BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016602
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
Length = 503
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 56/375 (14%)
Query: 36 AVCLDGSPPAYHFDKGFGAGINNWLVHIDGGAWCNNVEDCSKRRDSSYGSSKHMVKEANF 95
C DGSP Y+ + G+ WL+ ++GG +C N E+C DS Y + + ++ ++
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENC----DSRYSTMRRLMSSKDW 159
Query: 96 ------TGILSNEQKFNPDFYDWNRVRVRYCDGASFTGDVEAVNPETNLHFRGARVFEAV 149
TGILS++ + NP +++ N V + YC ++G + + F G+ + + V
Sbjct: 160 PHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEV 218
Query: 150 MEDLLAKGMKNAQNAILTGCSAGGLTSILHCDNFRALFPV----DTRVKCFADAGYFVNA 205
+ +LL KG+ A+ +L G SAGG +L+ D L +V+ AD+G+F++
Sbjct: 219 VRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDN 278
Query: 206 KDVSGESHIEEFY-KQVVALHGSAKH----LPASCTSRLSPGL---CFFPENVAGQIKTP 257
K I+ A+ ++ +P C + G CFF V ++ P
Sbjct: 279 KQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCP 338
Query: 258 LFIINSAYDSWQIS--NILVPEDADPKGAWSSCKVDIKTCSSTQLQTMQGFRVQFLNALA 315
+F++ +D Q++ N+ + +G W + I+ T++ + F A
Sbjct: 339 VFVVQWLFDEAQLTVDNVHLTGQPVQEGQW----LYIQNLGRELRGTLKDVQASFAPACL 394
Query: 316 GLGNSSSRGMFVDSCYTHCRTDYQET------WFSA--DSPVLDKTPIAKAVGDWYYDRS 367
S + + S +T + W + DS KTP+
Sbjct: 395 ------SHEIIIRSYWTDVQVKGTSLPRALHCWDRSFHDSHKASKTPMKGC--------- 439
Query: 368 PFQKID-CPYP-CNP 380
PF +D CP+P CNP
Sbjct: 440 PFHLVDSCPWPHCNP 454
>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
Length = 496
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 17/250 (6%)
Query: 36 AVCLDGSPPAYHFDKGFGAGINNWLVHIDGGAWCNNVEDCSKRRDS--SYGSSKHMVKEA 93
C DGSP Y+ + G+ WL+ ++GG +C N E+C R D+ SS+ +
Sbjct: 99 VTCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTR 156
Query: 94 NFTGILSNEQKFNPDFYDWNRVRVRYCDGASFTGDVEAVNPETNLHFRGARVFEAVMEDL 153
TGILS++ + NP +++ N V + YC ++G + + + F GA + + V+ +L
Sbjct: 157 TGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVREL 215
Query: 154 LAKGMKNAQNAILTGCSAGGLTSILHCD----NFRALFPVDTRVKCFADAGYFVNAKDVS 209
L +G+ A+ +L G SAGG +L+ D L +V+ AD+G+F++ K
Sbjct: 216 LGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYR 275
Query: 210 GESHIEEFY-KQVVALHGSAKH----LPASCTSRLSPGL---CFFPENVAGQIKTPLFII 261
++ A+ ++ +P C + G CFF V ++ P+F++
Sbjct: 276 HTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVV 335
Query: 262 NSAYDSWQIS 271
+D Q++
Sbjct: 336 QWLFDEAQLT 345
>sp|P26492|FLAV_DESDE Flavodoxin OS=Desulfovibrio desulfuricans PE=1 SV=1
Length = 148
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 152 DLLAKGMKNAQNAILTGCSAGGLTSILHCDNFRALFPVDTRVKCFADAGYFVNAKDVSGE 211
D A+ + + +A+L GCSA G+ + D+F +LF R+ AG V A SG+
Sbjct: 40 DASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFNRIGL---AGRKVAAF-ASGD 95
Query: 212 SHIEEFYKQVVALHGSAKHLPASCTSR 238
E F V A+ AK L A+ +
Sbjct: 96 QEYEHFCGAVPAIEERAKELGATIIAE 122
>sp|A9AMA4|ACCD_BURM1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=accD PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 124 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 169
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
>sp|B4EFK3|ACCD_BURCJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=accD PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 124 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 169
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
>sp|Q1BM67|ACCD_BURCA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia cenocepacia (strain AU 1054) GN=accD
PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 124 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 169
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,301,225
Number of Sequences: 539616
Number of extensions: 6411372
Number of successful extensions: 11826
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11813
Number of HSP's gapped (non-prelim): 8
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)