BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016598
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From
           Pseudomonas Aeruginosa
 pdb|2ARZ|B Chain B, Crystal Structure Of Protein Of Unknown Function From
           Pseudomonas Aeruginosa
          Length = 247

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 159 TVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG 218
            V+S    +  G+PFGS+V +  D+ G P+   S +A HT NL ADPRC+++V   G   
Sbjct: 22  AVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAED 81

Query: 219 L-SNARVTIFGDIFPLPEHQQEWAHKQYI------AKHHQGPSQQWGNFYYFRMQDISDI 271
           + +  R+T+  +   L E +   A ++Y       A +H+       +F ++ +Q +   
Sbjct: 82  IQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRV-----HDFDFWVLQPV-QW 135

Query: 272 YFIGGFGTVAWVDVKEYEALLPDKIAVEGG--EHYLKELNAAFSKLLKELLSAETEVDDA 329
            FIGGFG + W+  +      P     E G  EH   +  AA +  ++  L+       A
Sbjct: 136 RFIGGFGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVE--LAGLPAHAAA 193

Query: 330 AIISLDSKGIDVRVRQGAQF 349
            +  +D++G  +R+ QG  +
Sbjct: 194 QLAGIDTEGFHLRIGQGLHW 213


>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown
           Function) From Agrobacterium Tumefaciens Str. C58
 pdb|3DNH|B Chain B, The Crystal Structure Of The Protein Atu2129 (Unknown
           Function) From Agrobacterium Tumefaciens Str. C58
          Length = 258

 Score = 35.8 bits (81), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 146 RNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADP 205
           R+++  +R A L T+         GYP+ +  +   +  G P F  + L +H RN   D 
Sbjct: 33  RDVLHTSRTAALATL-----DPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNXETDA 87

Query: 206 RCTLVVQIPG-WSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQG 252
           R ++ +   G    L+  R+T+ G    +   +   A  +YIA++ + 
Sbjct: 88  RISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKA 135


>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
           From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
 pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
           From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
          Length = 157

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 169 EGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLV 210
           +G P GS   F  D   +     S LA+HT+N+ A+P   ++
Sbjct: 41  QGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVL 82


>pdb|1XHN|A Chain A, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|B Chain B, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|C Chain C, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
 pdb|1XHN|D Chain D, The Crystal Structure Of Cellular Repressor Of E1a-
           Stimulated Genes (Creg)
          Length = 184

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 170 GYPFG---SLVDFAPDS-MGHPIFSFSPLAIHTRNLLADPRCTLVVQIP--------GWS 217
           G PF    SL D  P +  G P F  SPL +   NL  +P  TL   +         G+ 
Sbjct: 46  GRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTXTLAQTNFCKKHGFD 105

Query: 218 GLS--NARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIG 275
             S     + + G +  + E + + A      +H +  +    + ++F   +I++I+ + 
Sbjct: 106 PQSPLCVHIXLSGTVTKVNETEXDIAKHSLFIRHPEXKTWPSSHNWFFAKLNITNIWVLD 165

Query: 276 GFGTVAWVDVKEY 288
            FG    V  +EY
Sbjct: 166 YFGGPKIVTPEEY 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,262,010
Number of Sequences: 62578
Number of extensions: 530454
Number of successful extensions: 1175
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 25
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)