BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016598
         (386 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4G163|FBX43_HUMAN F-box only protein 43 OS=Homo sapiens GN=FBXO43 PE=1 SV=3
          Length = 708

 Score = 38.5 bits (88), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 1   MESVSSSVLN--KPLPSPSYSFAKSSNQR---TGSLKFSESSRCAALGLRLRIHAQAREV 55
           +ES  S V+N  K +PS +  F++++N     T +LK  E + C+   LRL    Q    
Sbjct: 176 LESSISQVINLEKNIPSSASGFSRANNFSPLVTSTLKTEEVTSCSQ-KLRLNFSQQKTST 234

Query: 56  PNEGEDDKPSDNGIGSAFG-DAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPH-----G 109
            ++ +DD        S F  + +S  QGN  ++      +D+ L I   +  P       
Sbjct: 235 IDDSKDD-------CSLFEVECISPIQGNNFKDSITHDFSDSSLCINDENACPELLGSSV 287

Query: 110 SGTSGGTRAGLFRTPISGGV 129
           SGT+ GT   +F TPIS  V
Sbjct: 288 SGTTCGTDEDIFVTPISNLV 307


>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
           OS=Dictyostelium discoideum GN=scsC PE=3 SV=1
          Length = 445

 Score = 37.4 bits (85), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 82  GNTNQNPSGDKDADNLLKI-ETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPR 140
           GN  + P   ++A+ + ++  T  +V      +GG   G+F + + GGVQ  +SA  + +
Sbjct: 56  GNVAETP---EEAEKIAEVMNTQDLVVKAQVLAGGRGKGIFTSGLKGGVQLCSSAEDVKK 112

Query: 141 PA-------LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSP 193
            A       L  +   E  +  H   V  R   R+E Y F  L+D      G P+   SP
Sbjct: 113 FASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKEMY-FAILMD---RKAGGPVMVASP 168


>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1
          Length = 288

 Score = 36.2 bits (82), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 22/167 (13%)

Query: 146 RNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAP----DSMGHPIFSFSPLAIHTRNL 201
           R+L   + +  L TV +  H + +G PFGS +  +     +S G P F  +       +L
Sbjct: 126 RSLAHASSWGCLATVST--HEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTAKDPAVADL 183

Query: 202 LADPRCTLVV----------QIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKH-- 249
           + +P  +LV+           I        AR+T+ G +  +P  + E+A +   ++H  
Sbjct: 184 VKNPTASLVLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVPPGEVEFAKQAMFSRHPG 243

Query: 250 -HQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDK 295
             + P Q    +++ +M  +  I+    +G V+ +  +EY    P K
Sbjct: 244 MRKWPRQY--EWFFMKMW-VEHIWLQKWYGGVSDIPREEYFKAAPRK 287


>sp|O44476|RNZ_CAEEL Ribonuclease Z OS=Caenorhabditis elegans GN=hoe-1 PE=2 SV=2
          Length = 833

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 331 IISLDSKGIDVRVRQG--AQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHN 383
           + S D+K  D+ V +G  A   +   TFEDGH  + + +  + +G+ +  GK  N
Sbjct: 693 VFSGDTKPCDLLVEEGKDADVLVHESTFEDGHEADAMRKRHSTMGQAVDVGKRMN 747


>sp|Q8CDC7|ZBTB9_MOUSE Zinc finger and BTB domain-containing protein 9 OS=Mus musculus
           GN=Zbtb9 PE=2 SV=1
          Length = 459

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 115 GTRAGLFRTP----ISGGVQSATSAHGLPRPAL 143
           G+ A LF+TP    +SGGV  A  +H LP PAL
Sbjct: 218 GSAAPLFQTPQPERVSGGVSQACGSHPLPTPAL 250


>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana
           GN=At3g49140 PE=1 SV=2
          Length = 499

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 259 NFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGE--HYLKELNAAFSKLL 316
           N   F   ++  I  I   G    V+V++     PD IA    E    L+E     ++ L
Sbjct: 367 NVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQPDAIAHASAEIISRLEESGDKITEAL 426

Query: 317 KELLSAETEV--DDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGK 374
           K L      +  ++  +I +DS G D+R+  GA+    R  F    T E  E A+  + K
Sbjct: 427 KSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAKIESLRFAFSTRATSE--ENAEGQIRK 484

Query: 375 VI 376
           ++
Sbjct: 485 LL 486


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,752,289
Number of Sequences: 539616
Number of extensions: 6740919
Number of successful extensions: 17152
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17147
Number of HSP's gapped (non-prelim): 18
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)