Query 016598
Match_columns 386
No_of_seqs 210 out of 1026
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 2.5E-34 5.4E-39 261.1 13.9 150 138-290 3-170 (170)
2 COG0748 HugZ Putative heme iro 99.8 1.5E-22 3.3E-27 191.4 1.9 230 142-384 6-243 (245)
3 KOG3374 Cellular repressor of 99.8 5.9E-20 1.3E-24 164.7 11.7 152 137-291 40-208 (210)
4 PF10615 DUF2470: Protein of u 99.7 2.2E-17 4.7E-22 133.3 7.2 79 293-376 2-83 (83)
5 PRK03467 hypothetical protein; 99.6 1.9E-13 4.1E-18 121.1 16.8 131 141-282 6-141 (144)
6 TIGR03668 Rv0121_F420 PPOX cla 99.3 6.7E-11 1.5E-15 104.8 14.6 121 143-271 3-137 (141)
7 PF01243 Pyridox_oxidase: Pyri 99.2 8.5E-11 1.8E-15 93.6 9.9 87 142-237 2-89 (89)
8 TIGR03618 Rv1155_F420 PPOX cla 99.1 2.5E-09 5.5E-14 89.8 13.5 107 156-272 1-116 (117)
9 TIGR03667 Rv3369 PPOX class pr 99.1 2.6E-09 5.6E-14 92.9 13.5 118 142-270 4-129 (130)
10 TIGR03666 Rv2061_F420 PPOX cla 99.1 1.6E-09 3.4E-14 94.9 11.7 96 147-252 7-102 (132)
11 PF12900 Pyridox_ox_2: Pyridox 98.8 5.8E-08 1.3E-12 85.2 12.6 120 142-272 2-140 (143)
12 COG3787 Uncharacterized protei 98.7 3.3E-07 7.1E-12 79.5 13.3 133 143-286 3-140 (145)
13 PRK05679 pyridoxamine 5'-phosp 98.6 9.6E-07 2.1E-11 82.2 14.3 81 146-237 21-102 (195)
14 COG3467 Predicted flavin-nucle 98.6 1.6E-06 3.5E-11 78.9 15.0 91 140-238 11-109 (166)
15 COG0748 HugZ Putative heme iro 98.5 2.6E-08 5.6E-13 95.1 -0.6 145 136-288 78-228 (245)
16 TIGR00558 pdxH pyridoxamine-ph 98.2 6E-05 1.3E-09 71.5 14.6 78 150-237 47-124 (217)
17 COG3871 Uncharacterized stress 98.1 3.8E-05 8.2E-10 68.1 11.1 122 141-275 6-130 (145)
18 PRK06733 hypothetical protein; 97.9 0.00035 7.7E-09 62.7 14.1 112 139-279 7-120 (151)
19 COG0259 PdxH Pyridoxamine-phos 97.6 0.0011 2.3E-08 62.1 12.8 117 147-275 41-188 (214)
20 PLN03049 pyridoxine (pyridoxam 97.6 0.0014 3E-08 68.8 14.7 78 149-237 286-364 (462)
21 COG5015 Uncharacterized conser 97.3 0.0072 1.6E-07 52.3 12.8 111 144-270 3-117 (132)
22 TIGR00026 hi_GC_TIGR00026 deaz 97.1 0.0066 1.4E-07 52.0 10.3 84 153-252 8-96 (113)
23 PLN02918 pyridoxine (pyridoxam 96.9 0.017 3.8E-07 61.7 13.6 76 151-237 370-446 (544)
24 PF04299 FMN_bind_2: Putative 96.5 0.027 5.9E-07 51.5 10.7 103 140-249 10-134 (169)
25 PF04075 DUF385: Domain of unk 96.5 0.013 2.9E-07 51.4 8.3 82 154-251 27-113 (132)
26 KOG2586 Pyridoxamine-phosphate 95.7 0.029 6.2E-07 52.6 6.5 85 153-252 57-143 (228)
27 PF12766 Pyridox_oxase_2: Pyri 91.4 1.2 2.6E-05 37.3 7.9 75 150-233 18-99 (100)
28 COG2808 PaiB Transcriptional r 89.7 3.1 6.7E-05 39.2 9.7 91 140-237 10-121 (209)
29 COG3576 Predicted flavin-nucle 82.7 8.1 0.00017 35.6 8.6 67 143-215 32-101 (173)
30 PF00313 CSD: 'Cold-shock' DNA 28.0 2.5E+02 0.0054 20.8 6.1 49 155-214 3-54 (66)
31 PF08922 DUF1905: Domain of un 21.4 2.7E+02 0.0057 22.1 5.4 62 139-210 16-79 (80)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=100.00 E-value=2.5e-34 Score=261.09 Aligned_cols=150 Identities=38% Similarity=0.727 Sum_probs=115.7
Q ss_pred CCChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeee----eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEc
Q 016598 138 LPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQI 213 (386)
Q Consensus 138 ~p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya----~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~ 213 (386)
....|+.||+|++.+++|+|+|+++. ++.+|+||+++++|+ .+.+|+|+|++++++.|++||++||||||+|.+
T Consensus 3 ~~~aA~~AR~Ll~~~~~g~LsTls~~--~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~ 80 (170)
T PF13883_consen 3 REEAAELARTLLHQSRWGTLSTLSTQ--KDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISE 80 (170)
T ss_dssp TT-HHHHHHHHHHH-SEEEEEEE--S--GGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEG
T ss_pred hHHHHHHHHHHHhhCCEEEEEeccCC--CCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEec
Confidence 46789999999999999999999852 235899999999999 788999999999999999999999999999998
Q ss_pred cCCC----------ccceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCC-CCCC---CceEEEEEeeeeeEEEecCCcc
Q 016598 214 PGWS----------GLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGP-SQQW---GNFYYFRMQDISDIYFIGGFGT 279 (386)
Q Consensus 214 ~~~~----------~~a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~-~~~~---~Df~~~rL~~~e~V~~VgGFG~ 279 (386)
.+.. .++++||||+|++++|++++.+.++++|+++||+++ |.+. +||.||||+ |++|+||||||+
T Consensus 81 ~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~-i~~v~~vgGFG~ 159 (170)
T PF13883_consen 81 PQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLE-IERVYLVGGFGG 159 (170)
T ss_dssp GGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEE-EEEEEEE-SSSS
T ss_pred CCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEE-EEEEEEECccCC
Confidence 7532 248999999999999998888889999999999998 8899 999999998 999999999999
Q ss_pred eEEecccchhc
Q 016598 280 VAWVDVKEYEA 290 (386)
Q Consensus 280 a~~V~~eey~a 290 (386)
++||+++||..
T Consensus 160 ~~~i~~~~Y~~ 170 (170)
T PF13883_consen 160 AAWISAEEYYN 170 (170)
T ss_dssp -EEE-HHHHHH
T ss_pred ceEeCHHHhcC
Confidence 99999999963
No 2
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-22 Score=191.44 Aligned_cols=230 Identities=20% Similarity=0.249 Sum_probs=187.4
Q ss_pred HHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC-Cccc
Q 016598 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW-SGLS 220 (386)
Q Consensus 142 Ae~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~-~~~a 220 (386)
...+|.+++.+++|.|+|..+ .+|+||+|++++..|-+|+|.++++.++.|++ +.+|+|||+++-+.+. +...
T Consensus 6 ~~na~~~l~~~~~~~l~~~~~-----~~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~ 79 (245)
T COG0748 6 HMNARHLLRSARLAALAGLEP-----VTGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELA 79 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-----CCCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhh
Confidence 456899999999999999873 38999999999999999999999999999999 9999999999988875 6788
Q ss_pred eeEEEEEEEEEeCCcchH--HHHHHHHHHhCCCCC-CCCCCceEEEEEeeeeeEEEecCCcc-eEEecccchhccCCcch
Q 016598 221 NARVTIFGDIFPLPEHQQ--EWAHKQYIAKHHQGP-SQQWGNFYYFRMQDISDIYFIGGFGT-VAWVDVKEYEALLPDKI 296 (386)
Q Consensus 221 ~~RVTL~G~a~~v~~ee~--~~a~~~yl~rhP~a~-~~~~~Df~~~rL~~~e~V~~VgGFG~-a~~V~~eey~aA~PDpl 296 (386)
.+|+|+.+...+++.++. ..+.+.|..++|++. +.+.+||++|+.+ +.+....+|++. +..+-.+|.. .+.
T Consensus 80 ~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~-~arh~~N~~~~p~vs~m~iedea----~a~ 154 (245)
T COG0748 80 LPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISE-IARHARNLGFNPKVSVMFIEDEA----KAK 154 (245)
T ss_pred ccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEeh-HHHHhhccCcCCchhhheecCch----hhh
Confidence 999999999999998874 356677888999998 6788899999997 887766677775 1112222222 223
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhccc---CCCCcEEEEeecCCCcEEEEecCCcceEEEEecCCCCCCCCHHHHHHHHH
Q 016598 297 AVEGGEHYLKELNAAFSKLLKELLSAE---TEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALG 373 (386)
Q Consensus 297 a~~~e~~il~HMN~dH~d~L~~ll~~~---~~~~~a~mlgID~~G~dlrv~~~~~~~~~RIpF~~~~pv~d~~ear~aLv 373 (386)
..+.+.+++.|||++|.+.+..|.... .+....+|.+||+.|+++.+.-..+...+|+.|++ ++.+..+.+.+++
T Consensus 155 s~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgq--a~~~~~d~~~~lV 232 (245)
T COG0748 155 SAFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQ--AYAISGDGRIALV 232 (245)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccch--hhccccchhHHHH
Confidence 334567999999999999987776642 33444559999999999999643333589999988 9999999999999
Q ss_pred HHHHHHHhhcc
Q 016598 374 KVIKKGKVHNL 384 (386)
Q Consensus 374 ~L~~~a~~~~~ 384 (386)
.|.+..+...+
T Consensus 233 ~l~~~~h~~~~ 243 (245)
T COG0748 233 GLAGGPHGFAH 243 (245)
T ss_pred HHhcCcccccc
Confidence 99998776543
No 3
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.82 E-value=5.9e-20 Score=164.66 Aligned_cols=152 Identities=22% Similarity=0.333 Sum_probs=133.5
Q ss_pred CCCChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeee----CCCCCeEEEeCCCchhhhhhhcCCCeEEEEE
Q 016598 137 GLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAP----DSMGHPIFSFSPLAIHTRNLLADPRCTLVVQ 212 (386)
Q Consensus 137 ~~p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~----D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~ 212 (386)
++...|..||-|++++.||+|+|++... +..|+||+.++.+.. .+.|.||||++++.....|+.+|++++|++.
T Consensus 40 ~r~d~A~iAR~lvh~~~Wgal~TlSt~e--~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s 117 (210)
T KOG3374|consen 40 QRLDHAKIARDLVHRANWGALGTLSTNE--RVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFS 117 (210)
T ss_pred chhhHHHHHHHHhhhcccceeeeeeecc--cccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEee
Confidence 3455699999999999999999998644 568999999999885 3469999999999999999999999999998
Q ss_pred ccC--------CC--ccceeEEEEEEEEEeCCcchHH--HHHHHHHHhCCCCC-CCCCCceEEEEEeeeeeEEEecCCcc
Q 016598 213 IPG--------WS--GLSNARVTIFGDIFPLPEHQQE--WAHKQYIAKHHQGP-SQQWGNFYYFRMQDISDIYFIGGFGT 279 (386)
Q Consensus 213 ~~~--------~~--~~a~~RVTL~G~a~~v~~ee~~--~a~~~yl~rhP~a~-~~~~~Df~~~rL~~~e~V~~VgGFG~ 279 (386)
+.. .+ .+.|.+++|+|++..+++.+.+ ...+.|+.|||++. |...|.|+|.+|+ |..|+..+-||+
T Consensus 118 ~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~-isni~vld~~gg 196 (210)
T KOG3374|consen 118 DEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELE-ISNIFVLDFYGG 196 (210)
T ss_pred ccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEe-eeeEEEEEecCC
Confidence 763 13 4689999999999999887643 45689999999998 9999999999997 999999999999
Q ss_pred eEEecccchhcc
Q 016598 280 VAWVDVKEYEAL 291 (386)
Q Consensus 280 a~~V~~eey~aA 291 (386)
.+.|+++||.+.
T Consensus 197 p~~vs~~~yy~v 208 (210)
T KOG3374|consen 197 PHKVSASDYYAV 208 (210)
T ss_pred CcccCHHHhccc
Confidence 999999999863
No 4
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.70 E-value=2.2e-17 Score=133.26 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=62.4
Q ss_pred CcchhcccchhHHHHHHHHHHHHHHHHhccc---CCCCcEEEEeecCCCcEEEEecCCcceEEEEecCCCCCCCCHHHHH
Q 016598 293 PDKIAVEGGEHYLKELNAAFSKLLKELLSAE---TEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAK 369 (386)
Q Consensus 293 PDpla~~~e~~il~HMN~dH~d~L~~ll~~~---~~~~~a~mlgID~~G~dlrv~~~~~~~~~RIpF~~~~pv~d~~ear 369 (386)
|||++.+.+++||+|||+||.++|..||+++ ..+..|+|++||++||+|++ ++...+||||++ |+++++++|
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~--p~~~~~e~r 76 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPP--PVTDPEEAR 76 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS-----SHCCHH
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCC--CCCCHHHHH
Confidence 7899865678999999999999999999863 34588999999999999999 233789999999 999999999
Q ss_pred HHHHHHH
Q 016598 370 TALGKVI 376 (386)
Q Consensus 370 ~aLv~L~ 376 (386)
.+|++|+
T Consensus 77 ~~lV~ma 83 (83)
T PF10615_consen 77 DALVEMA 83 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 5
>PRK03467 hypothetical protein; Provisional
Probab=99.56 E-value=1.9e-13 Score=121.06 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCC-CeEEEeCCCchhhhhhhcCCCeEEEEEccCCCcc
Q 016598 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMG-HPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGL 219 (386)
Q Consensus 141 pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG-~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~ 219 (386)
.-+.+.++|.+.+..+|||.. ++.||+..+.|+.|+++ .+||..++.++|.+++.+||+|..+|..+..+..
T Consensus 6 ~~~~I~~fl~~~hvltLa~~~-------~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~ 78 (144)
T PRK03467 6 TLTAISRWLAKQHVVTLCVGQ-------EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVA 78 (144)
T ss_pred HHHHHHHHHHhCcEEEEEEEc-------CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchh
Confidence 456899999999999999986 67888888899998765 4566666779999999999999999998776677
Q ss_pred ceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCCCCCCCceEEEEEeeeeeEEEec---CCcc-eEE
Q 016598 220 SNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIG---GFGT-VAW 282 (386)
Q Consensus 220 a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V~~Vg---GFG~-a~~ 282 (386)
....|.+.|.+..+++++...++++|.+|||.++.. ...+|+|+ +..|.|++ |||+ ..|
T Consensus 79 ~I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~---~~~iw~l~-l~~iK~tdN~LGFgkKl~w 141 (144)
T PRK03467 79 LIRGVQFKGEIRRLEGEESDAARKRYNRRFPVARAL---SAPVWELR-LDEIKMTDNTLGFGKKLHW 141 (144)
T ss_pred hceEEEEEEEEEecChhHHHHHHHHHHHhCcchhcc---CCceEEEE-EEEEEEeccccccccceEE
Confidence 788999999999999988888999999999999754 34589997 99999999 9995 455
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.30 E-value=6.7e-11 Score=104.75 Aligned_cols=121 Identities=23% Similarity=0.134 Sum_probs=87.8
Q ss_pred HHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeC------CCCCeEEEe------CCCchhhhhhhcCCCeEEE
Q 016598 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPD------SMGHPIFSF------SPLAIHTRNLLADPRCTLV 210 (386)
Q Consensus 143 e~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D------~dG~pi~lv------S~la~HtrNL~~dpRvSL~ 210 (386)
++++.+|+++.+|+|||++ .+|.|+.++|+|+.| +++.+||.. .+...+.+||++||||+|+
T Consensus 3 ~e~~~~L~~~~~~~LaTv~------~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~ 76 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS------PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLL 76 (141)
T ss_pred HHHHHHHccCCEEEEEEEC------CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEE
Confidence 5789999999999999997 499999999999998 357666653 3456789999999999999
Q ss_pred EEccCCCccceeEEEEEEEEEeCCcch-H-HHHHHHHHHhCCCCCCCCCCceEEEEEeeeeeE
Q 016598 211 VQIPGWSGLSNARVTIFGDIFPLPEHQ-Q-EWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDI 271 (386)
Q Consensus 211 V~~~~~~~~a~~RVTL~G~a~~v~~ee-~-~~a~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V 271 (386)
|...+........|++.|+++.+++++ . +.+.+.+.++++....... +..+++|+ |+++
T Consensus 77 v~~~~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~~~-~~~vi~i~-~~r~ 137 (141)
T TIGR03668 77 VDRYDDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAVPL-EGPVIAIR-VERW 137 (141)
T ss_pred EecCCCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhcCC-CCcEEEEE-EEEE
Confidence 865332222234699999999988765 2 3344555555543211122 37788997 8763
No 7
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.22 E-value=8.5e-11 Score=93.55 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=76.8
Q ss_pred HHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCC-CeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccc
Q 016598 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMG-HPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLS 220 (386)
Q Consensus 142 Ae~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG-~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a 220 (386)
-+.++.++++.++++|||++ .+|.|+++++.|..+.+. .++|.....+.|++||++||+|+|++.+.+ ..
T Consensus 2 ~~~~~~~l~~~~~~~laTv~------~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~---~~ 72 (89)
T PF01243_consen 2 TEEIREFLEESKYCVLATVD------EDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE---GT 72 (89)
T ss_dssp HHHHHHHHHSTSEEEEEEEE------TTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT---TT
T ss_pred cHHHHHHhcCCCEEEEEEEC------CCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC---cC
Confidence 36789999999999999997 499999999999976544 688888899999999999999999999876 45
Q ss_pred eeEEEEEEEEEeCCcch
Q 016598 221 NARVTIFGDIFPLPEHQ 237 (386)
Q Consensus 221 ~~RVTL~G~a~~v~~ee 237 (386)
...+.+.|+++.++++|
T Consensus 73 ~~~v~~~G~a~~~~d~E 89 (89)
T PF01243_consen 73 RRGVRVSGTAEILTDEE 89 (89)
T ss_dssp TEEEEEEEEEEEESHHH
T ss_pred ceEEEEEEEEEEEcCCC
Confidence 58999999999998764
No 8
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.09 E-value=2.5e-09 Score=89.83 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=80.6
Q ss_pred EEEeecCcccCCCCCcceeeeeeeeeCC-CCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEEEEEEEEeCC
Q 016598 156 HLCTVMSRMHHRREGYPFGSLVDFAPDS-MGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLP 234 (386)
Q Consensus 156 ~LATv~~~~~~~~dG~P~gS~V~ya~D~-dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~G~a~~v~ 234 (386)
+|+|++ .+|.|+.++++|+.+. ++.++|+.+..+.|++||++||+|+|++.+.+.. ..++++.|.++.++
T Consensus 1 ~LaTv~------~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~---~~~v~i~G~a~~v~ 71 (117)
T TIGR03618 1 VLATIR------ADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFP---YRYVEVEGTAELVE 71 (117)
T ss_pred CEEEEC------CCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCC---ccEEEEEEEEEEec
Confidence 588986 3899999999999843 4558888888899999999999999999987532 15899999999998
Q ss_pred cch-HHHHHHHHHHhCCCCC----C---CCCCceEEEEEeeeeeEE
Q 016598 235 EHQ-QEWAHKQYIAKHHQGP----S---QQWGNFYYFRMQDISDIY 272 (386)
Q Consensus 235 ~ee-~~~a~~~yl~rhP~a~----~---~~~~Df~~~rL~~~e~V~ 272 (386)
+++ .+.+.++|.+++.... + .+.++..+++|+ |++++
T Consensus 72 d~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~-p~~~~ 116 (117)
T TIGR03618 72 DPDPVRDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVT-PTRVY 116 (117)
T ss_pred CCcccHHHHHHHHHHHcccccchhcccccCCCCEEEEEEE-EEEec
Confidence 754 3455555666653321 1 223567889997 88754
No 9
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.08 E-value=2.6e-09 Score=92.93 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=90.6
Q ss_pred HHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccce
Q 016598 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSN 221 (386)
Q Consensus 142 Ae~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~ 221 (386)
.+.++.+|...+++.|||++ .+|.|+..+|.|..+ +|.++|+....+.+.+||++||+|+|++.++... .
T Consensus 4 ~~~~~~~L~~~~~~~LaT~~------~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~---~ 73 (130)
T TIGR03667 4 TAKVARRLREESIVWLTTVR------RSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG---G 73 (130)
T ss_pred CHHHHHHhcCCCeEEEEEEC------CCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC---c
Confidence 46789999999999999997 489999999999887 6889988888889999999999999999775422 2
Q ss_pred eEEEEEEEEEeCCcchHHHHHHHHHHhCCCC-C-C-CC----CCc-eEEEEEeeeee
Q 016598 222 ARVTIFGDIFPLPEHQQEWAHKQYIAKHHQG-P-S-QQ----WGN-FYYFRMQDISD 270 (386)
Q Consensus 222 ~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a-~-~-~~----~~D-f~~~rL~~~e~ 270 (386)
..+.+.|+++.+++.+.....+.|..+++.. + + .+ ..+ ..++||+ |++
T Consensus 74 ~~v~v~G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 129 (130)
T TIGR03667 74 DVVVFTGTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVT-PER 129 (130)
T ss_pred eEEEEEEEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEe-ccc
Confidence 4689999999988765434445566666542 1 1 21 223 3488887 654
No 10
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.07 E-value=1.6e-09 Score=94.87 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=81.4
Q ss_pred HHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEEE
Q 016598 147 NLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTI 226 (386)
Q Consensus 147 tLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL 226 (386)
..|+++++++|+|+. .+|.|+.++++|+.| +|.+||+.+..+.+.+||++||+|+|++.+.... ...+.+
T Consensus 7 ~~L~~~~~~~LaT~~------~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~---~~~v~v 76 (132)
T TIGR03666 7 ADLARARYALLTTFR------KDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR---PTGPVV 76 (132)
T ss_pred HHhccCcEEEEEEEC------CCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC---EeEEEE
Confidence 468899999999986 499999999999987 5899999999999999999999999998775431 245999
Q ss_pred EEEEEeCCcchHHHHHHHHHHhCCCC
Q 016598 227 FGDIFPLPEHQQEWAHKQYIAKHHQG 252 (386)
Q Consensus 227 ~G~a~~v~~ee~~~a~~~yl~rhP~a 252 (386)
.|+++.+++++...+.+.+.++++..
T Consensus 77 ~G~A~~v~~~e~~~~~~~l~~kY~~~ 102 (132)
T TIGR03666 77 PGRARILDGAETARARDLLARRYGLQ 102 (132)
T ss_pred EEEEEEEcchhHHHHHHHHHHHcCCh
Confidence 99999997666666777888888875
No 11
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.83 E-value=5.8e-08 Score=85.23 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC-----
Q 016598 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW----- 216 (386)
Q Consensus 142 Ae~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~----- 216 (386)
.+++..||+++.+|+|+++. +|.||..++.|+.+ +|.+||+.+....+...|+++| +++++...+.
T Consensus 2 ~~e~~~iL~~~~~g~la~~~-------~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~ 72 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD-------DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAE 72 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE-------TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETS
T ss_pred HHHHHHHHhhCCEEEEEEEe-------CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecc
Confidence 36789999999999999987 89999999999999 6889999888888889999888 9999886431
Q ss_pred C----ccceeEEEEEEEEEeCCcch-HHHHHHHHHHhC-CCCCCCC--------CCceEEEEEeeeeeEE
Q 016598 217 S----GLSNARVTIFGDIFPLPEHQ-QEWAHKQYIAKH-HQGPSQQ--------WGNFYYFRMQDISDIY 272 (386)
Q Consensus 217 ~----~~a~~RVTL~G~a~~v~~ee-~~~a~~~yl~rh-P~a~~~~--------~~Df~~~rL~~~e~V~ 272 (386)
. ......|.++|+++.|++++ ..++.+.+.+++ |.- |.. .....+|||+ |+++.
T Consensus 73 ~~~~~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~-i~~~s 140 (143)
T PF12900_consen 73 SACSFSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRID-IEELS 140 (143)
T ss_dssp CGGGEEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEE-EEEEE
T ss_pred cCCcCcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEE-eEEEE
Confidence 1 11357899999999996654 445666666655 422 221 2357999998 88754
No 12
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=3.3e-07 Score=79.46 Aligned_cols=133 Identities=15% Similarity=0.214 Sum_probs=108.9
Q ss_pred HHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeC-CCchhhhhhhcCCCeEEEEEccCCCccce
Q 016598 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFS-PLAIHTRNLLADPRCTLVVQIPGWSGLSN 221 (386)
Q Consensus 143 e~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS-~la~HtrNL~~dpRvSL~V~~~~~~~~a~ 221 (386)
+++-++|.++...++|... +|.||+.-..|+.|....-+|+++ +...|.+-+..|++|..+|..+.......
T Consensus 3 ~rI~~flkkq~v~Tw~~~~-------e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~i 75 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ-------EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALI 75 (145)
T ss_pred hHHHHHHHhhheeeeeeec-------CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeee
Confidence 4567889999999999875 899999999999997666666665 55679999999999999998776555667
Q ss_pred eEEEEEEEEEeCCcchHHHHHHHHHHhCCCCCCCCCCceEEEEEeeeeeEEEec---CCcc-eEEeccc
Q 016598 222 ARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIG---GFGT-VAWVDVK 286 (386)
Q Consensus 222 ~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V~~Vg---GFG~-a~~V~~e 286 (386)
..|...|....++.++.+.++++|.+|+|.++... -.+|.++ .+.|.|++ |||+ .+|.-++
T Consensus 76 kGVQfkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqle-L~~ikftdNaLG~~kklew~r~~ 140 (145)
T COG3787 76 KGVQFKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLE-LDEIKFTDNALGFGKKLEWLRGS 140 (145)
T ss_pred eeeeeeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEee-eeeEEeecccccccceEEEeccc
Confidence 88999999999999999999999999999987443 3467786 78888875 7885 6776554
No 13
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.61 E-value=9.6e-07 Score=82.15 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=67.0
Q ss_pred HHHHHhCCeEEEEeecCcccCCCCCcceeeeeeee-eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEE
Q 016598 146 RNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARV 224 (386)
Q Consensus 146 RtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya-~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RV 224 (386)
+.-+...+.++|||++ .+|.|...+|.+- .|.+| ++|+....+.+.++|.+||+|+|++..+. ....|
T Consensus 21 ~~~~~~~~~~~lATv~------~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~----~~~qv 89 (195)
T PRK05679 21 KAELNDPNAMTLATVD------EDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS----LERQV 89 (195)
T ss_pred hcCCCCCceEEEEeeC------CCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC----CCEEE
Confidence 3445567788999997 4899999999884 67656 89999999999999999999999998764 23588
Q ss_pred EEEEEEEeCCcch
Q 016598 225 TIFGDIFPLPEHQ 237 (386)
Q Consensus 225 TL~G~a~~v~~ee 237 (386)
.|.|.++.+++++
T Consensus 90 rv~G~a~~~~~~~ 102 (195)
T PRK05679 90 RVEGRVEKVSAEE 102 (195)
T ss_pred EEEEEEEEeCHHH
Confidence 9999999988754
No 14
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.60 E-value=1.6e-06 Score=78.93 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC---
Q 016598 140 RPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW--- 216 (386)
Q Consensus 140 ~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~--- 216 (386)
.-.+.++.+|+.+.+|.||+.. +|.||+.++.|+.++ |.+||+.+....+...|..+|.|+|.|.+...
T Consensus 11 ~~~~~i~~~l~~~~~~~La~~~-------~~~PyivP~~y~~~~-~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~ 82 (166)
T COG3467 11 MSDEEIDAILAAGRVGRLAFAG-------DGQPYVVPLNYGYEG-GHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVL 82 (166)
T ss_pred CCHHHHHHHHhhCCEEEEEEcC-------CCCcEEEEeEeEEeC-CeEEEEeCCcchhhHHhhcCCcEEEEEEcccccee
Confidence 3468899999999999999986 788999999999984 77999999999999999999999999988751
Q ss_pred -----CccceeEEEEEEEEEeCCcchH
Q 016598 217 -----SGLSNARVTIFGDIFPLPEHQQ 238 (386)
Q Consensus 217 -----~~~a~~RVTL~G~a~~v~~ee~ 238 (386)
.......|.++|+++.+++.+.
T Consensus 83 ~~~~~~s~~y~SVvv~G~~~~l~~~~~ 109 (166)
T COG3467 83 KSPFNSSRNYRSVVVFGRAEELSDLEE 109 (166)
T ss_pred cccccCCcceEEEEEEeEEEEcCChHH
Confidence 3567789999999999998764
No 15
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.46 E-value=2.6e-08 Score=95.11 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=109.5
Q ss_pred CCCCChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccC
Q 016598 136 HGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPG 215 (386)
Q Consensus 136 ~~~p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~ 215 (386)
...|.....++.+.....+..|||+. .+|.|-+|..+|+.+ ++.++||+|..++|++|+..+|.+|+++.++.
T Consensus 78 ~~~~Rl~~e~~afr~~~~sv~lat~~------~~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iede 150 (245)
T COG0748 78 LALPRLTLEIEAFRLEFDSVALATLR------ERGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDE 150 (245)
T ss_pred hhccchhHHHHHHHhccchHHHhhhh------hcCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCc
Confidence 34577788899999999999999997 589999999999998 47799999999999999999999999988775
Q ss_pred C---CccceeEEEEEEEEEeCCcch-HHHHHHHHHHhCCC-CC-CCCCCceEEEEEeeeeeEEEecCCcceEEecccch
Q 016598 216 W---SGLSNARVTIFGDIFPLPEHQ-QEWAHKQYIAKHHQ-GP-SQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEY 288 (386)
Q Consensus 216 ~---~~~a~~RVTL~G~a~~v~~ee-~~~a~~~yl~rhP~-a~-~~~~~Df~~~rL~~~e~V~~VgGFG~a~~V~~eey 288 (386)
. ....+.|++-.-.+..++..+ ...+...+..++.. .. .-..+||.++.++ +.+..|+-|||.++.++.+.-
T Consensus 151 a~a~s~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~-~~~gl~v~gFgqa~~~~~d~~ 228 (245)
T COG0748 151 AKAKSAFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLT-PGQGLFVKGFGQAYAISGDGR 228 (245)
T ss_pred hhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeecc-CCCceEEeccchhhccccchh
Confidence 3 234445555544444444321 12233344444444 33 3457899999998 999999999998887776543
No 16
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.15 E-value=6e-05 Score=71.46 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=63.7
Q ss_pred HhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEEEEEE
Q 016598 150 EQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGD 229 (386)
Q Consensus 150 ~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~G~ 229 (386)
...+..+|||++ .+|.|.+-+|.+-...++.++|+....+.+.++|.+||+|+|++..+. ....|.|.|.
T Consensus 47 ~~~~~~~LaTvd------~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~----~~~qvrv~G~ 116 (217)
T TIGR00558 47 TEPNAMTLSTVD------ESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPD----LERQVRVEGK 116 (217)
T ss_pred CCCceEEEEEEC------CCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCC----CCEEEEEEEE
Confidence 346678999997 489999998877543345699999999999999999999999998764 2578999999
Q ss_pred EEeCCcch
Q 016598 230 IFPLPEHQ 237 (386)
Q Consensus 230 a~~v~~ee 237 (386)
++.+++++
T Consensus 117 a~~~~~~~ 124 (217)
T TIGR00558 117 VEKLPREE 124 (217)
T ss_pred EEECCHHH
Confidence 99987753
No 17
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.09 E-value=3.8e-05 Score=68.10 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCC-CCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCcc
Q 016598 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM-GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGL 219 (386)
Q Consensus 141 pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~d-G~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~ 219 (386)
.......+++..+.|+|+|+. .+|+|..-++.|--|+. |.+||.....+..+..|+.||+|++.+..++.
T Consensus 6 ~~~~~~~~~e~~kv~~l~tv~------~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~--- 76 (145)
T COG3871 6 ALQALAELLEGSKVGMLATVQ------ENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH--- 76 (145)
T ss_pred HHHHHHHHHhhCceEEEEEec------CCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---
Confidence 456677899999999999986 47899998887554433 88999988889999999999999999988765
Q ss_pred ceeEEEEEEEEEeCCcchH-HHH-HHHHHHhCCCCCCCCCCceEEEEEeeeeeEEEec
Q 016598 220 SNARVTIFGDIFPLPEHQQ-EWA-HKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIG 275 (386)
Q Consensus 220 a~~RVTL~G~a~~v~~ee~-~~a-~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V~~Vg 275 (386)
..-|.|.|.++.+++.+. +++ ...+..-||.. .+-+++.+.+++ +++|.|-.
T Consensus 77 -~~fv~v~Gtael~~dra~~d~~W~~~~~~wFe~G--kedP~l~~Lkv~-~e~i~yw~ 130 (145)
T COG3871 77 -DAFVEVSGTAELVEDRAKIDELWTSVLEAWFEQG--KEDPDLTMLKVT-AEDIDYWN 130 (145)
T ss_pred -cceEEEEEEEEeeccHHHHHHhhhhhHHHHHhcC--CCCCCeEEEEEc-hhHhHHHh
Confidence 578999999999988642 222 11122223333 345799999997 89877653
No 18
>PRK06733 hypothetical protein; Provisional
Probab=97.92 E-value=0.00035 Score=62.74 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeee--eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC
Q 016598 139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA--PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW 216 (386)
Q Consensus 139 p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya--~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~ 216 (386)
+...++...+|+.....+|+|++ .++|.|..+.+.++ .| +..+.|.....+...+||++||+++|.+.+++
T Consensus 7 ~~Lt~el~~~L~~~~~~~laTv~-----kedG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~- 79 (151)
T PRK06733 7 PTLTEDLVQLLRKERIVTLATTD-----FEKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANE- 79 (151)
T ss_pred hhcCHHHHHHHcCCceEEEEEEc-----cCCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCC-
Confidence 55678889999999999999997 24899999998754 46 58889999999999999999999999999875
Q ss_pred CccceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCCCCCCCceEEEEEeeeeeEEEecCCcc
Q 016598 217 SGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGT 279 (386)
Q Consensus 217 ~~~a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V~~VgGFG~ 279 (386)
.-.++.|.++.+.+. .+ ..| -...++.++ |++|+=+--+|.
T Consensus 80 -----~~yqIkG~a~i~~e~-ie--------~vp-------lk~s~vei~-I~eVrdv~FyGa 120 (151)
T PRK06733 80 -----SVYSISGAAEILTDR-ME--------GVP-------LKLALIEVN-VEEVRDVMFYGA 120 (151)
T ss_pred -----cEEEEEEEEEEEeee-cc--------ccc-------ceEEEEEEE-EEEEEEeeeccc
Confidence 338899999877642 00 111 147889997 888887766674
No 19
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=97.63 E-value=0.0011 Score=62.10 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=83.9
Q ss_pred HHHHhCCeEEEEeecCcccCCCCCcceeeeeeeee-CCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEE
Q 016598 147 NLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAP-DSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVT 225 (386)
Q Consensus 147 tLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~-D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVT 225 (386)
.=+...+-.+|||++ .+|.|.+-+|..-- |. ..++|+..-.|.+.+.|.+||.+++++.-.. -...|.
T Consensus 41 ~~~~ePnAm~lATvd------~~G~P~~R~VLLK~~De-rGfvFyTN~~S~Kg~eLa~np~Aal~F~W~~----L~RQVr 109 (214)
T COG0259 41 AEVNEPNAMTLATVD------EQGRPSSRIVLLKELDE-RGFVFYTNYGSRKGRELAANPYAALLFPWKE----LERQVR 109 (214)
T ss_pred cccCCCceeEEEeec------CCCCceeeEEEecccCC-CcEEEEeccCCcchhhHhhCcceeEEecchh----ccceEE
Confidence 335666788999997 48999999987663 54 4489999988999999999999999997543 124899
Q ss_pred EEEEEEeCCcchHH------------------------------HHHHHHHHhCCCCCCCCCCceEEEEEeeeeeEEEec
Q 016598 226 IFGDIFPLPEHQQE------------------------------WAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIG 275 (386)
Q Consensus 226 L~G~a~~v~~ee~~------------------------------~a~~~yl~rhP~a~~~~~~Df~~~rL~~~e~V~~Vg 275 (386)
+.|.+++|++++.+ ...+.|.++|+......-+.+.-||+. |+.|-|=.
T Consensus 110 v~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P~~WgG~ri~-p~~iEFWq 188 (214)
T COG0259 110 VEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRPPHWGGFRIV-PESIEFWQ 188 (214)
T ss_pred EeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCCCCccceEee-eeEEEEec
Confidence 99999999886431 122344555555541112345778886 77777654
No 20
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=97.59 E-value=0.0014 Score=68.82 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=64.2
Q ss_pred HHhCCeEEEEeecCcccCCCCCcceeeeeeee-eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEEEE
Q 016598 149 MEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (386)
Q Consensus 149 L~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya-~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~ 227 (386)
+...+..+|||++ .+|.|.+-+|-+- +|.+| ++|+..-.|++.++|.+||+++|++..+. ....|.+.
T Consensus 286 ~~ep~am~LATvd------~~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~----~~rQvRv~ 354 (462)
T PLN03049 286 LREPNAMTLATAG------EDGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDG----LHRQVRVE 354 (462)
T ss_pred CCCCCeeEEEEEC------CCCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCC----CCEEEEEE
Confidence 4567888999997 4899999998654 56555 59999899999999999999999998764 34689999
Q ss_pred EEEEeCCcch
Q 016598 228 GDIFPLPEHQ 237 (386)
Q Consensus 228 G~a~~v~~ee 237 (386)
|.++.+++++
T Consensus 355 G~a~~~~~~~ 364 (462)
T PLN03049 355 GSVEKVSEEE 364 (462)
T ss_pred EEEEECCHHH
Confidence 9999998653
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0072 Score=52.30 Aligned_cols=111 Identities=11% Similarity=-0.015 Sum_probs=84.5
Q ss_pred HHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeE
Q 016598 144 AVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNAR 223 (386)
Q Consensus 144 ~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~R 223 (386)
++-.+|..+..+.|||+. +|.|-.-+..+.....+.+||+....-.-++.|+++|.+++.-.+... .-
T Consensus 3 d~leFLken~~~~laTve-------~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg-----~~ 70 (132)
T COG5015 3 DPLEFLKENKSVALATVE-------DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDG-----VM 70 (132)
T ss_pred cHHHHHHhCCcEEEEEcc-------CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCc-----eE
Confidence 456789999999999986 898888777777666688888888778889999999999997655432 44
Q ss_pred EEEEEEEEeCCcchHHHHHHHHHHhCCCCC--C--CCCCceEEEEEeeeee
Q 016598 224 VTIFGDIFPLPEHQQEWAHKQYIAKHHQGP--S--QQWGNFYYFRMQDISD 270 (386)
Q Consensus 224 VTL~G~a~~v~~ee~~~a~~~yl~rhP~a~--~--~~~~Df~~~rL~~~e~ 270 (386)
|.|+|+++.+++- .+.++.++.+|..+ | .+-+-|.+|.++ ...
T Consensus 71 vrlrg~a~f~~ni---elkk~ale~yP~Lkeiy~tddnpifevfyld-~~e 117 (132)
T COG5015 71 VRLRGRAEFVENI---ELKKLALEIYPVLKEIYPTDDNPIFEVFYLD-SGE 117 (132)
T ss_pred EEEeeeEEeccch---HHHHHHhhhchhhHhhccCCCCCEEEEEEEe-ecc
Confidence 5699999998874 36667888889875 2 233457777775 443
No 22
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.05 E-value=0.0066 Score=52.00 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=65.3
Q ss_pred CeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCC-----chhhhhhhcCCCeEEEEEccCCCccceeEEEEE
Q 016598 153 RFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPL-----AIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (386)
Q Consensus 153 ~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~l-----a~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~ 227 (386)
..+.|.|.. +..|.|+.+++.|..++ |..++..|.- ..-++||+++|+|++.+.. -+..
T Consensus 8 p~~lL~t~G-----RkSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g----------~~~~ 71 (113)
T TIGR00026 8 PVLLLTTTG-----RKSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG----------KTFV 71 (113)
T ss_pred CEEEEEECC-----CCCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC----------EEEE
Confidence 466777765 46899999999999885 5566654432 4458999999999998721 1478
Q ss_pred EEEEeCCcchHHHHHHHHHHhCCCC
Q 016598 228 GDIFPLPEHQQEWAHKQYIAKHHQG 252 (386)
Q Consensus 228 G~a~~v~~ee~~~a~~~yl~rhP~a 252 (386)
+.++.++++|.+.+...|.+++|.-
T Consensus 72 ~~ar~v~~~e~~~~~~~~~~~~p~~ 96 (113)
T TIGR00026 72 ATARLVSGDERDQLWAGVVRLYPRY 96 (113)
T ss_pred EEEEECCchhHHHHHHHHHHHCcCH
Confidence 8999999988888888999999864
No 23
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=96.85 E-value=0.017 Score=61.66 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=62.4
Q ss_pred hCCeEEEEeecCcccCCCCCcceeeeeeee-eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCCCccceeEEEEEEE
Q 016598 151 QARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGD 229 (386)
Q Consensus 151 ~a~~a~LATv~~~~~~~~dG~P~gS~V~ya-~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~G~ 229 (386)
..+..+|||++ .+|.|.+-+|-+- +|. ..++|+..-.|.+.+.|.+||+++|++.... ....|.+.|.
T Consensus 370 eP~Am~LATv~------~~G~P~~RtVlLk~~d~-~g~~F~Tn~~S~K~~el~~Np~aal~F~w~~----l~rQVRi~G~ 438 (544)
T PLN02918 370 EPNAMALSTAN------KDGKPSSRMVLLKGVDK-NGFVWYTNYESQKGSDLSENPSAALLFYWEE----LNRQVRVEGS 438 (544)
T ss_pred CCccceEEeeC------CCCCeeeEEEEEeEEcC-CceEEEECCCChhHHHHHhCCcEEEEeeecc----ccEEEEEEEE
Confidence 45667899997 4899999888764 465 4577888889999999999999999998764 3468899999
Q ss_pred EEeCCcch
Q 016598 230 IFPLPEHQ 237 (386)
Q Consensus 230 a~~v~~ee 237 (386)
++.+++++
T Consensus 439 v~~~~~~e 446 (544)
T PLN02918 439 VQKVPESE 446 (544)
T ss_pred EEECCHHH
Confidence 99998764
No 24
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=96.52 E-value=0.027 Score=51.52 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCC----CCCeEEEeCCCchhhhhhhcCCCeEEEEEccC
Q 016598 140 RPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDS----MGHPIFSFSPLAIHTRNLLADPRCTLVVQIPG 215 (386)
Q Consensus 140 ~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~----dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~ 215 (386)
.-.+.++.|+++..+|+|.|.. +|.|.+|.++|..+. .|.++.++..--++.+.|..+..|-+.|..+.
T Consensus 10 ~d~~~l~~~i~~~pfa~Lvt~~-------~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~ 82 (169)
T PF04299_consen 10 EDPEELRAFIRAHPFATLVTNG-------DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPH 82 (169)
T ss_dssp --HCHHHHHHHHS-EEEEEEEE-------TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEE
T ss_pred CCHHHHHHHHHhCCcEEEEEcC-------CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCC
Confidence 3456789999999999999965 677999999999874 57777788888889999988888888887653
Q ss_pred ----CCcc-------------ceeEEEEEEEEEeCCcch-HHHHHHHHHHhC
Q 016598 216 ----WSGL-------------SNARVTIFGDIFPLPEHQ-QEWAHKQYIAKH 249 (386)
Q Consensus 216 ----~~~~-------------a~~RVTL~G~a~~v~~ee-~~~a~~~yl~rh 249 (386)
++.+ ....|-+.|+++.+++.+ ..+..++..++|
T Consensus 83 aYISPsWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~~~ 134 (169)
T PF04299_consen 83 AYISPSWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTAHF 134 (169)
T ss_dssp EEE-CCCS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHH
T ss_pred eeECchhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHHHh
Confidence 1111 457899999999996544 444444444443
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=96.51 E-value=0.013 Score=51.39 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=59.3
Q ss_pred eEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCC-----CchhhhhhhcCCCeEEEEEccCCCccceeEEEEEE
Q 016598 154 FAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSP-----LAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFG 228 (386)
Q Consensus 154 ~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~-----la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~G 228 (386)
.+.|.|.. +..|.|+.+++.|..++ |+.++..+. ...=++||+++|.|.+.+. .-+..+
T Consensus 27 ~~lLtt~G-----RkSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~----------g~~~~~ 90 (132)
T PF04075_consen 27 VLLLTTTG-----RKSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG----------GRRRRV 90 (132)
T ss_dssp EEEEEEE------TTT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET----------TEEEEE
T ss_pred EEEEEECC-----CCCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC----------CEEEEE
Confidence 67777775 56899999999998874 666666662 3456899999999998762 235667
Q ss_pred EEEeCCcchHHHHHHHHHHhCCC
Q 016598 229 DIFPLPEHQQEWAHKQYIAKHHQ 251 (386)
Q Consensus 229 ~a~~v~~ee~~~a~~~yl~rhP~ 251 (386)
.++.+++++.+.+.+++.+.+|.
T Consensus 91 ~a~~~~~~er~~~~~~~~~~~p~ 113 (132)
T PF04075_consen 91 RAREVTDDERARLWARLVAAYPG 113 (132)
T ss_dssp EEEEE-HHHHHHHHHHHHHHSTH
T ss_pred EEEEcCchHHHHHHHHHHHHCcC
Confidence 77888887777787888888876
No 26
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=95.67 E-value=0.029 Score=52.61 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=64.7
Q ss_pred CeEEEEeecCcccCCCCCcceeeeeeee-eCCCCCeEEEeC-CCchhhhhhhcCCCeEEEEEccCCCccceeEEEEEEEE
Q 016598 153 RFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFS-PLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDI 230 (386)
Q Consensus 153 ~~a~LATv~~~~~~~~dG~P~gS~V~ya-~D~dG~pi~lvS-~la~HtrNL~~dpRvSL~V~~~~~~~~a~~RVTL~G~a 230 (386)
...+|||+. .+|.|-.-+|.|- .|.+|- +|++. .-+.+.+||..||.++|++.-+.- ...|.+.|.+
T Consensus 57 ~am~LsT~~------~d~rvssRmvLlKgl~~~gf-~fytn~~~srk~kdL~~NP~Aal~Fyw~~l----~rQVRveG~v 125 (228)
T KOG2586|consen 57 NAMTLSTAD------KDGRVSSRMVLLKGLDHDGF-VFYTNYGTSRKGKDLQENPNAALLFYWEDL----NRQVRVEGIV 125 (228)
T ss_pred hheeehhcc------ccCCcceeeeeeecccCCCe-EEEeeccccccccccccCCcceEEEeehhc----cceeEEEecc
Confidence 345899986 4899998888776 577774 55555 478999999999999999987642 2488999999
Q ss_pred EeCCcchHHHHHHHHHHhCCCC
Q 016598 231 FPLPEHQQEWAHKQYIAKHHQG 252 (386)
Q Consensus 231 ~~v~~ee~~~a~~~yl~rhP~a 252 (386)
+.+++++. ++|...-|-+
T Consensus 126 e~l~~ee~----e~yf~srp~~ 143 (228)
T KOG2586|consen 126 EKLPREEA----EAYFKSRPRA 143 (228)
T ss_pred ccCCHHHH----HHHHhcCcch
Confidence 99998654 5676665533
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=91.39 E-value=1.2 Score=37.34 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=51.8
Q ss_pred HhCCeEEEEeecCcccCCCCCcceeeeeeee-eCCC-----CCeEEEeCCCchhhhhhh-cCCCeEEEEEccCCCcccee
Q 016598 150 EQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSM-----GHPIFSFSPLAIHTRNLL-ADPRCTLVVQIPGWSGLSNA 222 (386)
Q Consensus 150 ~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya-~D~d-----G~pi~lvS~la~HtrNL~-~dpRvSL~V~~~~~~~~a~~ 222 (386)
...++.+|||++. .+|.|.+=.|-|- ++.+ ..+.|+...-+.++..|. .||++++++..+.. .-
T Consensus 18 ~~~~~~~LATv~~-----~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~~----~~ 88 (100)
T PF12766_consen 18 HPFRYFQLATVDP-----PDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPET----RE 88 (100)
T ss_dssp CGGGCEEEEEEE------TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECCC----TE
T ss_pred CCCceeEEEEecC-----CCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCCc----cE
Confidence 4578899999971 3788977555432 3333 446666667789999999 99999999998763 35
Q ss_pred EEEEEEEEEeC
Q 016598 223 RVTIFGDIFPL 233 (386)
Q Consensus 223 RVTL~G~a~~v 233 (386)
.+-|.|++..+
T Consensus 89 Q~Ri~G~a~ii 99 (100)
T PF12766_consen 89 QFRIRGRASII 99 (100)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 66677776654
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=89.65 E-value=3.1 Score=39.23 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCC----CCeEEEeCCCchhhhhhhcCCCeEEEEEccC
Q 016598 140 RPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM----GHPIFSFSPLAIHTRNLLADPRCTLVVQIPG 215 (386)
Q Consensus 140 ~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~d----G~pi~lvS~la~HtrNL~~dpRvSL~V~~~~ 215 (386)
+-.+....|++...+|+|.|.. .|.|+++.++|.++.. |.++.+++..-.|.+-+.+...|=.+++.++
T Consensus 10 ~d~~~L~a~ir~~pfgtlvt~~-------~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpd 82 (209)
T COG2808 10 EDPEVLHALIRAHPFGTLVTSG-------GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPD 82 (209)
T ss_pred CCHHHHHHHHHhCCceEEEecc-------CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCC
Confidence 4567889999999999999965 7899999999998643 4455555555668888876555655565543
Q ss_pred ----CCc-------------cceeEEEEEEEEEeCCcch
Q 016598 216 ----WSG-------------LSNARVTIFGDIFPLPEHQ 237 (386)
Q Consensus 216 ----~~~-------------~a~~RVTL~G~a~~v~~ee 237 (386)
|.. =....|-..|+++.+++++
T Consensus 83 AYISP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~ 121 (209)
T COG2808 83 AYISPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDE 121 (209)
T ss_pred cccCcccccccccCCCcCCCcceEEEEEecceeeeccHH
Confidence 111 1446899999999999986
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=82.72 E-value=8.1 Score=35.59 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCC-CCeEEEeCCC-chhh-hhhhcCCCeEEEEEccC
Q 016598 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM-GHPIFSFSPL-AIHT-RNLLADPRCTLVVQIPG 215 (386)
Q Consensus 143 e~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~d-G~pi~lvS~l-a~Ht-rNL~~dpRvSL~V~~~~ 215 (386)
..+|+++....++.|+|++ .+|.|-....+|+...| +.+.+.+.+. ..++ +||..||++++......
T Consensus 32 ~~~~e~~~~~~~~~laT~d------~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~ 101 (173)
T COG3576 32 NHYREFIQTSQLAALATVD------KDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRN 101 (173)
T ss_pred HhhhhhhccccEEEEEEec------cCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccC
Confidence 3467777779999999997 47999888889875433 4444455544 4444 66999999999987763
No 30
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=27.98 E-value=2.5e+02 Score=20.83 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred EEEEeecCcccCCCCCcceeeeeeeeeCCCC--CeEEEeCCCchhh-hhhhcCCCeEEEEEcc
Q 016598 155 AHLCTVMSRMHHRREGYPFGSLVDFAPDSMG--HPIFSFSPLAIHT-RNLLADPRCTLVVQIP 214 (386)
Q Consensus 155 a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG--~pi~lvS~la~Ht-rNL~~dpRvSL~V~~~ 214 (386)
|++...+. ..|| .|....+| +++|+.+.+.... +.|...-+|++.+...
T Consensus 3 G~V~~~~~-----~kgy------GFI~~~~~~~diFfh~s~~~~~~~~~l~~G~~V~F~~~~~ 54 (66)
T PF00313_consen 3 GTVKWFDD-----EKGY------GFITSDDGGEDIFFHISDLSGNGFRSLKEGDRVEFEVEEG 54 (66)
T ss_dssp EEEEEEET-----TTTE------EEEEETTSSSEEEEEGGGBCSSSSTS--TTSEEEEEEEEC
T ss_pred EEEEEEEC-----CCCc------eEEEEcccceeEEeccccccccccccCCCCCEEEEEEEEC
Confidence 56666652 3464 34432233 6888889888776 8888999999998883
No 31
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=21.35 E-value=2.7e+02 Score=22.12 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHh--CCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEE
Q 016598 139 PRPALAVRNLMEQ--ARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLV 210 (386)
Q Consensus 139 p~pAe~ARtLL~~--a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~ 210 (386)
.-|.+.+..|-.. .+.-+-+|+ +|++|-+-+ ....+|..+|.++..-++.-.+...-.+++.
T Consensus 16 ~vP~~v~~~l~~~~~g~v~V~~tI--------~g~~~~~sl--~p~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~ 79 (80)
T PF08922_consen 16 EVPFDVAEELGEGGWGRVPVRGTI--------DGHPWRTSL--FPMGNGGYILPVKAAVRKAIGKEAGDTVEVT 79 (80)
T ss_dssp E--S-HHHHH--S--S-EEEEEEE--------TTEEEEEEE--EESSTT-EEEEE-HHHHHHHT--TTSEEEEE
T ss_pred EeCHHHHHHhccccCCceEEEEEE--------CCEEEEEEE--EECCCCCEEEEEcHHHHHHcCCCCCCEEEEE
Confidence 3455566666656 677788887 689988743 3366798888887666666666655555554
Done!