Query 016603
Match_columns 386
No_of_seqs 176 out of 1299
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 2.4E-89 5.3E-94 685.5 33.9 328 57-384 25-352 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 3.4E-85 7.3E-90 618.1 26.0 295 78-383 13-311 (347)
3 COG0180 TrpS Tryptophanyl-tRNA 100.0 2.9E-83 6.4E-88 624.1 29.3 292 76-384 3-300 (314)
4 PRK12284 tryptophanyl-tRNA syn 100.0 7.3E-81 1.6E-85 628.6 30.4 288 78-384 2-299 (431)
5 PRK00927 tryptophanyl-tRNA syn 100.0 4.1E-80 9E-85 613.2 30.0 294 78-384 1-298 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 9.9E-79 2.1E-83 608.6 31.4 299 79-384 3-364 (398)
7 PRK12556 tryptophanyl-tRNA syn 100.0 5.8E-79 1.3E-83 603.7 29.3 287 78-384 3-299 (332)
8 PRK12282 tryptophanyl-tRNA syn 100.0 3.4E-77 7.4E-82 591.6 30.3 289 78-383 2-296 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 6.3E-77 1.4E-81 589.0 29.4 289 77-384 1-298 (328)
10 cd00806 TrpRS_core catalytic c 100.0 2.2E-72 4.7E-77 546.0 27.5 274 80-370 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 4.3E-72 9.3E-77 561.0 28.7 278 76-383 64-356 (368)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 5.5E-69 1.2E-73 540.7 25.0 276 76-385 64-370 (383)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 7.8E-69 1.7E-73 531.8 24.9 273 76-385 28-327 (329)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 6.2E-65 1.3E-69 539.0 27.0 285 77-385 31-344 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 5.2E-60 1.1E-64 475.1 28.3 277 76-383 71-370 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.5E-60 3.3E-65 464.9 15.9 276 76-372 3-292 (292)
17 cd00805 TyrRS_core catalytic c 100.0 5.7E-59 1.2E-63 449.8 20.2 249 79-370 1-269 (269)
18 cd00395 Tyr_Trp_RS_core cataly 100.0 4.5E-58 9.7E-63 444.3 25.0 248 80-370 1-273 (273)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 5E-52 1.1E-56 422.0 22.7 263 77-382 32-319 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 1.9E-49 4E-54 403.1 22.0 265 76-384 31-319 (410)
21 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.5E-48 7.6E-53 367.4 16.9 267 77-381 33-334 (360)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.3E-44 2.9E-49 364.3 19.6 242 78-373 30-294 (377)
23 KOG2145 Cytoplasmic tryptophan 100.0 9.8E-43 2.1E-47 330.5 15.3 277 76-383 83-383 (397)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 6.6E-41 1.4E-45 355.9 22.0 234 101-379 399-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 3.6E-37 7.7E-42 310.3 19.5 262 78-384 32-313 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.9 7E-21 1.5E-25 187.8 17.2 255 78-373 63-351 (467)
27 cd00808 GluRS_core catalytic c 99.6 7.6E-16 1.6E-20 146.7 11.1 169 86-310 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 5.2E-13 1.1E-17 117.0 11.0 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.2 8.3E-11 1.8E-15 111.6 10.8 169 86-310 9-182 (230)
30 PRK14895 gltX glutamyl-tRNA sy 98.9 2.2E-08 4.9E-13 104.7 15.4 196 80-310 4-269 (513)
31 PRK01406 gltX glutamyl-tRNA sy 98.9 5.5E-08 1.2E-12 101.6 18.2 191 86-310 12-280 (476)
32 TIGR00464 gltX_bact glutamyl-t 98.9 1.1E-07 2.4E-12 99.2 19.4 190 86-310 9-270 (470)
33 PRK05710 glutamyl-Q tRNA(Asp) 98.8 1.4E-08 3.1E-13 99.9 9.2 173 86-288 13-241 (299)
34 cd00674 LysRS_core_class_I cat 98.8 2.2E-07 4.7E-12 93.6 16.0 193 78-299 20-288 (353)
35 PRK12410 glutamylglutaminyl-tR 98.7 3.1E-07 6.6E-12 94.7 15.1 88 86-182 7-104 (433)
36 PLN02627 glutamyl-tRNA synthet 98.7 1.7E-06 3.8E-11 91.0 20.6 199 79-311 46-323 (535)
37 PRK00750 lysK lysyl-tRNA synth 98.7 1.5E-07 3.2E-12 99.2 12.1 67 213-305 231-304 (510)
38 COG0008 GlnS Glutamyl- and glu 98.6 1.4E-07 3.1E-12 98.1 9.5 178 81-289 10-256 (472)
39 TIGR03838 queuosine_YadB gluta 98.6 8.8E-07 1.9E-11 86.3 13.0 174 86-289 8-235 (272)
40 PRK12558 glutamyl-tRNA synthet 98.5 2.8E-06 6E-11 88.0 15.6 190 86-311 10-270 (445)
41 PLN03233 putative glutamate-tR 98.5 8.1E-07 1.7E-11 93.3 10.6 175 81-288 12-251 (523)
42 cd00807 GlnRS_core catalytic c 98.5 7.4E-07 1.6E-11 85.1 9.3 155 86-288 9-169 (238)
43 cd09287 GluRS_non_core catalyt 98.4 1.6E-06 3.4E-11 83.0 9.5 158 83-288 6-171 (240)
44 PF00749 tRNA-synt_1c: tRNA sy 98.3 5.2E-06 1.1E-10 82.5 12.6 173 86-289 9-249 (314)
45 PTZ00402 glutamyl-tRNA synthet 98.3 5.4E-06 1.2E-10 88.3 13.4 177 80-288 52-293 (601)
46 PRK04156 gltX glutamyl-tRNA sy 98.3 3.7E-06 8E-11 89.3 11.9 181 78-288 101-343 (567)
47 PLN02907 glutamate-tRNA ligase 98.2 1.3E-05 2.7E-10 87.8 12.7 176 80-288 213-453 (722)
48 PLN02859 glutamine-tRNA ligase 98.2 4.6E-06 1E-10 90.9 8.2 175 81-288 265-504 (788)
49 PF01921 tRNA-synt_1f: tRNA sy 98.0 2.4E-05 5.3E-10 78.7 9.5 83 201-308 219-309 (360)
50 TIGR00467 lysS_arch lysyl-tRNA 97.9 3.9E-05 8.5E-10 81.0 10.0 80 78-160 19-128 (515)
51 cd02156 nt_trans nucleotidyl t 97.9 4.6E-05 1E-09 63.3 8.3 55 81-139 2-56 (105)
52 COG1384 LysS Lysyl-tRNA synthe 97.8 3E-05 6.6E-10 80.6 6.8 81 77-160 19-131 (521)
53 PRK01611 argS arginyl-tRNA syn 97.7 0.00017 3.7E-09 76.1 9.6 190 81-303 116-339 (507)
54 PRK05347 glutaminyl-tRNA synth 97.7 0.00012 2.7E-09 77.4 8.2 92 81-180 30-133 (554)
55 TIGR00440 glnS glutaminyl-tRNA 97.6 0.00014 2.9E-09 76.8 8.1 88 86-181 8-105 (522)
56 cd00671 ArgRS_core catalytic c 97.6 0.00018 3.9E-09 67.4 8.1 152 82-242 6-185 (212)
57 cd00672 CysRS_core catalytic c 97.6 0.001 2.2E-08 62.7 12.4 71 79-149 22-105 (213)
58 PRK14703 glutaminyl-tRNA synth 97.6 0.00019 4.2E-09 78.9 8.4 93 80-180 31-135 (771)
59 PTZ00437 glutaminyl-tRNA synth 97.6 0.00015 3.3E-09 76.9 6.9 92 80-180 53-154 (574)
60 TIGR00463 gltX_arch glutamyl-t 97.5 0.00024 5.2E-09 75.6 7.8 93 79-180 92-196 (560)
61 PRK00260 cysS cysteinyl-tRNA s 97.5 0.00091 2E-08 70.0 12.0 74 77-150 22-110 (463)
62 cd00668 Ile_Leu_Val_MetRS_core 97.5 0.00086 1.9E-08 66.2 11.0 63 87-150 11-100 (312)
63 cd00812 LeuRS_core catalytic c 97.4 0.00055 1.2E-08 67.9 8.5 64 87-150 11-87 (314)
64 TIGR00435 cysS cysteinyl-tRNA 96.8 0.022 4.7E-07 59.8 13.9 72 80-151 24-108 (465)
65 PLN02946 cysteine-tRNA ligase 95.9 0.1 2.2E-06 56.0 12.6 74 75-149 77-165 (557)
66 KOG1149 Glutamyl-tRNA syntheta 95.5 0.022 4.7E-07 58.6 5.6 95 79-180 34-145 (524)
67 COG0143 MetG Methionyl-tRNA sy 93.9 0.21 4.6E-06 53.5 8.3 83 78-163 6-102 (558)
68 PRK00133 metG methionyl-tRNA s 93.8 0.17 3.8E-06 55.4 7.8 73 78-150 3-89 (673)
69 PF09334 tRNA-synt_1g: tRNA sy 93.6 0.27 5.9E-06 50.4 8.2 75 86-163 9-96 (391)
70 PLN02224 methionine-tRNA ligas 92.9 0.56 1.2E-05 51.1 9.8 73 78-150 70-156 (616)
71 TIGR00234 tyrS tyrosyl-tRNA sy 92.3 0.16 3.4E-06 52.0 4.4 14 330-343 283-296 (377)
72 KOG1147 Glutamyl-tRNA syntheta 91.9 0.58 1.3E-05 49.7 7.8 77 78-162 198-277 (712)
73 PRK12268 methionyl-tRNA synthe 90.0 0.75 1.6E-05 49.1 6.9 71 80-151 5-92 (556)
74 PRK00390 leuS leucyl-tRNA synt 88.9 1.7 3.6E-05 48.9 8.9 72 78-150 33-119 (805)
75 PLN02610 probable methionyl-tR 88.4 2.5 5.5E-05 47.4 9.9 73 78-150 18-105 (801)
76 TIGR00398 metG methionyl-tRNA 87.3 1.1 2.4E-05 47.5 6.0 64 87-150 10-86 (530)
77 cd00814 MetRS_core catalytic c 87.2 1.2 2.7E-05 44.1 5.9 65 87-151 11-88 (319)
78 PRK11893 methionyl-tRNA synthe 86.7 2 4.3E-05 45.2 7.4 64 87-150 12-88 (511)
79 PRK05743 ileS isoleucyl-tRNA s 86.0 0.51 1.1E-05 53.6 2.8 58 214-297 543-603 (912)
80 PRK12267 methionyl-tRNA synthe 86.0 1.8 3.9E-05 47.2 6.9 65 86-150 14-91 (648)
81 COG0495 LeuS Leucyl-tRNA synth 85.7 1.4 3E-05 49.4 5.8 73 77-151 34-124 (814)
82 cd00817 ValRS_core catalytic c 85.5 0.57 1.2E-05 47.9 2.6 35 87-121 12-51 (382)
83 cd00818 IleRS_core catalytic c 85.5 1.4 3.1E-05 44.2 5.4 36 87-122 12-52 (338)
84 PRK14536 cysS cysteinyl-tRNA s 84.0 6.5 0.00014 41.8 9.7 77 74-150 19-119 (490)
85 PRK11893 methionyl-tRNA synthe 83.8 0.55 1.2E-05 49.3 1.7 59 216-299 254-312 (511)
86 TIGR00396 leuS_bact leucyl-tRN 83.1 3 6.4E-05 47.2 7.1 71 79-149 31-115 (842)
87 cd00818 IleRS_core catalytic c 82.9 0.92 2E-05 45.5 2.8 61 215-298 251-311 (338)
88 PRK12418 cysteinyl-tRNA synthe 82.0 1 2.2E-05 46.3 2.8 75 200-298 198-273 (384)
89 PF00133 tRNA-synt_1: tRNA syn 81.9 0.95 2.1E-05 49.0 2.6 60 215-297 513-572 (601)
90 PLN02563 aminoacyl-tRNA ligase 81.6 9.6 0.00021 43.8 10.5 74 78-151 111-201 (963)
91 PRK14900 valS valyl-tRNA synth 81.5 1.1 2.4E-05 51.7 3.1 61 215-299 490-551 (1052)
92 PRK12300 leuS leucyl-tRNA synt 80.3 1 2.3E-05 51.1 2.3 61 215-299 529-590 (897)
93 TIGR00392 ileS isoleucyl-tRNA 80.2 1.2 2.6E-05 50.3 2.7 59 215-299 563-624 (861)
94 TIGR00456 argS arginyl-tRNA sy 79.8 1.9 4.1E-05 46.4 4.0 72 208-306 312-392 (566)
95 cd00817 ValRS_core catalytic c 79.7 4.2 9.2E-05 41.5 6.3 58 216-298 296-355 (382)
96 PRK05729 valS valyl-tRNA synth 79.5 1.3 2.7E-05 50.2 2.6 60 215-299 472-533 (874)
97 TIGR03447 mycothiol_MshC cyste 77.6 1.6 3.4E-05 45.3 2.4 72 77-148 35-120 (411)
98 PRK13208 valS valyl-tRNA synth 77.4 1.9 4.1E-05 48.3 3.2 60 216-299 486-546 (800)
99 cd00814 MetRS_core catalytic c 76.8 1.7 3.7E-05 43.1 2.4 58 216-298 235-292 (319)
100 TIGR00395 leuS_arch leucyl-tRN 76.3 1.6 3.4E-05 49.9 2.2 73 215-311 572-650 (938)
101 PLN02959 aminoacyl-tRNA ligase 75.2 2.3 4.9E-05 49.4 3.1 62 215-299 670-731 (1084)
102 PTZ00419 valyl-tRNA synthetase 74.6 4 8.7E-05 46.9 4.9 45 78-122 61-111 (995)
103 PLN02943 aminoacyl-tRNA ligase 74.1 2.5 5.4E-05 48.5 3.1 70 215-309 535-611 (958)
104 PRK13208 valS valyl-tRNA synth 73.5 4.6 0.0001 45.3 4.9 71 78-148 39-136 (800)
105 TIGR00422 valS valyl-tRNA synt 73.4 2.6 5.7E-05 47.6 3.0 60 215-299 477-538 (861)
106 PF01406 tRNA-synt_1e: tRNA sy 73.0 3.1 6.8E-05 41.4 3.1 75 76-150 6-94 (300)
107 PRK12267 methionyl-tRNA synthe 72.9 1.9 4.1E-05 47.1 1.7 69 216-309 254-327 (648)
108 KOG1148 Glutaminyl-tRNA synthe 72.2 5.2 0.00011 43.2 4.6 98 80-185 248-356 (764)
109 PLN02843 isoleucyl-tRNA synthe 72.2 6.2 0.00013 45.4 5.6 75 78-152 33-137 (974)
110 PTZ00419 valyl-tRNA synthetase 72.1 3.5 7.6E-05 47.4 3.7 58 215-297 537-596 (995)
111 PLN02381 valyl-tRNA synthetase 71.7 3 6.4E-05 48.4 3.0 59 215-298 607-667 (1066)
112 PLN02286 arginine-tRNA ligase 71.2 5.1 0.00011 43.4 4.4 66 218-303 330-395 (576)
113 KOG0436 Methionyl-tRNA synthet 70.8 24 0.00052 36.9 8.8 66 86-151 49-127 (578)
114 PRK13804 ileS isoleucyl-tRNA s 70.4 1.8 4E-05 49.5 1.0 16 213-228 580-595 (961)
115 PLN02563 aminoacyl-tRNA ligase 70.2 5.7 0.00012 45.6 4.7 27 215-241 615-642 (963)
116 COG0018 ArgS Arginyl-tRNA synt 69.5 4.5 9.7E-05 43.8 3.6 68 218-308 337-405 (577)
117 COG0018 ArgS Arginyl-tRNA synt 69.5 4.9 0.00011 43.5 3.9 42 82-123 123-170 (577)
118 TIGR00422 valS valyl-tRNA synt 69.0 7.1 0.00015 44.2 5.2 45 78-122 34-84 (861)
119 PLN02843 isoleucyl-tRNA synthe 68.9 3.3 7.2E-05 47.5 2.5 16 213-228 561-576 (974)
120 PRK06039 ileS isoleucyl-tRNA s 67.9 3.9 8.5E-05 46.9 2.9 61 215-298 544-604 (975)
121 COG2442 Uncharacterized conser 66.5 16 0.00035 29.2 5.3 41 327-369 31-71 (79)
122 PLN02224 methionine-tRNA ligas 66.4 8.6 0.00019 42.0 5.0 70 216-310 321-395 (616)
123 PRK12268 methionyl-tRNA synthe 66.3 3.4 7.3E-05 44.2 1.8 58 218-299 289-347 (556)
124 PRK14536 cysS cysteinyl-tRNA s 65.9 4 8.6E-05 43.3 2.3 75 200-299 217-292 (490)
125 COG0525 ValS Valyl-tRNA synthe 65.5 4 8.7E-05 46.0 2.3 37 87-123 44-84 (877)
126 PLN02882 aminoacyl-tRNA ligase 65.4 5.3 0.00011 46.8 3.3 59 215-296 566-624 (1159)
127 PRK05729 valS valyl-tRNA synth 65.3 8.2 0.00018 43.8 4.7 44 79-122 38-87 (874)
128 PTZ00399 cysteinyl-tRNA-synthe 64.4 3.4 7.3E-05 45.4 1.4 81 205-309 257-343 (651)
129 PF00750 tRNA-synt_1d: tRNA sy 63.6 8 0.00017 39.2 3.9 73 217-310 240-312 (354)
130 COG0495 LeuS Leucyl-tRNA synth 63.4 5.6 0.00012 44.7 2.9 63 216-299 526-592 (814)
131 PRK12451 arginyl-tRNA syntheta 63.3 8.3 0.00018 41.6 4.1 63 217-303 326-388 (562)
132 TIGR03447 mycothiol_MshC cyste 62.9 45 0.00098 34.7 9.2 74 200-297 225-299 (411)
133 TIGR00398 metG methionyl-tRNA 62.5 5.7 0.00012 42.2 2.7 55 219-299 285-340 (530)
134 COG0215 CysS Cysteinyl-tRNA sy 62.3 4.1 8.8E-05 42.9 1.5 82 200-305 205-292 (464)
135 TIGR00396 leuS_bact leucyl-tRN 61.5 6 0.00013 44.7 2.8 25 215-239 519-544 (842)
136 cd02168 NMNAT_Nudix Nicotinami 61.4 25 0.00055 32.2 6.4 75 85-169 8-85 (181)
137 TIGR00456 argS arginyl-tRNA sy 61.4 7.8 0.00017 41.7 3.5 42 80-121 116-163 (566)
138 PLN02943 aminoacyl-tRNA ligase 60.0 10 0.00022 43.5 4.4 45 78-122 89-139 (958)
139 PRK14534 cysS cysteinyl-tRNA s 59.8 27 0.00057 37.2 7.0 72 78-150 21-117 (481)
140 PRK00390 leuS leucyl-tRNA synt 59.2 6.8 0.00015 44.1 2.7 24 215-238 522-546 (805)
141 PRK12418 cysteinyl-tRNA synthe 59.2 50 0.0011 34.0 8.8 73 78-150 9-96 (384)
142 KOG0435 Leucyl-tRNA synthetase 58.1 6.6 0.00014 43.1 2.2 74 77-151 57-147 (876)
143 PRK12451 arginyl-tRNA syntheta 56.4 9.8 0.00021 41.0 3.2 38 82-119 119-162 (562)
144 PF00133 tRNA-synt_1: tRNA syn 55.9 13 0.00028 40.4 4.1 45 78-122 24-74 (601)
145 PRK14900 valS valyl-tRNA synth 55.1 7.5 0.00016 45.1 2.2 45 78-122 49-99 (1052)
146 PRK14534 cysS cysteinyl-tRNA s 54.7 7 0.00015 41.4 1.7 67 208-299 225-292 (481)
147 PLN02286 arginine-tRNA ligase 54.7 8.8 0.00019 41.5 2.6 38 82-119 123-166 (576)
148 PLN02381 valyl-tRNA synthetase 52.4 9.4 0.0002 44.4 2.4 45 78-122 129-179 (1066)
149 PLN02660 pantoate--beta-alanin 51.8 59 0.0013 32.2 7.5 69 215-313 145-213 (284)
150 PTZ00427 isoleucine-tRNA ligas 50.9 21 0.00046 42.1 5.0 73 199-296 654-730 (1205)
151 PF02662 FlpD: Methyl-viologen 50.0 72 0.0016 27.4 7.0 70 84-159 33-103 (124)
152 PF04255 DUF433: Protein of un 49.2 19 0.00041 26.5 2.9 34 329-364 21-54 (56)
153 PRK05743 ileS isoleucyl-tRNA s 48.9 11 0.00023 43.2 2.1 74 78-151 50-152 (912)
154 TIGR00392 ileS isoleucyl-tRNA 48.0 11 0.00025 42.5 2.2 46 77-122 36-87 (861)
155 COG0060 IleS Isoleucyl-tRNA sy 47.9 23 0.00049 40.6 4.4 63 217-308 556-620 (933)
156 cd02166 NMNAT_Archaea Nicotina 47.5 95 0.0021 27.7 7.7 66 85-160 8-77 (163)
157 PF00750 tRNA-synt_1d: tRNA sy 45.7 8.7 0.00019 38.9 0.7 40 82-121 26-71 (354)
158 PRK14535 cysS cysteinyl-tRNA s 45.4 1.2E+02 0.0025 33.9 9.2 77 74-150 244-334 (699)
159 PLN02959 aminoacyl-tRNA ligase 44.9 27 0.0006 40.7 4.7 30 87-116 56-89 (1084)
160 TIGR00395 leuS_arch leucyl-tRN 44.4 11 0.00024 43.2 1.3 39 78-116 26-69 (938)
161 PLN02610 probable methionyl-tR 43.6 6.7 0.00015 44.2 -0.5 31 260-298 330-360 (801)
162 PF09334 tRNA-synt_1g: tRNA sy 43.3 5.1 0.00011 41.2 -1.4 30 260-297 309-338 (391)
163 PRK00133 metG methionyl-tRNA s 42.2 9.5 0.00021 42.0 0.4 32 260-299 311-342 (673)
164 KOG0432 Valyl-tRNA synthetase 41.0 30 0.00065 39.2 3.9 20 272-296 584-603 (995)
165 PRK13804 ileS isoleucyl-tRNA s 39.0 19 0.00041 41.5 2.2 45 78-122 55-105 (961)
166 PF01406 tRNA-synt_1e: tRNA sy 35.7 2.6E+02 0.0055 28.0 9.2 73 202-299 192-265 (300)
167 PTZ00427 isoleucine-tRNA ligas 34.8 26 0.00057 41.3 2.5 45 78-122 103-153 (1205)
168 PRK06039 ileS isoleucyl-tRNA s 33.1 26 0.00057 40.3 2.1 45 78-122 42-92 (975)
169 COG0525 ValS Valyl-tRNA synthe 30.7 17 0.00037 41.2 0.1 21 272-297 516-536 (877)
170 PLN02882 aminoacyl-tRNA ligase 30.7 34 0.00073 40.3 2.5 45 78-122 39-89 (1159)
171 PRK14535 cysS cysteinyl-tRNA s 29.7 18 0.00038 40.1 0.0 38 200-239 430-468 (699)
172 KOG0432 Valyl-tRNA synthetase 29.1 42 0.00092 38.1 2.8 36 88-123 87-126 (995)
173 PLN02413 choline-phosphate cyt 28.8 1.5E+02 0.0032 29.5 6.2 35 67-106 16-53 (294)
174 TIGR00018 panC pantoate--beta- 27.1 2.7E+02 0.0059 27.5 7.8 69 215-313 142-210 (282)
175 PTZ00399 cysteinyl-tRNA-synthe 26.2 3.2E+02 0.0069 30.3 8.9 75 76-151 58-149 (651)
176 COG4320 Uncharacterized protei 26.0 46 0.00099 33.7 2.1 27 88-120 62-88 (410)
177 COG0143 MetG Methionyl-tRNA sy 24.3 30 0.00065 37.4 0.6 28 279-310 330-362 (558)
178 KOG2007 Cysteinyl-tRNA synthet 23.8 47 0.001 35.5 1.8 85 199-309 241-333 (586)
179 COG1908 FrhD Coenzyme F420-red 22.8 3.1E+02 0.0067 24.0 6.3 66 85-159 35-104 (132)
180 PRK01153 nicotinamide-nucleoti 20.8 4.2E+02 0.0091 24.0 7.3 26 85-117 9-35 (174)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.4e-89 Score=685.47 Aligned_cols=328 Identities=78% Similarity=1.196 Sum_probs=303.9
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 016603 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (386)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~ 136 (386)
+|+++.++..+.++.+++.-.+.+||+||||||.+|||||+|++++|++||++++++|+||||||+|.+.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 44455554555556666665567999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcc
Q 016603 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (386)
Q Consensus 137 ~~~~~~lA~Gldp~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~ 216 (386)
+++++|+|+||||+|+.||+||++++|.+++|+|+|.+++++|+|++|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred cceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 217 adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
+|+||||+||+||+|||||||+|||+.||....+++|++++.+|++|++++++.+++||||+||++|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998665667777777889999999987668999998888899999997789999
Q ss_pred ccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHH
Q 016603 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQS 376 (386)
Q Consensus 297 L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~ 376 (386)
|+|+|++|++|||+|+||+.+++++++|++|+++|++.+|..+++.+++|++++|+++++++||+.|+++|+++|+|||+
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire 344 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV 344 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 016603 377 WQMALQKL 384 (386)
Q Consensus 377 r~~~~~~~ 384 (386)
||+++++.
T Consensus 345 r~~~l~~d 352 (389)
T PLN02886 345 RYEEIMSD 352 (389)
T ss_pred HHHHHHcC
Confidence 99998753
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-85 Score=618.13 Aligned_cols=295 Identities=54% Similarity=0.812 Sum_probs=284.3
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC----cEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~----~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~ 153 (386)
+.+||+||||||.+|||||+|++++|++||+.+ .|+|+|+|+||+|.|.++..+++++.++++.++||||||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 679999999999999999999999999999844 4799999999999999999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHH
Q 016603 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (386)
Q Consensus 154 i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~ela 233 (386)
+|+||++++|.|+.|+|+|.+++++|+||+|||++..+.+.+++++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999876666789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhccc
Q 016603 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (386)
Q Consensus 234 Rdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~T 313 (386)
|++|++||..||+++ |++|+.++...++++++|+||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~~~-----------fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTEI-----------FPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCee-----------ecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 999999999999754 999999998756999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhh
Q 016603 314 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQK 383 (386)
Q Consensus 314 d~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~ 383 (386)
|....++||+.+||+|+|++.||..+++.+.+|+.+++.+++++++|..||++|++.|.|||++|+++..
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~ 311 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELIN 311 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864
No 3
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-83 Score=624.08 Aligned_cols=292 Identities=50% Similarity=0.784 Sum_probs=274.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHcCCCCCCc
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA 152 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~--~~i~~~~~~~~~~~lA~Gldp~k~ 152 (386)
..+++|+||++|||.||||||+|++++|+++|++ ++|+|+|||+||+|.+.++ +.+++++++++++|+|+||||+|+
T Consensus 3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3578999999999999999999999999999998 5999999999999997766 899999999999999999999999
Q ss_pred EEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHH
Q 016603 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (386)
Q Consensus 153 ~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~el 232 (386)
.||+||++++|.+|+|+|+|.+++++|+|+++||++..+.+ +++++|+|.||+|||||||+|++++||||.||+||+||
T Consensus 83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 99999999999999999999999999999999999987765 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcc
Q 016603 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (386)
Q Consensus 233 aRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~ 312 (386)
|||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+| +|+|+|+|+|++|++||++|.
T Consensus 162 tRDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~--ns~I~L~D~~~~i~kKI~~~~ 225 (314)
T COG0180 162 TRDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDP--NSAIFLLDDPKTIRKKIKKAA 225 (314)
T ss_pred HHHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCC--CCeeeccCCHHHHHHHHHHhc
Confidence 99999999999984 599999999976 799999665 89999997 489999999999999999999
Q ss_pred cCCCCCcccCCCCCCCcchHHHHHHhcC-CCCHHHHHHHHcc--CChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 313 TDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 313 Td~~~~i~~~~~~~p~v~nll~i~~~~~-~~~~eel~~~~~~--l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
||+...++++++++|+++|+|+||.++. +++.+|++++|.+ +.+++||+.|++.|+++|+|||+||+++.+.
T Consensus 226 td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~ 300 (314)
T COG0180 226 TDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELRED 300 (314)
T ss_pred cCCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9996667778899999999999999998 8999999999954 9999999999999999999999999998753
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.3e-81 Score=628.62 Aligned_cols=288 Identities=35% Similarity=0.588 Sum_probs=265.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~--~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
..+|||||+|||.+|||||+|++++|+++|+ +++++|+||||||+|++.+++++++++++++++|+||||||+|+.||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3589999999999999999999999999975 89999999999999988899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhh---C---CCCcccccchhhHHHhhhhhhcccceeecccchhHH
Q 016603 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (386)
Q Consensus 156 ~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~---~---~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h 229 (386)
+||++++|.+++|+|+|.+++++|+|+++||++..+. + .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875432 1 245899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhh
Q 016603 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (386)
Q Consensus 230 ~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (386)
+|||||||+|||+.||.+ +|++|++++...+++|||| || +|||||+ +|+|+|+|+|++|++||+
T Consensus 162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 999999999999999743 3899999887666899999 66 6999998 589999999999999999
Q ss_pred hcccCCCCCcccCCCCCCCcchHHHHHHhcCC-CCHHHHHHHHc-cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 310 kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~-~~~eel~~~~~-~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+|+||+.+ .+++++|+++|+++||+.+++ ++++|++++|. +++|++||+.|+++|+++|+|||+||+++.+.
T Consensus 226 ~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d 299 (431)
T PRK12284 226 SIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIAR 299 (431)
T ss_pred cCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999865 245788999999999999975 67999999995 78999999999999999999999999999764
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-80 Score=613.19 Aligned_cols=294 Identities=56% Similarity=0.903 Sum_probs=274.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
++++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+|
T Consensus 1 ~~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~q 80 (333)
T PRK00927 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQ 80 (333)
T ss_pred CCEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEe
Confidence 36899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia 237 (386)
|+|++|.+++|+++|.+++++|+|+++||++..+.+ +++++|+|+||+||||||+++++|+||||+||+||+|||||||
T Consensus 81 S~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia 159 (333)
T PRK00927 81 SHVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIA 159 (333)
T ss_pred CCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHH
Confidence 999999999999999999999999999998764433 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCC
Q 016603 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (386)
Q Consensus 238 ~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (386)
++||+.||. +|++|+++++..+++||||+++++|||||+|+++|+|+|+|+|++|++||++|+||+..
T Consensus 160 ~~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 160 RRFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred HHhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 999999874 48899999976568999996555699999986669999999999999999999999976
Q ss_pred C--cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 318 G--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 318 ~--i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+ +.++++++|+++|+++||++|++++++|++++|. +++|+|||+.|+++|+++|+|+|++|+++++.
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~ 298 (333)
T PRK00927 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLAD 298 (333)
T ss_pred ccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3 4578899999999999999999999999999995 79999999999999999999999999999763
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.9e-79 Score=608.61 Aligned_cols=299 Identities=35% Similarity=0.610 Sum_probs=270.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
.+|||||||||.+|||||+|++++|+++|++++++|+||||||+|++ .+++++++++++++++|+|+||||+|+.||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 57999999999999999999999999999999999999999999985 49999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdi 236 (386)
|++++|++|+|+|+|.+++++|+|+++||++..+.+ .+++++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876531 3568999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCccc----------------------------------------------------------cccCCCCCc
Q 016603 237 AERVNYLYGGRKW----------------------------------------------------------KKLGGRGGA 258 (386)
Q Consensus 237 a~k~n~~yg~~~~----------------------------------------------------------~~~g~~~~~ 258 (386)
|+|||+.||...+ ....+.++.
T Consensus 163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T PRK12283 163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242 (398)
T ss_pred HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence 9999999985210 011234556
Q ss_pred cccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHh
Q 016603 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL 338 (386)
Q Consensus 259 ~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~ 338 (386)
+|++|+++++.. ++|||| || +|||||+ +|+|+|+|+|++|++||++|+||+..... ..+++|+++|+++||.+
T Consensus 243 ~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~-~~~g~Pe~~nl~~i~~~ 315 (398)
T PRK12283 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRR-TDPGDPEKCPVWQLHQV 315 (398)
T ss_pred ccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCccccc-CCCCCCCcCHHHHHHHH
Confidence 799999988664 999999 88 7999996 58999999999999999999999876544 45599999999999999
Q ss_pred cCCC-CHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 339 ISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 339 ~~~~-~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
++++ +.+++.++|. ++.+++||+.|++.|+++|+|||+|++++++.
T Consensus 316 ~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~ 364 (398)
T PRK12283 316 YSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDD 364 (398)
T ss_pred hCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9877 5899999994 57899999999999999999999999998764
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-79 Score=603.74 Aligned_cols=287 Identities=36% Similarity=0.585 Sum_probs=262.9
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC--cEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~--~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
+.+|||||||||.+|||||+|++++|+++|+.+ +++|+||||||+|.+++++++++++++++++|+|+||||+|+.||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 468999999999999999999999999998744 599999999999877899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC------CCCcccccchhhHHHhhhhhhcccceeecccchhHH
Q 016603 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (386)
Q Consensus 156 ~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~------~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h 229 (386)
+||++++|.+|+|+++|.++++||+|+++||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 246799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhh
Q 016603 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (386)
Q Consensus 230 ~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (386)
+|||||||+|||+.||. .|++|++++++..+++||| || +|||||+ +|+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~---~n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSY---GNVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCC---CCcccccCCHHHHHHHHH
Confidence 99999999999999984 4888999876555889999 77 6999998 478999999999999999
Q ss_pred hcccCCCCCcccCCCCCCCcchHHHHHHhcCC-CCHHHHHHHHc-cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 310 kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~-~~~eel~~~~~-~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+|+||+.+ .+.+++|+++|+++||+.|.+ +++++++++|. +++|++||++||+.|+++|+|+|++|+++...
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~ 299 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNE 299 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999865 245788999999999999875 67899999996 78999999999999999999999999999753
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=3.4e-77 Score=591.58 Aligned_cols=289 Identities=33% Similarity=0.518 Sum_probs=268.4
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
+.+||||++|||.+|||||++++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|+.||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999998889999999999997 67999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHH
Q 016603 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (386)
Q Consensus 157 qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRd 235 (386)
||+|++|.++.|.++|.+++++|+|+.+||++....+ ++++++|+++||+||||||++|++|+||||+||+||+|||||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCC
Q 016603 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (386)
Q Consensus 236 ia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~ 315 (386)
+|++||+.||+. +|..|++++.. +++|||| +|.+|||||+ +|+|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~---~~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSL---GNAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCC---CCeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999998854 38889988765 4899999 7778999998 479999999999999999999998
Q ss_pred CCCcccCCCCCCCcchHHHHHHhc--CCCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhh
Q 016603 316 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQK 383 (386)
Q Consensus 316 ~~~i~~~~~~~p~v~nll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~ 383 (386)
.. ++++++++|+++|+++|+++| +++++++++++|+ +++++|||++|+++|+++|+|+|+|++++++
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~ 296 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAK 296 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 54 778899999999999999999 5789999999994 6899999999999999999999999999875
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.3e-77 Score=589.03 Aligned_cols=289 Identities=45% Similarity=0.649 Sum_probs=266.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
.++++|+|++|||.+|||||+++++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+|+||||+|+.|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999998888999999999999999865 8899999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHH
Q 016603 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (386)
Q Consensus 155 ~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaR 234 (386)
|+||++++|+++.|+++|.+|+++|+|+.+||++.. + +++++|+|+||+|||||||++++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~--~-~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ--A-ENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc--C-CCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 2 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccC
Q 016603 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (386)
Q Consensus 235 dia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td 314 (386)
|+|+|||+.||. +|++|++++++..++|||| +| +|||||+| +|+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~--~s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDP--NSAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCC--CCeEeecCCHHHHHHHHHhcCCC
Confidence 999999999973 4889999998766889998 56 79999996 48999999999999999999999
Q ss_pred CCCCcccCCCCCCCcchHHHHHHhcC-----CCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 315 SSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 315 ~~~~i~~~~~~~p~v~nll~i~~~~~-----~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+.+.+.++++++|+++|++.+|+++. ++++++++++| ++++|+|||+.|+++|+++|+|||+||+++.+.
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~ 298 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE 298 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888889889999888888887664 45689999999 468999999999999999999999999988763
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=2.2e-72 Score=546.04 Aligned_cols=274 Identities=46% Similarity=0.750 Sum_probs=256.6
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
++|||++|||.+|||||++++.+|++||+ |++++|+|||+||+|++. +++++++++++++++|+|+||||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 999999999999999976 9999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia 237 (386)
|++++|.++.|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||+++++|+||||+||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999988653 36789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCC
Q 016603 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (386)
Q Consensus 238 ~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (386)
+|||++||. .|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+..
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999998873 48999999986 4899999776689999986 69999999999999999999999988
Q ss_pred CcccCCCCCCCcchHHHHHHhcCCCCHHHHH--HHH--ccCChhhHHHHHHHHHHHh
Q 016603 318 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EEC--QNMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 318 ~i~~~~~~~p~v~nll~i~~~~~~~~~eel~--~~~--~~l~~~dlK~~Lae~I~~~ 370 (386)
++.++.+++|+++|+++||..+++.+.++++ ++| ++++++++|+.||++|+++
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7788999999999999999999988888888 666 5799999999999999863
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.3e-72 Score=561.00 Aligned_cols=278 Identities=26% Similarity=0.332 Sum_probs=257.5
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~ 153 (386)
++++++|||++|||.||||||++ +.+|++||+ |++++|+||||||+++ ..+++++++++++++++|+|+||||+|+.
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~ 142 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE 142 (368)
T ss_pred CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 35789999999999999999986 679999999 7999999999999998 67999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhh------cccceeecccchh
Q 016603 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK 227 (386)
Q Consensus 154 i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~------~~adivpvG~DQ~ 227 (386)
||+||+++++.++.|.++|.+++++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+
T Consensus 143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~ 214 (368)
T PRK12285 143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD 214 (368)
T ss_pred EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence 999999999999999999999999999998875 46799999999999999999 7889999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHH
Q 016603 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (386)
Q Consensus 228 ~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (386)
||+|||||+|+|||+.|| |++|+++++ +++||| +| +|||||+| +|+|+|+|||++|++|
T Consensus 215 ~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kK 273 (368)
T PRK12285 215 PHIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKK 273 (368)
T ss_pred HHHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999999987 678999987 689999 66 69999997 6999999999999999
Q ss_pred hhhcccCCCCCccc--CCCCCCCcchHHHHHHhcC---CCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHH
Q 016603 308 IKRCKTDSSAGLEF--DNLERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMA 380 (386)
Q Consensus 308 I~kA~Td~~~~i~~--~~~~~p~v~nll~i~~~~~---~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~ 380 (386)
|++|+||+..++++ ..+++|+++++++|+.++. +++++|++++|+ +++|+|||+.|+++|+++|+|+|+|+++
T Consensus 274 I~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~ 353 (368)
T PRK12285 274 IMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREE 353 (368)
T ss_pred HHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987664 3467899999999999874 578999999994 5899999999999999999999999998
Q ss_pred Hhh
Q 016603 381 LQK 383 (386)
Q Consensus 381 ~~~ 383 (386)
+++
T Consensus 354 ~~~ 356 (368)
T PRK12285 354 ARE 356 (368)
T ss_pred HHH
Confidence 875
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-69 Score=540.74 Aligned_cols=276 Identities=22% Similarity=0.318 Sum_probs=241.9
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
.++++||+||+|||++||||++..+.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 467899999999999999995443358999999 89999999999999983 68999999999999999999999999
Q ss_pred cEEEEccc-chhhhHHHHHHhcc----cCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 016603 152 ASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (386)
Q Consensus 152 ~~i~~qS~-~~~~~~l~w~l~~~----~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ 226 (386)
++||+||+ +++|.+++|.+.+. +++++|+|+.+++.+.. .++.++|+|+||+||||||+++++|+||||+||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 57899999998875 59999999998765422 256789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 227 ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
+||++||||+|++||+.| .|..++. ++||||+||++|||||+| +++|+|+|+|++|++
T Consensus 221 ~~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~k 278 (383)
T PTZ00126 221 RKVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNR 278 (383)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHH
Confidence 999999999999999532 3554443 789999888899999997 689999999999999
Q ss_pred HhhhcccCCCCCcccCCCCCCCcchHHHHHHhc--------------------CCCCHHHHHHHHc--cCChhhHHHHHH
Q 016603 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQ--NMNWGTFKPLLT 364 (386)
Q Consensus 307 KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~--------------------~~~~~eel~~~~~--~l~~~dlK~~La 364 (386)
|||+|+||+. .++.+++++|++.+ ++.+++|++++|. .+||+|||++||
T Consensus 279 KI~kA~t~p~---------~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~la 349 (383)
T PTZ00126 279 KIKKAYCPPG---------VIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALA 349 (383)
T ss_pred HHHhCcCCCC---------CCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999853 44566788887753 2358999999994 689999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcc
Q 016603 365 DALIEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 365 e~I~~~L~pir~r~~~~~~~~ 385 (386)
++|+++|+|||++|++-.+||
T Consensus 350 e~i~~~L~PIRe~~~~~~e~~ 370 (383)
T PTZ00126 350 KYLNLMLQPVRDHFQNNPEAK 370 (383)
T ss_pred HHHHHHHHHHHHHHHcCHHHH
Confidence 999999999999999888886
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.8e-69 Score=531.84 Aligned_cols=273 Identities=25% Similarity=0.359 Sum_probs=243.4
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~ 153 (386)
.+++++|+||+|||.+||||+++ +.+|++||+ |++++|+||||||++++ .+++.+++++++++++|+|+|+||+|+.
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~ 106 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 35789999999999999999875 689999999 99999999999999995 6999999999999999999999999999
Q ss_pred EEEcccchhhhH---HHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHH
Q 016603 154 VFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (386)
Q Consensus 154 i~~qS~~~~~~~---l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~ 230 (386)
||+||+|++|.+ +.|.++|.+++++|+|+.+++.+ . . ++.++|+|+||+||||||++|++|+||||.||+||+
T Consensus 107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 999999988764 44449999999999998887642 1 2 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhh
Q 016603 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (386)
Q Consensus 231 elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k 310 (386)
+||||+|++||+ .+|.+++. ++||||+++++|||||+| +|+|+|+|+|++|++||++
T Consensus 183 ~l~Rdia~~~n~------------------~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~k 239 (329)
T PRK08560 183 MLAREVLPKLGY------------------KKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239 (329)
T ss_pred HHHHHhhHhcCC------------------CCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHh
Confidence 999999999983 34777776 689999655569999996 6999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCcchHHHHHHhcCC--------------------CCHHHHHHHHc--cCChhhHHHHHHHHHH
Q 016603 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKPLLTDALI 368 (386)
Q Consensus 311 A~Td~~~~i~~~~~~~p~v~nll~i~~~~~~--------------------~~~eel~~~~~--~l~~~dlK~~Lae~I~ 368 (386)
|+||+ +.++.+|+++|++.+.. ++++|++++|. .++|+|||++||++|+
T Consensus 240 A~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~ 310 (329)
T PRK08560 240 AYCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLI 310 (329)
T ss_pred ccCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99985 35677889999987642 57899999994 5899999999999999
Q ss_pred HhhHHHHHHHHHHhhcc
Q 016603 369 EHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 369 ~~L~pir~r~~~~~~~~ 385 (386)
++|+|||++|++..+|+
T Consensus 311 ~~l~pir~~~~~~~~~~ 327 (329)
T PRK08560 311 EILEPVREYLEEGPELL 327 (329)
T ss_pred HHHHHHHHHHhCChhhh
Confidence 99999999999988875
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.2e-65 Score=539.02 Aligned_cols=285 Identities=22% Similarity=0.344 Sum_probs=248.9
Q ss_pred CCceEEEeeCCCCcchhhhH-HHHHHHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016603 77 VKKRIVSGVQPTGSIHLGNY-LGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGny-l~~i~~~~~lQ~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k~ 152 (386)
+++++|+||+|||++||||+ +++++.|..+|.|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 46899999999999999994 66667777678899999999999999973 478999998999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC--CCCcccccchhhHHHhhhhhhcccceeecccchhHH
Q 016603 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (386)
Q Consensus 153 ~i~~qS~-~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~--~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h 229 (386)
.||+||+ +++|.+++|.+ .++++++.++.++|++.+..+ ++++++|+++||+||||||+++++|+||||+||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999997 78899999998 477899999999887643232 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhh
Q 016603 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (386)
Q Consensus 230 ~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (386)
+|||||+|++||+.| +|..+.. ++||||++|++|||||+| +|+|+|+|+|++|++||+
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999988432 2443333 789999777789999997 699999999999999999
Q ss_pred hcccCCCC--CcccCCCCCC----CcchHHHHHHhcC-----------C---CCHHHHHHHH--ccCChhhHHHHHHHHH
Q 016603 310 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS-----------G---KTKGEVAEEC--QNMNWGTFKPLLTDAL 367 (386)
Q Consensus 310 kA~Td~~~--~i~~~~~~~p----~v~nll~i~~~~~-----------~---~~~eel~~~~--~~l~~~dlK~~Lae~I 367 (386)
+|+||+.+ .++..++++| +.||+++|++.+. + +++++++++| +++||+|||++|+++|
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l 326 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEV 326 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999863 3566778887 7899999998762 2 6789999999 4689999999999999
Q ss_pred HHhhHHHHHHHHHHhhcc
Q 016603 368 IEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 368 ~~~L~pir~r~~~~~~~~ 385 (386)
+++|+|||++|++..+||
T Consensus 327 ~~~L~PIRe~~~~~~e~~ 344 (682)
T PTZ00348 327 NALLEPVRQHFASNPEAH 344 (682)
T ss_pred HHHHHHHHHHHHcChhHH
Confidence 999999999999998887
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-60 Score=475.07 Aligned_cols=277 Identities=20% Similarity=0.255 Sum_probs=238.8
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
.+++++|+|++|||. |||||+++++ +.+.||+ ++.++|+|+|+|+++. ..+.+++++++++++++|+|+|+||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 457899999999995 9999999975 5556897 5788999999999998 568999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhh------hccc-----ce
Q 016603 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF 219 (386)
Q Consensus 152 ~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil------~~~a-----di 219 (386)
+.||.|++|. .+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||+ +++. |+
T Consensus 150 t~I~s~~~~~--~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDYV--GGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHHH--hHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 9999766653 345554332 4668888888887766 45679999999999999998 4554 89
Q ss_pred eecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC
Q 016603 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 220 vpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D 299 (386)
||||.||+||++||||+|+|||+ .+|..+++ +++|+|+++.+|||||.| +|+|+|+|
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D 279 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVTD 279 (383)
T ss_pred eecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccC
Confidence 99999999999999999999984 24877765 789999766679999996 68999999
Q ss_pred CHHHHHHHhhh-cccCCCCCccc--CCCCCCCcchHHHHHHhcC--CCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhH
Q 016603 300 PKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLH 372 (386)
Q Consensus 300 spe~I~~KI~k-A~Td~~~~i~~--~~~~~p~v~nll~i~~~~~--~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~ 372 (386)
+|++|++||++ |+||+..+++. ..+++|+++++++|+++|. ++++||++++| |++++++||+.|++.|+++|+
T Consensus 280 ~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~ 359 (383)
T PLN02486 280 TPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVE 359 (383)
T ss_pred CHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999887664 4568899999999999985 46799999999 468999999999999999999
Q ss_pred HHHHHHHHHhh
Q 016603 373 PIQSWQMALQK 383 (386)
Q Consensus 373 pir~r~~~~~~ 383 (386)
|+|++++++.+
T Consensus 360 ~~qerr~~~~~ 370 (383)
T PLN02486 360 RHQRARAAVTD 370 (383)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.5e-60 Score=464.85 Aligned_cols=276 Identities=34% Similarity=0.517 Sum_probs=242.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHH--HHHcCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDN 149 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~~~--~lA~Gldp 149 (386)
.+++++|+||+|||.|||||+++ +.+|++||+ |++++|+|||+||++++. +++.+++++++++.. ++|+|+||
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 46889999999999999996655 689999995 899999999999999943 589999999999999 99999999
Q ss_pred CCcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCC-CCcccccchhhHHHhhhhhhcccceeecccchhH
Q 016603 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG-ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (386)
Q Consensus 150 ~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~-~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~ 228 (386)
+++.||+||+|.++.++.|.+.+..+..+|+|+.+++++.++.+. +++++|+|+||+||||||+++++|+||||.||++
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRG 161 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHH
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHH
Confidence 999999999999999999999999999999999999987666653 5889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHh
Q 016603 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (386)
Q Consensus 229 h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI 308 (386)
|++++||+|+|+|++. .|++|..+++ +++|+| +|.+|||||+| +++|+|+|++++|++||
T Consensus 162 ~~~l~rd~a~k~~~~~--------------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~--ns~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 162 HIELARDLARKFNYKE--------------IFPKPAGLTS---PLLPGL-DGQKKMSKSDP--NSAIFLDDSPEEIRKKI 221 (292)
T ss_dssp HHHHHHHHHHHHTHHS--------------TSSS-EEEEE---TCBBST-TSSSBTTTTTT--GGS-BTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhcccc--------------cccCchheee---cccccc-CCccccCccCC--ccEEEEeccchhHHHHH
Confidence 9999999999999761 2778999998 579998 78779999997 47999999999999999
Q ss_pred hhcccCCCCCcccCCCCCCCcch-HHHHHHhcCC----CCHHHHHHHH--ccCChhhHHHHHHHHHHHhhH
Q 016603 309 KRCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEEC--QNMNWGTFKPLLTDALIEHLH 372 (386)
Q Consensus 309 ~kA~Td~~~~i~~~~~~~p~v~n-ll~i~~~~~~----~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~ 372 (386)
++|+|++...+......++.+++ +++++..+.+ .+++++.++| +.+|++|+|++++++++++|+
T Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 222 KKAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 99999998755444556677777 7777777643 4579999999 458999999999999999885
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.7e-59 Score=449.76 Aligned_cols=249 Identities=22% Similarity=0.260 Sum_probs=221.3
Q ss_pred ceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 016603 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (386)
Q Consensus 79 ~~i~tGi~PTG-~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~~~~lA~G 146 (386)
.++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999 7999999985 59999999 8999999999999998 5 589999999999999999999
Q ss_pred CC--CCCcEEEEcccchhhhHHHHH----HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhccccee
Q 016603 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (386)
Q Consensus 147 ld--p~k~~i~~qS~~~~~~~l~w~----l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adiv 220 (386)
+| |+|++||+||+|+++ ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 96 999999999999988 6777 9999999999999999976532 257899999999999999999999999
Q ss_pred ecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe-eeccC
Q 016603 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (386)
Q Consensus 221 pvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~-I~L~D 299 (386)
|||.||++|++++||+|+|||+. .|..+.+ ++||+| +| .|||||.++ +. |+++|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------------------~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------------------KVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------------------CcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 99999999999999999999732 2555554 679999 67 599999863 34 69999
Q ss_pred CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHHHHHHHHHh
Q 016603 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 300 spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~Lae~I~~~ 370 (386)
+|++|++||++|+|| ++.+++.++.++++++++|++++|. +-.++++|++||++|++.
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 999999999999987 4578889998888999999999995 323999999999999863
No 18
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.5e-58 Score=444.26 Aligned_cols=248 Identities=25% Similarity=0.389 Sum_probs=220.5
Q ss_pred eEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 016603 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (386)
Q Consensus 80 ~i~tGi~PTG-~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~----------~~~~i~~~~~~~~~~~lA~Gl 147 (386)
.+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||++++. +++.+++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 789999999 899999999999999843 789999999999999999999
Q ss_pred C--CCCcEEEEcccch---hhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhccc----c
Q 016603 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (386)
Q Consensus 148 d--p~k~~i~~qS~~~---~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~a----d 218 (386)
| |+|+.||.||+|+ ++.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999998 8999999999999999999999999765 2 56899999999999999999988 9
Q ss_pred eeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc
Q 016603 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 219 ivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~ 298 (386)
+||||.||++|++++||+|+|+|. ++.|..++. ++|||| +| .|||||.++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 456888887 679999 67 49999986322224579
Q ss_pred CCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHH----HHccCChhhHHHHHHHHHHHh
Q 016603 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 299 Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~----~~~~l~~~dlK~~Lae~I~~~ 370 (386)
|+|++|++||++|+ .++++.|++.+++.+.+|+++ .+++.+++++|+.||+.|+++
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999998 246889999888887777777 556678899999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5e-52 Score=421.96 Aligned_cols=263 Identities=20% Similarity=0.227 Sum_probs=223.7
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (386)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +.+.+++++.++.. .++
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~-ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKE-QLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHH-HHH
Confidence 57899999999995 99999996 679999998 7999999999999997 42 55778888877644 459
Q ss_pred cCCCCCC--cEEEEcccchhhhHHHHHHh---cccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc----
Q 016603 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (386)
Q Consensus 145 ~Gldp~k--~~i~~qS~~~~~~~l~w~l~---~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~---- 215 (386)
+|+||++ +.||+||+|+++.++.|++. +.+++++|.+..+||.+.. . .+++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~-~-~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLR-E-GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhc-c-CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999877 7889998888888876542 1 2578999999999999999999
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
++|++|||.||++|++++||+|+|+|.+ .+..+.. +.|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999842 1223333 679998 78 7999997 6999
Q ss_pred eccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHH-ccCChhhHHHHHHHHHHHhh
Q 016603 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEEC-QNMNWGTFKPLLTDALIEHL 371 (386)
Q Consensus 296 ~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~-~~l~~~dlK~~Lae~I~~~L 371 (386)
+|+| +|+++++||+++. ++++.+++.+|..++.+++++++++| .+-+++++|+.||++|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v~~~l 308 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNIS-------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAEEITALV 308 (408)
T ss_pred eCCCCCCCHHHHHHHHhcCC-------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999 9999999999962 23567788888888888999999999 44599999999999999999
Q ss_pred HHHHHHHHHHh
Q 016603 372 HPIQSWQMALQ 382 (386)
Q Consensus 372 ~pir~r~~~~~ 382 (386)
+...+..+...
T Consensus 309 hg~~~~~~a~~ 319 (408)
T PRK05912 309 HGEEAAEAAEE 319 (408)
T ss_pred CCHHHHHHHHH
Confidence 98776555443
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-49 Score=403.05 Aligned_cols=265 Identities=17% Similarity=0.198 Sum_probs=215.8
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 016603 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~~~~l 143 (386)
.+++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ | .+.+++++++..+.+++.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 457899999999995 99999887 579999998 7999999999999997 4 256789999998888876
Q ss_pred HcCCCCCCcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhhc----ccc
Q 016603 144 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSD 218 (386)
Q Consensus 144 A~Gldp~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~~----~ad 218 (386)
+ |+||++++||+||+|.++.++.|++.+..+.-.++||++++++..+++ ++++++++|+||+|||||++++ ++|
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~ 188 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVD 188 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCC
Confidence 6 999999999999999987777777644333333445655555555553 3578999999999999999999 999
Q ss_pred eeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc
Q 016603 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 219 ivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~ 298 (386)
++|||.||++|++++||+++|+|.. .|..+.. +.|+++ ||+ |||||. +|+|+|+
T Consensus 189 iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~ 242 (410)
T PRK13354 189 LQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLD 242 (410)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCceecc
Confidence 9999999999999999999999853 2434444 568998 786 999997 5899999
Q ss_pred CC---HHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhc---CCCCHHHHHHHHcc-CChhhHHHHHHHHHHHhh
Q 016603 299 DP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI---SGKTKGEVAEECQN-MNWGTFKPLLTDALIEHL 371 (386)
Q Consensus 299 Ds---pe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~---~~~~~eel~~~~~~-l~~~dlK~~Lae~I~~~L 371 (386)
|+ |+++++||+++. | +.++.|+++| +.+++++++++|.. .+++++|+.||++|++++
T Consensus 243 d~~tsp~~i~qki~~~~-D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~v 306 (410)
T PRK13354 243 PEKTSPYEFYQFWMNID-D---------------RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAEEITKFV 306 (410)
T ss_pred CCCCCHHHHHHHHHcCC-h---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 99 999999999862 1 1245555555 46788999999964 469999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 016603 372 HPIQSWQMALQKL 384 (386)
Q Consensus 372 ~pir~r~~~~~~~ 384 (386)
+..++..+....+
T Consensus 307 hg~~~~~~a~~~~ 319 (410)
T PRK13354 307 HGEEAAEEAEKIF 319 (410)
T ss_pred CCHHHHHHHHHHH
Confidence 9988876655443
No 21
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-48 Score=367.37 Aligned_cols=267 Identities=24% Similarity=0.230 Sum_probs=214.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHH-H---cCCCC
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-A---CGIDN 149 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~l-A---~Gldp 149 (386)
+.+.+|||+.|||+||+|.+++ +.+..+|-+ |++|.|++|||||++++ ..++.+..++.|+-..+. + .+++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 5689999999999999999887 468888866 89999999999999984 355565556554433333 3 35667
Q ss_pred CCcEEEEcccch---hhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 016603 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (386)
Q Consensus 150 ~k~~i~~qS~~~---~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ 226 (386)
++..+...|++. +++-..++++..++-..+++... ++.++ .++..++.++||.|||+|++++++|++++|+||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 777777788873 45666677777776665655532 33333 267889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 227 ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
|+.+.+||++++.+|++ +|.++++ +++|||.+| +|||||+| +|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~yk------------------KrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGYK------------------KRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCcc------------------cceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 99999999999999843 4778887 789999665 89999997 699999999999999
Q ss_pred HhhhcccCCCCCcccCCCCCCCcchHHHHHHhc-----------------------CCCCHHHHHHHH--ccCChhhHHH
Q 016603 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEEC--QNMNWGTFKP 361 (386)
Q Consensus 307 KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~-----------------------~~~~~eel~~~~--~~l~~~dlK~ 361 (386)
||++|||.+.. .+.|+++.+.+++ +++++||++++| +.+||+|||.
T Consensus 244 KI~kAfCePg~---------ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~ 314 (360)
T KOG2144|consen 244 KIKKAFCEPGN---------VEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKK 314 (360)
T ss_pred HHHHhcCCCCC---------cCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHH
Confidence 99999998643 3445566665542 235789999999 4699999999
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 016603 362 LLTDALIEHLHPIQSWQMAL 381 (386)
Q Consensus 362 ~Lae~I~~~L~pir~r~~~~ 381 (386)
.|+.+||++|+|||+.++..
T Consensus 315 ~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 315 GLEKALNELLQPIREEFSNW 334 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988763
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.3e-44 Score=364.31 Aligned_cols=242 Identities=21% Similarity=0.237 Sum_probs=196.8
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 016603 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (386)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA~ 145 (386)
++++|+||+||| .+||||+++ +.+|++||+ ||+++++|||+||+++ |. +.+++++|+ ++++.++++
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 799999998 578999998 8999999999999998 53 345566666 567888999
Q ss_pred CCCCCCcEEEEcccchh---hhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeec
Q 016603 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (386)
Q Consensus 146 Gldp~k~~i~~qS~~~~---~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpv 222 (386)
|+||++++|++||+|.. +.++.|.+++.+++++|.+..+|+.+. . +++++++|+||+|||||++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999863 667778899999999999998887543 2 4589999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCC------CC--CCe
Q 016603 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (386)
Q Consensus 223 G~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p------~~--~s~ 294 (386)
|.||++|++.+|++|++++... .|..|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999998542 2556666655 43 45 47777642 12 378
Q ss_pred eeccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHH
Q 016603 295 INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 373 (386)
Q Consensus 295 I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~p 373 (386)
||+.|+||++.+||++++|+.. .++++++.+ ..+-++.+.|..+|..|++.++.
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~------------------------~~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLG------------------------LEEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCc------------------------HHHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 8888889999999999999842 123444433 34457888999999999888874
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-43 Score=330.47 Aligned_cols=277 Identities=20% Similarity=0.291 Sum_probs=238.6
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHH-HHHHHHhccC--cEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQNSY--ETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnyl~~i-~~~~~lQ~~~--~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++..|||..||.. |||||.++++ .+| ||+.+ ..+|.+.|.+.++. ....++..+.+++|+++++|+|+||.
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~ 160 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK 160 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence 458999999999965 9999999988 888 88855 56999999999998 45889999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhhc-----------ccc
Q 016603 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSD 218 (386)
Q Consensus 151 k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~~-----------~ad 218 (386)
|+.||.+.++..-.- .+ -++-++.++.++++....+| +++..+|.+.+|..|||..+.. -.|
T Consensus 161 kTfIFsn~~y~g~~~---fy---~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~C 234 (397)
T KOG2145|consen 161 KTFIFSNLDYMGGPA---FY---ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPC 234 (397)
T ss_pred ceEEEechhhccCcH---HH---HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCce
Confidence 999999888753111 11 23344557788887777777 5678999999999999999874 168
Q ss_pred eeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc
Q 016603 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 219 ivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~ 298 (386)
++|+.+||+|+++++||+|+|++ +++|..++. .++|.|++.+.|||.|+| +++|||+
T Consensus 235 LiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~Iflt 291 (397)
T KOG2145|consen 235 LIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIFLT 291 (397)
T ss_pred eceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEEec
Confidence 99999999999999999999987 456887776 789999877899999997 7999999
Q ss_pred CCHHHHHHHhhh-cccCCCCCcccC--CCCCCCcchHHHHHHhc--CCCCHHHHHHHH--ccCChhhHHHHHHHHHHHhh
Q 016603 299 DPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLI--SGKTKGEVAEEC--QNMNWGTFKPLLTDALIEHL 371 (386)
Q Consensus 299 Dspe~I~~KI~k-A~Td~~~~i~~~--~~~~p~v~nll~i~~~~--~~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L 371 (386)
|++++|++||.+ |+++++.+++.. ..++|+|+.-++|+++| ++..+|++..+| |+|..||+|+.+.+.|.+++
T Consensus 292 dt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V 371 (397)
T KOG2145|consen 292 DTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFV 371 (397)
T ss_pred CcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHH
Confidence 999999999987 999999998863 45789999999999987 445789999999 57999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 016603 372 HPIQSWQMALQK 383 (386)
Q Consensus 372 ~pir~r~~~~~~ 383 (386)
+.+|+++.++.+
T Consensus 372 ~~hQa~Rk~Vtd 383 (397)
T KOG2145|consen 372 SRHQAARKEVTD 383 (397)
T ss_pred HHHHHHHHhccH
Confidence 999999988765
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-41 Score=355.86 Aligned_cols=234 Identities=16% Similarity=0.208 Sum_probs=197.8
Q ss_pred HHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-hhHHHHH----Hhc
Q 016603 101 KNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL----LSS 172 (386)
Q Consensus 101 ~~~~~lQ~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~~~l~w~----l~~ 172 (386)
+.+++-..|++++|++|||||++++ ++.++|++.++++++.|+|+|+|++ ++|+++|+... +...||. ++.
T Consensus 399 ~~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~ 477 (682)
T PTZ00348 399 KDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIAR 477 (682)
T ss_pred HHHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHH
Confidence 3453323389999999999999983 7999999999999999999999999 99999999754 3557888 456
Q ss_pred ccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCcccccc
Q 016603 173 ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (386)
Q Consensus 173 ~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~ 252 (386)
.++++|++|+. |++..++|+++||+||++||+++++|++.+|+|||+.++||||++++.+
T Consensus 478 ~~tl~r~~r~~---------g~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~----------- 537 (682)
T PTZ00348 478 KNLLSHVEELY---------GGELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI----------- 537 (682)
T ss_pred hccHHHHHHHh---------cCCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-----------
Confidence 78888888865 2256699999999999999999999999999999999999999999632
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchH
Q 016603 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNL 332 (386)
Q Consensus 253 g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nl 332 (386)
.|.+++. .++|+|..|..+|++|+| +|+|+|+|++++|++||++|||.+. + +.|++
T Consensus 538 ---------~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp~--~--------~~Npv 593 (682)
T PTZ00348 538 ---------ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAPN--E--------EANPV 593 (682)
T ss_pred ---------cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCCC--C--------CCCcH
Confidence 1434444 679999888889999865 7999999999999999999999862 1 23567
Q ss_pred HHHHHhc-------------------CCCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhHHHHHHHH
Q 016603 333 LSIYQLI-------------------SGKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLHPIQSWQM 379 (386)
Q Consensus 333 l~i~~~~-------------------~~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~pir~r~~ 379 (386)
++|.+++ ++.++||++++| |.+||.|||++++++|+++|+|+|++++
T Consensus 594 l~~~~y~~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 594 ISVAQHLLAQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred HHHHHHHhcCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777653 245799999999 4799999999999999999999999985
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-37 Score=310.31 Aligned_cols=262 Identities=20% Similarity=0.228 Sum_probs=197.2
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C-CCHHHHHHHHH----HHHH-HHHHcCCC
Q 016603 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAA-IYLACGID 148 (386)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~-~~~~~i~~~~~----~~~~-~~lA~Gld 148 (386)
++++|+||+||| .+||||+++ +.++.+||+ ||+++++|||+||+++ | ++.+..+..++ .+++ ...++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 569999998 8999999999999998 5 45555555553 3333 33456777
Q ss_pred CC-CcEEEEcccchhh---hHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeeccc
Q 016603 149 NS-KASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (386)
Q Consensus 149 p~-k~~i~~qS~~~~~---~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~ 224 (386)
++ +++++++|+|... .+....++..++++++.+..+++.+.. .+.++++.+|+||+|||+|+++++.|++.||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~--~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLE--REQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhc--cCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 9999999999643 344344668999999888887764332 22479999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeec-cCC--H
Q 016603 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL-LDP--K 301 (386)
Q Consensus 225 DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L-~Ds--p 301 (386)
|||.++.++||+++|+++ +++.+++. |.|.++ ||. |||||. ++++++ .|. |
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~---~~a~~~~s~~~Sp 242 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSE---GGAVWLDSEKTSP 242 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccC---CCceEccCCCCCc
Confidence 999999999999999773 24667777 559999 886 999997 454444 333 6
Q ss_pred HHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCC---CCHHHHHHHH-ccCChhhHHHHHHHHHHHhhHHHHHH
Q 016603 302 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---KTKGEVAEEC-QNMNWGTFKPLLTDALIEHLHPIQSW 377 (386)
Q Consensus 302 e~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~---~~~eel~~~~-~~l~~~dlK~~Lae~I~~~L~pir~r 377 (386)
.+++++.++.... .+..|+..++. ++++++.+.. ..-++.+.|+.||..++..++.-...
T Consensus 243 ~~~yq~~~~i~D~----------------~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a 306 (401)
T COG0162 243 YDFYQYWMNIEDA----------------DVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAA 306 (401)
T ss_pred HhhhhcHhcCcHH----------------HHHHHHHHhCcCChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHH
Confidence 6777776665411 12333333333 4566666644 12378899999999999999887666
Q ss_pred HHHHhhc
Q 016603 378 QMALQKL 384 (386)
Q Consensus 378 ~~~~~~~ 384 (386)
++.++++
T Consensus 307 ~~a~~~~ 313 (401)
T COG0162 307 EAAEEEF 313 (401)
T ss_pred HHHHHHH
Confidence 6665554
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7e-21 Score=187.83 Aligned_cols=255 Identities=18% Similarity=0.229 Sum_probs=181.8
Q ss_pred CceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH-
Q 016603 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA- 144 (386)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA- 144 (386)
+.+||.|++||.. +|+||.++. ..++.+|. ||+++-+|++.+|.++ |. +.+.+++|++.+...+..
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~l-m~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLAL-MVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHH-HHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999987 999999974 58888886 8999999999999997 42 224455555444333332
Q ss_pred ---------cCCCCCCcEEEEcccchhhhHHHHHHh---cccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhh
Q 016603 145 ---------CGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASD 211 (386)
Q Consensus 145 ---------~Gldp~k~~i~~qS~~~~~~~l~w~l~---~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAAD 211 (386)
+|....+-.|+.+++|.+...+-=.|. .++.++.|.+.-+. +.+.. ++..++.+|+|-+|||+|
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV---~~RLes~~GlSftEFtYQ~lQAYD 218 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSV---KSRLESPNGLSFTEFTYQLLQAYD 218 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHH---HHhhcCCCCCcHHHHHHHHHHHHh
Confidence 344446678999999976443332333 35556654444333 33333 467899999999999999
Q ss_pred hhhc----ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccC
Q 016603 212 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 287 (386)
Q Consensus 212 il~~----~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS 287 (386)
.+++ +..++.+|.||+.|++.+-|+.+|+-..- ..+|....++++ +- +| .|..||
T Consensus 219 fy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~------------~~vfGlT~PLlT-------ss-tG-~KlGKS 277 (467)
T KOG2623|consen 219 FYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQ------------AFVFGLTFPLLT-------SS-TG-AKLGKS 277 (467)
T ss_pred HHHHHHhcCeeEEecccccccccchHHHHHHHhcccc------------cceeeeeeeeEe-------cC-cc-hhhccC
Confidence 9984 79999999999999999999999976420 012333333443 32 56 699999
Q ss_pred CCCCCCeeeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHH-ccCChhhHHHHH
Q 016603 288 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEEC-QNMNWGTFKPLL 363 (386)
Q Consensus 288 ~p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~-~~l~~~dlK~~L 363 (386)
. +|+|+|+- ||.++++-.-++..| ++.-++.++.++.-+++++|.++. ++-...-..+.|
T Consensus 278 a---GnAvWLdp~~tspy~lYQfF~~~pDd-------------~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~L 341 (467)
T KOG2623|consen 278 A---GNAVWLDPSKTSPYHLYQFFASLPDD-------------DVEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKLL 341 (467)
T ss_pred C---CceEEecCccCCcHHHHHHHHhCchh-------------HHHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHHH
Confidence 7 78999975 789999998887744 233456666666656666666666 445566678889
Q ss_pred HHHHHHhhHH
Q 016603 364 TDALIEHLHP 373 (386)
Q Consensus 364 ae~I~~~L~p 373 (386)
|+.|.++++.
T Consensus 342 A~eVTr~VHG 351 (467)
T KOG2623|consen 342 AAEVTRMVHG 351 (467)
T ss_pred HHHHHHHHcc
Confidence 9999988875
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.65 E-value=7.6e-16 Score=146.70 Aligned_cols=169 Identities=19% Similarity=0.176 Sum_probs=123.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE-------EEEc
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~q 157 (386)
.|||.+||||+.+++.+|...+. +..+++.|.|. ++ .....+....+.+++.++||++++.. +|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDT----DQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcC----CC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 57899999999999999998876 56667779993 32 23455667788888999999999742 8999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia 237 (386)
|+..+.-. -. +.+|. ..| -|..+|++-++.|....++++|+.|.|+..+...-+.++
T Consensus 83 S~r~~~y~---~~-----~~~L~----------~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEIYR---KY-----AEKLL----------EKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHHHH---HH-----HHHHH----------HcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 98543211 01 01111 112 278999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc------CCHHHHHHHhhh
Q 016603 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 310 (386)
Q Consensus 238 ~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~------Dspe~I~~KI~k 310 (386)
+.|| ++.|...+. +.+++. +| .||||+.. ...|. -+|+.|.+-+..
T Consensus 140 ~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~----~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 140 EALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKG----DTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHcC------------------CCCCceEee---ccccCC-CC-CcccCCCC----CccHHHHHHCCCCHHHHHHHHHH
Confidence 9987 334655444 456676 56 69999973 23332 257777776664
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.45 E-value=5.2e-13 Score=117.04 Aligned_cols=63 Identities=43% Similarity=0.469 Sum_probs=53.8
Q ss_pred hhHHHhhhhhhccc---ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 016603 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (386)
Q Consensus 204 YP~LQAADil~~~a---divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG 280 (386)
||+.|+||++.+.. |++++|.||.+|++..++++++++. ...|..+.. ++|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEe---CCeECC-CC
Confidence 99999999999999 9999999999999999999999872 124777776 568776 55
Q ss_pred CcccccCC
Q 016603 281 LSKMSKSA 288 (386)
Q Consensus 281 ~~KMSKS~ 288 (386)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.20 E-value=8.3e-11 Score=111.59 Aligned_cols=169 Identities=20% Similarity=0.211 Sum_probs=119.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhh
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~ 164 (386)
.|||.|||||...++.+|...+. ++++++-|-|.-. .....+....+.+++.++||++++- +|+||+..+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHHH
Confidence 57899999999999999987654 7888999988722 2344566778889999999999963 89999875421
Q ss_pred HHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHHHHhhhh
Q 016603 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (386)
Q Consensus 165 ~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~k~n~~y 244 (386)
+. . +++. ...| |..+|=+--+.|=...+.++|.-|.|+..+-..-+.+++.+|
T Consensus 82 ~~---~--------~~~L-------~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 82 RA---Y--------AEEL-------IKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred HH---H--------HHHH-------HHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 10 0 1111 1111 556666666667777899999999999999999999999987
Q ss_pred CCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc----CCHHHHHHHhhh
Q 016603 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 310 (386)
Q Consensus 245 g~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~----Dspe~I~~KI~k 310 (386)
++.|...+. ++|.+. +| +||||+... .+|.-. -.|+.|.+-+..
T Consensus 135 ---------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 135 ---------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred ---------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHHH
Confidence 445777776 557775 56 699999742 222111 246666666653
No 30
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.92 E-value=2.2e-08 Score=104.72 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=125.0
Q ss_pred eEEEeeCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 80 ~i~tGi~PT--G~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
.|.+.|.|| |.+||||...++.+|...+. |+++++-|-|. |. ....+..+.+..++.++||++|.- .|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe~-py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNGE-VI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCCC-ce
Confidence 356777666 99999999999999986654 78888999887 33 233456677888999999999853 89
Q ss_pred Ecccchh-hhHHHHH-------HhcccCHHHhhhhhc----------hHHHHHhh-------C---------CCC--c--
Q 016603 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMIQ----------FKEKSHKA-------G---------GEN--V-- 197 (386)
Q Consensus 156 ~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~~~----------~k~~~~~~-------~---------~~~--~-- 197 (386)
+||+..+ |.+.+-. +.|+++-.+|+..-. |....+.. + ++. +
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~ 155 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI 155 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence 9999643 2221111 558888877754321 10000000 0 000 0
Q ss_pred ---ccccchh----------------hHHHhhhh---hhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCC
Q 016603 198 ---GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (386)
Q Consensus 198 ---~~g~l~Y----------------P~LQAADi---l~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~ 255 (386)
--|.+.+ |..+-|.+ ...+.|+|..|.||..|.-.-..+.+.++
T Consensus 156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------------- 221 (513)
T PRK14895 156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------------- 221 (513)
T ss_pred EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence 0011111 22222211 22378999999999999988888888876
Q ss_pred CCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhh
Q 016603 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (386)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (386)
+..|...+. +.|.++ +| +||||.. +...+.+ .|+.|.+-+..
T Consensus 222 ----~~~p~~~H~---plv~~~-~g-~KLSKR~----g~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ----YAVPSMTHI---PLIHGA-DG-AKLSKRH----GALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ----CCCCeEEEE---EeEEcC-CC-Ccccccc----CchhHHHHHHCCCCHHHHHHHHHH
Confidence 335777776 457777 66 6999996 3444433 57777777764
No 31
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.91 E-value=5.5e-08 Score=101.60 Aligned_cols=191 Identities=20% Similarity=0.206 Sum_probs=125.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc------EEEEc
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ 157 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~------~i~~q 157 (386)
.|||.+||||...++.+|..... |+++++-|-|. |. ....+..+.+..++..+||++|.. -.|+|
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q 84 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ 84 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence 56799999999999999986644 78888898887 33 334556778888999999999964 14999
Q ss_pred ccchh-hhHHHHH-------HhcccCHHHhhhhhc----------h---------HHHHHh--hCC---------C----
Q 016603 158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ----------F---------KEKSHK--AGG---------E---- 195 (386)
Q Consensus 158 S~~~~-~~~l~w~-------l~~~~~v~~L~r~~~----------~---------k~~~~~--~~~---------~---- 195 (386)
|+..+ |.+..-. +.|+++-.+|...-. | .+..+. .|. +
T Consensus 85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~ 164 (476)
T PRK01406 85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV 164 (476)
T ss_pred hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence 99643 2222111 568888877753311 0 000000 000 0
Q ss_pred -------------Ccccccch------hhHHHhhhhhh---cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccC
Q 016603 196 -------------NVGVALLT------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (386)
Q Consensus 196 -------------~~~~g~l~------YP~LQAADil~---~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g 253 (386)
+..++-++ +|..+.||++- .+.|+|..|.||..|.-.-..+.+.++
T Consensus 165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------ 232 (476)
T PRK01406 165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------ 232 (476)
T ss_pred EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------
Confidence 00111111 67777777743 578999999999999988888888876
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhh
Q 016603 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (386)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (386)
+..|...+. +.+.++ +| +||||.+ +.+.+.| .|+.+.+-+.+
T Consensus 233 ------~~~p~~~H~---pli~~~-~g-~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 233 ------WEVPVFAHL---PLILGP-DG-KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred ------CCCCeEEEe---eeeeCC-CC-CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 234766665 346676 66 6999996 3566654 56666666544
No 32
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.89 E-value=1.1e-07 Score=99.23 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=120.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHh-ccCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ-~~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~- 162 (386)
.|||.|||||...++.+|.... .|+++++-|-|. |+ ....+..+.+..++..+||++|. ..|+||+..+
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~ 80 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT-------DLERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDI 80 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHH
Confidence 5789999999999999998664 478888999887 33 33445677888999999999995 3899999643
Q ss_pred hhHHHHH-------HhcccCHHHhhhhh-------------------chHHHHHhh--CC---------C-C-c-----c
Q 016603 163 HVELMWL-------LSSATPIGWLNKMI-------------------QFKEKSHKA--GG---------E-N-V-----G 198 (386)
Q Consensus 163 ~~~l~w~-------l~~~~~v~~L~r~~-------------------~~k~~~~~~--~~---------~-~-~-----~ 198 (386)
|.+..-. +.|+++-.+++.+- +-.+..+.. |. . . + -
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~ 160 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQV 160 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecc
Confidence 2222111 45788877765331 111100000 00 0 0 0 0
Q ss_pred cccch----------------hhHHHh---hhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 016603 199 VALLT----------------YPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (386)
Q Consensus 199 ~g~l~----------------YP~LQA---ADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~ 259 (386)
.|.+. +|..+- .|=...+.|+|..|.||..|...-..+.+.++
T Consensus 161 ~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------ 222 (470)
T TIGR00464 161 RGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------ 222 (470)
T ss_pred cceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------
Confidence 01111 222221 11122379999999999999998888888876
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhh
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (386)
+..|...+. +.+.++ +| +||||.. +.+.|.| .|+.+.+-+.+
T Consensus 223 ~~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 223 WKIPVFAHL---PMILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCCeEEEE---eeeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 234666665 346666 66 6999996 3566543 57767666654
No 33
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.81 E-value=1.4e-08 Score=99.89 Aligned_cols=173 Identities=19% Similarity=0.240 Sum_probs=110.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~- 163 (386)
.|||.|||||+..++.+|...+. ++++++-|-|.-. .....+....+.+++.++||++|+. +|+||+..+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDP------PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 57799999999999999987755 7889999999611 2345566788999999999999964 7889997532
Q ss_pred h-------HHHHHHhcccCHHHhhhhhc--------hHHHHHhhC-CCC---------------------------c--c
Q 016603 164 V-------ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAG-GEN---------------------------V--G 198 (386)
Q Consensus 164 ~-------~l~w~l~~~~~v~~L~r~~~--------~k~~~~~~~-~~~---------------------------~--~ 198 (386)
. +.-+.+.|.++-.++++..+ |.-.-+... ++. . .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 1 11233678999888764421 000000000 000 0 0
Q ss_pred c---------ccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCC
Q 016603 199 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (386)
Q Consensus 199 ~---------g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~ 269 (386)
+ |..+|=+-=+.|=...+.++|.=|.|....-..=..|.+.|+ ++.|+..+.
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~- 226 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL- 226 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe-
Confidence 1 112222222222233478899999998776666666666665 456877776
Q ss_pred CCcccccCCCCCcccccCC
Q 016603 270 AGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 270 ~~~~lpgL~dG~~KMSKS~ 288 (386)
+.|.+. +| +||||++
T Consensus 227 --pll~~~-~g-~kLSKr~ 241 (299)
T PRK05710 227 --PLVLNA-DG-QKLSKQN 241 (299)
T ss_pred --ecccCC-CC-CcccccC
Confidence 457776 67 6999996
No 34
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.76 E-value=2.2e-07 Score=93.60 Aligned_cols=193 Identities=25% Similarity=0.270 Sum_probs=108.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEecccee---------------cC-C---------CC
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAI---------------TL-P---------YD 127 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~-~i~IaDlhA~---------------t~-~---------~~ 127 (386)
+..|-||+-|||.+||||....+ .-+.+.++ |+++ +++..|.|-- ++ | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 56778999999999999987654 22334433 7887 4688999921 11 1 02
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhhHHH---H-HHhcccCHHH-hhhhhc---------hHHHHHhhC
Q 016603 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM---W-LLSSATPIGW-LNKMIQ---------FKEKSHKAG 193 (386)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~~l~---w-~l~~~~~v~~-L~r~~~---------~k~~~~~~~ 193 (386)
++-..++.....+.+..+||+.+ +|.+++...+..+. . .|...--+.+ |+.... |.-...+.|
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 24455566677788888999875 77777754332111 1 1111111111 000000 000000000
Q ss_pred C------------------------CCcc----cccchhhHHHhhhhhhcccceeecccchhHH---HHHHHHHHH-HHh
Q 016603 194 G------------------------ENVG----VALLTYPVLMASDILLYQSDFVPVGEDQKQH---LELTRELAE-RVN 241 (386)
Q Consensus 194 ~------------------------~~~~----~g~l~YP~LQAADil~~~adivpvG~DQ~~h---~elaRdia~-k~n 241 (386)
. ..++ -|+|.+=+==++.-..+++|+.|+|.||..+ +...+.+++ .|+
T Consensus 177 ~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg 256 (353)
T cd00674 177 KDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFG 256 (353)
T ss_pred cceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhC
Confidence 0 0000 0122222222333344679999999999999 999999999 765
Q ss_pred hhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC
Q 016603 242 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 242 ~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D 299 (386)
. +.|..+.. .++ .+ +|..|||||. +|.|.+.|
T Consensus 257 ~------------------~~P~~~~y---e~V-~l-~gg~KMSKSk---GnvI~~~d 288 (353)
T cd00674 257 G------------------EPPVPVMY---EFI-GL-KGGGKMSSSK---GNVITPSD 288 (353)
T ss_pred C------------------CCCeEEEe---eeE-Ee-CCCCccCCCC---CCcCCHHH
Confidence 2 23555443 233 34 3436999997 78898866
No 35
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.70 E-value=3.1e-07 Score=94.68 Aligned_cols=88 Identities=26% Similarity=0.310 Sum_probs=65.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~- 162 (386)
.|||.+||||...++.+|...+. |+++++-|-|. |. ....+....+..++..+||++|. .|+||+..+
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~ 77 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWDK--LVYQSENLKF 77 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHH
Confidence 48999999999999999987654 78899999887 33 23445667888899999999994 799999643
Q ss_pred hhHHHHH-------HhcccCHHHhhhh
Q 016603 163 HVELMWL-------LSSATPIGWLNKM 182 (386)
Q Consensus 163 ~~~l~w~-------l~~~~~v~~L~r~ 182 (386)
|.+..-. +.|+++-.+++.+
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 2221111 5688888877543
No 36
>PLN02627 glutamyl-tRNA synthetase
Probab=98.69 E-value=1.7e-06 Score=90.99 Aligned_cols=199 Identities=17% Similarity=0.136 Sum_probs=121.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE---
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS--- 153 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~--- 153 (386)
.++=..=.|||.+||||...++.+|...+. |+++++-|-|. |. ....+..+.+.+++..+||++|...
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~g 118 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVG 118 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccC
Confidence 344444467799999999999999987654 78889999887 32 3344567788889999999999642
Q ss_pred ----EEEcccchh-hhHHH-------HHHhcccCHHHhhhhhch-------------------HHHHHhh--CC------
Q 016603 154 ----VFVQSHVRA-HVELM-------WLLSSATPIGWLNKMIQF-------------------KEKSHKA--GG------ 194 (386)
Q Consensus 154 ----i~~qS~~~~-~~~l~-------w~l~~~~~v~~L~r~~~~-------------------k~~~~~~--~~------ 194 (386)
.|+||+..+ |.+.. ..+.|+++-.+++.+-.- .+..+.. +.
T Consensus 119 g~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~ 198 (535)
T PLN02627 119 GEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRF 198 (535)
T ss_pred CCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEE
Confidence 599999643 22211 115688887776533210 0000000 00
Q ss_pred -----CCc-----ccccch----------------hhHHHhhhh---hhcccceeecccchhHHHHHHHHHHHHHhhhhC
Q 016603 195 -----ENV-----GVALLT----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (386)
Q Consensus 195 -----~~~-----~~g~l~----------------YP~LQAADi---l~~~adivpvG~DQ~~h~elaRdia~k~n~~yg 245 (386)
..+ --|.+. ||..+=|-+ ...+.++|.=|.|...+--.=.-|.+.|+
T Consensus 199 k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg---- 274 (535)
T PLN02627 199 RVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG---- 274 (535)
T ss_pred EcCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC----
Confidence 000 012222 222222211 22368899999998766555555555554
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 246 ~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
++.|...+. +.|.+- +| +||||.+ +.+.+.+ .|+.|.+-+...
T Consensus 275 --------------~~~P~f~Hl---pli~~~-~g-~KLSKR~----~~~~v~~~r~~G~~PeAi~nyla~L 323 (535)
T PLN02627 275 --------------FPMPRFAHV---SLILAP-DR-SKLSKRH----GATSVGQFREMGYLPDAMVNYLALL 323 (535)
T ss_pred --------------CCCCeEEEc---cceeCC-CC-Ccccccc----CCccHHHHHHCCCCHHHHHHHHHHh
Confidence 456877776 457675 66 6999997 3444442 677888777543
No 37
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.67 E-value=1.5e-07 Score=99.24 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=50.4
Q ss_pred hhcccceeecccchhH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCC
Q 016603 213 LLYQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (386)
Q Consensus 213 l~~~adivpvG~DQ~~-h~elaRdia~-k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~ 290 (386)
..+++|++|.|.||.. +..+++++++ .++ .+.|..+.. ..+..- +| +|||||.
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y---~~v~~~-~G-~KMSKSk-- 285 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVY---ELFLDK-KG-EKISKSK-- 285 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeee---eeEEeC-CC-CcccccC--
Confidence 3457999999999999 9999999999 665 234666554 345432 45 7999997
Q ss_pred CCCeeeccC-----CHHHHH
Q 016603 291 DQSRINLLD-----PKDVIA 305 (386)
Q Consensus 291 ~~s~I~L~D-----spe~I~ 305 (386)
+|.|.+.| +|+.++
T Consensus 286 -GN~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 286 -GNVITIEDWLEYAPPESLR 304 (510)
T ss_pred -CCccCHHHHHHHCCHHHHH
Confidence 78998876 666665
No 38
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.4e-07 Score=98.07 Aligned_cols=178 Identities=20% Similarity=0.193 Sum_probs=113.4
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 81 i~tGi~--PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
|.+=|. |||.+||||...++.+|...+. ++++++-|-|. |+ ....+....+..++..+||+++.. +|+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WLGl~wde~-~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT-------DPERETPEAEDAILEDLEWLGLDWDEG-PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCCCCHHHHHHHHHHHHhcCCCCCCc-eee
Confidence 555554 5699999999999999987655 78899999997 33 334556677888899999999975 899
Q ss_pred cccchh-hhH-HHHH------HhcccCHHHhhhhh-----------chH---------HHHHhhCC----------C--C
Q 016603 157 QSHVRA-HVE-LMWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E--N 196 (386)
Q Consensus 157 qS~~~~-~~~-l~w~------l~~~~~v~~L~r~~-----------~~k---------~~~~~~~~----------~--~ 196 (386)
||+..+ +.+ ..++ +.|+++-.+|+.+- .+. ++....+. + .
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 999754 222 2222 45788886555431 111 11111000 0 0
Q ss_pred c-------ccccchhh------HHHhhhhhh------------cccceeecccchhHHHHHHHHHHHHHhhhhCCccccc
Q 016603 197 V-------GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (386)
Q Consensus 197 ~-------~~g~l~YP------~LQAADil~------------~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~ 251 (386)
. -.|.+..+ ++.-+|.+. .+.++|.-|.|...+=..=+-|.+.|+
T Consensus 162 ~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg---------- 231 (472)
T COG0008 162 PGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG---------- 231 (472)
T ss_pred CCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC----------
Confidence 0 11223332 233333332 368999999998877666666666655
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCcccccCCC
Q 016603 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (386)
Q Consensus 252 ~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p 289 (386)
++.|...+. ++|.+ -+| +||||++.
T Consensus 232 --------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 --------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred --------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 556877776 56766 455 69999973
No 39
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.56 E-value=8.8e-07 Score=86.28 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=109.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-h
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 163 (386)
.|||.|||||...++.+|...+. |+.+++-|-|.-. .....+..+.+.+++..+||++++. .++||+..+ |
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~------~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP------PREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 47899999999999999986644 7888999988722 1234456678888999999999974 789999754 2
Q ss_pred hHHHHH-------HhcccCHHHhhhhh-----chHHHHHh-----hCC---------C-Cc-----ccccc---------
Q 016603 164 VELMWL-------LSSATPIGWLNKMI-----QFKEKSHK-----AGG---------E-NV-----GVALL--------- 202 (386)
Q Consensus 164 ~~l~w~-------l~~~~~v~~L~r~~-----~~k~~~~~-----~~~---------~-~~-----~~g~l--------- 202 (386)
.+..-. +.|.++-.+++... .|.-.-+. .+. + .+ -.|.+
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 221111 55888888776441 11100000 000 0 00 00111
Q ss_pred ---h-----hhHHHhhhh---hhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCC
Q 016603 203 ---T-----YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (386)
Q Consensus 203 ---~-----YP~LQAADi---l~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~ 271 (386)
+ ||..+=|.. ...+.++|.=|.|...+--.=.-|.+.|+ ++.|...+.
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~--- 219 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL--- 219 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec---
Confidence 1 233332222 22478999999998776666666666665 456876666
Q ss_pred cccccCCCCCcccccCCC
Q 016603 272 ARVMSLTDGLSKMSKSAP 289 (386)
Q Consensus 272 ~~lpgL~dG~~KMSKS~p 289 (386)
+.|.+. +| +|+||++.
T Consensus 220 pll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 220 PLVVNA-DG-EKLSKQNG 235 (272)
T ss_pred hhhhCC-CC-CeeeccCC
Confidence 457776 67 69999973
No 40
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.50 E-value=2.8e-06 Score=87.99 Aligned_cols=190 Identities=22% Similarity=0.201 Sum_probs=116.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~ 163 (386)
.|||.+||||...++.+|+.... |+++++-|-|. |. ....+....+.+++..+|+++|. .|+||+..+.
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~ 80 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDR 80 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHH
Confidence 57899999999999999987644 78889999887 33 23455667788889999999994 7999986432
Q ss_pred -hHHH-------HHHhcccCHHHhhhhhc----------hH---------HHHHhh--C----------CCC-----ccc
Q 016603 164 -VELM-------WLLSSATPIGWLNKMIQ----------FK---------EKSHKA--G----------GEN-----VGV 199 (386)
Q Consensus 164 -~~l~-------w~l~~~~~v~~L~r~~~----------~k---------~~~~~~--~----------~~~-----~~~ 199 (386)
.+.. ..+.|+++-.+|+.+-. |. +..+.. | +.. .--
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~ 160 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIR 160 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEee
Confidence 1111 11558888777753311 00 000000 0 000 001
Q ss_pred ccchhhHHHhhhhhh-------------------cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 016603 200 ALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (386)
Q Consensus 200 g~l~YP~LQAADil~-------------------~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~ 260 (386)
|.+.++.-..-|.+. .+.++|.-|+|...+--.=.-|.+.|+ +
T Consensus 161 G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~ 222 (445)
T PRK12558 161 GEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------A 222 (445)
T ss_pred eEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------C
Confidence 333222211223322 358899999998776555555555554 4
Q ss_pred cCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 261 ~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
+.|+..+. +.|.+- || +|+||.+. ...+.+ .|+.|.+-+...
T Consensus 223 ~~P~f~H~---pli~~~-~g-~KLSKR~g----~~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 223 KPPVFAHL---SLLTGA-DG-KGLSKRLG----GLSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred CCCeEEEc---ccccCC-Cc-ccccccCC----CcCHHHHHHCCCCHHHHHHHHHHH
Confidence 56887776 457664 66 79999973 334432 688888877653
No 41
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.46 E-value=8.1e-07 Score=93.31 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=110.9
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 81 i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
|.+=| .|||.|||||...++.+|...+. ++.+++-|-|. |+ ....+..+.+.+++..+||++++ +++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~~~I~~dL~WLGl~wD~--~~~ 82 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT-------NPSKEKAEFEESIIEDLGKIEIKPDS--VSF 82 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCccchHHHHHHHHHHHHhCCCCCC--Ccc
Confidence 44555 56799999999999999976654 77888888887 33 44556778889999999999994 789
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhhhh-----------hchHHHHHh--------hCC-------------CC
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM-----------IQFKEKSHK--------AGG-------------EN 196 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~r~-----------~~~k~~~~~--------~~~-------------~~ 196 (386)
||+..+ +.+.+-. +.|.++-.+++.. .+..+..+. +.+ .+
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 999754 2222222 5688887776422 111111000 000 01
Q ss_pred cccccc------------------hhhHHHhhhhhh---cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCC
Q 016603 197 VGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (386)
Q Consensus 197 ~~~g~l------------------~YP~LQAADil~---~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~ 255 (386)
.+++-+ .||..+=|-.+- .+.++|..|.|...+-..=.-+.+.++
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg-------------- 228 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG-------------- 228 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC--------------
Confidence 111111 255555443332 478999999998888777777777765
Q ss_pred CCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
++.|.. +.+ ...++ +| .||||++
T Consensus 229 ----~~~P~~-~~f---~rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 ----LRRPRI-HAF---ARMNF-MN-TVLSKRK 251 (523)
T ss_pred ----CCCCee-eee---EEECC-CC-CcccccC
Confidence 345764 322 24465 56 5999995
No 42
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.46 E-value=7.4e-07 Score=85.10 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=97.8
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~- 162 (386)
.|||.|||||...++.+|..... +++.++-|-|. |+ ....+....+.+++..+||++| .+++||+..+
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 57899999999999999976643 78888899887 44 3445567788899999999999 5899999654
Q ss_pred hhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhh---hhhhcccceeecccchhHHHHHHHHHHHH
Q 016603 163 HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAER 239 (386)
Q Consensus 163 ~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAA---Dil~~~adivpvG~DQ~~h~elaRdia~k 239 (386)
+.+..-.|. ++-..|.. ...+ + ...+||..+=| |=...+.++|.-|.|....-..=.-+.+.
T Consensus 80 Y~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 144 (238)
T cd00807 80 LYEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA 144 (238)
T ss_pred HHHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence 222111111 00001110 0001 1 12235555543 44456899999999987766655566666
Q ss_pred HhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 240 ~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
++ ++.|..+.. ..+ +. +| .|+||+.
T Consensus 145 Lg------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~ 169 (238)
T cd00807 145 LR------------------LYRPHQWEF---SRL-NL-TY-TVMSKRK 169 (238)
T ss_pred cC------------------CCCCceeEE---EEE-CC-CC-CCccCcC
Confidence 55 344643222 223 44 66 6999997
No 43
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.38 E-value=1.6e-06 Score=83.00 Aligned_cols=158 Identities=22% Similarity=0.199 Sum_probs=101.8
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH---HHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ---QLSKATRETAAIYLACGIDNSKASVFVQS 158 (386)
Q Consensus 83 tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~---~i~~~~~~~~~~~lA~Gldp~k~~i~~qS 158 (386)
.|-.|||.+||||...++.+|+..+. +..+++-|-|. |.+ ...+....+.+++.++|++|+ .+++||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence 45678899999999999989876543 66788888887 333 344556678899999999999 579999
Q ss_pred cchh-hhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhh---hhhhcccceeecccchhHHHHHHH
Q 016603 159 HVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTR 234 (386)
Q Consensus 159 ~~~~-~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAA---Dil~~~adivpvG~DQ~~h~elaR 234 (386)
+..+ +.+..-.|. ++-..|. ....+ + . ..+||..+=| |=...+.++|.-|.|-..+-..=.
T Consensus 77 ~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~-~---~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~ 141 (240)
T cd09287 77 DRIELYYEYARKLI--------EMGGAYV--HPRTG-S-K---YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQR 141 (240)
T ss_pred ccHHHHHHHHHHHH--------HcCCccc--CcccC-C-c---EEEEEccccceeeeccccCCCeEEechhhhhCCHHHH
Confidence 8643 322211111 0111111 01111 1 1 1235555544 334468999999999888777666
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 235 dia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
-+.+.++ ++.|...+. ++|. . +| .||||.+
T Consensus 142 ~l~~~Lg------------------~~~P~~~H~---pll~-~-~~-~kLSKR~ 171 (240)
T cd09287 142 YIYEYFG------------------WEYPETIHW---GRLK-I-EG-GKLSTSK 171 (240)
T ss_pred HHHHHcC------------------CCCCcEEee---eeec-C-CC-Ceecccc
Confidence 6767665 345776665 3453 2 45 7999996
No 44
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.35 E-value=5.2e-06 Score=82.50 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=102.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~ 163 (386)
.|||.|||||...++.+|..... ++.+++-|-|. |+ ....+..+.+..++..+||+++ -.+|+||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~ 80 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT-------DPERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEI 80 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS-------STTTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc-------ccccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHH
Confidence 57899999999999999986644 77888899887 33 3345667788899999999998 358899997542
Q ss_pred -hHHH-------HHHhcccCHHHhhhhhch------------HHH--------HH---hhC---------CCC-------
Q 016603 164 -VELM-------WLLSSATPIGWLNKMIQF------------KEK--------SH---KAG---------GEN------- 196 (386)
Q Consensus 164 -~~l~-------w~l~~~~~v~~L~r~~~~------------k~~--------~~---~~~---------~~~------- 196 (386)
.+.. ..+.|.++-.+++....- ... .. ..+ +..
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 1111 114577777665533211 100 00 000 000
Q ss_pred ccc-------------------ccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 016603 197 VGV-------------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (386)
Q Consensus 197 ~~~-------------------g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~ 257 (386)
.-. |..+|-+=-+.|=...+.++|.=|.|-...-..=.-|.+.|+
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg---------------- 224 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG---------------- 224 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT----------------
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC----------------
Confidence 001 222222222222233579999999998887777777777766
Q ss_pred ccccCCccccCCCCcccccCCCCCcccccCCC
Q 016603 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (386)
Q Consensus 258 ~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p 289 (386)
++.|...+. +.+.+. +| +|+||++.
T Consensus 225 --~~~P~~~H~---pl~l~~-~g-~kLSKR~~ 249 (314)
T PF00749_consen 225 --WPPPPYAHL---PLILNE-DG-KKLSKRKG 249 (314)
T ss_dssp --SSS-EEEEE---EEEEET-TS-SBSSTTCS
T ss_pred --CCCcceEee---eeeecC-CC-cEechhhc
Confidence 344666665 346665 56 69999973
No 45
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.34 E-value=5.4e-06 Score=88.25 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=112.1
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 80 ~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
.|.+=| .|||.|||||...++.+|...+. ++.+++-|-|. |+ ....+..+.+..++.++||+++.- ++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~d~IleDL~WLGl~wDe~-~~ 123 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT-------NPSKEKEHFEQAILDDLATLGVSWDVG-PT 123 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCCCCc-ee
Confidence 455555 56799999999999999986655 77888888887 43 345567788999999999999853 78
Q ss_pred Ecccchh-hhHHHHH-------HhcccCHHHhhhhh------chH-----HHHH---h--hCC--C--------------
Q 016603 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMI------QFK-----EKSH---K--AGG--E-------------- 195 (386)
Q Consensus 156 ~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~~------~~k-----~~~~---~--~~~--~-------------- 195 (386)
+||+..+ +.+.+-. +.|.++-.+++... .+. +..+ . .+. +
T Consensus 124 ~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~ 203 (601)
T PTZ00402 124 YSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNE 203 (601)
T ss_pred eccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCC
Confidence 8999754 2222211 46777766653221 111 1000 0 000 0
Q ss_pred Cccccc------------------chhhHHHhhhhh---hcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCC
Q 016603 196 NVGVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (386)
Q Consensus 196 ~~~~g~------------------l~YP~LQAADil---~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~ 254 (386)
+.+++- -.||..+=|-.+ ..+.++|..|.|...+-..=.-|.+.|+
T Consensus 204 n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------------- 270 (601)
T PTZ00402 204 NKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------------- 270 (601)
T ss_pred CCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC-------------
Confidence 001100 134444433332 2478999999998888777777777765
Q ss_pred CCCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
+..|...+. ++ .++ +| .||||+.
T Consensus 271 -----~~~P~~~h~---~r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 -----IRKPIVEDF---SR-LNM-EY-SVMSKRK 293 (601)
T ss_pred -----CCCceEEEE---ee-EcC-CC-CcccccC
Confidence 345766665 44 466 66 5999996
No 46
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.34 E-value=3.7e-06 Score=89.31 Aligned_cols=181 Identities=18% Similarity=0.129 Sum_probs=112.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
+.+...+=.|||.+||||...++.+|...+. ++.+++-|-|.-.-+ .....+....+.+++.++|++++ .+++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~ 174 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVI 174 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccC
Confidence 3555666677899999999999989876544 678888888872211 12344556788899999999998 4799
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhhhhh-----------ch-------HHHHH----------hhC-C---CC
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------QF-------KEKSH----------KAG-G---EN 196 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~r~~-----------~~-------k~~~~----------~~~-~---~~ 196 (386)
||+..+ +.+..-. +.|.++-.++++.. +. .++.. +.. + .+
T Consensus 175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n 254 (567)
T PRK04156 175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN 254 (567)
T ss_pred cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence 999754 2221111 55667665553221 00 00000 000 0 00
Q ss_pred cc------------------cccchhhHHHhh---hhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCC
Q 016603 197 VG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (386)
Q Consensus 197 ~~------------------~g~l~YP~LQAA---Dil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~ 255 (386)
.+ -+...||.++=| |-...+.|+|.-|.|...+-..=..+.+.|+
T Consensus 255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------------- 320 (567)
T PRK04156 255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------------- 320 (567)
T ss_pred CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence 00 012236665433 3344589999999999888777777777665
Q ss_pred CCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
+..|...+. ++|. + +| .|||||.
T Consensus 321 ----~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ----WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ----CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 345777776 4554 4 56 5999996
No 47
>PLN02907 glutamate-tRNA ligase
Probab=98.20 E-value=1.3e-05 Score=87.77 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=109.0
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 80 ~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
.|.+=| .|||.|||||...++.+|...+. ++.+++-+-|. |+ +...+....+..++..+|+++++ ++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT-------dp~r~~~e~~~~I~~dl~wLG~~~d~--~~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT-------NPSKESDEFVENILKDIETLGIKYDA--VT 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCcCChHHHHHHHHHHHHcCCCCCC--cc
Confidence 466666 56699999999999999976544 77888888887 33 33445677888999999999995 68
Q ss_pred Ecccchh-hhHHHHH-------HhcccCHHHhhhh-----------hchHHHHHh--------h-C------------CC
Q 016603 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKM-----------IQFKEKSHK--------A-G------------GE 195 (386)
Q Consensus 156 ~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~-----------~~~k~~~~~--------~-~------------~~ 195 (386)
+||+..+ +.+.+-. +.|.++..+++.. .+..+..+. + + ..
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~ 363 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDP 363 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCC
Confidence 9999754 2222211 4567776655422 111110000 0 0 00
Q ss_pred Ccccccc------------------hhhHHHhhhhhh---cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCC
Q 016603 196 NVGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (386)
Q Consensus 196 ~~~~g~l------------------~YP~LQAADil~---~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~ 254 (386)
+.++.-+ .||..+=|-.+- .+.++|..|.|...+-..-.-+.+.++
T Consensus 364 n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg------------- 430 (722)
T PLN02907 364 NKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG------------- 430 (722)
T ss_pred CCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC-------------
Confidence 1111111 266666554432 479999999999888777777777765
Q ss_pred CCCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
++.|..... +++ ++ +| .||||++
T Consensus 431 -----~~~p~~~~f---~~l-~~-~~-~~lSKR~ 453 (722)
T PLN02907 431 -----LRKVHIWEF---SRL-NF-VY-TLLSKRK 453 (722)
T ss_pred -----CCCCeeEEE---EEE-cC-CC-ccccccc
Confidence 334532222 333 55 56 5999996
No 48
>PLN02859 glutamine-tRNA ligase
Probab=98.16 E-value=4.6e-06 Score=90.93 Aligned_cols=175 Identities=12% Similarity=0.093 Sum_probs=110.0
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 81 i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
|.+=| .|||.|||||...++.+|...+. ++.+++-+-|. |+ ....+....+..++..+|++|++ +++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT-------dp~r~~~e~~~~I~edL~WLG~~~d~--~~~ 335 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT-------NPEAEKKEYIDHIEEIVEWMGWEPFK--ITY 335 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCccchHHHHHHHHHHHHcCCCCCC--ccc
Confidence 44444 67799999999999999976654 77888888887 43 34556677888899999999984 789
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhhhhhc------------------hHHHHHh-h--C-----------CCC
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-A--G-----------GEN 196 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~r~~~------------------~k~~~~~-~--~-----------~~~ 196 (386)
||++.+ +-+.+-. +.|.++-.+++..-. |.++.+. + | ..+
T Consensus 336 qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n 415 (788)
T PLN02859 336 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDN 415 (788)
T ss_pred ccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCC
Confidence 999763 3332222 457777766532210 1111100 0 0 000
Q ss_pred cc-----c-------------ccchhhHHHhhhhhh---cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCC
Q 016603 197 VG-----V-------------ALLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (386)
Q Consensus 197 ~~-----~-------------g~l~YP~LQAADil~---~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~ 255 (386)
.+ . -..+||..-=|..+- .+.++++.|.|...+-..=.-+.+.|+
T Consensus 416 ~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg-------------- 481 (788)
T PLN02859 416 FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG-------------- 481 (788)
T ss_pred ceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC--------------
Confidence 00 0 112466655443332 479999999998877766666666665
Q ss_pred CCccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
+..|...+. + ..++ +| .||||+.
T Consensus 482 ----~~~P~~~~f---~-rLn~-~~-t~LSKRk 504 (788)
T PLN02859 482 ----LYQPYVWEY---S-RLNV-TN-TVMSKRK 504 (788)
T ss_pred ----CCCCcEEee---e-eECC-CC-CcccCcC
Confidence 334765554 4 3466 66 5999997
No 49
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.01 E-value=2.4e-05 Score=78.73 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=38.9
Q ss_pred cchhhHHHhhhhhhcccceeecccchhH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccC
Q 016603 201 LLTYPVLMASDILLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 277 (386)
Q Consensus 201 ~l~YP~LQAADil~~~adivpvG~DQ~~---h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL 277 (386)
+|.+=+==++--..+++|+.|.|.|+.. -...+.+||+++ || .+.|..+.-. +-++
T Consensus 219 KL~WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~ 277 (360)
T PF01921_consen 219 KLQWKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD 277 (360)
T ss_dssp EE-HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE
T ss_pred cccCCCcChhhhhhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe
Confidence 3333333334444568999999999999 999999999764 34 2345554332 2344
Q ss_pred CCCCcccccCCCCCCCeeeccC-----CHHHHHHHh
Q 016603 278 TDGLSKMSKSAPSDQSRINLLD-----PKDVIANKI 308 (386)
Q Consensus 278 ~dG~~KMSKS~p~~~s~I~L~D-----spe~I~~KI 308 (386)
+|.+|||||. ++.|.+.| +||.++-=+
T Consensus 278 -~g~~kmSsSk---G~~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 278 -KGGGKMSSSK---GNGITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp -S-----------------HHHHHTTS-HHHHHHHH
T ss_pred -CCCcccccCC---CCccCHHHHHHhcCHHHHHHHH
Confidence 4556999997 78888876 677666444
No 50
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.94 E-value=3.9e-05 Score=81.02 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=52.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcE-EEEEeccc--------------------eecC-C--C--C
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET-LFFIVDLH--------------------AITL-P--Y--D 127 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~--~~~~lQ~--~~~~-~i~IaDlh--------------------A~t~-~--~--~ 127 (386)
+..|-||+-|||.+||||....+. -+.+... |+++ +|+.+|.| .++. | . .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 578889999999999999877552 2333322 7776 57889998 2222 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 016603 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (386)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~ 160 (386)
..-.+++-....+.+-.+||+. +++.+++.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~ 128 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINP---EFIRASKQ 128 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE---EEEEHHHh
Confidence 1223333445566666789974 68888875
No 51
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.93 E-value=4.6e-05 Score=63.35 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=40.7
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHH
Q 016603 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139 (386)
Q Consensus 81 i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~ 139 (386)
+++|-.+ |.+|+||+.+ ++.+.++++ .+++.++|.++...+.+...++++.+...
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~ 56 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIE 56 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHH
Confidence 5677788 8999999987 688887773 68999999998876445555555444443
No 52
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=3e-05 Score=80.59 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=50.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHH---HHHHHh-ccCcE-EEEEeccceecC--CC---CHHHHHH-------------
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIK---NWIALQ-NSYET-LFFIVDLHAITL--PY---DTQQLSK------------- 133 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~---~~~~lQ-~~~~~-~i~IaDlhA~t~--~~---~~~~i~~------------- 133 (386)
...+|-||+-|||.+||||.-=.+. -...|. .|+++ +|+++|.+-=+. |. +++..++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 5678899999999999999843331 122243 36776 678888766553 21 2233333
Q ss_pred -----HHH----HHHHHHHHcCCCCCCcEEEEcccc
Q 016603 134 -----ATR----ETAAIYLACGIDNSKASVFVQSHV 160 (386)
Q Consensus 134 -----~~~----~~~~~~lA~Gldp~k~~i~~qS~~ 160 (386)
+++ ...+.+--+|+++ +++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 223 3344445569886 58888875
No 53
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.68 E-value=0.00017 Score=76.11 Aligned_cols=190 Identities=18% Similarity=0.190 Sum_probs=100.1
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEeccceecCC------CCHHHH-HHHHHHHHHHHHHcCC
Q 016603 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDLHAITLP------YDTQQL-SKATRETAAIYLACGI 147 (386)
Q Consensus 81 i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDlhA~t~~------~~~~~i-~~~~~~~~~~~lA~Gl 147 (386)
-|+|--|+|.+|+||..+++ .-+.++.+ |++|+ .-+.||-..+.. ..++.+ ......+.++|..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34688899999999998765 22334433 78875 456777433320 022232 3344677888999999
Q ss_pred CCCCcEEEEcccchhhhHHHHHHhcccCHHHhhhh-hch-HHH------HHhhCCC-Cc----ccccchhhHHHhhhhhh
Q 016603 148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDILL 214 (386)
Q Consensus 148 dp~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~-~~~-k~~------~~~~~~~-~~----~~g~l~YP~LQAADil~ 214 (386)
.++ .+++.|+........+.+. +|... ..+ ... ...++++ +. +=|..+|. +.||-+
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIAY 264 (507)
T ss_pred eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHHH
Confidence 876 3445454321111111111 11110 001 000 0111111 00 22555663 345544
Q ss_pred c-------ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCccccc
Q 016603 215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSK 286 (386)
Q Consensus 215 ~-------~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~-~l~~~~~~~lpgL~dG~~KMSK 286 (386)
. +--+-.+|.||..|+.-...+++.++.. . . .-. .++... ..+-+ .+| +||||
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~--~-------------~-~~~~~~h~~~-glv~~-~~g-~KMSk 325 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYD--P-------------D-ALEVLLHQMV-GLVRG-GEG-VKMST 325 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCC--c-------------c-cceEEEEEEE-EeeEC-CCC-CcccC
Confidence 2 2344599999999999999999988732 0 0 001 122111 22322 245 69999
Q ss_pred CCCCCCCeeeccCCHHH
Q 016603 287 SAPSDQSRINLLDPKDV 303 (386)
Q Consensus 287 S~p~~~s~I~L~Dspe~ 303 (386)
|. ++.|.+.|=-++
T Consensus 326 R~---Gn~i~l~dll~~ 339 (507)
T PRK01611 326 RA---GNVVTLDDLLDE 339 (507)
T ss_pred CC---CceeEHHHHHHH
Confidence 97 789998763333
No 54
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.66 E-value=0.00012 Score=77.44 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=66.6
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 81 i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
|.+=| .|||.|||||...++.+|...+. ++.+++-|-|. |+ ....+..+.+.+++..+||+++. .+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT-------NPEKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 44444 56799999999999999976654 77888888886 33 34556677888999999999954 3789
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhh
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~ 180 (386)
||+..+ +.+.+.. +.|.++-.+++
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 999754 3333323 45788877654
No 55
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.64 E-value=0.00014 Score=76.84 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=64.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~- 162 (386)
.|||.|||||...++.+|...+. ++.+++-|-|. |+ ....+..+.+.+++..+|++++. .+++||+..+
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~ 79 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT-------NPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDE 79 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CcccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHH
Confidence 58899999999999999976654 77888888887 33 34556778888999999999963 3788999754
Q ss_pred hhHHHHH-------HhcccCHHHhhh
Q 016603 163 HVELMWL-------LSSATPIGWLNK 181 (386)
Q Consensus 163 ~~~l~w~-------l~~~~~v~~L~r 181 (386)
+.+.+-. +.|.++-.++++
T Consensus 80 ~~~~a~~Li~~G~AY~c~cs~eel~~ 105 (522)
T TIGR00440 80 LYRYAEELIKKGLAYVDELTPEEIRE 105 (522)
T ss_pred HHHHHHHHHHcCCEEeecCCHHHHHH
Confidence 3222211 457888766543
No 56
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.64 E-value=0.00018 Score=67.36 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=77.8
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEe-ccceecCC-----CCHHHH-HHHHHHHHHHHHHcCCCC
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIV-DLHAITLP-----YDTQQL-SKATRETAAIYLACGIDN 149 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~Ia-DlhA~t~~-----~~~~~i-~~~~~~~~~~~lA~Gldp 149 (386)
|++-=|+|.+||||..+++ .-+.++.+ |++|+. ... |+=.-+.. ..+.++ ......+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 4555689999999988754 22333332 788763 333 44211110 012222 233456778888999987
Q ss_pred CCcEEEEcccchhhhHHHHH-Hhc--ccCHHHhhhhhchHHHHHhhCCC-Cc----ccccchhhHHHhhhhh------hc
Q 016603 150 SKASVFVQSHVRAHVELMWL-LSS--ATPIGWLNKMIQFKEKSHKAGGE-NV----GVALLTYPVLMASDIL------LY 215 (386)
Q Consensus 150 ~k~~i~~qS~~~~~~~l~w~-l~~--~~~v~~L~r~~~~k~~~~~~~~~-~~----~~g~l~YP~LQAADil------~~ 215 (386)
+ .++..|+........|. |.. ..... .-..-|. . ..+++. +. +=|..+|. +.|+- .+
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~--~g~~~~~-~-~~~~~~~d~vl~rsdG~~~Y~---~~DlA~~~~~~~~ 156 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEE--DGALWLD-L-TEFGDDKDRVLVRSDGTYTYF---TRDIAYHLDKFER 156 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEe--CCcEEEe-c-hhhCCCCCeEEEECCCCccch---HHHHHHHHHHHhc
Confidence 6 34455554221111111 110 00000 0000000 0 001100 10 12556665 34442 25
Q ss_pred cccee--ecccchhHHHHHHHHHHHHHhh
Q 016603 216 QSDFV--PVGEDQKQHLELTRELAERVNY 242 (386)
Q Consensus 216 ~adiv--pvG~DQ~~h~elaRdia~k~n~ 242 (386)
++|.+ .+|.||..|+.--+.+++.++.
T Consensus 157 ~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 157 GADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 78888 9999999999999999999873
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.59 E-value=0.001 Score=62.73 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=43.6
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~ 145 (386)
....+|-=|-|.+||||....+ .-+.+.++ |++|+++. .|.|..=. ..++ +-.++++..+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3444677778999999976544 22333332 78887654 34443210 1244 44555667788888899
Q ss_pred CCCC
Q 016603 146 GIDN 149 (386)
Q Consensus 146 Gldp 149 (386)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 58
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.58 E-value=0.00019 Score=78.89 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=66.6
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 80 ~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
.|.|=| .|||.+||||...++.+|...+. ++.+++-+-|. |+ ....+....+.+++..+|++++.. ++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT-------d~~r~~~e~~~~I~~dl~wLG~~wd~~-~~ 102 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT-------NPETEDTEYVEAIKDDVRWLGFDWGEH-LY 102 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC-------CCCcCChHHHHHHHHHHHHcCCCCCCC-ce
Confidence 355555 56799999999999999976654 77888888886 33 344566778889999999999853 79
Q ss_pred Ecccchh-hhHHHH-------HHhcccCHHHhh
Q 016603 156 VQSHVRA-HVELMW-------LLSSATPIGWLN 180 (386)
Q Consensus 156 ~qS~~~~-~~~l~w-------~l~~~~~v~~L~ 180 (386)
+||+..+ +.+.+- .+.|.++-.+++
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~ 135 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIR 135 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHH
Confidence 9999754 222111 156788766654
No 59
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.00015 Score=76.91 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=66.2
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
+.=..=.|||.|||||...++.+|...+. ++.+++-|-|. |+ ....+....+.+++..+||++++ +++|
T Consensus 53 ~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~~q 123 (574)
T PTZ00437 53 YFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VTFS 123 (574)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CCcC
Confidence 33344467799999999999999976654 77888888887 33 34556777888999999999985 5689
Q ss_pred ccchh-hhHHHHH-------HhcccCHHHhh
Q 016603 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (386)
Q Consensus 158 S~~~~-~~~l~w~-------l~~~~~v~~L~ 180 (386)
|++.+ +.+.+-. +.|.++-.+++
T Consensus 124 S~y~~~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 124 SDYFDQLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred chhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 99755 3222222 45788777664
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.51 E-value=0.00024 Score=75.63 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=66.7
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 79 ~~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
-.|.+=| .|||.+||||...++.+|...+. ++.+++-+-|. |+ ....+....+..++.++|++|+ .+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT-------Dp~R~~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT-------DPRRVKPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC-------CcccccHHHHHHHHHHHHHcCCCCC--cc
Confidence 3466666 45699999999999989876544 67788888887 32 3445577788899999999998 47
Q ss_pred EEcccchh-hhHHHH-------HHhcccCHHHhh
Q 016603 155 FVQSHVRA-HVELMW-------LLSSATPIGWLN 180 (386)
Q Consensus 155 ~~qS~~~~-~~~l~w-------~l~~~~~v~~L~ 180 (386)
++||+..+ +.+..- .+.|.++-.+++
T Consensus 163 ~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 163 VYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 89999754 222211 156788877664
No 61
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.51 E-value=0.00091 Score=69.95 Aligned_cols=74 Identities=8% Similarity=-0.045 Sum_probs=47.3
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-c-C-----CCCH-HHHHHHHHHHHHHH
Q 016603 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDT-QQLSKATRETAAIY 142 (386)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~Ia-DlhA~-t-~-----~~~~-~~i~~~~~~~~~~~ 142 (386)
.+.++| +|-=|.|.+||||..+.+ .-+.+.++ |++|++..+ |.|.- + . ..++ +..+.++..+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345666 888899999999987654 22334433 788887665 33311 1 0 1233 33445667888999
Q ss_pred HHcCC-CCC
Q 016603 143 LACGI-DNS 150 (386)
Q Consensus 143 lA~Gl-dp~ 150 (386)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 99999 555
No 62
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.49 E-value=0.00086 Score=66.25 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=37.9
Q ss_pred CCCcchhhhHHHHH-----HHHHHHhccCcEEE-EEeccceecCC-------C-------------C-HHHHHHHHHHHH
Q 016603 87 PTGSIHLGNYLGAI-----KNWIALQNSYETLF-FIVDLHAITLP-------Y-------------D-TQQLSKATRETA 139 (386)
Q Consensus 87 PTG~lHLGnyl~~i-----~~~~~lQ~~~~~~i-~IaDlhA~t~~-------~-------------~-~~~i~~~~~~~~ 139 (386)
|+|.+||||+.+.+ .++.++ .|++|.+ .-.|.|..-.. . . .+-.+++...+.
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHK 89 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999998743 334333 3788754 45577664220 0 1 122333445677
Q ss_pred HHHHHcCCCCC
Q 016603 140 AIYLACGIDNS 150 (386)
Q Consensus 140 ~~~lA~Gldp~ 150 (386)
+++.++|+..+
T Consensus 90 ~~l~~lgI~~D 100 (312)
T cd00668 90 EDFRRLGISYD 100 (312)
T ss_pred HHHHHhCcccc
Confidence 88888998654
No 63
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.41 E-value=0.00055 Score=67.92 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCcchhhhHHHHH--HHHHHHh--ccCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 016603 87 PTGSIHLGNYLGAI--KNWIALQ--NSYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 87 PTG~lHLGnyl~~i--~~~~~lQ--~~~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
|+|.+||||..+.+ .-+.+++ .|++|.+ .-.|.|..-. ..++ +-.++....+.+++.++|+.++
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 68999999987755 1233333 3788754 4456654221 1233 3344556778888889999765
No 64
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.82 E-value=0.022 Score=59.78 Aligned_cols=72 Identities=11% Similarity=-0.056 Sum_probs=44.5
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHH-HHHHHHHHHHHHHHHcC
Q 016603 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRETAAIYLACG 146 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~Ia-DlhA~-t-~-----~~~~~-~i~~~~~~~~~~~lA~G 146 (386)
...+|.=|-|.+||||..+.+ .-+.+.++ |++|.++.+ |.|.- + . ..++. ..+.+...+.+++.++|
T Consensus 24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~Lg 103 (465)
T TIGR00435 24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALN 103 (465)
T ss_pred EEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 344788888999999987655 22333332 788876554 44422 1 0 12443 33455677888899999
Q ss_pred CCCCC
Q 016603 147 IDNSK 151 (386)
Q Consensus 147 ldp~k 151 (386)
+.++.
T Consensus 104 I~~d~ 108 (465)
T TIGR00435 104 VLPPD 108 (465)
T ss_pred CCCCc
Confidence 97553
No 65
>PLN02946 cysteine-tRNA ligase
Probab=95.91 E-value=0.1 Score=56.01 Aligned_cols=74 Identities=12% Similarity=-0.075 Sum_probs=43.1
Q ss_pred CCCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHh--ccCcEEEEE-eccce--ecC-----CCCH-HHHHHHHHHHH
Q 016603 75 SSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQ--NSYETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETA 139 (386)
Q Consensus 75 ~~~~~~i~tGi~PT--G~lHLGnyl~~i--~~~~~lQ--~~~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~ 139 (386)
.+.+.++|+= .|| +.+||||..+.+ .-+.++. .|++|+++. .|.|. ++. ..++ +..++++..+.
T Consensus 77 ~~~~v~~Y~C-GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~ 155 (557)
T PLN02946 77 VEGKVGMYVC-GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFL 155 (557)
T ss_pred CCCceeEEEe-CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445566632 566 789999987654 2233333 378886543 33331 111 1244 44455667888
Q ss_pred HHHHHcCCCC
Q 016603 140 AIYLACGIDN 149 (386)
Q Consensus 140 ~~~lA~Gldp 149 (386)
+++.++|+.+
T Consensus 156 ~d~~~LnI~~ 165 (557)
T PLN02946 156 SDMAYLHCLP 165 (557)
T ss_pred HHHHHCCCCC
Confidence 8999999853
No 66
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.022 Score=58.60 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=65.3
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE---
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS--- 153 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~--- 153 (386)
+|+-..=-|||.+|||-...|+.|++-..+ |++.++-|-|- |. ..+....+.+..++..+||+||..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~g 106 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVG 106 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcC
Confidence 455555567899999999999989875555 78888888886 32 3344455667788999999999764
Q ss_pred ----EEEcccchhhh-HHHHH-------HhcccCHHHhh
Q 016603 154 ----VFVQSHVRAHV-ELMWL-------LSSATPIGWLN 180 (386)
Q Consensus 154 ----i~~qS~~~~~~-~l~w~-------l~~~~~v~~L~ 180 (386)
=|.||+-.+.- .-+.. +-|+++-.||.
T Consensus 107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~ 145 (524)
T KOG1149|consen 107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLD 145 (524)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHH
Confidence 27899864421 11111 34777766654
No 67
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.21 Score=53.52 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=54.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~l 143 (386)
+..|-|.+ -|.|.+||||....+ .-|.++|+ |+++++ +=.|-|..-. ..+| +.+.++......+|.
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444444 578999999987655 44777765 888865 4456665432 2355 445567778999999
Q ss_pred HcCCCCCCcEEEEcccchhh
Q 016603 144 ACGIDNSKASVFVQSHVRAH 163 (386)
Q Consensus 144 A~Gldp~k~~i~~qS~~~~~ 163 (386)
+++|+-| .|....-++|
T Consensus 86 ~l~IsfD---~F~rTt~~~h 102 (558)
T COG0143 86 ALNISFD---NFIRTTSPEH 102 (558)
T ss_pred HhCCccc---ccccCCCHHH
Confidence 9999876 4444444444
No 68
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.83 E-value=0.17 Score=55.39 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=48.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecc-ceecC-------CCCH-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDL-HAITL-------PYDT-QQLSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~IaDl-hA~t~-------~~~~-~~i~~~~~~~~~~~l 143 (386)
+..|.+++ -|+|.+||||..+.+ .-+.++++ |++|+++-++. |..-. ..++ +...+++..+.+++.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677777 689999999988755 22334433 88888766544 33211 1244 445566778889999
Q ss_pred HcCCCCC
Q 016603 144 ACGIDNS 150 (386)
Q Consensus 144 A~Gldp~ 150 (386)
++|++++
T Consensus 83 ~l~i~~d 89 (673)
T PRK00133 83 GFGISFD 89 (673)
T ss_pred HhCCCCC
Confidence 9999887
No 69
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.55 E-value=0.27 Score=50.44 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCCCcchhhhHHHHH--HHHHHHh--ccCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCCc
Q 016603 86 QPTGSIHLGNYLGAI--KNWIALQ--NSYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSKA 152 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i--~~~~~lQ--~~~~~~i-~IaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~Gldp~k~ 152 (386)
=|.|.+||||..+.+ .-+.+++ .|+++++ .=.|-|..-. ..+++ -+.++...+.+.+.++||+.|
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 478999999987654 2233333 3788764 5578887643 23554 455677888899999999998
Q ss_pred EEEEcccchhh
Q 016603 153 SVFVQSHVRAH 163 (386)
Q Consensus 153 ~i~~qS~~~~~ 163 (386)
.|.++.-.+|
T Consensus 87 -~F~rTt~~~h 96 (391)
T PF09334_consen 87 -RFIRTTDDRH 96 (391)
T ss_dssp -EEEETTSHHH
T ss_pred -ceeCCCCHHH
Confidence 4555544444
No 70
>PLN02224 methionine-tRNA ligase
Probab=92.92 E-value=0.56 Score=51.05 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=49.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecccee--cC-----CCCH-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI--TL-----PYDT-QQLSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~--t~-----~~~~-~~i~~~~~~~~~~~l 143 (386)
+..|-+++ -|+|.+||||..+.+ .-+.+++. |++|++ .=.|-|.. .. ..++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 45666777 788999999987755 22334433 788865 44677763 11 1233 556667778888999
Q ss_pred HcCCCCC
Q 016603 144 ACGIDNS 150 (386)
Q Consensus 144 A~Gldp~ 150 (386)
++||+++
T Consensus 150 ~l~I~~D 156 (616)
T PLN02224 150 DLDIAYD 156 (616)
T ss_pred HcCCCCC
Confidence 9999987
No 71
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=92.35 E-value=0.16 Score=52.00 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=7.8
Q ss_pred chHHHHHHhcCCCC
Q 016603 330 NNLLSIYQLISGKT 343 (386)
Q Consensus 330 ~nll~i~~~~~~~~ 343 (386)
+...++.+.+.+.+
T Consensus 283 ~la~ei~~~vhg~~ 296 (377)
T TIGR00234 283 NLAKEITKYVHGEE 296 (377)
T ss_pred HHHHHHHHHhcCHH
Confidence 33556666666644
No 72
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.58 Score=49.65 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=47.7
Q ss_pred CceEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 78 KKRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 78 ~~~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
.=.|.+-| +|||.+||||.-.++.++-..|. .+++++-.-|- +|. ++-.+--+.+..++--+||.|++ +
T Consensus 198 ~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDT----NPa--KE~~eFe~~IleDl~~LgIkpd~--~ 269 (712)
T KOG1147|consen 198 MGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDT----NPA--KENEEFEDVILEDLSLLGIKPDR--V 269 (712)
T ss_pred cCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCC----Ccc--hhhHHHHHHHHHHHHHhCcCcce--e
Confidence 33555555 78899999999988877754454 34555554443 322 22233334566666677999995 4
Q ss_pred EEcccchh
Q 016603 155 FVQSHVRA 162 (386)
Q Consensus 155 ~~qS~~~~ 162 (386)
=.-|++.+
T Consensus 270 TyTSDyF~ 277 (712)
T KOG1147|consen 270 TYTSDYFD 277 (712)
T ss_pred eechhhHH
Confidence 44566643
No 73
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=89.97 E-value=0.75 Score=49.12 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=45.8
Q ss_pred eEEEeeCCC--CcchhhhHHHH-H-----HHHHHHhccCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHH
Q 016603 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (386)
Q Consensus 80 ~i~tGi~PT--G~lHLGnyl~~-i-----~~~~~lQ~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~ 142 (386)
.+++.-=|+ |.+||||..+. + ..+.+++ |++|++.. .|.|..-. ..++ +-.++++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444555555 99999998875 2 3343333 78887654 45554321 1244 44466778889999
Q ss_pred HHcCCCCCC
Q 016603 143 LACGIDNSK 151 (386)
Q Consensus 143 lA~Gldp~k 151 (386)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999873
No 74
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=88.91 E-value=1.7 Score=48.88 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=47.8
Q ss_pred CceEEEeeCCC--CcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCC-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYD-TQQLSKATRETAAIY 142 (386)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~-~~~i~~~~~~~~~~~ 142 (386)
+..++.|+ |+ |.+|+||.++.+.+ +.++|. |++|.+.. -|-|.+-. ..+ .+-..+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 66 99999999875522 444544 78887655 45554431 113 345666778888999
Q ss_pred HHcCCCCC
Q 016603 143 LACGIDNS 150 (386)
Q Consensus 143 lA~Gldp~ 150 (386)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998444
No 75
>PLN02610 probable methionyl-tRNA synthetase
Probab=88.42 E-value=2.5 Score=47.44 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred CceEEEee-CCCCcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~-i--~~~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~ 142 (386)
+..|.|.+ -|+|.+||||..+. + .-+.+++. |++|+++- .|-|..-. ..++ +.+.++...+...|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444444 46799999999863 3 33555554 88887655 56666542 2244 44555667788889
Q ss_pred HHcCCCCC
Q 016603 143 LACGIDNS 150 (386)
Q Consensus 143 lA~Gldp~ 150 (386)
.++||+.|
T Consensus 98 ~~l~i~~D 105 (801)
T PLN02610 98 DWFDISFD 105 (801)
T ss_pred HHcCCccc
Confidence 99999988
No 76
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=87.30 E-value=1.1 Score=47.52 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=39.8
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 016603 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 87 PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~Gldp~ 150 (386)
|+|.+||||....+ .-+.+.++ |++|.+.. .|.|..-. ..++++ ...+...+.+++.++|++++
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999987654 12333332 78887644 44443211 124433 44456778888999999876
No 77
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=87.19 E-value=1.2 Score=44.09 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=40.7
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCC
Q 016603 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 87 PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~Gldp~k 151 (386)
|+|.+||||..+.+.. +.+.++ |++|.+. =.|.|..-. ..++++ .+.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999885522 333332 7887654 356664321 124433 444566788889999998873
No 78
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.68 E-value=2 Score=45.22 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=40.3
Q ss_pred CCCcchhhhHHHHH--HHHHHHh--ccCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 016603 87 PTGSIHLGNYLGAI--KNWIALQ--NSYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 87 PTG~lHLGnyl~~i--~~~~~lQ--~~~~~~i~-IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
|+|.+||||..+.+ .-+.+.+ .|++|.+. -.|.|..-. ..++ +..+.+...+.+++.++|++++
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 56999999987644 2233443 37888654 355553311 1233 3445566778899999999887
No 79
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=85.99 E-value=0.51 Score=53.61 Aligned_cols=58 Identities=26% Similarity=0.258 Sum_probs=34.9
Q ss_pred hcccceeecccchh---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCC
Q 016603 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (386)
Q Consensus 214 ~~~adivpvG~DQ~---~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~ 290 (386)
.+-+|+...|.||. .|-.+-..++- .|. +.|..++.- .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g~--------------~P~k~vl~H--G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-----RGK--------------APYKQVLTH--GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-----cCC--------------CccceeEEe--eeEECC-CC-CCCCCCC--
Confidence 45689999999997 33444444432 232 123344331 455554 56 7999997
Q ss_pred CCCeeec
Q 016603 291 DQSRINL 297 (386)
Q Consensus 291 ~~s~I~L 297 (386)
||.|..
T Consensus 598 -GNvIdP 603 (912)
T PRK05743 598 -GNVIDP 603 (912)
T ss_pred -CCcCCH
Confidence 677754
No 80
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=85.96 E-value=1.8 Score=47.24 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 016603 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
-|+|.+||||..+.+ .-+.++++ |++|++ +-.|.|..-. ..++ +-+..+...+.+++.++|++++
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 356999999987654 22334433 788765 5567665432 1244 3444556778888999999877
No 81
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.69 E-value=1.4 Score=49.38 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH-----HHHHHHhccCcEEEEEeccceecCC---------CCH-HHHHHHHHHHHH
Q 016603 77 VKKRIVSGV-QPTGSIHLGNYLGAI-----KNWIALQNSYETLFFIVDLHAITLP---------YDT-QQLSKATRETAA 140 (386)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnyl~~i-----~~~~~lQ~~~~~~i~IaDlhA~t~~---------~~~-~~i~~~~~~~~~ 140 (386)
+++.|..=+ -|||.||+||..+-. ..+.++| |++|.+-++ |||+=.| .+| .-...++.++..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~-GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ-GYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhc-CCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 466666666 699999999975422 3344433 788877654 7877543 244 445667888899
Q ss_pred HHHHcCC--CCCC
Q 016603 141 IYLACGI--DNSK 151 (386)
Q Consensus 141 ~~lA~Gl--dp~k 151 (386)
++.++|+ |.++
T Consensus 112 qlk~lG~siDW~R 124 (814)
T COG0495 112 QLKSLGFSIDWRR 124 (814)
T ss_pred HHHHhCCcccccc
Confidence 9999987 5554
No 82
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=85.54 E-value=0.57 Score=47.86 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=23.2
Q ss_pred CCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-Eeccce
Q 016603 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHA 121 (386)
Q Consensus 87 PTG~lHLGnyl~~i~--~~~~lQ~--~~~~~i~-IaDlhA 121 (386)
|+|.+||||..+.+. -+.+++. |++|++. =.|-|.
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG 51 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAG 51 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCC
Confidence 679999999987652 2444444 7888654 456663
No 83
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=85.49 E-value=1.4 Score=44.17 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=23.0
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecccee
Q 016603 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI 122 (386)
Q Consensus 87 PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~ 122 (386)
|+|.+||||..+.+ .-+.+++. |++|++ .-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 47999999998754 22334333 788865 44565554
No 84
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=83.95 E-value=6.5 Score=41.76 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=45.7
Q ss_pred CCCCCceEE-EeeCCCCcchhhhHHHHH--HHHHHHh--ccCcEEEE--EeccceecC----------------CCCH-H
Q 016603 74 SSSVKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQ--NSYETLFF--IVDLHAITL----------------PYDT-Q 129 (386)
Q Consensus 74 ~~~~~~~i~-tGi~PTG~lHLGnyl~~i--~~~~~lQ--~~~~~~i~--IaDlhA~t~----------------~~~~-~ 129 (386)
..+.+.++| .|.=+-+.+||||....+ .-+.++. .|++|+++ |.|+--++. ..++ +
T Consensus 19 ~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e 98 (490)
T PRK14536 19 IEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLE 98 (490)
T ss_pred CCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHH
Confidence 334456666 455555889999987754 2233333 27888765 567621111 1233 3
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 016603 130 QLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 130 ~i~~~~~~~~~~~lA~Gldp~ 150 (386)
....++..+.+++.++|+.+.
T Consensus 99 ~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 99 IAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 344455677888899998764
No 85
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=83.82 E-value=0.55 Score=49.35 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=35.6
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
..|+...|.||...+-.. .+|.-+. .| .+.|..++.. .++- + +| +|||||. +|.|
T Consensus 254 ~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~i 308 (511)
T PRK11893 254 PADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNVI 308 (511)
T ss_pred CCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcEE
Confidence 578999999998853222 1222211 11 2246555543 3443 4 67 7999998 7999
Q ss_pred eccC
Q 016603 296 NLLD 299 (386)
Q Consensus 296 ~L~D 299 (386)
.+.|
T Consensus 309 ~~~d 312 (511)
T PRK11893 309 DPFD 312 (511)
T ss_pred cHHH
Confidence 8754
No 86
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=83.08 E-value=3 Score=47.18 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=45.1
Q ss_pred ceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------CCC-HHHHHHHHHHHHHHHHH
Q 016603 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYD-TQQLSKATRETAAIYLA 144 (386)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~t~-------~~~-~~~i~~~~~~~~~~~lA 144 (386)
..+..|+ -|||.+|+||.++.+.. +.+.+. |++|.+..+ |-|.+-. ..+ .+-..+++..+.+++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4555553 34699999998875522 444444 888876554 4454421 112 35566677888899999
Q ss_pred cCCCC
Q 016603 145 CGIDN 149 (386)
Q Consensus 145 ~Gldp 149 (386)
+|+..
T Consensus 111 lG~~~ 115 (842)
T TIGR00396 111 LGFSY 115 (842)
T ss_pred hCCcc
Confidence 99744
No 87
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.93 E-value=0.92 Score=45.55 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=32.4
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+.+|+.+.|.||.... +..-+...+. .+|. ..|..++.. ..+... +| +|||||. +|.
T Consensus 251 ~p~d~~~~GkDii~~w-f~~~~~~~~~-~~~~--------------~p~~~~~~h--g~~~~~-~g-~KmSKS~---gn~ 307 (338)
T cd00818 251 FPADFILEGSDQTRGW-FYSLLLLSTA-LFGK--------------APYKNVIVH--GFVLDE-DG-RKMSKSL---GNY 307 (338)
T ss_pred CCCeEEeecchHHhHH-HHHHHHHHHH-hcCC--------------CccceEEEE--eeEECC-CC-CCCCCCC---CCc
Confidence 3468999999997411 2222222222 1221 112333321 334333 67 6999998 789
Q ss_pred eecc
Q 016603 295 INLL 298 (386)
Q Consensus 295 I~L~ 298 (386)
|.+.
T Consensus 308 i~~~ 311 (338)
T cd00818 308 VDPQ 311 (338)
T ss_pred CCHH
Confidence 9864
No 88
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=82.04 E-value=1 Score=46.25 Aligned_cols=75 Identities=24% Similarity=0.183 Sum_probs=44.9
Q ss_pred ccchhhHHHhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 016603 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (386)
Q Consensus 200 g~l~YP~LQAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~ 278 (386)
|.-+=..-|+..+|--.-||--+|.|-. +|+| .++|...- .+|.. +-+...++. . +...
T Consensus 198 GWHiECsam~~~~lg~~~DIH~GG~DL~FPHHe--neiaq~~a-~~g~~-------------~~~~~w~H~--g-~l~~- 257 (384)
T PRK12418 198 GWHIECSAIALNRLGSGFDIQGGGSDLIFPHHE--FSAAHAEA-ATGER-------------RFARHYVHA--G-MIGL- 257 (384)
T ss_pred hhHHHHHHHHHHHcCCCcccccCccccccchhH--hHHHHHHH-hcCCC-------------CcceEEEEC--C-EECC-
Confidence 3344456777777777789999999964 5665 34444322 13321 113344442 2 3343
Q ss_pred CCCcccccCCCCCCCeeecc
Q 016603 279 DGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~ 298 (386)
+| +|||||. +|.|.+.
T Consensus 258 ~G-~KMSKSl---GN~i~~~ 273 (384)
T PRK12418 258 DG-EKMSKSR---GNLVFVS 273 (384)
T ss_pred CC-CcccCcC---CCcCCHH
Confidence 67 7999998 7888764
No 89
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.90 E-value=0.95 Score=49.02 Aligned_cols=60 Identities=32% Similarity=0.402 Sum_probs=31.3
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+-+|+...|.||.... +.+-+..... .++.. .| +..+.+ .++... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~~-----------pf--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGKE-----------PF--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSST-----------SB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccCC-----------ch--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 4689999999997654 2222222211 12221 12 333443 456554 67 7999997 788
Q ss_pred eec
Q 016603 295 INL 297 (386)
Q Consensus 295 I~L 297 (386)
|..
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 864
No 90
>PLN02563 aminoacyl-tRNA ligase
Probab=81.58 E-value=9.6 Score=43.81 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CceEEEee-CCCCc-chhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (386)
Q Consensus 78 ~~~i~tGi-~PTG~-lHLGnyl~~i--~~~~~lQ~--~~~~~i~Ia-DlhA~t~-------~~~~-~~i~~~~~~~~~~~ 142 (386)
++.|.+|+ -|+|. +|+||.++.+ .-+.+++. |++|++..+ |-|.+-. ...+ +...+++..+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35666676 46797 9999988754 22444543 888876554 5555531 1122 34556778888999
Q ss_pred HHcCC--CCCC
Q 016603 143 LACGI--DNSK 151 (386)
Q Consensus 143 lA~Gl--dp~k 151 (386)
..+|+ |.++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99995 6655
No 91
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=81.45 E-value=1.1 Score=51.67 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=38.8
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
+-+|+...|.||.. +=++|-++..+... | ..| ..++.. .+|..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii~-~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDIIF-FWVARMMMMGLHFM-G---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHHh-HHHHHHHHHHHHhc-C---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 45789999999984 56667776665432 1 124 323321 445443 56 7999998 78
Q ss_pred eeeccC
Q 016603 294 RINLLD 299 (386)
Q Consensus 294 ~I~L~D 299 (386)
.|...|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 887654
No 92
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=80.31 E-value=1 Score=51.06 Aligned_cols=61 Identities=28% Similarity=0.313 Sum_probs=34.9
Q ss_pred cccceeecccchhH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~-h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
+-+|+...|.||.. |+-+..-...- .++. -+.|..++.. ..+.. +| +|||||. ||
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a---~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~---GN 584 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVA---IFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK---GN 584 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHH---hcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---CC
Confidence 45799999999965 55544222111 1221 1235444432 34432 66 7999998 78
Q ss_pred eeeccC
Q 016603 294 RINLLD 299 (386)
Q Consensus 294 ~I~L~D 299 (386)
.|...|
T Consensus 585 vVdp~e 590 (897)
T PRK12300 585 VIPLRK 590 (897)
T ss_pred CCCHHH
Confidence 887543
No 93
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=80.16 E-value=1.2 Score=50.31 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=33.1
Q ss_pred cccceeecccchhH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCC
Q 016603 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (386)
Q Consensus 215 ~~adivpvG~DQ~~---h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~ 291 (386)
+-+|+...|.||.. |..+-.-++ + +|. ..|..++.. .++... +| +|||||.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~--~---~~~--------------~P~k~v~~h--G~vl~~-~G-~KMSKSk--- 616 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA--L---FGQ--------------APYKNVITH--GFTLDE-KG-RKMSKSL--- 616 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH--H---cCC--------------CChHhhEec--ceEECC-CC-CCcCCCC---
Confidence 35799999999965 222222221 1 121 123333321 344443 56 6999998
Q ss_pred CCeeeccC
Q 016603 292 QSRINLLD 299 (386)
Q Consensus 292 ~s~I~L~D 299 (386)
||.|...|
T Consensus 617 GNvI~p~d 624 (861)
T TIGR00392 617 GNVVDPLK 624 (861)
T ss_pred CCCCCHHH
Confidence 78887644
No 94
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=79.76 E-value=1.9 Score=46.41 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred Hhhhhhhc------cc--ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCC
Q 016603 208 MASDILLY------QS--DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLT 278 (386)
Q Consensus 208 QAADil~~------~a--divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~-l~~~~~~~lpgL~ 278 (386)
.+.||-++ ++ -|-.+|.||..|+.-...++..++. +.|.- .+... -++
T Consensus 312 ~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~------------------~~~~~l~h~~~-~~V---- 368 (566)
T TIGR00456 312 LTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGF------------------YKKKELIHLNF-GMV---- 368 (566)
T ss_pred chhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCC------------------CCCCceEEEEE-EEE----
Confidence 45666543 23 3567999999999999999999873 22322 22211 122
Q ss_pred CCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 279 DGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
++ .|||||. |+.|.+.|=.+++.+
T Consensus 369 ~~-~kmSkr~---Gn~V~~~dll~~~~~ 392 (566)
T TIGR00456 369 PL-GSMKTRR---GNVISLDNLLDEASK 392 (566)
T ss_pred EC-CCCCccC---CceeeHHHHHHHHHH
Confidence 23 5999997 899999865555444
No 95
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=79.67 E-value=4.2 Score=41.50 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=33.8
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P--~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
.+|+...|.||...+-.. .++..... .|. .| ..+.+ ..+.++ +| +|||||. +|
T Consensus 296 p~d~~~~G~D~~~~h~~~-~l~~~~~~-~g~---------------~p~~~v~~h---g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 296 PTSLLVTGHDIIFFWVAR-MIMRGLKL-TGK---------------LPFKEVYLH---GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCeeeeecCcCchHHHH-HHHHHHHh-hCC---------------CchHHeEee---eeEECC-CC-CCccccC---CC
Confidence 479999999997654433 33332211 121 13 22222 445555 56 6999997 78
Q ss_pred eeecc
Q 016603 294 RINLL 298 (386)
Q Consensus 294 ~I~L~ 298 (386)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 88763
No 96
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=79.49 E-value=1.3 Score=50.23 Aligned_cols=60 Identities=30% Similarity=0.391 Sum_probs=38.3
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCcccccCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P--~~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
+-+|+...|.||... =++|-++..+... | +.| ..+++ ..+-.. +| +|||||. |
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~~-~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHFT-G---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHhc-C---------------CCchhheEEe---eeEECC-CC-CCcccCC---C
Confidence 467999999999874 5566666554321 1 135 23333 455554 66 7999998 7
Q ss_pred CeeeccC
Q 016603 293 SRINLLD 299 (386)
Q Consensus 293 s~I~L~D 299 (386)
|.|...|
T Consensus 527 NvIdP~d 533 (874)
T PRK05729 527 NVIDPLD 533 (874)
T ss_pred CCCCHHH
Confidence 8887544
No 97
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=77.58 E-value=1.6 Score=45.35 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=42.8
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccce--ecC-----CCCHH-HHHHHHHHHHHHH
Q 016603 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQ-QLSKATRETAAIY 142 (386)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~Ia-DlhA--~t~-----~~~~~-~i~~~~~~~~~~~ 142 (386)
.+.++| +|-=|=+.+||||..+.+ .-+.++++ |++|.++.. |.|. ++. ..+++ ..++++..+.+++
T Consensus 35 ~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~ 114 (411)
T TIGR03447 35 PEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDM 114 (411)
T ss_pred CcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345554 565555889999987755 33444443 788876543 3331 111 12443 3445567778888
Q ss_pred HHcCCC
Q 016603 143 LACGID 148 (386)
Q Consensus 143 lA~Gld 148 (386)
.++|+.
T Consensus 115 ~~Lni~ 120 (411)
T TIGR03447 115 EALRVL 120 (411)
T ss_pred HHcCCC
Confidence 888864
No 98
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=77.41 E-value=1.9 Score=48.34 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=34.4
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
-+|+...|.||... -+.+-++..... +|. .| ..++.. ..+... +| +|||||. +|.
T Consensus 486 P~d~~~~G~Di~~~-w~~~~l~~~~~~-~~~---------------~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIRT-WLFYTILRAYLL-TGK---------------LPWKNIMIS--GMVLDP-DG-KKMSKSK---GNV 541 (800)
T ss_pred CceEEEeecchhhh-HHHHHHHHHHHh-cCC---------------CCcceEEEe--eEEECC-CC-CCCCCCC---CCC
Confidence 47899999999853 233344333221 221 13 223221 445444 66 7999998 788
Q ss_pred eeccC
Q 016603 295 INLLD 299 (386)
Q Consensus 295 I~L~D 299 (386)
|...|
T Consensus 542 i~p~~ 546 (800)
T PRK13208 542 VTPEE 546 (800)
T ss_pred CCHHH
Confidence 87644
No 99
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=76.78 E-value=1.7 Score=43.13 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.2
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
..++...|.|+..++.+.- .|--.. .| .+.|..++.. ..+ .+ +| +|||||. +|.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578999999988754311 111111 11 2335444442 233 33 56 6999997 7888
Q ss_pred ecc
Q 016603 296 NLL 298 (386)
Q Consensus 296 ~L~ 298 (386)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 863
No 100
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=76.29 E-value=1.6 Score=49.89 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=41.5
Q ss_pred cccceeecccchhH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~-h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
|-+|+...|.||.+ |+.+.. +...- .++.. +-|..++.. ..+.. +| +|||||. ||
T Consensus 572 yP~D~~~~GkDii~~H~~~~i--~~~~a-~~~~~-------------~~Pk~i~~~--G~vl~--~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYI--FHHVA-IFPEK-------------FWPRGIVVN--GYVML--EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHHH--HHHHH-cCCcc-------------ccCcEEEEe--ceEEe--CC-ccccCcC---CC
Confidence 45799999999976 555442 22111 11210 124444432 33432 66 7999997 78
Q ss_pred eeeccC-----CHHHHHHHhhhc
Q 016603 294 RINLLD-----PKDVIANKIKRC 311 (386)
Q Consensus 294 ~I~L~D-----spe~I~~KI~kA 311 (386)
.|.+.| .++.++==+..+
T Consensus 628 vI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 628 VLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCHHHHHHHcChHHHHHHHHhc
Confidence 887755 455555555544
No 101
>PLN02959 aminoacyl-tRNA ligase
Probab=75.20 E-value=2.3 Score=49.40 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=35.1
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
|-+|+-..|.||...+- +.-+..... .+|. -+-|..++.. ..|. + +| +|||||. ||.
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---GNv 726 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---GNF 726 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHHHHHHH-hcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---CCc
Confidence 56899999999977653 333322211 1222 1223323221 3343 3 67 7999997 788
Q ss_pred eeccC
Q 016603 295 INLLD 299 (386)
Q Consensus 295 I~L~D 299 (386)
|.+.|
T Consensus 727 I~p~d 731 (1084)
T PLN02959 727 LTLRQ 731 (1084)
T ss_pred CCHHH
Confidence 87644
No 102
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=74.64 E-value=4 Score=46.94 Aligned_cols=45 Identities=31% Similarity=0.327 Sum_probs=29.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~--~~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
++.|.+|. -|||.+|+||.++... -+.+++. |++|.+.. -|-|.+
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 35555554 4689999999987552 2445544 88887655 455554
No 103
>PLN02943 aminoacyl-tRNA ligase
Probab=74.15 E-value=2.5 Score=48.46 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=42.2
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCcccccCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~-~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
|-+|+...|.||. .+=++|-++-.... .| +.| . .+++ ..+... +| +|||||. |
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~~-~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIEF-TG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhhh-cC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 4579999999998 45677766643221 12 124 2 3333 344444 56 7999998 7
Q ss_pred CeeeccC-----CHHHHHHHhh
Q 016603 293 SRINLLD-----PKDVIANKIK 309 (386)
Q Consensus 293 s~I~L~D-----spe~I~~KI~ 309 (386)
|.|...| .++.++-=+.
T Consensus 590 N~i~p~~~i~~ygaDalR~~l~ 611 (958)
T PLN02943 590 NVIDPLDTIKEFGTDALRFTLA 611 (958)
T ss_pred CCCCHHHHHHhcCChHHHHHHH
Confidence 8887654 3444544443
No 104
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=73.47 E-value=4.6 Score=45.29 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=41.5
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEEe-ccceec---------C--CCC--H--------HH
Q 016603 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFIV-DLHAIT---------L--PYD--T--------QQ 130 (386)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~Ia-DlhA~t---------~--~~~--~--------~~ 130 (386)
++.+.+| --|||.+||||.++.+.. +.+++ .|++|.+..+ |-|.+- + +.+ . +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 4555553 357899999999875522 44444 3888876554 444431 1 111 1 12
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 016603 131 LSKATRETAAIYLACGID 148 (386)
Q Consensus 131 i~~~~~~~~~~~lA~Gld 148 (386)
..++...+..++.++|+.
T Consensus 119 ~~~~~~~~~~~~~~lg~s 136 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLS 136 (800)
T ss_pred HHHHHHHHHHHHHHhCee
Confidence 333456677888888873
No 105
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=73.37 E-value=2.6 Score=47.57 Aligned_cols=60 Identities=32% Similarity=0.408 Sum_probs=36.6
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCcccccCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~-~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
+-+|+...|.||...+ ++|-++-.... +| +.| . .+++ ..+... +| +|||||. +
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLAL-TG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHHh-cC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---C
Confidence 4689999999997764 44455433221 12 124 2 3333 445554 56 7999998 7
Q ss_pred CeeeccC
Q 016603 293 SRINLLD 299 (386)
Q Consensus 293 s~I~L~D 299 (386)
|.|.+.|
T Consensus 532 N~i~p~~ 538 (861)
T TIGR00422 532 NVIDPLD 538 (861)
T ss_pred CCCCHHH
Confidence 8887654
No 106
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=73.05 E-value=3.1 Score=41.36 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=37.4
Q ss_pred CCCceEE-EeeCCCCcchhhhHHHHH--HHHHH-Hh-ccCcEEE--EEeccceecC------CCCHHH-HHHHHHHHHHH
Q 016603 76 SVKKRIV-SGVQPTGSIHLGNYLGAI--KNWIA-LQ-NSYETLF--FIVDLHAITL------PYDTQQ-LSKATRETAAI 141 (386)
Q Consensus 76 ~~~~~i~-tGi~PTG~lHLGnyl~~i--~~~~~-lQ-~~~~~~i--~IaDlhA~t~------~~~~~~-i~~~~~~~~~~ 141 (386)
+.+.++| .|-=+-..+||||+...+ .-+.+ |+ .|++|.+ =|.|+.--+- ..++.+ .+..++.+.++
T Consensus 6 ~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d 85 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED 85 (300)
T ss_dssp TTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3345555 455555779999987755 11222 33 3777754 4577643221 124433 44456778888
Q ss_pred HHHcCCCCC
Q 016603 142 YLACGIDNS 150 (386)
Q Consensus 142 ~lA~Gldp~ 150 (386)
+.++|+.+.
T Consensus 86 m~~Lnv~~p 94 (300)
T PF01406_consen 86 MKALNVLPP 94 (300)
T ss_dssp HHHTT----
T ss_pred HHHcCCCCC
Confidence 889998764
No 107
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=72.88 E-value=1.9 Score=47.09 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=38.7
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
.+|+.+.|.||..++-+- -+.+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~---wpa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIY---WPIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHH---HHHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 468899999998754421 111111111 3456655542 2332 2 56 7999998 7888
Q ss_pred eccC-----CHHHHHHHhh
Q 016603 296 NLLD-----PKDVIANKIK 309 (386)
Q Consensus 296 ~L~D-----spe~I~~KI~ 309 (386)
+..| ++|.++=-+.
T Consensus 309 ~p~d~l~~ygaD~lR~~L~ 327 (648)
T PRK12267 309 DPEELVDRYGLDALRYYLL 327 (648)
T ss_pred CHHHHHHHcCCcHHHHHHH
Confidence 8654 4444444444
No 108
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.23 E-value=5.2 Score=43.21 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=55.7
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 80 ~i~tGi--~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
+|+|-| +|.|.+||||.-....++=.... ++-|++-.-|- +|. .+-.+.-..+..+...+|++|=| |=.
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDT----NPE--kEee~yf~sI~e~V~WLG~~P~k--vTy 319 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDT----NPE--KEEEEYFESIKEMVAWLGFEPYK--VTY 319 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCC----Ccc--hhhHHHHHHHHHHHHHhCCCcee--eec
Confidence 577777 67799999998542234322222 33455544443 221 22333444455555567999975 556
Q ss_pred cccch-hhhHHHHH-------HhcccCHHHhhhhhch
Q 016603 157 QSHVR-AHVELMWL-------LSSATPIGWLNKMIQF 185 (386)
Q Consensus 157 qS~~~-~~~~l~w~-------l~~~~~v~~L~r~~~~ 185 (386)
.||+. +..+++.. +.|+.+..++.+.-.+
T Consensus 320 sSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~ 356 (764)
T KOG1148|consen 320 SSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGF 356 (764)
T ss_pred chhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCC
Confidence 67764 34444443 4578888887744333
No 109
>PLN02843 isoleucyl-tRNA synthetase
Probab=72.19 E-value=6.2 Score=45.38 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=43.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC--------------CCCHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL--------------PYDTQQLSKATRE 137 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~--------------~~~~~~i~~~~~~ 137 (386)
++.+..|. -+||.+||||.+..+.+ +++++. |+++.+.. -|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 34454554 46899999999876522 334443 78876544 45553321 1134444444432
Q ss_pred --------HHHHHHHcCC--CCCCc
Q 016603 138 --------TAAIYLACGI--DNSKA 152 (386)
Q Consensus 138 --------~~~~~lA~Gl--dp~k~ 152 (386)
...++..+|+ |.++.
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~~ 137 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWENP 137 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCCC
Confidence 3467788898 87763
No 110
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=72.15 E-value=3.5 Score=47.39 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=37.6
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCcccccCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P--~~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
|-+|+...|.||.. +=++|-++..+... | +.| ..+++ .++.+- +| +|||||. |
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~~-~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHLT-D---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHhc-C---------------CCChHHHhcc---ceEECC-CC-CCcccCC---C
Confidence 46899999999876 55666666654321 1 235 23333 456554 67 7999997 7
Q ss_pred Ceeec
Q 016603 293 SRINL 297 (386)
Q Consensus 293 s~I~L 297 (386)
|.|..
T Consensus 592 NvIdP 596 (995)
T PTZ00419 592 NVIDP 596 (995)
T ss_pred CcCCh
Confidence 88853
No 111
>PLN02381 valyl-tRNA synthetase
Probab=71.72 E-value=3 Score=48.39 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=38.7
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCcccccCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P--~~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
|-+|+..-|-||. ++=++|-++..+.. .|. +| ..+++ .+|.+- +| +|||||. |
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~~---------------~PFk~v~~h---G~V~D~-~G-~KMSKS~---G 661 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GGD---------------VPFRKVYLH---PMIRDA-HG-RKMSKSL---G 661 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CCC---------------CchHHheec---ceEECC-CC-CCCCCCC---C
Confidence 5689999999998 55667777655432 121 23 23443 556664 67 6999998 7
Q ss_pred Ceeecc
Q 016603 293 SRINLL 298 (386)
Q Consensus 293 s~I~L~ 298 (386)
|.|...
T Consensus 662 NvIdP~ 667 (1066)
T PLN02381 662 NVIDPL 667 (1066)
T ss_pred CCCCHH
Confidence 888643
No 112
>PLN02286 arginine-tRNA ligase
Probab=71.24 E-value=5.1 Score=43.37 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=43.0
Q ss_pred ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeec
Q 016603 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (386)
Q Consensus 218 divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L 297 (386)
-|-.+|.||..|+.-...+++.++.... .. -..-+++.. .+|-++ +| +||||.. |+.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~-~~-----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE-DT-----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc-cc-----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4567899999999999999999873200 00 001122332 456444 66 6999886 799999
Q ss_pred cCCHHH
Q 016603 298 LDPKDV 303 (386)
Q Consensus 298 ~Dspe~ 303 (386)
.|=-++
T Consensus 390 ~dllde 395 (576)
T PLN02286 390 VDLLDE 395 (576)
T ss_pred HHHHHH
Confidence 874443
No 113
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.82 E-value=24 Score=36.93 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc-cCcEEEEE--eccceec-------CCC-CHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 86 QPTGSIHLGNYLGAI--KNWIALQN-SYETLFFI--VDLHAIT-------LPY-DTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i--~~~~~lQ~-~~~~~i~I--aDlhA~t-------~~~-~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
-+...+||||....+ ..+.++|. ..+.+|+. .|-|.+- +.. .++........+...+++.|+.-.+
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~ 127 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK 127 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh
Confidence 467779999987665 44666777 34455544 6777763 222 4466667778888899999997653
No 114
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=70.44 E-value=1.8 Score=49.49 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=12.9
Q ss_pred hhcccceeecccchhH
Q 016603 213 LLYQSDFVPVGEDQKQ 228 (386)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (386)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 115
>PLN02563 aminoacyl-tRNA ligase
Probab=70.18 E-value=5.7 Score=45.62 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.1
Q ss_pred cccceeecccch-hHHHHHHHHHHHHHh
Q 016603 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (386)
Q Consensus 215 ~~adivpvG~DQ-~~h~elaRdia~k~n 241 (386)
+-+|+-.+|.|| .-|+-.+|-....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 469999999999 578888888876654
No 116
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.54 E-value=4.5 Score=43.82 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=46.1
Q ss_pred ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 218 divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
-|-.+|.||..|+.-.+-+++..+... + ..+++.. -.++...+| .||||-. ++.|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~------------------~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~vt 393 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGP------------------DKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVVT 393 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCC------------------ccceEEEEE-EeeeECCCC-ccccccC---CceEE
Confidence 366799999999999999999987431 2 1222211 223333244 6899997 89999
Q ss_pred ccCCHHHHHHHh
Q 016603 297 LLDPKDVIANKI 308 (386)
Q Consensus 297 L~Dspe~I~~KI 308 (386)
|.|=-+++.+|-
T Consensus 394 l~dllde~~era 405 (577)
T COG0018 394 LDDLLDEAGERA 405 (577)
T ss_pred HHHHHHHHHHHh
Confidence 998766666333
No 117
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.47 E-value=4.9 Score=43.53 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=30.3
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEeccceec
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDLHAIT 123 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDlhA~t 123 (386)
|+.=-|||+||+||...++ .-+.++-+ ||+|+ ..|.||=..+
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~ 170 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQI 170 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHH
Confidence 6778899999999997765 33434333 78874 7899985543
No 118
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=69.03 E-value=7.1 Score=44.20 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=28.9
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
++.|++|. =+||.+|+||.+....+ +.+++. |++|.+..+ |-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 45666654 46899999999875522 444443 788876555 44444
No 119
>PLN02843 isoleucyl-tRNA synthetase
Probab=68.86 E-value=3.3 Score=47.55 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.4
Q ss_pred hhcccceeecccchhH
Q 016603 213 LLYQSDFVPVGEDQKQ 228 (386)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (386)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4466899999999986
No 120
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=67.92 E-value=3.9 Score=46.93 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=32.6
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+-+|+...|.||.... +.+-++...- .+|.. .+..++.. ..+... +| +|||||. ||.
T Consensus 544 ~Pad~~~~G~Di~r~W-f~~l~~~~~~-~~~~~--------------pfk~v~~h--G~Vld~-~G-~KMSKSl---GNv 600 (975)
T PRK06039 544 FPADFIVEGIDQTRGW-FYTLLALSTA-LFDRP--------------PYKNVLVH--GHVLDE-DG-QKMSKSL---GNY 600 (975)
T ss_pred CCceEEEechhhHhhH-HHHHHHHHHH-hcCCC--------------cccEEEEe--eeEECC-CC-CCcCCCC---CCc
Confidence 4689999999997532 2222222111 12211 11222221 344443 66 6999998 788
Q ss_pred eecc
Q 016603 295 INLL 298 (386)
Q Consensus 295 I~L~ 298 (386)
|...
T Consensus 601 IdP~ 604 (975)
T PRK06039 601 VDPF 604 (975)
T ss_pred CCHH
Confidence 8644
No 121
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=66.54 E-value=16 Score=29.24 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.1
Q ss_pred CCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHH
Q 016603 327 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 369 (386)
Q Consensus 327 p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~ 369 (386)
-.+.+++.++. .+.+.+|+.++|.++...|++.++.-+...
T Consensus 31 I~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 31 IPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 33445666555 789999999999999999999999877765
No 122
>PLN02224 methionine-tRNA ligase
Probab=66.36 E-value=8.6 Score=42.02 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
..|+...|.|-.+++.+-= -|--+.. | ++.|..++.. ..+ .+ +| +|||||. +|.|
T Consensus 321 ~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~i 375 (616)
T PLN02224 321 PASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNTL 375 (616)
T ss_pred CcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---CccC
Confidence 5678899999887543322 1111110 1 3457665553 333 34 67 7999998 7888
Q ss_pred eccC-----CHHHHHHHhhh
Q 016603 296 NLLD-----PKDVIANKIKR 310 (386)
Q Consensus 296 ~L~D-----spe~I~~KI~k 310 (386)
...| ++|.++=-+.+
T Consensus 376 ~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 376 EPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CHHHHHHHcCcHHHHHHHHh
Confidence 7654 34444444443
No 123
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=66.30 E-value=3.4 Score=44.16 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=32.7
Q ss_pred ceeecccchhHHHH-HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603 218 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 218 divpvG~DQ~~h~e-laRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
++...|.|+.+++. +---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 47888999976443 22222221110 13456555542 3443 4 66 7999998 78887
Q ss_pred ccC
Q 016603 297 LLD 299 (386)
Q Consensus 297 L~D 299 (386)
..|
T Consensus 345 p~d 347 (556)
T PRK12268 345 VDD 347 (556)
T ss_pred HHH
Confidence 544
No 124
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=65.92 E-value=4 Score=43.34 Aligned_cols=75 Identities=23% Similarity=0.082 Sum_probs=43.2
Q ss_pred ccchhhHHHhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 016603 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (386)
Q Consensus 200 g~l~YP~LQAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~ 278 (386)
|.-+=..-|+...|--.-||.-+|.|-. ||+|- ++|..... +|.. -+...++. .+| ..
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~~--------------~~~~w~h~--g~l-~~- 275 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGKP--------------WVRYWLHH--EFL-LM- 275 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCCC--------------cceEEEEc--CEE-ee-
Confidence 4444445566666655679999999964 56653 44444321 2321 13333332 222 33
Q ss_pred CCCcccccCCCCCCCeeeccC
Q 016603 279 DGLSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~D 299 (386)
+| +|||||. +|.|.+.|
T Consensus 276 ~g-~KMSKSl---GN~itl~d 292 (490)
T PRK14536 276 NK-GKMSKSA---GQFLTLSS 292 (490)
T ss_pred cC-ccccccC---CCcccHHH
Confidence 56 6999998 78888743
No 125
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.47 E-value=4 Score=46.04 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceec
Q 016603 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT 123 (386)
Q Consensus 87 PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~IaDlhA~t 123 (386)
+||.+|+||.+... .-+++++. |++++++-+=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 49999999986532 33444443 899998888778754
No 126
>PLN02882 aminoacyl-tRNA ligase
Probab=65.41 E-value=5.3 Score=46.77 Aligned_cols=59 Identities=27% Similarity=0.336 Sum_probs=35.0
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+-+|+..-|.||.... +.+-++-.... +|. +.|..++.. ..+..= +| +|||||. +|.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~l-~~~--------------~pfk~Vivh--G~vlde-~G-~KMSKSl---GNv 622 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTAL-FDK--------------PAFKNLICN--GLVLAE-DG-KKMSKSL---KNY 622 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHHh-cCC--------------CCcceeEEc--cEEECC-CC-CCcccCC---CCC
Confidence 4499999999999865 44444443321 232 123333331 334331 56 7999998 788
Q ss_pred ee
Q 016603 295 IN 296 (386)
Q Consensus 295 I~ 296 (386)
|.
T Consensus 623 Id 624 (1159)
T PLN02882 623 PD 624 (1159)
T ss_pred CC
Confidence 75
No 127
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=65.26 E-value=8.2 Score=43.80 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=27.1
Q ss_pred ceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 016603 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
+.+.+|. -+||.+|+||.+....+ +.+++. |++|.+.- .|-|.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444433 46899999999875522 344443 78876655 455554
No 128
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=64.41 E-value=3.4 Score=45.38 Aligned_cols=81 Identities=26% Similarity=0.280 Sum_probs=49.3
Q ss_pred hHHHhhhhhhcccceeecccch-hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcc
Q 016603 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (386)
Q Consensus 205 P~LQAADil~~~adivpvG~DQ-~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~K 283 (386)
...|+.|||-...||--+|.|- -||++ -++|..--. ||... + ...+++. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA~-~~~~~-----------~--v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEAY-FDKHQ-----------W--VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHHh-hCCCC-----------C--CcEEEEE--EEE-Ee-cc-ch
Confidence 4689999999999999999998 46654 344443221 34311 1 1122221 222 34 56 69
Q ss_pred cccCCCCCCCeeeccC-----CHHHHHHHhh
Q 016603 284 MSKSAPSDQSRINLLD-----PKDVIANKIK 309 (386)
Q Consensus 284 MSKS~p~~~s~I~L~D-----spe~I~~KI~ 309 (386)
||||. +|.|.+.| +++.++==+.
T Consensus 316 MSKSL---GNfItp~dlLekygaDaLR~~lL 343 (651)
T PTZ00399 316 MSKSL---KNFITIRQALSKYTARQIRLLFL 343 (651)
T ss_pred hhhcC---CCcccHHHHHHHcChHHHHHHHH
Confidence 99998 78988765 4555554443
No 129
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=63.58 E-value=8 Score=39.15 Aligned_cols=73 Identities=26% Similarity=0.212 Sum_probs=43.6
Q ss_pred cceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 217 adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
.-|-.+|.||..|+.-...+++.++..-.. ....+... .++. +.||..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~----------------~~~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPEA----------------VKLQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHHH----------------CTEEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCCC----------------CEEEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 446789999999999999999998842000 11111111 2222 236623799997 78999
Q ss_pred ccCCHHHHHHHhhh
Q 016603 297 LLDPKDVIANKIKR 310 (386)
Q Consensus 297 L~Dspe~I~~KI~k 310 (386)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 86655555444444
No 130
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.36 E-value=5.6 Score=44.73 Aligned_cols=63 Identities=21% Similarity=0.096 Sum_probs=36.5
Q ss_pred ccceeecccchhHHHH-HHHHHHHHHhhhh--CCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCcccccCCCCC
Q 016603 216 QSDFVPVGEDQKQHLE-LTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSD 291 (386)
Q Consensus 216 ~adivpvG~DQ~~h~e-laRdia~k~n~~y--g~~~~~~~g~~~~~~~~~P~~-l~~~~~~~lpgL~dG~~KMSKS~p~~ 291 (386)
-.|+=.+|.|...++- ++| |+++. ....|+ ..+|-. |++. .+|.+- +| +|||||.
T Consensus 526 PVD~yigG~ehavlHLly~r-----F~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK--- 584 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLYFR-----FFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK--- 584 (814)
T ss_pred ChheeecchhHHHHHHHHHH-----HHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---
Confidence 4899999999987554 444 44432 111111 112221 4443 556554 45 6999997
Q ss_pred CCeeeccC
Q 016603 292 QSRINLLD 299 (386)
Q Consensus 292 ~s~I~L~D 299 (386)
+|.|.+.|
T Consensus 585 gN~v~p~~ 592 (814)
T COG0495 585 GNVVDPEE 592 (814)
T ss_pred CCCCCHHH
Confidence 78887654
No 131
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=63.31 E-value=8.3 Score=41.56 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=42.2
Q ss_pred cceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 217 adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
--|-.+|.||..|+.-...+++.++..... .-+++.. .+| .+ +| +||||.. |+.|.
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~---------------~l~h~~~---g~V-~~-~g-~kmStR~---G~~v~ 381 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYTWVD---------------GMEHVPF---GLI-LK-DG-KKMSTRK---GRVVL 381 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCCccc---------------CeEEEee---eeE-ec-CC-CCCcCCC---CCeeE
Confidence 346789999999999999999998742100 0112222 234 34 55 5999997 78999
Q ss_pred ccCCHHH
Q 016603 297 LLDPKDV 303 (386)
Q Consensus 297 L~Dspe~ 303 (386)
|.|=-++
T Consensus 382 l~dLlde 388 (562)
T PRK12451 382 LEEVLEE 388 (562)
T ss_pred HHHHHHH
Confidence 9874333
No 132
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=62.90 E-value=45 Score=34.73 Aligned_cols=74 Identities=24% Similarity=0.221 Sum_probs=42.6
Q ss_pred ccchhhHHHhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 016603 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (386)
Q Consensus 200 g~l~YP~LQAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~ 278 (386)
|.-+=..-|+..+|--.-|+.-+|.|-. +|++- ++|...-. +|... -+...++. . ....
T Consensus 225 GWHiECsam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A~-~g~~~-------------~~~~w~H~--g-~l~~- 284 (411)
T TIGR03447 225 GWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEAA-TGVRR-------------MARHYVHA--G-MIGL- 284 (411)
T ss_pred hhHHHHHHHHHHHcCCceecccCcccccccchHh--HHHHHHHh-cCCCC-------------cceEEEEC--C-EECc-
Confidence 3333345677777666789999999964 55553 34433221 23211 13333332 2 3344
Q ss_pred CCCcccccCCCCCCCeeec
Q 016603 279 DGLSKMSKSAPSDQSRINL 297 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L 297 (386)
+| +|||||. +|.|.+
T Consensus 285 ~G-~KMSKSl---GN~i~~ 299 (411)
T TIGR03447 285 DG-EKMSKSL---GNLVFV 299 (411)
T ss_pred CC-CCccCcC---CCCCCH
Confidence 66 7999998 788876
No 133
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=62.53 E-value=5.7 Score=42.16 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=32.2
Q ss_pred eeecccchhHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeec
Q 016603 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (386)
Q Consensus 219 ivpvG~DQ~~h~elaR-dia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L 297 (386)
+.+.|.|...++-+-- -+..-.+ ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999988643321 1111111 2346555542 3343 3 55 7999997 789976
Q ss_pred cC
Q 016603 298 LD 299 (386)
Q Consensus 298 ~D 299 (386)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 44
No 134
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.27 E-value=4.1 Score=42.86 Aligned_cols=82 Identities=26% Similarity=0.212 Sum_probs=51.6
Q ss_pred ccchhhHHHhhhhhhcccceeecccc-hhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 016603 200 ALLTYPVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (386)
Q Consensus 200 g~l~YP~LQAADil~~~adivpvG~D-Q~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~ 278 (386)
|.=+=...|+.+.|--.-||--||.| +-||+| .|+|+.--. +|.+. | .-.-+++ .+| ..
T Consensus 205 GWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHE--NEiAQsea~-~g~~~-----------~-a~yWmH~---G~l-~i- 264 (464)
T COG0215 205 GWHIECSAMSTKYLGETFDIHGGGSDLIFPHHE--NEIAQSEAA-TGVKP-----------F-AKYWMHN---GFL-NI- 264 (464)
T ss_pred chhHHHHHHHHHHhCCCcceecCcccccCCCcc--cHHHHHHhh-hCCCc-----------c-eeEeEEc---cee-ee-
Confidence 33344567888888888999999999 568887 455554332 24211 0 0011333 333 22
Q ss_pred CCCcccccCCCCCCCeeeccC-----CHHHHH
Q 016603 279 DGLSKMSKSAPSDQSRINLLD-----PKDVIA 305 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~D-----spe~I~ 305 (386)
+| +|||||. +|-|.+.| +|++++
T Consensus 265 ~g-eKMSKSL---GNfiti~d~l~~~~p~~lR 292 (464)
T COG0215 265 DG-EKMSKSL---GNFITVRDLLKKYDPEVLR 292 (464)
T ss_pred cC-cCccccc---CCeeEHHHHHhhcCHHHHH
Confidence 66 7999998 79998876 566655
No 135
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=61.49 E-value=6 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.9
Q ss_pred cccceeecccch-hHHHHHHHHHHHH
Q 016603 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (386)
Q Consensus 215 ~~adivpvG~DQ-~~h~elaRdia~k 239 (386)
+-+|+..+|.|| .-|+-.+|-....
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6777777886533
No 136
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=61.37 E-value=25 Score=32.20 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=39.3
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccch
Q 016603 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (386)
Q Consensus 85 i~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA-~t--~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~ 161 (386)
|+| +|+||.-. +.... +..-+++|.|+.-.. -+ ++.+.++-.+.++.. +...|+|.+++.|.-=.|..
T Consensus 8 F~P---~H~GHl~~-i~~a~--~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~~ 78 (181)
T cd02168 8 FQP---FHNGHLAV-VLIAL--EKAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDHL 78 (181)
T ss_pred cCC---CCHHHHHH-HHHHH--HHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCCC
Confidence 465 89999865 33432 222267777755422 11 234444444444333 33458999987665433431
Q ss_pred hhhHHHHH
Q 016603 162 AHVELMWL 169 (386)
Q Consensus 162 ~~~~l~w~ 169 (386)
+.+..|.
T Consensus 79 -~~~~~W~ 85 (181)
T cd02168 79 -YSDNLWL 85 (181)
T ss_pred -CChHHHH
Confidence 2344463
No 137
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=61.37 E-value=7.8 Score=41.73 Aligned_cols=42 Identities=21% Similarity=0.523 Sum_probs=29.7
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEeccce
Q 016603 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDLHA 121 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDlhA 121 (386)
.=|++-=|+|.+|+||..+++ .-+.++.+ |++|+ ..|.||=.
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR 163 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence 446788899999999988766 33444433 77764 78899743
No 138
>PLN02943 aminoacyl-tRNA ligase
Probab=60.01 E-value=10 Score=43.51 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=28.5
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHH--HHHHHh--ccCcEEEEE-ecccee
Q 016603 78 KKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQ--NSYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnyl~~i~--~~~~lQ--~~~~~~i~I-aDlhA~ 122 (386)
++.+..| =-+||.+|+||.+.... -+.+++ .|++|.+.. .|-|.+
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 3555555 46799999999986542 233443 388887655 455544
No 139
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=59.79 E-value=27 Score=37.16 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=42.2
Q ss_pred CceEEEeeCCC--CcchhhhHHHHH--HHHHHHh--ccCcEEEE--Eecc-----------ceecC-----CCCH-HHHH
Q 016603 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQ--NSYETLFF--IVDL-----------HAITL-----PYDT-QQLS 132 (386)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnyl~~i--~~~~~lQ--~~~~~~i~--IaDl-----------hA~t~-----~~~~-~~i~ 132 (386)
+.++|+ -.|| ..+||||..+.+ .-+.+++ .|++|.+. |.|+ -.++. ..++ +...
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 455553 3555 569999987754 2233332 27888763 5665 11221 1233 3344
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 016603 133 KATRETAAIYLACGIDNS 150 (386)
Q Consensus 133 ~~~~~~~~~~lA~Gldp~ 150 (386)
+++..+.+++.++|+.++
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 556677888889998765
No 140
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=59.24 E-value=6.8 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.3
Q ss_pred cccceeecccch-hHHHHHHHHHHH
Q 016603 215 YQSDFVPVGEDQ-KQHLELTRELAE 238 (386)
Q Consensus 215 ~~adivpvG~DQ-~~h~elaRdia~ 238 (386)
|-+|+-+.|.|| .-|+-++|-...
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~ 546 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTK 546 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999 678888886653
No 141
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=59.19 E-value=50 Score=34.04 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=42.2
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHH-HHHHHHHHHHHHH
Q 016603 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQ-LSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~I-aDlhA--~t~-----~~~~~~-i~~~~~~~~~~~l 143 (386)
+.++| +|-=|=+.+||||..+.+ .-+.++++ |++|.++. .|.|. ++. ..++++ .++++..+.+++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555 444444889999987754 22334333 78887644 33331 111 124433 4445677888999
Q ss_pred HcCC-CCC
Q 016603 144 ACGI-DNS 150 (386)
Q Consensus 144 A~Gl-dp~ 150 (386)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 9997 554
No 142
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.14 E-value=6.6 Score=43.11 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=46.1
Q ss_pred CCceEEEee-CCCCcchhhhHHHH-H-HHHHHHhc--cCcEEEEEeccceecCCC---------C-HHHHHHHHHHHHHH
Q 016603 77 VKKRIVSGV-QPTGSIHLGNYLGA-I-KNWIALQN--SYETLFFIVDLHAITLPY---------D-TQQLSKATRETAAI 141 (386)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnyl~~-i-~~~~~lQ~--~~~~~i~IaDlhA~t~~~---------~-~~~i~~~~~~~~~~ 141 (386)
.+.+|++=| -|||.+|+||...- + .-..++|+ |++|+=-+ .|.|+=.|. + ..-..+|+..+..+
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Q 135 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIAKMKQQ 135 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHHHHHHH
Confidence 345888888 79999999996431 1 34455654 77776443 455554331 1 13345567777788
Q ss_pred HHHcCC--CCCC
Q 016603 142 YLACGI--DNSK 151 (386)
Q Consensus 142 ~lA~Gl--dp~k 151 (386)
++..|+ |.|+
T Consensus 136 l~~lg~~FDWdr 147 (876)
T KOG0435|consen 136 LKSLGISFDWDR 147 (876)
T ss_pred HHHcCccccccc
Confidence 888875 5554
No 143
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=56.43 E-value=9.8 Score=41.03 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.0
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDl 119 (386)
|+.-=|||.+|+||...++ .-+.++-+ |++|+ ..|.||
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 5777899999999987765 33444433 78874 788998
No 144
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=55.93 E-value=13 Score=40.36 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=26.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
++.+..|. -+||.+|+||.+..+.+ +++++. |++|.+.. -|-|.+
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 45555554 56899999999886522 334443 78876544 566665
No 145
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=55.09 E-value=7.5 Score=45.08 Aligned_cols=45 Identities=33% Similarity=0.389 Sum_probs=29.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
++.|+.|. -+||.+|+||.++.. .-+.+++. |++|.+.-+ |-|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 45666665 468999999998754 22445554 888876554 44544
No 146
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=54.72 E-value=7 Score=41.44 Aligned_cols=67 Identities=21% Similarity=0.121 Sum_probs=37.0
Q ss_pred Hhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCccccc
Q 016603 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (386)
Q Consensus 208 QAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSK 286 (386)
|+...|--.-||..+|.|-. ||+|-=+-.+.... |.. .+...++. .++ .+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~---g~~--------------~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYL---NKK--------------WCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhc---CCC--------------cceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444434568999999965 46664333332221 321 13333332 222 33 56 69999
Q ss_pred CCCCCCCeeeccC
Q 016603 287 SAPSDQSRINLLD 299 (386)
Q Consensus 287 S~p~~~s~I~L~D 299 (386)
|. +|.|.+.|
T Consensus 283 Sl---GN~i~l~d 292 (481)
T PRK14534 283 SN---NNFITIKD 292 (481)
T ss_pred cC---CCcccHHH
Confidence 98 78888843
No 147
>PLN02286 arginine-tRNA ligase
Probab=54.68 E-value=8.8 Score=41.52 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=27.6
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDl 119 (386)
|+.-=|||.+|+||..+++ .-+.++-+ |++|+ ..|.||
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 5788899999999987655 23333333 78874 788998
No 148
>PLN02381 valyl-tRNA synthetase
Probab=52.41 E-value=9.4 Score=44.39 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=29.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~--~~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
++.|.+|. -+||.+|+||.+.... -+.+++. |++|.+..+ |-|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 45666665 5789999999987542 2444443 888876655 44444
No 149
>PLN02660 pantoate--beta-alanine ligase
Probab=51.81 E-value=59 Score=32.20 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=48.7
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
.++|....|+--.|-+.+.|.+.+.+|. |.-++.- +.+.- .|| =-||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADG-LAMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCC-Ceecccc------
Confidence 3899999999999999999999999883 3333321 33434 367 4788773
Q ss_pred eeccCCHHHHHHHhhhccc
Q 016603 295 INLLDPKDVIANKIKRCKT 313 (386)
Q Consensus 295 I~L~Dspe~I~~KI~kA~T 313 (386)
.||++...+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4677777677777766554
No 150
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=50.90 E-value=21 Score=42.09 Aligned_cols=73 Identities=26% Similarity=0.384 Sum_probs=39.4
Q ss_pred cccchhhHHHhhhhh--hcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-c-cccCCCCccc
Q 016603 199 VALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARV 274 (386)
Q Consensus 199 ~g~l~YP~LQAADil--~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~-~l~~~~~~~l 274 (386)
.+.+-||--...+-+ .+-+|+.+=|.||....-.+- ++...- .+|+ .| . .+.+ ..+
T Consensus 654 ~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~-l~~s~~-l~~~---------------~PfK~VlvH---G~V 713 (1205)
T PTZ00427 654 YAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTL-LVISTL-LFDK---------------APFKNLICN---GLV 713 (1205)
T ss_pred HHHhCCCcccchhhHhccCCceEEEEecchhccHHHHH-HHHHHH-hcCC---------------CCcceeEEc---cEE
Confidence 455556642112222 256999999999987553222 222221 1332 23 2 2333 345
Q ss_pred ccCCCCCcccccCCCCCCCeee
Q 016603 275 MSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 275 pgL~dG~~KMSKS~p~~~s~I~ 296 (386)
..- +| +|||||. ||.|.
T Consensus 714 ld~-dG-~KMSKSl---GNvID 730 (1205)
T PTZ00427 714 LAS-DG-KKMSKRL---KNYPD 730 (1205)
T ss_pred EcC-CC-CCcccCC---CCCCC
Confidence 443 67 7999997 78774
No 151
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=49.99 E-value=72 Score=27.39 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=45.5
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 016603 84 GVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (386)
Q Consensus 84 Gi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~ 159 (386)
-+.=||++..-|.+-+ |.+|.|-++++++-..==. ..-....+++.....+.+...|++|+++.+++=|-
T Consensus 33 rvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 3444678776665543 5678888887766421110 01235566777777788889999999998876543
No 152
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=49.23 E-value=19 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=23.3
Q ss_pred cchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHH
Q 016603 329 CNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 364 (386)
Q Consensus 329 v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La 364 (386)
+..++..+ -.+.+.+||.++|..+...+++.+|+
T Consensus 21 v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 21 VRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp HHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 33444444 37899999999999999999999886
No 153
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=48.90 E-value=11 Score=43.16 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------------CCCHHHHHHH----
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------------PYDTQQLSKA---- 134 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~t~-------------~~~~~~i~~~---- 134 (386)
++.+..|. -+||.+|+||.+..+.+ +.+++. |++|.+..+ |-|.+-. ..+++++++.
T Consensus 50 ~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~ 129 (912)
T PRK05743 50 KFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY 129 (912)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 34555554 46899999999876522 445554 788765444 4444421 0133433332
Q ss_pred ----HHHHHHHHHHcCC--CCCC
Q 016603 135 ----TRETAAIYLACGI--DNSK 151 (386)
Q Consensus 135 ----~~~~~~~~lA~Gl--dp~k 151 (386)
...+..++..+|+ |.++
T Consensus 130 ~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 130 ALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHHhCCcccCCC
Confidence 2345677888898 7775
No 154
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=47.96 E-value=11 Score=42.54 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 016603 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
.++.++.|. -|||.+|+||.+..+.+ +.+++. |++|.+..+ |-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 356777777 35699999999875522 445554 788766543 55544
No 155
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.90 E-value=23 Score=40.60 Aligned_cols=63 Identities=27% Similarity=0.355 Sum_probs=36.1
Q ss_pred cceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 217 adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P--~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+|+..=|.||..=.=.+--+..-.- +|. .| ..|.+ .++..- +| +|||||. +|+
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~--~~~---------------aPYk~vltH---GfvlDe-~G-rKMSKSl---GN~ 610 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTAL--FGR---------------APYKNVLTH---GFVLDE-KG-RKMSKSL---GNV 610 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHH--cCC---------------chHHHHhhc---ccEECC-CC-CCccccC---CCc
Confidence 5999999999653322222221111 121 12 22333 455554 56 7999998 788
Q ss_pred eeccCCHHHHHHHh
Q 016603 295 INLLDPKDVIANKI 308 (386)
Q Consensus 295 I~L~Dspe~I~~KI 308 (386)
|. |++|.+|.
T Consensus 611 v~----P~~V~~~y 620 (933)
T COG0060 611 VD----PQDVIDKY 620 (933)
T ss_pred CC----HHHHHHhh
Confidence 74 77777664
No 156
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=47.46 E-value=95 Score=27.75 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=32.5
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe-ccceec--CCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 016603 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV-DLHAIT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (386)
Q Consensus 85 i~PTG~lHLGnyl~~i~~~~~lQ~~~~-~~i~Ia-DlhA~t--~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~ 160 (386)
|+| +|+||.-. ++...+. ++ ++++|+ +..... ++.+.++-.+.++. .+...|+|-+++.++-..+.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 466 99999864 3344222 34 555563 333332 23343332222222 22333677777777655444
No 157
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=45.72 E-value=8.7 Score=38.87 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=25.0
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEeccce
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDLHA 121 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDlhA 121 (386)
|+.-=|||++|+||...++ .-+.++-+ |++|+ ..|.||=.
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 5777899999999987765 23334333 77764 78999843
No 158
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=45.37 E-value=1.2e+02 Score=33.86 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=43.6
Q ss_pred CCCCCceEEE-eeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccc--eecC-----CCCHH-HHHHHHHHHH
Q 016603 74 SSSVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLH--AITL-----PYDTQ-QLSKATRETA 139 (386)
Q Consensus 74 ~~~~~~~i~t-Gi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~I-aDlh--A~t~-----~~~~~-~i~~~~~~~~ 139 (386)
..+.+.++|+ |.=+=+.+||||....+ .-+.++.+ |++|.++. .|.| +++. ..++. ..+.++..+.
T Consensus 244 ~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~ 323 (699)
T PRK14535 244 IDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMH 323 (699)
T ss_pred CCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344556653 43333779999987754 22333332 78887654 2222 1111 12443 3445567788
Q ss_pred HHHHHcCCCCC
Q 016603 140 AIYLACGIDNS 150 (386)
Q Consensus 140 ~~~lA~Gldp~ 150 (386)
+++.++|+.+.
T Consensus 324 ~d~~~LnI~~p 334 (699)
T PRK14535 324 EDADALGVLRP 334 (699)
T ss_pred HHHHHcCCCCC
Confidence 88889998765
No 159
>PLN02959 aminoacyl-tRNA ligase
Probab=44.93 E-value=27 Score=40.71 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE
Q 016603 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI 116 (386)
Q Consensus 87 PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I 116 (386)
++|.+||||.+....+ ..++|. |++|.+..
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4799999999876533 445555 67766543
No 160
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=44.37 E-value=11 Score=43.22 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=24.7
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI 116 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I 116 (386)
++.+..|. -+||.+|+||.++.... +.++|. |++|.+..
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~ 69 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPL 69 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCC
Confidence 44555554 46799999999875422 445554 77776644
No 161
>PLN02610 probable methionyl-tRNA synthetase
Probab=43.59 E-value=6.7 Score=44.15 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=20.2
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~ 298 (386)
++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 330 ~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 330 WTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred cCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 4467666552 233 23 67 6999998 7888754
No 162
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=43.31 E-value=5.1 Score=41.21 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=17.4
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeec
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L 297 (386)
++.|..++.. ..+. + +| +|||||. ++.|+.
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 4567766553 2333 4 67 6999998 688875
No 163
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=42.22 E-value=9.5 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=20.5
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D 299 (386)
++.|..++.. ..+. + +| +|||||. +|.|...|
T Consensus 311 ~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV~p~d 342 (673)
T PRK00133 311 YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFIWART 342 (673)
T ss_pred CCCCCEEeee--ccEE-e-cC-CcccccC---CcccCHHH
Confidence 4457665542 3343 3 66 6999998 78887543
No 164
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.00 E-value=30 Score=39.21 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=14.3
Q ss_pred cccccCCCCCcccccCCCCCCCeee
Q 016603 272 ARVMSLTDGLSKMSKSAPSDQSRIN 296 (386)
Q Consensus 272 ~~lpgL~dG~~KMSKS~p~~~s~I~ 296 (386)
++|..- .| .|||||. +|.|.
T Consensus 584 ~mVRDa-~G-RKMSKSL---GNVID 603 (995)
T KOG0432|consen 584 GLVRDA-HG-RKMSKSL---GNVID 603 (995)
T ss_pred hhhccc-cc-cccchhh---ccccC
Confidence 456664 56 7999998 67774
No 165
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=39.04 E-value=19 Score=41.45 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=28.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
++.+..|. -++|.+|+||.+..+.+ +++++. |+++.+..+ |-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35555665 46799999999876522 444544 788765443 55544
No 166
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=35.73 E-value=2.6e+02 Score=28.03 Aligned_cols=73 Identities=25% Similarity=0.107 Sum_probs=40.0
Q ss_pred chhhHHHhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 016603 202 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (386)
Q Consensus 202 l~YP~LQAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG 280 (386)
=+=...|+...|-..-||--||.|-. ||+|=-+-.++-.. |+.. .-.-+++ .+|. + +|
T Consensus 192 HiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~-------------a~~W~H~---g~l~-~-~g 250 (300)
T PF01406_consen 192 HIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPF-------------ANYWMHN---GHLN-V-DG 250 (300)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-S-------------EEEEEEE-----EE-E-TT
T ss_pred eeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchH-------------HHHHHHH---HHHh-h-cC
Confidence 33445677777777899999999975 78875555555443 3211 0011333 2332 2 56
Q ss_pred CcccccCCCCCCCeeeccC
Q 016603 281 LSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 281 ~~KMSKS~p~~~s~I~L~D 299 (386)
+|||||. +|.|.+.|
T Consensus 251 -~KMSKSl---gN~~~i~d 265 (300)
T PF01406_consen 251 -EKMSKSL---GNFITIRD 265 (300)
T ss_dssp -CE--TTT---T---BHHH
T ss_pred -ccccccC---CCEEEHHH
Confidence 7999998 78888743
No 167
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=34.80 E-value=26 Score=41.32 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=28.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~I-aDlhA~ 122 (386)
++.++.|- =+||.+|+||.+....+ +.+++ .|++|.+.- -|-|.+
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 35556665 46799999999875422 34444 388887644 455555
No 168
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=33.07 E-value=26 Score=40.33 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~ 122 (386)
++.++.|. =+||.+|+||.+....+ +.+++. |++|.+..+ |-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 46667666 46899999999875422 334443 788766443 55554
No 169
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.72 E-value=17 Score=41.23 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=14.6
Q ss_pred cccccCCCCCcccccCCCCCCCeeec
Q 016603 272 ARVMSLTDGLSKMSKSAPSDQSRINL 297 (386)
Q Consensus 272 ~~lpgL~dG~~KMSKS~p~~~s~I~L 297 (386)
..+-+= +| +|||||. ||.|..
T Consensus 516 GLVrDe-~G-~KMSKS~---GNvIDP 536 (877)
T COG0525 516 GLVRDE-QG-RKMSKSK---GNVIDP 536 (877)
T ss_pred eeEEcC-CC-CCCcccC---CCcCCH
Confidence 345453 66 7999998 788853
No 170
>PLN02882 aminoacyl-tRNA ligase
Probab=30.67 E-value=34 Score=40.30 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=29.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
++.++.|- -+||.+|+||.+....+ +.+++. |++|.+.. -|-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 35666664 46799999999875522 444543 88886544 466655
No 171
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=29.73 E-value=18 Score=40.06 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=25.5
Q ss_pred ccchhhHHHhhhhhhcccceeecccch-hHHHHHHHHHHHH
Q 016603 200 ALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 239 (386)
Q Consensus 200 g~l~YP~LQAADil~~~adivpvG~DQ-~~h~elaRdia~k 239 (386)
|.-+=...|+...|--.-||--||.|- -||+|= ++|..
T Consensus 430 GWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 430 GWHIECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred chHHHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 444445567777666678999999995 467763 55554
No 172
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.12 E-value=42 Score=38.08 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceec
Q 016603 88 TGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT 123 (386)
Q Consensus 88 TG~lHLGnyl~~i--~~~~~lQ~--~~~~~i~IaDlhA~t 123 (386)
||.+||||.++.- .-..+++. |+++.+.-+=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 8999999998743 22333433 777777777788865
No 173
>PLN02413 choline-phosphate cytidylyltransferase
Probab=28.76 E-value=1.5e+02 Score=29.54 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCceEEEeeCCCCc---chhhhHHHHHHHHHHH
Q 016603 67 PTAPVASSSSVKKRIVSGVQPTGS---IHLGNYLGAIKNWIAL 106 (386)
Q Consensus 67 ~~~~~~~~~~~~~~i~tGi~PTG~---lHLGnyl~~i~~~~~l 106 (386)
+.++.++...++.+||+- |. +|.||.-. +++..++
T Consensus 16 ~~~~~~~~~~r~~rVyvd----G~FDLfH~GHir~-L~qAK~l 53 (294)
T PLN02413 16 SATPSSSPSDRPVRVYAD----GIYDLFHFGHARS-LEQAKKL 53 (294)
T ss_pred cCCCCCCCCCCceEEEEe----CchhhCCHHHHHH-HHHHHHh
Confidence 344555566677788864 53 99999864 5555443
No 174
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=27.08 E-value=2.7e+02 Score=27.51 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=47.9
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
.++|....|+--.|-+.+.|.+.+.+|. |.-++.- +.+.. .|| =-||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLFL--------------------DIEIVPV--PIVRE-EDG-LALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcCC--------------------CceEEEe--CceEC-CCC-Cchhhcc------
Confidence 3899999999999999999999999882 3333321 23333 366 4788773
Q ss_pred eeccCCHHHHHHHhhhccc
Q 016603 295 INLLDPKDVIANKIKRCKT 313 (386)
Q Consensus 295 I~L~Dspe~I~~KI~kA~T 313 (386)
.||+....+....|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4676666666666666554
No 175
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=26.19 E-value=3.2e+02 Score=30.27 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=41.5
Q ss_pred CCCceEEEeeCCC--CcchhhhHHHHH--HHHHH-Hh--ccCcEEEEE--eccce-ecC-----CCC-H-HHHHHHHHHH
Q 016603 76 SVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQ--NSYETLFFI--VDLHA-ITL-----PYD-T-QQLSKATRET 138 (386)
Q Consensus 76 ~~~~~i~tGi~PT--G~lHLGnyl~~i--~~~~~-lQ--~~~~~~i~I--aDlhA-~t~-----~~~-~-~~i~~~~~~~ 138 (386)
+.++++|+ -.|| +.+||||....+ .-+.+ |+ .|++|+++. .|.-- ++. ..+ + +..+.++..+
T Consensus 58 ~~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f 136 (651)
T PTZ00399 58 GRQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEF 136 (651)
T ss_pred CCeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34445442 2366 679999976644 22333 34 278887654 22211 111 123 4 3344556778
Q ss_pred HHHHHHcCCCCCC
Q 016603 139 AAIYLACGIDNSK 151 (386)
Q Consensus 139 ~~~~lA~Gldp~k 151 (386)
..++.++|+.+..
T Consensus 137 ~~d~~~Lni~~p~ 149 (651)
T PTZ00399 137 FEDMKALNVRPPD 149 (651)
T ss_pred HHHHHHcCCCCCc
Confidence 8889999987653
No 176
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=46 Score=33.73 Aligned_cols=27 Identities=41% Similarity=0.748 Sum_probs=20.0
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEeccc
Q 016603 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (386)
Q Consensus 88 TG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlh 120 (386)
.|+.||||| ++.++ ..+.|+|-|+|+.
T Consensus 62 cGD~HLgN~-ga~~~-----~~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAARN-----SKGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhcc-----CCCceEEEecccc
Confidence 478999998 44322 2578999999974
No 177
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=30 Score=37.44 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=18.7
Q ss_pred CCCcccccCCCCCCCeeeccC-----CHHHHHHHhhh
Q 016603 279 DGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKR 310 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~k 310 (386)
+| +|||||. ++.|+..+ ++|.++=-+.+
T Consensus 330 ~G-~KmSKSr---G~~V~~~~~~~~~~~D~lRYyL~~ 362 (558)
T COG0143 330 EG-QKMSKSR---GNVVDPDELLEQYGVDALRYYLAR 362 (558)
T ss_pred CC-ccccccC---CcEEeHHHHHHHcCchHhHHHHHH
Confidence 56 6999998 78898655 44444444444
No 178
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.80 E-value=47 Score=35.52 Aligned_cols=85 Identities=25% Similarity=0.151 Sum_probs=50.8
Q ss_pred cccchhhHHHhhhhhhcccceeecccchh-HHH--HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccc
Q 016603 199 VALLTYPVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (386)
Q Consensus 199 ~g~l~YP~LQAADil~~~adivpvG~DQ~-~h~--elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lp 275 (386)
.|.=+=...||+|+|-.+-||--||.|=. ||+ |+|.--|.--+..+ +-..|++.. |-
T Consensus 241 PGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~w-----------------VnYflHtGh---L~ 300 (586)
T KOG2007|consen 241 PGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQW-----------------VNYFLHTGH---LT 300 (586)
T ss_pred CCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCcc-----------------ceeEEEcCe---ee
Confidence 34455567899999999999999999975 455 44443333211110 011244421 11
Q ss_pred cCCCCCcccccCCCCCCCeeeccC-----CHHHHHHHhh
Q 016603 276 SLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIK 309 (386)
Q Consensus 276 gL~dG~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~ 309 (386)
. +| .|||||. +|.|-+-+ +|.+.+--.+
T Consensus 301 -i-~g-~KMSKSL---kNFiTIke~Lk~~sp~qLRl~fl 333 (586)
T KOG2007|consen 301 -I-NG-EKMSKSL---KNFITIKEALKKYSPRQLRLAFL 333 (586)
T ss_pred -e-cc-chhhhhh---ccceeHHHHHHhcCHHHHHHHHH
Confidence 1 45 7999998 68998754 5555544333
No 179
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.85 E-value=3.1e+02 Score=23.97 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=42.3
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEE----EeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 016603 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (386)
Q Consensus 85 i~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~----IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~ 159 (386)
+.=||++..-. -+..|++|.|-+++ ++|-|=..++. ..+++.+...+.+.-+||+|+++..++-|.
T Consensus 35 v~CsGrvn~~f------vl~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 35 VMCSGRVNPEF------VLKALRKGADGVLVAGCKIGECHYISGNY---KAKRRMELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred eeccCccCHHH------HHHHHHcCCCeEEEecccccceeeeccch---HHHHHHHHHHHHHHHhCCCcceEEEEEEeh
Confidence 34467665321 23347888876554 46666666544 344556666667778899999998877664
No 180
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=20.82 E-value=4.2e+02 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=15.5
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe
Q 016603 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV 117 (386)
Q Consensus 85 i~PTG~lHLGnyl~~i~~~~~lQ~~~~-~~i~Ia 117 (386)
|+| +|+||.-. ++... +.++ ++|+|+
T Consensus 9 F~P---~H~GHl~~-i~~a~---~~~d~v~v~i~ 35 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWIL---EEVDELIIGIG 35 (174)
T ss_pred cCC---CCHHHHHH-HHHHH---HhCCEEEEEec
Confidence 566 99999864 33332 2455 555564
Done!