSPVDFEEFSL-PYLKQIVDTVKQTHPDLSLILYASGSG----GLLERLALTGV 301 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~---~~~iSp~~f~ef~~-P~~k~l~~~i~~~~~~~~~~~H~cG~~----~~l~~l~e~g~ 301 (386)
+..+.+.+.+...+.+.|+- -++++.+...+... |.--+ ..+... |-..+-=.+|.. ...+.+.+.|+
T Consensus 186 eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~---~~~d~~-~~l~vgaavg~~~~~~~r~~~l~~ag~ 261 (505)
T PLN02274 186 EAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGK---PSVGKD-GKLLVGAAIGTRESDKERLEHLVKAGV 261 (505)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccc---cccCCC-CCEEEEEEEcCCccHHHHHHHHHHcCC
Confidence 44455666777777766643 35788777655432 11100 011111 222222234432 24788899999
Q ss_pred CEEEcCCC--------CCHHHHHHHhCCCeeEEecCC
Q 016596 302 DVVSLDWT--------VDMAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 302 d~l~~d~~--------~dl~e~~~~~g~~~~l~G~vd 330 (386)
|++.+|-. ..++++|+.+++-.+++|||.
T Consensus 262 d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~ 298 (505)
T PLN02274 262 DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV 298 (505)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 99988743 147888988887666789984
No 295
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=66.23 E-value=40 Score=32.16 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE--EEecCCcc-h-HHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI--LYASGSGG-L-LERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~--~H~cG~~~-~-l~~l~e~g~ 301 (386)
+-.++.++++.++|||+||+. +.-|+++.++ +.+.+. .|+. +..-|... . ++.+.++|+
T Consensus 165 deaI~Ra~aY~eAGAD~ifi~----~~~~~~ei~~--------~~~~~~-----~P~~~nv~~~~~~p~~s~~eL~~lG~ 227 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFLE----AMLDVEEMKR--------VRDEID-----APLLANMVEGGKTPWLTTKELESIGY 227 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEec----CCCCHHHHHH--------HHHhcC-----CCeeEEEEecCCCCCCCHHHHHHcCC
Confidence 345566778899999999973 2456666444 444442 2542 23334443 3 799999999
Q ss_pred CEEEcCC
Q 016596 302 DVVSLDW 308 (386)
Q Consensus 302 d~l~~d~ 308 (386)
..+++..
T Consensus 228 ~~v~~~~ 234 (294)
T TIGR02319 228 NLAIYPL 234 (294)
T ss_pred cEEEEcH
Confidence 9887754
No 296
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.13 E-value=18 Score=34.04 Aligned_cols=64 Identities=25% Similarity=0.264 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|.|++ |. +||+..++. ++.++... ..+.+-..|+.+ .+..++++|+|++++.
T Consensus 193 eea~~A~~~GaDiI~L-Dn----~~~e~l~~~--------v~~~~~~~--~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMC-DN----MSVEEIKEV--------VAYRNANY--PHVLLEASGNITLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEE-CC----CCHHHHHHH--------HHHhhccC--CCeEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 3445556789998874 33 466665544 44344321 235677888887 4899999999999876
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 258 ~ 258 (273)
T PRK05848 258 S 258 (273)
T ss_pred h
Confidence 4
No 297
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=66.00 E-value=33 Score=32.52 Aligned_cols=119 Identities=14% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCC-CC-HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATE-LS-PVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~-iS-p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
.++++||.+.++++ +.|+|.+-++-.. -+. -+ | ++=++-+++|-+.+ ++|.++|
T Consensus 150 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p----~Ldf~~L~~I~~~~-----~iPLVlH 206 (282)
T TIGR01858 150 ALYTDPQEAKEFVE--------------ATGVDSLAVAIGTAHGLYKKTP----KLDFDRLAEIREVV-----DVPLVLH 206 (282)
T ss_pred hccCCHHHHHHHHH--------------HHCcCEEecccCccccCcCCCC----ccCHHHHHHHHHHh-----CCCeEEe
Confidence 56899998777655 4588876654322 121 12 2 33444555554444 5799999
Q ss_pred ecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 286 ASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 286 ~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-+-... .+....++|+.=+|++...- ...+++.+..+ -+.+||..+ ..-.+.+++.+++.|+.++
T Consensus 207 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 277 (282)
T TIGR01858 207 GASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAEN---PQANDPRYYMRPGKDAMKKVVRNKINVCG 277 (282)
T ss_pred cCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 764443 46777889999899875432 13344444321 123666554 5667889999999999886
No 298
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=66.00 E-value=1.1e+02 Score=27.99 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVS 305 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~ 305 (386)
.++++.+.+.|++.+.+.|-.+.... .+...+++..+.+.. +.| +..+|... .+..+.+.|++.+.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~--------~~~~~~~i~~i~~~~-~~p--v~~~GGI~s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEG--------RETMLDVVERVAEEV-FIP--LTVGGGIRSLEDARRLLRAGADKVS 98 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCccccc--------CcccHHHHHHHHHhC-CCC--EEEeCCCCCHHHHHHHHHcCCceEE
Confidence 34666677889999999885543111 133344455554432 345 45777765 25666778988776
Q ss_pred cCCC--CC---HHHHHHHhCC-CeeE
Q 016596 306 LDWT--VD---MAEGRRRLGP-DVAV 325 (386)
Q Consensus 306 ~d~~--~d---l~e~~~~~g~-~~~l 325 (386)
+... .+ +.++.+.++. ++.+
T Consensus 99 ig~~~~~~p~~~~~i~~~~~~~~i~~ 124 (243)
T cd04731 99 INSAAVENPELIREIAKRFGSQCVVV 124 (243)
T ss_pred ECchhhhChHHHHHHHHHcCCCCEEE
Confidence 6432 12 4566777764 4443
No 299
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.00 E-value=1.4e+02 Score=29.27 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
..+.++..++.|+..|++-+.. .+...+.+.+ +++.+.++++ +.++++|- .++.-..+|+|++|+.
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~---~~~~~~~~~a----~~L~~l~~~~--~~~lIIND-----~vdlAl~~~aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKT---ADDRQRLEEA----KKLKELCHRY--GALFIVND-----RVDIALAVDADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCC---CCHHHHHHHH----HHHHHHHHHh--CCeEEEeC-----hHHHHHHcCCCEEEeC
Confidence 4455677888999998875543 3544444433 3445555554 46666663 2566677899999986
Q ss_pred CC-CCHHHHHHHhCCCeeE
Q 016596 308 WT-VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 308 ~~-~dl~e~~~~~g~~~~l 325 (386)
.. ..+.++++.+|.+..+
T Consensus 225 q~dl~~~~aR~llg~~~iI 243 (347)
T PRK02615 225 QEDLPLAVARQLLGPEKII 243 (347)
T ss_pred hhhcCHHHHHHhcCCCCEE
Confidence 53 4567778777765433
No 300
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=65.75 E-value=51 Score=31.16 Aligned_cols=38 Identities=8% Similarity=0.317 Sum_probs=27.3
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEec
Q 016596 210 AFSQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFD 247 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d 247 (386)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+..
T Consensus 135 ~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred ccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 346777777777777654 44667777889999987754
No 301
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=65.52 E-value=28 Score=32.86 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
.+.++..+++|+|.|++ | -+||++-++ .++.+++.. ..+.+=..|+.+ .+..++++|+|+++.
T Consensus 198 leea~ea~~~GaDiI~l-D----n~~~e~l~~--------~v~~l~~~~--~~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 198 IEQALTVLQASPDILQL-D----KFTPQQLHH--------LHERLKFFD--HIPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred HHHHHHHHHcCcCEEEE-C----CCCHHHHHH--------HHHHHhccC--CCEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 34556667899999885 4 267766554 445554432 245678889887 489999999999987
Q ss_pred CC
Q 016596 307 DW 308 (386)
Q Consensus 307 d~ 308 (386)
..
T Consensus 263 ga 264 (277)
T TIGR01334 263 SA 264 (277)
T ss_pred Cc
Confidence 64
No 302
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=65.45 E-value=1.7e+02 Score=30.10 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEecCC---cc--hHHHHHhcCCCEEEcCC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYASGS---GG--LLERLALTGVDVVSLDW 308 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~cG~---~~--~l~~l~e~g~d~l~~d~ 308 (386)
+++.|+++....+.++++.+++++. .+++..+ +..-+.-.+|+ .+ .+..+.+.|++-+++..
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll~--------~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGv 287 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLLE--------EIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINP 287 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHHH--------HHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcC
Confidence 4566777777777899988776543 3322210 11112223454 23 47899999999887753
No 303
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=65.42 E-value=69 Score=30.28 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
-+++.++.+++..+..++.+=. .+........+.|+|++-+|.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv-~tleea~ea~~~GaDiI~lDn 216 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA-DTIEQALTVLQASPDILQLDK 216 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC-CCHHHHHHHHHcCcCEEEECC
Confidence 3555556665543222322222 122223444556666666663
No 304
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=65.36 E-value=2.6e+02 Score=32.22 Aligned_cols=146 Identities=17% Similarity=0.275 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHh----hCCCCcEEEE-ec----CCc-
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ----THPDLSLILY-AS----GSG- 290 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~----~~~~~~~~~H-~c----G~~- 290 (386)
.+.+.+...+.++.+++.|+|.|.+ ++..+ ...- |..+.++++ .+.+.|+++. .+ |..
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~ili-ETi~d---~~Ea--------kAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~ 210 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLI-ETCFD---TLNA--------KAALFAAETVFEEKGRELPIMISGTIVDTSGRTL 210 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-eccCC---HHHH--------HHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeC
Confidence 3557777778888889999998764 54432 2221 122233322 1224677765 32 322
Q ss_pred --c----hHHHHHhcCCCEEEcCCCCC---HHHHHHHh----CCCeeEEec--CCcC-cc-CCCHHHHHHHHHHHHHHcC
Q 016596 291 --G----LLERLALTGVDVVSLDWTVD---MAEGRRRL----GPDVAVQGN--VDPG-AL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 291 --~----~l~~l~e~g~d~l~~d~~~d---l~e~~~~~----g~~~~l~G~--vd~~-~l-~gt~eev~~~v~~~i~~~~ 353 (386)
. .+..+...+++++.+.=... +..+-+.+ ..-+.+.-| ++.. .. ..||++..+.+++.++..+
T Consensus 211 ~G~~~~~~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~gg 290 (1178)
T TIGR02082 211 SGQTIEAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGG 290 (1178)
T ss_pred CCCcHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCC
Confidence 1 23444567888876653322 33332333 222222222 2211 12 4799999999999988642
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
--|++ ||. +|.||.|+++.++++.+
T Consensus 291 --v~IIG-GCC---GTtPeHI~ala~~l~~~ 315 (1178)
T TIGR02082 291 --LNIVG-GCC---GTTPDHIRAIAEAVKNI 315 (1178)
T ss_pred --CcEEE-ecC---CCCHHHHHHHHHHhhcC
Confidence 33555 454 56899999999998754
No 305
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=65.16 E-value=1.6e+02 Score=29.79 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=56.5
Q ss_pred HHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCC-CCCHHHHHHHhCCCeeEEecCCcCccCCC-HHH-HHHH
Q 016596 270 VDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDW-TVDMAEGRRRLGPDVAVQGNVDPGALFGS-KDF-ITNR 344 (386)
Q Consensus 270 ~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~-~~dl~e~~~~~g~~~~l~G~vd~~~l~gt-~ee-v~~~ 344 (386)
+..+++..++..+.+-++|... .++.|.++|+|.+.++- .+|.+.-++.++- + -.+|- .+.|. .+. ..+.
T Consensus 101 l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~-v-~~~g~---~~tG~~~~~il~e~ 175 (442)
T TIGR01290 101 LELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPW-V-WYEGE---RYTGREAADLLIER 175 (442)
T ss_pred HHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchh-h-ccccc---cccCcchHHHHHHH
Confidence 3344443335677888899743 57889999999776643 3565555444321 0 01110 11111 111 1333
Q ss_pred HHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 345 INDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 345 v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
+.+.|+.+...|..+..-..+-|+...+++.++.+.+++.|
T Consensus 176 ~l~~l~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg 216 (442)
T TIGR01290 176 QLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKQVKELG 216 (442)
T ss_pred HHHHHHHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC
Confidence 44444433311222222233344555688888888888765
No 306
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.12 E-value=22 Score=33.85 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|+|++ |. |||++-++.+ +.+++ .+.+-..|+++ .+..++++|+|+++..
T Consensus 208 eea~~a~~agaDiImL-Dn----mspe~l~~av--------~~~~~-----~~~leaSGGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 208 AAAEEAAAAGADIIML-DN----MSLEQIEQAI--------TLIAG-----RSRIECSGNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHcCCCEEEE-CC----CCHHHHHHHH--------HHhcC-----ceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 4555667889999874 32 6787765544 33432 24678889887 4899999999999875
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 270 a 270 (290)
T PRK06559 270 S 270 (290)
T ss_pred c
Confidence 3
No 307
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=65.02 E-value=1.3e+02 Score=28.48 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC-cEEEEecCCcc--hHHHHHhcCCCEE--EcCC
Q 016596 236 ADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL-SLILYASGSGG--LLERLALTGVDVV--SLDW 308 (386)
Q Consensus 236 ~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~-~~~~H~cG~~~--~l~~l~e~g~d~l--~~d~ 308 (386)
.+.|+..|.+.. .-.++.++ +.++++.+++. +. .+.+.+.|... .++.+.+.|++.+ |+|.
T Consensus 53 ~~~gi~~I~~tG-GEPll~~~---------l~~iv~~l~~~--g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~ 118 (302)
T TIGR02668 53 SEFGVRKVKITG-GEPLLRKD---------LIEIIRRIKDY--GIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDT 118 (302)
T ss_pred HHcCCCEEEEEC-cccccccC---------HHHHHHHHHhC--CCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecC
Confidence 356888777643 11245443 34566666665 33 45566666532 3577788898866 4453
No 308
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=64.28 E-value=70 Score=31.20 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHH----------------
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT---------------- 225 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~---------------- 225 (386)
.+++|++++ +.+.+.+ =-+++.|-..|. .|+ | =..|.++||+|++++..+.
T Consensus 87 ~ll~Aa~lv-~~y~D~i--dlNcGCPq~~a~--~g~-----y---Ga~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d 153 (358)
T KOG2335|consen 87 NLLKAARLV-QPYCDGI--DLNCGCPQKVAK--RGG-----Y---GAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVD 153 (358)
T ss_pred HHHHHHHHh-hhhcCcc--cccCCCCHHHHh--cCC-----c---cceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCc
Confidence 345555544 4455543 337888944432 232 2 1467899999999999886
Q ss_pred -HHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHH
Q 016596 226 -TSMAKYVQYQADNGAQAVQIFDSW----ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLA 297 (386)
Q Consensus 226 -~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~ 297 (386)
+-.++|++.+.++|++.+.+..-. +....|-.| ++++.+.+.+. . +-+-.-||+.. .+...
T Consensus 154 ~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~-----~~i~~v~~~~~----~--ipviaNGnI~~~~d~~~~~ 222 (358)
T KOG2335|consen 154 LEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADW-----EAIKAVRENVP----D--IPVIANGNILSLEDVERCL 222 (358)
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCH-----HHHHHHHHhCc----C--CcEEeeCCcCcHHHHHHHH
Confidence 456789998889999998886522 223444333 34444444442 2 44667899862 45555
Q ss_pred h-cCCCEEEc
Q 016596 298 L-TGVDVVSL 306 (386)
Q Consensus 298 e-~g~d~l~~ 306 (386)
+ +|++++-.
T Consensus 223 ~~tG~dGVM~ 232 (358)
T KOG2335|consen 223 KYTGADGVMS 232 (358)
T ss_pred HHhCCceEEe
Confidence 5 89997743
No 309
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=64.24 E-value=68 Score=29.58 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc------------------
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG------------------ 290 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~------------------ 290 (386)
.+.++.++++|+++|.+-|.. + ..+.++.+++. +++++-|+.-..
T Consensus 92 ~~~~~~l~~aGa~gv~iED~~----------~-----~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 92 FELAKTFMRAGAAGVKIEGGE----------W-----HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHHHHcCCcEEEEcCcH----------H-----HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 344566778999999986641 1 22346666665 478888887421
Q ss_pred --chH---HHHHhcCCCEEEcCCCCCHHHHHHHhCC-CeeEEec
Q 016596 291 --GLL---ERLALTGVDVVSLDWTVDMAEGRRRLGP-DVAVQGN 328 (386)
Q Consensus 291 --~~l---~~l~e~g~d~l~~d~~~dl~e~~~~~g~-~~~l~G~ 328 (386)
..+ ..+.+.|+|++-++.. +.+++++.... ++.+.|+
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~~P~~~~ 197 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV-PVELAKQITEALAIPLAGI 197 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCCCCEEEE
Confidence 112 3445779999888744 77666654431 2345444
No 310
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.22 E-value=76 Score=25.65 Aligned_cols=74 Identities=8% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCC
Q 016596 233 QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTV 310 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~ 310 (386)
++..+.+++.|.++-.. ....+..+++++.+++.+.. .+.+..+|+.. ..+.+.++|+|.+ ++...
T Consensus 44 ~~a~~~~~d~V~iS~~~----------~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~~~~~~~~~G~d~~-~~~~~ 111 (122)
T cd02071 44 EAAIQEDVDVIGLSSLS----------GGHMTLFPEVIELLRELGAG-DILVVGGGIIPPEDYELLKEMGVAEI-FGPGT 111 (122)
T ss_pred HHHHHcCCCEEEEcccc----------hhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHCCCCEE-ECCCC
Confidence 34456788887763221 23344567888888886432 35577777654 3788899999865 23334
Q ss_pred CHHHHHHH
Q 016596 311 DMAEGRRR 318 (386)
Q Consensus 311 dl~e~~~~ 318 (386)
+++++...
T Consensus 112 ~~~~~~~~ 119 (122)
T cd02071 112 SIEEIIDK 119 (122)
T ss_pred CHHHHHHH
Confidence 55555443
No 311
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=64.14 E-value=1.3e+02 Score=29.58 Aligned_cols=165 Identities=17% Similarity=0.113 Sum_probs=90.1
Q ss_pred CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 157 EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 157 ~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
.+|++.+.+++++..++.|..+-...+++++.. . +++.++...
T Consensus 175 ~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~---e----------------------------------m~~ra~~~~ 217 (366)
T cd08148 175 RDRITEVAAALDRVQEETGEKKLYAVNVTAGTF---E----------------------------------IIERAERAL 217 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEccCCHH---H----------------------------------HHHHHHHHH
Confidence 357778889999999998876555556665521 1 112334456
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC----------cc-h-HHHH-HhcCCCE
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS----------GG-L-LERL-ALTGVDV 303 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~----------~~-~-l~~l-~e~g~d~ 303 (386)
++|++.+++.--..++ + .++.+.+... . +.++..|-.+. .. . +-.| .=.|+|.
T Consensus 218 ~~G~~~~mv~~~~~G~-~----------~l~~l~~~~~-~--~l~IhaHrA~~ga~~~~~~~G~~~~~l~kl~RLaGaD~ 283 (366)
T cd08148 218 ELGANMLMVDVLTAGF-S----------ALQALAEDFE-I--DLPIHVHRAMHGAVTRSKFHGISMLVLAKLLRMAGGDF 283 (366)
T ss_pred HhCCCEEEEeccccch-H----------HHHHHHHhCc-C--CcEEEeccccccccccCCCCCcCHHHHHHHHHHcCCCc
Confidence 7899987764333332 2 1222222211 1 45666665442 11 1 3333 3458888
Q ss_pred EEcCCC-----CCHH---HHHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCCC
Q 016596 304 VSLDWT-----VDMA---EGRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVGT 369 (386)
Q Consensus 304 l~~d~~-----~dl~---e~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~t 369 (386)
+++... .+-+ .+.+.+-.. +|++.+..- . -++. .+.++++..| .-+|+..|-++ -|+-
T Consensus 284 ~~~~t~~Gk~~~~~~~~~~~~~~~~~~---~~~~k~~~Pv~sgG~~~~----~vp~~~~~~G-~Dvil~~GGgi~gHp~G 355 (366)
T cd08148 284 IHTGTVVGKMALEREEALGIADALTDD---WAGFKRVFPVASGGIHPG----LVPGILRDFG-IDVILQAGGGIHGHPDG 355 (366)
T ss_pred cccCCcccCcCCCHHHHHHHHHHHhCc---ccCCCCceEeccCCCChh----HHHHHHHHhC-CcEEEEcCccccCCCCC
Confidence 876432 2222 233333221 566665542 1 2233 3345566666 34888888887 4677
Q ss_pred cHHHHHHHHHH
Q 016596 370 PEENVAHFFEV 380 (386)
Q Consensus 370 p~Eni~a~~~a 380 (386)
+.+..+|+.+|
T Consensus 356 ~~aGa~A~rqA 366 (366)
T cd08148 356 TVAGARAMRQA 366 (366)
T ss_pred hHHHHHHhhcC
Confidence 88888888764
No 312
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.03 E-value=31 Score=32.83 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDW 308 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~ 308 (386)
.++..+++|+|+|++ | -|||++-++. ++.+++.. ..+.+-..|+.+ .+..++++|+|+++...
T Consensus 211 ea~eal~~gaDiI~L-D----nm~~e~vk~a--------v~~~~~~~--~~v~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLL-D----NFPVWQTQEA--------VQRRDARA--PTVLLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEe-C----CCCHHHHHHH--------HHHHhccC--CCEEEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 444556789999885 4 3667776554 44444332 235678889887 48999999999998753
No 313
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=63.99 E-value=2.8e+02 Score=32.10 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ec----CCc---ch
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-AS----GSG---GL 292 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~c----G~~---~~ 292 (386)
.+.+.+...+.++.+++.|+|.+.+ ++. .+...-+-. .--.++.++ +.+.+.|+++. +| |.. .-
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllli-ETi---~d~~EakAa-l~a~~~~~~---~~~~~lPv~vS~T~~d~~Gr~lsG~~ 230 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILI-ETI---FDTLNAKAA-IFAVEEVFE---ELGVRLPVMISGTITDASGRTLSGQT 230 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-eee---CCHHHHHHH-HHHHHHHHh---hcCCCCeEEEEEEEECCCCccCCCCc
Confidence 3556777778888899999998764 443 333222211 111122221 12224676653 23 222 11
Q ss_pred HH----HHHhcCCCEEEcCCCCC---HHHHH----HHhCCCeeEEec--CCcC-cc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 293 LE----RLALTGVDVVSLDWTVD---MAEGR----RRLGPDVAVQGN--VDPG-AL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 293 l~----~l~e~g~d~l~~d~~~d---l~e~~----~~~g~~~~l~G~--vd~~-~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
++ .+...+++++.+.=... +..+- +....-+.+.-| ++.. .. ..||++..+.+++.++.++ -=
T Consensus 231 ~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~--v~ 308 (1229)
T PRK09490 231 TEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGF--LN 308 (1229)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CC
Confidence 33 33457888776542222 22222 222222333222 2221 13 5799999999999988542 23
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
|++ ||. +|.||.|+++.++++.+
T Consensus 309 IIG-GCC---GTtPeHI~ala~~l~~~ 331 (1229)
T PRK09490 309 IVG-GCC---GTTPEHIAAIAEAVAGL 331 (1229)
T ss_pred EEE-ecC---CCCHHHHHHHHHHHhcC
Confidence 555 454 67899999999998754
No 314
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=63.63 E-value=1.3e+02 Score=28.15 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHHHh----hHHHHHHHHHHHHhhCCCCcEEEEecCCc-----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFEEF----SLPYLKQIVDTVKQTHPDLSLILYASGSG----- 290 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~ef----~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----- 290 (386)
+...+.++++.+.|+|.|=++ ||.+. .|-...-+-+ -....-+++..+++. ..+|+++...-|.
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 344556677889999987765 55543 2222211111 011233344455543 2568777777663
Q ss_pred --chHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcCCCCeEEecC-CCC
Q 016596 291 --GLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAGRWKHILNLG-HGI 365 (386)
Q Consensus 291 --~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~~~g~Ils~g-c~i 365 (386)
.++..+++.|+|.+-+... .+++..+.+. .+--=|+++..| -.|+++ .++++.+.. .|||.--+ -++
T Consensus 108 ~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~--~~~~~gi~~I~lv~PtT~~e---ri~~i~~~a--~gFIY~vS~~Gv 179 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDL-PYEESDYLIS--VCNLYNIELILLIAPTSSKS---RIQKIARAA--PGCIYLVSTTGV 179 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCC-CHHHHHHHHH--HHHHcCCCEEEEECCCCCHH---HHHHHHHhC--CCcEEEEcCCCC
Confidence 1367778899998865321 2233322221 011124666654 355543 333343433 35665421 222
Q ss_pred C--CCCcHHHHHHHHHHHHhh
Q 016596 366 K--VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 366 ~--~~tp~Eni~a~~~a~~~y 384 (386)
. ...-+++++.+++.+|++
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred CCCCccccHHHHHHHHHHHHh
Confidence 1 123357788888888874
No 315
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=63.54 E-value=67 Score=28.79 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEe--cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE----ecCCcc-hHHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIF--DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY----ASGSGG-LLERLA 297 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~--d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H----~cG~~~-~l~~l~ 297 (386)
.+.+.+-++.+.+.|+|++.++ ++-+. .=.+..+++++.++ +.++.+| ..-+.. -++.+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~---------iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~ 137 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTEDGE---------IDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLI 137 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETTSS---------B-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCCCC---------cCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHH
Q ss_pred hcCCCEEEcCCC--------CCHHHHHHHhCCCeeEEec
Q 016596 298 LTGVDVVSLDWT--------VDMAEGRRRLGPDVAVQGN 328 (386)
Q Consensus 298 e~g~d~l~~d~~--------~dl~e~~~~~g~~~~l~G~ 328 (386)
++|++-+--... ..++++.+..++++.|+-|
T Consensus 138 ~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~G 176 (201)
T PF03932_consen 138 ELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPG 176 (201)
T ss_dssp HHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred hcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEec
No 316
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=62.91 E-value=95 Score=29.70 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCEEEEec--CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHH
Q 016596 221 LRKFTTSMAKYVQYQAD-NGAQAVQIFD--SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e-~G~d~i~i~d--~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~ 294 (386)
.+.+++.+++-++.-++ .+...-+|.. .+.+ |+| .....++-...+-++. +.|+..|+-+-+. .++
T Consensus 112 i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~-iTp-----~Eek~lrAaA~A~~~T--g~Pi~tHt~~gt~g~eq~~ 183 (316)
T COG1735 112 IEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPA-ITP-----LEEKSLRAAARAHKET--GAPISTHTPAGTMGLEQLR 183 (316)
T ss_pred HHHHHHHHHHHHHhcccCCccccceeeeccCccc-CCH-----HHHHHHHHHHHHhhhc--CCCeEEeccchhhhHHHHH
Confidence 46666666655543321 1222222222 2222 555 3334445555555554 6899999987664 378
Q ss_pred HHHhcCCC----EE-EcCCCC-CHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 295 RLALTGVD----VV-SLDWTV-DMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 295 ~l~e~g~d----~l-~~d~~~-dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
.+.+.|+| ++ +.|... |+.-.++ +-++-++++ +|...+ +-+.++...-+.++++.+-.....||
T Consensus 184 il~~egvdl~~v~igH~d~n~dd~~y~~~-l~~~Ga~l~-fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls 255 (316)
T COG1735 184 ILAEEGVDLRKVSIGHMDPNTDDVYYQKK-LADRGAFLE-FDRIGKDKYYPDEDRIAPLLELVARGYADLILLS 255 (316)
T ss_pred HHHHcCCChhHeeEeccCCCCChHHHHHH-HHhcCceEE-ecccCccccCcHHHhhhhHHHHHHhhHhhheecc
Confidence 88898987 22 556444 4444333 333324443 676554 56666666666666666434455666
No 317
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=62.71 E-value=1.7e+02 Score=29.27 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e 237 (386)
+|+..+.+++++..++.|..+-...+++++.. .+ .+.++...+
T Consensus 188 ~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~---em----------------------------------~~ra~~a~~ 230 (407)
T TIGR03332 188 KRITEGKEVLQEVYEQTGHKTLYAVNLTGRTF---DL----------------------------------KDKAKRAAE 230 (407)
T ss_pred HHHHHHHHHHHHHHHHHCCcceEeecCCCCHH---HH----------------------------------HHHHHHHHH
Confidence 56778889999999998876655556666522 11 123344567
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----------c--hHHHH-HhcCCCE
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-----------G--LLERL-ALTGVDV 303 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-----------~--~l~~l-~e~g~d~ 303 (386)
.|++.+++.-.+.++=. ++.+.+. .+. +.|+..|-.+.- . .+-.| .=.|+|.
T Consensus 231 ~G~~~~mv~~~~~G~~~-----------~~~l~~~-~~~--~lpihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~ 296 (407)
T TIGR03332 231 LGADVLLFNVFAYGLDV-----------LQSLAED-DEI--PVPIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADF 296 (407)
T ss_pred hCCCEEEEeccccChHH-----------HHHHHhc-CCC--CcEEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCc
Confidence 89998886443433211 2222221 111 456666654421 1 12222 2348887
Q ss_pred EEcCCC-----CCHHH---HHHHhCCCeeEEecCCcCcc--CC--CHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCCC
Q 016596 304 VSLDWT-----VDMAE---GRRRLGPDVAVQGNVDPGAL--FG--SKDFITNRINDTVRKAGRWKHILNLGHGI--KVGT 369 (386)
Q Consensus 304 l~~d~~-----~dl~e---~~~~~g~~~~l~G~vd~~~l--~g--t~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~t 369 (386)
+++... .+-++ +.+.+-.. +|++.+.+- .| ++. .+.++++..| .-+|+..|-++ -|+-
T Consensus 297 ~~~~~~~Gk~~~~~~~~~~~~~~~~~p---~~~~k~~~Pv~sGG~~~~----~~p~~~~~~G-~Dvil~~GGGi~gHP~G 368 (407)
T TIGR03332 297 SLFPSPYGSVALEREDALAISKELTED---DAPFKKTFAVPSAGIHPG----MVPLIMRDFG-IDHIINAGGGIHGHPNG 368 (407)
T ss_pred cccCCcccCCCCCHHHHHHHHHHHhcc---ccCCCccEEecCCCcChh----HHHHHHHHhC-CceEEecCcccccCCCC
Confidence 765322 23222 22222221 345555441 11 222 3445566666 34788888887 4677
Q ss_pred cHHHHHHHHHHHHh
Q 016596 370 PEENVAHFFEVAKA 383 (386)
Q Consensus 370 p~Eni~a~~~a~~~ 383 (386)
+.+..+|+.+++..
T Consensus 369 ~~aGa~A~rqA~ea 382 (407)
T TIGR03332 369 AQGGGRAFRAAIDA 382 (407)
T ss_pred chhhHHHHHHHHHH
Confidence 88899999887654
No 318
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=62.68 E-value=48 Score=30.47 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHH
Q 016596 264 PYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITN 343 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~ 343 (386)
..++++++.+++. |+.+.+++..+...++.-+++|++.+.+... ....+ + +.++..+
T Consensus 110 ~~l~~~i~~l~~~--gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG-~YA~a---~-----------------~~~~~~~ 166 (237)
T TIGR00559 110 DKLCELVKRFHAA--GIEVSLFIDADKDQISAAAEVGADRIEIHTG-PYANA---Y-----------------NKKEMAE 166 (237)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCcCEEEEech-hhhcC---C-----------------CchhHHH
Confidence 3456667777876 6899999999988889889999999877532 11110 0 0122233
Q ss_pred HHHHHHHHc---CCCCeEEecCCCCCCCCcHHHHHHHH
Q 016596 344 RINDTVRKA---GRWKHILNLGHGIKVGTPEENVAHFF 378 (386)
Q Consensus 344 ~v~~~i~~~---~~~g~Ils~gc~i~~~tp~Eni~a~~ 378 (386)
+..++.+.. ..-|.-++.||++ ..+|+..+.
T Consensus 167 el~~i~~aa~~A~~lGL~VnAGHgL----ny~Nv~~i~ 200 (237)
T TIGR00559 167 ELQRIVKASVHAHSLGLKVNAGHGL----NYHNVKYFA 200 (237)
T ss_pred HHHHHHHHHHHHHHcCCEEecCCCC----CHHhHHHHH
Confidence 333333332 2568999999998 456666554
No 319
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=62.58 E-value=83 Score=31.52 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSW 249 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~ 249 (386)
+--++.++++-+.|++.|=.+.+.
T Consensus 24 e~Ki~Ia~~Ld~lGv~~IE~g~p~ 47 (409)
T COG0119 24 EEKIRIAKALDDLGVDYIEAGFPV 47 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCc
Confidence 344566677778899988765555
No 320
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=62.44 E-value=1.3e+02 Score=27.76 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCEEEEecC-CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcC-CC
Q 016596 228 MAKYVQYQADNGAQAVQIFDS-WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTG-VD 302 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~-~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g-~d 302 (386)
..++++.+.+.|++.|.+.+- ..+.. ..+-+++++++.+.. +.|++ ..|... .+..+.+.| ++
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~-----~g~~~~~~~~i~~~~-----~ipvi--a~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTK-----SGYDLELTKAVSEAV-----KIPVI--ASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCC-----CCCCHHHHHHHHHhC-----CCCEE--EeCCCCCHHHHHHHHHcCCcc
Confidence 356667777888888777541 11111 112344455554443 34532 334332 355555555 77
Q ss_pred EEEc-----CCCCCHHHHHHHhC
Q 016596 303 VVSL-----DWTVDMAEGRRRLG 320 (386)
Q Consensus 303 ~l~~-----d~~~dl~e~~~~~g 320 (386)
++.+ ....++.++++.+.
T Consensus 225 gv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 225 AALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred eeeEhHHHhCCCCCHHHHHHHHH
Confidence 6543 23467777766553
No 321
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=62.43 E-value=1.6e+02 Score=28.73 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec------------CCcc--hHHHH
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS------------GSGG--LLERL 296 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c------------G~~~--~l~~l 296 (386)
.++...+.|+..+.+... ..|+ +-..++.++++.+++..++ +-+|.+ |... .+..|
T Consensus 87 ~a~~~~~~G~~~v~l~~G----~~p~----~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~L 156 (351)
T TIGR03700 87 RVKEAYAPGATEVHIVGG----LHPN----LPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDEL 156 (351)
T ss_pred HHHHHHHCCCcEEEEecC----CCCC----CCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344456689988887522 1221 1135788889999987432 334432 3322 36778
Q ss_pred HhcCCCEEE
Q 016596 297 ALTGVDVVS 305 (386)
Q Consensus 297 ~e~g~d~l~ 305 (386)
++.|++.+.
T Consensus 157 keAGld~~~ 165 (351)
T TIGR03700 157 KEAGLDSMP 165 (351)
T ss_pred HHcCCCcCC
Confidence 888988664
No 322
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=62.22 E-value=1.4e+02 Score=28.21 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCEEEE-ecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQI-FDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i-~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~ 306 (386)
..+++..+..+.+|.= +.....+++- ..+..+++..+.+.. ++|+.+|.+ |... ....-.+.|+..+.+
T Consensus 33 AileaA~e~~sPvIiq~S~g~~~y~gg-------~~~~~~~v~~~a~~~-~vPV~lHlDHg~~~~~~~~ai~~GFsSvMi 104 (286)
T COG0191 33 AILEAAEEEKSPVIIQFSEGAAKYAGG-------ADSLAHMVKALAEKY-GVPVALHLDHGASFEDCKQAIRAGFSSVMI 104 (286)
T ss_pred HHHHHHHHhCCCEEEEecccHHHHhch-------HHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHhcCCceEEe
Confidence 3344455667776642 2222234442 233334444333333 589999986 4432 456667789888877
Q ss_pred CCC-----CCHHHHHHHhC----CCeeE------EecCCcCc-------cCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-----VDMAEGRRRLG----PDVAV------QGNVDPGA-------LFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-----~dl~e~~~~~g----~~~~l------~G~vd~~~-------l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. -+++..|+.+. -.+++ .||..... ++..|+|..+.|++. ++.++ .-+++.|
T Consensus 105 DgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA---~aiGn~H 181 (286)
T COG0191 105 DGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALA---AAIGNVH 181 (286)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceee---eeccccc
Confidence 743 24443333321 11232 34433211 135577777777765 55542 2255667
Q ss_pred CCCC----CCcHHHHHHHHH
Q 016596 364 GIKV----GTPEENVAHFFE 379 (386)
Q Consensus 364 ~i~~----~tp~Eni~a~~~ 379 (386)
|+-+ .-.++.++..-+
T Consensus 182 G~Yk~~~p~L~~~~L~~i~~ 201 (286)
T COG0191 182 GVYKPGNPKLDFDRLKEIQE 201 (286)
T ss_pred cCCCCCCCCCCHHHHHHHHH
Confidence 7643 233454444433
No 323
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=62.21 E-value=51 Score=29.85 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--hHHHHHhcCCCE
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--LLERLALTGVDV 303 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~l~~l~e~g~d~ 303 (386)
.+.++++.+.+.|+|+|.+.+.. ++..+++.+++.+++.-..-+. + -+..+.+.|+..
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~~g-------------------~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~ 63 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSNPG-------------------LLELLKELGPDLKIIADYSLNVFNSESARFLKELGASR 63 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcCHH-------------------HHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCE
Confidence 45567778889999999876543 2455566544555544433333 3 378899999999
Q ss_pred EEcCCCCCHHHHHHHhCC------CeeEEecCC
Q 016596 304 VSLDWTVDMAEGRRRLGP------DVAVQGNVD 330 (386)
Q Consensus 304 l~~d~~~dl~e~~~~~g~------~~~l~G~vd 330 (386)
+.+....++.++++.... .+.+.|+++
T Consensus 64 i~ls~EL~~~ei~~i~~~~~~~~~Ev~v~G~~~ 96 (233)
T PF01136_consen 64 ITLSPELSLEEIKEIAENSPGVPLEVIVHGNLP 96 (233)
T ss_pred EEECccCCHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 888877777777665422 245677664
No 324
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=61.75 E-value=75 Score=27.64 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC-CCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCH-HHHHHH
Q 016596 268 QIVDTVKQTHPDLSLILYASGSGG-LLERLALTG-VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSK-DFITNR 344 (386)
Q Consensus 268 ~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g-~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~-eev~~~ 344 (386)
++++.+++. |..+.+.+.|... .++.+++.| ++.++++-..+-+...+..|.+ ++. +++.+.
T Consensus 81 ~li~~~~~~--g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~-------------~~~~~~~~~~ 145 (191)
T TIGR02495 81 DFLRKVREL--GFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLE-------------KNGSNNILKS 145 (191)
T ss_pred HHHHHHHHC--CCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCC-------------CchHHHHHHH
Confidence 445555555 4567888888754 578888888 5766554333322233333321 111 456655
Q ss_pred HHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 345 INDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 345 v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++.+.+ .+ -.+.+.+ .-++...+.+.+..+.+..++.|
T Consensus 146 i~~l~~-~g-i~~~i~~-~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 146 LEILLR-SG-IPFELRT-TVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHH-cC-CCEEEEE-EEeCCCCCHHHHHHHHHHhccCC
Confidence 544433 32 1222221 11233445667888888877654
No 325
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.73 E-value=1.5e+02 Score=28.13 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-cCCc-c--hHHHHHh-cCCCEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-SGSG-G--LLERLAL-TGVDVV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-cG~~-~--~l~~l~e-~g~d~l 304 (386)
+.++...++|+|++.+.-|+-...|+ +=+.-|++++.++. +.|++++. .|.. . .+..+.+ .+ +++
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~----~~i~~~f~~v~~a~-----~~pvilYn~~g~~l~~~~~~~La~~~~-nvv 159 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQ----EGLYAHVEAVCEST-----DLGVIVYQRDNAVLNADTLERLADRCP-NLV 159 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHhcc-----CCCEEEEeCCCCCCCHHHHHHHHhhCC-CEE
Confidence 34556778899999886666433453 34555888888865 34655543 4532 2 2455554 44 455
Q ss_pred Ec-CCCCCHHH---HHHHhCCCeeEEecC
Q 016596 305 SL-DWTVDMAE---GRRRLGPDVAVQGNV 329 (386)
Q Consensus 305 ~~-d~~~dl~e---~~~~~g~~~~l~G~v 329 (386)
.+ +...|+.. +.+..+++..++.|.
T Consensus 160 giKds~~d~~~~~~~~~~~~~~~~v~~G~ 188 (296)
T TIGR03249 160 GFKDGIGDMEQMIEITQRLGDRLGYLGGM 188 (296)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEEeCC
Confidence 44 33445544 445556666666554
No 326
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.57 E-value=36 Score=32.33 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|+|++ | -+||++.++.+ +.+++..+ .+.+-..|.++ .+..++++|+|.+++.
T Consensus 207 eea~eA~~~GaD~I~L-D----n~~~e~l~~av--------~~~~~~~~--~i~leAsGGIt~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 207 EQVQEALEYGADIIML-D----NMPVDLMQQAV--------QLIRQQNP--RVKIEASGNITLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHHcCCCEEEE-C----CCCHHHHHHHH--------HHHHhcCC--CeEEEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 3444556789999875 4 36777666544 33443222 34567778776 4899999999999875
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 272 s 272 (288)
T PRK07428 272 A 272 (288)
T ss_pred h
Confidence 3
No 327
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=61.51 E-value=1.4e+02 Score=27.90 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC-Ccch--H----HHHHhcCCCE
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG-SGGL--L----ERLALTGVDV 303 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG-~~~~--l----~~l~e~g~d~ 303 (386)
-++.+.+.|+|+|.+.+..++-... .-.++...+++.. |.+++.|.+. +.+. + ..+.+.|+.-
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~---------~t~~~a~~l~~~~-g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~n 89 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRD---------RTVRIVRRIKKET-GIPTVPHLTCIGATREEIREILREYRELGIRH 89 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHH---------HHHHHHHHHHHhc-CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCE
Confidence 4445667899999998754432211 2345666666433 5788999754 3321 3 3446678873
Q ss_pred EE-c--CCC--------------CCH-HHHHHHhCCCeeEEecCCcCc-c-CCCHHHHHHHHHHHHHHcCCCCeEEecCC
Q 016596 304 VS-L--DWT--------------VDM-AEGRRRLGPDVAVQGNVDPGA-L-FGSKDFITNRINDTVRKAGRWKHILNLGH 363 (386)
Q Consensus 304 l~-~--d~~--------------~dl-~e~~~~~g~~~~l~G~vd~~~-l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc 363 (386)
+- + |.. .++ +-+++..+ ++.+.+...|.. . ..+.++-.+..++-++. |-.|+++
T Consensus 90 vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~-~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~a--GA~f~iT--- 163 (272)
T TIGR00676 90 ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG-DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDA--GADYAIT--- 163 (272)
T ss_pred EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHc--CCCeEee---
Confidence 32 2 111 122 23333334 577777777753 3 23443333333333333 3347775
Q ss_pred CCCCCCcHHHHHHHHHHHHhhc
Q 016596 364 GIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 364 ~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++--..+.+..+++.+++-|
T Consensus 164 --Q~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 164 --QLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred --ccccCHHHHHHHHHHHHHcC
Confidence 33345677777777766543
No 328
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=61.47 E-value=1.7e+02 Score=29.43 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e 237 (386)
+|+..+.+++++..++.|..+-...+++++.+ .+ .+.++...+
T Consensus 180 ~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~---em----------------------------------~~ra~~a~e 222 (412)
T cd08213 180 ERAKESLKARDKAEAETGERKAYLANITAPVR---EM----------------------------------ERRAELVAD 222 (412)
T ss_pred HHHHHHHHHHHHHHHhhCCcceEEEEecCCHH---HH----------------------------------HHHHHHHHH
Confidence 56778888999999998876655566666522 11 122334567
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc----------c-h-HHHH-HhcCCCEE
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG----------G-L-LERL-ALTGVDVV 304 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----------~-~-l~~l-~e~g~d~l 304 (386)
.|++.+++.--..+ +| -+..+.+...+. +.++..|-.+.- . . +-.| .=.|+|.+
T Consensus 223 ~G~~~~mv~~~~~G-~~----------~l~~l~~~~~~~--~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD~i 289 (412)
T cd08213 223 LGGKYVMIDVVVAG-WS----------ALQYLRDLAEDY--GLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVDQL 289 (412)
T ss_pred hCCCeEEeeccccC-hH----------HHHHHHHhcccc--CeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCCcc
Confidence 79998776333333 22 222333322222 456666654421 1 1 2222 23588888
Q ss_pred EcCCC-----CCHH---HHHHHhCCCe-----------eEEecCCcCcc--CC--CHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 305 SLDWT-----VDMA---EGRRRLGPDV-----------AVQGNVDPGAL--FG--SKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 305 ~~d~~-----~dl~---e~~~~~g~~~-----------~l~G~vd~~~l--~g--t~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
++... .+-+ .+.+.+.... --+|++.+..- .| ++. .+.++++.+| .-+|+..
T Consensus 290 h~~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~----~~p~~~~~~G-~Dvil~~ 364 (412)
T cd08213 290 HIGTAVGKMEGDKEEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPVASGGLHPG----LVPDVIDILG-KDIVIQV 364 (412)
T ss_pred ccCCccCCcCCCHHHHHHHHHHHHhccccccchhccccCccccCCCceEecCCCCChh----HHHHHHHHhC-CceEEec
Confidence 76432 1222 2222222110 01456655542 11 233 3456666776 3488888
Q ss_pred CCCC--CCCCcHHHHHHHHHHHHh
Q 016596 362 GHGI--KVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 362 gc~i--~~~tp~Eni~a~~~a~~~ 383 (386)
|-++ -|+-+.+..+|+.+++..
T Consensus 365 GGGi~gHP~G~~aGa~A~rqA~ea 388 (412)
T cd08213 365 GGGVHGHPDGTRAGAKAVRQAIEA 388 (412)
T ss_pred CCceecCCCCchhHHHHHHHHHHH
Confidence 8887 467788888888887653
No 329
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=61.28 E-value=1.5e+02 Score=28.02 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhC-----CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcchHHHHH
Q 016596 224 FTTSMAKYVQYQADNG-----AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGLLERLA 297 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G-----~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~l~~l~ 297 (386)
-++.-+++++.+.++| .+.|-+ ++ +++..+++ .+++++ .+. ...+..|.-.+..-++...
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~----~s-~~~~d~~~-----v~~~~~----~~~~~~~v~~~~r~~~~die~A~ 84 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEF----FL-YTEKDREA-----VEACLD----RGYKFPEVTGWIRANKEDLKLVK 84 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEe----cC-cChHHHHH-----HHHHHH----cCCCCCEEEEEecCCHHHHHHHH
Confidence 3555667888899999 887764 22 35545442 222222 110 1134556444544578888
Q ss_pred hcCCCEEEcCCC-----------CCHHHHHHHhC--------CCeeEEecCCcCcc-CCCH-HHHHHHHHHHHHHcC-CC
Q 016596 298 LTGVDVVSLDWT-----------VDMAEGRRRLG--------PDVAVQGNVDPGAL-FGSK-DFITNRINDTVRKAG-RW 355 (386)
Q Consensus 298 e~g~d~l~~d~~-----------~dl~e~~~~~g--------~~~~l~G~vd~~~l-~gt~-eev~~~v~~~i~~~~-~~ 355 (386)
++|++.+++.-. .+.+++.+++. ..+.+...+ ..- ..+. +.+.+.++++++.+. -|
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~~~~~~~~~~G 162 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVNKLMKLSKESG 162 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHHHHHHHHHHCC
Confidence 999987764211 23343333221 011222222 111 1222 445566666666543 12
Q ss_pred C-eEEecCCCCCCCCc------HHHHHHHHHHHHh
Q 016596 356 K-HILNLGHGIKVGTP------EENVAHFFEVAKA 383 (386)
Q Consensus 356 g-~Ils~gc~i~~~tp------~Eni~a~~~a~~~ 383 (386)
- .+++....+-..+| |+.+..+++++++
T Consensus 163 ~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~ 197 (279)
T cd07947 163 IPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRK 197 (279)
T ss_pred CCEEEEeccCCCcCCccccccchHHHHHHHHHHHH
Confidence 2 24555555544555 5788899988875
No 330
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.50 E-value=2.1e+02 Score=29.43 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=34.2
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCC-c--c--hHHHHHhcCCCEEEc
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGS-G--G--LLERLALTGVDVVSL 306 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~-~--~--~l~~l~e~g~d~l~~ 306 (386)
+.|+..+++.|+..+ ++++. .+++++.+.+.+ -++.....+..+ . . .++.+.+.|+..+++
T Consensus 237 ~~gv~~~~~~Dd~f~-~~~~~--------~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~i 303 (497)
T TIGR02026 237 THGVGFFILADEEPT-INRKK--------FQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISL 303 (497)
T ss_pred HcCCCEEEEEecccc-cCHHH--------HHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEE
Confidence 458888888776532 44433 456677766652 112222222222 1 2 468888899887765
No 331
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.24 E-value=98 Score=25.62 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE-EcC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV-SLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l-~~d 307 (386)
++++..+.++|.|.++...+ -..+..+++++.+++.+.+ .+.+...|+.. ..+.+.++|++.+ +..
T Consensus 45 ~v~aa~e~~adii~iSsl~~----------~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAG----------GHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HHHHHHHcCCCEEEEcCchh----------hhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCCCEEECCC
Confidence 55566788999988743221 2334567788888886432 23455566654 3788999999865 443
Q ss_pred CCCCHHHHHHH
Q 016596 308 WTVDMAEGRRR 318 (386)
Q Consensus 308 ~~~dl~e~~~~ 318 (386)
.++.+..+.
T Consensus 114 --t~~~~i~~~ 122 (132)
T TIGR00640 114 --TPIPESAIF 122 (132)
T ss_pred --CCHHHHHHH
Confidence 355544443
No 332
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=60.24 E-value=1.5e+02 Score=27.64 Aligned_cols=108 Identities=14% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCEEEEec-CCcCCCCHHH----HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH-HHHHhcC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD-SWATELSPVD----FEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTG 300 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d-~~~~~iSp~~----f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l-~~l~e~g 300 (386)
.+.+.++.+.+.|+..+.+.. +..++=.|+. --+++.-++.++++.+++. .+-++..|+...| +.+.+.
T Consensus 54 ~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~----~iri~viG~~~~Lp~~~~~~- 128 (251)
T PRK14830 54 TVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIEN----NVKVNVIGDTDRLPEHTLRA- 128 (251)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEEEEcChhhCCHHHHHH-
Confidence 344455556778999877654 2222222222 1133455666777777764 3578999998754 445443
Q ss_pred CCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 301 VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
+.++.+...+.--+.=|| .+ +|+.+||.+.++++++...
T Consensus 129 -----------~~~~e~~T~~~~~~~Lni---a~~YggR~EI~~A~~~~~~~v~ 168 (251)
T PRK14830 129 -----------LEKAIEKTKNNTGLILNF---ALNYGGRAEIVSAVKEIAKDVL 168 (251)
T ss_pred -----------HHHHHHHccCCCceEEEE---EecCCCHHHHHHHHHHHHHHHH
Confidence 333333332211110011 13 6888888888888887654
No 333
>PRK10508 hypothetical protein; Provisional
Probab=60.22 E-value=12 Score=36.35 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.||||+|.+++.++.+..+-..+++.+.+ .+.+.-.++++.+.++.++
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del~~~~~~-~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEIMVNGQI-FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEEEEECCC-CCHHHHHHHHHHHHHHhhh
Confidence 69999999999999999984577766655 5667777788877777765
No 334
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=60.18 E-value=1.6e+02 Score=27.90 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. .+.+ -+++.++.+.+.+.. .+|+.+|.+-... .+..-++.|++.+.+
T Consensus 28 avi~AAe~~~sPvIi~~~~~~~~~~~----~~~~~~~~~~~a~~~-----~VPV~lHLDH~~~~~~i~~ai~~GftSVMi 98 (276)
T cd00947 28 AILEAAEETRSPVILQISEGAIKYAG----LELLVAMVKAAAERA-----SVPVALHLDHGSSFELIKRAIRAGFSSVMI 98 (276)
T ss_pred HHHHHHHHhCCCEEEEcCcchhhhCC----HHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHhCCCEEEe
Confidence 344455566777765333222 2333 234555555554443 5799999864433 456667899999988
Q ss_pred CCC-C----CHHHHHH------HhCCCeeE---EecCC----c----CccCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-V----DMAEGRR------RLGPDVAV---QGNVD----P----GALFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-~----dl~e~~~------~~g~~~~l---~G~vd----~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. . +++..++ ..| +.+ .|.|. . ..++-+||++.+.+++. ++.+ -.=+++.|
T Consensus 99 D~S~l~~eeNi~~t~~vv~~ah~~g--v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L---AvsiGt~H 173 (276)
T cd00947 99 DGSHLPFEENVAKTKEVVELAHAYG--VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL---AVAIGTSH 173 (276)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE---EeccCccc
Confidence 754 2 3333332 232 333 23231 1 01357899999988874 2222 11133345
Q ss_pred CCC----CCCcHHHHHHHHHHH
Q 016596 364 GIK----VGTPEENVAHFFEVA 381 (386)
Q Consensus 364 ~i~----~~tp~Eni~a~~~a~ 381 (386)
++- |...+|.++.+-+++
T Consensus 174 G~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 174 GAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred cccCCCCCccCHHHHHHHHHHh
Confidence 543 345566555555443
No 335
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=59.68 E-value=67 Score=29.93 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
.+.++.+.++|++.+.+.|- + .| ..+++..+.+.. +.| +-..|..+ .++.+.+.|++-+.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-g------------~~-n~~~i~~i~~~~-~~~--v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-G------------PN-NDDAAKEALHAY-PGG--LQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-C------------CC-cHHHHHHHHHhC-CCC--EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 45677788999999998876 1 12 223333333321 334 44556554 478888999998766
Q ss_pred CC---------CCCHHHHHHHhCCCeeEEecCCcC-------cc--CCCHH----HHH-HHHHHHHHHcCCCCeEEecC-
Q 016596 307 DW---------TVDMAEGRRRLGPDVAVQGNVDPG-------AL--FGSKD----FIT-NRINDTVRKAGRWKHILNLG- 362 (386)
Q Consensus 307 d~---------~~dl~e~~~~~g~~~~l~G~vd~~-------~l--~gt~e----ev~-~~v~~~i~~~~~~g~Ils~g- 362 (386)
.. .-.++++.++||.. .+.-.||.. .+ .|-.+ +.. +.++++-+ . -+.+|++.=
T Consensus 104 GS~av~~~~i~~~~~~~i~~~fG~~-~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~-~-~~~il~TdI~ 180 (253)
T TIGR02129 104 TSWLFTKGKFDLKRLKEIVSLVGKD-RLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK-Y-CDEFLIHAAD 180 (253)
T ss_pred CcHHHhCCCCCHHHHHHHHHHhCCC-CEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh-h-CCEEEEeeec
Confidence 43 12578899999744 222335532 11 33222 233 33333322 2 234444431
Q ss_pred -CCCCCCCcHHHHHHHHHHH
Q 016596 363 -HGIKVGTPEENVAHFFEVA 381 (386)
Q Consensus 363 -c~i~~~tp~Eni~a~~~a~ 381 (386)
.++..+...|-++.+.+.+
T Consensus 181 rDGtl~G~dlel~~~l~~~~ 200 (253)
T TIGR02129 181 VEGLCKGIDEELVSKLGEWS 200 (253)
T ss_pred ccCccccCCHHHHHHHHhhC
Confidence 3456777888887776653
No 336
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=59.59 E-value=91 Score=32.47 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h-------------HHH
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L-------------LER 295 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~-------------l~~ 295 (386)
+.++.+.+.|||-+.+.|-.++.-++.. ++-.....+++.+.+ .+| +-..|.+. . +..
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~-~~~~~~~i~~i~~~~-----~ip--~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLG-DLPMLEVLRRASENV-----FVP--LTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCccc-chhHHHHHHHHHhhC-----CCC--EEEcCCccccccccccccchHHHHHH
Confidence 4667777899999999886654323221 111233334444433 234 45566654 3 467
Q ss_pred HHhcCCCEEEcCCC-----------------CCHHHHHHHhCCCeeEEecCCc
Q 016596 296 LALTGVDVVSLDWT-----------------VDMAEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 296 l~e~g~d~l~~d~~-----------------~dl~e~~~~~g~~~~l~G~vd~ 331 (386)
+.+.|+|-+++... .=++++.++||++ ++.-.||+
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q-~ivvsiD~ 394 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ-AVVVSIDP 394 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCc-eEEEEEec
Confidence 77889998877541 1267888899877 44445774
No 337
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=59.49 E-value=2.1e+02 Score=29.35 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
..+.++..++.|++.|++-+.. .+.+.+.+.+ +++.+..++. ++++++|.. ++.-.++|.+.+|+.
T Consensus 309 ~~~~l~~~l~~Gv~~vqlR~k~---~~~~~~~~~a----~~l~~~~~~~--~~~liind~-----~~lA~~~~adGvHl~ 374 (502)
T PLN02898 309 TVDAVRAAIEGGATIVQLREKE---AETREFIEEA----KACLAICRSY--GVPLLINDR-----VDVALACDADGVHLG 374 (502)
T ss_pred HHHHHHHHHHcCCCEEEEccCC---CCHHHHHHHH----HHHHHHHHHh--CCEEEEcCh-----HHHHHhcCCCEEEeC
Confidence 3455777889999999986543 4555554443 4455555654 567666632 566677899999986
Q ss_pred CC-CCHHHHHHHhCCC
Q 016596 308 WT-VDMAEGRRRLGPD 322 (386)
Q Consensus 308 ~~-~dl~e~~~~~g~~ 322 (386)
+. .+..++++.++..
T Consensus 375 ~~d~~~~~~r~~~~~~ 390 (502)
T PLN02898 375 QSDMPVRLARSLLGPG 390 (502)
T ss_pred hHhcCHHHHHHhcCCC
Confidence 53 4567788777644
No 338
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.44 E-value=99 Score=26.73 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecC---CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDS---WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~---~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~ 290 (386)
..+.+.+.++...+.|++.+.+.-. ...-.+.+.-.+.+...++++.+.++++ |+.+.++.++..
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gv~i~lE~~~~~ 136 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY--GVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH--TSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh--cceEEEecccCc
Confidence 3344455555666779998887644 3445666677777888999999999998 578889888754
No 339
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=59.00 E-value=28 Score=35.83 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++++.+++..++|++.|.++|+.+ .+.|..+.+++... .+.+... +.+++-+|++.+... + ..+ .+.|++
T Consensus 147 ~l~~~~~~~~~~Ga~~i~l~DTvG-~~~P~~~~~~i~~l----~~~~~~~-~~v~l~~H~HND~GlAvANalaAv~aGa~ 220 (494)
T TIGR00973 147 FLARIVEAAINAGATTINIPDTVG-YALPAEYGNLIKGL----RENVPNI-DKAILSVHCHNDLGLAVANSLAAVQNGAR 220 (494)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC-CCCHHHHHHHHHHH----HHhhccc-cCceEEEEeCCCCChHHHHHHHHHHhCCC
Confidence 444555567788999999988776 47788877766433 2233221 135788999987652 2 222 367888
Q ss_pred EEEc-----CC---CCCHHHHHHHh
Q 016596 303 VVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~-----d~---~~dl~e~~~~~ 319 (386)
.++. .+ ..+++++.-.+
T Consensus 221 ~vd~tv~GlGERaGNa~le~vv~~L 245 (494)
T TIGR00973 221 QVECTINGIGERAGNAALEEVVMAL 245 (494)
T ss_pred EEEEEeecccccccCccHHHHHHHH
Confidence 7742 22 25676665554
No 340
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.96 E-value=1.3e+02 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCcc------hHHHHHhcCCCEEEc
Q 016596 266 LKQIVDTVKQTHPDLSLILYASGSGG------LLERLALTGVDVVSL 306 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l~e~g~d~l~~ 306 (386)
+++-+..+|+.+.+.-+-+-.||+.+ .+.-|.+.|.|++.+
T Consensus 5 l~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIEL 51 (268)
T KOG4175|consen 5 LSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIEL 51 (268)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEe
Confidence 56667777776555566678899742 257777889999865
No 341
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=58.92 E-value=47 Score=30.65 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC----EEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHH
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD----VVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKD 339 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d----~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~e 339 (386)
.+++.++.++++ +.|+++|+=+... .++.+.+++.. ++++- ..+..++++.+... +.. ++++.....+
T Consensus 112 vF~~ql~lA~~~--~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f-~g~~~~~~~~~~~g-~~~-S~~~~~~~~~-- 184 (255)
T PF01026_consen 112 VFERQLELAKEL--NLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCF-SGSPEEAKKFLDLG-CYF-SFSGAITFKN-- 184 (255)
T ss_dssp HHHHHHHHHHHH--TCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT---S-HHHHHHHHHTT-EEE-EEEGGGGSTT--
T ss_pred HHHHHHHHHHHh--CCcEEEecCCcHHHHHHHHHhccccceeEEEecC-CCCHHHHHHHHhcC-ceE-Eecccccccc--
Confidence 455666777776 6899999999776 58999988732 33332 35777777776332 222 2444433222
Q ss_pred HHHHHHHHHHHHcCCCCeEEecCCCC--C-----CCCcHHHHHHHHHHHHh
Q 016596 340 FITNRINDTVRKAGRWKHILNLGHGI--K-----VGTPEENVAHFFEVAKA 383 (386)
Q Consensus 340 ev~~~v~~~i~~~~~~g~Ils~gc~i--~-----~~tp~Eni~a~~~a~~~ 383 (386)
.++++++++.....++++-++... | ....|.++...++.+.+
T Consensus 185 --~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~ 233 (255)
T PF01026_consen 185 --SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAE 233 (255)
T ss_dssp --SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHH
T ss_pred --cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHH
Confidence 233666777766568999988642 1 13456777766665544
No 342
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=58.82 E-value=53 Score=31.15 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC--CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL--SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i--Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
.+|++||.+.++++ +.|+|.+.++-.. -+.. .| ++-+.-+++|-+.+ ++|.++|
T Consensus 153 ~~yT~peeA~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~~p----~L~~~~L~~I~~~~-----~iPLVLH 209 (285)
T PRK07709 153 VIYADPAECKHLVE--------------ATGIDCLAPALGSVHGPYKGEP----NLGFAEMEQVRDFT-----GVPLVLH 209 (285)
T ss_pred ccCCCHHHHHHHHH--------------HhCCCEEEEeecccccCcCCCC----ccCHHHHHHHHHHH-----CCCEEEe
Confidence 45889987766554 3488977664322 1221 12 23333444544433 5899999
Q ss_pred ecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 286 ASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 286 ~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-.-... .+....++|+.=+|++...- ...+++.+... -...||..+ ....+.+++.+++.++.++
T Consensus 210 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~a~~~~v~~~i~~~g 280 (285)
T PRK07709 210 GGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKD---QEVYDPRKFIGPGRDAIKATVIGKIREFG 280 (285)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 764443 46777889999999875432 23444544321 123666655 5667889999999999886
No 343
>PRK08005 epimerase; Validated
Probab=58.65 E-value=1.4e+02 Score=26.93 Aligned_cols=101 Identities=11% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCc-C-CCCHHHHHHhhH----HH--------HHHHHHHHHhhCCCCcEEEEecCCc--
Q 016596 230 KYVQYQADNGAQAVQIF--D-SWA-T-ELSPVDFEEFSL----PY--------LKQIVDTVKQTHPDLSLILYASGSG-- 290 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~--d-~~~-~-~iSp~~f~ef~~----P~--------~k~l~~~i~~~~~~~~~~~H~cG~~-- 290 (386)
+.++.+.++|+|.+.+- | .+. + -++|+.-+..-. |. =.+.++.+.+.|.+ .+.+|..-..
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad-~It~H~Ea~~~~ 95 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPG-WIFIHAESVQNP 95 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCC-EEEEcccCccCH
Confidence 44556777899988752 2 111 1 356655444321 10 12345555555433 4667766322
Q ss_pred c-hHHHHHhcCCC-EEEcCCCCCHHHHHHHhC--CCeeEEecCCcC
Q 016596 291 G-LLERLALTGVD-VVSLDWTVDMAEGRRRLG--PDVAVQGNVDPG 332 (386)
Q Consensus 291 ~-~l~~l~e~g~d-~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~ 332 (386)
. .+..+++.|.. ++.+...+++..++..++ +.+.+|. |+|.
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMs-V~PG 140 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMT-SEPD 140 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEE-ecCC
Confidence 2 35777777765 455666667766665543 5566665 6665
No 344
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.57 E-value=1.8e+02 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCC--CEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE
Q 016596 228 MAKYVQYQADNGA--QAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS 305 (386)
Q Consensus 228 ~~~~~~~~~e~G~--d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~ 305 (386)
..+.+++++++|+ |+|.+ |..-+ -.....++++.+++..++.+++.=-+++..-...+.+.|+|++-
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~i-D~a~g----------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITI-DIAHG----------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEE-ECCCC----------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 3466777889855 98886 32221 01233444777777655555544445543346778899999875
Q ss_pred c
Q 016596 306 L 306 (386)
Q Consensus 306 ~ 306 (386)
+
T Consensus 167 v 167 (326)
T PRK05458 167 V 167 (326)
T ss_pred E
Confidence 3
No 345
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=58.46 E-value=1.1e+02 Score=28.94 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 233 QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
+...+.|++.|.+.-+....=.. +.+ ++++.+++.. +.|+++..+........+.+.|+|++.+.
T Consensus 136 ~~~~~~g~~~i~l~~~~p~~~~~-----~~~----~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 136 RRAEAAGYKALVLTVDTPVLGRR-----LTW----DDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHcCCCEEEEecCCCCCCCC-----CCH----HHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence 34455799988875432210000 233 3455555543 46888886644334577789999998663
No 346
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=58.37 E-value=1.6e+02 Score=27.49 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcC--------CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--h
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWAT--------ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--L 292 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~--------~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~ 292 (386)
-.+..++.++.+.++|++.|=++-+..+ .+++ ..+.+++.+..+. +.++..++-... . .
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~ 87 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-------DEFLRRLLGDSKG---NTKIAVMVDYGNDDIDL 87 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-------HHHHHHHHhhhcc---CCEEEEEECCCCCCHHH
Confidence 3455566777788899998866533221 1121 1244555554431 245666665442 2 3
Q ss_pred HHHHHhcCCCEEEcCC-CCCHHHHHH------HhCCCeeEEecC-CcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 293 LERLALTGVDVVSLDW-TVDMAEGRR------RLGPDVAVQGNV-DPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~-~~dl~e~~~------~~g~~~~l~G~v-d~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
++...+.|++.+.+.. ..++.++++ ..|-+ +..++ +. ..-++|.+.+.++++.+. +-..+.|. +
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~--v~~~~~~a--~~~~~~~~~~~~~~~~~~-g~~~i~l~---D 159 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYE--VFFNLMAI--SGYSDEELLELLELVNEI-KPDVFYIV---D 159 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCe--EEEEEEee--cCCCHHHHHHHHHHHHhC-CCCEEEEe---c
Confidence 6666788999876532 234443332 23332 22222 21 246889999888888664 43345553 2
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
.-.-..|+.+..+++++++
T Consensus 160 T~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 2234457778888888765
No 347
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=58.24 E-value=54 Score=32.75 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS 305 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~ 305 (386)
+...+.+++++++|+|+|.+ |...+- |. ...++++.+++..++.+++...|....-...+.++|+|++.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~i-D~a~g~-~~---------~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVI-DSAHGH-ST---------RIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEE-ECCCCC-Ch---------hHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 34567888899999999886 443321 21 23445666676554555555555554445677889999885
Q ss_pred c
Q 016596 306 L 306 (386)
Q Consensus 306 ~ 306 (386)
+
T Consensus 221 v 221 (404)
T PRK06843 221 V 221 (404)
T ss_pred E
Confidence 4
No 348
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.13 E-value=33 Score=32.63 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
.+.++..+++|+|.|++ |. |||++-++.+ +.+++ .+.+-..|+.+ .+..++++|+|+++.
T Consensus 215 leea~eA~~aGaDiImL-Dn----mspe~l~~av--------~~~~~-----~~~lEaSGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 215 LAQLETALAHGAQSVLL-DN----FTLDMMREAV--------RVTAG-----RAVLEVSGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred HHHHHHHHHcCCCEEEE-CC----CCHHHHHHHH--------HhhcC-----CeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 34555667889999874 33 6888776643 33332 34677889887 489999999999987
Q ss_pred CC
Q 016596 307 DW 308 (386)
Q Consensus 307 d~ 308 (386)
..
T Consensus 277 ga 278 (294)
T PRK06978 277 GA 278 (294)
T ss_pred Cc
Confidence 64
No 349
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=58.13 E-value=1.7e+02 Score=27.67 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHhCCCEEEEecCC--cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC----
Q 016596 236 ADNGAQAVQIFDSW--ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT---- 309 (386)
Q Consensus 236 ~e~G~d~i~i~d~~--~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~---- 309 (386)
.+.|+..++= ..+ +..=||..|+-....-=.++++.+++.+ |.|++-.++... ..+...++ +|++.+...
T Consensus 44 ~~~g~~~~fK-~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~-GlpvvTeV~~~~-~~~~~ae~-vDilQIgAr~~rn 119 (281)
T PRK12457 44 RKLGIPFVFK-ASFDKANRSSIHSYRGVGLDEGLRIFEEVKARF-GVPVITDVHEVE-QAAPVAEV-ADVLQVPAFLARQ 119 (281)
T ss_pred HHCCCcEEee-eccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCceEEEeCCHH-HHHHHhhh-CeEEeeCchhhch
Confidence 3578887552 222 2456677777666444456677777665 789888776432 45777888 899987642
Q ss_pred CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 310 VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 310 ~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
.|+-++..+.|+ |..+ +-+++|....++++...+ ....||.
T Consensus 120 tdLL~a~~~t~k---------pV~lKrGqf~s~~e~~~aae~i~~~G-n~~vilc 164 (281)
T PRK12457 120 TDLVVAIAKTGK---------PVNIKKPQFMSPTQMKHVVSKCREAG-NDRVILC 164 (281)
T ss_pred HHHHHHHhccCC---------eEEecCCCcCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 355544444442 2222 457888888888887664 3355553
No 350
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=57.88 E-value=1.8e+02 Score=28.01 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC----CCCH-------------HHHHHhhHHHHHHHHHHHHhhCCCC
Q 016596 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT----ELSP-------------VDFEEFSLPYLKQIVDTVKQTHPDL 280 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~----~iSp-------------~~f~ef~~P~~k~l~~~i~~~~~~~ 280 (386)
.+=++.+.+...+.++...++|.|+|-+.-.-+. |+|| +.=-+|...-++.+-+.+ |++.
T Consensus 146 ~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G~d~ 222 (336)
T cd02932 146 REEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---PEDK 222 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---CCCc
Q ss_pred cEEEEecCC------------cchHHHHHhcCCCEEEcC-------------CCCCHHH---HHHHhCCCeeEEecCCcC
Q 016596 281 SLILYASGS------------GGLLERLALTGVDVVSLD-------------WTVDMAE---GRRRLGPDVAVQGNVDPG 332 (386)
Q Consensus 281 ~~~~H~cG~------------~~~l~~l~e~g~d~l~~d-------------~~~dl~e---~~~~~g~~~~l~G~vd~~ 332 (386)
++.+-+... ..++..+.+.|+|.+++. ...++.. +++.+.-.+...|++
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i--- 299 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLI--- 299 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCC---
Q ss_pred ccCCCHHHHHHHHHHH-HHHcC-CCCeEEecC
Q 016596 333 ALFGSKDFITNRINDT-VRKAG-RWKHILNLG 362 (386)
Q Consensus 333 ~l~gt~eev~~~v~~~-i~~~~-~~g~Ils~g 362 (386)
.|+++.++.+.+- .+... ++.+|-.|.
T Consensus 300 ---~t~~~a~~~l~~g~aD~V~~gR~~i~dP~ 328 (336)
T cd02932 300 ---TDPEQAEAILESGRADLVALGRELLRNPY 328 (336)
T ss_pred ---CCHHHHHHHHHcCCCCeehhhHHHHhCcc
No 351
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.87 E-value=89 Score=26.07 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=7.2
Q ss_pred CCCCcHHHHHHHHH
Q 016596 366 KVGTPEENVAHFFE 379 (386)
Q Consensus 366 ~~~tp~Eni~a~~~ 379 (386)
+|+|+++.+...++
T Consensus 116 ~pgt~~~~iv~~l~ 129 (134)
T TIGR01501 116 APGTPPEVVIADLK 129 (134)
T ss_pred CcCCCHHHHHHHHH
Confidence 45556655544443
No 352
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=57.72 E-value=2.2e+02 Score=28.84 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC---CCCcEEEEecCC-cc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH---PDLSLILYASGS-GG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~---~~~~~~~H~cG~-~~--~l~~l~e~g~d~l~~d 307 (386)
+++.|++.....++++++..++++. .+++.. ++..+.+=+.++ .+ .+..+.++|++-+++.
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~--------~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiG 168 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMA--------LLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLG 168 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHH--------HHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEEC
Confidence 4667777776777888887666543 333321 122233333333 22 5789999999988775
No 353
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=57.46 E-value=1.1e+02 Score=35.17 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHH----------------------HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHH
Q 016596 203 FSKIKRLAFSQPKVLHALLRKFT----------------------TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEE 260 (386)
Q Consensus 203 ~~~~~~~l~~~Pe~v~~ll~~~~----------------------~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~e 260 (386)
|.-.++.+.+||=...+.+++.. +++..+++...+.|.|++-++|.+-
T Consensus 580 fd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN---------- 649 (1143)
T TIGR01235 580 FDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN---------- 649 (1143)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCc----------
Confidence 66677788888844444444322 4566677888889999999999873
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEE--EEecC-----C---cc------hHHHHHhcCCCEEEcC
Q 016596 261 FSLPYLKQIVDTVKQTHPDLSLI--LYASG-----S---GG------LLERLALTGVDVVSLD 307 (386)
Q Consensus 261 f~~P~~k~l~~~i~~~~~~~~~~--~H~cG-----~---~~------~l~~l~e~g~d~l~~d 307 (386)
-.+.++..++.+++.| ..+- +-..| . ++ ....+.+.|++.|.+-
T Consensus 650 -~~~n~~~~~~~~~~~g--~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ik 709 (1143)
T TIGR01235 650 -WVENMRVGMDAVAEAG--KVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIK 709 (1143)
T ss_pred -CHHHHHHHHHHHHHcC--CEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 2345667788888874 2222 22223 1 11 1245567899999873
No 354
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=57.43 E-value=61 Score=30.90 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE--EEecCCcc-h-HHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI--LYASGSGG-L-LERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~--~H~cG~~~-~-l~~l~e~g~ 301 (386)
+-.++-++++.++|||+||+.- .-++++.+++. +.+ .+|++ +..-|... . ++.|.++|+
T Consensus 166 deAI~Ra~aY~eAGAD~ifi~~----~~~~~~i~~~~--------~~~-----~~Pl~~n~~~~~~~p~~s~~~L~~lGv 228 (292)
T PRK11320 166 DAAIERAQAYVEAGADMIFPEA----MTELEMYRRFA--------DAV-----KVPILANITEFGATPLFTTEELASAGV 228 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEecC----CCCHHHHHHHH--------Hhc-----CCCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 4455667889999999999733 33566655543 333 23553 23234433 3 789999999
Q ss_pred CEEEcCC
Q 016596 302 DVVSLDW 308 (386)
Q Consensus 302 d~l~~d~ 308 (386)
..+++..
T Consensus 229 ~~v~~~~ 235 (292)
T PRK11320 229 AMVLYPL 235 (292)
T ss_pred cEEEECh
Confidence 9988764
No 355
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=57.18 E-value=17 Score=38.18 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeE--EecCCcCcc-CC
Q 016596 264 PYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAV--QGNVDPGAL-FG 336 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l--~G~vd~~~l-~g 336 (386)
--++++++.+++. |++ +=.||... .++.|..+|++-+|+.. ..+..+|+.+-. +.+ +-.+-...| ..
T Consensus 483 ~~i~~v~~~a~~~--g~~--v~vCGe~A~dp~~~~lLlglGi~~lSm~p-~~i~~vk~~i~~-~~~~~~~~~a~~~l~~~ 556 (575)
T PRK11177 483 NLIKQVIDASHAE--GKW--TGMCGELAGDERATLLLLGMGLDEFSMSA-ISIPRIKKIIRN-TNFEDAKALAEQALAQP 556 (575)
T ss_pred HHHHHHHHHHHhc--CCe--EEEeCCCCCCHHHHHHHHHCCCCeEEECH-HHHHHHHHHHHh-CCHHHHHHHHHHHHcCC
Confidence 3567777778776 565 46899752 37999999999999985 466777776642 111 001111124 68
Q ss_pred CHHHHHHHHHHHHHHc
Q 016596 337 SKDFITNRINDTVRKA 352 (386)
Q Consensus 337 t~eev~~~v~~~i~~~ 352 (386)
|.++|++.+++.++..
T Consensus 557 ~~~~v~~~~~~~~~~~ 572 (575)
T PRK11177 557 TADELMTLVNKFIEEK 572 (575)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999877643
No 356
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.17 E-value=87 Score=30.55 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred HHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCC----------c--ch----
Q 016596 233 QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGS----------G--GL---- 292 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~----------~--~~---- 292 (386)
+..++.|+|++-+.--+++--.+ .-++--.-++.++.+.+++. |.|+++.. .|. . ..
T Consensus 113 e~a~~~GAdAVk~lv~~~~d~~~-~~~~~~~~~l~rv~~ec~~~--giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a 189 (340)
T PRK12858 113 RRIKEAGADAVKLLLYYRPDEDD-AINDRKHAFVERVGAECRAN--DIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKT 189 (340)
T ss_pred HHHHHcCCCEEEEEEEeCCCcch-HHHHHHHHHHHHHHHHHHHc--CCceEEEEeccCCCccccccccccccCHHHHHHH
Confidence 44678899987654333321111 12455666789999999997 68887752 221 1 11
Q ss_pred HHHHH--hcCCCEEEcCCCCCH---------------HHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcC
Q 016596 293 LERLA--LTGVDVVSLDWTVDM---------------AEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 293 l~~l~--e~g~d~l~~d~~~dl---------------~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~ 353 (386)
...+. ++|+|++-+....|+ +++.+.|.. ++-..+++-..| --|.++..+.++..++.+.
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~-~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFRE-QSDATDLPFIFLSAGVSPELFRRTLEFACEAGA 268 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHH-HHhhCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 24455 499999977665443 333333321 122233433333 1356778888888888654
Q ss_pred C-CCeEEe
Q 016596 354 R-WKHILN 360 (386)
Q Consensus 354 ~-~g~Ils 360 (386)
+ .|++++
T Consensus 269 ~f~Gvl~G 276 (340)
T PRK12858 269 DFSGVLCG 276 (340)
T ss_pred Cccchhhh
Confidence 2 455543
No 357
>PRK05660 HemN family oxidoreductase; Provisional
Probab=57.08 E-value=2e+02 Score=28.28 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEecCCc-c--hHHHHHhcCCCEEEcC
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYASGSG-G--LLERLALTGVDVVSLD 307 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~d 307 (386)
.+++.|++.....++++++..+++ ++.+++..+ +.-+.+-+-++. + .+..+.++|++-+++.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~l--------l~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiG 124 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRL--------LDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIG 124 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHH--------HHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEec
Confidence 467788888777889998876664 444444211 223344444332 3 4788999999988764
No 358
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=57.04 E-value=1.3e+02 Score=26.98 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~e~g~d~l~~ 306 (386)
+.++.+.+.|++.+.+.|-.+.+-.. .--.+..+++.+.. +.|+ ..+|...- +..+.+.|++.+.+
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~----~~~~~~i~~i~~~~-----~~pv--~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGK----PVNLELIEAIVKAV-----DIPV--QVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCC----cccHHHHHHHHHHC-----CCCE--EEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 45666778899999998853322111 01133334444432 3564 44676653 56667789987766
Q ss_pred CCC-----CCHHHHHHHhCCCeeEEecCCc
Q 016596 307 DWT-----VDMAEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 307 d~~-----~dl~e~~~~~g~~~~l~G~vd~ 331 (386)
... ..+.++.+.+++++.+ .+|.
T Consensus 103 g~~~l~~~~~l~ei~~~~~~~i~v--sid~ 130 (233)
T PRK00748 103 GTAAVKNPELVKEACKKFPGKIVV--GLDA 130 (233)
T ss_pred CchHHhCHHHHHHHHHHhCCCcee--eeec
Confidence 543 2467777888776555 4553
No 359
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=56.95 E-value=1.9e+02 Score=27.89 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHhCCCEEEEecCC--cC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC--EEEcCC
Q 016596 235 QADNGAQAVQIFDSW--AT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD--VVSLDW 308 (386)
Q Consensus 235 ~~e~G~d~i~i~d~~--~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d--~l~~d~ 308 (386)
+.++|+.++-++-.. +. .++.+ .+.++++.+++. +.++++|+. ..+....+.|.. +.++..
T Consensus 90 l~~~Gv~g~K~f~~~~~~~~~~~~~~--------~l~~~~~~~~~~--g~~v~~H~E---r~~~la~~~g~~l~i~Hiss 156 (337)
T cd01302 90 LFDAGINSLKVFMNYYFGELFDVDDG--------TLMRTFLEIASR--GGPVMVHAE---RAAQLAEEAGANVHIAHVSS 156 (337)
T ss_pred HHHcCCcEEEEEEeccCCCccccCHH--------HHHHHHHHHHhc--CCeEEEeHH---HHHHHHHHhCCcEEEEeCCC
Confidence 346798887665321 11 23322 345566677765 578889988 333444455655 446655
Q ss_pred CCCHHHHHHHhCCCeeEEecCCcCccCCCHHH
Q 016596 309 TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDF 340 (386)
Q Consensus 309 ~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~ee 340 (386)
...++.+++.-...+-+...+-|..|.-|.++
T Consensus 157 ~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~ 188 (337)
T cd01302 157 GEALELIKFAKNKGVKVTCEVCPHHLFLDESM 188 (337)
T ss_pred HHHHHHHHHHHHCCCcEEEEcChhhheeCHHH
Confidence 44544444322222445566666654333333
No 360
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=56.73 E-value=2.1e+02 Score=28.25 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCC-CcEEEEecCCcc-h---HHHHHhcCCCE
Q 016596 231 YVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPD-LSLILYASGSGG-L---LERLALTGVDV 303 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~-~~~~~H~cG~~~-~---l~~l~e~g~d~ 303 (386)
.+..+++.|+|+|..-...+. +++.+.=.+.+ ++.++.+.+.+++ .+++..+++... . .+...+.|+++
T Consensus 151 ~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v----~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~ 226 (367)
T cd08205 151 LAYELALGGIDLIKDDELLADQPYAPFEERVRAC----MEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANA 226 (367)
T ss_pred HHHHHHhcCCCeeeccccccCcccCCHHHHHHHH----HHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 334567889999875445554 67766555544 4445555533323 334445556543 2 35667899998
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+.+.
T Consensus 227 vmv~ 230 (367)
T cd08205 227 LLIN 230 (367)
T ss_pred EEEe
Confidence 8654
No 361
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=56.68 E-value=89 Score=28.70 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~e~g~d~l~~ 306 (386)
+.++.+-+.|||-+.+.|-.++--. ++......++..+.+ .+| +-.-|.+.- +..+...|+|=+|+
T Consensus 34 elA~~Y~e~GADElvFlDItAs~~g----r~~~~~vv~r~A~~v-----fiP--ltVGGGI~s~eD~~~ll~aGADKVSI 102 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITASSEG----RETMLDVVERVAEQV-----FIP--LTVGGGIRSVEDARKLLRAGADKVSI 102 (256)
T ss_pred HHHHHHHHcCCCeEEEEeccccccc----chhHHHHHHHHHhhc-----eee--eEecCCcCCHHHHHHHHHcCCCeeee
Confidence 5667788999999988886654333 333333334444333 223 445566653 55667789999988
Q ss_pred CCC--CC---HHHHHHHhCCCeeEEecCCcCc-----------c-CCCHH----HHHHHHHHHHHHcCCCCeEEec--CC
Q 016596 307 DWT--VD---MAEGRRRLGPDVAVQGNVDPGA-----------L-FGSKD----FITNRINDTVRKAGRWKHILNL--GH 363 (386)
Q Consensus 307 d~~--~d---l~e~~~~~g~~~~l~G~vd~~~-----------l-~gt~e----ev~~~v~~~i~~~~~~g~Ils~--gc 363 (386)
... .| +.++.++||.. |+...||... . +|..+ +..+-++++-+.+.| =..|++ ..
T Consensus 103 NsaAv~~p~lI~~~a~~FGsQ-ciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~D 180 (256)
T COG0107 103 NSAAVKDPELITEAADRFGSQ-CIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAG-EILLTSMDRD 180 (256)
T ss_pred ChhHhcChHHHHHHHHHhCCc-eEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCc-eEEEeeeccc
Confidence 653 23 57888999987 5555687521 1 22222 445555554333222 233332 13
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 016596 364 GIKVGTPEENVAHFFEVA 381 (386)
Q Consensus 364 ~i~~~tp~Eni~a~~~a~ 381 (386)
+...+-..|-++++.+++
T Consensus 181 Gtk~GyDl~l~~~v~~~v 198 (256)
T COG0107 181 GTKAGYDLELTRAVREAV 198 (256)
T ss_pred ccccCcCHHHHHHHHHhC
Confidence 445555666666665544
No 362
>PRK09989 hypothetical protein; Provisional
Probab=56.65 E-value=1.3e+02 Score=27.62 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=50.1
Q ss_pred hHHHHHhcCCCEEEcC--CCCCHHHHHHHh---CCCeeEEec----CCcC--c--c-CCCHHHHHHHHHHHHHHcC--CC
Q 016596 292 LLERLALTGVDVVSLD--WTVDMAEGRRRL---GPDVAVQGN----VDPG--A--L-FGSKDFITNRINDTVRKAG--RW 355 (386)
Q Consensus 292 ~l~~l~e~g~d~l~~d--~~~dl~e~~~~~---g~~~~l~G~----vd~~--~--l-~gt~eev~~~v~~~i~~~~--~~ 355 (386)
.++.+.++|++.+.+- ...+.+++++.+ |=+++.++. ++.. . . ....++.++..+++|+.+. +.
T Consensus 20 ~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~ 99 (258)
T PRK09989 20 RFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNC 99 (258)
T ss_pred HHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCc
Confidence 4677788888888652 224555555554 433443321 1111 0 1 2345677788888887765 55
Q ss_pred CeE-EecCCCCCCCC--------cHHHHHHHHHHHHhhc
Q 016596 356 KHI-LNLGHGIKVGT--------PEENVAHFFEVAKAIR 385 (386)
Q Consensus 356 g~I-ls~gc~i~~~t--------p~Eni~a~~~a~~~yg 385 (386)
.+| +.+|. ++... -.++++.+.+.++++|
T Consensus 100 ~~v~v~~g~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~g 137 (258)
T PRK09989 100 EQVHVMAGV-VPAGEDAERYRAVFIDNLRYAADRFAPHG 137 (258)
T ss_pred CEEEECccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555 33443 22222 2356666677666665
No 363
>PRK06801 hypothetical protein; Provisional
Probab=56.57 E-value=1.8e+02 Score=27.58 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
.+++..+.++.+|.-..+.. .+.+.+ .+.++.+.+.+.. .+|+.+|.+-... .+..-.+.|++.+.+|
T Consensus 34 vi~AAe~~~~PvIl~~~~~~~~~~~~~----~~~~~~~~~a~~~-----~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D 104 (286)
T PRK06801 34 LFAAAKQERSPFIINIAEVHFKYISLE----SLVEAVKFEAARH-----DIPVVLNLDHGLHFEAVVRALRLGFSSVMFD 104 (286)
T ss_pred HHHHHHHHCCCEEEEeCcchhhcCCHH----HHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHhCCcEEEEc
Confidence 34455566777765333222 233422 2334444443332 5899999864333 4677788899999887
Q ss_pred CC
Q 016596 308 WT 309 (386)
Q Consensus 308 ~~ 309 (386)
..
T Consensus 105 ~S 106 (286)
T PRK06801 105 GS 106 (286)
T ss_pred CC
Confidence 54
No 364
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=56.39 E-value=61 Score=30.58 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCC--CCH-HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc---------c-
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATE--LSP-VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG---------G- 291 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~--iSp-~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~---------~- 291 (386)
++..++|++-..+.|-+.+.+-+.|.+. -+. +.-+..-..-+++|++..++++.++-+..|.-+.+ .
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~ 110 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDE 110 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHH
Confidence 5667778888888999999885567520 000 01111223668899999999854455666776511 1
Q ss_pred hHHHHHhcCCCEEEcCC
Q 016596 292 LLERLALTGVDVVSLDW 308 (386)
Q Consensus 292 ~l~~l~e~g~d~l~~d~ 308 (386)
.++.+.+.|+.++-+|.
T Consensus 111 ~f~~~~~~Gv~GvKidF 127 (273)
T PF10566_consen 111 AFKLYAKWGVKGVKIDF 127 (273)
T ss_dssp HHHHHHHCTEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeCc
Confidence 25666777777775553
No 365
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=56.38 E-value=10 Score=36.38 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHH
Q 016596 334 LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENV 374 (386)
Q Consensus 334 l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni 374 (386)
+.||||+|.+.+++..+..|-..+++..+.+.|.+...+++
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 312 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFESMGSEDEIIASI 312 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeccCCCCHHHHHHHH
Confidence 37999999999998888877457888877555444333333
No 366
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=56.37 E-value=1.1e+02 Score=27.65 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHH-HHhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLER-LALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~-l~e~g~d~l 304 (386)
.++++.+.+.|++.+.+.+-...- ..+.+-++.++++.+.+ +.| +-..|... .+.. +.+.|++.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g----~~~g~~~~~~~~i~~~~-----~ip--via~GGi~s~~di~~~l~~~gadgV 224 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDG----TMKGYDLELIKTVSDAV-----SIP--VIALGGAGSLDDLVEVALEAGASAV 224 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccC----CcCCCCHHHHHHHHhhC-----CCC--EEEECCCCCHHHHHHHHHHcCCCEE
Confidence 466677777888888776521110 11222345555555443 345 23444443 2444 666788877
Q ss_pred EcC
Q 016596 305 SLD 307 (386)
Q Consensus 305 ~~d 307 (386)
.+.
T Consensus 225 ~vg 227 (232)
T TIGR03572 225 AAA 227 (232)
T ss_pred EEe
Confidence 654
No 367
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.32 E-value=1.7e+02 Score=27.03 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-------c-c-h
Q 016596 223 KFTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-------G-G-L 292 (386)
Q Consensus 223 ~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-------~-~-~ 292 (386)
...+.+.+.++.....|++.+.+.-.. +..-+.+...+.....++++.+.++++ |+.+.+|..+. + . .
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gv~l~iE~~~~~~~~~~~t~~~~ 164 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI--GMDLILEPLTPYESNVVCNANDV 164 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEEEEecCCCCcccccCCHHHH
Confidence 334555566667778899988764321 112345555566667999999999997 68888887541 1 1 2
Q ss_pred HHHHHhcCCC--EEEcC------CCCCHHHHHHHhCCCeeEE--ecCCcC----cc--CCCHHHHHHHHHHHHHHcC-CC
Q 016596 293 LERLALTGVD--VVSLD------WTVDMAEGRRRLGPDVAVQ--GNVDPG----AL--FGSKDFITNRINDTVRKAG-RW 355 (386)
Q Consensus 293 l~~l~e~g~d--~l~~d------~~~dl~e~~~~~g~~~~l~--G~vd~~----~l--~gt~eev~~~v~~~i~~~~-~~ 355 (386)
+..+.+.+-. .+.+| ...++.+..+.+++++.-+ -..+.. .. .|..+ -.++.+.|+..+ .|
T Consensus 165 ~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~rI~~vHi~D~~~~~~~~~~pG~G~id--~~~i~~~L~~~gy~g 242 (275)
T PRK09856 165 LHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMP--LRELMRDIIDRGYEG 242 (275)
T ss_pred HHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCCcEEEEEEEcCCCCCCCCcCCCCCCCC--HHHHHHHHHHcCCCc
Confidence 3444555421 12222 2247777777788874321 112221 11 35443 466666777766 55
Q ss_pred CeEEec
Q 016596 356 KHILNL 361 (386)
Q Consensus 356 g~Ils~ 361 (386)
-+++=.
T Consensus 243 ~~~lE~ 248 (275)
T PRK09856 243 YCTVEL 248 (275)
T ss_pred eEEEEe
Confidence 555544
No 368
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.12 E-value=1.6e+02 Score=26.73 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h--HHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L--LERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~--l~~l~e~g~d~l~ 305 (386)
+.++.+.+.|++.+++.|-.+.. =..+. ....+++.+.. +.|+++ +|... . ++.+.+.|++.+.
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~-----~~~i~~i~~~~-----~~~l~v--~GGi~~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAFEGERKN-----AEAIEKIIEAV-----GVPVQL--GGGIRSAEDAASLLDLGVDRVI 103 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhhcCCccc-----HHHHHHHHHHc-----CCcEEE--cCCcCCHHHHHHHHHcCCCEEE
Confidence 45666778999999988744321 00111 23444554433 356544 67665 3 6778899999887
Q ss_pred cCCCC-----CHHHHHHHhCCC
Q 016596 306 LDWTV-----DMAEGRRRLGPD 322 (386)
Q Consensus 306 ~d~~~-----dl~e~~~~~g~~ 322 (386)
+.... -+.++.+.+|.+
T Consensus 104 iGs~~~~~~~~~~~i~~~~g~~ 125 (241)
T PRK13585 104 LGTAAVENPEIVRELSEEFGSE 125 (241)
T ss_pred EChHHhhChHHHHHHHHHhCCC
Confidence 76531 357888888754
No 369
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=55.90 E-value=78 Score=29.64 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
..++...++|++.+. .+.+-..-||-.|.-+...-++-+-+..++. |.|++.-+= +...++...++ +|++.+...
T Consensus 63 ~~A~~vk~~Ga~~lR-GgafKPRTSPYsFQGlge~gL~~l~~a~~~~--Gl~vvtEvm-~~~~~e~~~~y-~DilqvGAR 137 (286)
T COG2876 63 ETAESVKAAGAKALR-GGAFKPRTSPYSFQGLGEEGLKLLKRAADET--GLPVVTEVM-DVRDVEAAAEY-ADILQVGAR 137 (286)
T ss_pred HHHHHHHHcchhhcc-CCcCCCCCCcccccccCHHHHHHHHHHHHHc--CCeeEEEec-CHHHHHHHHhh-hhHHHhccc
Confidence 445566778988765 4444445666666655555555555555554 567665442 22357888888 888887654
Q ss_pred --CCHHHHHHHhCCCeeEEecCC-cCcc----CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 310 --VDMAEGRRRLGPDVAVQGNVD-PGAL----FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 310 --~dl~e~~~~~g~~~~l~G~vd-~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
.|..-+|+ .| +.+ |.+| ..|.||--..+.-++..+ +++.||.
T Consensus 138 NMQNF~LLke-~G-------~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILC 186 (286)
T COG2876 138 NMQNFALLKE-VG-------RQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILC 186 (286)
T ss_pred chhhhHHHHH-hc-------ccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEE
Confidence 35555555 43 344 4444 478888888777777664 5678874
No 370
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.35 E-value=1.6e+02 Score=26.50 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVS 305 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~ 305 (386)
.++++.+.+.|++.+.+.|-.+.+-.. ..-+++.+++.+.+ +.| +...|... ..+.+.+.|+|.+-
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~----~~~~~~i~~i~~~~-----~~p--v~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGE----PVNLELIEEIVKAV-----GIP--VQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCC----CCCHHHHHHHHHhc-----CCC--EEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 346666778899999998754432111 12244444444443 245 45677654 26777789999876
Q ss_pred cCCC--CC---HHHHHHHhCC-CeeEEecCCc--Cc-c-C----CCHHHHHHHHHHHHHHcCCCCeEEecC--CCCCCCC
Q 016596 306 LDWT--VD---MAEGRRRLGP-DVAVQGNVDP--GA-L-F----GSKDFITNRINDTVRKAGRWKHILNLG--HGIKVGT 369 (386)
Q Consensus 306 ~d~~--~d---l~e~~~~~g~-~~~l~G~vd~--~~-l-~----gt~eev~~~v~~~i~~~~~~g~Ils~g--c~i~~~t 369 (386)
+... .| +.++.+.+|. ++.+. +|. .. . . .+..+..+.++++ ...+-+.+++..= -+...+.
T Consensus 101 igs~~l~dp~~~~~i~~~~g~~~i~~s--id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ga~~iii~~~~~~g~~~g~ 177 (234)
T cd04732 101 IGTAAVKNPELVKELLKEYGGERIVVG--LDAKDGKVATKGWLETSEVSLEELAKRF-EELGVKAIIYTDISRDGTLSGP 177 (234)
T ss_pred ECchHHhChHHHHHHHHHcCCceEEEE--EEeeCCEEEECCCeeecCCCHHHHHHHH-HHcCCCEEEEEeecCCCccCCC
Confidence 6433 12 5677788876 44443 331 11 1 1 1233333333333 3444345555421 1122445
Q ss_pred cHHHHHHHHHH
Q 016596 370 PEENVAHFFEV 380 (386)
Q Consensus 370 p~Eni~a~~~a 380 (386)
+.+-++.+.+.
T Consensus 178 ~~~~i~~i~~~ 188 (234)
T cd04732 178 NFELYKELAAA 188 (234)
T ss_pred CHHHHHHHHHh
Confidence 56666666544
No 371
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=55.31 E-value=45 Score=36.09 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHH--HHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLER--LALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~--l~e~g 300 (386)
.++..+.++.+.++|++.+-| -++++++-|.. -++|+.++++.. +.|+-+|.+.... ..-. -.+.|
T Consensus 693 L~YY~~lA~el~~~GaHIlaI-KDMAGLLKP~A--------A~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AG 762 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAI-KDMAGLLKPAA--------AYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAG 762 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEe-hhhhhccCHHH--------HHHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcC
Confidence 355556666777788887665 45666777654 356788888876 7899999987654 2333 35789
Q ss_pred CCEEEc--------CCCCCHHHHHHHhC
Q 016596 301 VDVVSL--------DWTVDMAEGRRRLG 320 (386)
Q Consensus 301 ~d~l~~--------d~~~dl~e~~~~~g 320 (386)
+|++.. ....++..+...+.
T Consensus 763 vDivD~A~~smsG~TSQPsl~si~~al~ 790 (1149)
T COG1038 763 VDIVDVAMASMSGLTSQPSLNSIVAALA 790 (1149)
T ss_pred CchhhhhhhhccCCCCCccHHHHHHHhc
Confidence 998743 12245555555543
No 372
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=55.19 E-value=59 Score=30.86 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=73.4
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC--CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL--SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i--Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
.+|.+||.+.++++ +.|+|.+-++-.. -+.. .| ++=+.-+++|-+.+ ++|.++|
T Consensus 153 ~~yT~peea~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~~p----~Ld~~~L~~I~~~~-----~vPLVLH 209 (286)
T PRK08610 153 IIYADPKECQELVE--------------KTGIDALAPALGSVHGPYKGEP----KLGFKEMEEIGLST-----GLPLVLH 209 (286)
T ss_pred cccCCHHHHHHHHH--------------HHCCCEEEeeccccccccCCCC----CCCHHHHHHHHHHH-----CCCEEEe
Confidence 46899988777663 5688876654321 1221 12 22233444544433 5899999
Q ss_pred ecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 286 ASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 286 ~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
-.-... .+...+++|+.=+|++...- ...+++.+... -...||..+ ....+.+++.+++.|+.++
T Consensus 210 GgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~fg 280 (286)
T PRK08610 210 GGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNND---KEVYDPRKYLGPAREAIKETVKGKIKEFG 280 (286)
T ss_pred CCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 764443 46777889999898875421 23445544221 123677655 6777899999999999886
No 373
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.10 E-value=1.7e+02 Score=26.82 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=7.9
Q ss_pred HHHHHhcCCCEEEc
Q 016596 293 LERLALTGVDVVSL 306 (386)
Q Consensus 293 l~~l~e~g~d~l~~ 306 (386)
++.+.+.|++.+.+
T Consensus 94 i~~~~~~Gadgvii 107 (244)
T PRK13125 94 LNMARDVGADGVLF 107 (244)
T ss_pred HHHHHHcCCCEEEE
Confidence 45556666665543
No 374
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.10 E-value=1.7e+02 Score=27.26 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE---
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV--- 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l--- 304 (386)
++++.+.++|+|++.+.| ++++. ..++.+.++++ |...++.+--++. .+..+.+...+.+
T Consensus 108 ~f~~~~~~aGvdGviipD-----Lp~ee--------~~~~~~~~~~~--gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPD-----LPPEE--------AEELRAAAKKH--GLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred HHHHHHHHcCCcEEEECC-----CCHHH--------HHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 455567889999999865 33333 23456666776 4555544444553 4777776654433
Q ss_pred EcCC--------CCC----HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC-CCCC--C
Q 016596 305 SLDW--------TVD----MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG-IKVG--T 369 (386)
Q Consensus 305 ~~d~--------~~d----l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~-i~~~--t 369 (386)
+.-. ..+ +..+|+..+..+++-+|| .|+|++++.. +. . .|.|+++.-- ...+ -
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI------~~~e~v~~~~----~~-A-DGviVGSaiv~~~~~~~~ 240 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGI------STPEQAAAIA----AV-A-DGVIVGSALVKIIEENPE 240 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEccc------CCHHHHHHHH----Hh-C-CEEEEcHHHHHHHHhcch
Confidence 2211 112 345555444445555555 4567766543 22 2 3677766421 1111 2
Q ss_pred cHHHHHHHHHHHHh
Q 016596 370 PEENVAHFFEVAKA 383 (386)
Q Consensus 370 p~Eni~a~~~a~~~ 383 (386)
..+.++.+++..++
T Consensus 241 ~~~~~~~~~~~l~~ 254 (258)
T PRK13111 241 ALEALAAFVKELKA 254 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666666543
No 375
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=55.09 E-value=1.5e+02 Score=29.66 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e 237 (386)
+|+....+++++..++.|..+-...+++++.. .+ ++.++...+
T Consensus 183 eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~---em----------------------------------~~ra~~a~~ 225 (407)
T PRK09549 183 KRIVAGKEVLQEVYETTGHKTLYAVNLTGRTF---EL----------------------------------KEKAKRAAE 225 (407)
T ss_pred HHHHHHHHHHHHHHHhhCCcceEEEecCCCHH---HH----------------------------------HHHHHHHHH
Confidence 56778889999999998876655566665521 11 122334556
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----------c-h-HHHH-HhcCCCE
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-----------G-L-LERL-ALTGVDV 303 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-----------~-~-l~~l-~e~g~d~ 303 (386)
.|++.+++.--..++ + .++.+.+. .+. +.|+..|-.+.- . . +-.| .=.|+|.
T Consensus 226 ~G~~~~m~~~~~~G~-~----------al~~l~~~-~~~--~lpIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~ 291 (407)
T PRK09549 226 AGADALLFNVFAYGL-D----------VLQSLAED-PEI--PVPIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADF 291 (407)
T ss_pred cCCCeEEEeccccch-H----------HHHHHHhc-CCC--CcEEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCc
Confidence 899988764333332 1 12222221 111 345555544321 1 1 2222 2348887
Q ss_pred EEcCCC-----CCHHH---HHHHhCCCeeEEecCCcCcc--CC--CHHHHHHHHHHHHHHcCCCCeEEecCCCCC--CCC
Q 016596 304 VSLDWT-----VDMAE---GRRRLGPDVAVQGNVDPGAL--FG--SKDFITNRINDTVRKAGRWKHILNLGHGIK--VGT 369 (386)
Q Consensus 304 l~~d~~-----~dl~e---~~~~~g~~~~l~G~vd~~~l--~g--t~eev~~~v~~~i~~~~~~g~Ils~gc~i~--~~t 369 (386)
+++... .+.++ +.+.+-.. +|++.+..- .| ++. .+-++++.+| .-+|+..|-++. |+-
T Consensus 292 ~~~~~~~Gk~~~~~~~~~~~~~~~~~~---~~~~k~~~Pv~sGG~~~~----~~p~~~~~~G-~D~il~~GGgi~gHp~G 363 (407)
T PRK09549 292 SLFPSPYGSVALEKEEALAIAKELTED---DDPFKRSFPVPSAGIHPG----LVPLLIRDFG-KDVVINAGGGIHGHPNG 363 (407)
T ss_pred cccCCCcCCcCCCHHHHHHHHHHHhcc---ccCCCccEEeecCCCChh----HHHHHHHHhC-CceEEecCCceecCCCC
Confidence 765321 12222 22222221 455555441 11 222 3345566665 347888887773 678
Q ss_pred cHHHHHHHHHHHHh
Q 016596 370 PEENVAHFFEVAKA 383 (386)
Q Consensus 370 p~Eni~a~~~a~~~ 383 (386)
+.+..+|+.+++..
T Consensus 364 ~~aGa~A~rqA~ea 377 (407)
T PRK09549 364 AQGGGKAFRAAIDA 377 (407)
T ss_pred chhHHHHHHHHHHH
Confidence 88999999887654
No 376
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=54.75 E-value=2.2e+02 Score=28.60 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHhCCCEEEEec-CCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE-EEec-CC-c-c-hHHHHHhcC
Q 016596 233 QYQADNGAQAVQIFD-SWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI-LYAS-GS-G-G-LLERLALTG 300 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d-~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~-~H~c-G~-~-~-~l~~l~e~g 300 (386)
+.+.+.|..-|++.+ +... +.++ +++.++++.+++.. +.+.+ ++.. .+ . . .++.|++.|
T Consensus 174 ~~l~~~g~k~i~~~~~d~~~~g~d~~~~--------~~l~~Ll~~i~~~~-~i~~~r~~~~~p~~~~~ell~~~~~~~ 242 (430)
T TIGR01125 174 ERLVDQGVKEIILIAQDTTAYGKDLYRE--------SKLVDLLEELGKVG-GIYWIRMHYLYPDELTDDVIDLMAEGP 242 (430)
T ss_pred HHHHHCCCcEEEEEeECCCccccCCCCc--------ccHHHHHHHHHhcC-CccEEEEccCCcccCCHHHHHHHhhCC
Confidence 335556877776554 4322 2222 45677777777652 23321 2221 11 2 2 467777775
No 377
>PLN02489 homocysteine S-methyltransferase
Probab=54.60 E-value=2.1e+02 Score=27.75 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE-Eec---CCc---c---
Q 016596 222 RKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL-YAS---GSG---G--- 291 (386)
Q Consensus 222 ~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~-H~c---G~~---~--- 291 (386)
+.+.++..+.++.++++|+|.|.+ +.. -+.+.- +.+++.+++.+.++|+++ ..| |.. .
T Consensus 163 ~e~~~~~~~qi~~l~~~gvD~i~~-ET~---~~l~E~--------~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~ 230 (335)
T PLN02489 163 EKLKDFHRRRLQVLAEAGPDLIAF-ETI---PNKLEA--------QAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLL 230 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEE-ecc---CChHHH--------HHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHH
Confidence 456666677777888999998774 443 232221 234555555432355433 333 111 1
Q ss_pred -hHHHHHhc-CCCEEEcC--CCCCHHHHHHHh----CCCeeEEec----CCcC---cc--C-CCHHHHHHHHHHHHHHcC
Q 016596 292 -LLERLALT-GVDVVSLD--WTVDMAEGRRRL----GPDVAVQGN----VDPG---AL--F-GSKDFITNRINDTVRKAG 353 (386)
Q Consensus 292 -~l~~l~e~-g~d~l~~d--~~~dl~e~~~~~----g~~~~l~G~----vd~~---~l--~-gt~eev~~~v~~~i~~~~ 353 (386)
.++.+.+. +++++.+. ....+..+-+.+ ..-+.+.-| .|.. .. . .+|++..+.+++..+.+
T Consensus 231 ~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 309 (335)
T PLN02489 231 ECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAG- 309 (335)
T ss_pred HHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCC-
Confidence 13333332 46665443 111233333322 333444444 1221 11 1 46888999999987653
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
--|++ ||- +|.||.|+++.+++++
T Consensus 310 --a~iIG-GCC---gt~P~hI~al~~~l~~ 333 (335)
T PLN02489 310 --ASLIG-GCC---RTTPNTIRAISKALSE 333 (335)
T ss_pred --CcEEe-eCC---CCCHHHHHHHHHHHhc
Confidence 44666 443 5689999999998764
No 378
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=54.16 E-value=42 Score=32.00 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|.|++ |. +||++.++.+. .+++ .+.+=..|+++ .+..++++|+|+++..
T Consensus 219 eea~ea~~~gaDiI~L-Dn----~s~e~~~~av~--------~~~~-----~~~ieaSGGI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 219 DELDQALKAGADIIML-DN----FTTEQMREAVK--------RTNG-----RALLEVSGNVTLETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHHHHHcCCCEEEe-CC----CChHHHHHHHH--------hhcC-----CeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3455666789998874 33 57777666553 2332 35677888887 4899999999999875
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 281 a 281 (296)
T PRK09016 281 A 281 (296)
T ss_pred c
Confidence 4
No 379
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=53.72 E-value=2.1e+02 Score=27.45 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCcEEEEecCCc-c---hHHHHHhcCCC----EE-EcCCCCCHHHHHHHhCCCeeEEecCCcC-----c------c-CCC
Q 016596 279 DLSLILYASGSG-G---LLERLALTGVD----VV-SLDWTVDMAEGRRRLGPDVAVQGNVDPG-----A------L-FGS 337 (386)
Q Consensus 279 ~~~~~~H~cG~~-~---~l~~l~e~g~d----~l-~~d~~~dl~e~~~~~g~~~~l~G~vd~~-----~------l-~gt 337 (386)
|+|+..|..... . .++.|.+.|++ ++ +.|...|+...++.....+.| ++|.. . + +-+
T Consensus 155 G~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l--~~D~~g~~~~g~~~~~~~~~~~ 232 (308)
T PF02126_consen 155 GAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYL--EFDTIGREFSGKDKNPRVGYPP 232 (308)
T ss_dssp T-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EE--EETTTT-B-TTTTTCHSCTTS-
T ss_pred CCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEE--EecCCcccccCcccCccCCCCC
Confidence 689999998776 3 37889999987 33 677778998888877543333 24443 1 2 345
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 338 KDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 338 ~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
.++-.+.++++++.+-....+||.+
T Consensus 233 d~~ri~~l~~L~~~Gy~~qIlLS~D 257 (308)
T PF02126_consen 233 DEERIELLKELIEEGYADQILLSHD 257 (308)
T ss_dssp HHHHHHHHHHHHHTTTGGGEEE-HH
T ss_pred HHHHHHHHHHHHHcCCcCcEEEecc
Confidence 5667777888887765667788765
No 380
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=53.62 E-value=2.5e+02 Score=28.36 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC---CCCcEEEEecCCc-c--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH---PDLSLILYASGSG-G--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~---~~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~d 307 (386)
++..|++.+...++++++..++ +++.+++.. .+..+.+-+.+.. + .+..+.++|++-+++.
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~--------ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiG 168 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISR--------LMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFG 168 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHH--------HHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEc
Confidence 6777888777777888866555 444444421 1222333343432 2 5789999999988764
No 381
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.57 E-value=53 Score=31.31 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=63.9
Q ss_pred HhCCCEEEEec-CCcCCC---CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCC
Q 016596 237 DNGAQAVQIFD-SWATEL---SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTV 310 (386)
Q Consensus 237 e~G~d~i~i~d-~~~~~i---Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~ 310 (386)
+.|+|.+-++- +.-+.. +| ..-+..++++.+.+. ++|+++|-.-.+. .+....+.|+.-+++....
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~k----~l~~e~L~~i~~~~~----~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENWE----GLDLDHLEKLTEAVP----GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HcCCCEEeeccccccccCCCCCC----cCCHHHHHHHHHhcc----CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 56889876652 222222 12 344445555555542 3798888653333 4788899999999887542
Q ss_pred --CHHHHHHHhCCCee-E------EecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 311 --DMAEGRRRLGPDVA-V------QGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 311 --dl~e~~~~~g~~~~-l------~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
+..++.+.+-.... . -..+||..+ ....+.+++.+++.++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 288 (293)
T PRK07315 236 QIAFANATRKFARDYEANEAEYDKKKLFDPRKFLAPGVKAIQASVEERIDVFG 288 (293)
T ss_pred HHHHHHHHHHHHHhcccccccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333332211110 0 123666554 6777899999999999886
No 382
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=53.32 E-value=2.2e+02 Score=27.56 Aligned_cols=65 Identities=25% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec------------CCcc--hHHHH
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS------------GSGG--LLERL 296 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c------------G~~~--~l~~l 296 (386)
.++...+.|+..|.+.+....... ..++.++++.+++.++++ -+|+. |... .+..|
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~p~~~--------~~~~~~i~~~Ik~~~~~i--~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIHPDLD--------GDFYLDILRAVKEEVPGM--HIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCCC--------HHHHHHHHHHHHHHCCCc--eEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344456679998888643222222 245678888888864322 23321 3322 47888
Q ss_pred HhcCCCEEE
Q 016596 297 ALTGVDVVS 305 (386)
Q Consensus 297 ~e~g~d~l~ 305 (386)
++.|++.+.
T Consensus 148 keAGl~~i~ 156 (343)
T TIGR03551 148 KEAGLDSMP 156 (343)
T ss_pred HHhCccccc
Confidence 899998764
No 383
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.22 E-value=50 Score=30.77 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcC--CCCeEEecCCCCCCCCc--------HHHHHHHHHHHHhhc
Q 016596 340 FITNRINDTVRKAG--RWKHILNLGHGIKVGTP--------EENVAHFFEVAKAIR 385 (386)
Q Consensus 340 ev~~~v~~~i~~~~--~~g~Ils~gc~i~~~tp--------~Eni~a~~~a~~~yg 385 (386)
+..+.+++.|+.+. |..+|.-++...+.+.+ .++++.+.+.++++|
T Consensus 96 ~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G 151 (283)
T PRK13209 96 QALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRAS 151 (283)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445667777665 55666544433222222 334556666666665
No 384
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=53.17 E-value=1.7e+02 Score=26.11 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE-----EecCCcchHHHHHh
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL-----YASGSGGLLERLAL 298 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~-----H~cG~~~~l~~l~e 298 (386)
+.+....+++.+.++|+|.+.+.--.+.- ..+++++.+++. |.++.+ +..+-....+.+..
T Consensus 65 i~~~~~~~~~~~~~~gad~vtvh~e~g~~------------~l~~~i~~~~~~--g~~~~v~~~~~~~~~~~~~~~~~~~ 130 (215)
T PRK13813 65 IPNTNRLICEAVFEAGAWGIIVHGFTGRD------------SLKAVVEAAAES--GGKVFVVVEMSHPGALEFIQPHADK 130 (215)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEcCcCCHH------------HHHHHHHHHHhc--CCeEEEEEeCCCCCCCCCHHHHHHH
Q ss_pred c-------CCCEEEcCCCC--CHHHHHHHhCCCeeEE-ecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC
Q 016596 299 T-------GVDVVSLDWTV--DMAEGRRRLGPDVAVQ-GNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVG 368 (386)
Q Consensus 299 ~-------g~d~l~~d~~~--dl~e~~~~~g~~~~l~-G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~ 368 (386)
. |+++.-+.... .+.++++..+.++.+. |||.+..-. ++++++.+.+ ++|++.+ =+...
T Consensus 131 v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~---------~~~~~~aGad-~iV~Gr~-I~~~~ 199 (215)
T PRK13813 131 LAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQGGK---------AADAIKAGAD-YVIVGRS-IYNAA 199 (215)
T ss_pred HHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCCCCC---------HHHHHHcCCC-EEEECcc-cCCCC
Q ss_pred CcHHHHHHHHHHHHh
Q 016596 369 TPEENVAHFFEVAKA 383 (386)
Q Consensus 369 tp~Eni~a~~~a~~~ 383 (386)
-|.+.++++.+..++
T Consensus 200 d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 200 DPREAAKAINEEIRG 214 (215)
T ss_pred CHHHHHHHHHHHHhc
No 385
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=53.13 E-value=90 Score=29.61 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
.+|++||.+.++++.. |+|.+-++-... +....+- ++=+.-+++|-+.+ ++|.++|-+
T Consensus 152 ~~~T~pe~a~~Fv~~T--------------gvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~i~~~~-----~vPLVlHGg 210 (284)
T PRK12857 152 AAMTDPEEARRFVEET--------------GVDALAIAIGTAHGPYKGEP--KLDFDRLAKIKELV-----NIPIVLHGS 210 (284)
T ss_pred hhcCCHHHHHHHHHHH--------------CCCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-----CCCEEEeCC
Q ss_pred CCcc--hHHHHHhcCCCEEEcCCCC---CHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCC
Q 016596 288 GSGG--LLERLALTGVDVVSLDWTV---DMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWK 356 (386)
Q Consensus 288 G~~~--~l~~l~e~g~d~l~~d~~~---dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g 356 (386)
-... .+....++|+.=+|+.... =...+++.+... -+..||..+ ....+.+++.+++.++.++ .++
T Consensus 211 SG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 283 (284)
T PRK12857 211 SGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKN---PDEIDPRKILGPAREAAKEVIREKIRLFGSAGK 283 (284)
T ss_pred CCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 386
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=53.10 E-value=73 Score=32.90 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCE
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDV 303 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~ 303 (386)
-..+.+++++++|+|+|.+ |.. .--|..+ .+.++.+++.+++.++ ++|+.. --..+.+.|+|+
T Consensus 248 ~~~~r~~~l~~ag~d~i~i-D~~-~g~~~~~---------~~~i~~ik~~~p~~~v---i~g~v~t~e~a~~a~~aGaD~ 313 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVL-DSS-QGDSIYQ---------LEMIKYIKKTYPELDV---IGGNVVTMYQAQNLIQAGVDG 313 (505)
T ss_pred cHHHHHHHHHHcCCCEEEE-eCC-CCCcHHH---------HHHHHHHHHhCCCCcE---EEecCCCHHHHHHHHHcCcCE
Confidence 3457788899999999886 432 1122222 2345666665434333 455543 356778899999
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
+-+
T Consensus 314 i~v 316 (505)
T PLN02274 314 LRV 316 (505)
T ss_pred EEE
Confidence 843
No 387
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=52.89 E-value=50 Score=29.99 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHH-hcCC-CEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLA-LTGV-DVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~-e~g~-d~l~ 305 (386)
+|++.+.++|||.|.+. +| .-++..++++.+|+. |+...+=.+-.+. .++.+. ++.. -+.+
T Consensus 75 ~~i~~fa~agad~It~H-----------~E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMs 139 (220)
T COG0036 75 RYIEAFAKAGADIITFH-----------AE--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLDDVDLVLLMS 139 (220)
T ss_pred HHHHHHHHhCCCEEEEE-----------ec--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhhCCEEEEEe
Confidence 67778899999999873 22 456778999999998 5666777776665 355444 4332 2234
Q ss_pred cCCC-----------CCHHHHHHHhCC
Q 016596 306 LDWT-----------VDMAEGRRRLGP 321 (386)
Q Consensus 306 ~d~~-----------~dl~e~~~~~g~ 321 (386)
+++. .-++++++.+++
T Consensus 140 VnPGfgGQ~Fi~~~l~Ki~~lr~~~~~ 166 (220)
T COG0036 140 VNPGFGGQKFIPEVLEKIRELRAMIDE 166 (220)
T ss_pred ECCCCcccccCHHHHHHHHHHHHHhcc
Confidence 4332 146677777765
No 388
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=52.87 E-value=48 Score=31.29 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=73.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC---CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL---SPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL 284 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i---Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~ 284 (386)
.++.+||.+.++++. .|+|.+-++-.. -+.. .|+ +=+.-+++|-+.+ ++|.++
T Consensus 145 ~~~T~pe~a~~Fv~~--------------TgvD~LAvsiGt~HG~Y~~~~p~----L~~~~L~~i~~~~-----~vPLVl 201 (276)
T cd00947 145 GLLTDPEEAEEFVEE--------------TGVDALAVAIGTSHGAYKGGEPK----LDFDRLKEIAERV-----NVPLVL 201 (276)
T ss_pred ccCCCHHHHHHHHHH--------------HCCCEEEeccCccccccCCCCCc----cCHHHHHHHHHHh-----CCCEEE
Confidence 568999888777665 578876554321 1222 122 2233455555555 479999
Q ss_pred EecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 285 YASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 285 H~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
|-.-... .+....++|+.=+|+....- ...+++.+... -+..|+..+ ....+.+++.+++.++.++
T Consensus 202 HGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 273 (276)
T cd00947 202 HGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAEN---PKEFDPRKYLAPAIEAVKEVVKHKMELFG 273 (276)
T ss_pred eCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9764443 47777889999888875431 23445544321 123566555 6777889999999998875
No 389
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.77 E-value=1.9e+02 Score=26.74 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc------hHHHH
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG------LLERL 296 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l 296 (386)
..+.+.+.++...+.|+..|.+.... ..-.+.+...+.+...++++.+.++++ |+.+.+|.+++.. .+..+
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~--GV~i~iE~~~~~~~~~~~~~~~ll 174 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRA--SVTLAFEIMDTPFMNSISKALGYA 174 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHh--CCEEEEeecCCcccCCHHHHHHHH
Confidence 34455566667778899988764211 111233444566677999999999887 6888898875431 13444
Q ss_pred HhcCCC--EEEcC------CCCCHHHHHHHhCCCeeE--EecCCcC---cc-CCCHHHHHHHHHHHHHHcC-CCCeEEec
Q 016596 297 ALTGVD--VVSLD------WTVDMAEGRRRLGPDVAV--QGNVDPG---AL-FGSKDFITNRINDTVRKAG-RWKHILNL 361 (386)
Q Consensus 297 ~e~g~d--~l~~d------~~~dl~e~~~~~g~~~~l--~G~vd~~---~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~ 361 (386)
.+.+-. .+.+| ...|..+..+.+++++.- +.+.++. .+ .|+-+-=-+.+.+.|+..+ +|.+.+=.
T Consensus 175 ~~v~~~~lgl~~D~~h~~~~~~~~~~~i~~~~~~i~~vHikD~~~~~~~~~~~G~G~id~~~i~~~L~~~gy~g~~~~E~ 254 (283)
T PRK13209 175 HYLNSPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGEGVVDFERCFKTLKQSGYCGPYLIEM 254 (283)
T ss_pred HHhCCCccceEeccchHHHhcCCHHHHHHhCcCcEEEEEeccCCCCCCceeCCCCCccCHHHHHHHHHHcCCCceEEEEe
Confidence 444422 23334 224666666777776443 2222221 12 2332222444556677777 55555543
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhh
Q 016596 362 GHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
-..- ...|.+.++.-++.+++.
T Consensus 255 ~~~~-~~~~~~~~~~~~~~l~~~ 276 (283)
T PRK13209 255 WSET-AEDPAAEVAKARDFVKAR 276 (283)
T ss_pred cCCc-cccHHHHHHHHHHHHHHH
Confidence 3222 234777777777766653
No 390
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=52.72 E-value=3.1e+02 Score=29.03 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecC--C---cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDS--W---ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-------- 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~--~---~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-------- 290 (386)
-++-.+..++.+.++|.+.|=+... + -.+++.+-|+. ++++.+.+. +.++.+++-|..
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~-----lr~l~~~~~----~~~lqml~Rg~n~vg~~~yp 95 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWER-----LRELKKAMP----NTPQQMLLRGQNLLGYRHYA 95 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHH-----HHHHHHhCC----CCeEEEEecCcceeccccCc
Confidence 3444455666777788887644211 1 12566655443 445555443 456666666621
Q ss_pred ---c--hHHHHHhcCCCEEEc-CCCCCHH------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 291 ---G--LLERLALTGVDVVSL-DWTVDMA------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 291 ---~--~l~~l~e~g~d~l~~-d~~~dl~------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
. .++...+.|++++.+ +...|+. +..+..|.. ..|.|.-..- .-|.+.+.+.++++.+.+.+
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~--~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad--- 170 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAH--AQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD--- 170 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCe--EEEEEEEeeCCccCHHHHHHHHHHHHHcCCC---
Confidence 1 145557889999865 4334443 222334542 2233311001 34677777777776654323
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++.. |+......|+.+..+++++++
T Consensus 171 ~i~i-~Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 171 SLCI-KDMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred EEEE-CCCCCCcCHHHHHHHHHHHHH
Confidence 3332 444455667778888888775
No 391
>PRK08999 hypothetical protein; Provisional
Probab=52.51 E-value=2.1e+02 Score=27.09 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.+++.++.|++.|++-+.. .+.+.+.+++ +++.+.++++ ++++++|. .++...++|++++|+.+.
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~---~~~~~~~~~~----~~l~~~~~~~--~~~liind-----~~~la~~~~~~GvHl~~~ 213 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQ---LPPAAYRALA----RAALGLCRRA--GAQLLLNG-----DPELAEDLGADGVHLTSA 213 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCC---CCHHHHHHHH----HHHHHHHHHh--CCEEEEEC-----cHHHHHhcCCCEEEcChh
Confidence 45556678999999987754 4555555544 3344444554 56777774 356667889999988753
Q ss_pred -CCHHHHHHHhCCC
Q 016596 310 -VDMAEGRRRLGPD 322 (386)
Q Consensus 310 -~dl~e~~~~~g~~ 322 (386)
.+..++++ ++.+
T Consensus 214 d~~~~~~r~-~~~~ 226 (312)
T PRK08999 214 QLAALAARP-LPAG 226 (312)
T ss_pred hcChHhhcc-CCCC
Confidence 34444444 5433
No 392
>PLN02411 12-oxophytodienoate reductase
Probab=52.44 E-value=1.2e+02 Score=30.11 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC----CCCH---HHHHHhh------HHHHHHHHHHHHhhCCCCcEEE
Q 016596 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT----ELSP---VDFEEFS------LPYLKQIVDTVKQTHPDLSLIL 284 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~----~iSp---~~f~ef~------~P~~k~l~~~i~~~~~~~~~~~ 284 (386)
.+=++.+.+...+.++...++|.|+|-|.-.-+- |+|| +-=+||. .-+..++++++++.-+.-.+.+
T Consensus 157 ~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgv 236 (391)
T PLN02411 157 TSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGV 236 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEE
Q ss_pred EecC---------------CcchHHHHHhc------CCCEEEcCCCC-------------------CH-HHHHHHhCCCe
Q 016596 285 YASG---------------SGGLLERLALT------GVDVVSLDWTV-------------------DM-AEGRRRLGPDV 323 (386)
Q Consensus 285 H~cG---------------~~~~l~~l~e~------g~d~l~~d~~~-------------------dl-~e~~~~~g~~~ 323 (386)
-+.+ ...+.+.+.++ |+|.+++.... ++ +++|+.++.-+
T Consensus 237 RiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pv 316 (391)
T PLN02411 237 RVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTF 316 (391)
T ss_pred EEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCE
Q ss_pred eEEecCCc
Q 016596 324 AVQGNVDP 331 (386)
Q Consensus 324 ~l~G~vd~ 331 (386)
...|++.+
T Consensus 317 i~~G~i~~ 324 (391)
T PLN02411 317 MCSGGFTR 324 (391)
T ss_pred EEECCCCH
No 393
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.18 E-value=2.1e+02 Score=27.08 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDW 308 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~ 308 (386)
.+++..+.++.+|.- ++|...+-.-.+.+..++..+.+.. ++|+.+|.+-... .+..-.+.|++.+.+|.
T Consensus 34 vi~AAe~~~sPvIl~-------~~~~~~~~~g~~~~~~~~~~~A~~~-~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~Dg 105 (283)
T PRK07998 34 ILNAIERSGLPNFIQ-------IAPTNAQLSGYDYIYEIVKRHADKM-DVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDG 105 (283)
T ss_pred HHHHHHHhCCCEEEE-------CcHhHHhhCCHHHHHHHHHHHHHHC-CCCEEEECcCCCCHHHHHHHHHcCCCEEEEeC
Confidence 334455667777653 2333332222233333333332222 5899999863332 45666788999998874
Q ss_pred C-C----CHH------HHHHHhCCCeeE---EecC----Cc----CccCCCHHHHHHHHHHH-HHHcCCCCeEEecCCCC
Q 016596 309 T-V----DMA------EGRRRLGPDVAV---QGNV----DP----GALFGSKDFITNRINDT-VRKAGRWKHILNLGHGI 365 (386)
Q Consensus 309 ~-~----dl~------e~~~~~g~~~~l---~G~v----d~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc~i 365 (386)
. . +++ +..+.+| +++ .|-| |. ..++-+||++++.+++. ++.+ -.=+++.|++
T Consensus 106 S~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L---AvaiGt~HG~ 180 (283)
T PRK07998 106 AALPFEENIAFTKEAVDFAKSYG--VPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDML---AVSIGNVHGL 180 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC--CEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCee---ehhccccccC
Confidence 3 2 232 2233333 333 2333 11 11256899988877754 1111 1113333444
Q ss_pred C--CCCcHHHHHHHHHH
Q 016596 366 K--VGTPEENVAHFFEV 380 (386)
Q Consensus 366 ~--~~tp~Eni~a~~~a 380 (386)
- |+...|.++.+.++
T Consensus 181 Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 181 EDIPRIDIPLLKRIAEV 197 (283)
T ss_pred CCCCCcCHHHHHHHHhh
Confidence 3 44555666555443
No 394
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=52.15 E-value=2.4e+02 Score=27.73 Aligned_cols=142 Identities=17% Similarity=0.038 Sum_probs=75.5
Q ss_pred HHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCC-CcEEEEecCCcc-h---HHHHHhcCCCEEEc
Q 016596 234 YQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPD-LSLILYASGSGG-L---LERLALTGVDVVSL 306 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~-~~~~~H~cG~~~-~---l~~l~e~g~d~l~~ 306 (386)
.+...|+|.|---+..++ +.+- +|-+. ...+.++.+.+.+++ +++...+.+... . .+...+.|.+++.+
T Consensus 149 ~~~~gGvD~IKdDe~l~~~~~~p~---~eRv~-~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv 224 (364)
T cd08210 149 AFALGGIDIIKDDHGLADQPFAPF---EERVK-ACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLI 224 (364)
T ss_pred HHHhcCCCeeecCccccCccCCCH---HHHHH-HHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 455678887653223443 4443 33332 223333333322222 344555555543 2 35666788877654
Q ss_pred CCC-------------CC--------------------------HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHH
Q 016596 307 DWT-------------VD--------------------------MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347 (386)
Q Consensus 307 d~~-------------~d--------------------------l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~ 347 (386)
+.. .+ +.++.+..|-.+++.+|.-. .+..++|++.+-++.
T Consensus 225 ~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~g-~~~~~~e~~~~ia~~ 303 (364)
T cd08210 225 APGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYGG-RFGFSREECQAIADA 303 (364)
T ss_pred ecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCcC-CccCCHHHHHHHHHH
Confidence 321 12 45555666666666655522 234567776655553
Q ss_pred HHH--------------------------HcCCCCeEEecCCCC--CCCCcHHHHHHHHHHH
Q 016596 348 TVR--------------------------KAGRWKHILNLGHGI--KVGTPEENVAHFFEVA 381 (386)
Q Consensus 348 ~i~--------------------------~~~~~g~Ils~gc~i--~~~tp~Eni~a~~~a~ 381 (386)
+.. .++ ..+|+..|-++ -|+-+.+..+||.+++
T Consensus 304 ~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G-~Dvil~aGGgi~gHp~g~~ag~~a~rqa~ 364 (364)
T cd08210 304 CRRPMGGLKPILPAPGGGMSVERAPEMVELYG-PDVMLLIGGSLLRAGDDLTENTRAFVEAV 364 (364)
T ss_pred hcCCccccCCCcCcCCCCcCHHHHHHHHHHcC-CcEEEEccccccCCCCChHHHHHHHHhhC
Confidence 322 222 34777777777 3666788888887764
No 395
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=52.12 E-value=71 Score=31.97 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE-EecCCc--c--hHHHHHhcCCCEEEcCC-CCCHHHHHHHhC
Q 016596 263 LPYLKQIVDTVKQTHPDLSLIL-YASGSG--G--LLERLALTGVDVVSLDW-TVDMAEGRRRLG 320 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~-H~cG~~--~--~l~~l~e~g~d~l~~d~-~~dl~e~~~~~g 320 (386)
.|++.++++.+++. ++++.+ +++|+. . .++.++++|++-+.++- .+|.+.-++..|
T Consensus 88 ~~~l~eLl~~lk~~--gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G 149 (404)
T TIGR03278 88 YPELEELTKGLSDL--GLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK 149 (404)
T ss_pred CHHHHHHHHHHHhC--CCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC
Confidence 35677889999987 466655 577652 2 37899999999776642 367776666555
No 396
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.09 E-value=50 Score=31.29 Aligned_cols=119 Identities=10% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC-CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL-SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i-Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
.++.+||.+.++++ +.|+|.+-++-.. -+.. .|+. -+.-+++| ++.. ++|+++|-
T Consensus 150 ~~~T~pe~a~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~p~l----~~~~l~~I----~~~~-~vPLVlHG 206 (283)
T PRK07998 150 DCKTEPEKVKDFVE--------------RTGCDMLAVSIGNVHGLEDIPRI----DIPLLKRI----AEVS-PVPLVIHG 206 (283)
T ss_pred cccCCHHHHHHHHH--------------HhCcCeeehhccccccCCCCCCc----CHHHHHHH----HhhC-CCCEEEeC
Confidence 56889987743322 4578865543221 1222 1322 12233444 4333 58999997
Q ss_pred cCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 287 SGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 287 cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
.-... .+...+++|+.-++++...- ...+++.+... -...||..+ ....+.+++.+++.|+.++
T Consensus 207 gSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~g 276 (283)
T PRK07998 207 GSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNN---HNEANLARVMAKAKQAVEEDVYSKIKMMN 276 (283)
T ss_pred CCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 64443 46777889999999875432 23444444221 123666655 5667889999999999887
No 397
>PLN02321 2-isopropylmalate synthase
Probab=52.08 E-value=45 Score=35.40 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.++++++.++|++.|.++|+.+ ...|..+.+++... .+.+... .++++-+|++.+..+ + ..+ .+.|+
T Consensus 240 d~l~~~~~~a~~aGa~~I~L~DTvG-~~~P~~v~~li~~l----~~~~~~~-~~v~i~vH~HND~GlAvANslaAv~AGA 313 (632)
T PLN02321 240 EFLYRILGEVIKAGATTLNIPDTVG-YTLPSEFGQLIADI----KANTPGI-ENVIISTHCQNDLGLSTANTLAGAHAGA 313 (632)
T ss_pred HHHHHHHHHHHHcCCCEEEeccccc-CCCHHHHHHHHHHH----HHhcCCC-CCceEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 5566777888899999999988876 46777766544322 2222211 024578999877652 2 333 46788
Q ss_pred CEEEc-----CC---CCCHHHHHHHh
Q 016596 302 DVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~ 319 (386)
+.++. .+ ..+++++.-.+
T Consensus 314 ~~Vd~TinGlGERaGNa~LEevv~~L 339 (632)
T PLN02321 314 RQVEVTINGIGERAGNASLEEVVMAI 339 (632)
T ss_pred CEEEEecccccccccCccHHHHHHHH
Confidence 87742 22 25676665554
No 398
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=51.98 E-value=1.2e+02 Score=29.33 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHH-------------
Q 016596 161 PYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS------------- 227 (386)
Q Consensus 161 ~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~------------- 227 (386)
..+.++++++.+ .+-+ .+=-+++.|-..+.. .|.+ ..+.++|+.+.++++.+.+.
T Consensus 77 ~~~~~aa~~~~~-~g~d-~IdlN~gCP~~~v~~--~g~G--------s~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 77 KEMADAARINVE-SGAQ-IIDINMGCPAKKVNR--KLAG--------SALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred HHHHHHHHHHHH-CCCC-EEEEeCCCCHHHHcC--CCcc--------cHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 445566666544 3422 233466778643222 1111 35678999999999888643
Q ss_pred ------HHHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHH
Q 016596 228 ------MAKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLA 297 (386)
Q Consensus 228 ------~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~ 297 (386)
..++++.+.++|++.|.+..-. ....+.. .-+.+ +..+++.. ++| +..+|+.. ....+.
T Consensus 145 ~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~----a~~~~----i~~ik~~~-~iP--VI~nGgI~s~~da~~~l 213 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE----AEYDS----IRAVKQKV-SIP--VIANGDITDPLKARAVL 213 (321)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEecCccccccCCC----cChHH----HHHHHHhc-CCc--EEEeCCCCCHHHHHHHH
Confidence 4466777778999999876422 1122221 11333 44444432 456 34566653 244455
Q ss_pred -hcCCCEEEcC
Q 016596 298 -LTGVDVVSLD 307 (386)
Q Consensus 298 -e~g~d~l~~d 307 (386)
+.|+|++.+.
T Consensus 214 ~~~gadgVmiG 224 (321)
T PRK10415 214 DYTGADALMIG 224 (321)
T ss_pred hccCCCEEEEC
Confidence 4799999875
No 399
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.56 E-value=49 Score=31.32 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++..+++|+|.|++ |. |||++-++.+ +.+++ ...+-..|+++ .+..++.+|+|+++..
T Consensus 204 ee~~ea~~~gaDiImL-Dn----~s~e~l~~av--------~~~~~-----~~~leaSGgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 204 DQIEPVLAAGVDTIML-DN----FSLDDLREGV--------ELVDG-----RAIVEASGNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHHhcCCCEEEE-CC----CCHHHHHHHH--------HHhCC-----CeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 4455566789998874 32 6787766544 33443 23677889887 3899999999999875
Q ss_pred C
Q 016596 308 W 308 (386)
Q Consensus 308 ~ 308 (386)
.
T Consensus 266 a 266 (281)
T PRK06543 266 A 266 (281)
T ss_pred c
Confidence 4
No 400
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=51.45 E-value=2.8e+02 Score=28.12 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=37.2
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC---CCCcEEEEecCC-cc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH---PDLSLILYASGS-GG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~---~~~~~~~H~cG~-~~--~l~~l~e~g~d~l~~d 307 (386)
++..|++++...++++++.+++++ +.+++.. .+..+.+-+.+. .+ .++.+.++|++-+++.
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll--------~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiG 169 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLM--------AALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFG 169 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHH--------HHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEEC
Confidence 456677777777789998776654 4443321 122223333333 22 5899999999988764
No 401
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=51.36 E-value=2.3e+02 Score=28.27 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 157 EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 157 ~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
.+|++.+.+++++..++.|..+-...+++++.+ .+ ++.++...
T Consensus 172 ~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~~~---em----------------------------------~~ra~~~~ 214 (391)
T cd08209 172 LERIRACRPVLQEVYEQTGRRTLYAVNLTGPVF---TL----------------------------------KEKARRLV 214 (391)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH---HH----------------------------------HHHHHHHH
Confidence 357788889999999998876655566666521 11 12334566
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----------c-h-HHH-HHhcCCC
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-----------G-L-LER-LALTGVD 302 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-----------~-~-l~~-l~e~g~d 302 (386)
++|++.+++.-.+.++ + .++.+.+. .+. +.|+..|-.+.- . . +-. +.=.|+|
T Consensus 215 ~~G~~~~mv~~~~~G~-~----------~l~~l~~~-~~~--~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD 280 (391)
T cd08209 215 EAGANALLFNVFAYGL-D----------VLEALASD-PEI--NVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGAD 280 (391)
T ss_pred HhCCCEEEEeccccch-H----------HHHHHHhc-CcC--CcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCC
Confidence 7899988764333332 1 12222222 111 456666654421 1 1 222 2335888
Q ss_pred EEEcCCC-----CCHHH---HHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCC
Q 016596 303 VVSLDWT-----VDMAE---GRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVG 368 (386)
Q Consensus 303 ~l~~d~~-----~dl~e---~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~ 368 (386)
.+++... .+-++ +.+.+-.. +.+.+.+- . -++. .+.++++..| .-+|+..|-++ -|+
T Consensus 281 ~~~~~~~~Gk~~~~~~~~~~~~~~~~~~----~~~k~~~Pv~sgG~~~g----~vp~~~~~~G-~Dvi~~~GGGi~gHp~ 351 (391)
T cd08209 281 AVLFPSPYGSVALSKEEALAIAEALRRG----GAFKGVFPVPSAGIHPG----LVPQLLRDFG-TDVILNAGGGIHGHPD 351 (391)
T ss_pred ccccCCccCCcCCCHHHHHHHHHHHhCc----CCCCCceEecCCCCChh----HHHHHHHHhC-CceEEecCcceecCCC
Confidence 8765432 22222 22222111 22444331 1 1122 2345556665 34888888887 468
Q ss_pred CcHHHHHHHHHHHHh
Q 016596 369 TPEENVAHFFEVAKA 383 (386)
Q Consensus 369 tp~Eni~a~~~a~~~ 383 (386)
-+.+..+||.+++..
T Consensus 352 G~~aGa~A~rqA~ea 366 (391)
T cd08209 352 GAAAGVRAFREAIDA 366 (391)
T ss_pred CchhHHHHHHHHHHH
Confidence 889999999888654
No 402
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.97 E-value=1.3e+02 Score=27.29 Aligned_cols=125 Identities=13% Similarity=0.091 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS 305 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~ 305 (386)
....+.+..+.++|+|+|.++=.+++++--.- |++++.+.+.+.. ++|++- .- ...++.+..+|+.-++
T Consensus 54 ~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~-------~d~ei~~~ie~~~-~v~vvT-ts--~Avv~aL~al~a~ri~ 122 (238)
T COG3473 54 SYTERAALELADAGVDVIVYGCTSGSLIGGPG-------YDKEIAQRIEEAK-GVPVVT-TS--TAVVEALNALGAQRIS 122 (238)
T ss_pred HHHHHHHHhcCccccCEEEEeccceeeecCCc-------hhHHHHHHHHhcc-CCceee-ch--HHHHHHHHhhCcceEE
Confidence 44555666677899999998777777443323 3889999999875 667532 21 2247888888988776
Q ss_pred cC-CCCC-H----HHHHHHhCCC---eeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 306 LD-WTVD-M----AEGRRRLGPD---VAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 306 ~d-~~~d-l----~e~~~~~g~~---~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+- +.++ + .+--+.-|=. ..-+|-.|...+ .-+|.++.+-+|+......+ +..+| |.
T Consensus 123 vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~D-aiFiS--CT 188 (238)
T COG3473 123 VLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDAD-AIFIS--CT 188 (238)
T ss_pred EeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCC-eEEEE--ee
Confidence 53 3322 1 1222222211 222343344445 78899999999988754335 44444 65
No 403
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=50.95 E-value=79 Score=33.57 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h---HHHHHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L---LERLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~---l~~l~e~g 300 (386)
.++....++.++++|...+.| -++++.+-|+. -|-++.++++++++.|+-+|++.... - +-..+..|
T Consensus 717 L~YY~nlad~lV~agtHiL~I-KDMAG~lKP~a--------a~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AG 787 (1176)
T KOG0369|consen 717 LDYYLNLADKLVKAGTHILGI-KDMAGVLKPEA--------AKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAG 787 (1176)
T ss_pred HHHHHHHHHHHHhccCeEEee-hhhhcccCHHH--------HHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcC
Confidence 345556667777788877665 44566666654 34567889998899999999887654 2 33445679
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 788 ADVVDv 793 (1176)
T KOG0369|consen 788 ADVVDV 793 (1176)
T ss_pred Cceeee
Confidence 998754
No 404
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=50.79 E-value=1.2e+02 Score=29.72 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=40.9
Q ss_pred hCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEcC
Q 016596 238 NGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSLD 307 (386)
Q Consensus 238 ~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~d 307 (386)
.++|.+.+.-.. -..++|+-.++|- -+.+.++.+.+.. ++|+++..+|... ....+.+.|+|++.+.
T Consensus 147 ~~adal~l~l~~~qe~~~p~g~~~f~--~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 147 IEADALQIHLNPLQELVQPEGDRDFR--GWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred cCCCcEEEeCccchhhcCCCCcccHH--HHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 578887765322 1355665554432 2334455555433 5799999887633 2567788999998774
No 405
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=50.58 E-value=30 Score=32.50 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC--------------CCCCcHHHHHHHHHHHHhhc
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGHGI--------------KVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--------------~~~tp~Eni~a~~~a~~~yg 385 (386)
..|.++.++.++++++..+|-+-++.+|..+ +--|-||-+.|+.+.++++|
T Consensus 10 ~~syk~~r~sv~~~lel~gg~~~~i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g 74 (293)
T COG2006 10 CESYKDTRKSVRTVLELLGGLEAFISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAG 74 (293)
T ss_pred cCCcHHHHHHHHHHHHHccccccccCCCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhC
Confidence 3466799999999999987544445555432 22467999999999999987
No 406
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=50.48 E-value=2.4e+02 Score=27.25 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--hHHHHHhcCCCEE--EcCC
Q 016596 235 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--LLERLALTGVDVV--SLDW 308 (386)
Q Consensus 235 ~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~l~~l~e~g~d~l--~~d~ 308 (386)
+.+.|+..|.+.. .-.++.|+ +.++++.+++. +..+.+.+-|.. + .++.+.+.|++.+ |+|.
T Consensus 49 ~~~~g~~~v~~~G-GEPll~~~---------~~~ii~~~~~~--g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg 115 (358)
T TIGR02109 49 AAELGVLQLHFSG-GEPLARPD---------LVELVAHARRL--GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQG 115 (358)
T ss_pred HHhcCCcEEEEeC-cccccccc---------HHHHHHHHHHc--CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcC
Confidence 3456776666532 11256554 23667777776 456677777863 2 4788889998866 5553
No 407
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.04 E-value=2.1e+02 Score=26.28 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCE---E
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDV---V 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~---l 304 (386)
++++.+.++|++++.+.|- +++ ...++++.++++ |...++-+--++. .++.+.+...+. +
T Consensus 95 ~fi~~~~~aG~~giiipDl-----~~e--------e~~~~~~~~~~~--g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDL-----PPE--------EAEEFREAAKEY--GLDLIFLVAPTTPDERIKKIAELASGFIYYV 159 (242)
T ss_pred HHHHHHHHCCCcEEEECCC-----CHH--------HHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhhCCCCEEEE
Confidence 4566788899999998763 222 456788888987 4554554444443 467777632222 2
Q ss_pred EcCCC--------CC----HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 305 SLDWT--------VD----MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 305 ~~d~~--------~d----l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
+.... .+ ++++|+...-.+.+-|||+ ++|++ +++++. . .|+|++++
T Consensus 160 s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~------~~e~~----~~~~~~-A-DgvVvGSa 217 (242)
T cd04724 160 SRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGIS------TPEQA----AEVAKY-A-DGVIVGSA 217 (242)
T ss_pred eCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCC------CHHHH----HHHHcc-C-CEEEECHH
Confidence 32211 12 3455554444466666664 34444 344443 2 26777653
No 408
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=49.94 E-value=97 Score=29.43 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-c-chHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-G-GLLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~-~~l~~l~e~g~d~l~~d 307 (386)
..+++..+.+..+|. .+|+...+-+...++-.++..+.+.. ++|+.+|.+-. . ..+..-++.|++.+.+|
T Consensus 32 avi~AAe~~~sPvIl-------q~~~~~~~~~~~~~~~~~~~~~a~~~-~vPValHLDH~~~~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 32 AVIEAAEELNSPVIL-------QISPSEVKYMGLEYLAAMVKAAAEEA-SVPVALHLDHGKDFEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHHHHHTTS-EEE-------EEEHHHHHHHHHHHHHHHHHHHHHHS-TSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHHHHhCCCEEE-------EcchhhhhhhhHHHHHHHHHHHHHHc-CCCEEeecccCCCHHHHHHHHHhCccccccc
Confidence 344555667777766 36777777666666666666665554 68999998633 3 24667778899999887
Q ss_pred CC-CCH----H------HHHHHhCCCeeE---EecCC-------c----CccCCCHHHHHHHHHHH-HHHcCCCCeEEec
Q 016596 308 WT-VDM----A------EGRRRLGPDVAV---QGNVD-------P----GALFGSKDFITNRINDT-VRKAGRWKHILNL 361 (386)
Q Consensus 308 ~~-~dl----~------e~~~~~g~~~~l---~G~vd-------~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~ 361 (386)
.. .++ + +..+.+| +.+ .|.|- . ..++.+||++++.+++. ++.+ -.=+++
T Consensus 104 gS~l~~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~L---AvaiGt 178 (287)
T PF01116_consen 104 GSALPFEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDAL---AVAIGT 178 (287)
T ss_dssp -TTS-HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEE---EE-SSS
T ss_pred CCcCCHHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEE---EEecCc
Confidence 54 232 2 2233333 344 22221 1 11357899998888776 2222 112333
Q ss_pred CCCCCC-----CCcHHHHHHHHHHH
Q 016596 362 GHGIKV-----GTPEENVAHFFEVA 381 (386)
Q Consensus 362 gc~i~~-----~tp~Eni~a~~~a~ 381 (386)
.|+.-. ....+.++.+.+++
T Consensus 179 ~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 179 AHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp BSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred cccccCCCCCcccCHHHHHHHHHhc
Confidence 466533 35566666666655
No 409
>PRK07534 methionine synthase I; Validated
Probab=49.93 E-value=2.5e+02 Score=27.25 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ec---CC----cc---hHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-AS---GS----GG---LLE 294 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~c---G~----~~---~l~ 294 (386)
+...+.++.+.+.|+|.+.+ +.. -|-+.- +-+++.+++. +.|+++- +| |. .. .+.
T Consensus 131 ~~~~~qi~~l~~~gvD~l~~-ET~---p~l~E~--------~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~ 196 (336)
T PRK07534 131 EAFHEQAEGLKAGGADVLWV-ETI---SAPEEI--------RAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLAD 196 (336)
T ss_pred HHHHHHHHHHHhCCCCEEEE-ecc---CCHHHH--------HHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHH
Confidence 33345566778899998763 444 232222 2445555554 4676542 23 21 11 234
Q ss_pred HHHhcCC--CEEEcCCCCC---H-HHHHHHhC----CCeeEEecCC-cC-----cc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 295 RLALTGV--DVVSLDWTVD---M-AEGRRRLG----PDVAVQGNVD-PG-----AL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 295 ~l~e~g~--d~l~~d~~~d---l-~e~~~~~g----~~~~l~G~vd-~~-----~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
.+.+++. +++.+.=..+ + ..+.+... .-+.+.-|-. |. .. .++|+...+.+++.++.+ -=
T Consensus 197 ~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~~G---a~ 273 (336)
T PRK07534 197 LVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARDAG---AR 273 (336)
T ss_pred HHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHHcC---Cc
Confidence 4444543 6665542211 3 33333322 1233333321 11 12 478999999998886543 33
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
|++ ||- +|.|+.|+++.++++.+
T Consensus 274 iIG-GCC---GTtP~hI~~la~~l~~~ 296 (336)
T PRK07534 274 IIG-GCC---GTMPEHLAAMRAALDAR 296 (336)
T ss_pred EEe-eec---CCCHHHHHHHHHHHccC
Confidence 565 443 56899999999987653
No 410
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=49.82 E-value=2.8e+02 Score=27.78 Aligned_cols=148 Identities=11% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHhCCCEEEEe-----cCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcE-EEEecCCcc-h---
Q 016596 226 TSMAKY-VQYQADNGAQAVQIF-----DSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSL-ILYASGSGG-L--- 292 (386)
Q Consensus 226 ~~~~~~-~~~~~e~G~d~i~i~-----d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~-~~H~cG~~~-~--- 292 (386)
..+++. ++...+.+...++.+ |..|+ =|.|..|.+|++- +.+.+ |.+. .+-.||+.- .
T Consensus 24 p~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~----iA~~~-----gf~~~~iiLggDHlGPn~W 94 (421)
T PRK15052 24 PLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYG----IADKV-----GFPRERIILGGDHLGPNCW 94 (421)
T ss_pred HHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHH----HHHHc-----CCChhcEEeecCCCCCccc
Q ss_pred ---------------HHHHHhcCCCEEEcCCCCC-------------------HHHHHHHhCCCeeEEecCCcCccCCCH
Q 016596 293 ---------------LERLALTGVDVVSLDWTVD-------------------MAEGRRRLGPDVAVQGNVDPGALFGSK 338 (386)
Q Consensus 293 ---------------l~~l~e~g~d~l~~d~~~d-------------------l~e~~~~~g~~~~l~G~vd~~~l~gt~ 338 (386)
+....+.|++-|++|..++ |.++.+..-.+. |..+|...-||.
T Consensus 95 q~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~---~~~~~vYvIGTE 171 (421)
T PRK15052 95 QQEPADAAMEKSVELVKAYVRAGFSKIHLDASMSCADDPIPLAPETVAERAAVLCQAAESVATDC---QREQLSYVIGTE 171 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHhc---CCCCceEEeccc
Q ss_pred H----------------------HHHHHHHHHHHHcC-CC------CeEEecCCCCC----CCCcHHHHHHHHHHHHhhc
Q 016596 339 D----------------------FITNRINDTVRKAG-RW------KHILNLGHGIK----VGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 339 e----------------------ev~~~v~~~i~~~~-~~------g~Ils~gc~i~----~~tp~Eni~a~~~a~~~yg 385 (386)
+ ...+.-++.++..| .. +++.-||-..- .+-.+|+.+.+...+++|+
T Consensus 172 vP~pGGa~~~~~~~~vT~~e~~~~ti~~h~~af~~~GL~~aw~rvi~vVVQpGvef~~~~V~~y~~~~A~~Ls~~~~~~~ 251 (421)
T PRK15052 172 VPVPGGEASAIQSVHVTRVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALSAWIENTP 251 (421)
T ss_pred cCCCCcchhhccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeeCCCCeeecCHHHHHHHHHHhcCCC
No 411
>PRK04302 triosephosphate isomerase; Provisional
Probab=49.77 E-value=2e+02 Score=25.96 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
++.+.++|++++.+.++-. .+. |+| ..++++.++++ |..++ .+.|+...+..+.+.+.+++.+
T Consensus 78 ~~~l~~~G~~~vii~~ser-~~~---~~e-----~~~~v~~a~~~--Gl~~I-~~v~~~~~~~~~~~~~~~~I~~ 140 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSER-RLT---LAD-----IEAVVERAKKL--GLESV-VCVNNPETSAAAAALGPDYVAV 140 (223)
T ss_pred HHHHHHcCCCEEEEecccc-ccC---HHH-----HHHHHHHHHHC--CCeEE-EEcCCHHHHHHHhcCCCCEEEE
Confidence 5667789999998765421 122 233 56677777876 45544 5667655566677788887754
No 412
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=49.72 E-value=1.3e+02 Score=28.45 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=37.4
Q ss_pred CCceeEEeecCcHHHHH-----HHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q 016596 175 NNEAAVLGFVGAPFTLA-----SYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFD 247 (386)
Q Consensus 175 g~~~~v~~~~~gPft~a-----~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d 247 (386)
|-++||+.++...-+.- ..+.|-..-+.+.+.+....++++ ++-+.-.++..+.++.+++.|+++|.+..
T Consensus 187 gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~---~~~~~gi~~a~~~~~~l~~~G~~giH~~t 261 (281)
T TIGR00677 187 GIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLEPIKDDDE---AVRDYGIELIVEMCQKLLASGIKGLHFYT 261 (281)
T ss_pred CCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHHhccCCHH---HHHHHHHHHHHHHHHHHHHCCCCeeEEec
Confidence 54689887776442222 223322112222222222223333 33344666777777788888999998754
No 413
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=49.60 E-value=2.4e+02 Score=27.00 Aligned_cols=104 Identities=16% Similarity=0.274 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CEEEEec-CCcCCC---CHH-HHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-
Q 016596 221 LRKFTTSMAKYVQYQADNGA--QAVQIFD-SWATEL---SPV-DFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG- 291 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~--d~i~i~d-~~~~~i---Sp~-~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~- 291 (386)
-..+.++....+..+++.|+ |.+++.. ..++|+ ..- .|+++.. -+++-+.++++-.+.+.+++|.- |...
T Consensus 151 k~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~-L~n~g~~avrev~p~ikv~lHla~g~~n~ 229 (403)
T COG3867 151 KKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA-LLNAGIRAVREVSPTIKVALHLAEGENNS 229 (403)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHH-HHHHHhhhhhhcCCCceEEEEecCCCCCc
Confidence 34456666677778888885 5677764 455677 222 5666543 45566677777767788999975 4332
Q ss_pred ----hHHHHHhcC--CCEEEcCCC-----------CCHHHHHHHhCCCeeE
Q 016596 292 ----LLERLALTG--VDVVSLDWT-----------VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 292 ----~l~~l~e~g--~d~l~~d~~-----------~dl~e~~~~~g~~~~l 325 (386)
+++.+-+.+ .|++..... .++..+..++++++.+
T Consensus 230 ~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY~K~VmV 280 (403)
T COG3867 230 LYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRYHKDVMV 280 (403)
T ss_pred hhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHhcCeEEE
Confidence 247776654 567754321 3677888889887555
No 414
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=49.53 E-value=2.4e+02 Score=26.93 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCEEEEecCC-cCCCCHHHH--HHhhHHHHHHHHHHHHhhCC--C--CcEEE-Ee----------cCC-
Q 016596 229 AKYVQYQADNGAQAVQIFDSW-ATELSPVDF--EEFSLPYLKQIVDTVKQTHP--D--LSLIL-YA----------SGS- 289 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f--~ef~~P~~k~l~~~i~~~~~--~--~~~~~-H~----------cG~- 289 (386)
.+.-++++++|||.|.. .++ ++.++-+.| +.-++.-.++-.+-+++.-. + .+.++ =+ -|+
T Consensus 56 ~~IH~aY~eAGADiIeT-NTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~~~ 134 (311)
T COG0646 56 EAIHRAYIEAGADIIET-NTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISPDF 134 (311)
T ss_pred HHHHHHHHhccCcEEEe-cCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCCcc
Confidence 34456789999998873 444 356776666 35555555544433332210 1 12222 11 121
Q ss_pred -cc----------hHHHHHhcCCCEEEcCCCCCHHHHHHH-------h---CCC--eeEEecCCcCc--cC-CCHHHHHH
Q 016596 290 -GG----------LLERLALTGVDVVSLDWTVDMAEGRRR-------L---GPD--VAVQGNVDPGA--LF-GSKDFITN 343 (386)
Q Consensus 290 -~~----------~l~~l~e~g~d~l~~d~~~dl~e~~~~-------~---g~~--~~l~G~vd~~~--l~-gt~eev~~ 343 (386)
.+ .++-|.+-|+|++-++...|+.++|.. + |-+ +.+.|-++.+. |. -++++.-.
T Consensus 135 ~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~ 214 (311)
T COG0646 135 AVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLN 214 (311)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHH
Confidence 11 023345669999988877777655432 2 333 45566676643 34 44555544
Q ss_pred HHHHHHHHcCCCCeEEecCCCCCCC
Q 016596 344 RINDTVRKAGRWKHILNLGHGIKVG 368 (386)
Q Consensus 344 ~v~~~i~~~~~~g~Ils~gc~i~~~ 368 (386)
.++.+ +.++++..|.+-|+
T Consensus 215 ~l~~~------~~~~vGlNCa~Gp~ 233 (311)
T COG0646 215 SLEHL------GPDAVGLNCALGPD 233 (311)
T ss_pred Hhhcc------CCcEEeeccccCHH
Confidence 44322 25666777776543
No 415
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=49.52 E-value=1.6e+02 Score=24.89 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=35.1
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHH-HHhcCCCEEEcCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLER-LALTGVDVVSLDW 308 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~-l~e~g~d~l~~d~ 308 (386)
++...++|+|.|.+....... | + ...++++.+++..++.+ +.+.+.... .-.. +.+.|++.+.++.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~--~----~----~~~~~~~~i~~~~~~~~-v~~~~~~~~~~~~~~~~~~g~d~i~~~~ 144 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL--A----R----EDLELIRELREAVPDVK-VVVKLSPTGELAAAAAEEAGVDEVGLGN 144 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH--H----H----HHHHHHHHHHHhcCCce-EEEEECCCCccchhhHHHcCCCEEEEcC
Confidence 566778999999876543211 1 2 23344555554321334 344443322 2122 5778888886643
No 416
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.44 E-value=2.3e+02 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHHhC-CCEEEEec--C---CcC---CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHHh
Q 016596 232 VQYQADNG-AQAVQIFD--S---WAT---ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLAL 298 (386)
Q Consensus 232 ~~~~~e~G-~d~i~i~d--~---~~~---~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~e 298 (386)
++.+.++| +|+|-+-- | .++ .-+| ....++++.+++.. +.|+.+.+-.+.. ....+.+
T Consensus 110 a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~--------~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 110 AEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP--------ELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred HHHHhccCCcCEEEEECCCCCCCCCccccccCH--------HHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHH
Confidence 44555778 99987632 1 111 1122 35667777777754 5788888765543 2356678
Q ss_pred cCCCEEEc
Q 016596 299 TGVDVVSL 306 (386)
Q Consensus 299 ~g~d~l~~ 306 (386)
.|+|.+.+
T Consensus 181 ~G~d~i~~ 188 (301)
T PRK07259 181 AGADGLSL 188 (301)
T ss_pred cCCCEEEE
Confidence 89998754
No 417
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=49.43 E-value=2.1e+02 Score=28.20 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCcC----CCCHHHHH---------HhhHHHHHHHHHHHHhh-CCCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWAT----ELSPVDFE---------EFSLPYLKQIVDTVKQT-HPDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~----~iSp~~f~---------ef~~P~~k~l~~~i~~~-~~~~~~~~H~ 286 (386)
++.+.+-..+.++...++|.|+|-+.-.-+- |+||..=+ |-=.-+..++++++++. +++.++.+-+
T Consensus 145 I~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRl 224 (370)
T cd02929 145 IKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRF 224 (370)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEe
Q ss_pred cCCc--------------chHHHHHhcCCCEEEcCCCCC------------------HHHHHHHhCCCeeEEecCCcCcc
Q 016596 287 SGSG--------------GLLERLALTGVDVVSLDWTVD------------------MAEGRRRLGPDVAVQGNVDPGAL 334 (386)
Q Consensus 287 cG~~--------------~~l~~l~e~g~d~l~~d~~~d------------------l~e~~~~~g~~~~l~G~vd~~~l 334 (386)
.... .+.+.+.+. +|.+++..... .+++|+.++..+...|++
T Consensus 225 s~~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i----- 298 (370)
T cd02929 225 SVDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRF----- 298 (370)
T ss_pred cHHHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCC-----
Q ss_pred CCCHHHHHHHHHHH-HHHcC-CCCeEEecC
Q 016596 335 FGSKDFITNRINDT-VRKAG-RWKHILNLG 362 (386)
Q Consensus 335 ~gt~eev~~~v~~~-i~~~~-~~g~Ils~g 362 (386)
.++++..+.+++- .+-.+ ++++|-.|.
T Consensus 299 -~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 299 -TSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred -CCHHHHHHHHHcCCCCeeeechHhhhCch
No 418
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=49.32 E-value=1.9e+02 Score=25.72 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=62.0
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhc---CCC-EE-EcCCC
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALT---GVD-VV-SLDWT 309 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~---g~d-~l-~~d~~ 309 (386)
.|+.++-+..+.... + +-.+.++++++.+++. +.++.+|+.+... .+..+.+. +.. ++ +...
T Consensus 114 ~~~~gi~~~~~~~~~--~-----~~~~~~~~~~~~a~~~--~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~- 183 (275)
T cd01292 114 LGAVGLKLAGPYTAT--G-----LSDESLRRVLEEARKL--GLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSH- 183 (275)
T ss_pred cCCeeEeeCCCCCCC--C-----CCcHHHHHHHHHHHHc--CCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCcc-
Confidence 566666544333221 0 2334566677778876 6899999877653 24444443 222 22 3332
Q ss_pred CCHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC--CCCcHHHHHHHHHH
Q 016596 310 VDMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAGRWKHILNLGHGIK--VGTPEENVAHFFEV 380 (386)
Q Consensus 310 ~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~--~~tp~Eni~a~~~a 380 (386)
.+...++......+.+ .+.|... .+....-...++++++. |...++++++... +....+.++.+...
T Consensus 184 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~lgTD~~~~~~~~~~~~~~~~~~~~ 254 (275)
T cd01292 184 LDPELLELLKEAGVSL--EVCPLSNYLLGRDGEGAEALRRLLEL--GIRVTLGTDGPPHPLGTDLLALLRLLLKV 254 (275)
T ss_pred CCHHHHHHHHHcCCeE--EECCcccccccCCcCCcccHHHHHHC--CCcEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 2333333322112222 2333322 21111113334445443 3588899887653 34456666665543
No 419
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=49.16 E-value=77 Score=29.99 Aligned_cols=104 Identities=10% Similarity=0.081 Sum_probs=61.6
Q ss_pred hCCCEEEE--ecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCC--CC
Q 016596 238 NGAQAVQI--FDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWT--VD 311 (386)
Q Consensus 238 ~G~d~i~i--~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~--~d 311 (386)
.|+|.+-+ +-..++. | .-...-...++++.+.+ ++|+++|-.-..+ .+..+.+.|++.+++... .+
T Consensus 165 tg~DyLAvaiG~~hg~~--~-~~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 165 TDVDALAVAIGNAHGMY--N-GDPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred hCCCEEEEccCCCCCCC--C-CCCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHH
Confidence 68998876 2222322 1 00122233344444433 5798888643433 588889999999988643 24
Q ss_pred HHHH-HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 312 MAEG-RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 312 l~e~-~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
+.++ ++.+... . ..|+..+ ....+.+++.+++.|+.++
T Consensus 237 ~~~a~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~i~~~g 276 (281)
T PRK06806 237 VITAVNNLVLNT-P---YSDYFTYHQDVIKAAYENVKKHMQIFG 276 (281)
T ss_pred HHHHHHHHHHhC-C---CCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4333 3333221 1 2666555 6667899999999999886
No 420
>PRK08185 hypothetical protein; Provisional
Probab=48.93 E-value=62 Score=30.67 Aligned_cols=119 Identities=13% Similarity=0.250 Sum_probs=71.6
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCC-C---HHHHHHhhHHHHHHHHHHHHhhCCCCcEE
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATEL-S---PVDFEEFSLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~i-S---p~~f~ef~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
.++.+||.+.++.+. .|+|.+.++-.. .++. + |+ +-+..++++.+.+ ++|++
T Consensus 146 ~~~t~peea~~f~~~--------------TgvD~LAvaiGt~HG~y~~~~kp~----L~~e~l~~I~~~~-----~iPLV 202 (283)
T PRK08185 146 IIYTDPEQAEDFVSR--------------TGVDTLAVAIGTAHGIYPKDKKPE----LQMDLLKEINERV-----DIPLV 202 (283)
T ss_pred ccCCCHHHHHHHHHh--------------hCCCEEEeccCcccCCcCCCCCCC----cCHHHHHHHHHhh-----CCCEE
Confidence 457888877555433 388877764322 2222 1 22 1144455554443 57999
Q ss_pred EEecCCcc--hHHHHHhcCCCEEEcCCCCC---HHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC
Q 016596 284 LYASGSGG--LLERLALTGVDVVSLDWTVD---MAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 284 ~H~cG~~~--~l~~l~e~g~d~l~~d~~~d---l~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~ 353 (386)
+|-.-... .+....++|+.=+|++...- .+.+++.+..+ -+.+|+..+ ....+.+.+.+++.|+.++
T Consensus 203 lHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~i~~~g 275 (283)
T PRK08185 203 LHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDN---PSLYEPNQIYPSAIEAAKEVVRHKMDLFN 275 (283)
T ss_pred EECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99654444 36667788999899875432 23444444221 123666554 5667889999999999887
No 421
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.84 E-value=1.8e+02 Score=27.41 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=49.4
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCcC-----------------CCCHHH
Q 016596 210 AFSQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFDSWAT-----------------ELSPVD 257 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d~~~~-----------------~iSp~~ 257 (386)
+..+|+.+.++++.+.+. ..++++.+.++|+|+|.+.....+ -+|..
T Consensus 138 l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~- 216 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP- 216 (300)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch-
Confidence 445677766666666543 355667777899999987543211 12211
Q ss_pred HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEcC
Q 016596 258 FEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSLD 307 (386)
Q Consensus 258 f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~d 307 (386)
-.+|...+.+..+++.. ++|+ -.+|... ....+.+.|+|.+.+.
T Consensus 217 ---~~~~~~l~~v~~i~~~~-~ipv--i~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 217 ---AIKPIALRMVYDVYKMV-DIPI--IGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ---hhhHHHHHHHHHHHhcC-CCCE--EEECCCCCHHHHHHHHHcCCCceeec
Confidence 12333344555555532 3452 2455543 2445555787776654
No 422
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=48.82 E-value=2.7e+02 Score=27.17 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC---CCCcEEEEecCCc-c--hHHHHHhcCCCEEEcC
Q 016596 240 AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH---PDLSLILYASGSG-G--LLERLALTGVDVVSLD 307 (386)
Q Consensus 240 ~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~---~~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~d 307 (386)
++.|+++....++++++..++++. .+++.. .+..+.+=+.++. + .+..+.++|++-+++.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~--------~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiG 117 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFE--------SIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLG 117 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHH--------HHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEe
Confidence 677888777777899888766543 332211 1233333333332 3 4789999999988663
No 423
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=48.69 E-value=98 Score=29.38 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE--EEecCCcc-h-HHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI--LYASGSGG-L-LERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~--~H~cG~~~-~-l~~l~e~g~ 301 (386)
+-.++-++++.++|||.||+.- .-|+++.+ ++.+.+. .|++ +..-|.+. . ++.+.++|+
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~g----~~~~e~i~--------~~~~~i~-----~Pl~~n~~~~~~~p~~s~~eL~~lGv 223 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPEA----LTSLEEFR--------QFAKAVK-----VPLLANMTEFGKTPLFTADELREAGY 223 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC----CCCHHHHH--------HHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 3455667888999999999732 34555544 3444442 3553 33224433 3 789999999
Q ss_pred CEEEcCC
Q 016596 302 DVVSLDW 308 (386)
Q Consensus 302 d~l~~d~ 308 (386)
..+++..
T Consensus 224 ~~v~~~~ 230 (285)
T TIGR02317 224 KMVIYPV 230 (285)
T ss_pred cEEEEch
Confidence 9988764
No 424
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=48.59 E-value=2e+02 Score=27.24 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=62.5
Q ss_pred HhCCCEEEEecCC--cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC----C
Q 016596 237 DNGAQAVQIFDSW--ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT----V 310 (386)
Q Consensus 237 e~G~d~i~i~d~~--~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~----~ 310 (386)
+.|+..++= ..+ +..=||.-|+-....-=.+++..+++.. |.|++--++.. ..++...++ +|++.+... .
T Consensus 45 ~~g~~~i~k-gsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~-glpvvTeV~~~-~q~~~vae~-~DilQIgAr~~rqt 120 (290)
T PLN03033 45 KLGLPLVFK-SSFDKANRTSSKSFRGPGMAEGLKILEKVKVAY-DLPIVTDVHES-SQCEAVGKV-ADIIQIPAFLCRQT 120 (290)
T ss_pred hCCCcEEEE-eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCceEEeeCCH-HHHHHHHhh-CcEEeeCcHHHHHH
Confidence 458877652 222 2455666776655444456666666665 68877655432 246777777 688877643 3
Q ss_pred CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 311 DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 311 dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
|+-++..+.|+-+. |- ..++.|++|....++++...+
T Consensus 121 dLL~a~~~tgkpV~----lK-kGq~~t~~e~~~aaeki~~~G 157 (290)
T PLN03033 121 DLLVAAAKTGKIIN----IK-KGQFCAPSVMRNSAEKVRLAG 157 (290)
T ss_pred HHHHHHHccCCeEE----eC-CCCCCCHHHHHHHHHHHHHcC
Confidence 54444444443111 11 112688999998888887764
No 425
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=48.49 E-value=79 Score=30.05 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHH-hhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEE-FSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~e-f~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
.+|.+||.+.+++ .+.|+|.+-++-... +....+ -+ +=+.-+++|-+.+ ++|.++|-
T Consensus 155 ~~~T~peea~~Fv--------------~~TgvD~LAvaiGt~HG~y~~~--p~~Ld~~~L~~I~~~v-----~vPLVlHG 213 (288)
T TIGR00167 155 ALYTDPEEAKEFV--------------KLTGVDSLAAAIGNVHGVYKGE--PKGLDFERLEEIQKYV-----NLPLVLHG 213 (288)
T ss_pred ccCCCHHHHHHHH--------------hccCCcEEeeccCccccccCCC--CCccCHHHHHHHHHHh-----CCCEEEeC
Q ss_pred cCCcc--hHHHHHhcCCCEEEcCCCC---CHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCC
Q 016596 287 SGSGG--LLERLALTGVDVVSLDWTV---DMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWK 356 (386)
Q Consensus 287 cG~~~--~l~~l~e~g~d~l~~d~~~---dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g 356 (386)
.-... .+....++|+.=+|++... =...+++.+... -+..||..+ ....+.+++.+++.++.++ .+.
T Consensus 214 gSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 287 (288)
T TIGR00167 214 GSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAEN---KDYYDPRVWLRPGEKAMKEVVLEKIKLFGSANK 287 (288)
T ss_pred CCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 426
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=48.40 E-value=1.8e+02 Score=24.98 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d 307 (386)
..+.++.+.+.|++.+.+-+.. .++..+.++ .+++.+..+.. ++++++|. .++...+.|++.+++.
T Consensus 14 ~~~~l~~l~~~g~~~i~lr~~~---~~~~~~~~~----~~~i~~~~~~~--~~~l~~~~-----~~~~a~~~g~~~vh~~ 79 (196)
T cd00564 14 LLEVVEAALKGGVTLVQLREKD---LSARELLEL----ARALRELCRKY--GVPLIIND-----RVDLALAVGADGVHLG 79 (196)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC---CCHHHHHHH----HHHHHHHHHHh--CCeEEEeC-----hHHHHHHcCCCEEecC
Confidence 4456677888899998875533 234333333 34444444433 45666652 4677788899988876
Q ss_pred CC-CCHHHHHHHh
Q 016596 308 WT-VDMAEGRRRL 319 (386)
Q Consensus 308 ~~-~dl~e~~~~~ 319 (386)
.. .+...+++..
T Consensus 80 ~~~~~~~~~~~~~ 92 (196)
T cd00564 80 QDDLPVAEARALL 92 (196)
T ss_pred cccCCHHHHHHHc
Confidence 42 3344444433
No 427
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=48.37 E-value=1.1e+02 Score=29.00 Aligned_cols=38 Identities=8% Similarity=0.267 Sum_probs=25.6
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEec
Q 016596 210 AFSQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFD 247 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d 247 (386)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+..
T Consensus 138 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 138 FGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEc
Confidence 345677777777766543 23456677788999987654
No 428
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=48.27 E-value=1.6e+02 Score=27.33 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-
Q 016596 213 QPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG- 291 (386)
Q Consensus 213 ~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~- 291 (386)
-|=.+|+++|.+.+.. +.++.+++.|.+.|..+ ++--+ -.=..+.++++++... + ..++=-+|-..
T Consensus 116 ~~vTFHRAfD~~~d~~-~al~~l~~lG~~rILTS---Gg~~~----a~~g~~~L~~lv~~a~----~-~~Im~GgGV~~~ 182 (248)
T PRK11572 116 LAVTFHRAFDMCANPL-NALKQLADLGVARILTS---GQQQD----AEQGLSLIMELIAASD----G-PIIMAGAGVRLS 182 (248)
T ss_pred CceEEechhhccCCHH-HHHHHHHHcCCCEEECC---CCCCC----HHHHHHHHHHHHHhcC----C-CEEEeCCCCCHH
Confidence 4556788888887655 56778889999988743 32222 2234566777776653 2 23444444333
Q ss_pred hHHHHHhcCCCEEEcCCC
Q 016596 292 LLERLALTGVDVVSLDWT 309 (386)
Q Consensus 292 ~l~~l~e~g~d~l~~d~~ 309 (386)
.++.+.++|+.-+|....
T Consensus 183 Nv~~l~~tG~~~~H~s~~ 200 (248)
T PRK11572 183 NLHKFLDAGVREVHSSAG 200 (248)
T ss_pred HHHHHHHcCCCEEeeCCC
Confidence 477778899999987643
No 429
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=47.83 E-value=2.8e+02 Score=27.08 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=57.1
Q ss_pred CCcEEEEecCCc--c--hHHHHHhcC-----------CCEEEcCCC-C----CHHHHHHHh---C-CCeeE---EecC--
Q 016596 279 DLSLILYASGSG--G--LLERLALTG-----------VDVVSLDWT-V----DMAEGRRRL---G-PDVAV---QGNV-- 329 (386)
Q Consensus 279 ~~~~~~H~cG~~--~--~l~~l~e~g-----------~d~l~~d~~-~----dl~e~~~~~---g-~~~~l---~G~v-- 329 (386)
++|+.+|.+-.. . .+...++.| ++.+.+|.. . +++..++.. . ..+.+ .|.|
T Consensus 85 ~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG 164 (340)
T cd00453 85 GVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGG 164 (340)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCC
Confidence 589999986443 2 577788899 888877753 2 343333332 0 12333 2222
Q ss_pred -C-c---C-----ccCCCHHHHHHHHHHHH-----HHcCCCCeEEecCCCCC----CCCcHHHHHHHHHHH
Q 016596 330 -D-P---G-----ALFGSKDFITNRINDTV-----RKAGRWKHILNLGHGIK----VGTPEENVAHFFEVA 381 (386)
Q Consensus 330 -d-~---~-----~l~gt~eev~~~v~~~i-----~~~~~~g~Ils~gc~i~----~~tp~Eni~a~~~a~ 381 (386)
. . . .++-+|||+.+.++++= +.+. .=+++.|++- +...++.++.+-+++
T Consensus 165 ~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LA---vsiGt~HG~Yk~g~p~L~~~~L~~i~~~~ 232 (340)
T cd00453 165 EEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIA---ASFGNVHGVYKKGNVVLTPTILRDSQEYV 232 (340)
T ss_pred ccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEe---eecCccccCCCCCCCccCHHHHHHHHHHH
Confidence 1 1 0 12457999888887652 2221 2234446653 456788887777776
No 430
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=47.35 E-value=2.2e+02 Score=25.85 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHH-HHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcC-CCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPY-LKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTG-VDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~-~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g-~d~l 304 (386)
..+++.+.++|+|.+.+.-... +. .++.++.+++. |..+.+=....+. .+..+.+.+ +|.+
T Consensus 78 ~~~i~~~~~~Gad~itvH~ea~-------------~~~~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFHIEAT-------------EDDPKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred HHHHHHHHHcCCCEEEEeccCC-------------chHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence 3556677789999887632211 12 46678888887 3455555555543 244444322 3322
Q ss_pred ---EcCC----C-------CCHHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC
Q 016596 305 ---SLDW----T-------VDMAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT 369 (386)
Q Consensus 305 ---~~d~----~-------~dl~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t 369 (386)
+++. . ..+.++++.+++ .+.+-|||++. .++.+.+. |-..+|++++= ...+-
T Consensus 143 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~-----------ti~~~~~a-Gad~iVvGsaI-~~a~d 209 (228)
T PTZ00170 143 LVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLE-----------TIDIAADA-GANVIVAGSSI-FKAKD 209 (228)
T ss_pred HhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHH-----------HHHHHHHc-CCCEEEEchHH-hCCCC
Confidence 2221 1 134555555543 46667888662 33333333 32356665441 12234
Q ss_pred cHHHHHHHHHHHHh
Q 016596 370 PEENVAHFFEVAKA 383 (386)
Q Consensus 370 p~Eni~a~~~a~~~ 383 (386)
|.+.++.+.+..++
T Consensus 210 ~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 210 RKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888877765
No 431
>PLN02334 ribulose-phosphate 3-epimerase
Probab=47.34 E-value=1.8e+02 Score=26.36 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCEEEEe
Q 016596 230 KYVQYQADNGAQAVQIF 246 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~ 246 (386)
+.++.+.+.|++.+++-
T Consensus 24 ~~l~~~~~~g~~~ihld 40 (229)
T PLN02334 24 EEAKRVLDAGADWLHVD 40 (229)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 44556778899999974
No 432
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=47.28 E-value=3.2e+02 Score=27.66 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
++++..+++|++.|++-+-. ++.+.+++.+ +++.+..+++ +++++++- .++.-.++|++++|+.+.
T Consensus 221 ~~ve~aL~aGv~~VQLReK~---ls~~el~~la----~~l~~l~~~~--gv~LiIND-----~~dlAl~~gAdGVHLGQe 286 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKD---PQQADLEQQI----IRAIALGREY--NAQVFIND-----YWQLAIKHQAYGVHLGQE 286 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCC---CCHHHHHHHH----HHHHHHHHHh--CCEEEEEC-----HHHHHHHcCCCEEEcChH
Confidence 35778889999999986543 4666665544 4455555554 56766663 356667899999999764
Q ss_pred -CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHH
Q 016596 310 -VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNR 344 (386)
Q Consensus 310 -~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~ 344 (386)
.+..++++.++....| | +.. -+.+|+.+.
T Consensus 287 DL~~~~aR~ilg~~~iI-G-vSt----Hs~eEl~~A 316 (437)
T PRK12290 287 DLEEANLAQLTDAGIRL-G-LST----HGYYELLRI 316 (437)
T ss_pred HcchhhhhhhcCCCCEE-E-Eec----CCHHHHHHH
Confidence 4567778777654333 3 322 455665443
No 433
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=46.99 E-value=2.5e+02 Score=26.39 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=68.5
Q ss_pred CCCEEEEecCCc---CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h-HHHHHh-cCCCEEEcCCCCCH
Q 016596 239 GAQAVQIFDSWA---TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L-LERLAL-TGVDVVSLDWTVDM 312 (386)
Q Consensus 239 G~d~i~i~d~~~---~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~-l~~l~e-~g~d~l~~d~~~dl 312 (386)
..+.|+++|... +--|+ +++..+..++++.+.+. ++..++-.|-..+ . ++.+.+ +.+-++.+- ..+
T Consensus 30 ~e~~iY~~D~a~~PYG~ks~----e~I~~~~~~i~~~l~~~--~ik~lVIACNTASa~al~~LR~~~~iPVvGvi--Pai 101 (269)
T COG0796 30 DEDIIYVGDTARFPYGEKSE----EEIRERTLEIVDFLLER--GIKALVIACNTASAVALEDLREKFDIPVVGVI--PAI 101 (269)
T ss_pred CCcEEEEecCCCCCCCCCCH----HHHHHHHHHHHHHHHHc--CCCEEEEecchHHHHHHHHHHHhCCCCEEEec--cch
Confidence 467899988543 24564 45566677888888887 4678888997765 4 888865 667777776 466
Q ss_pred HHHHHHhCCC-eeEEecCCcCccCCCHHHHH-HHHHHHHHHcCCCCeEEecCCC
Q 016596 313 AEGRRRLGPD-VAVQGNVDPGALFGSKDFIT-NRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 313 ~e~~~~~g~~-~~l~G~vd~~~l~gt~eev~-~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+.+.+...++ +-+ .+|+-.|+ ++.+++|+.....--|-+.||.
T Consensus 102 k~A~~~t~~~~IgV---------iaT~~Tvks~~y~~~i~~~~~~~~V~~la~p 146 (269)
T COG0796 102 KPAVALTRNGRIGV---------IATPATVKSNAYRDLIARFAPDCEVESLACP 146 (269)
T ss_pred HHHHHhccCCeEEE---------EeccchhccHHHHHHHHHhCCCCEEEEecCc
Confidence 6666655443 222 23444443 4556666666544555555664
No 434
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=46.92 E-value=2.3e+02 Score=25.97 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecC-CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCcc-hHHHHHhcC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDS-WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSGG-LLERLALTG 300 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~-~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~~-~l~~l~e~g 300 (386)
.+.+=++...++|++++.++-- ..+-|.- |-+++++++.. +..+.+|- |-+.. -++.+.++|
T Consensus 74 iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~--------~~le~Li~aA~----gL~vTFHrAFD~~~d~~~ale~li~~G 141 (241)
T COG3142 74 IMLEDIRLARELGVQGVVLGALTADGNIDM--------PRLEKLIEAAG----GLGVTFHRAFDECPDPLEALEQLIELG 141 (241)
T ss_pred HHHHHHHHHHHcCCCcEEEeeecCCCccCH--------HHHHHHHHHcc----CCceeeehhhhhcCCHHHHHHHHHHCC
Confidence 3444556788999999987643 2345553 45666777765 45678885 44433 367777777
Q ss_pred CC
Q 016596 301 VD 302 (386)
Q Consensus 301 ~d 302 (386)
+.
T Consensus 142 v~ 143 (241)
T COG3142 142 VE 143 (241)
T ss_pred Cc
Confidence 65
No 435
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=46.66 E-value=1e+02 Score=29.27 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h-HHHHHhcC-CC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L-LERLALTG-VD 302 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~-l~~l~e~g-~d 302 (386)
+-.++-++++.++|||+||+.- ..-|++..+++ .+.+.. -+|+++.. |... . .+.+.++| +.
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~---~~~~~~ei~~~--------~~~~~~---p~pv~~~~-~~~p~~~~~~l~~lg~~~ 230 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHS---RQKTPDEILAF--------VKSWPG---KVPLVLVP-TAYPQLTEADIAALSKVG 230 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecC---CCCCHHHHHHH--------HHhcCC---CCCeEEec-CCCCCCCHHHHHHhcCCc
Confidence 4455667889999999999732 23566665544 344421 13554433 5443 2 56888988 88
Q ss_pred EEEcCC
Q 016596 303 VVSLDW 308 (386)
Q Consensus 303 ~l~~d~ 308 (386)
++++..
T Consensus 231 ~v~~g~ 236 (290)
T TIGR02321 231 IVIYGN 236 (290)
T ss_pred EEEECh
Confidence 887764
No 436
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.42 E-value=1.9e+02 Score=26.68 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHhcCCCEEEcCC--------C---CCHHHHHHHhC-CCeeEEecC-----CcCcc-CCCHHHH---HHHHHHHHHH
Q 016596 293 LERLALTGVDVVSLDW--------T---VDMAEGRRRLG-PDVAVQGNV-----DPGAL-FGSKDFI---TNRINDTVRK 351 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~--------~---~dl~e~~~~~g-~~~~l~G~v-----d~~~l-~gt~eev---~~~v~~~i~~ 351 (386)
++.+.++|++.+.+.. . .+++++++.+. ..+.+.+-. .+..+ .++++.. .+.+++.|+.
T Consensus 19 l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 98 (275)
T PRK09856 19 FRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDM 98 (275)
T ss_pred HHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHH
Confidence 6777788888776521 0 13555555442 124443311 11222 3454432 3455566665
Q ss_pred cC--CCC-eEEecCCCCCCCCcHHHHHHHHHH
Q 016596 352 AG--RWK-HILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 352 ~~--~~g-~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
+. |.. .++.+++.-...++.++.+.+++.
T Consensus 99 a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~ 130 (275)
T PRK09856 99 AKEMNAGYTLISAAHAGYLTPPNVIWGRLAEN 130 (275)
T ss_pred HHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 54 444 455555432234455544443333
No 437
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=46.40 E-value=2.1e+02 Score=28.61 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCH-HHHH
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSK-DFIT 342 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~-eev~ 342 (386)
.+.+.++.+++. +.++..|+-|... .+..+...|+..- ......+++++++...+.+. +. .++. .+++
T Consensus 122 ~l~~~i~~A~~~--g~~v~~Ha~g~~~~~L~a~l~aGi~~d--H~~~~~eea~e~l~~G~~i~--i~----~g~~~~~~~ 191 (422)
T cd01295 122 EMLAKIQAAKKA--GKPVDGHAPGLSGEELNAYMAAGISTD--HEAMTGEEALEKLRLGMYVM--LR----EGSIAKNLE 191 (422)
T ss_pred HHHHHHHHHHhC--CCEEEEeCCCCCHHHHHHHHHcCCCCC--cCCCcHHHHHHHHHCCCEEE--EE----CcccHhhHH
Confidence 445556677776 6899999999874 4655566675431 24467777777764333321 11 1222 2222
Q ss_pred HHHHHHHHHcCCCCeEEecCCC
Q 016596 343 NRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 343 ~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+. .+.+....+..+.+++++.
T Consensus 192 ~~-~~~l~~~~~~~i~l~TD~~ 212 (422)
T cd01295 192 AL-LPAITEKNFRRFMFCTDDV 212 (422)
T ss_pred HH-HHhhhhccCCeEEEEcCCC
Confidence 22 2222221245788999874
No 438
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=45.90 E-value=2.7e+02 Score=26.44 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. .++++ -+.+.++.+.+.+..+- .+|+.+|.+-..+ .+..-++.|++.+.+
T Consensus 33 avi~AAee~~sPvIl~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~---~vPV~lHLDHg~~~e~i~~ai~~GftSVM~ 106 (286)
T PRK08610 33 AILEASQEENAPVILGVSEGAARYMSG---FYTVVKMVEGLMHDLNI---TIPVAIHLDHGSSFEKCKEAIDAGFTSVMI 106 (286)
T ss_pred HHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCC---CCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 334455567778765332221 12221 12245555555444321 2699999864333 466677899999888
Q ss_pred CCC-C----CHHHHH------HHhCCCeeE---EecC----Cc----CccCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-V----DMAEGR------RRLGPDVAV---QGNV----DP----GALFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-~----dl~e~~------~~~g~~~~l---~G~v----d~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. . +++..+ ..+| +.+ .|-| |. ..++-+|||+++.+++. ++.+ -.=+++.|
T Consensus 107 DgS~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~L---AvaiGt~H 181 (286)
T PRK08610 107 DASHSPFEENVATTKKVVEYAHEKG--VSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL---APALGSVH 181 (286)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEE---Eeeccccc
Confidence 754 2 333222 2233 333 2222 11 11257899999988754 2222 12234456
Q ss_pred CCC---CCCcHHHHHHHHHH
Q 016596 364 GIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 364 ~i~---~~tp~Eni~a~~~a 380 (386)
++. |+..++.++.+.++
T Consensus 182 G~Y~~~p~Ld~~~L~~I~~~ 201 (286)
T PRK08610 182 GPYKGEPKLGFKEMEEIGLS 201 (286)
T ss_pred cccCCCCCCCHHHHHHHHHH
Confidence 664 45566666665543
No 439
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.87 E-value=62 Score=30.63 Aligned_cols=60 Identities=30% Similarity=0.446 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDW 308 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~ 308 (386)
.++..+++|+|.|++ |. +||++-++ .++.++.. ..+-..|+.+ .+..++++|+|+++...
T Consensus 206 ea~ea~~~gaDiI~L-Dn----~s~e~l~~--------av~~~~~~-----~~leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLL-DN----MTPDTLRE--------AVAIVAGR-----AITEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEe-CC----CCHHHHHH--------HHHHhCCC-----ceEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 344556789998874 33 57765444 44444432 2377788887 48999999999998754
No 440
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=45.77 E-value=61 Score=32.89 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEcCCCCC--------HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC---CCCeEEec
Q 016596 293 LERLALTGVDVVSLDWTVD--------MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG---RWKHILNL 361 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~~~d--------l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~---~~g~Ils~ 361 (386)
...+.+.|++++.+|...- ++++++.+++-..+.||+ .|+|++++.+.--.+..+ +.|.+..+
T Consensus 229 ~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v------~t~~~a~~l~~aGad~i~vg~g~G~~~~t 302 (450)
T TIGR01302 229 AEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV------ATAEQAKALIDAGADGLRVGIGPGSICTT 302 (450)
T ss_pred HHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC------CCHHHHHHHHHhCCCEEEECCCCCcCCcc
Q ss_pred ----CCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 362 ----GHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 362 ----gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
|++.| ....+..+.+++++++
T Consensus 303 ~~~~~~g~p---~~~~i~~~~~~~~~~~ 327 (450)
T TIGR01302 303 RIVAGVGVP---QITAVYDVAEYAAQSG 327 (450)
T ss_pred ceecCCCcc---HHHHHHHHHHHHhhcC
No 441
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.64 E-value=1.8e+02 Score=29.75 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h--HHHHHhcCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L--LERLALTGV 301 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~--l~~l~e~g~ 301 (386)
.+-..+.++.++++|++.|.+ |..-+- | -+..++++.+|+..++ ..-++||.. . -..+.+.|+
T Consensus 225 ~~~~~~~a~~Lv~aGvd~i~~-D~a~~~-~---------~~~~~~i~~ik~~~p~---~~v~agnv~t~~~a~~l~~aGa 290 (479)
T PRK07807 225 NGDVAAKARALLEAGVDVLVV-DTAHGH-Q---------EKMLEALRAVRALDPG---VPIVAGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred ChhHHHHHHHHHHhCCCEEEE-eccCCc-c---------HHHHHHHHHHHHHCCC---CeEEeeccCCHHHHHHHHHcCC
Confidence 445668888899999999775 533222 2 2445567777776433 455778764 2 577889999
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
|++.
T Consensus 291 d~v~ 294 (479)
T PRK07807 291 DIVK 294 (479)
T ss_pred CEEE
Confidence 9986
No 442
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=45.62 E-value=1.9e+02 Score=26.98 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=53.2
Q ss_pred HhhCHHHHHHHHHHHHHH-----------------HHHHHHHHHHhCCCEEEEecCCcC-----------------CCCH
Q 016596 210 AFSQPKVLHALLRKFTTS-----------------MAKYVQYQADNGAQAVQIFDSWAT-----------------ELSP 255 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~-----------------~~~~~~~~~e~G~d~i~i~d~~~~-----------------~iSp 255 (386)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+.....+ -+|.
T Consensus 143 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg 222 (289)
T cd02810 143 LGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG 222 (289)
T ss_pred cccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc
Confidence 345777777777766653 356777788899999987643221 1222
Q ss_pred HHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 256 VDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 256 ~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
. .+.|...+.+..+++..+ ++| ++-..|-.+ ....+...|++.+.+.
T Consensus 223 ~----~~~~~~~~~v~~i~~~~~~~ip-iia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 223 A----PIRPLALRWVARLAARLQLDIP-IIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred H----HHHHHHHHHHHHHHHhcCCCCC-EEEECCCCCHHHHHHHHHcCccHheEc
Confidence 1 233444555555555321 344 333433333 3556667898887764
No 443
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.56 E-value=2.5e+02 Score=25.89 Aligned_cols=136 Identities=20% Similarity=0.195 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~ 305 (386)
+.++.+.+.|++.+.+.|-.+. .-.+ --+...+++.+.+ +.| +-.+|... .++.+.+.|++.+.
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~~~-----~n~~~i~~i~~~~-----~~p--v~~~GGi~s~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEGRT-----TMIDVVERTAETV-----FIP--LTVGGGIKSIEDVDKLLRAGADKVS 101 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccCh-----hhHHHHHHHHHhc-----CCC--EEEECCCCCHHHHHHHHHcCCCEEE
Confidence 4566667899999999986543 2222 1233444444443 344 33445543 36677788999776
Q ss_pred cCCC--CC---HHHHHHHhC-CCeeEEecCCcC----------c------cCCCHHHHHHHHHHHHHHcCCCCeEEec--
Q 016596 306 LDWT--VD---MAEGRRRLG-PDVAVQGNVDPG----------A------LFGSKDFITNRINDTVRKAGRWKHILNL-- 361 (386)
Q Consensus 306 ~d~~--~d---l~e~~~~~g-~~~~l~G~vd~~----------~------l~gt~eev~~~v~~~i~~~~~~g~Ils~-- 361 (386)
+... .| +.++.+.+| +++++. +|-. . ...+.++..+.++++.+ .+=..++++.
T Consensus 102 vgt~~~~~p~~~~~~~~~~~~~~iv~s--lD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~-~G~~~iivt~i~ 178 (254)
T TIGR00735 102 INTAAVKNPELIYELADRFGSQCIVVA--IDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK-LGAGEILLTSMD 178 (254)
T ss_pred EChhHhhChHHHHHHHHHcCCCCEEEE--EEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH-cCCCEEEEeCcC
Confidence 6532 23 467777887 565543 3310 1 12234555555555543 3323555532
Q ss_pred CCCCCCCCcHHHHHHHHHH
Q 016596 362 GHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a 380 (386)
..+...+...+-++.+.+.
T Consensus 179 ~~g~~~g~~~~~~~~i~~~ 197 (254)
T TIGR00735 179 KDGTKSGYDLELTKAVSEA 197 (254)
T ss_pred cccCCCCCCHHHHHHHHHh
Confidence 1223344555655555543
No 444
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=45.55 E-value=3.2e+02 Score=27.16 Aligned_cols=61 Identities=26% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEec-CCcc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYAS-GSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~d 307 (386)
+++.|++.+...++++++..++++ +.+++..+ +.-+.+-+. ++.+ .+..+.+.|++-+++.
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll--------~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislG 132 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERIL--------TTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLG 132 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHH--------HHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEE
Confidence 567888888888889988776654 33333210 112222222 2233 5889999999988764
No 445
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=45.40 E-value=34 Score=33.85 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 336 GSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 336 gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
-+.+|+++.+.+..+... .--.|++||+....--..|||+.+++.++++|
T Consensus 198 ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~ 248 (475)
T KOG0258|consen 198 LDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEG 248 (475)
T ss_pred CCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcC
Confidence 457888888888886555 45689999988777789999999999999886
No 446
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=45.18 E-value=3e+02 Score=27.17 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCC-eeEEecCCcCccCCCHH
Q 016596 261 FSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPD-VAVQGNVDPGALFGSKD 339 (386)
Q Consensus 261 f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~-~~l~G~vd~~~l~gt~e 339 (386)
|-....+++++.++++ |.++..|.+.....+....+.|+++.. ...+.+.+.+..... ..+.|. |..+.+...
T Consensus 211 ~~~e~i~~~v~~A~~~--g~~v~sH~~~~~~~i~~a~~~Gv~~~e--~~~~~e~~~~~~~~g~~v~~~~--p~~~r~~~~ 284 (383)
T PRK15446 211 YAPPNRRAIAALARAR--GIPLASHDDDTPEHVAEAHALGVAIAE--FPTTLEAARAARALGMSVLMGA--PNVVRGGSH 284 (383)
T ss_pred cCHHHHHHHHHHHHHC--CCceeecCCCCHHHHHHHHHcCCceee--CCCcHHHHHHHHHCCCEEEeCC--cccccCCcc
Confidence 3455688999999997 578777765333457888889998874 345666555543222 233442 323332111
Q ss_pred HHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 340 FITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 340 ev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
.-...++++++. |-...+++++.
T Consensus 285 ~~~~~~~~~~~~--Gv~~~lgSD~~ 307 (383)
T PRK15446 285 SGNVSALDLAAA--GLLDILSSDYY 307 (383)
T ss_pred cchHhHHHHHHC--CCcEEEEcCCC
Confidence 113445555544 23567887763
No 447
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=44.99 E-value=75 Score=30.22 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCC
Q 016596 209 LAFSQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFDSW 249 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d~~ 249 (386)
.+..+||.+.++++.+.+. ..+.++.+.++|+|+|.+....
T Consensus 148 ~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (299)
T cd02940 148 AVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred hhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccc
Confidence 4667899999998888653 3367778889999999876544
No 448
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=44.96 E-value=1.3e+02 Score=25.55 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH----HHHhc
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE----RLALT 299 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~----~l~e~ 299 (386)
+...+.++.+.+.|++.+.+.............. + +++..+.+.. +.|++.|...+.. .+. ...+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~----~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD----K---EVLKEVAAET-DLPLGVQLAINDAAAAVDIAAAAARAA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc----c---cHHHHHHhhc-CCcEEEEEccCCchhhhhHHHHHHHHc
Confidence 3445666777788999988765332211100000 0 2233322222 4677888754432 333 66788
Q ss_pred CCCEEEcCCC
Q 016596 300 GVDVVSLDWT 309 (386)
Q Consensus 300 g~d~l~~d~~ 309 (386)
|+|.+.+...
T Consensus 84 g~d~v~l~~~ 93 (200)
T cd04722 84 GADGVEIHGA 93 (200)
T ss_pred CCCEEEEecc
Confidence 9998876543
No 449
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.88 E-value=2.8e+02 Score=26.32 Aligned_cols=139 Identities=11% Similarity=0.122 Sum_probs=72.0
Q ss_pred HHHHHHHHhCCCEEEEecCC-cCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSW-ATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~-~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~ 305 (386)
..+++..+.++.+|.-..+. ..+ .+.+ .+.++.+.+.+... .++|+.+|.+-..+ .+-..++.|++.+.
T Consensus 33 avi~AAe~~~sPvIiq~~~~~~~~~~~~~----~~~~~~~~~a~~~~---~~VPV~lHLDHg~~~e~i~~ai~~GftSVM 105 (285)
T PRK07709 33 AILAAAEEEKSPVILGVSEGAARHMTGFK----TVVAMVKALIEEMN---ITVPVAIHLDHGSSFEKCKEAIDAGFTSVM 105 (285)
T ss_pred HHHHHHHHHCCCEEEEcCcchhhhcCCHH----HHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 33445556677776533222 223 3322 23455555554331 13799999864333 46677889999998
Q ss_pred cCCC-C----CHHHHHH------HhCCCeeE---EecC----Cc----CccCCCHHHHHHHHHHH-HHHcCCCCeEEecC
Q 016596 306 LDWT-V----DMAEGRR------RLGPDVAV---QGNV----DP----GALFGSKDFITNRINDT-VRKAGRWKHILNLG 362 (386)
Q Consensus 306 ~d~~-~----dl~e~~~------~~g~~~~l---~G~v----d~----~~l~gt~eev~~~v~~~-i~~~~~~g~Ils~g 362 (386)
+|.. . +++..|+ .+| +.+ .|-| |- ..++-+|||+++.+++. ++.+ -.=+++.
T Consensus 106 ~DgS~lp~eeNi~~Trevv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L---AvaiGt~ 180 (285)
T PRK07709 106 IDASHHPFEENVETTKKVVEYAHARN--VSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL---APALGSV 180 (285)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE---EEeeccc
Confidence 8753 2 3333332 233 333 2222 11 11257899998888865 2222 1224445
Q ss_pred CCCC---CCCcHHHHHHHHHH
Q 016596 363 HGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 363 c~i~---~~tp~Eni~a~~~a 380 (386)
|++. |...++.++.+.+.
T Consensus 181 HG~Y~~~p~L~~~~L~~I~~~ 201 (285)
T PRK07709 181 HGPYKGEPNLGFAEMEQVRDF 201 (285)
T ss_pred ccCcCCCCccCHHHHHHHHHH
Confidence 6664 44556666555443
No 450
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=44.68 E-value=1.9e+02 Score=24.29 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=36.9
Q ss_pred HHHHhCCCEEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--hHHHHHhcCCCEEEc
Q 016596 234 YQADNGAQAVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--LLERLALTGVDVVSL 306 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~l~~l~e~g~d~l~~ 306 (386)
.....+...+++.. +. +..+ .+.++++.+++..++..+.+++.|.. . .++.+.++|++.+.+
T Consensus 39 ~~~~~~~~~i~~~g--gep~~~~---------~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i 104 (204)
T cd01335 39 EAKERGVEVVILTG--GEPLLYP---------ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGV 104 (204)
T ss_pred HHHhcCceEEEEeC--CcCCccH---------hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEE
Confidence 34445666666532 22 3333 34455555555422467788888876 3 589999998887654
No 451
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.52 E-value=58 Score=30.98 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=5.2
Q ss_pred HhcCCCEEEcC
Q 016596 297 ALTGVDVVSLD 307 (386)
Q Consensus 297 ~e~g~d~l~~d 307 (386)
++.|+|++-+|
T Consensus 216 l~~gaDiI~LD 226 (289)
T PRK07896 216 LAEGAELVLLD 226 (289)
T ss_pred HHcCCCEEEeC
Confidence 34445555444
No 452
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=44.20 E-value=1.9e+02 Score=27.28 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC------EEEcCCCCCH---HHHHHHhCCCeeEEecCCcCcc
Q 016596 264 PYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD------VVSLDWTVDM---AEGRRRLGPDVAVQGNVDPGAL 334 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d------~l~~d~~~dl---~e~~~~~g~~~~l~G~vd~~~l 334 (386)
.-.+++++.+.++ -.++..||+ ..+++.|.|+. ++++...+.- ..+.-+. -.+.||+.|
T Consensus 141 e~~~~I~~e~q~r----~~lv~l~G~--i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiRa---AliFggv~p--- 208 (287)
T cd01917 141 KALKKIVDDLMGR----GFMLFLCDE--IVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALRA---GLMFGGIEP--- 208 (287)
T ss_pred HHHHHHHHHHHHC----CcEEEEecH--HHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHHH---HHHhCCCCC---
Confidence 3456788888776 257888995 45666665533 3344433221 1111121 245788876
Q ss_pred CCCHHHHHHHHHHHHHHc
Q 016596 335 FGSKDFITNRINDTVRKA 352 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~ 352 (386)
|+-+++.+++++.+..+
T Consensus 209 -Gn~~ei~dY~~nRV~Af 225 (287)
T cd01917 209 -GKREEIRDYQRRRVRAF 225 (287)
T ss_pred -cCHHHHHHHHHhhcCEE
Confidence 78899999998876543
No 453
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=44.15 E-value=2.3e+02 Score=26.91 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-chHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-GLLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~~l~~l~e~g~d~l~~ 306 (386)
..+++..+.++.+|.-..+.. .+.+. +++.+..+.+.+.. .+|+.+|.+ |.. ..+..-++.|++.+.+
T Consensus 33 avi~AAee~~sPvIiq~~~~~~~~~g~----~~~~~~~~~~a~~~-----~VPValHLDH~~~~e~i~~ai~~GftSVMi 103 (284)
T PRK12737 33 VVVETAAELRSPVILAGTPGTFSYAGT----DYIVAIAEVAARKY-----NIPLALHLDHHEDLDDIKKKVRAGIRSVMI 103 (284)
T ss_pred HHHHHHHHhCCCEEEEcCccHHhhCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCeEEe
Confidence 344455567777765322221 12222 23344444433332 589999986 433 2567778889999888
Q ss_pred CCC-C----CHHHH------HHHhCCCeeE---EecCC---cC-------ccCCCHHHHHHHHHHH-HHHcCCCCeEEec
Q 016596 307 DWT-V----DMAEG------RRRLGPDVAV---QGNVD---PG-------ALFGSKDFITNRINDT-VRKAGRWKHILNL 361 (386)
Q Consensus 307 d~~-~----dl~e~------~~~~g~~~~l---~G~vd---~~-------~l~gt~eev~~~v~~~-i~~~~~~g~Ils~ 361 (386)
|.. . +++.. .+.+| +.+ .|.|. -. .++-+||++++.+++. ++.+ -.=+++
T Consensus 104 DgS~lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~L---AvaiGt 178 (284)
T PRK12737 104 DGSHLSFEENIAIVKEVVEFCHRYD--ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSL---AVAIGT 178 (284)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEE---eeccCc
Confidence 754 2 33322 23333 333 23221 11 1256899998888864 1111 122334
Q ss_pred CCCCC---CCCcHHHHHHHHHH
Q 016596 362 GHGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 362 gc~i~---~~tp~Eni~a~~~a 380 (386)
.|++- |...++.++.+-++
T Consensus 179 ~HG~y~~~p~Ld~~~L~~I~~~ 200 (284)
T PRK12737 179 AHGLYKGEPKLDFERLAEIREK 200 (284)
T ss_pred cccccCCCCcCCHHHHHHHHHH
Confidence 45653 34556656555443
No 454
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=1.7e+02 Score=28.61 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-c--hHHHHHhcCCCEE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-G--LLERLALTGVDVV 304 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-~--~l~~l~e~g~d~l 304 (386)
..++++.+.+.|+|+|.+.|+. ++..+++.+|+.++.+=+--+. + -+..+.+.|+..+
T Consensus 81 ~~~~l~~l~e~GvDaviv~Dpg-------------------~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 81 LERYLDRLVELGVDAVIVADPG-------------------LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred HHHHHHHHHHcCCCEEEEcCHH-------------------HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE
Confidence 4566777889999999988875 3556666655566433222233 2 3788899997666
Q ss_pred EcCCCCCHHHHHHHhCCC------eeEEecCCc
Q 016596 305 SLDWTVDMAEGRRRLGPD------VAVQGNVDP 331 (386)
Q Consensus 305 ~~d~~~dl~e~~~~~g~~------~~l~G~vd~ 331 (386)
-+.-..++.++++..... +.+.|.+..
T Consensus 142 Vl~rEls~~ei~~i~~~~~~veiEvfVhGalci 174 (347)
T COG0826 142 VLPRELSLEEIKEIKEQTPDVEIEVFVHGALCI 174 (347)
T ss_pred EeCccCCHHHHHHHHHhCCCceEEEEEecchhh
Confidence 555455555555544322 556777653
No 455
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.90 E-value=2.7e+02 Score=28.81 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCEEEEecCC---cCCCCHHHHHHhh-HHHHHHHHHHHHhhCCCCcEEEEecCCc---chHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSW---ATELSPVDFEEFS-LPYLKQIVDTVKQTHPDLSLILYASGSG---GLLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~---~~~iSp~~f~ef~-~P~~k~l~~~i~~~~~~~~~~~H~cG~~---~~l~~l~e~g~ 301 (386)
.+..+.+.+.+...+-+.|.. -++++.+...+.- .|.. ..+.. +-..+.=..|.. ...+.+.+.|+
T Consensus 183 ~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a--~~d~~-----grL~V~~av~~~~~~~ra~~Lv~aGv 255 (502)
T PRK07107 183 KEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLE--LLDSS-----KRYVVGAGINTRDYAERVPALVEAGA 255 (502)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhh--hhhhc-----cCeeeeeccChhhHHHHHHHHHHhCC
Confidence 344455667788888777743 3578887776532 2322 22322 112222222321 24688889999
Q ss_pred CEEEcCCC--C------CHHHHHHHhCCCe-eEEecCCcCccCCCHHHHHHHH
Q 016596 302 DVVSLDWT--V------DMAEGRRRLGPDV-AVQGNVDPGALFGSKDFITNRI 345 (386)
Q Consensus 302 d~l~~d~~--~------dl~e~~~~~g~~~-~l~G~vd~~~l~gt~eev~~~v 345 (386)
|++.+|.. . .++++++.+++++ .+.||| .|+|++++.+
T Consensus 256 d~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV------~t~e~a~~li 302 (502)
T PRK07107 256 DVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV------VDREGFRYLA 302 (502)
T ss_pred CeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc------cCHHHHHHHH
Confidence 99977632 1 4788888888644 557777 4555544433
No 456
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=43.89 E-value=3.3e+02 Score=26.80 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCcEEEEecCCcc----hHHHHHhcC-----------CCEEEcCCC-C----CHHHHHHHhC----CCeeE------Eec
Q 016596 279 DLSLILYASGSGG----LLERLALTG-----------VDVVSLDWT-V----DMAEGRRRLG----PDVAV------QGN 328 (386)
Q Consensus 279 ~~~~~~H~cG~~~----~l~~l~e~g-----------~d~l~~d~~-~----dl~e~~~~~g----~~~~l------~G~ 328 (386)
.+|+.+|.+-..+ ++...++.| ++.+.+|.. . +++..++... ..+++ +|+
T Consensus 99 ~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG 178 (357)
T TIGR01520 99 GVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGG 178 (357)
T ss_pred CCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 5899999863322 256566665 787777643 2 3333333221 11233 122
Q ss_pred C-Cc----C----ccCCCHHHHHHHHHHH-----HHHcCCCCeEEecCCCCC----CCCcHHHHHHHHHH
Q 016596 329 V-DP----G----ALFGSKDFITNRINDT-----VRKAGRWKHILNLGHGIK----VGTPEENVAHFFEV 380 (386)
Q Consensus 329 v-d~----~----~l~gt~eev~~~v~~~-----i~~~~~~g~Ils~gc~i~----~~tp~Eni~a~~~a 380 (386)
. |. . .++-+||++++.+++. ++.+ -.-+++.|++- |...++.++.+-+.
T Consensus 179 ~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~L---AvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~ 245 (357)
T TIGR01520 179 EEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSI---AAAFGNVHGVYKPGNVKLTPDILADGQEY 245 (357)
T ss_pred ccCCcccccccccccCCCHHHHHHHHHHhccCCCccee---eeeeccccCCcCCCCCccCHHHHHHHHHH
Confidence 2 11 1 1256899999999876 2443 23355667764 34566666666433
No 457
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=43.77 E-value=7.6 Score=38.45 Aligned_cols=59 Identities=12% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASG 288 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG 288 (386)
.+...++++..+|+++|.+--=|+- --+| .+|-|-+++++++.+++.|-.+- ..+|-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p---~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~cG 79 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGP---QQYDWSGYRELFEMVRDAGLKLQVVMSFHQCG 79 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSST---TB---HHHHHHHHHHHHTT-EEEEEEE-S-BS
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCC---CccCcHHHHHHHHHHHHcCCeEEEEEeeecCC
Confidence 4445667788899999986322331 2234 56789999999999999842221 2358896
No 458
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=43.59 E-value=2.7e+02 Score=25.86 Aligned_cols=119 Identities=21% Similarity=0.094 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCC------------CHH----HHHHHhCCCe
Q 016596 262 SLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTV------------DMA----EGRRRLGPDV 323 (386)
Q Consensus 262 ~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~------------dl~----e~~~~~g~~~ 323 (386)
-.++..+++..+++. |.++.++++|... .++.+.++ +|.+.+|-+. +.+ .++......+
T Consensus 97 q~e~~~~~~~~ake~--Gl~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~ 173 (260)
T COG1180 97 QAEFALDLLRAAKER--GLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGV 173 (260)
T ss_pred hHHHHHHHHHHHHHC--CCcEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCC
Confidence 345667778888887 6899999999876 35677777 6777665331 111 1111111111
Q ss_pred eEEe--cCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-----CCCCcHHHHHHHHHHHHhh
Q 016596 324 AVQG--NVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-----KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 324 ~l~G--~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-----~~~tp~Eni~a~~~a~~~y 384 (386)
.+.= -+-|. ...+.|++++-++.+-+......+-+.+=|.. .+-++.+.+....+.++++
T Consensus 174 ~ve~r~lviPg-~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 174 HVEIRTLVIPG-YNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred eEEEEEEEECC-CCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhhhHHH
Confidence 1110 00010 13678888888777766322456666665542 3567888888877777765
No 459
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.57 E-value=2.4e+02 Score=25.13 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=57.5
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC--
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT-- 309 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~-- 309 (386)
++.+.++|+|++.+.... ++++..++ +++.++.. |..+ +-.|-++.-+....+.|++.+.+...
T Consensus 87 v~~~~~~Gad~v~l~~~~---~~~~~~~~--------~~~~~~~~--g~~~-~v~v~~~~e~~~~~~~g~~~i~~t~~~~ 152 (217)
T cd00331 87 IYEARAAGADAVLLIVAA---LDDEQLKE--------LYELAREL--GMEV-LVEVHDEEELERALALGAKIIGINNRDL 152 (217)
T ss_pred HHHHHHcCCCEEEEeecc---CCHHHHHH--------HHHHHHHc--CCeE-EEEECCHHHHHHHHHcCCCEEEEeCCCc
Confidence 667789999999864332 44443333 34444554 3333 22333444467778889998865421
Q ss_pred ----CCH---HHHHHHhC-C-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 310 ----VDM---AEGRRRLG-P-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 310 ----~dl---~e~~~~~g-~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
.++ .++++.++ + .++..||| .|+|+++ ++++. |-.|++++++
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~pvia~gGI------~s~edi~----~~~~~-Ga~gvivGsa 203 (217)
T cd00331 153 KTFEVDLNTTERLAPLIPKDVILVSESGI------STPEDVK----RLAEA-GADAVLIGES 203 (217)
T ss_pred cccCcCHHHHHHHHHhCCCCCEEEEEcCC------CCHHHHH----HHHHc-CCCEEEECHH
Confidence 343 45555542 2 23335666 3566655 34433 3346777654
No 460
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.57 E-value=2.6e+02 Score=25.59 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDV 303 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~ 303 (386)
.-..++++.+.++|++++.+.|--. +..+ ..+++++.++++ |...++-..-.+. .++.+.+..-.+
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~-----e~~~-----~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l~~~~~~~~~~ 155 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLI-----DYPD-----DLEKYVEIIKNK--GLKPVFFTSPKFPDLLIHRLSKLSPLF 155 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCC-----CcHH-----HHHHHHHHHHHc--CCCEEEEECCCCCHHHHHHHHHhCCCE
Confidence 3456789999999999999865311 1111 356788889987 4555554444443 466666553333
Q ss_pred E--EcCCC------C----CHHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 304 V--SLDWT------V----DMAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 304 l--~~d~~------~----dl~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
+ ++... . -+.++|+...+ .+.+-|||. |+|++ +++++.+ -.++|++++
T Consensus 156 l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~------~~e~i----~~~~~~g-aD~vvvGSa 216 (244)
T PRK13125 156 IYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD------SPEDA----RDALSAG-ADGVVVGTA 216 (244)
T ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC------CHHHH----HHHHHcC-CCEEEECHH
Confidence 3 43222 1 23455665532 244555562 34544 4444443 337887765
No 461
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=43.50 E-value=97 Score=29.75 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
.++.+||.+.++++.. |+|.+-++-... +...++-=-++-++-+++|-+.+ ++|.++|-.
T Consensus 152 ~~~TdPeeA~~Fv~~T--------------gvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~-----~iPLVLHGg 212 (307)
T PRK05835 152 AVLVNPKEAEQFVKES--------------QVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT-----NIPLVLHGA 212 (307)
T ss_pred ccCCCHHHHHHHHHhh--------------CCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh-----CCCEEEeCC
Q ss_pred CCcc-----------------------hHHHHHhcCCCEEEcCCCCCH---HHHHHHhCCCeeEEecCCcCcc-CCCHHH
Q 016596 288 GSGG-----------------------LLERLALTGVDVVSLDWTVDM---AEGRRRLGPDVAVQGNVDPGAL-FGSKDF 340 (386)
Q Consensus 288 G~~~-----------------------~l~~l~e~g~d~l~~d~~~dl---~e~~~~~g~~~~l~G~vd~~~l-~gt~ee 340 (386)
-... .+....++|+.=+|++..... ..+++.+... -..+||..+ ....+.
T Consensus 213 SGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~ 289 (307)
T PRK05835 213 SAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANED---KSQFDLRKFFSPAQLA 289 (307)
T ss_pred CCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhC---CccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHcCCCCeE
Q 016596 341 ITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 341 v~~~v~~~i~~~~~~g~I 358 (386)
+++.+++.|+.++..|-|
T Consensus 290 ~~~~v~~~i~~~gs~~k~ 307 (307)
T PRK05835 290 LKNVVKERMKLLGSANKI 307 (307)
T ss_pred HHHHHHHHHHHhCCCCCC
No 462
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.21 E-value=2.8e+02 Score=25.86 Aligned_cols=110 Identities=13% Similarity=0.187 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEec-CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH-HHHHhcCCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFD-SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTGVD 302 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d-~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l-~~l~e~g~d 302 (386)
.+.+.+.++.+.+.|+..+.+.. +..++--|+.=-++...-.++.+....+.. .+-+..+|+...| +.+.+.
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~---~irv~~iG~~~~lp~~~~~~--- 130 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDG---RWRVRHVGSLDLLPAPSANR--- 130 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHHHHHhC---CeEEEEECChhhCCHHHHHH---
Confidence 34444555567788999887654 333333443323333333333333332221 3567888987754 333321
Q ss_pred EEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcC
Q 016596 303 VVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 303 ~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~ 353 (386)
+.++.+...+. .++--. .+ +|+.+||.+.++++++...
T Consensus 131 ---------~~~~e~~T~~~----~~~~Lnia~~Yggr~EI~~A~~~~~~~~~ 170 (256)
T PRK14828 131 ---------LKEAEEATVGN----DGIKVNVAVGYGGRQEIVDAVRSLLTEHK 170 (256)
T ss_pred ---------HHHHHHhhcCC----CCcEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 11222221110 111111 13 6888888888888877654
No 463
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.79 E-value=2e+02 Score=28.02 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred hCHHHHHHHHHHHHHHHH----------------------HHHHHHHHhCCCEEEEecCC--------------cCCCCH
Q 016596 212 SQPKVLHALLRKFTTSMA----------------------KYVQYQADNGAQAVQIFDSW--------------ATELSP 255 (386)
Q Consensus 212 ~~Pe~v~~ll~~~~~~~~----------------------~~~~~~~e~G~d~i~i~d~~--------------~~~iSp 255 (386)
++|+.+.++++.+.+... +.++++.++|+|+|.+.... .+-+|-
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG 268 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG 268 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc
Q ss_pred HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 256 ~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..-....+.+.+++.+.+.. ++| ++-+-|-.+ ....+...|++.+.+
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~---~ip-Iig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGG---RLP-IIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCC-EEEECCCCCHHHHHHHHHcCCCHHHH
No 464
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.78 E-value=1.9e+02 Score=23.86 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC-cEEEEecCC--------cchHHHHHhcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL-SLILYASGS--------GGLLERLALTG 300 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~-~~~~H~cG~--------~~~l~~l~e~g 300 (386)
+++++..+.++|.|.++.-+++-+ +..+++++.++++ +. .+.+-.-|. ....+.+.++|
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~----------~~~~~~~~~l~~~--gl~~v~vivGG~~~i~~~d~~~~~~~L~~~G 108 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGE----------IDCKGLREKCDEA--GLKDILLYVGGNLVVGKQDFEDVEKRFKEMG 108 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCH----------HHHHHHHHHHHHC--CCCCCeEEEECCCCCChhhhHHHHHHHHHcC
Q ss_pred CCEEEcCCCCCHHHHHHHhCC
Q 016596 301 VDVVSLDWTVDMAEGRRRLGP 321 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~g~ 321 (386)
++.+ +.+..++.++.+.+.+
T Consensus 109 v~~v-f~pgt~~~~i~~~l~~ 128 (128)
T cd02072 109 FDRV-FAPGTPPEEAIADLKK 128 (128)
T ss_pred CCEE-ECcCCCHHHHHHHHhC
No 465
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=42.59 E-value=2.9e+02 Score=25.86 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.+.++.+++.|+++|++..+.+. .+|.+..++.+.-. ++.. + .++.|+.+... -+ ....+.|
T Consensus 22 ~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~----~~~~-----~-~vi~gvg~~~~~~ai~~a~~a~~~G 91 (279)
T cd00953 22 FKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAY----SDIT-----D-KVIFQVGSLNLEESIELARAAKSFG 91 (279)
T ss_pred HHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHH----HHHc-----C-CEEEEeCcCCHHHHHHHHHHHHHcC
Confidence 334555677899999999887764 78988877765433 2222 1 25677654432 12 4456789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 92 ad~v~v 97 (279)
T cd00953 92 IYAIAS 97 (279)
T ss_pred CCEEEE
Confidence 997754
No 466
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=42.39 E-value=1.1e+02 Score=29.94 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~ 306 (386)
+.+++++++|+|.|++--..+ -|. ++.. .++.+++.++..+++ .||.. -..+|.+.|+|++-+
T Consensus 111 er~~~L~~agvD~ivID~a~g--~s~-----~~~~----~ik~ik~~~~~~~vi---aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVIDSAHG--HSE-----HVID----MIKKIKKKFPDVPVI---AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp HHHHHHHHTT-SEEEEE-SST--TSH-----HHHH----HHHHHHHHSTTSEEE---EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHcCCCEEEccccCc--cHH-----HHHH----HHHHHHHhCCCceEE---ecccCCHHHHHHHHHcCCCEEEE
Confidence 455677889999988632222 222 2222 344555554445554 56642 367899999999855
Q ss_pred C
Q 016596 307 D 307 (386)
Q Consensus 307 d 307 (386)
.
T Consensus 177 G 177 (352)
T PF00478_consen 177 G 177 (352)
T ss_dssp S
T ss_pred e
Confidence 3
No 467
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.35 E-value=1.1e+02 Score=25.77 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=36.7
Q ss_pred HHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC---ccCCCHHHHHHHHHHHHHHcC
Q 016596 294 ERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG---ALFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 294 ~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~---~l~gt~eev~~~v~~~i~~~~ 353 (386)
..|.+.|+++++........|+.+.- +...+|.. .+.|.-.+...++.+.+++.|
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA-----~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAA-----VEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHH-----HhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 67788999999887666666666543 22344443 245666777777777777766
No 468
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=42.26 E-value=1.7e+02 Score=26.61 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.++.+.++|+|.+.+ |-..+-+.|.. .|.. ++++.+++.++++++-+|.--+.. .++.+.+.|+|.+.+.
T Consensus 23 ~~~~~l~~~~~~~~H~-DimDg~fvpn~--~~G~----~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 23 DEAQDVLSGGADWLHV-DVMDGHFVPNL--SFGP----PVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred HHHHHHHHcCCCEEEE-ecccCccCCCc--CcCH----HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 4455667789998875 42222222221 1121 334555554435677778775554 4688888888887664
No 469
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=42.15 E-value=2.3e+02 Score=27.98 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHhCCCEEEEecCCcC--CCCH-HHHHHhhHHHHHHHHHHHHhhC
Q 016596 213 QPKVLHALLRKFTT------------SMAKYVQYQADNGAQAVQIFDSWAT--ELSP-VDFEEFSLPYLKQIVDTVKQTH 277 (386)
Q Consensus 213 ~Pe~v~~ll~~~~~------------~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp-~~f~ef~~P~~k~l~~~i~~~~ 277 (386)
+|+.+.+.++.+.+ ...++++.++++|+|.|.+.....+ ..|. ..+. .+.+.+++.
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~--------~l~~~i~~~- 187 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPL--------NLKEFIGEL- 187 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHH--------HHHHHHHHC-
Confidence 56766666666654 4668888999999999988643311 1111 1111 233333443
Q ss_pred CCCcEEEEecCCcc---hHHHHHhcCCCEEE
Q 016596 278 PDLSLILYASGSGG---LLERLALTGVDVVS 305 (386)
Q Consensus 278 ~~~~~~~H~cG~~~---~l~~l~e~g~d~l~ 305 (386)
++|++. |+.. ....+.++|+|++.
T Consensus 188 -~IPVI~---G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 188 -DVPVIA---GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred -CCCEEE---eCCCCHHHHHHHHHcCCCEEE
Confidence 578653 4432 34455569999875
No 470
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.97 E-value=78 Score=30.39 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=43.3
Q ss_pred HHHHHHHHH------hCCCEEEEecCCc-----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHH
Q 016596 229 AKYVQYQAD------NGAQAVQIFDSWA-----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLER 295 (386)
Q Consensus 229 ~~~~~~~~e------~G~d~i~i~d~~~-----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~ 295 (386)
.+.++..++ +|+|.|++ |.+- .--||++-++. ++.+++ .+.+=..|+++ .+..
T Consensus 213 leea~ea~~~~~~~~agaDiImL-Dnm~~~~~~~~~~~e~l~~a--------v~~~~~-----~~~lEaSGGIt~~ni~~ 278 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVML-DNMVVPLENGDVDVSMLKEA--------VELING-----RFETEASGNVTLDTVHK 278 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEEe-CCCcccccccCCCHHHHHHH--------HHhhCC-----CceEEEECCCCHHHHHH
Confidence 345556678 99999884 5430 12367665554 333432 13477788887 3899
Q ss_pred HHhcCCCEEEcCC
Q 016596 296 LALTGVDVVSLDW 308 (386)
Q Consensus 296 l~e~g~d~l~~d~ 308 (386)
++.+|+|+++...
T Consensus 279 yA~tGVD~Is~Ga 291 (308)
T PLN02716 279 IGQTGVTYISSGA 291 (308)
T ss_pred HHHcCCCEEEeCc
Confidence 9999999998764
No 471
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.94 E-value=1.4e+02 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCcc------hHHHHHhcCCCEEEcC
Q 016596 266 LKQIVDTVKQTHPDLSLILYASGSGG------LLERLALTGVDVVSLD 307 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l~e~g~d~l~~d 307 (386)
+.+.++.++..+.+..+-+-++|+-. .+..+.+.|+|++.+.
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELG 51 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELG 51 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEec
Confidence 44556666655434677788889832 2456678899999763
No 472
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=41.37 E-value=4.6e+02 Score=27.80 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=21.3
Q ss_pred CeEEecCCCCCCC-CcHHHHHHHHHHHHh
Q 016596 356 KHILNLGHGIKVG-TPEENVAHFFEVAKA 383 (386)
Q Consensus 356 g~Ils~gc~i~~~-tp~Eni~a~~~a~~~ 383 (386)
|.=+++|-+..++ -.++.|+++++++++
T Consensus 186 gVDvsSGvE~~pG~KD~~ki~~fi~~~k~ 214 (610)
T PRK13803 186 GIDVSSGFEDSPGNKKLTLLKSFITNVKK 214 (610)
T ss_pred EEEccCcccCCCCCcCHHHHHHHHHHHHH
Confidence 5557777776554 588999999999886
No 473
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=41.35 E-value=3.5e+02 Score=26.48 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHhhCCCCcEEEEec-CCc--c-hHHHHHhcC-----------CCEEEcCCC-C----CHHHHHH----
Q 016596 262 SLPYLKQIVDTVKQTHPDLSLILYAS-GSG--G-LLERLALTG-----------VDVVSLDWT-V----DMAEGRR---- 317 (386)
Q Consensus 262 ~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~--~-~l~~l~e~g-----------~d~l~~d~~-~----dl~e~~~---- 317 (386)
+.++.+.+.+.. .+|+.+|.+ |.. . .+...++.| ++.+.+|.. . +++..++
T Consensus 80 ~~~~v~~~A~~~-----~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~ 154 (350)
T PRK09197 80 GAKHVHEVAEHY-----GVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLER 154 (350)
T ss_pred HHHHHHHHHHHC-----CCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHH
Confidence 344444444433 589999986 433 1 345556666 787777643 2 3333333
Q ss_pred --HhCCCeeE---EecC----Cc-------C-ccCCCHHHHHHHHHHHH-----HHcCCCCeEEecCCCCC----CCCcH
Q 016596 318 --RLGPDVAV---QGNV----DP-------G-ALFGSKDFITNRINDTV-----RKAGRWKHILNLGHGIK----VGTPE 371 (386)
Q Consensus 318 --~~g~~~~l---~G~v----d~-------~-~l~gt~eev~~~v~~~i-----~~~~~~g~Ils~gc~i~----~~tp~ 371 (386)
..| +++ .|-| |. . .++-+|||+++.|++.= +.+ -.-+++.|++. |...+
T Consensus 155 Ah~~G--vsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~L---AvaiGt~HG~Yk~~~p~Ld~ 229 (350)
T PRK09197 155 MAKAG--MTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTI---AASFGNVHGVYKPGNVKLRP 229 (350)
T ss_pred HHHcC--CEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEE---eeecccccCCcCCCCCccCH
Confidence 223 232 1222 11 0 22678999999888752 222 12244456654 34577
Q ss_pred HHHHHHHHHH
Q 016596 372 ENVAHFFEVA 381 (386)
Q Consensus 372 Eni~a~~~a~ 381 (386)
+.++.+-+++
T Consensus 230 e~L~~I~~~v 239 (350)
T PRK09197 230 EILKDSQEYV 239 (350)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 474
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.27 E-value=3e+02 Score=25.63 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-CCcCCCCHHHHH----HhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH-HHHHhc
Q 016596 226 TSMAKYVQYQADNGAQAVQIFD-SWATELSPVDFE----EFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALT 299 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d-~~~~~iSp~~f~----ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l-~~l~e~ 299 (386)
+.+.+.++.+.+.|+..+.+.. +..++=.|+.=- +++..++++..+.+++. + +-++..|+...| +.+.+
T Consensus 45 ~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~--~--irv~viG~~~~Lp~~~~~- 119 (253)
T PRK14836 45 RAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRN--G--IRVRFIGDRSRLSPKLQE- 119 (253)
T ss_pred HHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHC--C--CEEEEEeccccCCHHHHH-
Confidence 3444555566778999877654 222232332211 23444445556667665 3 468888998754 44443
Q ss_pred CCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcC
Q 016596 300 GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 300 g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~ 353 (386)
.+.++.+...+. .++--. .+ +|+.+||.+.++++.+...
T Consensus 120 -----------~i~~~e~~T~~n----~~~~Lnla~~YggR~EI~~A~k~l~~~~~ 160 (253)
T PRK14836 120 -----------RMEYAERLTASN----TRLILSLAVSYGGRWDIVTAARALAREVA 160 (253)
T ss_pred -----------HHHHHHHHhccC----CceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 233333333221 011111 13 6888888888888887654
No 475
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=41.21 E-value=73 Score=31.69 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCCHHHHHHhhHH-HHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhc-CCCEEEcCC
Q 016596 252 ELSPVDFEEFSLP-YLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALT-GVDVVSLDW 308 (386)
Q Consensus 252 ~iSp~~f~ef~~P-~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~-g~d~l~~d~ 308 (386)
.+||.-+.+|..| -+.++++.+++.++++|+++-.++... .+....+. |+|.+.++.
T Consensus 186 ~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG 246 (392)
T cd02808 186 LISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDG 246 (392)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeC
Confidence 5666555555443 357788888887644788888887632 34444444 499988754
No 476
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.10 E-value=3e+02 Score=25.55 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcC--CC-EE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTG--VD-VV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g--~d-~l 304 (386)
++++.+.++|++++.+.|- +. + ...++++.++++ |...++-+--++. .+..+.+.. +. ++
T Consensus 106 ~f~~~~~~aGvdgviipDl-----p~---e-----e~~~~~~~~~~~--gl~~i~lv~P~T~~eri~~i~~~~~gfiy~v 170 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-----PL---E-----ESGDLVEAAKKH--GVKPIFLVAPNADDERLKQIAEKSQGFVYLV 170 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-----Ch---H-----HHHHHHHHHHHC--CCcEEEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 4566788999999998763 22 1 245677888887 4444433333333 455555432 22 12
Q ss_pred EcC----CC----CC----HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 305 SLD----WT----VD----MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 305 ~~d----~~----~d----l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
+.. .. .+ ++.+|+..+..+.+-|||+ |+|+++ ++++.+.+ |+|+++.
T Consensus 171 s~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~------~~e~~~----~~~~~GAD-gvVvGSa 229 (256)
T TIGR00262 171 SRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGIS------KPEQVK----QAIDAGAD-GVIVGSA 229 (256)
T ss_pred ECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCC------CHHHHH----HHHHcCCC-EEEECHH
Confidence 321 11 12 3455554444455555553 456554 44444323 6777664
No 477
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.04 E-value=2.2e+02 Score=24.04 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE-Ec
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV-SL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l-~~ 306 (386)
+.+++.++..+++|-++.-.+. ++ -..+++++.++++|.+ .+.+-.-|+.. -+..+.+.|++.+ ++
T Consensus 54 e~v~aA~~~dv~vIgvSsl~g~------h~----~l~~~lve~lre~G~~-~i~v~~GGvip~~d~~~l~~~G~~~if~p 122 (143)
T COG2185 54 EAVRAAVEEDVDVIGVSSLDGG------HL----TLVPGLVEALREAGVE-DILVVVGGVIPPGDYQELKEMGVDRIFGP 122 (143)
T ss_pred HHHHHHHhcCCCEEEEEeccch------HH----HHHHHHHHHHHHhCCc-ceEEeecCccCchhHHHHHHhCcceeeCC
Confidence 3444556778888877554432 22 2456788888888543 33335555554 3677899999865 44
Q ss_pred CCCCCHHHHHH
Q 016596 307 DWTVDMAEGRR 317 (386)
Q Consensus 307 d~~~dl~e~~~ 317 (386)
. +++.++..
T Consensus 123 g--t~~~~~~~ 131 (143)
T COG2185 123 G--TPIEEALS 131 (143)
T ss_pred C--CCHHHHHH
Confidence 3 45544433
No 478
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.78 E-value=1.6e+02 Score=27.63 Aligned_cols=69 Identities=4% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCceeEEeecCcHHHHH-----HHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Q 016596 175 NNEAAVLGFVGAPFTLA-----SYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIF 246 (386)
Q Consensus 175 g~~~~v~~~~~gPft~a-----~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~ 246 (386)
|-++|++.++..+.+.- ..+.|-...+.+.+.+...-++++. +-+.-.++..+.++.+.+.|++++.+.
T Consensus 183 gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~~~~~~---~~~~gi~~~~~~~~~l~~~g~~GiHl~ 256 (272)
T TIGR00676 183 GIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEKYDDDPEE---VRAVGIEYATDQCEDLIAEGVPGIHFY 256 (272)
T ss_pred CCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 55688888777554322 1233323333333322222233433 334466777777778888899999864
No 479
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=40.67 E-value=4.3e+02 Score=27.28 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecC--C---cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC---------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDS--W---ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS--------- 289 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~--~---~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~--------- 289 (386)
-++-.+..++.+-++|.+.|=+... + -.+++.+-|++ ++++-+.+. +.++.+.+-|.
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwer-----lr~lr~~~~----nt~lqmL~Rg~N~vGy~~y~ 95 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWER-----LRTFRKLMP----NSRLQMLLRGQNLLGYRHYE 95 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHH-----HHHHHHhCC----CCeEEEEEcccccCCccCcc
Confidence 3445555666677788776644210 0 12566666554 344444443 45666666554
Q ss_pred --cc--hHHHHHhcCCCEEEc-CCCCCHH------HHHHHhCCCeeEEecCCcCc-cCCCHHHHHHHHHHHHHHcCCCCe
Q 016596 290 --GG--LLERLALTGVDVVSL-DWTVDMA------EGRRRLGPDVAVQGNVDPGA-LFGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 290 --~~--~l~~l~e~g~d~l~~-d~~~dl~------e~~~~~g~~~~l~G~vd~~~-l~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
.. .++...+.|+|++.+ +...|+. ++.++.|.. ..|.|.-.. -.-|+|.+.+.++++.+.+.+
T Consensus 96 ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~--~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad--- 170 (499)
T PRK12330 96 DEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKH--AQGTICYTVSPIHTVEGFVEQAKRLLDMGAD--- 170 (499)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCe--EEEEEEEecCCCCCHHHHHHHHHHHHHcCCC---
Confidence 11 245556789999865 5444543 222334442 223331111 145889999988888775423
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+++-. +...-..|+.+..++++.++
T Consensus 171 ~I~Ik-DtaGll~P~~~~~LV~~Lk~ 195 (499)
T PRK12330 171 SICIK-DMAALLKPQPAYDIVKGIKE 195 (499)
T ss_pred EEEeC-CCccCCCHHHHHHHHHHHHH
Confidence 34332 33334456678788887765
No 480
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.45 E-value=1.6e+02 Score=30.23 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGV 301 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~ 301 (386)
.+-..+.++.++++|+|.|.+ |..-+ =| .+..++++.+|+.+++++++. ||.. -...+.+.|+
T Consensus 223 ~~~~~~ra~~Lv~aGVd~i~~-D~a~g-~~---------~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 223 NGDVGGKAKALLDAGVDVLVI-DTAHG-HQ---------VKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred CccHHHHHHHHHHhCCCEEEE-eCCCC-Cc---------HHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCC
Confidence 455567888899999999876 43321 11 345566777777655667655 6543 3678889999
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 289 d~i~v 293 (475)
T TIGR01303 289 NIIKV 293 (475)
T ss_pred CEEEE
Confidence 99873
No 481
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=40.07 E-value=1.7e+02 Score=27.94 Aligned_cols=70 Identities=4% Similarity=-0.033 Sum_probs=39.5
Q ss_pred CCceeEEeecCcHHHHH-----HHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q 016596 175 NNEAAVLGFVGAPFTLA-----SYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFD 247 (386)
Q Consensus 175 g~~~~v~~~~~gPft~a-----~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d 247 (386)
|-++|++.++.++.+.- ..+.|-+.-+.+.+.+...-++++ +..+.-.++..+.++.+++.|++++.+.-
T Consensus 202 Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~---~~~~~Gi~~a~e~i~~L~~~gv~GvH~yt 276 (296)
T PRK09432 202 GIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAE---TRKLVGASIAMDMVKILSREGVKDFHFYT 276 (296)
T ss_pred CCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHCCCCEEEEec
Confidence 55789988887664322 233332222323222222223333 33444666777778888888999998753
No 482
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=39.92 E-value=3.3e+02 Score=25.77 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHH--HhcCCCEEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL--ALTGVDVVS 305 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l--~e~g~d~l~ 305 (386)
..-++.+.++|+|.| | ++ ..+| ..+++..+|..+ + .+.+|+..++=+-+ .+.|+|+++
T Consensus 77 ~~Ea~~L~eaGvDiI---D--aT~r~rP----------~~~~~~~iK~~~-~---~l~MAD~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 77 FVEAQILEALGVDMI---D--ESEVLTP----------ADEEHHIDKHKF-K---VPFVCGARNLGEALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHHHcCCCEE---e--ccCCCCc----------HHHHHHHHHHHc-C---CcEEccCCCHHHHHHHHHCCCCEEE
Confidence 455677889999988 3 43 5677 356677777653 2 45677776653433 568999886
Q ss_pred c
Q 016596 306 L 306 (386)
Q Consensus 306 ~ 306 (386)
.
T Consensus 138 T 138 (283)
T cd04727 138 T 138 (283)
T ss_pred e
Confidence 4
No 483
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=39.49 E-value=3.2e+02 Score=25.40 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=58.2
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC---
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW--- 308 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~--- 308 (386)
+....++|||++.+. ++.++++ -++++++.+++. |.-+++-+. +..-++...++|++++.+.+
T Consensus 126 i~~a~~~GAD~VlLi---~~~l~~~--------~l~~li~~a~~l--Gl~~lvevh-~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 126 IYEARAAGADAILLI---VAALDDE--------QLKELLDYAHSL--GLDVLVEVH-DEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred HHHHHHcCCCEEEEE---eccCCHH--------HHHHHHHHHHHc--CCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCc
Confidence 555678999998863 2235553 556677888886 344333332 22224556788999997754
Q ss_pred ---CCCHHHHHHH---hCCC-e-eEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC
Q 016596 309 ---TVDMAEGRRR---LGPD-V-AVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362 (386)
Q Consensus 309 ---~~dl~e~~~~---~g~~-~-~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g 362 (386)
.+|+....+. +++. . .-.||+ .|+|++++ +++. |-.+++++++
T Consensus 192 ~~~~~d~~~~~~l~~~~p~~~~vIaegGI------~t~ed~~~----~~~~-Gad~vlVGsa 242 (260)
T PRK00278 192 KTFEVDLETTERLAPLIPSDRLVVSESGI------FTPEDLKR----LAKA-GADAVLVGES 242 (260)
T ss_pred ccccCCHHHHHHHHHhCCCCCEEEEEeCC------CCHHHHHH----HHHc-CCCEEEECHH
Confidence 2465544443 3321 2 223444 35665543 3333 3346666554
No 484
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=38.62 E-value=4e+02 Score=26.35 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=38.2
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEec-CCcc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYAS-GSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~d 307 (386)
-++.|++++...+.+++++.++ +++.+++..+ +..+.+-+. ++.+ .+..+.+.|++-+++.
T Consensus 73 ~i~siy~GGGTPs~L~~~~L~~--------ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiG 139 (394)
T PRK08898 73 QVHTVFIGGGTPSLLSAAGLDR--------LLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIG 139 (394)
T ss_pred ceeEEEECCCCcCCCCHHHHHH--------HHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEe
Confidence 3667888888888999987655 4444444321 112233332 3333 4788999999988764
No 485
>PRK00208 thiG thiazole synthase; Reviewed
Probab=38.61 E-value=2.5e+02 Score=26.12 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=52.2
Q ss_pred cEEEEecCCcc-hHHHHHhcCCCEEEc--C---CC---CC---HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHH
Q 016596 281 SLILYASGSGG-LLERLALTGVDVVSL--D---WT---VD---MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDT 348 (386)
Q Consensus 281 ~~~~H~cG~~~-~l~~l~e~g~d~l~~--d---~~---~d---l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~ 348 (386)
..++=.|-+.. .-..+.++|.+++.+ . .. .+ ++.+++..+-.+..-||| +|||++.+..+
T Consensus 124 f~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI------~tpeda~~Ame-- 195 (250)
T PRK00208 124 FVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGI------GTPSDAAQAME-- 195 (250)
T ss_pred CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCC------CCHHHHHHHHH--
Confidence 45664666554 458888899998854 1 11 13 344444432223333443 78888766543
Q ss_pred HHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 349 VRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 349 i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
+|-.+.+++++=. -..-|...-++|.++++
T Consensus 196 ---lGAdgVlV~SAIt-ka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 196 ---LGADAVLLNTAIA-VAGDPVAMARAFKLAVE 225 (250)
T ss_pred ---cCCCEEEEChHhh-CCCCHHHHHHHHHHHHH
Confidence 4434677766533 23447777888887775
No 486
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.45 E-value=1.5e+02 Score=27.91 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCCC-CcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHh
Q 016596 264 PYLKQIVDTVKQTHPD-LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRL 319 (386)
Q Consensus 264 P~~k~l~~~i~~~~~~-~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~ 319 (386)
...++.++.+++..+. .++.+- |.+..-.....+.|+|++.+|. ++++++++..
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VE-v~tleea~~A~~~GaDiI~LDn-~~~e~l~~~v 220 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIE-CESLEEAKNAMNAGADIVMCDN-MSVEEIKEVV 220 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEE-eCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHH
Confidence 3456777777775431 233332 2333334455678888888875 5666666554
No 487
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=38.38 E-value=2.7e+02 Score=24.35 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=64.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC-
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW- 308 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~- 308 (386)
.+++.+.++|+|++.+... ..... .+..+++. +.. +--+|.+..-.....+.|+|.+.+..
T Consensus 72 ~~~~~a~~~gad~vh~~~~---~~~~~------------~~~~~~~~--~~~-~g~~~~t~~e~~~a~~~gaD~v~~~~~ 133 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQD---DLPVA------------DARALLGP--DAI-IGLSTHTLEEAAAALAAGADYVGVGPI 133 (212)
T ss_pred ChHHHHHHcCCCEEecCcc---cCCHH------------HHHHHcCC--CCE-EEEeCCCHHHHHHHhHcCCCEEEECCc
Confidence 4566778899999876321 11111 12233332 222 33445432223344467999886421
Q ss_pred --C---------C---CHHHHHHHhC-CCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHH
Q 016596 309 --T---------V---DMAEGRRRLG-PDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEEN 373 (386)
Q Consensus 309 --~---------~---dl~e~~~~~g-~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~En 373 (386)
. . .+.++++.++ -.+...|||++ +.++++++.+ -.+++++++ =....-|.+.
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~-----------~~i~~~~~~G-a~gv~~gs~-i~~~~d~~~~ 200 (212)
T PRK00043 134 FPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITP-----------ENAPEVLEAG-ADGVAVVSA-ITGAEDPEAA 200 (212)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCH-----------HHHHHHHHcC-CCEEEEeHH-hhcCCCHHHH
Confidence 1 1 2455566665 45777888854 3345555543 235555433 1123447777
Q ss_pred HHHHHHHHHh
Q 016596 374 VAHFFEVAKA 383 (386)
Q Consensus 374 i~a~~~a~~~ 383 (386)
++.+.+..++
T Consensus 201 ~~~l~~~~~~ 210 (212)
T PRK00043 201 ARALLAAFRA 210 (212)
T ss_pred HHHHHHHHhh
Confidence 8777766553
No 488
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=37.52 E-value=2.4e+02 Score=29.18 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHc--------CCCCeEEecCCC
Q 016596 335 FGSKDFITNRINDTVRKA--------GRWKHILNLGHG 364 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~--------~~~g~Ils~gc~ 364 (386)
.|+.+++.+++++.++.+ .+++++.+.||.
T Consensus 371 rG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~ 408 (522)
T cd03340 371 RGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408 (522)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHH
Confidence 677777788877777653 145677777764
No 489
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=37.50 E-value=4.3e+02 Score=26.34 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=68.6
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEcCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSLDW 308 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~d~ 308 (386)
++.+.++|+|.+.+.-.. ++ ...++.++.+++. |..+.+-.++-.+ .+..+ ..++|.+.+..
T Consensus 243 v~~~a~aGAD~vTVH~ea----~~--------~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht 307 (391)
T PRK13307 243 ARMAADATADAVVISGLA----PI--------STIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHR 307 (391)
T ss_pred HHHHHhcCCCEEEEeccC----CH--------HHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEcc
Confidence 667789999988864321 11 1356788888887 4566663444222 34444 55777664321
Q ss_pred ----C------CCHHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHH
Q 016596 309 ----T------VDMAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHF 377 (386)
Q Consensus 309 ----~------~dl~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~ 377 (386)
. .++.++++..++ .+.+-|||.+ |. ++++++. |-..+|++.+-. -.+-|.+.++.+
T Consensus 308 ~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~-------et----i~~l~~a-GADivVVGsaIf-~a~Dp~~aak~l 374 (391)
T PRK13307 308 GIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRV-------EN----VEEALKA-GADILVVGRAIT-KSKDVRRAAEDF 374 (391)
T ss_pred ccCCCcccchHHHHHHHHHhCCCCcEEEECCcCH-------HH----HHHHHHc-CCCEEEEeHHHh-CCCCHHHHHHHH
Confidence 1 135666665322 4788888854 33 4445543 323666665521 122367777777
Q ss_pred HHHH
Q 016596 378 FEVA 381 (386)
Q Consensus 378 ~~a~ 381 (386)
.+..
T Consensus 375 ~~~i 378 (391)
T PRK13307 375 LNKL 378 (391)
T ss_pred HHhh
Confidence 6655
No 490
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.48 E-value=3.2e+02 Score=24.90 Aligned_cols=135 Identities=12% Similarity=0.102 Sum_probs=75.4
Q ss_pred HHHHHHH-hCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch---HHHHHhcCCCEEE
Q 016596 231 YVQYQAD-NGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL---LERLALTGVDVVS 305 (386)
Q Consensus 231 ~~~~~~e-~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~---l~~l~e~g~d~l~ 305 (386)
.++.+.+ .|++-+++.|-.+.. =.+.. .+..+++.+.+ +.| +..+|.... +..+.++|++-+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n-----~~~I~~i~~~~-----~~p--i~vGGGIrs~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHARE-----FDYIKSLRRLT-----TKD--IEVGGGIRTKSQIMDYFAAGINYCI 103 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcch-----HHHHHHHHhhc-----CCe--EEEcCCcCCHHHHHHHHHCCCCEEE
Confidence 4555666 699999999855432 11111 23345555432 334 677887763 5567778999776
Q ss_pred cCCC--CC---HHHHHHHhCCCeeEEecCCcC--c-c-CC----CHHHHHHHHHHHHHHcCCCCeEEecCC--CCCCCCc
Q 016596 306 LDWT--VD---MAEGRRRLGPDVAVQGNVDPG--A-L-FG----SKDFITNRINDTVRKAGRWKHILNLGH--GIKVGTP 370 (386)
Q Consensus 306 ~d~~--~d---l~e~~~~~g~~~~l~G~vd~~--~-l-~g----t~eev~~~v~~~i~~~~~~g~Ils~gc--~i~~~tp 370 (386)
+... .| ++++.++||+++++. +|.. . . .| +.-++.+.++++ ...+-+++|+..-. +...+..
T Consensus 104 igt~a~~~~~~l~~~~~~fg~~ivvs--lD~~~g~v~~~gw~~~~~~~~~~~~~~~-~~~g~~~ii~tdi~~dGt~~G~~ 180 (234)
T PRK13587 104 VGTKGIQDTDWLKEMAHTFPGRIYLS--VDAYGEDIKVNGWEEDTELNLFSFVRQL-SDIPLGGIIYTDIAKDGKMSGPN 180 (234)
T ss_pred ECchHhcCHHHHHHHHHHcCCCEEEE--EEeeCCEEEecCCcccCCCCHHHHHHHH-HHcCCCEEEEecccCcCCCCccC
Confidence 6543 24 578888899885543 6642 1 1 22 222233444443 23332466666542 3445666
Q ss_pred HHHHHHHHHH
Q 016596 371 EENVAHFFEV 380 (386)
Q Consensus 371 ~Eni~a~~~a 380 (386)
.+-++.+.+.
T Consensus 181 ~~li~~l~~~ 190 (234)
T PRK13587 181 FELTGQLVKA 190 (234)
T ss_pred HHHHHHHHHh
Confidence 7766666554
No 491
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=37.41 E-value=3e+02 Score=26.96 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. .++.. +++.++.+.+.+.. ..+|+.+|.+-..+ .+..-++.|++.+.+
T Consensus 31 aii~AAEe~~sPvIlq~s~~~~~~~g~----~~~~~~~~~~ae~~----~~VPValHLDHg~~~e~i~~Ai~~GFtSVMi 102 (347)
T TIGR01521 31 AIMEAADKTDSPVILQASRGARSYAGA----PFLRHLILAAIEEY----PHIPVVMHQDHGNSPATCQRAIQLGFTSVMM 102 (347)
T ss_pred HHHHHHHHhCCCEEEECCcchhhhCCH----HHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHcCCCEEee
Confidence 334455566777766432221 12332 23344444443322 13799999864433 466667889999888
Q ss_pred CCC
Q 016596 307 DWT 309 (386)
Q Consensus 307 d~~ 309 (386)
|..
T Consensus 103 DgS 105 (347)
T TIGR01521 103 DGS 105 (347)
T ss_pred cCc
Confidence 754
No 492
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=37.39 E-value=2.8e+02 Score=24.19 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCE
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDV 303 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~ 303 (386)
...+.++++.+.|++.+.+..... . ..+ .+..+++.. +-...-+|... .++...+.|.+.
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~-----~-----~~~----~i~~l~~~~---~~~~iGag~v~~~~~~~~a~~~Ga~~ 79 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTP-----G-----ALE----AIRALRKEF---PEALIGAGTVLTPEQADAAIAAGAQF 79 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCh-----h-----HHH----HHHHHHHHC---CCCEEEEEeCCCHHHHHHHHHcCCCE
Confidence 344556678889999988754322 1 111 334444432 11234445542 367777888887
Q ss_pred EEcCC-CCCHHHHHHHhCC
Q 016596 304 VSLDW-TVDMAEGRRRLGP 321 (386)
Q Consensus 304 l~~d~-~~dl~e~~~~~g~ 321 (386)
++... ..++.++++..+-
T Consensus 80 i~~p~~~~~~~~~~~~~~~ 98 (190)
T cd00452 80 IVSPGLDPEVVKAANRAGI 98 (190)
T ss_pred EEcCCCCHHHHHHHHHcCC
Confidence 75543 2355566666543
No 493
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=37.26 E-value=1.8e+02 Score=26.62 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--
Q 016596 214 PKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-- 291 (386)
Q Consensus 214 Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-- 291 (386)
+=-+|+++|.+.+ -.+.++.+++.|...|.. +++--|. .-..|.++++++..++ .+.+-.+|..+
T Consensus 117 ~vTFHrAFD~~~d-~~~ale~li~~Gv~RILT---sGg~~sa----~eg~~~l~~li~~a~g-----ri~Im~GaGV~~~ 183 (241)
T COG3142 117 GVTFHRAFDECPD-PLEALEQLIELGVERILT---SGGKASA----LEGLDLLKRLIEQAKG-----RIIIMAGAGVRAE 183 (241)
T ss_pred ceeeehhhhhcCC-HHHHHHHHHHCCCcEEec---CCCcCch----hhhHHHHHHHHHHhcC-----CEEEEeCCCCCHH
Confidence 4457888888888 667788889999998874 3332332 2356778888888863 24556666654
Q ss_pred hHHHH-HhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC--ccCCCHHHHHHHHHHHHH
Q 016596 292 LLERL-ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG--ALFGSKDFITNRINDTVR 350 (386)
Q Consensus 292 ~l~~l-~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~--~l~gt~eev~~~v~~~i~ 350 (386)
.+..| ..+|+.-+|..... ...+-+.-..+|..+-. ...-|..+..++++.+++
T Consensus 184 N~~~l~~~tg~~e~H~s~~~-----~~~~~~~~~~m~~~~~~~~~~~~td~~~v~~~~~~l~ 240 (241)
T COG3142 184 NIAELVLLTGVTEVHGSAGV-----EMRYRNPGSSMGADDFADEYIYDTDGAAVAEMKAILE 240 (241)
T ss_pred HHHHHHHhcCchhhhhcccc-----cccccCccCccccccccccccccCcHHHHHHHHHHhc
Confidence 46666 67888877665433 11121222334443332 225566666666666654
No 494
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=37.18 E-value=2.2e+02 Score=27.85 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
.+++..+.+..+|.-..+.. .+++. +++..++..+.+...++|+.+|.+-... .+..-++.|++.+.+|
T Consensus 34 vi~AAEe~~sPvIlq~s~~~~~~~g~--------~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiD 105 (347)
T PRK13399 34 IMEAAEATDSPVILQASRGARKYAGD--------AMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMD 105 (347)
T ss_pred HHHHHHHhCCCEEEECCcchhhhCCH--------HHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEe
Confidence 34455566777765332222 23332 2333444444433213799999864433 4677788999988877
Q ss_pred CC
Q 016596 308 WT 309 (386)
Q Consensus 308 ~~ 309 (386)
..
T Consensus 106 gS 107 (347)
T PRK13399 106 GS 107 (347)
T ss_pred CC
Confidence 53
No 495
>PRK08445 hypothetical protein; Provisional
Probab=36.90 E-value=4.1e+02 Score=25.90 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe------------cCCc-c-hHH
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA------------SGSG-G-LLE 294 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~------------cG~~-~-~l~ 294 (386)
.+.++...+.|+..|++.+.....+. ..++.++++.+++..+. +-+|. +|.. . .+.
T Consensus 79 ~~~~~~a~~~g~~~i~~~gg~~~~~~--------~e~~~~l~~~Ik~~~p~--i~~~a~s~~ei~~~a~~~~~~~~e~L~ 148 (348)
T PRK08445 79 DKKIEELLAIGGTQILFQGGVHPKLK--------IEWYENLVSHIAQKYPT--ITIHGFSAVEIDYIAKISKISIKEVLE 148 (348)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCC--------HHHHHHHHHHHHHHCCC--cEEEEccHHHHHHHHHHhCCCHHHHHH
Confidence 33444466778888876543332333 33667788888887532 23332 2332 2 478
Q ss_pred HHHhcCCCEE
Q 016596 295 RLALTGVDVV 304 (386)
Q Consensus 295 ~l~e~g~d~l 304 (386)
.|++.|++.+
T Consensus 149 ~LkeAGl~~~ 158 (348)
T PRK08445 149 RLQAKGLSSI 158 (348)
T ss_pred HHHHcCCCCC
Confidence 8889999865
No 496
>PLN02540 methylenetetrahydrofolate reductase
Probab=36.82 E-value=2.3e+02 Score=29.78 Aligned_cols=77 Identities=3% Similarity=-0.051 Sum_probs=43.4
Q ss_pred HHHHHHHhCCceeEEeecCcHHH-----HHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 167 LTILREEVNNEAAVLGFVGAPFT-----LASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 167 ~~~l~~~~g~~~~v~~~~~gPft-----~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
++++++ .|-++||+.++..+-+ .+..+.|-..-+.+.+.+....+++|.+ .+.-+++..+.++.+++.|++
T Consensus 188 ~~~~r~-~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v---~~~Gieia~e~~~~L~~~Gv~ 263 (565)
T PLN02540 188 VNDCRQ-IGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAV---KAYGIHLGTEMCKKILAHGIK 263 (565)
T ss_pred HHHHHh-cCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHcCCC
Confidence 344443 3556898887764432 2233443222233333333334455544 344667777788888899999
Q ss_pred EEEEec
Q 016596 242 AVQIFD 247 (386)
Q Consensus 242 ~i~i~d 247 (386)
++.+.-
T Consensus 264 GiHfYT 269 (565)
T PLN02540 264 GLHLYT 269 (565)
T ss_pred EEEECc
Confidence 998753
No 497
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=36.78 E-value=2.2e+02 Score=29.27 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEcCCCCC--------HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeE---Eec
Q 016596 293 LERLALTGVDVVSLDWTVD--------MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHI---LNL 361 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~~~d--------l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~I---ls~ 361 (386)
.+.+.+.|++++.+|.... ++++|+.+++-..+.|||-+ .+.++.+++.+.+ +| +++
T Consensus 246 ~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t----------~~~a~~~~~aGad--~I~vg~g~ 313 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVT----------ADQAKNLIDAGAD--GLRIGMGS 313 (495)
T ss_pred HHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCC----------HHHHHHHHHcCCC--EEEECCcC
Q ss_pred C----------CCCCCCCcHHHHHHHHHHHHhhc
Q 016596 362 G----------HGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 362 g----------c~i~~~tp~Eni~a~~~a~~~yg 385 (386)
| +++| ....+....++++++|
T Consensus 314 Gs~~~t~~~~~~g~p---~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 314 GSICITQEVCAVGRP---QASAVYHVARYARERG 344 (495)
T ss_pred CcccccchhccCCCC---hHHHHHHHHHHHhhcC
No 498
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.74 E-value=2.4e+02 Score=26.75 Aligned_cols=16 Identities=25% Similarity=0.086 Sum_probs=9.1
Q ss_pred HHHHHhcCCCEEEcCC
Q 016596 293 LERLALTGVDVVSLDW 308 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~ 308 (386)
.....+.|+|++-+|+
T Consensus 202 a~ea~~agaDiI~LDn 217 (284)
T PRK06096 202 AIAALRAQPDVLQLDK 217 (284)
T ss_pred HHHHHHcCCCEEEECC
Confidence 3444556666666663
No 499
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=36.58 E-value=93 Score=24.83 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHh-hHHHHHHHHHHHHhh
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEF-SLPYLKQIVDTVKQT 276 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef-~~P~~k~l~~~i~~~ 276 (386)
-+.+.++-+.|..++++.+=-| +||+.|..| ...--...++.+++.
T Consensus 17 GKaINaLte~GITGFyl~eYkG--mSP~~wkgf~l~EDpe~ai~~I~d~ 63 (110)
T PF10126_consen 17 GKAINALTEGGITGFYLHEYKG--MSPQDWKGFLLDEDPEMAIKAINDL 63 (110)
T ss_pred HHHHHHHHhcCccEEEeEeecC--CChHHhcCcccccCHHHHHHHHHHh
Confidence 3445566678999988766444 899999998 444445666777765
No 500
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=36.58 E-value=4e+02 Score=25.70 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHH-------------
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMA------------- 229 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~------------- 229 (386)
..++.+ +.++.|-+ -|=-+++.|-.....- | .. -.|+++|+.+.++++.+.+..-
T Consensus 81 l~eaA~-~~~~~g~~-~IdlN~GCP~~~V~~~---g-~G------a~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d 148 (323)
T COG0042 81 LAEAAK-IAEELGAD-IIDLNCGCPSPKVVKG---G-AG------AALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWD 148 (323)
T ss_pred HHHHHH-HHHhcCCC-EEeeeCCCChHHhcCC---C-cc------hhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccC
Confidence 344444 44444511 1223677775533321 1 11 4688999999999999988772
Q ss_pred -------HHHHHHHHhCCCEEEEecCCc--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---h-HHHH
Q 016596 230 -------KYVQYQADNGAQAVQIFDSWA--TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---L-LERL 296 (386)
Q Consensus 230 -------~~~~~~~e~G~d~i~i~d~~~--~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~-l~~l 296 (386)
+.++.+.++|++.+.+.--.. ..-+| --|.+.+++-+.+. .+| +-.-|++. . .+.+
T Consensus 149 ~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~-----ad~~~I~~vk~~~~----~ip--vi~NGdI~s~~~a~~~l 217 (323)
T COG0042 149 DDDILALEIARILEDAGADALTVHGRTRAQGYLGP-----ADWDYIKELKEAVP----SIP--VIANGDIKSLEDAKEML 217 (323)
T ss_pred cccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc-----cCHHHHHHHHHhCC----CCe--EEeCCCcCCHHHHHHHH
Confidence 356666778999998865332 24455 33444445544442 133 45566643 2 4556
Q ss_pred HhcCCCEEEcC
Q 016596 297 ALTGVDVVSLD 307 (386)
Q Consensus 297 ~e~g~d~l~~d 307 (386)
..+|+|.+.+.
T Consensus 218 ~~tg~DgVMig 228 (323)
T COG0042 218 EYTGADGVMIG 228 (323)
T ss_pred HhhCCCEEEEc
Confidence 66789998774
Done!