Query 016600
Match_columns 386
No_of_seqs 230 out of 1303
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.8E-47 1.3E-51 380.0 33.8 290 4-309 122-430 (431)
2 cd05489 xylanase_inhibitor_I_l 100.0 5.3E-46 1.2E-50 365.4 30.8 290 10-305 26-361 (362)
3 cd05472 cnd41_like Chloroplast 100.0 4E-44 8.7E-49 344.1 30.1 270 8-307 18-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 1.5E-43 3.2E-48 352.9 29.3 289 7-308 88-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.4E-43 5.2E-48 342.8 26.0 261 5-308 42-326 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.7E-42 3.7E-47 336.6 25.5 259 3-304 45-325 (325)
7 cd05486 Cathespin_E Cathepsin 100.0 1.1E-42 2.4E-47 336.7 23.7 258 3-304 37-316 (316)
8 cd05478 pepsin_A Pepsin A, asp 100.0 2E-42 4.3E-47 335.0 24.6 255 3-304 47-317 (317)
9 cd05477 gastricsin Gastricsins 100.0 5.6E-42 1.2E-46 332.0 25.8 256 3-305 40-318 (318)
10 cd05487 renin_like Renin stimu 100.0 2.3E-41 4.9E-46 328.9 25.0 258 3-305 47-326 (326)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.6E-41 3.4E-46 329.2 23.8 238 38-304 64-320 (320)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.2E-41 4.8E-46 329.4 24.7 256 6-304 53-329 (329)
13 cd05473 beta_secretase_like Be 100.0 6.2E-41 1.3E-45 330.6 27.7 287 5-321 38-361 (364)
14 PTZ00165 aspartyl protease; Pr 100.0 6.5E-41 1.4E-45 338.6 28.1 265 2-311 156-452 (482)
15 cd06098 phytepsin Phytepsin, a 100.0 4.1E-41 8.9E-46 325.9 25.5 247 3-304 48-317 (317)
16 cd05475 nucellin_like Nucellin 100.0 1.1E-39 2.5E-44 309.4 27.5 245 8-307 19-273 (273)
17 cd05476 pepsin_A_like_plant Ch 100.0 8.7E-40 1.9E-44 308.8 24.5 217 40-307 31-265 (265)
18 PTZ00147 plasmepsin-1; Provisi 100.0 1.8E-38 4E-43 318.5 26.4 256 4-306 177-450 (453)
19 cd05474 SAP_like SAPs, pepsin- 100.0 2.1E-38 4.5E-43 303.5 23.1 238 41-305 31-295 (295)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.3E-38 1.2E-42 314.7 26.4 240 38-306 192-449 (450)
21 cd06097 Aspergillopepsin_like 100.0 3.8E-37 8.2E-42 292.8 22.7 226 5-304 39-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 6.5E-38 1.4E-42 302.3 12.1 257 5-305 41-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.4E-34 7.4E-39 271.7 23.5 240 9-304 18-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 3.9E-25 8.5E-30 193.5 11.8 142 161-304 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.8 8.8E-21 1.9E-25 166.4 9.3 128 5-141 30-164 (164)
26 cd05470 pepsin_retropepsin_lik 99.0 1.1E-09 2.4E-14 89.0 7.9 57 38-104 53-109 (109)
27 TIGR02281 clan_AA_DTGA clan AA 95.9 0.15 3.2E-06 42.2 11.2 36 159-202 9-44 (121)
28 cd05479 RP_DDI RP_DDI; retrope 95.4 0.16 3.4E-06 42.2 9.6 32 270-301 92-123 (124)
29 TIGR03698 clan_AA_DTGF clan AA 94.3 0.24 5.2E-06 40.0 7.6 90 180-300 16-107 (107)
30 PF08284 RVP_2: Retroviral asp 90.5 2.2 4.9E-05 35.9 8.9 29 277-305 104-132 (135)
31 PF13650 Asp_protease_2: Aspar 84.7 1.3 2.9E-05 33.5 3.8 29 169-202 3-31 (90)
32 cd05484 retropepsin_like_LTR_2 82.1 2.2 4.8E-05 32.9 4.1 29 169-202 5-33 (91)
33 PF13975 gag-asp_proteas: gag- 81.8 2.4 5.1E-05 31.5 4.0 29 169-202 13-41 (72)
34 cd05483 retropepsin_like_bacte 81.2 3 6.5E-05 31.9 4.6 29 169-202 7-35 (96)
35 cd06094 RP_Saci_like RP_Saci_l 80.3 6.8 0.00015 30.5 6.0 80 179-289 8-87 (89)
36 cd05481 retropepsin_like_LTR_1 71.5 33 0.00071 26.7 8.1 31 169-203 3-33 (93)
37 cd06095 RP_RTVL_H_like Retrope 69.9 6.2 0.00013 30.2 3.6 29 169-202 3-31 (86)
38 COG5550 Predicted aspartyl pro 66.0 4.6 9.9E-05 33.3 2.1 24 277-300 94-117 (125)
39 PF12384 Peptidase_A2B: Ty3 tr 64.9 36 0.00078 29.7 7.4 23 180-202 45-67 (177)
40 KOG0012 DNA damage inducible p 64.7 48 0.001 32.5 9.0 107 168-307 239-348 (380)
41 PF00077 RVP: Retroviral aspar 60.3 8.3 0.00018 30.0 2.7 26 169-199 10-35 (100)
42 COG3577 Predicted aspartyl pro 59.4 18 0.00039 32.7 4.8 36 159-202 103-138 (215)
43 PF02160 Peptidase_A3: Caulifl 57.3 14 0.00031 33.3 3.9 29 276-305 90-118 (201)
44 cd05480 NRIP_C NRIP_C; putativ 56.2 82 0.0018 25.2 7.4 29 269-297 75-103 (103)
45 PF09668 Asp_protease: Asparty 50.9 19 0.00041 29.9 3.4 30 168-202 28-57 (124)
46 cd05483 retropepsin_like_bacte 50.0 33 0.00072 25.8 4.6 52 40-106 43-94 (96)
47 cd05470 pepsin_retropepsin_lik 40.2 28 0.0006 27.3 2.8 20 179-198 10-29 (109)
48 PF08194 DIM: DIM protein; In 26.1 51 0.0011 21.0 1.6 11 375-385 8-18 (36)
49 cd06096 Plasmepsin_5 Plasmepsi 20.1 93 0.002 29.9 3.0 27 168-197 7-33 (326)
50 cd00303 retropepsin_like Retro 20.0 1.4E+02 0.0031 20.6 3.4 22 180-201 9-30 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.8e-47 Score=380.04 Aligned_cols=290 Identities=24% Similarity=0.426 Sum_probs=236.0
Q ss_pred CCCCCCCCCCCCCCccccCCCcCCCCCC---CCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccE
Q 016600 4 RDLNEYSPSASSTSKHLSCSHRLCDLGT---SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV 80 (386)
Q Consensus 4 ~~~~~f~p~~SsT~~~~~C~~~~C~~~~---~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~ 80 (386)
+..+.|||++|+||+.++|+++.|.... .|... +.|.|.+.|+|| +.++|.+++|+|+|++.... .....++
T Consensus 122 ~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~---~~~v~~~ 196 (431)
T PLN03146 122 QVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGR---PVSFPGI 196 (431)
T ss_pred CCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCC---cceeCCE
Confidence 4578999999999999999999998642 37543 469999999998 77899999999999875321 1246799
Q ss_pred EEeeeeeccCCCCCCCCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecCC-----CCceEEECCCCC---CCCeeeee
Q 016600 81 IIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKD-----DSGRIFFGDQGP---ATQQSTSF 152 (386)
Q Consensus 81 ~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~~-----~~G~i~fGg~d~---~~~~~~p~ 152 (386)
.|||++.+.+.+.. ..+||||||+..+|+++||.. .+.++||+||.+. ..|+|+||+... ..+.|+|+
T Consensus 197 ~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sql~~--~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl 272 (431)
T PLN03146 197 VFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQLGS--SIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPL 272 (431)
T ss_pred EEeCCCCCCCCccC--CCceeEecCCCCccHHHHhhH--hhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEccc
Confidence 99999988776532 468999999999999999975 3556999999642 369999998542 22568999
Q ss_pred eecCCcceeEEEEEeEEEEcCeeecCCC--------ceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccc
Q 016600 153 LASNGKYITYIIGVETCCIGSSCLKQTS--------FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKC 224 (386)
Q Consensus 153 v~~~~~~~~y~V~l~~i~v~~~~~~~~~--------~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 224 (386)
+.... ..+|.|+|++|.||++.+.... ..+||||||++++||+++|++|.++|.++++..........++.
T Consensus 273 ~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (431)
T PLN03146 273 VSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSL 351 (431)
T ss_pred ccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCc
Confidence 75432 4789999999999999876322 36999999999999999999999999998875443333345678
Q ss_pred ccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccCCCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 225 CYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 225 C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
||..... ..+|+|+|+|. |..+.+++++|++.... +.+|+++.... +.||||+.|||++|||||++++||||++
T Consensus 352 C~~~~~~--~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~ 425 (431)
T PLN03146 352 CYSSTSD--IKLPIITAHFT-GADVKLQPLNTFVKVSE--DLVCFAMIPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKP 425 (431)
T ss_pred cccCCCC--CCCCeEEEEEC-CCeeecCcceeEEEcCC--CcEEEEEecCC-CceEECeeeEeeEEEEEECCCCEEeeec
Confidence 9975422 57899999995 78999999999987654 57899998764 5799999999999999999999999999
Q ss_pred CCCCC
Q 016600 305 SNCQD 309 (386)
Q Consensus 305 ~~C~~ 309 (386)
.+|+.
T Consensus 426 ~~C~~ 430 (431)
T PLN03146 426 TDCTK 430 (431)
T ss_pred CCcCc
Confidence 99975
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.3e-46 Score=365.36 Aligned_cols=290 Identities=21% Similarity=0.308 Sum_probs=229.1
Q ss_pred CCCCCCCCccccCCCcCCCCCC--------------CCCCCCCCCceeee-cCCCCceEeEEEEEEEEEeecCCCCcccc
Q 016600 10 SPSASSTSKHLSCSHRLCDLGT--------------SCQNPKQPCPYTMD-YYTENTSSSGLLVEDILHLISGGDNALKN 74 (386)
Q Consensus 10 ~p~~SsT~~~~~C~~~~C~~~~--------------~C~~~~~~c~~~i~-Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~ 74 (386)
+|.+|+||+.++|+++.|.... .|.+ +.|.|... |++| +.++|++++|+|+|+..+......
T Consensus 26 ~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~ 102 (362)
T cd05489 26 DAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLL 102 (362)
T ss_pred CCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCccc
Confidence 3678999999999999998531 3533 45988765 7777 889999999999998642210001
Q ss_pred cccccEEEeeeeeccCCCCCCCCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecCC--CCceEEECCCCC--------
Q 016600 75 SVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKD--DSGRIFFGDQGP-------- 144 (386)
Q Consensus 75 ~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~~--~~G~i~fGg~d~-------- 144 (386)
..+.++.|||+.++....... .+|||||||++.+|++.||..++.++++||+||.+. ..|.|+||+.++
T Consensus 103 ~~~~~~~FGC~~~~~~~~~~~-~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~ 181 (362)
T cd05489 103 VVIFNFVFSCAPSLLLKGLPP-GAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPID 181 (362)
T ss_pred ceeCCEEEEcCCcccccCCcc-ccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhccccccc
Confidence 246799999998864221122 369999999999999999988766789999999864 479999999885
Q ss_pred --CCCeeeeeeecCCcceeEEEEEeEEEEcCeeecC----------CCceEEEeccccceeeCHHHHHHHHHHHHHhccc
Q 016600 145 --ATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQ----------TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVND 212 (386)
Q Consensus 145 --~~~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~----------~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~ 212 (386)
..++|+|++..+....+|.|+|++|.||++.+.. ....+||||||++++||+++|++|.++|.+++..
T Consensus 182 ~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~ 261 (362)
T cd05489 182 LSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR 261 (362)
T ss_pred ccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc
Confidence 3467999987654457999999999999998753 1347999999999999999999999999988764
Q ss_pred cccccc-cccccccccccc----CCCCCCCeEEEEEcC-CceeeecCCeEEEEeecceeeEEEEEEccC---CCceEEcc
Q 016600 213 TITSFE-GYPWKCCYKSSS----QRLPKLPSVKLMFPQ-NNSFVVNNPVFVIYGTQVVTGFCLAIQPVD---GDIGTIGQ 283 (386)
Q Consensus 213 ~~~~~~-~~~~~~C~~~~~----~~~~~~P~i~~~f~g-~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~---~~~~IlG~ 283 (386)
...... ....+.||.... .....+|+|+|+|.| |..|+|++++|++.... +..|++|...+ .+.||||+
T Consensus 262 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~ 339 (362)
T cd05489 262 IPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGG 339 (362)
T ss_pred cCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEee
Confidence 332211 122378997543 224689999999987 79999999999998654 57899998765 35799999
Q ss_pred eeeeeEEEEEecCCCEEEEEcC
Q 016600 284 NFMTGYRVVFDRENLKLGWSHS 305 (386)
Q Consensus 284 ~fl~~~yvvFD~e~~rIGfa~~ 305 (386)
.||+++|++||++++|||||++
T Consensus 340 ~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 340 HQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred heecceEEEEECCCCEeecccC
Confidence 9999999999999999999975
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4e-44 Score=344.09 Aligned_cols=270 Identities=26% Similarity=0.435 Sum_probs=220.5
Q ss_pred CCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeee
Q 016600 8 EYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMK 87 (386)
Q Consensus 8 ~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~ 87 (386)
.+|...|-+|-. |. .| |.|.++|++| +.++|++++|+|+|++. ....++.|||+..
T Consensus 18 ~~DTGSs~~Wv~--c~--------~c------~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~ 73 (299)
T cd05472 18 IVDTGSDLTWVQ--CQ--------PC------CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHD 73 (299)
T ss_pred EecCCCCccccc--CC--------CC------CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCcc
Confidence 467777778873 53 23 8999999998 66799999999999975 1457899999998
Q ss_pred ccCCCCCCCCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecC---CCCceEEECCCCCC--CCeeeeeeecCCcceeE
Q 016600 88 QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDK---DDSGRIFFGDQGPA--TQQSTSFLASNGKYITY 162 (386)
Q Consensus 88 ~~g~~~~~~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~---~~~G~i~fGg~d~~--~~~~~p~v~~~~~~~~y 162 (386)
+++.+. ..+||||||+..++++.||..+ .+++||+||.+ ...|+|+||++|+. .+.|+|++..+....+|
T Consensus 74 ~~~~~~---~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y 148 (299)
T cd05472 74 NEGLFG---GAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFY 148 (299)
T ss_pred CCCccC---CCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeE
Confidence 876543 5699999999999999998764 46899999987 34799999999984 57899997665445799
Q ss_pred EEEEeEEEEcCeeecC-----CCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCC
Q 016600 163 IIGVETCCIGSSCLKQ-----TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLP 237 (386)
Q Consensus 163 ~V~l~~i~v~~~~~~~-----~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P 237 (386)
.|+|++|.||++.+.. ....+||||||++++||+++|++|.+++.++............+..||..++..+..+|
T Consensus 149 ~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P 228 (299)
T cd05472 149 YVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVP 228 (299)
T ss_pred EEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccC
Confidence 9999999999998763 24579999999999999999999999998765432211121233469988776677899
Q ss_pred eEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccC--CCceEEcceeeeeEEEEEecCCCEEEEEcCCC
Q 016600 238 SVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 307 (386)
Q Consensus 238 ~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~--~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~~C 307 (386)
+|+|+|.++..+.+++++|++.... .+.+|+++...+ .+.||||+.|||++|+|||++++|||||+.+|
T Consensus 229 ~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 229 TVSLHFQGGADVELDASGVLYPVDD-SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CEEEEECCCCEEEeCcccEEEEecC-CCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999997689999999999984322 367899988763 46799999999999999999999999999999
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=352.87 Aligned_cols=289 Identities=28% Similarity=0.488 Sum_probs=239.6
Q ss_pred CCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeee
Q 016600 7 NEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGM 86 (386)
Q Consensus 7 ~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~ 86 (386)
+.|+|++||||+.+.|++..|.....|...++.|+|++.|+++ +.++|.+++|+|+|++.. .....++.|||+.
T Consensus 88 ~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~ 161 (398)
T KOG1339|consen 88 PIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGT 161 (398)
T ss_pred CccCccccccccccCCCCccccccccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEcccc-----ccccccEEEEeee
Confidence 3399999999999999999999976665566789999999996 689999999999999953 0356789999999
Q ss_pred eccCCCCCC-CCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecCCC-----CceEEECCCCCCC----CeeeeeeecC
Q 016600 87 KQSGGYLDG-VAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDD-----SGRIFFGDQGPAT----QQSTSFLASN 156 (386)
Q Consensus 87 ~~~g~~~~~-~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~~~-----~G~i~fGg~d~~~----~~~~p~v~~~ 156 (386)
.+.+. ... .++|||||||+..++++.|+...+...++||+||.+.+ .|.|+||+.|+.+ +.|+|++...
T Consensus 162 ~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~ 240 (398)
T KOG1339|consen 162 NNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNP 240 (398)
T ss_pred cCccc-cccccccceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCC
Confidence 99876 333 56799999999999999999988777679999999763 6999999999975 3489997654
Q ss_pred CcceeEEEEEeEEEEcCee------ecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 016600 157 GKYITYIIGVETCCIGSSC------LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSS 230 (386)
Q Consensus 157 ~~~~~y~V~l~~i~v~~~~------~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~ 230 (386)
. .+|.|.+++|.|+++. ......++|+||||++++||+++|++|.++|.+.+.. ......+++.|+....
T Consensus 241 ~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~ 316 (398)
T KOG1339|consen 241 S--TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSIST 316 (398)
T ss_pred C--ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCC
Confidence 3 5999999999999843 2223578999999999999999999999999876411 2223356779998764
Q ss_pred CCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccCC--CceEEcceeeeeEEEEEecC-CCEEEEEc--C
Q 016600 231 QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVDG--DIGTIGQNFMTGYRVVFDRE-NLKLGWSH--S 305 (386)
Q Consensus 231 ~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~~--~~~IlG~~fl~~~yvvFD~e-~~rIGfa~--~ 305 (386)
.. ..+|.|+|+|.+++.|.+++++|++....+... |+++..... ..||||+.||++++++||+. ++||||++ .
T Consensus 317 ~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~ 394 (398)
T KOG1339|consen 317 SG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALT 394 (398)
T ss_pred Cc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccc
Confidence 43 569999999977899999999999987653222 998776643 48999999999999999999 99999999 6
Q ss_pred CCC
Q 016600 306 NCQ 308 (386)
Q Consensus 306 ~C~ 308 (386)
.|.
T Consensus 395 ~c~ 397 (398)
T KOG1339|consen 395 NCS 397 (398)
T ss_pred cCC
Confidence 675
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.4e-43 Score=342.76 Aligned_cols=261 Identities=23% Similarity=0.392 Sum_probs=211.3
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEee
Q 016600 5 DLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGC 84 (386)
Q Consensus 5 ~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~ 84 (386)
..+.|+|++|+|++.+.|++..|.....|.+ +.|+|.+.|++| +.++|.+++|+|+|++..... .+....++.|||
T Consensus 42 ~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~--~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~ 117 (326)
T cd06096 42 MEPPYNLNNSITSSILYCDCNKCCYCLSCLN--NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGC 117 (326)
T ss_pred CCCCcCcccccccccccCCCccccccCcCCC--CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEecc
Confidence 4578999999999999999999976656654 569999999997 779999999999999763210 001234689999
Q ss_pred eeeccCCCCCCCCCceEEecCCCCCC----hHHHHHhcCCC-C--CeEEEeecCCCCceEEECCCCCCC-----------
Q 016600 85 GMKQSGGYLDGVAPDGLIGLGLGEIS----VPSLLAKAGLI-R--NSFSMCFDKDDSGRIFFGDQGPAT----------- 146 (386)
Q Consensus 85 ~~~~~g~~~~~~~~dGIlGLg~~~~S----~~~~L~~~glI-~--~~FSl~l~~~~~G~i~fGg~d~~~----------- 146 (386)
+..+.+.+... ..|||||||+...+ ...+|.+++.+ . ++||+||++. .|+|+||++|+.+
T Consensus 118 ~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~ 195 (326)
T cd06096 118 HTHETNLFLTQ-QATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNK 195 (326)
T ss_pred CccccCccccc-ccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccc
Confidence 99988766544 46999999998643 23346666665 4 9999999975 7999999999754
Q ss_pred ---CeeeeeeecCCcceeEEEEEeEEEEcCee---ecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccc
Q 016600 147 ---QQSTSFLASNGKYITYIIGVETCCIGSSC---LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGY 220 (386)
Q Consensus 147 ---~~~~p~v~~~~~~~~y~V~l~~i~v~~~~---~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~ 220 (386)
+.|+|+.. ..+|.|.+++|.|+++. .......+||||||++++||+++|++|.+++
T Consensus 196 ~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------- 257 (326)
T cd06096 196 VSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------- 257 (326)
T ss_pred cCCceEEeccC----CceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------
Confidence 34666542 37999999999999986 2235678999999999999999999987764
Q ss_pred ccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccCCCceEEcceeeeeEEEEEecCCCEE
Q 016600 221 PWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 221 ~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
|+|+|+|.++..++++|++|++.... ..||+++...+ +.+|||++|||++|+|||++++||
T Consensus 258 ----------------P~i~~~f~~g~~~~i~p~~y~~~~~~--~~c~~~~~~~~-~~~ILG~~flr~~y~vFD~~~~ri 318 (326)
T cd06096 258 ----------------PTITIIFENNLKIDWKPSSYLYKKES--FWCKGGEKSVS-NKPILGASFFKNKQIIFDLDNNRI 318 (326)
T ss_pred ----------------CcEEEEEcCCcEEEECHHHhccccCC--ceEEEEEecCC-CceEEChHHhcCcEEEEECcCCEE
Confidence 88999997689999999999987643 45777766544 689999999999999999999999
Q ss_pred EEEcCCCC
Q 016600 301 GWSHSNCQ 308 (386)
Q Consensus 301 Gfa~~~C~ 308 (386)
|||+++|.
T Consensus 319 Gfa~~~C~ 326 (326)
T cd06096 319 GFVESNCP 326 (326)
T ss_pred eeEcCCCC
Confidence 99999994
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.7e-42 Score=336.65 Aligned_cols=259 Identities=23% Similarity=0.365 Sum_probs=205.0
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
++.++.|+|++|+||+. | .|+|.+.|++| +++|.+++|+|+|++. ...++.|
T Consensus 45 C~~~~~y~~~~SsT~~~--~----------------~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~F 96 (325)
T cd05490 45 CWLHHKYNSSKSSTYVK--N----------------GTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLF 96 (325)
T ss_pred ccCcCcCCcccCcceee--C----------------CcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEE
Confidence 34567888888888876 2 38999999998 6899999999999986 5678999
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCCC----
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ---- 147 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~~---- 147 (386)
||++++++..+....+|||||||++.++ ++++|+++|+| +++||+||.++ ..|+|+||++|++++
T Consensus 97 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l 176 (325)
T cd05490 97 GEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDL 176 (325)
T ss_pred EEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCce
Confidence 9999887643333457999999998654 56899999999 89999999863 269999999998653
Q ss_pred eeeeeeecCCcceeEEEEEeEEEEcCeeec-CCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccc
Q 016600 148 QSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 226 (386)
Q Consensus 148 ~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~-~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~ 226 (386)
.++|+. ...+|.|+|++|.||++... .....+||||||+++++|++++++|.++|... . .....++..|+
T Consensus 177 ~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~-~~~~~~~~~C~ 247 (325)
T cd05490 177 HYVNVT----RKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV----P-LIQGEYMIDCE 247 (325)
T ss_pred EEEEcC----cceEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----c-ccCCCEEeccc
Confidence 455653 24799999999999987543 34568999999999999999999998877431 1 11122334444
Q ss_pred ccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEcc-----CCCceEEcceeeeeEEEEEecCCCEE
Q 016600 227 KSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 227 ~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
....+|+|+|+| +++.++|++++|++.........|+ +++.. ..+.||||+.|||++|+|||++++||
T Consensus 248 -----~~~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~I 321 (325)
T cd05490 248 -----KIPTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRV 321 (325)
T ss_pred -----ccccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEe
Confidence 446799999999 7889999999999876543345786 56542 24579999999999999999999999
Q ss_pred EEEc
Q 016600 301 GWSH 304 (386)
Q Consensus 301 Gfa~ 304 (386)
|||+
T Consensus 322 GfA~ 325 (325)
T cd05490 322 GFAK 325 (325)
T ss_pred eccC
Confidence 9996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-42 Score=336.70 Aligned_cols=258 Identities=20% Similarity=0.334 Sum_probs=204.6
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
++.++.|+|++|+|++. ..|+|++.|++| ++.|.+++|+|+|++. ...++.|
T Consensus 37 C~~~~~y~~~~SsT~~~------------------~~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~f 88 (316)
T cd05486 37 CTKHNRFQPSESSTYVS------------------NGEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQF 88 (316)
T ss_pred cCccceECCCCCccccc------------------CCcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEE
Confidence 34566777777777766 348999999998 6899999999999875 5678999
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCC----C
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT----Q 147 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~----~ 147 (386)
||+..+.+..+....+|||||||++.++ ++++|+++|+| +++||+||.++ ..|+|+||++|+++ +
T Consensus 89 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l 168 (316)
T cd05486 89 AESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQL 168 (316)
T ss_pred EEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccce
Confidence 9998776644444467999999998655 57899999999 89999999863 36999999999875 4
Q ss_pred eeeeeeecCCcceeEEEEEeEEEEcCeeec-CCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccc
Q 016600 148 QSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 226 (386)
Q Consensus 148 ~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~-~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~ 226 (386)
.|+|+. ...+|.|.+++|.|+++.+. .....+||||||+++++|++++++|.+.+.. .. .. .+|
T Consensus 169 ~~~pi~----~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~----~~--~~-----~~~ 233 (316)
T cd05486 169 NWVPVT----VQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGDIKQLQNYIGA----TA--TD-----GEY 233 (316)
T ss_pred EEEECC----CceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHHHHHHHHHhCC----cc--cC-----CcE
Confidence 577764 24799999999999998764 3457899999999999999999998776632 11 11 123
Q ss_pred ccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEcc-----CCCceEEcceeeeeEEEEEecCCCEE
Q 016600 227 KSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 227 ~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
..+|.....+|+|+|+| +++.+++++++|++.........|+ +++.. ..+.||||+.|||++|+|||.+++||
T Consensus 234 ~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~I 312 (316)
T cd05486 234 GVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRV 312 (316)
T ss_pred EEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEe
Confidence 44554456799999999 6799999999999875322245785 66643 23579999999999999999999999
Q ss_pred EEEc
Q 016600 301 GWSH 304 (386)
Q Consensus 301 Gfa~ 304 (386)
|||+
T Consensus 313 GfA~ 316 (316)
T cd05486 313 GFAP 316 (316)
T ss_pred eccC
Confidence 9996
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2e-42 Score=335.04 Aligned_cols=255 Identities=22% Similarity=0.368 Sum_probs=207.7
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
++.++.|+|++|+|++.. .|.|++.|++| ++.|.+++|+|+|++. .+.++.|
T Consensus 47 c~~~~~f~~~~Sst~~~~------------------~~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~f 98 (317)
T cd05478 47 CSNHNRFNPRQSSTYQST------------------GQPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIF 98 (317)
T ss_pred ccccCcCCCCCCcceeeC------------------CcEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEE
Confidence 456788888888888873 37899999998 5899999999999986 5678999
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCCC--CceEEECCCCCCC----Cee
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPAT----QQS 149 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~~--~G~i~fGg~d~~~----~~~ 149 (386)
||++.+.+.+......|||||||++.++ ++++|+++|+| +++||+||.+.+ .|+|+||++|+++ +.|
T Consensus 99 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~ 178 (317)
T cd05478 99 GLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNW 178 (317)
T ss_pred EEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEE
Confidence 9998887765444457999999987543 78999999999 899999999864 6899999999865 457
Q ss_pred eeeeecCCcceeEEEEEeEEEEcCeeecC-CCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccccc
Q 016600 150 TSFLASNGKYITYIIGVETCCIGSSCLKQ-TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKS 228 (386)
Q Consensus 150 ~p~v~~~~~~~~y~V~l~~i~v~~~~~~~-~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~ 228 (386)
+|+. ...+|.|.+++|.||++.+.. ....+||||||+++++|++++++|.+++.... . .. .+|..
T Consensus 179 ~p~~----~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~----~-~~-----~~~~~ 244 (317)
T cd05478 179 VPVT----AETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ----N-QN-----GEMVV 244 (317)
T ss_pred EECC----CCcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc----c-cC-----CcEEe
Confidence 7764 247999999999999998863 35689999999999999999999988774321 1 11 12344
Q ss_pred ccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEccC-CCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 229 SSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPVD-GDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 229 ~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
+|.....+|.|+|+| +|+.++|++++|+... ...|+ +++..+ .+.||||++|||++|+|||++++|||||+
T Consensus 245 ~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 245 NCSSISSMPDVVFTI-NGVQYPLPPSAYILQD----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCcCcccCCcEEEEE-CCEEEEECHHHheecC----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 444445799999999 6799999999999865 45676 577654 36799999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.6e-42 Score=332.03 Aligned_cols=256 Identities=20% Similarity=0.362 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
++.++.|+|++|+||+. ..|.|++.|++| ++.|.+++|+|+|++. .+.++.|
T Consensus 40 C~~~~~f~~~~SsT~~~------------------~~~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~F 91 (318)
T cd05477 40 CTNHTKFNPSQSSTYST------------------NGETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEF 91 (318)
T ss_pred ccccCCCCcccCCCceE------------------CCcEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEE
Confidence 45577888888888886 348999999998 5899999999999875 5678999
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCC------CChHHHHHhcCCC-CCeEEEeecCC---CCceEEECCCCCCC----Ce
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGE------ISVPSLLAKAGLI-RNSFSMCFDKD---DSGRIFFGDQGPAT----QQ 148 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~------~S~~~~L~~~glI-~~~FSl~l~~~---~~G~i~fGg~d~~~----~~ 148 (386)
||+....+........+||||||++. .+++++|+++|+| +++||+||++. ..|.|+||++|+++ +.
T Consensus 92 g~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~ 171 (318)
T cd05477 92 GLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIY 171 (318)
T ss_pred EEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceE
Confidence 99998765432223468999999864 3588999999999 89999999875 36999999999876 45
Q ss_pred eeeeeecCCcceeEEEEEeEEEEcCeeec--CCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccc
Q 016600 149 STSFLASNGKYITYIIGVETCCIGSSCLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 226 (386)
Q Consensus 149 ~~p~v~~~~~~~~y~V~l~~i~v~~~~~~--~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~ 226 (386)
|+|+. ...+|.|++++|.|+++.+. .....+||||||+++++|++++++|.+++..+.. . ..+|
T Consensus 172 ~~pv~----~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~-----~~~~ 237 (318)
T cd05477 172 WTPVT----SETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----Q-----YGQY 237 (318)
T ss_pred EEecC----CceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccc-----c-----CCCE
Confidence 77764 24799999999999998764 3456899999999999999999999888744321 1 1245
Q ss_pred ccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEE-EEEEcc------CCCceEEcceeeeeEEEEEecCCCE
Q 016600 227 KSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFC-LAIQPV------DGDIGTIGQNFMTGYRVVFDRENLK 299 (386)
Q Consensus 227 ~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~C-l~i~~~------~~~~~IlG~~fl~~~yvvFD~e~~r 299 (386)
..+|.....+|+|+|+| +++.+.+++++|++.. +..| +++++. +.+.||||+.|||++|+|||++++|
T Consensus 238 ~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 312 (318)
T cd05477 238 VVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQ 312 (318)
T ss_pred EEeCCccccCCcEEEEE-CCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCE
Confidence 55565556899999999 6799999999999875 3456 588653 1246999999999999999999999
Q ss_pred EEEEcC
Q 016600 300 LGWSHS 305 (386)
Q Consensus 300 IGfa~~ 305 (386)
||||++
T Consensus 313 ig~a~~ 318 (318)
T cd05477 313 VGFATA 318 (318)
T ss_pred EeeeeC
Confidence 999985
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.3e-41 Score=328.90 Aligned_cols=258 Identities=22% Similarity=0.377 Sum_probs=203.1
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
+..++.|+|++|+||+. ..|.|++.|++| +++|.+++|+|+|++. .+ ++.|
T Consensus 47 c~~~~~y~~~~SsT~~~------------------~~~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~f 97 (326)
T cd05487 47 CVTHNLYDASDSSTYKE------------------NGTEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMF 97 (326)
T ss_pred hcccCcCCCCCCeeeeE------------------CCEEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEE
Confidence 45677888888888886 348999999998 5999999999999975 22 4789
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCCCe---
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQQ--- 148 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~~~--- 148 (386)
|++....+.-.....+|||||||++..+ ++++|+++|+| +++||+||++. ..|+|+||++|++++.
T Consensus 98 g~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l 177 (326)
T cd05487 98 GEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDF 177 (326)
T ss_pred EEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCce
Confidence 9988754321222356999999997554 67889999999 89999999864 3699999999997753
Q ss_pred -eeeeeecCCcceeEEEEEeEEEEcCeeecC-CCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccc
Q 016600 149 -STSFLASNGKYITYIIGVETCCIGSSCLKQ-TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 226 (386)
Q Consensus 149 -~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~-~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~ 226 (386)
++|+. ...+|.|++++|.|+++.+.. ....+||||||+++++|++++++|.+++... .. .+. |
T Consensus 178 ~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~~--~~~-----y 242 (326)
T cd05487 178 HYINTS----KTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFISGPTSSISKLMEALGAK----ER--LGD-----Y 242 (326)
T ss_pred EEEECC----cCceEEEEecEEEECCEEEecCCCCEEEECCCccchhCcHHHHHHHHHHhCCc----cc--CCC-----E
Confidence 44442 247999999999999998753 4568999999999999999999998877422 11 112 3
Q ss_pred ccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEE-EEEEcc-----CCCceEEcceeeeeEEEEEecCCCEE
Q 016600 227 KSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFC-LAIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 227 ~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~C-l~i~~~-----~~~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
..+|.....+|+|+|+| +++.++|++++|++.........| ++++.. .++.||||+.|||++|+|||++++||
T Consensus 243 ~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~I 321 (326)
T cd05487 243 VVKCNEVPTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRI 321 (326)
T ss_pred EEeccccCCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEE
Confidence 34444456799999999 789999999999987654334567 477753 23579999999999999999999999
Q ss_pred EEEcC
Q 016600 301 GWSHS 305 (386)
Q Consensus 301 Gfa~~ 305 (386)
|||++
T Consensus 322 GfA~a 326 (326)
T cd05487 322 GFALA 326 (326)
T ss_pred eeeeC
Confidence 99975
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.6e-41 Score=329.21 Aligned_cols=238 Identities=21% Similarity=0.359 Sum_probs=192.7
Q ss_pred CCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccCCCCCCCCCceEEecCCCCCC------h
Q 016600 38 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------V 111 (386)
Q Consensus 38 ~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S------~ 111 (386)
+.|.|++.|++| +++|.+++|+|+|++. ...++.|||+.++.+........|||||||+...+ .
T Consensus 64 ~~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~ 133 (320)
T cd05488 64 NGTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPP 133 (320)
T ss_pred CCCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCH
Confidence 458999999998 5899999999999875 45789999998876654343356999999998765 3
Q ss_pred HHHHHhcCCC-CCeEEEeecCC--CCceEEECCCCCCC----CeeeeeeecCCcceeEEEEEeEEEEcCeeecCCCceEE
Q 016600 112 PSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAI 184 (386)
Q Consensus 112 ~~~L~~~glI-~~~FSl~l~~~--~~G~i~fGg~d~~~----~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~~~~~~i 184 (386)
..+|+++|+| +++||+||++. ..|.|+||++|+.+ +.|+|++. ..+|.|++++|.||++.+......++
T Consensus 134 ~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~~~~i 209 (320)
T cd05488 134 FYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELENTGAA 209 (320)
T ss_pred HHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCCCeEE
Confidence 4579999999 89999999974 47999999999865 45777752 36999999999999998876678899
Q ss_pred EeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecce
Q 016600 185 VDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVV 264 (386)
Q Consensus 185 iDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~ 264 (386)
|||||+++++|++++++|.+.+... . . +..+|..+|.....+|.|+|+| +++.+.|++++|++..
T Consensus 210 vDSGtt~~~lp~~~~~~l~~~~~~~----~-~-----~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~---- 274 (320)
T cd05488 210 IDTGTSLIALPSDLAEMLNAEIGAK----K-S-----WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV---- 274 (320)
T ss_pred EcCCcccccCCHHHHHHHHHHhCCc----c-c-----cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC----
Confidence 9999999999999999988776321 1 1 1223445555556899999999 6799999999999854
Q ss_pred eeEEE-EEEccC-----CCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 265 TGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 265 ~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
...|+ .+...+ ++.||||+.|||++|+|||++++|||||+
T Consensus 275 ~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 34686 454321 34799999999999999999999999996
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.2e-41 Score=329.35 Aligned_cols=256 Identities=21% Similarity=0.363 Sum_probs=204.3
Q ss_pred CCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeee
Q 016600 6 LNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCG 85 (386)
Q Consensus 6 ~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~ 85 (386)
++.|+|++|+|++. ..|.|.+.|++| +++|.+++|+|+|++. ...++.|||+
T Consensus 53 ~~~y~~~~Sst~~~------------------~~~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~ 104 (329)
T cd05485 53 HNKYDSTKSSTYKK------------------NGTEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEA 104 (329)
T ss_pred CCeECCcCCCCeEE------------------CCeEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEE
Confidence 45677777777765 348999999998 5899999999999875 4578999999
Q ss_pred eeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCC----Ceee
Q 016600 86 MKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT----QQST 150 (386)
Q Consensus 86 ~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~----~~~~ 150 (386)
.++.+........+||||||+..++ ++.+|+++|+| +++||+||.+. ..|+|+||++|+++ +.++
T Consensus 105 ~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~ 184 (329)
T cd05485 105 INEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYL 184 (329)
T ss_pred EecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEE
Confidence 8876643333457999999998765 46899999999 89999999864 36999999999865 4577
Q ss_pred eeeecCCcceeEEEEEeEEEEcCeeecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 016600 151 SFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSS 230 (386)
Q Consensus 151 p~v~~~~~~~~y~V~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~ 230 (386)
|+. ...+|.|.++++.|+++.+......+||||||+++++|++++++|.+++.. .... . .||..+|
T Consensus 185 p~~----~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~~~~-~-----~~~~~~C 250 (329)
T cd05485 185 PVT----RKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGA----KPII-G-----GEYMVNC 250 (329)
T ss_pred EcC----CceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHHHHHHHHHHhCC----cccc-C-----CcEEEec
Confidence 764 247999999999999998875667899999999999999999998877632 1111 1 2344455
Q ss_pred CCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEcc-----CCCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 231 QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 231 ~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
....++|+|+|+| +++.+.|++++|+++.......+|+ +++.. .++.||||+.|||++|+|||++++|||||+
T Consensus 251 ~~~~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 251 SAIPSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cccccCCcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 4456789999999 7899999999999886543345786 56642 235799999999999999999999999985
No 13
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.2e-41 Score=330.62 Aligned_cols=287 Identities=20% Similarity=0.236 Sum_probs=215.7
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEee
Q 016600 5 DLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGC 84 (386)
Q Consensus 5 ~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~ 84 (386)
.++.|+|++|+||+.. .|.|+++|++| +++|.+++|+|+|++... ....+.|++
T Consensus 38 ~~~~f~~~~SsT~~~~------------------~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~ 91 (364)
T cd05473 38 IHTYFHRELSSTYRDL------------------GKGVTVPYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAA 91 (364)
T ss_pred ccccCCchhCcCcccC------------------CceEEEEECcc--eEEEEEEEEEEEECCCCc------cceEEeeEE
Confidence 4678999999999884 38999999998 689999999999986411 222344667
Q ss_pred eeeccCCCCCCCCCceEEecCCCCCC--------hHHHHHhcCCCCCeEEEeecC-----------CCCceEEECCCCCC
Q 016600 85 GMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLIRNSFSMCFDK-----------DDSGRIFFGDQGPA 145 (386)
Q Consensus 85 ~~~~~g~~~~~~~~dGIlGLg~~~~S--------~~~~L~~~glI~~~FSl~l~~-----------~~~G~i~fGg~d~~ 145 (386)
+....+.+......|||||||++.++ ++++|++++.++++||+||+. ...|.|+||++|++
T Consensus 92 ~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~ 171 (364)
T cd05473 92 ITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPS 171 (364)
T ss_pred EeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHh
Confidence 66655554444467999999998653 667899998888899998852 12699999999986
Q ss_pred C----CeeeeeeecCCcceeEEEEEeEEEEcCeeecCC-----CceEEEeccccceeeCHHHHHHHHHHHHHhccccccc
Q 016600 146 T----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQT-----SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITS 216 (386)
Q Consensus 146 ~----~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~~-----~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~ 216 (386)
+ +.|+|++. ..+|.|.+++|.|+++.+... ...+||||||++++||+++|++|.+++.++.......
T Consensus 172 ~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~ 247 (364)
T cd05473 172 LYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFP 247 (364)
T ss_pred hcCCCceEEecCc----ceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCC
Confidence 5 46888853 479999999999999987632 1369999999999999999999999998765322111
Q ss_pred cc--ccccccccccccCCCCCCCeEEEEEcCC-----ceeeecCCeEEEEeec-ceeeEEEEEEcc-CCCceEEcceeee
Q 016600 217 FE--GYPWKCCYKSSSQRLPKLPSVKLMFPQN-----NSFVVNNPVFVIYGTQ-VVTGFCLAIQPV-DGDIGTIGQNFMT 287 (386)
Q Consensus 217 ~~--~~~~~~C~~~~~~~~~~~P~i~~~f~g~-----~~~~i~~~~y~~~~~~-~~~~~Cl~i~~~-~~~~~IlG~~fl~ 287 (386)
.. ......|+......+..+|+|+|+|.+. ..+.+++++|++.... +....|+++... ..+.||||+.|||
T Consensus 248 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr 327 (364)
T cd05473 248 DGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIME 327 (364)
T ss_pred ccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEc
Confidence 11 1123478865443345799999999753 2678899999876432 124678754322 2357999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCCCCCCCCcccCCCC
Q 016600 288 GYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPG 321 (386)
Q Consensus 288 ~~yvvFD~e~~rIGfa~~~C~~~~~~~~~~~~~~ 321 (386)
++|+|||++++|||||+++|......++-.+..|
T Consensus 328 ~~yvvfD~~~~rIGfa~~~C~~~~~~~~~~~~~~ 361 (364)
T cd05473 328 GFYVVFDRANKRVGFAVSTCAEHDGFRTSEIEGP 361 (364)
T ss_pred ceEEEEECCCCEEeeEecccccccCcceeeeccC
Confidence 9999999999999999999998776666666553
No 14
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.5e-41 Score=338.64 Aligned_cols=265 Identities=23% Similarity=0.344 Sum_probs=210.9
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEE
Q 016600 2 QDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 81 (386)
Q Consensus 2 ~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~ 81 (386)
+++.++.|||++||||+.+.++. +...+.++|++| ++.|.+++|+|+|++. .+.++.
T Consensus 156 ~C~~~~~yd~s~SSTy~~~~~~~-------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~ 212 (482)
T PTZ00165 156 GCAPHRKFDPKKSSTYTKLKLGD-------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQS 212 (482)
T ss_pred cccccCCCCccccCCcEecCCCC-------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEE
Confidence 35678999999999999854321 113577999998 6889999999999985 568999
Q ss_pred EeeeeeccCCCCCCCCCceEEecCCCCC---------ChHHHHHhcCCC-CCeEEEeecCC--CCceEEECCCCCCC---
Q 016600 82 IGCGMKQSGGYLDGVAPDGLIGLGLGEI---------SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT--- 146 (386)
Q Consensus 82 fg~~~~~~g~~~~~~~~dGIlGLg~~~~---------S~~~~L~~~glI-~~~FSl~l~~~--~~G~i~fGg~d~~~--- 146 (386)
|||++.+++..+....+|||||||++.+ +++++|+++|+| +++||+||.++ ..|+|+|||+|+..
T Consensus 213 FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~ 292 (482)
T PTZ00165 213 IGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLE 292 (482)
T ss_pred EEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCC
Confidence 9999988765445556899999999864 367899999999 89999999763 36999999999753
Q ss_pred ---CeeeeeeecCCcceeEEEEEeEEEEcCeeec--CCCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccc
Q 016600 147 ---QQSTSFLASNGKYITYIIGVETCCIGSSCLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP 221 (386)
Q Consensus 147 ---~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~--~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (386)
+.|+|+.. ..||.|.+++|.||++.+. .....+|+||||+++++|++++++|.+++..
T Consensus 293 ~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~------------- 355 (482)
T PTZ00165 293 GHKIWWFPVIS----TDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPL------------- 355 (482)
T ss_pred CCceEEEEccc----cceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCC-------------
Confidence 34666642 4799999999999998765 3567899999999999999999998887621
Q ss_pred cccccccccCCCCCCCeEEEEEcC--C--ceeeecCCeEEEEee--cceeeEE-EEEEccC-----CCceEEcceeeeeE
Q 016600 222 WKCCYKSSSQRLPKLPSVKLMFPQ--N--NSFVVNNPVFVIYGT--QVVTGFC-LAIQPVD-----GDIGTIGQNFMTGY 289 (386)
Q Consensus 222 ~~~C~~~~~~~~~~~P~i~~~f~g--~--~~~~i~~~~y~~~~~--~~~~~~C-l~i~~~~-----~~~~IlG~~fl~~~ 289 (386)
...|+. ...+|+|+|+|.+ + ..+.+++++|++... ...+..| ++++..+ ++.||||++|||+|
T Consensus 356 ~~~C~~-----~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~y 430 (482)
T PTZ00165 356 EEDCSN-----KDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKY 430 (482)
T ss_pred cccccc-----cccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeE
Confidence 124654 3579999999953 2 279999999998742 2235577 5787642 35799999999999
Q ss_pred EEEEecCCCEEEEEcCCCCCCC
Q 016600 290 RVVFDRENLKLGWSHSNCQDLN 311 (386)
Q Consensus 290 yvvFD~e~~rIGfa~~~C~~~~ 311 (386)
|+|||++|+|||||+++|....
T Consensus 431 y~VFD~~n~rIGfA~a~~~~~~ 452 (482)
T PTZ00165 431 YSIFDRDHMMVGLVPAKHDQSG 452 (482)
T ss_pred EEEEeCCCCEEEEEeeccCCCC
Confidence 9999999999999999986543
No 15
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.1e-41 Score=325.88 Aligned_cols=247 Identities=24% Similarity=0.365 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEE
Q 016600 3 DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVII 82 (386)
Q Consensus 3 ~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~f 82 (386)
++.++.|+|++|+||+.. .+.+.+.|++| +++|.+++|+|+|++. ...++.|
T Consensus 48 C~~~~~y~~~~SsT~~~~------------------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f 99 (317)
T cd06098 48 CYFHSKYKSSKSSTYKKN------------------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVF 99 (317)
T ss_pred ccccCcCCcccCCCcccC------------------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEE
Confidence 345678888888888763 36789999998 6899999999999885 5678999
Q ss_pred eeeeeccCCCCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCCC----
Q 016600 83 GCGMKQSGGYLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ---- 147 (386)
Q Consensus 83 g~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~~---- 147 (386)
||+..+.+..+....+|||||||+..++ ++.+|+++|+| +++||+||++. ..|+|+||++|++++
T Consensus 100 ~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l 179 (317)
T cd06098 100 IEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEH 179 (317)
T ss_pred EEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccce
Confidence 9998776543334467999999998654 56789999999 89999999853 369999999998764
Q ss_pred eeeeeeecCCcceeEEEEEeEEEEcCeeec--CCCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccc
Q 016600 148 QSTSFLASNGKYITYIIGVETCCIGSSCLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCC 225 (386)
Q Consensus 148 ~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~--~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C 225 (386)
.|+|+.. ..+|.|.+++|.||++.+. .....+||||||+++++|++++++|. +...|
T Consensus 180 ~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C 238 (317)
T cd06098 180 TYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDC 238 (317)
T ss_pred EEEecCc----CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCc
Confidence 5777742 3699999999999998764 34568999999999999999776542 23456
Q ss_pred cccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEccC-----CCceEEcceeeeeEEEEEecCCCE
Q 016600 226 YKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLK 299 (386)
Q Consensus 226 ~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvvFD~e~~r 299 (386)
+. ...+|+|+|+| +++.++|++++|++....+....|+ +++..+ ++.||||+.|||++|+|||++++|
T Consensus 239 ~~-----~~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~ 312 (317)
T cd06098 239 NS-----LSSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLR 312 (317)
T ss_pred cc-----cccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCE
Confidence 54 34799999999 7799999999999876544356786 565422 357999999999999999999999
Q ss_pred EEEEc
Q 016600 300 LGWSH 304 (386)
Q Consensus 300 IGfa~ 304 (386)
||||+
T Consensus 313 iGfA~ 317 (317)
T cd06098 313 VGFAE 317 (317)
T ss_pred EeecC
Confidence 99996
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-39 Score=309.37 Aligned_cols=245 Identities=29% Similarity=0.566 Sum_probs=199.8
Q ss_pred CCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeee
Q 016600 8 EYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMK 87 (386)
Q Consensus 8 ~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~ 87 (386)
.+|...|-+|- .|+. .| ..| .|.|+++|+++ +.++|.+++|+|+|+..... ....++.|||+..
T Consensus 19 ~~DTGS~~~Wv--~c~~-~c---~~c-----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~ 82 (273)
T cd05475 19 DIDTGSDLTWL--QCDA-PC---TGC-----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYD 82 (273)
T ss_pred EEccCCCceEE--eCCC-CC---CCC-----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeec
Confidence 46777777885 4641 24 234 49999999976 68999999999999764211 2457899999988
Q ss_pred ccCCCC-CCCCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecCCCCceEEECCCCC--CCCeeeeeeecCCcceeEEE
Q 016600 88 QSGGYL-DGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGP--ATQQSTSFLASNGKYITYII 164 (386)
Q Consensus 88 ~~g~~~-~~~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~~~~G~i~fGg~d~--~~~~~~p~v~~~~~~~~y~V 164 (386)
+.+.+. .....|||||||+..+++++||+++++|+++||+||.+.+.|.|+||+... ..+.|+|+...+. ..+|.|
T Consensus 83 ~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v 161 (273)
T cd05475 83 QQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSP 161 (273)
T ss_pred cCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCC-CCeEEE
Confidence 765432 233579999999999999999999999999999999987679999996532 2367899865442 479999
Q ss_pred EEeEEEEcCeeecCCCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEc
Q 016600 165 GVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFP 244 (386)
Q Consensus 165 ~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 244 (386)
++++|.||++.+......+||||||++++||+++| +|+|+|.|.
T Consensus 162 ~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------------------------------------~p~i~~~f~ 205 (273)
T cd05475 162 GPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------------------------------------FKPLTLKFG 205 (273)
T ss_pred eEeEEEECCEECcCCCceEEEECCCceEEcCCccc------------------------------------cccEEEEEC
Confidence 99999999997765677899999999999999876 688999996
Q ss_pred CC---ceeeecCCeEEEEeecceeeEEEEEEccC----CCceEEcceeeeeEEEEEecCCCEEEEEcCCC
Q 016600 245 QN---NSFVVNNPVFVIYGTQVVTGFCLAIQPVD----GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 307 (386)
Q Consensus 245 g~---~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~----~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~~C 307 (386)
+. +.+++++++|++.... +..|+++.... .+.||||+.|||++|+|||++++|||||+.+|
T Consensus 206 ~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 206 KGWRTRLLEIPPENYLIISEK--GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCceeEEEeCCCceEEEcCC--CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 54 6999999999987543 56899987643 35799999999999999999999999999998
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.7e-40 Score=308.84 Aligned_cols=217 Identities=27% Similarity=0.513 Sum_probs=188.3
Q ss_pred CceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccCCCCCCCCCceEEecCCCCCChHHHHHhcC
Q 016600 40 CPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAG 119 (386)
Q Consensus 40 c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~L~~~g 119 (386)
|.|.+.|+++ +.++|++++|+|+|++.. ..+.++.|||+..+++ + .....+||||||+..+|++.||+.++
T Consensus 31 ~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhhccc
Confidence 8999999986 799999999999999862 1457899999999876 3 33357999999999999999999887
Q ss_pred CCCCeEEEeecCC----CCceEEECCCCC---CCCeeeeeeecCCcceeEEEEEeEEEEcCeeec----------CCCce
Q 016600 120 LIRNSFSMCFDKD----DSGRIFFGDQGP---ATQQSTSFLASNGKYITYIIGVETCCIGSSCLK----------QTSFK 182 (386)
Q Consensus 120 lI~~~FSl~l~~~----~~G~i~fGg~d~---~~~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~----------~~~~~ 182 (386)
++||+||.+. ..|+|+||++|+ ..+.|+|++..+....+|.|+|++|.|+++.+. .....
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 8999999863 479999999998 456799998654445799999999999999874 24567
Q ss_pred EEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeec
Q 016600 183 AIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 262 (386)
Q Consensus 183 ~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~ 262 (386)
+||||||++++||+++| |.|+|+|.++..+.+++++|++....
T Consensus 179 ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~ 221 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVGE 221 (265)
T ss_pred EEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECCC
Confidence 99999999999999987 88999997689999999999985443
Q ss_pred ceeeEEEEEEcc-CCCceEEcceeeeeEEEEEecCCCEEEEEcCCC
Q 016600 263 VVTGFCLAIQPV-DGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 307 (386)
Q Consensus 263 ~~~~~Cl~i~~~-~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~~C 307 (386)
+.+|+++... ..+.||||++|||++|++||++++|||||+++|
T Consensus 222 --~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 222 --GVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred --CCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 6799999887 467899999999999999999999999999999
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.8e-38 Score=318.54 Aligned_cols=256 Identities=20% Similarity=0.326 Sum_probs=197.8
Q ss_pred CCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEe
Q 016600 4 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIG 83 (386)
Q Consensus 4 ~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg 83 (386)
+.++.|||++|+||+. ..|.|++.|++| +++|.+++|+|+|++. ... ..|+
T Consensus 177 ~~~~~yd~s~SsT~~~------------------~~~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~ 227 (453)
T PTZ00147 177 ETKNLYDSSKSKTYEK------------------DGTKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFI 227 (453)
T ss_pred cCCCccCCccCcceEE------------------CCCEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEE
Confidence 4456677777777665 348999999998 6899999999999985 333 5789
Q ss_pred eeeeccCC--CCCCCCCceEEecCCCCCC------hHHHHHhcCCC-CCeEEEeecCC--CCceEEECCCCCCC----Ce
Q 016600 84 CGMKQSGG--YLDGVAPDGLIGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQ 148 (386)
Q Consensus 84 ~~~~~~g~--~~~~~~~dGIlGLg~~~~S------~~~~L~~~glI-~~~FSl~l~~~--~~G~i~fGg~d~~~----~~ 148 (386)
|+.++.+. ......+|||||||++.++ ++.+|+++|+| +++||+||++. ..|.|+|||+|+++ +.
T Consensus 228 ~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~ 307 (453)
T PTZ00147 228 EVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLT 307 (453)
T ss_pred EEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceE
Confidence 98876542 2233357999999998664 57799999999 88999999864 47999999999875 45
Q ss_pred eeeeeecCCcceeEEEEEeEEEEcCeeecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccccc
Q 016600 149 STSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKS 228 (386)
Q Consensus 149 ~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~ 228 (386)
|+|+. ...+|.|.++ +.+++... ....+||||||+++++|+++++++.+++.. ........+...|+.
T Consensus 308 y~pl~----~~~~W~V~l~-~~vg~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~~----~~~~~~~~y~~~C~~- 375 (453)
T PTZ00147 308 YEKLN----HDLYWQVDLD-VHFGNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLDV----FKVPFLPLYVTTCNN- 375 (453)
T ss_pred EEEcC----CCceEEEEEE-EEECCEec--CceeEEECCCCchhcCCHHHHHHHHHHhCC----eecCCCCeEEEeCCC-
Confidence 77763 2479999998 57776543 467899999999999999999998887632 111111223456764
Q ss_pred ccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEE-EEEccC--CCceEEcceeeeeEEEEEecCCCEEEEEcC
Q 016600 229 SSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHS 305 (386)
Q Consensus 229 ~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~ 305 (386)
..+|+|+|+| ++..++|+|++|+..........|+ ++++.+ .+.||||+.|||++|+|||++++|||||++
T Consensus 376 -----~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a 449 (453)
T PTZ00147 376 -----TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALA 449 (453)
T ss_pred -----CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEe
Confidence 3689999999 5788999999998764433345785 687653 357999999999999999999999999998
Q ss_pred C
Q 016600 306 N 306 (386)
Q Consensus 306 ~ 306 (386)
+
T Consensus 450 ~ 450 (453)
T PTZ00147 450 K 450 (453)
T ss_pred c
Confidence 5
No 19
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.1e-38 Score=303.50 Aligned_cols=238 Identities=24% Similarity=0.412 Sum_probs=194.7
Q ss_pred ceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccCCCCCCCCCceEEecCCCCC-----------
Q 016600 41 PYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI----------- 109 (386)
Q Consensus 41 ~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~----------- 109 (386)
+|++.|++| +.+.|.+++|+|+|++. ...++.|||+++.. ..+||||||+...
T Consensus 31 ~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~ 94 (295)
T cd05474 31 DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYP 94 (295)
T ss_pred eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCC
Confidence 789999996 68999999999999986 45789999999842 3589999999876
Q ss_pred ChHHHHHhcCCC-CCeEEEeecCC--CCceEEECCCCCCC----CeeeeeeecCC--cceeEEEEEeEEEEcCeeec---
Q 016600 110 SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNG--KYITYIIGVETCCIGSSCLK--- 177 (386)
Q Consensus 110 S~~~~L~~~glI-~~~FSl~l~~~--~~G~i~fGg~d~~~----~~~~p~v~~~~--~~~~y~V~l~~i~v~~~~~~--- 177 (386)
+++++|+++|+| +++||+||.+. ..|.|+||++|+.+ +.++|++.... ...+|.|.+++|.|+++.+.
T Consensus 95 s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~ 174 (295)
T cd05474 95 NFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL 174 (295)
T ss_pred CHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc
Confidence 689999999999 89999999974 47999999999865 45788865432 23799999999999998863
Q ss_pred -CCCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeE
Q 016600 178 -QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVF 256 (386)
Q Consensus 178 -~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y 256 (386)
.....++|||||++++||++++++|.+++.+.... ....+...|+.. .. |.|+|+| ++..+.|++++|
T Consensus 175 ~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~C~~~-----~~-p~i~f~f-~g~~~~i~~~~~ 243 (295)
T cd05474 175 LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS----DEGLYVVDCDAK-----DD-GSLTFNF-GGATISVPLSDL 243 (295)
T ss_pred cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC----CCcEEEEeCCCC-----CC-CEEEEEE-CCeEEEEEHHHh
Confidence 34568999999999999999999999988554321 122344566643 34 9999999 568999999999
Q ss_pred EEEeec--ceeeEE-EEEEccCCCceEEcceeeeeEEEEEecCCCEEEEEcC
Q 016600 257 VIYGTQ--VVTGFC-LAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 305 (386)
Q Consensus 257 ~~~~~~--~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~ 305 (386)
++.... .....| +++++.+.+.||||++|||++|++||++++|||||++
T Consensus 244 ~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 244 VLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 987642 123455 7898876678999999999999999999999999985
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.3e-38 Score=314.69 Aligned_cols=240 Identities=18% Similarity=0.304 Sum_probs=184.3
Q ss_pred CCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccC--CCCCCCCCceEEecCCCCCC-----
Q 016600 38 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSG--GYLDGVAPDGLIGLGLGEIS----- 110 (386)
Q Consensus 38 ~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g--~~~~~~~~dGIlGLg~~~~S----- 110 (386)
..|.|++.|++| ++.|.+++|+|+|++. .. ...|+++.+..+ .......+|||||||+..++
T Consensus 192 ~~~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~-~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 192 DGTKVDITYGSG--TVKGFFSKDLVTLGHL--------SM-PYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred CCcEEEEEECCc--eEEEEEEEEEEEECCE--------EE-ccEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 358999999998 5999999999999986 22 357888876542 12233357999999998654
Q ss_pred -hHHHHHhcCCC-CCeEEEeecCC--CCceEEECCCCCCC----CeeeeeeecCCcceeEEEEEeEEEEcCeeecCCCce
Q 016600 111 -VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFK 182 (386)
Q Consensus 111 -~~~~L~~~glI-~~~FSl~l~~~--~~G~i~fGg~d~~~----~~~~p~v~~~~~~~~y~V~l~~i~v~~~~~~~~~~~ 182 (386)
++.+|+++|+| +++||+||++. ..|.|+|||+|+++ +.|+|+. ...+|.|.++ +.+|.... ....
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~----~~~yW~I~l~-v~~G~~~~--~~~~ 333 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN----HDLYWQIDLD-VHFGKQTM--QKAN 333 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC----cCceEEEEEE-EEECceec--cccc
Confidence 67899999999 88999999864 47999999999876 4577763 2479999998 66765443 3567
Q ss_pred EEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeec
Q 016600 183 AIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 262 (386)
Q Consensus 183 ~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~ 262 (386)
+||||||+++++|+++++++.+.+.. ........+...|+. ..+|+|+|+| ++..++|++++|+.....
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~~----~~~~~~~~y~~~C~~------~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~ 402 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLNV----IKVPFLPFYVTTCDN------KEMPTLEFKS-ANNTYTLEPEYYMNPLLD 402 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhCC----eecCCCCeEEeecCC------CCCCeEEEEE-CCEEEEECHHHheehhcc
Confidence 99999999999999999888776632 111111223445653 3689999999 678999999999875332
Q ss_pred ceeeEEE-EEEccC--CCceEEcceeeeeEEEEEecCCCEEEEEcCC
Q 016600 263 VVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSN 306 (386)
Q Consensus 263 ~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~~ 306 (386)
..+..|+ ++++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 403 ~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 403 VDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2245785 776643 4579999999999999999999999999874
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.8e-37 Score=292.77 Aligned_cols=226 Identities=22% Similarity=0.305 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEee
Q 016600 5 DLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGC 84 (386)
Q Consensus 5 ~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~ 84 (386)
.++.|+|++|+|++.+ +.|+|.+.|++| +.++|.+++|+|+|++. ...++.|||
T Consensus 39 ~~~~y~~~~Sst~~~~-----------------~~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~ 92 (278)
T cd06097 39 GHKLYDPSKSSTAKLL-----------------PGATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIEL 92 (278)
T ss_pred cCCcCCCccCccceec-----------------CCcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEE
Confidence 3455666666666653 248999999998 66999999999999985 567899999
Q ss_pred eeeccCCCCCCCCCceEEecCCCCCC---------hHHHHHhcCCCCCeEEEeecCCCCceEEECCCCCCC----Ceeee
Q 016600 85 GMKQSGGYLDGVAPDGLIGLGLGEIS---------VPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPAT----QQSTS 151 (386)
Q Consensus 85 ~~~~~g~~~~~~~~dGIlGLg~~~~S---------~~~~L~~~glI~~~FSl~l~~~~~G~i~fGg~d~~~----~~~~p 151 (386)
++...+.+.....+|||||||+..++ ++++|.+++. +++||+||.+...|+|+|||+|+++ +.|+|
T Consensus 93 ~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~p 171 (278)
T cd06097 93 ATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTP 171 (278)
T ss_pred EeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEE
Confidence 99887644454568999999987543 5677888765 8999999997668999999999864 56888
Q ss_pred eeecCCcceeEEEEEeEEEEcCee-ecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 016600 152 FLASNGKYITYIIGVETCCIGSSC-LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSS 230 (386)
Q Consensus 152 ~v~~~~~~~~y~V~l~~i~v~~~~-~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~ 230 (386)
++.. ..+|.|++++|.|+++. .......+||||||+++++|++++++|.+++. +...... ..+|..+|
T Consensus 172 i~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~---g~~~~~~-----~~~~~~~C 240 (278)
T cd06097 172 VDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIVEAYYSQVP---GAYYDSE-----YGGWVFPC 240 (278)
T ss_pred ccCC---CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHHHHHHHhCc---CCcccCC-----CCEEEEEC
Confidence 7532 47999999999999984 33467789999999999999999988877662 1111111 22455566
Q ss_pred CCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccCCCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 231 QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 231 ~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
... +|+|+|+| .||||++|||++|+|||++|+|||||+
T Consensus 241 ~~~--~P~i~f~~----------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 241 DTT--LPDLSFAV----------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred CCC--CCCEEEEE----------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 532 89999998 699999999999999999999999996
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.5e-38 Score=302.32 Aligned_cols=257 Identities=26% Similarity=0.480 Sum_probs=205.0
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEee
Q 016600 5 DLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGC 84 (386)
Q Consensus 5 ~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~ 84 (386)
....|+|++|+|++.. .+++.+.|++| .++|.+++|+|+|++. ...++.||+
T Consensus 41 ~~~~y~~~~S~t~~~~------------------~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~ 92 (317)
T PF00026_consen 41 SSGFYNPSKSSTFSNQ------------------GKPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGL 92 (317)
T ss_dssp TSC-BBGGGSTTEEEE------------------EEEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEE
T ss_pred cccccccccccccccc------------------eeeeeeeccCc--ccccccccceEeeeec--------cccccceec
Confidence 3456666666666653 37899999998 4999999999999986 556899999
Q ss_pred eeeccCCCCCCCCCceEEecCCCC-------CChHHHHHhcCCC-CCeEEEeecCCC--CceEEECCCCCCCC----eee
Q 016600 85 GMKQSGGYLDGVAPDGLIGLGLGE-------ISVPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPATQ----QST 150 (386)
Q Consensus 85 ~~~~~g~~~~~~~~dGIlGLg~~~-------~S~~~~L~~~glI-~~~FSl~l~~~~--~G~i~fGg~d~~~~----~~~ 150 (386)
+....+........+||||||+.. .+++++|+++|+| +++||++|++.. .|.|+||++|++++ .++
T Consensus 93 ~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~ 172 (317)
T PF00026_consen 93 ADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWV 172 (317)
T ss_dssp EEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEE
T ss_pred cccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecccccchheeeccccccccCceecc
Confidence 998655432333569999999753 4588999999999 899999999874 69999999998764 466
Q ss_pred eeeecCCcceeEEEEEeEEEEcCe-eecCCCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccc
Q 016600 151 SFLASNGKYITYIIGVETCCIGSS-CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 229 (386)
Q Consensus 151 p~v~~~~~~~~y~V~l~~i~v~~~-~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~ 229 (386)
|+. ...+|.|.+++|.++++ ........++||||+++++||++++++|++.+...... .+|..+
T Consensus 173 ~~~----~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~ 237 (317)
T PF00026_consen 173 PLV----SSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVP 237 (317)
T ss_dssp EBS----STTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEE
T ss_pred Ccc----cccccccccccccccccccccccceeeecccccccccccchhhHHHHhhhcccccc-----------eeEEEe
Confidence 664 35789999999999999 44445678999999999999999999999887543222 345556
Q ss_pred cCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEE-EEEEc----cCCCceEEcceeeeeEEEEEecCCCEEEEEc
Q 016600 230 SQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFC-LAIQP----VDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 304 (386)
Q Consensus 230 ~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~C-l~i~~----~~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~ 304 (386)
|.....+|.|+|+| ++..+.+++++|++.........| ++|.. ...+.+|||.+|||++|+|||.|++|||||+
T Consensus 238 c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 238 CNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp TTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred cccccccceEEEee-CCEEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 65556789999999 689999999999998876534467 56776 3467899999999999999999999999998
Q ss_pred C
Q 016600 305 S 305 (386)
Q Consensus 305 ~ 305 (386)
+
T Consensus 317 a 317 (317)
T PF00026_consen 317 A 317 (317)
T ss_dssp E
T ss_pred C
Confidence 5
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.4e-34 Score=271.66 Aligned_cols=240 Identities=24% Similarity=0.434 Sum_probs=191.9
Q ss_pred CCCCCCCCCcc-ccCCCcCCCCCC--------CCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCccccccccc
Q 016600 9 YSPSASSTSKH-LSCSHRLCDLGT--------SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQAS 79 (386)
Q Consensus 9 f~p~~SsT~~~-~~C~~~~C~~~~--------~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~ 79 (386)
+|...|-+|-. -.|....|.... .|......|.|++.|++| +++|.+++|+|+|++. ...+
T Consensus 18 ~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~ 87 (283)
T cd05471 18 FDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPN 87 (283)
T ss_pred EeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCC--eEEEEEEEeEEEECCE--------EEec
Confidence 46665556653 344443332221 112234679999999997 7999999999999986 4679
Q ss_pred EEEeeeeeccCCCCCCCCCceEEecCCCC------CChHHHHHhcCCC-CCeEEEeecCC----CCceEEECCCCCCC--
Q 016600 80 VIIGCGMKQSGGYLDGVAPDGLIGLGLGE------ISVPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-- 146 (386)
Q Consensus 80 ~~fg~~~~~~g~~~~~~~~dGIlGLg~~~------~S~~~~L~~~glI-~~~FSl~l~~~----~~G~i~fGg~d~~~-- 146 (386)
+.|||+....+.+ .....+||||||+.. .+++++|+++++| +++||+||.+. ..|.|+||++|+.+
T Consensus 88 ~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~ 166 (283)
T cd05471 88 QTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYT 166 (283)
T ss_pred eEEEEEeccCCcc-cccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccC
Confidence 9999999987633 233569999999987 7899999999999 99999999974 58999999999863
Q ss_pred --CeeeeeeecCCcceeEEEEEeEEEEcCe--eecCCCceEEEeccccceeeCHHHHHHHHHHHHHhccccccccccccc
Q 016600 147 --QQSTSFLASNGKYITYIIGVETCCIGSS--CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPW 222 (386)
Q Consensus 147 --~~~~p~v~~~~~~~~y~V~l~~i~v~~~--~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~ 222 (386)
+.++|++.. ...+|.|.+++|.|+++ ........++|||||++++||++++++|.+++...... .
T Consensus 167 ~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~ 235 (283)
T cd05471 167 GDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------S 235 (283)
T ss_pred CceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------c
Confidence 568888654 25799999999999997 44446778999999999999999999999988654432 2
Q ss_pred ccccccccCCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEccCCCceEEcceeeeeEEEEEecCCCEEEE
Q 016600 223 KCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGW 302 (386)
Q Consensus 223 ~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIGf 302 (386)
..|+...|.....+|.|+|+| .+|||++|||++|++||++++||||
T Consensus 236 ~~~~~~~~~~~~~~p~i~f~f----------------------------------~~ilG~~fl~~~y~vfD~~~~~igf 281 (283)
T cd05471 236 DGGYGVDCSPCDTLPDITFTF----------------------------------LWILGDVFLRNYYTVFDLDNNRIGF 281 (283)
T ss_pred CCcEEEeCcccCcCCCEEEEE----------------------------------EEEccHhhhhheEEEEeCCCCEEee
Confidence 345666666678899999999 6999999999999999999999999
Q ss_pred Ec
Q 016600 303 SH 304 (386)
Q Consensus 303 a~ 304 (386)
|+
T Consensus 282 a~ 283 (283)
T cd05471 282 AP 283 (283)
T ss_pred cC
Confidence 85
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=3.9e-25 Score=193.50 Aligned_cols=142 Identities=27% Similarity=0.501 Sum_probs=116.3
Q ss_pred eEEEEEeEEEEcCeeecC--C-------CceEEEeccccceeeCHHHHHHHHHHHHHhcccccc---ccccccccccccc
Q 016600 161 TYIIGVETCCIGSSCLKQ--T-------SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTIT---SFEGYPWKCCYKS 228 (386)
Q Consensus 161 ~y~V~l~~i~v~~~~~~~--~-------~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~C~~~ 228 (386)
+|.|+|++|+||++.+.. . ...+||||||++++||+++|++|+++|.+++..... ......++.||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 599999999999999873 2 246999999999999999999999999999876532 2333678899998
Q ss_pred cc----CCCCCCCeEEEEEcCCceeeecCCeEEEEeecceeeEEEEEEcc---CCCceEEcceeeeeEEEEEecCCCEEE
Q 016600 229 SS----QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPV---DGDIGTIGQNFMTGYRVVFDRENLKLG 301 (386)
Q Consensus 229 ~~----~~~~~~P~i~~~f~g~~~~~i~~~~y~~~~~~~~~~~Cl~i~~~---~~~~~IlG~~fl~~~yvvFD~e~~rIG 301 (386)
.. ..+..+|+|+|+|.+|..+++++++|++.... +.+|++|.++ .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87 56789999999999999999999999998874 7999999998 468999999999999999999999999
Q ss_pred EEc
Q 016600 302 WSH 304 (386)
Q Consensus 302 fa~ 304 (386)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.83 E-value=8.8e-21 Score=166.37 Aligned_cols=128 Identities=36% Similarity=0.658 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCC----CCCCCCCCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccE
Q 016600 5 DLNEYSPSASSTSKHLSCSHRLCDLGT----SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV 80 (386)
Q Consensus 5 ~~~~f~p~~SsT~~~~~C~~~~C~~~~----~C~~~~~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~ 80 (386)
..+.|+|++|+||+.++|+++.|.... .|...++.|.|.+.|.++ +.++|++++|+|+++...... ....++
T Consensus 30 ~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~-s~~~G~l~~D~~~~~~~~~~~---~~~~~~ 105 (164)
T PF14543_consen 30 PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDG-SSSSGFLASDTLTFGSSSGGS---NSVPDF 105 (164)
T ss_dssp ----STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTT-EEEEEEEEEEEEEEEEESSSS---EEEEEE
T ss_pred CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCC-ccccCceEEEEEEecCCCCCC---ceeeeE
Confidence 468899999999999999999998542 455556789999999996 999999999999999874322 356789
Q ss_pred EEeeeeeccCCCCCCCCCceEEecCCCCCChHHHHHhcCCCCCeEEEeecC---CCCceEEECC
Q 016600 81 IIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDK---DDSGRIFFGD 141 (386)
Q Consensus 81 ~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~L~~~glI~~~FSl~l~~---~~~G~i~fGg 141 (386)
.|||++.+.+.+. ..+||||||+..+|++.||+++ ..++||+||.+ ...|.|+||+
T Consensus 106 ~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 106 IFGCATSNSGLFY---GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred EEEeeeccccCCc---CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 9999999987664 4689999999999999999888 67999999998 3479999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.01 E-value=1.1e-09 Score=88.98 Aligned_cols=57 Identities=26% Similarity=0.430 Sum_probs=48.4
Q ss_pred CCCceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccCCCCCCCCCceEEec
Q 016600 38 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 104 (386)
Q Consensus 38 ~~c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGL 104 (386)
..|.|.+.|++| ++.|.+++|+|+|++. ...++.|||+....+.+......+|||||
T Consensus 53 ~~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 459999999998 6889999999999886 46799999999998765444467999998
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.91 E-value=0.15 Score=42.20 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=28.6
Q ss_pred ceeEEEEEeEEEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 159 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 159 ~~~y~V~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
.++|.++ +.|||++ +.++||||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~-----~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRN-----VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 3667666 6688874 4699999999999999977764
No 28
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.42 E-value=0.16 Score=42.18 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=25.9
Q ss_pred EEEccCCCceEEcceeeeeEEEEEecCCCEEE
Q 016600 270 AIQPVDGDIGTIGQNFMTGYRVVFDRENLKLG 301 (386)
Q Consensus 270 ~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIG 301 (386)
.+.+......|||..||+.+..+.|.++.+|-
T Consensus 92 ~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 92 TVLEDDDVDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred EEECCCCcCEEecHHHHHhCCeEEECCCCEEE
Confidence 34444345689999999999999999999875
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=94.27 E-value=0.24 Score=40.02 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred CceEEEecccccee-eCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEE
Q 016600 180 SFKAIVDSGSSFTF-LPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVI 258 (386)
Q Consensus 180 ~~~~iiDSGTt~~~-lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~ 258 (386)
+..++||||.+... +|.++++++- ... . .......++|......- +..
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~lg--------l~~----------~-----------~~~~~~tA~G~~~~~~v--~~~ 64 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKLG--------LPE----------L-----------DQRRVYLADGREVLTDV--AKA 64 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHcC--------CCc----------c-----------cCcEEEecCCcEEEEEE--EEE
Confidence 45799999999886 9999877731 000 0 01234444443222211 111
Q ss_pred Eeecc-eeeEEEEEEccCCCceEEcceeeeeEEEEEecCCCEE
Q 016600 259 YGTQV-VTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 259 ~~~~~-~~~~Cl~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
...-+ ....+..+.....+..+||..||+++-++.|+.++++
T Consensus 65 ~v~igg~~~~~~v~~~~~~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 65 SIIINGLEIDAFVESLGYVDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred EEEECCEEEEEEEEecCCCCccEecHHHHhhCCEEEehhhCcC
Confidence 11111 1223333333333578999999999999999988764
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.47 E-value=2.2 Score=35.90 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=26.2
Q ss_pred CceEEcceeeeeEEEEEecCCCEEEEEcC
Q 016600 277 DIGTIGQNFMTGYRVVFDRENLKLGWSHS 305 (386)
Q Consensus 277 ~~~IlG~~fl~~~yvvFD~e~~rIGfa~~ 305 (386)
-..|||.++|+.+..+-|+.+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 46999999999999999999999999753
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.74 E-value=1.3 Score=33.52 Aligned_cols=29 Identities=10% Similarity=0.400 Sum_probs=23.7
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
+.|||+.+ .++||||.+.+.+.+++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56777644 599999999999999987775
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.12 E-value=2.2 Score=32.94 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.8
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
+.|||+.+. +.||||.+.+.++++.+..+
T Consensus 5 ~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 677887664 89999999999999988874
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.79 E-value=2.4 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=24.1
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
+.|+++.+. +++|||.+..+++++.++.+
T Consensus 13 ~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 567776554 99999999999999988875
No 34
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=81.24 E-value=3 Score=31.87 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
+.||++. +.++||||.+.+.++.+..+.+
T Consensus 7 v~i~~~~-----~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQP-----VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 5677554 4599999999999999876664
No 35
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=80.26 E-value=6.8 Score=30.49 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=43.9
Q ss_pred CCceEEEeccccceeeCHHHHHHHHHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcCCceeeecCCeEEE
Q 016600 179 TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVI 258 (386)
Q Consensus 179 ~~~~~iiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~i~~~~y~~ 258 (386)
+....+||||.....+|....+.- . +-.++.++=++|..+....+..+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~~---~----------------------------~~~~~~l~AANgt~I~tyG~~~l~ 56 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKKS---L----------------------------KPSPLTLQAANGTPIATYGTRSLT 56 (89)
T ss_pred CCcEEEEeCCCceEeecccccccc---c----------------------------cCCceEEEeCCCCeEeeeeeEEEE
Confidence 455789999999999998744331 0 111235555555555444433322
Q ss_pred EeecceeeEEEEEEccCCCceEEcceeeeeE
Q 016600 259 YGTQVVTGFCLAIQPVDGDIGTIGQNFMTGY 289 (386)
Q Consensus 259 ~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~ 289 (386)
-+-.....+-.-+.-.+-+..|||..||++|
T Consensus 57 ldlGlrr~~~w~FvvAdv~~pIlGaDfL~~~ 87 (89)
T cd06094 57 LDLGLRRPFAWNFVVADVPHPILGADFLQHY 87 (89)
T ss_pred EEcCCCcEEeEEEEEcCCCcceecHHHHHHc
Confidence 2211111222222223346789999999876
No 36
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=71.46 E-value=33 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=24.1
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIA 203 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l~ 203 (386)
+.++++ ....+.+|||.+...+|...++.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 2446899999999999999888854
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.89 E-value=6.2 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.5
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 55676655 489999999999999988764
No 38
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=4.6 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=19.6
Q ss_pred CceEEcceeeeeEEEEEecCCCEE
Q 016600 277 DIGTIGQNFMTGYRVVFDRENLKL 300 (386)
Q Consensus 277 ~~~IlG~~fl~~~yvvFD~e~~rI 300 (386)
+.-+||...++....++|....++
T Consensus 94 ~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 94 PEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred cccchhhhhhhhccEEEcCCcceE
Confidence 345999999999999999876665
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=64.86 E-value=36 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.4
Q ss_pred CceEEEeccccceeeCHHHHHHH
Q 016600 180 SFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 180 ~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
...++||||+...++-.++.+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 44699999999999999977765
No 40
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=64.66 E-value=48 Score=32.50 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred EEEEcCeeecCCCceEEEeccccceeeCHHHHHHH--HHHHHHhcccccccccccccccccccccCCCCCCCeEEEEEcC
Q 016600 168 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI--AAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQ 245 (386)
Q Consensus 168 ~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l--~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 245 (386)
++.+||..|+ |.||||+-++.+..+-.+.. ...|.+.. .... ..+| +..+-|
T Consensus 239 N~~ing~~VK-----AfVDsGaq~timS~~Caer~gL~rlid~r~-----~g~a--------------~gvg--~~ki~g 292 (380)
T KOG0012|consen 239 NCEINGVPVK-----AFVDSGAQTTIMSAACAERCGLNRLIDKRF-----QGEA--------------RGVG--TEKILG 292 (380)
T ss_pred EEEECCEEEE-----EEEcccchhhhhhHHHHHHhChHHHhhhhh-----hccc--------------cCCC--cccccc
Confidence 5667777775 89999999998887766652 22222211 1110 0112 111111
Q ss_pred CceeeecCCeEEEEeecceeeEE-EEEEccCCCceEEcceeeeeEEEEEecCCCEEEEEcCCC
Q 016600 246 NNSFVVNNPVFVIYGTQVVTGFC-LAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 307 (386)
Q Consensus 246 ~~~~~i~~~~y~~~~~~~~~~~C-l~i~~~~~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~~C 307 (386)
. |+.-..-+.+. ...| +.|....+-...||-..||++--.-|++++++-++...-
T Consensus 293 ~----Ih~~~lki~~~---~l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 293 R----IHQAQLKIEDL---YLPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred e----eEEEEEEeccE---eeccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 1 11111111111 3345 677777667799999999999999999999999887644
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=60.28 E-value=8.3 Score=30.04 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=20.4
Q ss_pred EEEcCeeecCCCceEEEeccccceeeCHHHH
Q 016600 169 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVY 199 (386)
Q Consensus 169 i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~ 199 (386)
|.++++.+ .++||||...+.++++.+
T Consensus 10 v~i~g~~i-----~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-----KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-----EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-----EEEEecCCCcceeccccc
Confidence 55666644 599999999999998743
No 42
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=59.43 E-value=18 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred ceeEEEEEeEEEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 159 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 159 ~~~y~V~l~~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
.+||.++ ..|||+.+. .++|||.|...++++....+
T Consensus 103 ~GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 4677766 678988876 89999999999999977764
No 43
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=57.26 E-value=14 Score=33.25 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCceEEcceeeeeEEEEEecCCCEEEEEcC
Q 016600 276 GDIGTIGQNFMTGYRVVFDRENLKLGWSHS 305 (386)
Q Consensus 276 ~~~~IlG~~fl~~~yvvFD~e~~rIGfa~~ 305 (386)
+-..|||.+|+|.|+=-.+.+ .+|-|-.-
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 356999999999887776665 46777653
No 44
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=56.16 E-value=82 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.6
Q ss_pred EEEEccCCCceEEcceeeeeEEEEEecCC
Q 016600 269 LAIQPVDGDIGTIGQNFMTGYRVVFDREN 297 (386)
Q Consensus 269 l~i~~~~~~~~IlG~~fl~~~yvvFD~e~ 297 (386)
+.+....+-..+||-..|+++--.-|+++
T Consensus 75 ftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 75 AQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 66776655679999999999999888874
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=50.87 E-value=19 Score=29.91 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=23.5
Q ss_pred EEEEcCeeecCCCceEEEeccccceeeCHHHHHHH
Q 016600 168 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 202 (386)
Q Consensus 168 ~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~~~~~l 202 (386)
.+.+||+.+. |+||||...+.++....+++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 3678888774 99999999999999988874
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=50.00 E-value=33 Score=25.83 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=33.7
Q ss_pred CceeeecCCCCceEeEEEEEEEEEeecCCCCcccccccccEEEeeeeeccCCCCCCCCCceEEecCC
Q 016600 40 CPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 106 (386)
Q Consensus 40 c~~~i~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~ 106 (386)
..+.+...+| ........-+.++|++. ...++.+........ ..|||||+.+
T Consensus 43 ~~~~~~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 4667777876 55556666888999886 344555544433321 3689999864
No 47
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=40.18 E-value=28 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=16.8
Q ss_pred CCceEEEeccccceeeCHHH
Q 016600 179 TSFKAIVDSGSSFTFLPKEV 198 (386)
Q Consensus 179 ~~~~~iiDSGTt~~~lP~~~ 198 (386)
..+.++||||++.+.++..-
T Consensus 10 q~~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 10 QTFNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred ceEEEEEeCCCCCEEEeCCC
Confidence 45689999999999998763
No 48
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.07 E-value=51 Score=21.05 Aligned_cols=11 Identities=55% Similarity=0.667 Sum_probs=4.4
Q ss_pred HHHHHHHhhhc
Q 016600 375 FLLLLRLLVSA 385 (386)
Q Consensus 375 ~~~~~~~~~~~ 385 (386)
|+|+|+++++|
T Consensus 8 ~~l~lLal~~a 18 (36)
T PF08194_consen 8 FALLLLALAAA 18 (36)
T ss_pred HHHHHHHHHhc
Confidence 33333334443
No 49
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.05 E-value=93 Score=29.92 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.8
Q ss_pred EEEEcCeeecCCCceEEEeccccceeeCHH
Q 016600 168 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKE 197 (386)
Q Consensus 168 ~i~v~~~~~~~~~~~~iiDSGTt~~~lP~~ 197 (386)
.|.||.- ...+.++||||++.+.+|-.
T Consensus 7 ~i~vGtP---~Q~~~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 7 DIFIGNP---PQKQSLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEecCC---CeEEEEEEeCCCCceEEecC
Confidence 4677753 24678999999999999865
No 50
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.02 E-value=1.4e+02 Score=20.63 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=18.2
Q ss_pred CceEEEeccccceeeCHHHHHH
Q 016600 180 SFKAIVDSGSSFTFLPKEVYET 201 (386)
Q Consensus 180 ~~~~iiDSGTt~~~lP~~~~~~ 201 (386)
...+++|||.+...+..+.+..
T Consensus 9 ~~~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 9 PVRALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEEEcCCCcccccCHHHHHH
Confidence 3469999999999999987664
Done!