Query 016603
Match_columns 386
No_of_seqs 176 out of 1299
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 4.6E-83 1.6E-87 642.2 28.9 292 79-384 36-327 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 3.1E-83 1.1E-87 635.2 25.5 297 78-384 6-305 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 1.2E-82 4.1E-87 631.4 27.9 296 76-384 13-310 (346)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2E-78 6.9E-83 598.7 28.9 292 79-384 2-293 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 8E-79 2.7E-83 605.8 24.5 292 78-381 4-309 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 1.1E-76 3.7E-81 584.9 28.0 285 78-384 3-290 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 7E-75 2.4E-79 575.3 28.4 287 79-384 2-295 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 4.7E-74 1.6E-78 572.1 29.4 291 76-384 20-316 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 4.2E-74 1.4E-78 570.3 26.6 287 77-384 11-306 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 2.9E-69 1E-73 543.3 22.2 274 76-382 71-358 (392)
11 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.5E-67 8.4E-72 527.2 26.5 276 76-385 54-360 (373)
12 3a04_A Tryptophanyl-tRNA synth 100.0 3.2E-67 1.1E-71 526.4 22.8 275 76-383 68-361 (372)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 4.9E-67 1.7E-71 521.1 20.7 272 76-385 38-334 (348)
14 2cyc_A Tyrosyl-tRNA synthetase 100.0 6.3E-67 2.1E-71 524.9 20.8 277 77-384 32-364 (375)
15 2cya_A Tyrosyl-tRNA synthetase 100.0 5.6E-66 1.9E-70 516.3 22.2 273 76-384 33-351 (364)
16 3tze_A Tryptophanyl-tRNA synth 100.0 3E-65 1E-69 515.9 22.1 275 76-384 99-395 (406)
17 3hzr_A Tryptophanyl-tRNA synth 100.0 7.8E-65 2.7E-69 510.3 20.8 275 76-384 80-375 (386)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.1E-64 1.4E-68 536.8 25.6 284 76-385 38-352 (690)
19 2cyb_A Tyrosyl-tRNA synthetase 100.0 2.2E-62 7.4E-67 483.3 24.8 265 76-380 30-321 (323)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 6.4E-63 2.2E-67 497.7 20.5 275 76-384 72-372 (393)
21 3foc_A Tryptophanyl-tRNA synth 100.0 4.8E-63 1.6E-67 504.2 18.8 276 76-384 89-439 (451)
22 3i05_A Tryptophanyl-tRNA synth 100.0 3.9E-63 1.3E-67 499.5 16.5 274 76-384 76-375 (395)
23 2zp1_A Tyrosyl-tRNA synthetase 100.0 5.7E-61 1.9E-65 471.6 23.5 258 76-380 26-308 (314)
24 2ip1_A Tryptophanyl-tRNA synth 100.0 1.4E-61 4.9E-66 493.3 19.9 275 76-384 100-401 (432)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 2E-61 7E-66 492.0 17.7 274 76-384 106-408 (437)
26 1r6t_A Tryptophanyl-tRNA synth 100.0 1.1E-60 3.8E-65 492.0 18.9 273 76-383 153-454 (477)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 5.2E-60 1.8E-64 474.5 22.5 269 77-384 34-333 (372)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 5.1E-60 1.7E-64 477.8 21.6 273 76-385 37-348 (394)
29 2yxn_A Tyrosyl-tRNA synthetase 100.0 2.1E-59 7.1E-64 461.9 18.0 263 77-380 32-320 (322)
30 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.4E-57 4.8E-62 463.9 21.6 262 76-383 35-316 (432)
31 2jan_A Tyrosyl-tRNA synthetase 100.0 2.4E-56 8.2E-61 454.1 18.9 265 77-383 31-320 (432)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 1.3E-56 4.4E-61 447.3 16.2 263 77-382 45-341 (356)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.1E-54 3.8E-59 441.6 21.1 263 77-384 31-320 (420)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 2.8E-55 9.5E-60 445.3 16.3 264 77-384 29-319 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 1.4E-54 4.8E-59 437.2 21.1 279 77-385 63-383 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.9E-49 6.5E-54 423.8 23.0 264 70-379 374-669 (690)
37 2ja2_A Glutamyl-tRNA synthetas 99.3 1.2E-11 4.2E-16 127.8 13.2 199 84-311 12-287 (498)
38 1nzj_A Hypothetical protein YA 99.3 3.6E-12 1.2E-16 124.0 7.9 175 84-288 11-233 (298)
39 3afh_A Glutamyl-tRNA synthetas 99.2 1.4E-11 4.8E-16 127.2 9.3 200 79-311 26-285 (488)
40 1j09_A Glutamyl-tRNA synthetas 99.2 1.9E-11 6.6E-16 125.6 8.1 192 86-310 9-272 (468)
41 3al0_C Glutamyl-tRNA(Gln) amid 99.1 3.6E-11 1.2E-15 126.8 4.8 201 78-311 129-389 (592)
42 2cfo_A Glutamyl-tRNA synthetas 99.1 6E-09 2E-13 107.7 19.4 195 83-311 6-277 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.8 5.4E-08 1.8E-12 100.4 14.9 200 79-311 14-292 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.7 2.3E-07 7.8E-12 95.7 16.9 199 78-311 25-294 (490)
45 4gri_A Glutamate--tRNA ligase; 98.5 1.8E-06 6.2E-11 89.6 16.3 193 84-310 30-302 (512)
46 3aii_A Glutamyl-tRNA synthetas 98.3 5.2E-06 1.8E-10 86.6 14.6 175 81-288 97-334 (553)
47 1qtq_A GLNRS, protein (glutami 98.0 3.4E-05 1.2E-09 80.5 12.9 94 79-180 27-130 (553)
48 2hz7_A Glutaminyl-tRNA synthet 98.0 5.9E-05 2E-09 82.1 13.5 94 80-180 68-170 (851)
49 2csx_A Methionyl-tRNA syntheta 97.5 0.00028 9.5E-09 72.4 10.3 78 80-159 7-99 (497)
50 4dlp_A Aminoacyl-tRNA syntheta 97.5 0.00079 2.7E-08 69.8 12.8 79 79-159 26-119 (536)
51 2d5b_A Methionyl-tRNA syntheta 97.5 0.00083 2.8E-08 68.8 12.5 78 80-159 5-97 (500)
52 1iq0_A Arginyl-tRNA synthetase 97.0 0.00058 2E-08 71.9 5.6 40 80-119 107-152 (592)
53 2zue_A Arginyl-tRNA synthetase 96.2 0.0049 1.7E-07 65.4 6.2 38 82-119 125-168 (629)
54 3tqo_A Cysteinyl-tRNA syntheta 96.2 0.012 4.2E-07 60.1 8.7 74 78-151 25-112 (462)
55 1irx_A Lysyl-tRNA synthetase; 94.8 0.043 1.5E-06 56.7 7.1 79 78-159 21-129 (523)
56 3u1f_A Methionyl-tRNA syntheta 94.7 0.15 5E-06 52.6 10.8 75 77-151 9-97 (542)
57 1f7u_A Arginyl-tRNA synthetase 94.5 0.086 2.9E-06 55.6 8.7 38 82-119 149-192 (607)
58 3h99_A Methionyl-tRNA syntheta 93.5 0.33 1.1E-05 50.3 10.5 79 78-158 19-111 (560)
59 3kfl_A Methionyl-tRNA syntheta 92.5 0.71 2.4E-05 48.0 11.4 84 73-158 22-119 (564)
60 1rqg_A Methionyl-tRNA syntheta 91.6 0.64 2.2E-05 49.9 10.0 74 78-151 3-91 (722)
61 2x1l_A Methionyl-tRNA syntheta 89.6 0.97 3.3E-05 46.2 8.9 72 86-159 22-106 (524)
62 1li5_A Cysrs, cysteinyl-tRNA s 88.4 1.3 4.6E-05 44.8 8.7 81 78-160 22-117 (461)
63 3u1f_A Methionyl-tRNA syntheta 87.6 0.22 7.7E-06 51.1 2.5 56 216-299 278-336 (542)
64 2x1l_A Methionyl-tRNA syntheta 87.1 0.18 6E-06 51.8 1.3 60 215-299 264-323 (524)
65 3kfl_A Methionyl-tRNA syntheta 85.8 0.24 8.3E-06 51.5 1.6 57 215-299 293-352 (564)
66 3fnr_A Arginyl-tRNA synthetase 85.2 0.19 6.6E-06 51.3 0.4 39 82-120 36-80 (464)
67 1wkb_A Leucyl-tRNA synthetase; 84.6 0.39 1.3E-05 52.1 2.5 71 215-309 602-678 (810)
68 4arc_A Leucine--tRNA ligase; l 84.2 2.9 9.9E-05 45.9 9.1 73 78-150 54-140 (880)
69 3c8z_A Cysteinyl-tRNA syntheta 82.8 0.41 1.4E-05 47.8 1.7 81 78-160 39-134 (414)
70 3c8z_A Cysteinyl-tRNA syntheta 82.8 4.1 0.00014 40.6 8.9 66 209-298 237-303 (414)
71 1wz2_A Leucyl-tRNA synthetase; 82.3 0.53 1.8E-05 52.2 2.4 71 215-309 602-678 (967)
72 3sp1_A Cysteinyl-tRNA syntheta 81.7 6.6 0.00023 40.4 10.2 74 78-151 42-139 (501)
73 1ffy_A Isoleucyl-tRNA syntheta 81.6 0.66 2.2E-05 51.2 2.9 59 214-299 546-608 (917)
74 1li5_A Cysrs, cysteinyl-tRNA s 80.8 0.85 2.9E-05 46.3 3.2 78 208-310 212-295 (461)
75 1ile_A Ilers, isoleucyl-tRNA s 79.8 0.81 2.8E-05 49.7 2.8 73 215-310 543-620 (821)
76 3h99_A Methionyl-tRNA syntheta 79.1 0.7 2.4E-05 47.8 1.9 29 279-311 342-375 (560)
77 1gax_A Valrs, valyl-tRNA synth 78.7 3.4 0.00012 45.2 7.3 73 78-150 35-137 (862)
78 1gax_A Valrs, valyl-tRNA synth 78.1 0.76 2.6E-05 50.4 1.9 61 215-299 480-541 (862)
79 3sp1_A Cysteinyl-tRNA syntheta 74.9 1.4 4.7E-05 45.4 2.7 65 208-297 245-310 (501)
80 2v0c_A Aminoacyl-tRNA syntheta 72.2 5.4 0.00019 43.7 6.7 73 78-150 34-120 (878)
81 2v0c_A Aminoacyl-tRNA syntheta 70.4 2.5 8.6E-05 46.4 3.6 25 215-239 530-555 (878)
82 1wkb_A Leucyl-tRNA synthetase; 69.7 5.1 0.00017 43.3 5.8 45 78-122 35-85 (810)
83 1irx_A Lysyl-tRNA synthetase; 69.1 1.6 5.3E-05 45.0 1.5 72 214-310 228-308 (523)
84 4arc_A Leucine--tRNA ligase; l 68.9 3.4 0.00011 45.4 4.1 26 215-240 542-568 (880)
85 3fnr_A Arginyl-tRNA synthetase 61.3 4.9 0.00017 40.8 3.4 73 200-299 215-298 (464)
86 1ile_A Ilers, isoleucyl-tRNA s 58.1 4.5 0.00015 43.9 2.6 45 78-122 39-89 (821)
87 3oqi_A YVMC, putative uncharac 55.1 41 0.0014 31.5 8.3 81 78-162 29-122 (257)
88 1ffy_A Isoleucyl-tRNA syntheta 51.3 5.4 0.00019 43.9 1.9 74 78-151 49-150 (917)
89 1wz2_A Leucyl-tRNA synthetase; 48.5 6 0.0002 43.8 1.7 39 77-115 34-77 (967)
90 1rqg_A Methionyl-tRNA syntheta 40.9 5.2 0.00018 42.8 -0.3 44 260-311 326-374 (722)
91 3foc_A Tryptophanyl-tRNA synth 40.0 6.7 0.00023 39.8 0.3 13 220-232 237-249 (451)
92 3oqv_A ALBC; rossman fold, cyc 37.9 55 0.0019 30.4 6.2 84 77-162 28-124 (247)
93 2ga1_A Protein of unknown func 30.6 51 0.0018 26.6 4.1 41 326-368 51-91 (106)
94 4erh_A Outer membrane protein 26.2 2E+02 0.0068 23.6 7.4 57 98-154 39-100 (148)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.6e-83 Score=642.22 Aligned_cols=292 Identities=48% Similarity=0.763 Sum_probs=270.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS 158 (386)
.+||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+||
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS 115 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS 115 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHH
Q 016603 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (386)
Q Consensus 159 ~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~ 238 (386)
+|++|.+++|+|+|.+++++|+|+++||++.+.. +++++|+|+||+||||||++|++|+||||+||+||+|||||||+
T Consensus 116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~ 193 (388)
T 3prh_A 116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE 193 (388)
T ss_dssp GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCC
Q 016603 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (386)
Q Consensus 239 k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~ 318 (386)
|||+.||. +|.+|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus 194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~ 261 (388)
T 3prh_A 194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI 261 (388)
T ss_dssp HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence 99999984 488999999876689999988888999999988899999999999999999999999888
Q ss_pred cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 319 i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
++++++++|+++|++.||+.+++++++|++++|.+.+|+|||+.|+++|+++|+|||+||+++++.
T Consensus 262 ~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~ 327 (388)
T 3prh_A 262 VKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIES 327 (388)
T ss_dssp CCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999766999999999999999999999999998753
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.1e-83 Score=635.17 Aligned_cols=297 Identities=42% Similarity=0.712 Sum_probs=278.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
+++||+|++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia 237 (386)
|+|++|.+++|+|+|.+++++|+|+++||++..+.+ +++++|+|+||+||||||++|++|+||||+||+||+|||||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887764 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCC
Q 016603 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (386)
Q Consensus 238 ~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (386)
+|||+.||.. ..+|++|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 0248899999886558999998888899999987789999999999999999999999987
Q ss_pred --CcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHcc-CChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 318 --~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~-l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
.+.++++++|+++|++.||..++++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++.+.
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~ 305 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRND 305 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466788999999999999999999999999999975 8999999999999999999999999999764
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.2e-82 Score=631.43 Aligned_cols=296 Identities=46% Similarity=0.749 Sum_probs=277.8
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
..+++||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||
T Consensus 13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 34679999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHH
Q 016603 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (386)
Q Consensus 156 ~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRd 235 (386)
+||+|++|.+++|+|.|.+++++|+|+++||++..+.+ +++++|+|+||+||||||++|++|+||||+||+||+|||||
T Consensus 93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd 171 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171 (346)
T ss_dssp EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999876654 57899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCC
Q 016603 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (386)
Q Consensus 236 ia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~ 315 (386)
+|+|||+.||. +|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+
T Consensus 172 ia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~ 239 (346)
T 3n9i_A 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDS 239 (346)
T ss_dssp HHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCC
Confidence 99999999984 388999999865689999988988999999866699999999999999999999999
Q ss_pred CCC--cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 316 SAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 316 ~~~--i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
.++ +.++++++|+++|++.||..+++++++|++++|++.++++||+.|+++|+++|+|||+||+++.+.
T Consensus 240 ~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~ 310 (346)
T 3n9i_A 240 DEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYRED 310 (346)
T ss_dssp CSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 863 567888999999999999999999999999999888899999999999999999999999999764
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2e-78 Score=598.72 Aligned_cols=292 Identities=48% Similarity=0.764 Sum_probs=273.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS 158 (386)
++||+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|+.||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHH
Q 016603 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (386)
Q Consensus 159 ~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~ 238 (386)
+|++|.+++|+++|.+++++|+|+++||++.++ + +++++|+|+||+||||||++|++|+||||+||++|++++||+|+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999987754 3 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCC
Q 016603 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (386)
Q Consensus 239 k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~ 318 (386)
|||+.||. +|++|++++++.+++||||++|++|||||.++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 99999983 488999999755589999966568999999632234999999999999999999999988
Q ss_pred cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 319 i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+.+++.++|+++|++.||++++++++++++++|.+++++++|+.||++|+++|+|||++|+++.+.
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 293 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMES 293 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 888887789999999999999999999999999879999999999999999999999999998764
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=8e-79 Score=605.79 Aligned_cols=292 Identities=37% Similarity=0.573 Sum_probs=271.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
+++||+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-----CCCcccccchhhHHHhhhhhhcccceeecccchhHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-----~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~el 232 (386)
|+|++|.+++|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||+||++|+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcc
Q 016603 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (386)
Q Consensus 233 aRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~ 312 (386)
+||+|+|||+.||. +|++|++++++.+++||||++|++|||||+++++++|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 99999999999983 488899999765589999976668999999744459999999999999999999
Q ss_pred cCCCCCcccCCCCCCCcchHHHHHHhcCCCCHH---------HHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 016603 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMAL 381 (386)
Q Consensus 313 Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~e---------el~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~ 381 (386)
||+.+++.+++.++|+++|++.||+++++++++ +++++|.+++|+++|+.||++|+++|+|||+||+++
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~ 309 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI 309 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888988899999999999999999999 999999879999999999999999999999999987
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.1e-76 Score=584.94 Aligned_cols=285 Identities=34% Similarity=0.574 Sum_probs=263.9
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~q 157 (386)
..+||+||+|||.+|||||+|++++|++||+|++++|+||||||+|++.+++++++++++++++|+|+|+||+|+.||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999989999999999999999999999999889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHH
Q 016603 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (386)
Q Consensus 158 S~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia 237 (386)
|+|++|.+++|.++|.+++++|+|+.+||++..+. +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876542 5799999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCC
Q 016603 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (386)
Q Consensus 238 ~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (386)
+|||+.||. +|++|++++....++|||| || +|||||++ |+|+|+|+|++|++||++|+||+.+
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 999999983 4889999886445899999 77 79999985 6999999999999999999999987
Q ss_pred CcccCCCCCCCcchHHHHHHhcC-CCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 318 GLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 318 ~i~~~~~~~p~v~nll~i~~~~~-~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
. .++++|+++++++|+++++ ++++++++++|. +++++++|+.||++|+++|+|||+||+++++.
T Consensus 224 ~---~~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~ 290 (322)
T 3tzl_A 224 L---EDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEK 290 (322)
T ss_dssp T---TSCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred c---cCCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 5 2356799999999999995 567899999994 79999999999999999999999999999764
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=7e-75 Score=575.33 Aligned_cols=287 Identities=45% Similarity=0.708 Sum_probs=257.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
++||+||+|||.+|||||+|++++|++||+ | ++++|+|||+||++++ .+++.+++++++++++|+|+|+||+|+.|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 5 9999999999999997 78999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHH
Q 016603 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (386)
Q Consensus 155 ~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaR 234 (386)
|+||+|++|.+++|.++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||+||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999986543 36799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccC
Q 016603 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (386)
Q Consensus 235 dia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td 314 (386)
|+|+|||+.||. +|++|+++++..+++|||| ||++|||||.+ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999983 4788999998655799999 67779999985 5999999999999999999999
Q ss_pred CCCCcccCCCCCCCcchHHHHHHhcCCC-CHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 315 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 315 ~~~~i~~~~~~~p~v~nll~i~~~~~~~-~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+.+++++++ ++|+++++++||++|++. ++++++++|. +++++++|+.||++|+++|+|+|++|+++.+.
T Consensus 224 ~~~~~~~~~-~~p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~ 295 (337)
T 2el7_A 224 PQRIRLSDP-GDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKD 295 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccccCC-CCCchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 988888765 459999999999999987 8999999995 79999999999999999999999999998763
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=4.7e-74 Score=572.09 Aligned_cols=291 Identities=30% Similarity=0.426 Sum_probs=265.9
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
+.+++||+||+|||.+|||||+|++++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|+.|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5678999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHH
Q 016603 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (386)
Q Consensus 155 ~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~ela 233 (386)
|+||+|++|.++.|.++|.+++++|+|+.+||++..+.+ .+++++|+|+||+||||||++|++|+||||+||++|++++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999876553 3678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhccc
Q 016603 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (386)
Q Consensus 234 Rdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~T 313 (386)
||+|+|||+.||. +|++|+++++.. ++|||| ||++|||||.+ |+|+|+|+|++|++||++|+|
T Consensus 180 rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 9999999999873 378899887633 899999 88779999985 599999999999999999999
Q ss_pred CCCCCcccCCCCCCCcchHHHHHHhcC-C-CCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 314 DSSAGLEFDNLERPECNNLLSIYQLIS-G-KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 314 d~~~~i~~~~~~~p~v~nll~i~~~~~-~-~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
|+.+.+.+++ +++++++++.++++++ + +++++++++|. +++|+++|+.||++|+++|+|+|+||+++.+.
T Consensus 243 d~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 316 (351)
T 1yi8_B 243 DPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERD 316 (351)
T ss_dssp CTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 9987777665 5567777888888876 3 34689999995 58999999999999999999999999998764
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-74 Score=570.27 Aligned_cols=287 Identities=36% Similarity=0.550 Sum_probs=261.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
+.+++|+|++|||.||||||+|++++|++||+ |++++|+||||||+|+ +.|++++++++++++++|+|+|+||+|+.|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 35799999999999999999999999999998 6999999999999998 778889999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhcccCHHHhhhhhchHH---HHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHH
Q 016603 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (386)
Q Consensus 155 ~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~---~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~e 231 (386)
|+||+|++|.++.|.++|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||+||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhc
Q 016603 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (386)
Q Consensus 232 laRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA 311 (386)
++||+|+|||+.||. +|++|++++... ++|||| +|+ |||||.+ |+|+|+|||++|++||++|
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 999999999999873 488899877543 899999 685 9999985 6899999999999999999
Q ss_pred ccCCCCCcccCCCCCCCcchHHHHHHhcCC--CCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 312 KTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 312 ~Td~~~~i~~~~~~~p~v~nll~i~~~~~~--~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
+||+.+.+.+++ ++|+++|+++||++|++ +++++++++|. .++++++|+.||++|+++|+|||+||+++.+.
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 306 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDED 306 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999988777765 88999999999999985 34599999995 57999999999999999999999999998764
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-69 Score=543.34 Aligned_cols=274 Identities=20% Similarity=0.284 Sum_probs=233.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~-~-~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++++|+|++|||.+|||||++++ .+| ||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4578999999999999999999986 678 786 7889999999999987 3 6999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc-ccceeecccchhHH
Q 016603 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (386)
Q Consensus 151 k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~-~adivpvG~DQ~~h 229 (386)
|+.||+||+|+++.++.|.+++.+++++++++.+|+ +++++|+|+||+||||||+++ ++|+||||.||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999998876653 578999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhh
Q 016603 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (386)
Q Consensus 230 ~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (386)
+++|||+|+||| +++|+++++ ++||||+++++|||||+| +|+|+|+|+|++|++|||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~ 277 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVW 277 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHH
Confidence 999999999998 345888876 689999544469999996 579999999999999999
Q ss_pred h-cccCCCCCcccC--CCCCCCcchHHHHHHhcC---CCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHH
Q 016603 310 R-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMAL 381 (386)
Q Consensus 310 k-A~Td~~~~i~~~--~~~~p~v~nll~i~~~~~---~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~ 381 (386)
+ |+||+.+++++. .+++|+++++++||.+++ ++++++++++|. +++|++||++||++|+++|+|||+||+++
T Consensus 278 k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~ 357 (392)
T 3jxe_A 278 KFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKA 357 (392)
T ss_dssp TCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999998776653 368999999999999875 457899999994 58999999999999999999999999998
Q ss_pred h
Q 016603 382 Q 382 (386)
Q Consensus 382 ~ 382 (386)
+
T Consensus 358 ~ 358 (392)
T 3jxe_A 358 E 358 (392)
T ss_dssp T
T ss_pred H
Confidence 6
No 11
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.5e-67 Score=527.24 Aligned_cols=276 Identities=20% Similarity=0.236 Sum_probs=238.3
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
.++++||+||+|||.+||||.+....+|++||+ ||+++|+||||||++++ .+++++++++++++++|+|+|+||+|
T Consensus 54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k 133 (373)
T 3vgj_A 54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN 133 (373)
T ss_dssp CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence 346899999999999999996543346889998 89999999999999973 58999999999999999999999999
Q ss_pred cEEEEcccch-hhhHHHHHHhc----ccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 016603 152 ASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (386)
Q Consensus 152 ~~i~~qS~~~-~~~~l~w~l~~----~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ 226 (386)
+.||+||+|+ +|.+++|.+.+ .++++|+.++.+++.+. ..+++++|+|+||+||||||++|++|+||||.||
T Consensus 134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ 210 (373)
T 3vgj_A 134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQ 210 (373)
T ss_dssp EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence 9999999998 89999998765 57999998888876432 2257899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 227 ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
++|++++||+|+|||+.|+ |..+.. ++||||+||++|||||+| +|+|+|+|+|++|++
T Consensus 211 ~~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~ 268 (373)
T 3vgj_A 211 RKVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNR 268 (373)
T ss_dssp HHHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHH
Confidence 9999999999999997543 444554 679999899889999986 589999999999999
Q ss_pred HhhhcccCCCCCcccCCCCCCCcchHHHHHH--------hc------------CCCCHHHHHHHHc--cCChhhHHHHHH
Q 016603 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQ--------LI------------SGKTKGEVAEECQ--NMNWGTFKPLLT 364 (386)
Q Consensus 307 KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~--------~~------------~~~~~eel~~~~~--~l~~~dlK~~La 364 (386)
|||+|+||+.. ++.++++.|++ .| +++++++++++|. ++||+|||++||
T Consensus 269 KI~kA~td~~~---------~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~la 339 (373)
T 3vgj_A 269 KIKKAYCPPNV---------IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVA 339 (373)
T ss_dssp HHHHSCCCTTC---------CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHhCcCCCCC---------CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999742 23344444432 22 2468999999994 689999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcc
Q 016603 365 DALIEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 365 e~I~~~L~pir~r~~~~~~~~ 385 (386)
++|+++|+|||++|++..+||
T Consensus 340 e~i~~~l~Pire~~~~~~~~~ 360 (373)
T 3vgj_A 340 MYINKLLQPVRDHFQNNIEAK 360 (373)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhChhHH
Confidence 999999999999999988886
No 12
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=3.2e-67 Score=526.42 Aligned_cols=275 Identities=27% Similarity=0.365 Sum_probs=241.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCc
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA 152 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~Gldp~k~ 152 (386)
.++++||||++|||.+|||||++++ +|+.+|+ +++++|+||||||+|++. +++.+++++++++++|+|+||||+|+
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt 146 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT 146 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence 4588999999999999999999864 6777875 899999999999999854 56779999999999999999999999
Q ss_pred EEEEcccc-hhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhh--------cccceeecc
Q 016603 153 SVFVQSHV-RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG 223 (386)
Q Consensus 153 ~i~~qS~~-~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~--------~~adivpvG 223 (386)
.||+||++ .++.++.|.+++.+++++++++.+ ..+.|.++||+||||||++ |++++||||
T Consensus 147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG 215 (372)
T 3a04_A 147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG 215 (372)
T ss_dssp EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred chhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence 99999984 679999999999999998876632 3578999999999999999 455699999
Q ss_pred cchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHH
Q 016603 224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303 (386)
Q Consensus 224 ~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~ 303 (386)
+||+||+|||||||+|||+.|+ ++.|..++. +++||| || .|||||+| +|+|+|+|+|++
T Consensus 216 ~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~ 274 (372)
T 3a04_A 216 ADQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEV 274 (372)
T ss_dssp GGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHH
T ss_pred hhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHH
Confidence 9999999999999999998775 567888887 579999 77 69999986 699999999999
Q ss_pred HHHHhhhcccCCCCCccc--CCCCCCCcchHHHH--HHhc-CCCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhHHHHH
Q 016603 304 IANKIKRCKTDSSAGLEF--DNLERPECNNLLSI--YQLI-SGKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLHPIQS 376 (386)
Q Consensus 304 I~~KI~kA~Td~~~~i~~--~~~~~p~v~nll~i--~~~~-~~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~pir~ 376 (386)
|++|||+|+||+..+++. ..+++|++++++++ |.++ +++++++++++| |+++|+|||+.|++.|+++|+|+|+
T Consensus 275 i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~re 354 (372)
T 3a04_A 275 ARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQS 354 (372)
T ss_dssp HHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877654 34678898888875 3333 446789999999 5799999999999999999999999
Q ss_pred HHHHHhh
Q 016603 377 WQMALQK 383 (386)
Q Consensus 377 r~~~~~~ 383 (386)
||++..+
T Consensus 355 r~e~~~~ 361 (372)
T 3a04_A 355 RLEKAKT 361 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHhHH
Confidence 9998765
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=4.9e-67 Score=521.13 Aligned_cols=272 Identities=19% Similarity=0.236 Sum_probs=227.5
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
..++++|+|++|||.+|||||++.+.+|++||+ ||+++++|||+||++++. +++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 117 (348)
T 2j5b_A 38 GRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG 117 (348)
T ss_dssp TCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 347899999999999999999888999999998 799999999999999853 8999999999999999999999999
Q ss_pred cEEEEcccc-hhhhHHHHHHhc----ccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc---ccceeecc
Q 016603 152 ASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVG 223 (386)
Q Consensus 152 ~~i~~qS~~-~~~~~l~w~l~~----~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~---~adivpvG 223 (386)
+.||+||+| ++|. ++|.+.+ .+++++|.+..+++.+. ..+++++|+|+||+||||||++| ++|+||||
T Consensus 118 ~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G 193 (348)
T 2j5b_A 118 TRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLG 193 (348)
T ss_dssp EEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCB
T ss_pred eEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEec
Confidence 999999998 5666 8999775 78888888777776432 22568999999999999999999 99999999
Q ss_pred cchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHH
Q 016603 224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303 (386)
Q Consensus 224 ~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~ 303 (386)
.||++|++++||+|+|||+.| |..+.. ++||||+||++|||||.| +|+|+|+|+|++
T Consensus 194 ~DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~ 250 (348)
T 2j5b_A 194 IDQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQE 250 (348)
T ss_dssp GGGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHH
T ss_pred cChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHH
Confidence 999999999999999999542 555444 789999888889999986 589999999999
Q ss_pred HHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHh-------------cCCCCHHHHHHHHccCChhhHHHHHHHHHHHh
Q 016603 304 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL-------------ISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 304 I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~-------------~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~ 370 (386)
|++|||+|+||+.. ++ ++++.|+.. ++++++++++++|.+++|+++|++||++|+++
T Consensus 251 i~kKI~ka~td~~~---------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~ 320 (348)
T 2j5b_A 251 VSEKISRAYCTDET---------FD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTI 320 (348)
T ss_dssp HHHHHHHSCCCSSS---------TT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCC---------CC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 99999999999742 34 456666654 34678999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcc
Q 016603 371 LHPIQSWQMALQKLQ 385 (386)
Q Consensus 371 L~pir~r~~~~~~~~ 385 (386)
|+|||++|++. +|+
T Consensus 321 l~pir~~~~~~-~~~ 334 (348)
T 2j5b_A 321 IDLVREHFKKP-ELS 334 (348)
T ss_dssp HHHHHHHTTSG-GGH
T ss_pred HHHHHHHHHhh-hhH
Confidence 99999999876 554
No 14
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-67 Score=524.93 Aligned_cols=277 Identities=21% Similarity=0.273 Sum_probs=242.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHH-HHHH----HHHHHcCC
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~-~~~~----~~~lA~Gl 147 (386)
.++++|+||+|||.+|||||++++.+|++||+ |++++|+||||||++++ .+++++++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999998 69999999999999985 3899999999 8898 99999999
Q ss_pred CCCCcEEEEcccchhhhHHHHHH----hcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecc
Q 016603 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (386)
Q Consensus 148 dp~k~~i~~qS~~~~~~~l~w~l----~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG 223 (386)
||+|+.||+||+|++|. ++|.+ ++.+++++|.|+.+||.+. ..+++++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999988 88997 8999999999999998643 2256899999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhh---hh-CCccccccCCCCCccccCCccccCCCCcccccCCCC----------------Ccc
Q 016603 224 EDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (386)
Q Consensus 224 ~DQ~~h~elaRdia~k~n~---~y-g~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG----------------~~K 283 (386)
.||++|++++||+|+|||+ .| |. .| +|..+.. ++||||++| ++|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~------------~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGE------------KL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTE------------EE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCcccccccc------------cC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 9999999999999999997 12 21 01 4555554 789999543 489
Q ss_pred cccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcC---------------------CC
Q 016603 284 MSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GK 342 (386)
Q Consensus 284 MSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~---------------------~~ 342 (386)
||||.| +|+|+|+|+|++|++||++|+||+. .++.++++.|+++|+ ++
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~ 320 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYT 320 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEES
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChh
Confidence 999987 5899999999999999999999974 334567788887664 45
Q ss_pred CHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 343 TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 343 ~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
++++++++|. .++++++|++||++|+++|+|+|++|++..+|
T Consensus 321 ~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~~~ 364 (375)
T 2cyc_A 321 TFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEP 364 (375)
T ss_dssp SHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhH
Confidence 7999999995 38999999999999999999999999976554
No 15
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=5.6e-66 Score=516.33 Aligned_cols=273 Identities=21% Similarity=0.290 Sum_probs=235.8
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
..++++|+||+|||.+|||| ++++.+|++||+ |++++|+||||||++++ .+++.+++++++++++|+|+|+||+|
T Consensus 33 ~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k 111 (364)
T 2cya_A 33 GARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER 111 (364)
T ss_dssp CSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 34789999999999999999 777899999998 79999999999999985 68999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHH----HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchh
Q 016603 152 ASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (386)
Q Consensus 152 ~~i~~qS~~~~~~~l~w~----l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~ 227 (386)
+.||+||+|+++ .++|. ++|.+++++|+|+.+|+.+.. ++.++++|+|+||+||||||++|++|+||||.||+
T Consensus 112 ~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~ 188 (364)
T 2cya_A 112 VRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQR 188 (364)
T ss_dssp CEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred eEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHH
Confidence 999999999987 67787 999999999999999987543 22458899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCcccccCCCCCC
Q 016603 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQ 292 (386)
Q Consensus 228 ~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~d---------------G~~KMSKS~p~~~ 292 (386)
+|++++||+|+|||+ ++|..++. ++||||++ |.+|||||++ +
T Consensus 189 ~~~~l~rdla~r~~~------------------~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~ 245 (364)
T 2cya_A 189 KAHMLARDVAEKLGR------------------KKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--E 245 (364)
T ss_dssp HHHHHHHHHHTTTTC------------------CCCEEEEE---CCCBCSSCC----------------CBCCSSSG--G
T ss_pred HHHHHHHHHHHHcCC------------------CCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--C
Confidence 999999999999983 24766665 68999954 3689999986 5
Q ss_pred CeeeccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcC---------------------CCCHHHHHHHH
Q 016603 293 SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTKGEVAEEC 351 (386)
Q Consensus 293 s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~---------------------~~~~eel~~~~ 351 (386)
|+|+|+|+|++|++||++|+||+.+ ++.++++.|+++|+ ++++++++++|
T Consensus 246 ~~I~L~d~p~~i~~Ki~~a~td~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~ 316 (364)
T 2cya_A 246 TAVFVVDSDDDIRRKIRKAYCPAKQ---------VQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDY 316 (364)
T ss_dssp GSCBTTCCHHHHHHHHHTSCCCTTC---------CTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHH
T ss_pred CEeeccCCHHHHHHHHHhCcCCCCC---------CCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHH
Confidence 9999999999999999999999753 34566888887654 24899999999
Q ss_pred c--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 352 Q--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 352 ~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
. .++++++|++||++|+++|+|+|++|++..+|
T Consensus 317 ~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~~~~ 351 (364)
T 2cya_A 317 TDGRLHPLDLKNAVAESLIEVVRPIRGAVLGDPAM 351 (364)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 5 48999999999999999999999999965443
No 16
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3e-65 Score=515.91 Aligned_cols=275 Identities=17% Similarity=0.197 Sum_probs=241.7
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGnyl~~-i~~~~~lQ~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++++|+|++||| .+|||||+++ +.+| ||+ ++.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 45789999999999 7999999998 4777 887 6788999999999875 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhh--------hcccceee
Q 016603 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (386)
Q Consensus 151 k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil--------~~~adivp 221 (386)
|+.||.||+|++ .+..++.+|.|+++|+++.++.+ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999986 23456778999999999988876 46789999999999999955 46799999
Q ss_pred cccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-cccccCCCCCCCeeeccCC
Q 016603 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (386)
Q Consensus 222 vG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~-~KMSKS~p~~~s~I~L~Ds 300 (386)
||.||++|+++|||+|+||| +++|..++. ++|||| ||. +|||||.| +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999998 446777765 789999 675 69999986 699999999
Q ss_pred HHHHHHHhhh-cccCCCCCccc--CCCCCCCcchHHHHHHhcC--CCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhHH
Q 016603 301 KDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLHP 373 (386)
Q Consensus 301 pe~I~~KI~k-A~Td~~~~i~~--~~~~~p~v~nll~i~~~~~--~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~p 373 (386)
|++|++|||+ |+||+..++++ +++++|+++|+++||++|+ ++++++++++| ++++|++||+.||++|+++|+|
T Consensus 305 p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~p 384 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSR 384 (406)
T ss_dssp HHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999888776 4678999999999999986 46789999999 4689999999999999999999
Q ss_pred HHHHHHHHhhc
Q 016603 374 IQSWQMALQKL 384 (386)
Q Consensus 374 ir~r~~~~~~~ 384 (386)
||+||+++.+.
T Consensus 385 irer~~~~~~d 395 (406)
T 3tze_A 385 YQESRKRVTDD 395 (406)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 17
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=7.8e-65 Score=510.25 Aligned_cols=275 Identities=15% Similarity=0.191 Sum_probs=241.8
Q ss_pred CCCceEEEeeCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~-i~~~~~lQ~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
.+++++|+||+|||.+|||||+++ +.+| ||+ ++.++|+|+|+||++.+ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 457899999999999999999998 5778 887 57788999999999984 79999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhh--------hcc-cceee
Q 016603 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVP 221 (386)
Q Consensus 152 ~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil--------~~~-adivp 221 (386)
+.||+||+|++ .|..++.+|.|+++|+++.++++ .+++++|+|+||+|||||++ .++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999986 34566788999999999988776 46799999999999999877 355 99999
Q ss_pred cccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCH
Q 016603 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (386)
Q Consensus 222 vG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dsp 301 (386)
||+||+||+++|||+|+|||+ ++|..+.. ++|||| +|.+|||||++ +|+|+|+|+|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~------------------~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p 285 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNF------------------IQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNA 285 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTC------------------CCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcCC------------------CCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCH
Confidence 999999999999999999983 35755543 789999 67569999986 6999999999
Q ss_pred HHHHHHhhh-cccCCCCCccc--CCCCCCCcchHHHHHHhcC--CCCHHHHHHHH--ccCChhhHHHHHHHHHHHhhHHH
Q 016603 302 DVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEEC--QNMNWGTFKPLLTDALIEHLHPI 374 (386)
Q Consensus 302 e~I~~KI~k-A~Td~~~~i~~--~~~~~p~v~nll~i~~~~~--~~~~eel~~~~--~~l~~~dlK~~Lae~I~~~L~pi 374 (386)
++|++|||+ |+||+..+.+. ..+++|+++++++||.+++ ++++++++++| |+++|++||+.||++|+++|+||
T Consensus 286 ~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pi 365 (386)
T 3hzr_A 286 KQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAY 365 (386)
T ss_dssp HHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999766432 3567899999999999885 45789999999 46899999999999999999999
Q ss_pred HHHHHHHhhc
Q 016603 375 QSWQMALQKL 384 (386)
Q Consensus 375 r~r~~~~~~~ 384 (386)
|+||+++.+.
T Consensus 366 rer~~~~~~~ 375 (386)
T 3hzr_A 366 DAKKKPITTA 375 (386)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.1e-64 Score=536.78 Aligned_cols=284 Identities=20% Similarity=0.305 Sum_probs=242.6
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~Gldp~k 151 (386)
.++++||+||+|||.+||||++....+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 117 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence 357899999999999999997654346888998 78999999999999973 58899999999999999999999999
Q ss_pred cEEEEccc-chhhhHHHHHHhc----ccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 016603 152 ASVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (386)
Q Consensus 152 ~~i~~qS~-~~~~~~l~w~l~~----~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ 226 (386)
++||+||+ +++|.+++|.+.+ .+++++|.++.+++.+. . +++++|+|+||+||||||++|++|+||||.||
T Consensus 118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~---~-~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ 193 (690)
T 3p0j_A 118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT---E-GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ 193 (690)
T ss_dssp EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc---c-CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence 99999999 4789999998754 79999999999988543 2 24899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 227 ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
++|+++|||+|+|||+.|+ |..+.. ++||||+||++|||||.+ +|+|+|+|+|++|++
T Consensus 194 ~~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~k 251 (690)
T 3p0j_A 194 RKVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVAR 251 (690)
T ss_dssp HHHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHH
Confidence 9999999999999996542 444443 689999889889999986 589999999999999
Q ss_pred HhhhcccCCCCCc--ccCCCCC----CCcchHHHHHHhc--------------CCCCHHHHHHHHc--cCChhhHHHHHH
Q 016603 307 KIKRCKTDSSAGL--EFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWGTFKPLLT 364 (386)
Q Consensus 307 KI~kA~Td~~~~i--~~~~~~~----p~v~nll~i~~~~--------------~~~~~eel~~~~~--~l~~~dlK~~La 364 (386)
|||+|+||+.... +..+++. ++++++++|+.++ +++++++++++|. +++|+|||+.|+
T Consensus 252 KI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~la 331 (690)
T 3p0j_A 252 KIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLI 331 (690)
T ss_dssp HHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999987521 2223333 5789999999976 3468999999994 589999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcc
Q 016603 365 DALIEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 365 e~I~~~L~pir~r~~~~~~~~ 385 (386)
++|+++|+|||+||+++.+|+
T Consensus 332 e~i~~~L~Pirer~~~~~~~~ 352 (690)
T 3p0j_A 332 DEVNALLEPVRQHFASNEEAH 352 (690)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhH
Confidence 999999999999999988775
No 19
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.2e-62 Score=483.29 Aligned_cols=265 Identities=24% Similarity=0.328 Sum_probs=235.2
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~ 153 (386)
.+++++|+|++|||.+||||+ +++.+|++||+ |++++|+||||||++++. +++++++++++++++|+|+|+||+|+.
T Consensus 30 ~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~ 108 (323)
T 2cyb_A 30 KEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK 108 (323)
T ss_dssp CSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 446899999999999999986 56889999998 899999999999999865 899999999999999999999999999
Q ss_pred EEEcccch---hhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHH
Q 016603 154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (386)
Q Consensus 154 i~~qS~~~---~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~ 230 (386)
||+||+|+ ++.++.|.++|.+++++|.|+.+++. +. . +..++|+|+||+|||||++++++|+||||.||++|+
T Consensus 109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~-~-~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~ 184 (323)
T 2cyb_A 109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RR-K-EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH 184 (323)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SC-S-SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--cc-c-CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence 99999996 78999999999999999999876542 11 1 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhh
Q 016603 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (386)
Q Consensus 231 elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k 310 (386)
+++|++|++||+ +.|..++. ++||+| +| +||||| + +|+|+|+|+|++|++||++
T Consensus 185 ~l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~ 238 (323)
T 2cyb_A 185 MLARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRK 238 (323)
T ss_dssp HHHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHh
Confidence 999999999984 24666665 679999 67 799999 3 6999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCcchHHHHHHhc--------------------CCCCHHHHHHHHc--cCChhhHHHHHHHHHH
Q 016603 311 CKTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALI 368 (386)
Q Consensus 311 A~Td~~~~i~~~~~~~p~v~nll~i~~~~--------------------~~~~~eel~~~~~--~l~~~dlK~~Lae~I~ 368 (386)
|+||+. .++.+++++|++.+ +++++++++++|. +++|+|||++||++|+
T Consensus 239 a~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~ 309 (323)
T 2cyb_A 239 AYCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLN 309 (323)
T ss_dssp SCCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999974 33457889888876 3458999999995 4899999999999999
Q ss_pred HhhHHHHHHHHH
Q 016603 369 EHLHPIQSWQMA 380 (386)
Q Consensus 369 ~~L~pir~r~~~ 380 (386)
++|+|||++|++
T Consensus 310 ~~l~pir~~~~~ 321 (323)
T 2cyb_A 310 MLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999976
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=6.4e-63 Score=497.65 Aligned_cols=275 Identities=20% Similarity=0.262 Sum_probs=228.7
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCC
Q 016603 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN 149 (386)
Q Consensus 76 ~~~~~i~tGi~PT-G~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~~~~lA~Gldp 149 (386)
.+++++|+|++|| |.||||||++++ .+| ||+ ++.++|+|||+|+++. +.+++++++++++++++|+|+|+||
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp 149 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP 149 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 3478999999999 679999999987 666 888 5678999999999665 4699999999999999999999999
Q ss_pred CCcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhh-------c-c---c
Q 016603 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---S 217 (386)
Q Consensus 150 ~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~-------~-~---a 217 (386)
+|+.||.||+|.+. + ...+.+|.|+.+++++.+..+ .+++++|+|+||+||||||+. + + +
T Consensus 150 ~kt~i~~ns~~~~~---~-----~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~ 221 (393)
T 3hv0_A 150 ELTFIFTNLEYIAE---L-----YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH 221 (393)
T ss_dssp TTEEEEEHHHHHHH---H-----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred cceEEEECCHHHHH---H-----HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence 99999999999752 1 234567888888888887765 467999999999999999963 3 3 4
Q ss_pred ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-cccccCCCCCCCeee
Q 016603 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRIN 296 (386)
Q Consensus 218 divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~-~KMSKS~p~~~s~I~ 296 (386)
|+||||.||++|++++||+|+||| +++|..++. ++|||| ||. +|||||.+ +|+|+
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--nsaI~ 277 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSL-QGSQTKMSASVQ--NSSIF 277 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC----------------CCCCB
T ss_pred eecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCeEe
Confidence 789999999999999999999988 345777665 789999 564 79999986 57999
Q ss_pred ccCCHHHHHHHhhh-cccCCCCCcccC--CCCCCCcchHHHHHHhc--CCCCHHHHHHHH--ccCChhhHHHHHHHHHHH
Q 016603 297 LLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLI--SGKTKGEVAEEC--QNMNWGTFKPLLTDALIE 369 (386)
Q Consensus 297 L~Dspe~I~~KI~k-A~Td~~~~i~~~--~~~~p~v~nll~i~~~~--~~~~~eel~~~~--~~l~~~dlK~~Lae~I~~ 369 (386)
|+|+|++|++|||+ |+||+..+++++ .+++|+++++++||.++ +++++++++++| |+++|++||+.|+++|++
T Consensus 278 L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~ 357 (393)
T 3hv0_A 278 VNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVK 357 (393)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 999998887764 47899999999999988 466899999999 478999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q 016603 370 HLHPIQSWQMALQKL 384 (386)
Q Consensus 370 ~L~pir~r~~~~~~~ 384 (386)
+|+|+|+||+++.+.
T Consensus 358 ~l~pirer~~~~~~d 372 (393)
T 3hv0_A 358 LTKNHQKNREAINDD 372 (393)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 21
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.8e-63 Score=504.25 Aligned_cols=276 Identities=21% Similarity=0.266 Sum_probs=239.2
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCC
Q 016603 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN 149 (386)
Q Consensus 76 ~~~~~i~tGi~PT-G~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~Gldp 149 (386)
++++++|+||+|| |.||||||++++ .+| ||+ ++.++|+|+|+||++.. .+++++++++++++++|+|+||||
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp 166 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP 166 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 3578999999999 789999999987 667 887 56788999999999863 699999999999999999999999
Q ss_pred CCcEEEEcccchh---hhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc-----------
Q 016603 150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY----------- 215 (386)
Q Consensus 150 ~k~~i~~qS~~~~---~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~----------- 215 (386)
+|+.||+||+|++ +.++.|.+++.++++++.+...|+ +++++|+|+||+||||||+.+
T Consensus 167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp 238 (451)
T 3foc_A 167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP 238 (451)
T ss_dssp GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence 9999999999965 567777788888888776665432 568999999999999999843
Q ss_pred -------------------------------ccc-----------------eeecccchhHHHHHHHHHHHHHhhhhCCc
Q 016603 216 -------------------------------QSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGR 247 (386)
Q Consensus 216 -------------------------------~ad-----------------ivpvG~DQ~~h~elaRdia~k~n~~yg~~ 247 (386)
++| +||||+||+||+|+|||+|++||
T Consensus 239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------ 312 (451)
T 3foc_A 239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------ 312 (451)
T ss_dssp CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT------
T ss_pred cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC------
Confidence 333 99999999999999999999998
Q ss_pred cccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhh-cccCCCCCccc--CCC
Q 016603 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNL 324 (386)
Q Consensus 248 ~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k-A~Td~~~~i~~--~~~ 324 (386)
+++|..+.. ++||||+++++|||||.+ +|+|+|+|+|++|++|||+ |+||+..++++ .++
T Consensus 313 ------------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~ 375 (451)
T 3foc_A 313 ------------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFG 375 (451)
T ss_dssp ------------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTC
T ss_pred ------------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCccchhcccCC
Confidence 335766654 789999544479999996 5799999999999999999 99999877664 568
Q ss_pred CCCCcchHHHHHHhcC--CCCHHHHHHHHc--cCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603 325 ERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 325 ~~p~v~nll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~ 384 (386)
++|++++++.||.+|+ ++++++++++|. +++|++||+.|+++|+++|+|||+||+++.+.
T Consensus 376 g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~d 439 (451)
T 3foc_A 376 ADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT 439 (451)
T ss_dssp CCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred CCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999984 557899999994 68999999999999999999999999988763
No 22
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=3.9e-63 Score=499.51 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=211.3
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++++|+|++||| .||||||++++ .+| ||+ ++.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45789999999999 69999999984 666 887 5778899999987765 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhh--------hhhhcc----c
Q 016603 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (386)
Q Consensus 151 k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAA--------Dil~~~----a 217 (386)
|+.||.||+|.+ .| ...+.+|.|+.+|+++.++.+ .+++++|+|+||+|||| ||++++ +
T Consensus 154 kt~i~~ns~~~~----~~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG----CM----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT----TS----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH----HH----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999976 12 144668889999999988776 46799999999999999 677788 9
Q ss_pred ceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-cccccCCCCCCCeee
Q 016603 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRIN 296 (386)
Q Consensus 218 divpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~-~KMSKS~p~~~s~I~ 296 (386)
|+||||.||++|++++||+|+|||+ ++|..+.. ++|||| +|. +||||| + +|+|+
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~------------------~~p~~l~~---~~l~gL-dG~~~KMSKS-~--~~~I~ 280 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGY------------------LKPAVIHS---KFFPGL-SGPKGKMSSS-S--GTAVL 280 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTC------------------CCCEEEEE---CCCCCC-----------------CCB
T ss_pred eEEEeccchHHHHHHHHHHHHHcCC------------------CCceeecc---ccccCC-CCCcccCCCC-C--CCccc
Confidence 9999999999999999999999983 34666654 789999 554 799999 4 79999
Q ss_pred ccCCHHHHHHHhhh-cccCCCCCccc--CCCCCCCcchHHHHHHhc--CCCCHHHHHHHHc--cCChhhHHHHHHHHHHH
Q 016603 297 LLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIE 369 (386)
Q Consensus 297 L~Dspe~I~~KI~k-A~Td~~~~i~~--~~~~~p~v~nll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~Lae~I~~ 369 (386)
|+|+|++|++|||+ |+||+..++++ +++++|+++|+++||+++ +++++++++++|. +++|++||+.|+++|++
T Consensus 281 L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~ 360 (395)
T 3i05_A 281 LTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITA 360 (395)
T ss_dssp TTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 99999877664 678899999999999998 5668999999994 58999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q 016603 370 HLHPIQSWQMALQKL 384 (386)
Q Consensus 370 ~L~pir~r~~~~~~~ 384 (386)
+|+|||+||+++.+.
T Consensus 361 ~l~pirer~~~~~~d 375 (395)
T 3i05_A 361 ITKTHQEKRKLVTDE 375 (395)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988753
No 23
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=5.7e-61 Score=471.59 Aligned_cols=258 Identities=24% Similarity=0.308 Sum_probs=226.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~ 153 (386)
.++++||+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+| +.
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 45789999999999999999 777899999998 79999999999999985 48999999999999999999998 78
Q ss_pred EEEcccchhhhHHHHH----HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHH
Q 016603 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (386)
Q Consensus 154 i~~qS~~~~~~~l~w~----l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h 229 (386)
|++||+|+++ ..+|. ++|.+++++|+|+.+|+.+. . +..++|+|+||+||||||+++++|+||||.||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999765 44555 99999999999999887532 2 23499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhh
Q 016603 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (386)
Q Consensus 230 ~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (386)
++++|++++. +|..+.. ++|||| +|++||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~~----------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLPK----------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSSS----------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcCC----------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 9999998750 2555554 689999 587899999 4 689999999999999999
Q ss_pred hcccCCCCCcccCCCCCCCcchHHHHHHhc-----------------CCCCHHHHHHHHc--cCChhhHHHHHHHHHHHh
Q 016603 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 310 kA~Td~~~~i~~~~~~~p~v~nll~i~~~~-----------------~~~~~eel~~~~~--~l~~~dlK~~Lae~I~~~ 370 (386)
+|+||+.. ++.+++++||+++ ++++++|++++|. +++|+++|++||++|+++
T Consensus 228 ~a~td~~~---------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~ 298 (314)
T 2zp1_A 228 KAYCPAGV---------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKI 298 (314)
T ss_dssp HSCCCTTC---------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCC---------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999753 3467889999876 3458999999994 579999999999999999
Q ss_pred hHHHHHHHHH
Q 016603 371 LHPIQSWQMA 380 (386)
Q Consensus 371 L~pir~r~~~ 380 (386)
|+|+|++|+.
T Consensus 299 l~p~r~~~~~ 308 (314)
T 2zp1_A 299 LEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999999974
No 24
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.4e-61 Score=493.27 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=231.2
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-C-CCHHHHHHHHHHHHHHHHHcCCCC
Q 016603 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDN 149 (386)
Q Consensus 76 ~~~~~i~tGi~PT-G~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~-~-~~~~~i~~~~~~~~~~~lA~Gldp 149 (386)
.+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+||+++ + .+++.+++++++++++|+|+|+||
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp 177 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDP 177 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3478999999999 899999999976 455 886 7889999999999887 3 588999999999999999999999
Q ss_pred CCcEEEEcccch--hhhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------c
Q 016603 150 SKASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (386)
Q Consensus 150 ~k~~i~~qS~~~--~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~-----------~ 215 (386)
+|+.||+||+|+ .+.++.|. ++||++++++.++++ .+++++|+|+||+||||||++ +
T Consensus 178 ~k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~ 248 (432)
T 2ip1_A 178 KNTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDK 248 (432)
T ss_dssp GGEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTT
T ss_pred CceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCC
Confidence 999999999997 56676663 569999999887764 467899999999999999999 5
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
++++||||.||++|++++||+|+||| +++|..++. ++||||+++++|||||.+ +++|
T Consensus 249 ~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI 305 (432)
T 2ip1_A 249 TPCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAI 305 (432)
T ss_dssp CCEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCC
T ss_pred CceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeE
Confidence 79999999999999999999999998 345877665 789999433479999986 4699
Q ss_pred eccCCHHHHHHHhhh-cccCCCCCcccC--CCCCCCcchHHHHHHhc--CCCCHHHHHHHHc--cCChhhHHHHHHHHHH
Q 016603 296 NLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALI 368 (386)
Q Consensus 296 ~L~Dspe~I~~KI~k-A~Td~~~~i~~~--~~~~p~v~nll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~Lae~I~ 368 (386)
+|+|+|++|++||++ |+||+..+.++. .+++|++++++.|+++| +++++++|+++|. +++++++|+.||+.|+
T Consensus 306 ~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~ 385 (432)
T 2ip1_A 306 FMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQ 385 (432)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 999986554432 24788888899999987 4567888999995 4899999999999999
Q ss_pred HhhHHHHHHHHHHhhc
Q 016603 369 EHLHPIQSWQMALQKL 384 (386)
Q Consensus 369 ~~L~pir~r~~~~~~~ 384 (386)
++|+|+|+||+++.+.
T Consensus 386 ~~l~~~rer~~~~~~~ 401 (432)
T 2ip1_A 386 EFVKAFQERRAQVDEE 401 (432)
T ss_dssp HHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988753
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=2e-61 Score=491.98 Aligned_cols=274 Identities=19% Similarity=0.272 Sum_probs=237.8
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PT-G~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+||++++ .+++++++++++++++|+|+|+||+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 183 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4578999999999 899999999976 556 886 88999999999999985 6889999999999999999999999
Q ss_pred CcEEEEcccchh----hhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------
Q 016603 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (386)
Q Consensus 151 k~~i~~qS~~~~----~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~----------- 214 (386)
|+.||.||+|++ +.++.| +++||++++++.++++ .+++++|+|+||+||||||++
T Consensus 184 kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 254 (437)
T 1r6u_A 184 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 254 (437)
T ss_dssp GEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhccccc
Confidence 999999999975 444443 4668999999887765 467899999999999999999
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG-~~KMSKS~p~~~s 293 (386)
+++|+||||.||++|++++||+|+||| +++|..++. ++|||| +| ++|||||.+ ++
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gL-dG~~~KMSKS~~--ns 310 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NS 310 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTSS--SS
T ss_pred CCceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCC-CCCccccCCCCC--CC
Confidence 778999999999999999999999998 345877665 789999 55 379999986 56
Q ss_pred eeeccCCHHHHHHHhhh-cccCCCCCcccCC--CCCCCcchHHHHHHhcC--CCCHHHHHHHHc--cCChhhHHHHHHHH
Q 016603 294 RINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDA 366 (386)
Q Consensus 294 ~I~L~Dspe~I~~KI~k-A~Td~~~~i~~~~--~~~p~v~nll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~Lae~ 366 (386)
+|+|+|+|++|++||++ |+||+..++++.+ +++|++++++.|+++|+ ++++++|+++|. +++++++|+.||++
T Consensus 311 aI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~ 390 (437)
T 1r6u_A 311 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEV 390 (437)
T ss_dssp CCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHH
T ss_pred eeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 9999865544422 36888888999999875 456888999995 48999999999999
Q ss_pred HHHhhHHHHHHHHHHhhc
Q 016603 367 LIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 367 I~~~L~pir~r~~~~~~~ 384 (386)
|+++|+|+|+||+++.+.
T Consensus 391 i~~~l~~~rer~~~~~~~ 408 (437)
T 1r6u_A 391 LQPLIAEHQARRKEVTDE 408 (437)
T ss_dssp HHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988753
No 26
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.1e-60 Score=492.04 Aligned_cols=273 Identities=19% Similarity=0.272 Sum_probs=236.2
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 016603 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 76 ~~~~~i~tGi~PT-G~lHLGnyl~~i-~~~~~lQ~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
.+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+||+++ ..+++++++++++++++|+|+|+||+
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 230 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999 899999999987 567 885 8899999999999998 46889999999999999999999999
Q ss_pred CcEEEEcccchh----hhHHHHHHhcccCHHHhhhhhchHHHHHhhC-CCCcccccchhhHHHhhhhhh-----------
Q 016603 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (386)
Q Consensus 151 k~~i~~qS~~~~----~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADil~----------- 214 (386)
|+.||+||+|++ +.++.| +|+|+++++++.++++ .+++++|+|+||+||||||++
T Consensus 231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 301 (477)
T 1r6t_A 231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 301 (477)
T ss_dssp SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence 999999999975 455544 5668888888877664 467899999999999999999
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG-~~KMSKS~p~~~s 293 (386)
+++|+||||.||++|++++||+|+||| +++|..++. ++|||| || ++|||||.+ ++
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gL-dG~~~KMSKS~~--ns 357 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NS 357 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTST--TC
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCC-CCCccccCCCCC--CC
Confidence 578999999999999999999999998 345877665 789999 55 379999986 46
Q ss_pred eeeccCCHHHHHHHhhh-cccCCCCCcccC--CCCCCCcchHHHHHHhcC--CCCHHHHHHHHc--cCChhhHHHHHHHH
Q 016603 294 RINLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDA 366 (386)
Q Consensus 294 ~I~L~Dspe~I~~KI~k-A~Td~~~~i~~~--~~~~p~v~nll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~Lae~ 366 (386)
+|+|+|+|++|++||++ |+||+..++++. .+++|++++++.|+++|+ ++++++|+++|. +++++++|+.||++
T Consensus 358 aI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~ 437 (477)
T 1r6t_A 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEV 437 (477)
T ss_dssp CCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred ceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999 999986554432 237888888999999885 456888999995 48999999999999
Q ss_pred HHHhhHHHHHHHHHHhh
Q 016603 367 LIEHLHPIQSWQMALQK 383 (386)
Q Consensus 367 I~~~L~pir~r~~~~~~ 383 (386)
|+++|+|||+||+++.+
T Consensus 438 i~~~l~pirer~~~~~~ 454 (477)
T 1r6t_A 438 LQPLIAEHQARRKEVTD 454 (477)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=5.2e-60 Score=474.47 Aligned_cols=269 Identities=23% Similarity=0.208 Sum_probs=220.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~---~--~~~~~lA~Gldp~ 150 (386)
++++||+||+|||.+|||||+++++.|..+|.|++++|+|+||||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999998888767789999999999999997 667666654442 2 3345799999999
Q ss_pred CcEEEEcccch---hhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchh
Q 016603 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (386)
Q Consensus 151 k~~i~~qS~~~---~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~ 227 (386)
|+.||+||+|+ ++.++.|.++|.++++++++..+ .+. +. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v~-~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EVV-KQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TTS-CC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hhh-cc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 78888999999999999888632 011 11 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHH
Q 016603 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (386)
Q Consensus 228 ~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (386)
+|++++||++++|+ ++.|..++. ++||+| || +|||||.+ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999986 335777776 679999 67 69999986 4699999999999999
Q ss_pred hhhcccCCCCCcccCCCCCCCcchHHHHHHh--------c------------CCCCHHHHHHHHc--cCChhhHHHHHHH
Q 016603 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 365 (386)
Q Consensus 308 I~kA~Td~~~~i~~~~~~~p~v~nll~i~~~--------~------------~~~~~eel~~~~~--~l~~~dlK~~Lae 365 (386)
||+|+||+.+ ++.++++.|++. | +++++++++++|. +++++++|+.||+
T Consensus 245 i~~A~td~~~---------~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~ 315 (372)
T 1n3l_A 245 LKKAFCEPGN---------VENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEV 315 (372)
T ss_dssp HHTCCCCTTC---------CSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHccCCCCC---------CCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999853 233456777663 3 4568999999995 3899999999999
Q ss_pred HHHHhhHHHHHHHHHHhhc
Q 016603 366 ALIEHLHPIQSWQMALQKL 384 (386)
Q Consensus 366 ~I~~~L~pir~r~~~~~~~ 384 (386)
+|+++|+|+|++++ ..+|
T Consensus 316 ~i~~~l~p~r~~~~-~~~~ 333 (372)
T 1n3l_A 316 ALNKLLDPIREKFN-TPAL 333 (372)
T ss_dssp HHHHHHHHHHHHTT-SHHH
T ss_pred HHHHHHhHHHHHhc-CHHH
Confidence 99999999999998 5444
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-60 Score=477.76 Aligned_cols=273 Identities=23% Similarity=0.193 Sum_probs=222.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHHHHcCCCC
Q 016603 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDN 149 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~-~~~~i~~~~----~~~~~~~lA~Gldp 149 (386)
.++++||+||+|||.||||||+++++.|..+|.|++++|+|+||||+|+ +. +.+.++.++ ..+.+.|+|+|+||
T Consensus 37 ~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp 116 (394)
T 2dlc_X 37 KRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI 116 (394)
T ss_dssp CSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3467999999999999999999999999888889999999999999997 43 445556554 34555789999999
Q ss_pred CCcEEEEcccc---hhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 016603 150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (386)
Q Consensus 150 ~k~~i~~qS~~---~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ 226 (386)
+++.||+||+| .++.++.|.++|.+++++++|+.+.+ .+ . .+++++|+|+||+||||||+++++|+||||.||
T Consensus 117 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ 192 (394)
T 2dlc_X 117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQ 192 (394)
T ss_dssp TTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred hHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccH
Confidence 99999999999 56788999999999999999876421 11 2 256899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHH
Q 016603 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (386)
Q Consensus 227 ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (386)
++|++++|+++++|| ++.|..++. ++||+| +|.+|||||++ +++|+|+|+|++|++
T Consensus 193 ~~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~k 248 (394)
T 2dlc_X 193 RKIFVLAEENLPSLG------------------YKKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKK 248 (394)
T ss_dssp HHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcC------------------CCCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHH
Confidence 999999999999998 335877776 679999 63379999986 467999999999999
Q ss_pred HhhhcccCCCCCcccCCCCCCCcchHHHH----------------------------HHhcCCCCHHHHHHHHc--cCCh
Q 016603 307 KIKRCKTDSSAGLEFDNLERPECNNLLSI----------------------------YQLISGKTKGEVAEECQ--NMNW 356 (386)
Q Consensus 307 KI~kA~Td~~~~i~~~~~~~p~v~nll~i----------------------------~~~~~~~~~eel~~~~~--~l~~ 356 (386)
|||+|+||+.+ ++.++++.| +..++++++++|+++|. .+++
T Consensus 249 KI~ka~Td~~~---------~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~ 319 (394)
T 2dlc_X 249 KINSAFCSPGN---------VEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSP 319 (394)
T ss_dssp HHHHSCCCTTC---------CSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCH
T ss_pred HHHHhcCCCCC---------CCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCH
Confidence 99999999853 223344444 33445679999999995 3899
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 016603 357 GTFKPLLTDALIEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 357 ~dlK~~Lae~I~~~L~pir~r~~~~~~~~ 385 (386)
++||++||++|+++|+|+|+++++..+|+
T Consensus 320 ~~~K~~La~~i~~~l~p~r~~~~~~~~~~ 348 (394)
T 2dlc_X 320 PDLKIGVADAINELLEPIRQEFANNKEFQ 348 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHCCHHHH
Confidence 99999999999999999999998766654
No 29
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=2.1e-59 Score=461.93 Aligned_cols=263 Identities=14% Similarity=0.159 Sum_probs=229.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHH---HHHHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~---~~~~~~ 141 (386)
++++||+||+|||. +|||||++ +.+|++||+ |++++++|||+||+|+ |. +++++++++ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 689999998 7999999999999998 43 899999999 788888
Q ss_pred HHHcCCCCCCcEEEEcccchh-hhHHHHH--HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016603 142 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (386)
Q Consensus 142 ~lA~Gldp~k~~i~~qS~~~~-~~~l~w~--l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~--- 215 (386)
|+|+|+||+|+.||.||+|.. +.++.|+ ++|.++++++.++.++|.+... ..+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~-~~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR-EDQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC-TTCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc-CCCCccchhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999976 4777787 8999999999999999876532 12578999999999999999999
Q ss_pred -ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 216 -~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
++|+++||.||+||++++||+|+|||+ + .|..+.. ++|||+ || +|||||.+ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 999999999999999999999999994 1 2444444 679999 78 69999985 69
Q ss_pred eeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHHHHHHHHHh
Q 016603 295 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 370 (386)
Q Consensus 295 I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~Lae~I~~~ 370 (386)
|+|+| +|+++++||+++. ++++.+++.+|..++++++++++++|. +.+++++|+.||++|+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~ 310 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRL 310 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999973 234566777776667788999999995 459999999999999999
Q ss_pred hHHHHHHHHH
Q 016603 371 LHPIQSWQMA 380 (386)
Q Consensus 371 L~pir~r~~~ 380 (386)
|+|.++..+.
T Consensus 311 l~~~~~~~~a 320 (322)
T 2yxn_A 311 VHGEEGLQAA 320 (322)
T ss_dssp HHHHHHHHHT
T ss_pred hCCHHHHHHh
Confidence 9999988764
No 30
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.4e-57 Score=463.94 Aligned_cols=262 Identities=18% Similarity=0.208 Sum_probs=220.4
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 016603 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (386)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~~~~l 143 (386)
.+++++|+||+|||. +|||||++ +.+|++||+ ||+++|+|||+||+++ | .+++++++++..+.+.+.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 457899999999996 99999995 789999998 7999999999999998 4 236778888877766654
Q ss_pred HcCCC--CCCcEEEEcccchhhhHHHHHH--hcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccce
Q 016603 144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (386)
Q Consensus 144 A~Gld--p~k~~i~~qS~~~~~~~l~w~l--~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adi 219 (386)
+||| |+|+.||+||+|.++..+.|++ ++.++++++.+..+||.+... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8999 9999999999998876666665 889999998877799876543 36789999999999999999999999
Q ss_pred eecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC
Q 016603 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 220 vpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D 299 (386)
||||.||++|++++||++++||.. .|..+.. ++||++ ||++|||||. +|+|+|+|
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~---~n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSL---DNYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGG---TCCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCC---CCeeCCCC
Confidence 999999999999999999998732 1333433 679998 8877999998 46999999
Q ss_pred CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhH----HHH
Q 016603 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH----PIQ 375 (386)
Q Consensus 300 spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~----pir 375 (386)
+|++|++||+++.++ +++.||++|++.+.+|+++.+.+ +|+++|+.||++|+++++ |||
T Consensus 246 sp~~i~~Ki~~~~d~----------------~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~~~~~pir 308 (432)
T 1h3f_A 246 PPEAMFKKLMRVPDP----------------LLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYALPQIPPR 308 (432)
T ss_dssp CHHHHHHHHHTSCGG----------------GHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSSCCSC
T ss_pred CHHHHHHHHhCCCcc----------------HHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccchHH
Confidence 999999999998643 57899999999999999998877 999999999999999999 999
Q ss_pred HHHHHHhh
Q 016603 376 SWQMALQK 383 (386)
Q Consensus 376 ~r~~~~~~ 383 (386)
+||+++++
T Consensus 309 err~~~~~ 316 (432)
T 1h3f_A 309 IDRAFYES 316 (432)
T ss_dssp CSHHHHHH
T ss_pred HHHHHhhc
Confidence 99999875
No 31
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-56 Score=454.14 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=229.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C--------CCHHHHHHHHHHH---HHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~--------~~~~~i~~~~~~~---~~~~ 142 (386)
.++++|+||+|||+ +||||+++ +.+|++||+ ||+++++|||+||+++ | .++++++++++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999996 99999764 689999998 7999999999999998 5 6789999999766 6778
Q ss_pred HHcCCCCCCcEEEEcccchh-hhHHHHH--HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc----
Q 016603 143 LACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (386)
Q Consensus 143 lA~Gldp~k~~i~~qS~~~~-~~~l~w~--l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~---- 215 (386)
+++|+||+|+.||+||+|.+ +..+.|+ +++.+++++|.|+.+||++. ..+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhccC
Confidence 89999999999999999987 4588888 89999999999999999765 23678999999999999999999
Q ss_pred ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCee
Q 016603 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (386)
Q Consensus 216 ~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I 295 (386)
++|+||||.||++|++++||+|+|||+. .|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999942 2334443 679999 88 69999985 3599
Q ss_pred eccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHHHHHHHHHhh
Q 016603 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 371 (386)
Q Consensus 296 ~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~Lae~I~~~L 371 (386)
+|+| +|+++++||+++. ++++.+++.+|..++++++++++++|. +.+++++|+.||++|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~ 308 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNTA-------------DADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLV 308 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999963 234667777777777788999999995 4589999999999999999
Q ss_pred HHHHHHHHHHhh
Q 016603 372 HPIQSWQMALQK 383 (386)
Q Consensus 372 ~pir~r~~~~~~ 383 (386)
+..++..+....
T Consensus 309 hg~~~~~~a~~~ 320 (432)
T 2jan_A 309 HGEAATAAVEHA 320 (432)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 998887765543
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.3e-56 Score=447.25 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=213.4
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (386)
++++||+||+|||. +||||++ ++.+|++||+ |++++|+|||+||+|+ |. +++++++++++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997 9999966 5789999998 7999999999999998 42 689999999999999999
Q ss_pred cCCCCCC-----------cEEEEcccchhhhHHHHHHhc---ccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhh
Q 016603 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLLSS---ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (386)
Q Consensus 145 ~Gldp~k-----------~~i~~qS~~~~~~~l~w~l~~---~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAA 210 (386)
+ +||++ ++||+||+|..+..+.|++.+ .+++++|.+..+||.+.+. .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 88854 899999999877666777554 7899999988888765432 25789999999999999
Q ss_pred hhhhc----ccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCccccc
Q 016603 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (386)
Q Consensus 211 Dil~~----~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSK 286 (386)
||++| ++|+||||.||++|++++||+|+|||+ + .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999994 2 1333433 679999 78 69999
Q ss_pred CCCCCCCeeeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHH
Q 016603 287 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 362 (386)
Q Consensus 287 S~p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~ 362 (386)
|. +|+|+|+| +|++|++||+++. ++++.+++.+|..++++++++++++|. +.+++++|+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQP-------------DDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 96 68999999 9999999999963 234677888887777788999999995 4689999999
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q 016603 363 LTDALIEHLHPIQSWQMALQ 382 (386)
Q Consensus 363 Lae~I~~~L~pir~r~~~~~ 382 (386)
||++|+++++..++..+...
T Consensus 322 La~~v~~~l~g~~~~~~a~~ 341 (356)
T 2pid_A 322 LAAEVTKLVHGREGLDSAKR 341 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 99999999999988776554
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.1e-54 Score=441.55 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=229.1
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (386)
.++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. +++++++|++++.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999 99999996 689999998 7999999999999998 43 899999999999999999
Q ss_pred cCCCC---CCcEEEEcccch-hhhHHHHHH--hcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016603 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (386)
Q Consensus 145 ~Gldp---~k~~i~~qS~~~-~~~~l~w~l--~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~--- 215 (386)
+ ||| +|+.+|.||+|. ++.++.|+. ++.+++++|.++.+||.+. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 998 999999999997 578999986 7899999999999998654 3 678999999999999999999
Q ss_pred -ccceeecccchhHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 216 -~adivpvG~DQ~~h~elaRdia~k~-n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
++|+||||.||++|++++||+|+|| |+ + .|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~--~----------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQ--T----------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCC--C----------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 1 1334443 679999 88 6999998 57
Q ss_pred eeeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHHHHHHHHH
Q 016603 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 369 (386)
Q Consensus 294 ~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~Lae~I~~ 369 (386)
+|+|+| +|++|++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||++|++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~ 305 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTK 305 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999 9999999999953 234566777777667788999999995 45999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q 016603 370 HLHPIQSWQMALQKL 384 (386)
Q Consensus 370 ~L~pir~r~~~~~~~ 384 (386)
+++..++..+....+
T Consensus 306 ~~hg~~~~~~a~~~~ 320 (420)
T 1jil_A 306 FIHGEDALNDAIRIS 320 (420)
T ss_dssp HHHCHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHH
Confidence 999988877665544
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=2.8e-55 Score=445.30 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=219.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHH---HHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~---~~~ 141 (386)
.++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. ++++++++++.+ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999996 689999998 7999999999999998 53 889999999776 556
Q ss_pred HHHcCCCCCCcEEEEcccchhhhHHHHHHh---cccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhc---
Q 016603 142 YLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (386)
Q Consensus 142 ~lA~Gldp~k~~i~~qS~~~~~~~l~w~l~---~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~--- 215 (386)
|+++|+||+|+.||.||+|..+..+.|.+. ..+++++|.+.. .+.++.+ +++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~---~~k~r~~-~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKE---SVQSRIE-TGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSH---HHHTTTT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccc---hhhhccC-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 678899999999999999988665666555 456666555544 4444443 678999999999999999999
Q ss_pred -ccceeecccchhHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 216 -~adivpvG~DQ~~h~elaRdia~k~-n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
++|+||||.||++|++++||+|+|| |+. .|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 741 1333433 679998 88 6999997 58
Q ss_pred eeeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cCChhhHHHHHHHHHHH
Q 016603 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 369 (386)
Q Consensus 294 ~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~Lae~I~~ 369 (386)
+|+|+| +|+++++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~ 304 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINTD-------------DRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTK 304 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 999999 9999999999953 234566777777667788999999995 46999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q 016603 370 HLHPIQSWQMALQKL 384 (386)
Q Consensus 370 ~L~pir~r~~~~~~~ 384 (386)
+++..++..+....+
T Consensus 305 ~~hg~~~~~~a~~~~ 319 (419)
T 2ts1_A 305 LVHGEEALRQAIRIS 319 (419)
T ss_dssp HHHCHHHHHHHHHHC
T ss_pred HHcCHHHHHHHHHHH
Confidence 999988877655443
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.4e-54 Score=437.20 Aligned_cols=279 Identities=18% Similarity=0.146 Sum_probs=227.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 016603 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (386)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~~~~lA 144 (386)
.++++|+||+|||. ||||||++ +.+|++||+ ||+++++|||+||+|+ | .+++.++++++.+.+++++
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999 99999996 689999998 7999999999999998 4 2678899999999888888
Q ss_pred cC-----------CC---CCCcEEEEcccc-hhhhHHHHH--HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHH
Q 016603 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (386)
Q Consensus 145 ~G-----------ld---p~k~~i~~qS~~-~~~~~l~w~--l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~L 207 (386)
+| +| |+++.||.||+| +++..+.|+ +++.++++++.+..+||.+.. ..+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~--~~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMT--QGDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTS--SSSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhc--CCCCcccHHHHHHHH
Confidence 65 45 789999999998 567888888 888999997665556664322 135789999999999
Q ss_pred Hhhhhhhc----ccceeecccchhHHHHHHHHHHHHHhhhhCC---c--cccccCCCCCccccCCccccCCCCcccccCC
Q 016603 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG---R--KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (386)
Q Consensus 208 QAADil~~----~adivpvG~DQ~~h~elaRdia~k~n~~yg~---~--~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~ 278 (386)
|||||+++ ++|+||||.||++|++++||+|+|||+.|+. . ..+++| ++.|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987621 0 011111 233444544 679999
Q ss_pred CCCcccccCCCCCCCeeeccC---CHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHc-cC
Q 016603 279 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 354 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~-~l 354 (386)
|| +|||||. +|+|+|+| ||+++++||+++. ++++.+++.+|..++++++++|+++|. +.
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-------------DQEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-------------TTTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 78 6999997 58999999 9999999999963 235677888887777888999999995 35
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 016603 355 NWGTFKPLLTDALIEHLHPIQSWQMALQKLQ 385 (386)
Q Consensus 355 ~~~dlK~~Lae~I~~~L~pir~r~~~~~~~~ 385 (386)
+++++|+.||++|++++++.++..+.....+
T Consensus 353 ~~~~~K~~LA~~v~~~lhg~~~~~~a~~~~~ 383 (392)
T 1y42_X 353 SKRVAQHTLAREVVTLVHGKQEASAAEDQHR 383 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 8999999999999999999999888766543
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.9e-49 Score=423.75 Aligned_cols=264 Identities=14% Similarity=0.150 Sum_probs=214.3
Q ss_pred CCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEeccceecC-C--CCHHHHHHHHHHHHHHHH
Q 016603 70 PVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYL 143 (386)
Q Consensus 70 ~~~~~~~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ-~--~~~~~i~IaDlhA~t~-~--~~~~~i~~~~~~~~~~~l 143 (386)
+.++....+..|+|+- |||.+||||++++++.+.++| . |++++|+||||||+++ + .+++++++++.+++++|+
T Consensus 374 ~~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~ 452 (690)
T 3p0j_A 374 ALPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLK 452 (690)
T ss_dssp --CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555567889888 999999999999765366654 4 7899999999999998 4 589999999999999999
Q ss_pred HcCCCCCCcEEEEcccchhh-hHHHHH----HhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccc
Q 016603 144 ACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSD 218 (386)
Q Consensus 144 A~Gldp~k~~i~~qS~~~~~-~~l~w~----l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~ad 218 (386)
|+|+|+ +++|++||+|... .+++|. ++..++++|+.+. ++.+++++|+|+||+||||||+.+++|
T Consensus 453 alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~---------~~~~~~~i~~~~YPlmQaaDi~~l~aD 522 (690)
T 3p0j_A 453 AYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEEL---------YGGEVRNAGQVIAALMRVATALMLSVS 522 (690)
T ss_dssp HHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHH---------TTSCCSSHHHHHHHHHHHHHHHHTTCS
T ss_pred hcCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHH---------hCCCCcchHHHHHHHHHHhhhhccCCC
Confidence 999997 7999999998653 356776 4556666665543 334778999999999999999999999
Q ss_pred eeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc
Q 016603 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (386)
Q Consensus 219 ivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~ 298 (386)
++|||+||++|++|+||+++++++ |..++. .++|+|.++..+||||++ +|+|+|+
T Consensus 523 i~~gG~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~ 577 (690)
T 3p0j_A 523 HVISTSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLD 577 (690)
T ss_dssp EEEECSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTT
T ss_pred EEecccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeecc
Confidence 999999999999999999998542 444444 679999655555567754 7999999
Q ss_pred CCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhc-------------------CCCCHHHHHHHH--ccCChh
Q 016603 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------------SGKTKGEVAEEC--QNMNWG 357 (386)
Q Consensus 299 Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~-------------------~~~~~eel~~~~--~~l~~~ 357 (386)
|+|++|++||++|||++. .+.|++++|++++ ++++++||+++| |.+||+
T Consensus 578 D~~~~i~~KI~kA~c~p~----------ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~ 647 (690)
T 3p0j_A 578 DNDMDIRRKIKKAYSAPN----------EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPA 647 (690)
T ss_dssp CCHHHHHHHHHHSCCCTT----------CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHH
T ss_pred CCHHHHHHHHHHhcCCCC----------CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHH
Confidence 999999999999999862 2456788888865 136899999999 569999
Q ss_pred hHHHHHHHHHHHhhHHHHHHHH
Q 016603 358 TFKPLLTDALIEHLHPIQSWQM 379 (386)
Q Consensus 358 dlK~~Lae~I~~~L~pir~r~~ 379 (386)
|+|++|+++|+++|+|+|++++
T Consensus 648 dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 648 DLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997
No 37
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.30 E-value=1.2e-11 Score=127.84 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=130.8
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc-------EE
Q 016603 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA-------SV 154 (386)
Q Consensus 84 Gi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~-------~i 154 (386)
-=.|||.+||||+..++.+|...+. +..+++-|.|. |+ ....+..+.+..++.++||++|+. .+
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-------DAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 3367899999999999999988766 56666679998 32 345677888999999999999973 48
Q ss_pred EEcccchhhh-HHH-------HHHhcccCHHHhhhhh---------chH---------HHHHh--hCCC----------C
Q 016603 155 FVQSHVRAHV-ELM-------WLLSSATPIGWLNKMI---------QFK---------EKSHK--AGGE----------N 196 (386)
Q Consensus 155 ~~qS~~~~~~-~l~-------w~l~~~~~v~~L~r~~---------~~k---------~~~~~--~~~~----------~ 196 (386)
|+||+..+.- +.. ..+.|+++-.+|+++- .|. +..+. .|.. .
T Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 164 (498)
T 2ja2_A 85 YRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDD 164 (498)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSC
T ss_pred eeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCc
Confidence 9999986532 111 1156899988876542 111 00000 0100 0
Q ss_pred c-----ccccchhhHHHhhhhhhcc-------------------cceeecccchhHHHHHHHHHHHHHhhhhCCcccccc
Q 016603 197 V-----GVALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (386)
Q Consensus 197 ~-----~~g~l~YP~LQAADil~~~-------------------adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~ 252 (386)
+ -.|.+.++.-+.-|.++++ .|+|.-|.|+..+...-+.+.+.|+. +|.
T Consensus 165 ~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------ 237 (498)
T 2ja2_A 165 LAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------ 237 (498)
T ss_dssp EEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------
T ss_pred eEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------
Confidence 0 1244555555556666554 45555599999999999999999966 431
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 253 g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
| ++.|+..+. +.+.+. +| +||||++. .+.|.+ .|+.|.+-+...
T Consensus 238 g------~~~P~~~h~---plil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 238 A------ERIPKFAHL---PTVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp C------CCCCEEEEE---CCEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHTS
T ss_pred C------CCCCeEEEe---eeeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHHh
Confidence 1 445776665 457776 67 69999973 334433 567777666653
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.29 E-value=3.6e-12 Score=123.98 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=104.5
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh
Q 016603 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (386)
Q Consensus 84 Gi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~ 162 (386)
-=.|||.+||||+.+++.+|+..+. +..+++-|.|.. +.....+.++.+.+++.++|+++++. +++||+..+
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~ 83 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHD 83 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHH
Confidence 3357799999999999999988765 667788999862 12344567888999999999999975 899999754
Q ss_pred -hhHHH-------HHHhcccCHHHhhhhhc-hHHHHHh---hC---------------CCCcccccchhhH-HHhhhhhh
Q 016603 163 -HVELM-------WLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILL 214 (386)
Q Consensus 163 -~~~l~-------w~l~~~~~v~~L~r~~~-~k~~~~~---~~---------------~~~~~~g~l~YP~-LQAADil~ 214 (386)
+.+.. +.+.|.++-.+|++... |....+. .+ -++.-.|.+.++. .+.-|.++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL 163 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 163 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEE
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEE
Confidence 22111 12568888888876410 0000000 00 0011124444443 35556666
Q ss_pred cccc-------------------eeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccc
Q 016603 215 YQSD-------------------FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (386)
Q Consensus 215 ~~ad-------------------ivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lp 275 (386)
+++| +|.-|.|+..+...-..+.+.++ ++.|...+. ++|.
T Consensus 164 ~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~ 222 (298)
T 1nzj_A 164 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLAL 222 (298)
T ss_dssp ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCC
T ss_pred ECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeE
Confidence 5544 44449999887766666667665 334666655 5677
Q ss_pred cCCCCCcccccCC
Q 016603 276 SLTDGLSKMSKSA 288 (386)
Q Consensus 276 gL~dG~~KMSKS~ 288 (386)
+. +| +||||+.
T Consensus 223 ~~-~g-~KLSKR~ 233 (298)
T 1nzj_A 223 NP-QG-AKLSKQN 233 (298)
T ss_dssp C------------
T ss_pred CC-CC-CcccccC
Confidence 87 67 6999997
No 39
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.23 E-value=1.4e-11 Score=127.21 Aligned_cols=200 Identities=16% Similarity=0.149 Sum_probs=128.6
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE----
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~---- 153 (386)
.++=..=.|||.+||||+..++.+|...+. +.++++.|.|. + ......+....+.+++.++||++|...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D--~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----D--TERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----C--TTTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----C--cccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 344445567899999999999999987765 77888999998 1 123456677889999999999999753
Q ss_pred ---EEEcccchh-hhHHHHH-------HhcccCHHHhhhh--hchHHH--HHhhC---------C-CCc-----ccccch
Q 016603 154 ---VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-ENV-----GVALLT 203 (386)
Q Consensus 154 ---i~~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~--~~~k~~--~~~~~---------~-~~~-----~~g~l~ 203 (386)
.|+||+..+ +.+..-. +.|.+|-.+|++. ..|... ....| + ..+ -.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 699999754 2221111 4577777766542 001100 00001 0 000 012233
Q ss_pred ----------------hhHHHhhhhh---hcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 016603 204 ----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (386)
Q Consensus 204 ----------------YP~LQAADil---~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~ 264 (386)
||..+-|.++ ..+.++|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 3333333222 2356777779999999998888888886 34577
Q ss_pred cccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 265 ~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
..+. +.|.+. +| +||||++. .+.|.+ .|+.|.+-+...
T Consensus 242 f~H~---pli~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 242 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp EEEE---CCEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHHT
T ss_pred EEEE---eeeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHHh
Confidence 6665 457786 77 69999973 345543 678888777764
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.20 E-value=1.9e-11 Score=125.62 Aligned_cols=192 Identities=18% Similarity=0.145 Sum_probs=128.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE-------EEEc
Q 016603 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~q 157 (386)
.|||.+||||+..++.+|...+. +..+++-|.|.- ......+..+.+..++.++||+++... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD------~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTD------RARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCC------TTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCC------CcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 57899999999999999987765 677888888881 113345677888999999999999752 4999
Q ss_pred ccchh-hhHHHH-------HHhcccCHHHhhhh-------------hchHHHHHhh--CC---------C--Cc-----c
Q 016603 158 SHVRA-HVELMW-------LLSSATPIGWLNKM-------------IQFKEKSHKA--GG---------E--NV-----G 198 (386)
Q Consensus 158 S~~~~-~~~l~w-------~l~~~~~v~~L~r~-------------~~~k~~~~~~--~~---------~--~~-----~ 198 (386)
|+..+ +.+..- .+.|.++-.+|.++ .+..+..+.. |. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99754 222111 15688888887643 1222211111 10 0 01 1
Q ss_pred cccchhhHHHhhhhhhcccceeec-------------------ccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 016603 199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (386)
Q Consensus 199 ~g~l~YP~LQAADil~~~adivpv-------------------G~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~ 259 (386)
.|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.++
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 244667766667777766555555 9999999998888888876
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhh
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (386)
++.|+..+. +.+.+. +| .||||++. +. .|.+ .|+.|.+-+..
T Consensus 225 ~~~p~~~h~---~li~~~-~g-~klSKR~g---~~-~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 WEAPRFYHM---PLLRNP-DK-TKISKRKS---HT-SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CCCCEEEEE---CCCBCT-TS-CBCCTTTS---CC-BHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeEEEe---eeeeCC-CC-Cccccccc---hh-hHHHHHHCCCCHHHHHHHHHH
Confidence 334665554 456776 67 69999974 22 3433 57777777765
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.10 E-value=3.6e-11 Score=126.77 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=126.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE---
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS--- 153 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~--- 153 (386)
+.++=..=.|||.+||||+.+++.+|...+. ++++++-|.|. ++ .....+....+..++.++||+++...
T Consensus 129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~g 202 (592)
T 3al0_C 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIG 202 (592)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcC
Confidence 3445555678899999999999999987655 77888999885 21 13455677888999999999999742
Q ss_pred ----EEEcccchh-hhHHHHH-------HhcccCHHHhhhh--hchHHH--HHhhC---------C-C-----Ccccccc
Q 016603 154 ----VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-E-----NVGVALL 202 (386)
Q Consensus 154 ----i~~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~--~~~k~~--~~~~~---------~-~-----~~~~g~l 202 (386)
.|+||+..+ +.+..-. +.|++|-.+|++. ..|... ....| + . +.-.|.+
T Consensus 203 G~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~ 282 (592)
T 3al0_C 203 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 282 (592)
T ss_dssp CTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSE
T ss_pred CCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeeccccee
Confidence 689999754 2221111 4577776665542 000000 00000 0 0 0011222
Q ss_pred h----------------hhHHHhhhhh---hcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC
Q 016603 203 T----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP 263 (386)
Q Consensus 203 ~----------------YP~LQAADil---~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P 263 (386)
. ||..+-|+++ ..+.++|.-|.|+..+...-+.+.+.|+ ++.|
T Consensus 283 ~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P 344 (592)
T 3al0_C 283 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAP 344 (592)
T ss_dssp ECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCC
T ss_pred eeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCC
Confidence 2 4444433332 2467778889999999988888887765 3446
Q ss_pred ccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 264 EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 264 ~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
+..+. +.|.+. +| .||||++. + +.|.+ .|+.|.+-+...
T Consensus 345 ~~~hl---pli~~~-~g-~KLSKR~g---~-~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 345 VFMHI---PLILGS-DR-TPLSKRHG---A-TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp BCCEE---CCCBCT-TS-SBCCTTTC---S-SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred eEEEe---eeeeCC-CC-CcccccCC---c-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 65554 457786 67 69999973 2 44443 688888877663
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.06 E-value=6e-09 Score=107.71 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=124.7
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccch
Q 016603 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (386)
Q Consensus 83 tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~ 161 (386)
..=.|||.+||||...++.+|+..+. +.++++-|.|.-. .....+.+..+..++.++||+++.. +|+||+..
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde~-~~~QS~r~ 78 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDEG-PYFQSDRL 78 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCCC-CccccCCH
Confidence 34467899999999999999987654 6788899999821 2334667888999999999999963 89999975
Q ss_pred h-hhHHHHH-------HhcccCHHHhhhhh----------ch---------HHHHH--hhCC---------C--------
Q 016603 162 A-HVELMWL-------LSSATPIGWLNKMI----------QF---------KEKSH--KAGG---------E-------- 195 (386)
Q Consensus 162 ~-~~~l~w~-------l~~~~~v~~L~r~~----------~~---------k~~~~--~~~~---------~-------- 195 (386)
+ +.+..-. +.|+++-.+|+.+. .| .+..+ ..|. +
T Consensus 79 ~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D 158 (492)
T 2cfo_A 79 DLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQD 158 (492)
T ss_dssp HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEe
Confidence 4 2222211 45777777665421 01 00000 0010 0
Q ss_pred ---------Cccc---------------ccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccc
Q 016603 196 ---------NVGV---------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (386)
Q Consensus 196 ---------~~~~---------------g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~ 251 (386)
+..+ |..+|=+==+.|....+.|+|..|.|+..+-..-..+.+.|+
T Consensus 159 ~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg---------- 228 (492)
T 2cfo_A 159 LVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG---------- 228 (492)
T ss_dssp TTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT----------
T ss_pred cceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC----------
Confidence 0011 222232233334444567788899999999888888878765
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 252 ~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
++.|...+. ++|.+. +| +|||||+. + +.|.+ .|+.|..-+...
T Consensus 229 --------~~~P~~~H~---plil~~-~g-~KLSKr~g---~-~~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 229 --------ATPPNFAHT---PLILNS-TG-QKLSKRDG---V-TSISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp --------CCCCEEEEE---CCEECS-SS-SBCCTTSS---C-CBHHHHHHTTCCHHHHHHHHHHT
T ss_pred --------CCCceEEEe---eeEECC-CC-CEecccCC---c-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 345766665 457787 77 69999973 2 23432 577777777663
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.80 E-value=5.4e-08 Score=100.36 Aligned_cols=200 Identities=15% Similarity=0.094 Sum_probs=120.3
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~----- 152 (386)
.+....=.|||.+||||..+++.+|..... ++..++-|.|.. ....+.+..+.+..++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD------~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD------LERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS------CCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC------ccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 456677789999999999999999876544 667777777662 12334566777888899999999863
Q ss_pred --EEEEcccchh-hhHHHHH-------HhcccCHHHhhhh---------------------hchHHHHH--hhCC-----
Q 016603 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKM---------------------IQFKEKSH--KAGG----- 194 (386)
Q Consensus 153 --~i~~qS~~~~-~~~l~w~-------l~~~~~v~~L~r~---------------------~~~k~~~~--~~~~----- 194 (386)
-.|+||+..+ +.+..-. +.|.++-.+|..+ .+-.+..+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2588999533 2221111 3355544333221 00000000 0010
Q ss_pred --------------------CCcccccch------hhHHHhhhhh---hcccceeecccchhHHHHHHHHHHHHHhhhhC
Q 016603 195 --------------------ENVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (386)
Q Consensus 195 --------------------~~~~~g~l~------YP~LQAADil---~~~adivpvG~DQ~~h~elaRdia~k~n~~yg 245 (386)
++..+|-++ ||..+-|+++ ..+.|+|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 000111111 5555544443 3578999999999999988888888775
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhhc
Q 016603 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (386)
Q Consensus 246 ~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (386)
++.|...+. +.+.+. +| +||||++. + ..|.| .|+.|.+-+...
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g---~-~~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHG---A-TSVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGS---C-CBHHHHHHHTCCHHHHHHHHHTS
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCC---c-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 345765554 345665 67 59999973 2 24433 566676666553
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.73 E-value=2.3e-07 Score=95.68 Aligned_cols=199 Identities=19% Similarity=0.188 Sum_probs=116.3
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~ 155 (386)
+.++=..=.|||.+||||+..++.+|+..+. +...++-|-|. |+ ....+.++.+.+++.++||+|+.. .|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~~-~~ 96 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDEG-PY 96 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSEE-EE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCCC-Cc
Confidence 4455555567799999999999999987654 66777778775 32 344567888999999999999963 79
Q ss_pred Ecccchh-hhHHHH-------HHhcccCHHHhhhhhch-HHHH--Hhh-----------------C---------C-C-C
Q 016603 156 VQSHVRA-HVELMW-------LLSSATPIGWLNKMIQF-KEKS--HKA-----------------G---------G-E-N 196 (386)
Q Consensus 156 ~qS~~~~-~~~l~w-------~l~~~~~v~~L~r~~~~-k~~~--~~~-----------------~---------~-~-~ 196 (386)
+||+..+ +.+..- .+.|+++-.+|+.+-.- .... ..+ | . + .
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 9999643 222211 14577877776543100 0000 000 0 0 0 0
Q ss_pred cc-----cccch----------------hhHHHhh---hhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCcccccc
Q 016603 197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (386)
Q Consensus 197 ~~-----~g~l~----------------YP~LQAA---Dil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~ 252 (386)
+. -|.+. ||..+-| |=...+.++|.-|.|...+---=..+.+.|+
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG----------- 245 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG----------- 245 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence 00 01111 2333322 2233478899999998776655555556654
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeecc------CCHHHHHHHhhhc
Q 016603 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKRC 311 (386)
Q Consensus 253 g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~------Dspe~I~~KI~kA 311 (386)
++.|...+. +.|.+- +| +||||.+. ...|. -.|+.|.+-+...
T Consensus 246 -------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g----~~sl~~~r~~G~~peal~n~l~~l 294 (490)
T 4g6z_A 246 -------GEVPVYAHL---PTVLNE-QG-EKMSKRHG----AMSVMGYRDAGYLPEAVLNYLARL 294 (490)
T ss_dssp -------CCCCEEEEE---CCEECT-TS-SBCCTTTT----CCBHHHHHHTTCCHHHHHHHHHTS
T ss_pred -------CCCCeEEEe---cceeCC-CC-CcccCCCC----CcCHHHHHHCCCCHHHHHHHHHHh
Confidence 456876665 447775 67 79999973 34443 2688888877653
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.51 E-value=1.8e-06 Score=89.62 Aligned_cols=193 Identities=20% Similarity=0.177 Sum_probs=116.9
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE-------E
Q 016603 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-------V 154 (386)
Q Consensus 84 Gi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~-------i 154 (386)
-=.|||.+||||...++.+|...+. |+++++-|-|. |+ ....+....+..++..+||++|... .
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~p 102 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT-------DQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAP 102 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 3356799999999999999986654 67788888887 33 2234566777888899999998632 4
Q ss_pred EEcccchhh-hHHHH-H------HhcccCHHHhhhhhc-------------------hHHHHHh--hC-----------C
Q 016603 155 FVQSHVRAH-VELMW-L------LSSATPIGWLNKMIQ-------------------FKEKSHK--AG-----------G 194 (386)
Q Consensus 155 ~~qS~~~~~-~~l~w-~------l~~~~~v~~L~r~~~-------------------~k~~~~~--~~-----------~ 194 (386)
|+||+..+. .+..- + +.|.++-.++++... ..++... .+ .
T Consensus 103 y~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~ 182 (512)
T 4gri_A 103 YVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLE 182 (512)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred ccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeeccccc
Confidence 799986442 21111 1 458888776654321 1111000 00 0
Q ss_pred CCc-----ccccch-----------------hhHHHhhhh---hhcccceeecccchhHHHHHHHHHHHHHhhhhCCccc
Q 016603 195 ENV-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 249 (386)
Q Consensus 195 ~~~-----~~g~l~-----------------YP~LQAADi---l~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~ 249 (386)
.++ -.|.+. ||..+=|-. ...+.++|.-|.|...+--.=.-|.+.|+
T Consensus 183 ~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg-------- 254 (512)
T 4gri_A 183 GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK-------- 254 (512)
T ss_dssp CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT--------
T ss_pred CCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC--------
Confidence 000 012111 232222222 22478999999999988777777777766
Q ss_pred cccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC------CHHHHHHHhhh
Q 016603 250 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (386)
Q Consensus 250 ~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (386)
++.|...+. +.|.+- +| +|+||.+. ...+.+ .|+.+.+-+-.
T Consensus 255 ----------~~~P~y~H~---pli~~~-~g-~kLSKR~~----~~~v~~~~~~G~lPeAl~NyLal 302 (512)
T 4gri_A 255 ----------WKPPIYCHL---PMVMGN-DG-QKLSKRHG----STALRQFIEDGYLPEAIINYVTL 302 (512)
T ss_dssp ----------CCCCEEEEE---CCCBCT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHH
T ss_pred ----------CCCCeEEec---chhccc-cc-cccCcccc----cccHHHHHHcCCChHHHHHHHHH
Confidence 556877776 447775 66 69999973 333332 45555555444
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.34 E-value=5.2e-06 Score=86.61 Aligned_cols=175 Identities=21% Similarity=0.216 Sum_probs=97.4
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 81 i~tGi~--PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
+.+=|. |||.+||||...++.+|...+. +..+++-|-|. |+ ....+.+..+.+++.++|++++ ++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~ 167 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI 167 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence 445554 5699999999999988876554 67788888887 33 3344567788899999999997 5899
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhhhh-----------hchHHHHH-----hhCCC--------------Ccc
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM-----------IQFKEKSH-----KAGGE--------------NVG 198 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~r~-----------~~~k~~~~-----~~~~~--------------~~~ 198 (386)
||+..+ +.+..-. +.|.++-.++... .+..+..+ ..|.+ +.+
T Consensus 168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence 999743 2222211 3466666655321 11110000 00100 001
Q ss_pred c----------------cc--chhhHHH---hhhhhhcccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 016603 199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (386)
Q Consensus 199 ~----------------g~--l~YP~LQ---AADil~~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~ 257 (386)
+ |. ..||..+ +.|....+.|+++.|.|...+-..=.-+...++
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---------------- 311 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---------------- 311 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence 0 11 1355555 445556789999999998876655554555554
Q ss_pred ccccCCccccCCCCcccccCCCCCcccccCC
Q 016603 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (386)
Q Consensus 258 ~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~ 288 (386)
++.|...+. ++| .+ +| .|||||.
T Consensus 312 --~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp --CCCCEEECC---CCB-C---------CHH
T ss_pred --CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 334766655 556 45 67 6999996
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.03 E-value=3.4e-05 Score=80.49 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=66.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 016603 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (386)
Q Consensus 79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~ 156 (386)
.+.=.+=.|||.+||||...++.+|...+. +..+++-|-|. |+ ....+....+.+++.++||+++. .+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 344455667899999999999989876554 67788888887 33 33456778889999999999965 3799
Q ss_pred cccchh-hhHHHHH-------HhcccCHHHhh
Q 016603 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (386)
Q Consensus 157 qS~~~~-~~~l~w~-------l~~~~~v~~L~ 180 (386)
||+..+ +.+.+-. +.|.++-.++.
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 998753 3332222 34666665553
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.95 E-value=5.9e-05 Score=82.10 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=66.1
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS 158 (386)
+.=.+=.|||.+||||...++.+|..... +..+++-|-|. + +.....+++..+..++.++||+++. .+++||
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D--~~R~~~e~~~~IledL~wLGl~wde-~~~~qS 140 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----N--PELARQEYVDSIADDLKWLGLDWGE-HFYYAS 140 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----C--TTTCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----C--cccccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence 33346677899999999999989876554 67788888887 2 1233556778889999999999975 489999
Q ss_pred cchh-hhHHHHH-------HhcccCHHHhh
Q 016603 159 HVRA-HVELMWL-------LSSATPIGWLN 180 (386)
Q Consensus 159 ~~~~-~~~l~w~-------l~~~~~v~~L~ 180 (386)
+..+ +.+..-. +.|.++-.++.
T Consensus 141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 9743 3222211 44677766553
No 49
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.54 E-value=0.00028 Score=72.42 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=48.3
Q ss_pred eEEEee--CCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHHH
Q 016603 80 RIVSGV--QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLA 144 (386)
Q Consensus 80 ~i~tGi--~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA 144 (386)
.+++|- -|||.+||||....+.. +.+++ .|++|.+.- .|-|..-. ..++ +-..++...+.+++.+
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 444554 46699999999876633 33444 377776543 23332211 1133 3345566788899999
Q ss_pred cCCCCCCcEEEEccc
Q 016603 145 CGIDNSKASVFVQSH 159 (386)
Q Consensus 145 ~Gldp~k~~i~~qS~ 159 (386)
+|++++ ..+..++
T Consensus 87 lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 87 LKIEYT--KFIRTTD 99 (497)
T ss_dssp TTCCCS--EEEETTS
T ss_pred hCCcCC--CCccCCC
Confidence 999988 4666776
No 50
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.48 E-value=0.00079 Score=69.83 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=47.3
Q ss_pred ceEEEeeC--CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 016603 79 KRIVSGVQ--PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (386)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnyl~~i~--~~~~lQ~--~~~~~i-~IaDlhA~t~-------~~~~~~-i~~~~~~~~~~~l 143 (386)
...++|-= |||.+||||..+++. -+.++++ |++|.+ .-.|.|..-. ..++++ ..+....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34445544 569999999987652 2334433 888865 3345543311 124433 4445567888899
Q ss_pred HcCCCCCCcEEEEccc
Q 016603 144 ACGIDNSKASVFVQSH 159 (386)
Q Consensus 144 A~Gldp~k~~i~~qS~ 159 (386)
++|+.++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 3444443
No 51
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.45 E-value=0.00083 Score=68.79 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=47.1
Q ss_pred eEEEeeCC--CCcchhhhHHHHHHH--HHHHh--ccCcEEEEEe-ccceecC-------CCCHH-HHHHHHHHHHHHHHH
Q 016603 80 RIVSGVQP--TGSIHLGNYLGAIKN--WIALQ--NSYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYLA 144 (386)
Q Consensus 80 ~i~tGi~P--TG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~Ia-DlhA~t~-------~~~~~-~i~~~~~~~~~~~lA 144 (386)
.+++|-=| +|.+||||....+.. +.+++ .|++|.+..+ |-|..-. ..++. -.+++...+.+++.+
T Consensus 5 ~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 84 (500)
T 2d5b_A 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDL 84 (500)
T ss_dssp EEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45556555 799999999876622 33443 3777766432 3222110 11333 334456678889999
Q ss_pred cCCCCCCcEEEEccc
Q 016603 145 CGIDNSKASVFVQSH 159 (386)
Q Consensus 145 ~Gldp~k~~i~~qS~ 159 (386)
+|+++| ..+..++
T Consensus 85 lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 85 LGIAYD--DFIRTTE 97 (500)
T ss_dssp TTCCCS--EEEETTS
T ss_pred hCCcCC--CCcccCC
Confidence 999988 3566666
No 52
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.00 E-value=0.00058 Score=71.90 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=28.6
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 016603 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (386)
Q Consensus 80 ~i~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i--~IaDl 119 (386)
.-|+|--|+|.+||||..+++ .-+.++.+ |++|+. -|.||
T Consensus 107 ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 107 VEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 345788889999999998765 33444444 788765 57777
No 53
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.21 E-value=0.0049 Score=65.38 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=27.5
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i--~IaDl 119 (386)
|+|--|+|.+|+||..+++ .-+.++.+ |++|+. -|.||
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 5788999999999988765 22334433 788864 57887
No 54
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.18 E-value=0.012 Score=60.12 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=44.2
Q ss_pred CceEE-EeeCCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-ecccee--cC-----CCCHHH-HHHHHHHHHHHHH
Q 016603 78 KKRIV-SGVQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAI--TL-----PYDTQQ-LSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~I-aDlhA~--t~-----~~~~~~-i~~~~~~~~~~~l 143 (386)
++++| +|.=|.|.+||||....+.. +.+.. .|++|.+.. -|.|.- +. ..++.+ ..+++..+.+++.
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~ 104 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK 104 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44444 57777899999998776522 22222 378886543 333321 00 123333 3455677888999
Q ss_pred HcCCCCCC
Q 016603 144 ACGIDNSK 151 (386)
Q Consensus 144 A~Gldp~k 151 (386)
++|+.++.
T Consensus 105 ~LgI~~d~ 112 (462)
T 3tqo_A 105 ALRVLSPD 112 (462)
T ss_dssp HHTCCCCS
T ss_pred HcCCCCCc
Confidence 99998764
No 55
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.81 E-value=0.043 Score=56.72 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=51.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHH--H-H-hccCcEEE-EEeccceecC--CC------------C-----------
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWI--A-L-QNSYETLF-FIVDLHAITL--PY------------D----------- 127 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~--~-l-Q~~~~~~i-~IaDlhA~t~--~~------------~----------- 127 (386)
..++.+|--|||.+||||...++..++ + + ..|+++.+ +-.|.|--.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 356667999999999999998885532 1 2 23677643 3344444111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 016603 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (386)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS~ 159 (386)
.+-..++...+.+++.++||+++ +|+||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 12234567788889999999987 458998
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=94.70 E-value=0.15 Score=52.56 Aligned_cols=75 Identities=5% Similarity=-0.048 Sum_probs=48.6
Q ss_pred CCceEEEe-eCCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEEeccc-e--ecC-----CCCH-HHHHHHHHHHHHHH
Q 016603 77 VKKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFIVDLH-A--ITL-----PYDT-QQLSKATRETAAIY 142 (386)
Q Consensus 77 ~~~~i~tG-i~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~IaDlh-A--~t~-----~~~~-~~i~~~~~~~~~~~ 142 (386)
+++.|-|. --++|.+||||.++.+.. +.+.+ .|++|.++-+..| . +.. ..++ +-..+++..+.+++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555555 368899999999886522 33333 3899877655444 2 221 2244 44556677888999
Q ss_pred HHcCCCCCC
Q 016603 143 LACGIDNSK 151 (386)
Q Consensus 143 lA~Gldp~k 151 (386)
.++|++.|.
T Consensus 89 ~~lgi~~D~ 97 (542)
T 3u1f_A 89 EQMDYSIDY 97 (542)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCccCc
Confidence 999999873
No 57
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=94.55 E-value=0.086 Score=55.64 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=27.4
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDl 119 (386)
|+|-=|+|.+|+||..+++ .-+.++.+ |++|+ .-|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 4788899999999998766 33444443 78876 467884
No 58
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=93.50 E-value=0.33 Score=50.34 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=47.6
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 016603 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~l 143 (386)
+..|.++ .-|||.+||||....+.. +.+++. |++|.+.. .|.|..-. ..++++ .++....+.+++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 355699999999876632 333332 88887544 44443321 124433 4455667888999
Q ss_pred HcCCCCCCcEEEEcc
Q 016603 144 ACGIDNSKASVFVQS 158 (386)
Q Consensus 144 A~Gldp~k~~i~~qS 158 (386)
++|++++. ++.-+
T Consensus 99 ~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 99 GFNISYDN--YHSTH 111 (560)
T ss_dssp HTTCCCSE--EEESS
T ss_pred HcCCCCCC--ceeCC
Confidence 99999883 44444
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=92.53 E-value=0.71 Score=47.98 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=50.0
Q ss_pred CCCCCCceEEEe-eCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHH-HHHHHHHHH
Q 016603 73 SSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRET 138 (386)
Q Consensus 73 ~~~~~~~~i~tG-i~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~t~-------~~~~~-~i~~~~~~~ 138 (386)
++..++..|.+. .-|||.+||||..+.+ .-+.++++ |++|.+ .-.|.|..-. ..+++ -+.+....+
T Consensus 22 ~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 22 MKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp --CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333344444333 3588999999998765 22445544 899865 4455554321 12443 344556678
Q ss_pred HHHHHHcCCCCCCcEEEEcc
Q 016603 139 AAIYLACGIDNSKASVFVQS 158 (386)
Q Consensus 139 ~~~~lA~Gldp~k~~i~~qS 158 (386)
.+++..+|+..+. ++.-+
T Consensus 102 ~~~~~~lgi~~D~--~~~t~ 119 (564)
T 3kfl_A 102 KQCFQEMNYDMNY--FIRTT 119 (564)
T ss_dssp HHHHHHTTCCCSE--EEETT
T ss_pred HHHHHHcCCCCCc--cccCC
Confidence 8889999999883 44444
No 60
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=91.64 E-value=0.64 Score=49.86 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=48.6
Q ss_pred CceEEEee-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-ccceecC-------CCCHHH-HHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIY 142 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~-~i--~~~~~lQ~--~~~~~i~Ia-DlhA~t~-------~~~~~~-i~~~~~~~~~~~ 142 (386)
++.|.+++ -|+|.+||||.++ .+ .-+.+++. |++|.+..+ |-|..-. ..++++ ..++...+.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566665 6789999999997 44 33555544 889876554 4443321 124433 445667788999
Q ss_pred HHcCCCCCC
Q 016603 143 LACGIDNSK 151 (386)
Q Consensus 143 lA~Gldp~k 151 (386)
.++|++.|.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 61
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=89.62 E-value=0.97 Score=46.22 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCCc
Q 016603 86 QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (386)
Q Consensus 86 ~PTG~lHLGnyl~~i~~--~~~lQ--~~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~Gldp~k~ 152 (386)
-|+|.+||||....+.. +.+++ .|++|.++. .|-|..-. ..++++ .+++...+.+++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 35799999999876522 33443 378876543 23222210 123333 34566778889999999887
Q ss_pred EEEEccc
Q 016603 153 SVFVQSH 159 (386)
Q Consensus 153 ~i~~qS~ 159 (386)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4566665
No 62
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=88.36 E-value=1.3 Score=44.85 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=46.1
Q ss_pred CceEEEeeCCC--CcchhhhHHHHHH--HHHHHhc--cCcEEEE--Eeccceec------CCCCHHH-HHHHHHHHHHHH
Q 016603 78 KKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAIT------LPYDTQQ-LSKATRETAAIY 142 (386)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnyl~~i~--~~~~lQ~--~~~~~i~--IaDlhA~t------~~~~~~~-i~~~~~~~~~~~ 142 (386)
+.++|.- .|| |.+||||...++. -+.++.+ |++|+++ +.|+-.-+ ...++++ ..+....+.+++
T Consensus 22 ~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 22 EVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4555543 566 9999999877652 2333332 7887664 34442111 0123333 334556788899
Q ss_pred HHcCCCCCCcEEEEcccc
Q 016603 143 LACGIDNSKASVFVQSHV 160 (386)
Q Consensus 143 lA~Gldp~k~~i~~qS~~ 160 (386)
.++|+.+.. .+..+|+.
T Consensus 101 ~~LgI~~~d-~~~r~t~~ 117 (461)
T 1li5_A 101 DALNILRPD-MEPRATHH 117 (461)
T ss_dssp HHTTCCCCS-BCCBGGGC
T ss_pred HHcCCCCCc-ccccccch
Confidence 999998632 24455553
No 63
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=87.62 E-value=0.22 Score=51.13 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=32.5
Q ss_pred ccceeecccchhHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCC
Q 016603 216 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (386)
Q Consensus 216 ~adivpvG~DQ~~h~e---laRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~ 292 (386)
-+|+...|.||..++. .++-++. | ++.|..++.. ..+ .. +| +|||||. +
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l-~~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWW-TK-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCC-EE-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--cce-ec-CC-ceecccc---C
Confidence 3689999999977542 2222221 2 2234444432 233 23 56 7999998 7
Q ss_pred CeeeccC
Q 016603 293 SRINLLD 299 (386)
Q Consensus 293 s~I~L~D 299 (386)
|.|...|
T Consensus 330 Nvi~p~~ 336 (542)
T 3u1f_A 330 NVFDPVE 336 (542)
T ss_dssp BCCCHHH
T ss_pred CCCChhH
Confidence 8886433
No 64
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=87.06 E-value=0.18 Score=51.81 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=32.6
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+.+|+..+|.||...+.+ -..|.-.. .| ++.|..++.. .+|.. +| +|||||. +|.
T Consensus 264 ~p~di~~~G~D~~~fh~~-~~~a~l~~--~g--------------~~~~~~v~~h--G~v~~--~G-~KMSKS~---GN~ 318 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTV-YWPAFLMS--AG--------------LPLPKRIFAH--GWLLN--RG-EKMSKSI---GNV 318 (524)
T ss_dssp CSCSEEEEEGGGHHHHHT-HHHHHHHH--HT--------------CCCCSCEEEE--CCEEE--CS-CSEETTT---EES
T ss_pred CCCeEEEEeechhHhHHH-HHHHHHHH--CC--------------CCCCcEEEEC--cEEEe--CC-cccCCcC---CCC
Confidence 358999999999853222 11221111 12 1224333221 23332 56 7999997 788
Q ss_pred eeccC
Q 016603 295 INLLD 299 (386)
Q Consensus 295 I~L~D 299 (386)
|.+.|
T Consensus 319 v~p~d 323 (524)
T 2x1l_A 319 VDPVN 323 (524)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 87644
No 65
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=85.85 E-value=0.24 Score=51.52 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=34.2
Q ss_pred cccceeecccchhHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~el---aRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~ 291 (386)
+.+|+.+.|.||..++.+ ++-.+ . | ++.|..++.. .++ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a--~----g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS--A----E--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH--T----T--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh--C----C--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999884322 22222 1 2 2335444432 345 33 67 6999998
Q ss_pred CCeeeccC
Q 016603 292 QSRINLLD 299 (386)
Q Consensus 292 ~s~I~L~D 299 (386)
+|.|.+.|
T Consensus 345 GNvV~p~d 352 (564)
T 3kfl_A 345 GNAFDPVE 352 (564)
T ss_dssp TCCCCHHH
T ss_pred CCCCCHHH
Confidence 78886544
No 66
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=85.16 E-value=0.19 Score=51.28 Aligned_cols=39 Identities=26% Similarity=0.547 Sum_probs=27.2
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEeccc
Q 016603 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDLH 120 (386)
Q Consensus 82 ~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~--i~IaDlh 120 (386)
|+.--|||.+|+||...++ .-+.++.+ |++|+ .-|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 4667889999999987765 22334433 78774 6888863
No 67
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=84.60 E-value=0.39 Score=52.10 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=40.1
Q ss_pred cccceeecccchhH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~-h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
+.+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 655543322211 221 1124444331 33332 66 7999998 78
Q ss_pred eeeccC-----CHHHHHHHhh
Q 016603 294 RINLLD-----PKDVIANKIK 309 (386)
Q Consensus 294 ~I~L~D-----spe~I~~KI~ 309 (386)
.|.+.| .++.++--+.
T Consensus 658 vv~p~dli~~yGaDalR~~ll 678 (810)
T 1wkb_A 658 VLNFIDAIEENGADVVRLYIM 678 (810)
T ss_dssp CCBHHHHHHHHCHHHHHHHHH
T ss_pred cCCHHHHHHHcChHHHHHHHH
Confidence 888654 4444444443
No 68
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=84.15 E-value=2.9 Score=45.94 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=46.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~l 143 (386)
++.+++++ -|||.+||||.+..+.. +.+++. |++|.+.. -|-|.+-. ..++ +-..+++..+.+++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 56677776 67899999999876522 334433 78887644 34444321 1233 334456677888999
Q ss_pred HcCCCCC
Q 016603 144 ACGIDNS 150 (386)
Q Consensus 144 A~Gldp~ 150 (386)
++|+..|
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998766
No 69
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.85 E-value=0.41 Score=47.84 Aligned_cols=81 Identities=14% Similarity=0.020 Sum_probs=47.5
Q ss_pred CceE-EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceec--C-----CCCHHH-HHHHHHHHHHHHH
Q 016603 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAIT--L-----PYDTQQ-LSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i-~tGi~PTG~lHLGnyl~~i--~~~~~lQ~--~~~~~i-~IaDlhA~t--~-----~~~~~~-i~~~~~~~~~~~l 143 (386)
+..+ ++|.=|.|.+||||....+ .-+.++++ |++|.+ .-.|.|..- . ..++.+ ..+....+.+++.
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3344 4555556999999987765 22333333 888865 445555321 0 123333 3445667888899
Q ss_pred HcCCC-CCCcEEEEcccc
Q 016603 144 ACGID-NSKASVFVQSHV 160 (386)
Q Consensus 144 A~Gld-p~k~~i~~qS~~ 160 (386)
++|+. ++ .++..|+.
T Consensus 119 ~Lgi~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 119 ALRVLPPH--DYVAATDA 134 (414)
T ss_dssp HTTCCCCS--EEEEGGGC
T ss_pred HcCCCCCc--ceecccch
Confidence 99998 65 34555553
No 70
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.75 E-value=4.1 Score=40.56 Aligned_cols=66 Identities=27% Similarity=0.252 Sum_probs=26.1
Q ss_pred hhhhhhcccceeecccchhH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccC
Q 016603 209 ASDILLYQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 287 (386)
Q Consensus 209 AADil~~~adivpvG~DQ~~-h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS 287 (386)
+...+--..|+.++|.|+.. |++...-...-+ +|.. +.+..+++. .+| .+ +| +|||||
T Consensus 237 ~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~---~g~~-------------~~~~~~~h~--g~v-~~-~G-~KMSKS 295 (414)
T 3c8z_A 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESV---TGER-------------RFARHYVHT--GMI-GW-DG-HKMSKS 295 (414)
T ss_dssp HHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHH---HCCS-------------CSEEEEEEE--CCB-C-----------
T ss_pred HHHhcCCCceEEEeccccccHHHHHHHHHHHHh---cCCC-------------CcCeEEEEc--CEE-ec-CC-eEcccc
Confidence 33333335789999999877 666554433332 2321 112223321 122 33 66 699999
Q ss_pred CCCCCCeeecc
Q 016603 288 APSDQSRINLL 298 (386)
Q Consensus 288 ~p~~~s~I~L~ 298 (386)
. +|.|.+.
T Consensus 296 ~---GN~v~~~ 303 (414)
T 3c8z_A 296 R---GNLVLVS 303 (414)
T ss_dssp -------CBHH
T ss_pred c---CCcCCHH
Confidence 7 7888764
No 71
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=82.35 E-value=0.53 Score=52.21 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=40.3
Q ss_pred cccceeecccchhH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~-h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
+-+|+..+|.||.. |+...+-...-+ ++. -+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 46899999999964 555543222211 221 1124444432 33432 66 7999998 78
Q ss_pred eeeccC-----CHHHHHHHhh
Q 016603 294 RINLLD-----PKDVIANKIK 309 (386)
Q Consensus 294 ~I~L~D-----spe~I~~KI~ 309 (386)
.|...| .++.++-=+.
T Consensus 658 vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHH
Confidence 887654 4555554453
No 72
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=81.72 E-value=6.6 Score=40.36 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=44.0
Q ss_pred CceEEE-eeCCCCcchhhhHHHHH--HHHHHHh--ccCcEEEE--Eecc---------c--eecC-----CCCH-HHHHH
Q 016603 78 KKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQ--NSYETLFF--IVDL---------H--AITL-----PYDT-QQLSK 133 (386)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGnyl~~i--~~~~~lQ--~~~~~~i~--IaDl---------h--A~t~-----~~~~-~~i~~ 133 (386)
+.++|+ |-=|.|.+||||..+.+ .-+.+.+ .|++|.+. |.|+ | .++. ..++ +...+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 455554 54444999999987754 1122332 28998876 3444 2 2222 1244 34455
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 016603 134 ATRETAAIYLACGIDNSK 151 (386)
Q Consensus 134 ~~~~~~~~~lA~Gldp~k 151 (386)
++..+.+++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 677888999999998775
No 73
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=81.64 E-value=0.66 Score=51.20 Aligned_cols=59 Identities=31% Similarity=0.303 Sum_probs=34.8
Q ss_pred hcccceeecccchh---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCcccccCCC
Q 016603 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 289 (386)
Q Consensus 214 ~~~adivpvG~DQ~---~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~~l~~~~~~~lpgL~dG~~KMSKS~p 289 (386)
.+-+|+...|.||. .|-.+...++- +|. .| ..++.. .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~---------------~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGV---------------SPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSS---------------CSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCC---------------CcccceeEe--eeEEcC-CC-cCccccc-
Confidence 35689999999997 34444444431 232 13 223321 345433 56 7999998
Q ss_pred CCCCeeeccC
Q 016603 290 SDQSRINLLD 299 (386)
Q Consensus 290 ~~~s~I~L~D 299 (386)
+|.|...|
T Consensus 601 --GNvV~P~d 608 (917)
T 1ffy_A 601 --GNVIVPDQ 608 (917)
T ss_dssp --SCCCCHHH
T ss_pred --CCcCChHH
Confidence 78886543
No 74
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.80 E-value=0.85 Score=46.31 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=43.5
Q ss_pred Hhhhhhhcccceeecccchh-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCccccc
Q 016603 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (386)
Q Consensus 208 QAADil~~~adivpvG~DQ~-~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSK 286 (386)
|+...+--..|+..+|.|+. +|++ .++|..... +|. +.|..+++. .+|. + +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~--~~~aq~~a~-~g~--------------~~~~~~~h~--g~v~-~-~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHE--NEIAQSTCA-HDG--------------QYVNYWMHS--GMVM-V-DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHH--HHHHHHHHH-SSS--------------CCEEEECCB--CCEE-E-TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHH--HHHHHHHHh-cCC--------------CCCcEEEEe--eEEE-E-CC-eEccc
Confidence 33333333578999999976 4543 334443321 232 124334432 2332 2 56 69999
Q ss_pred CCCCCCCeeeccC-----CHHHHHHHhhh
Q 016603 287 SAPSDQSRINLLD-----PKDVIANKIKR 310 (386)
Q Consensus 287 S~p~~~s~I~L~D-----spe~I~~KI~k 310 (386)
|. +|.|.+.| +++.++--+.+
T Consensus 270 S~---GN~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 270 SL---GNFFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp GG---TCCCBHHHHHTTSCHHHHHHHHHS
T ss_pred cC---CCccChhHHhhhCCHHHHHHHHHc
Confidence 97 78887754 56666655554
No 75
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=79.85 E-value=0.81 Score=49.72 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=37.8
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCe
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~ 294 (386)
+-+|+...|.||.... +.+-++...- .+|.. .+..++.. ..+... +| +|||||. +|.
T Consensus 543 ~P~dl~~~G~D~~r~w-~~~~~~~~~~-~~~~~--------------pf~~v~~h--g~vl~~-~G-~KMSKS~---GNv 599 (821)
T 1ile_A 543 FPADFIAEGIDQTRGW-FNSLHQLGVM-LFGSI--------------AFKNVICH--GLILDE-KG-QKMSKSK---GNV 599 (821)
T ss_dssp SSBSBEEEEGGGGGTH-HHHHHHHHHH-HHSSC--------------SBSEEEEE--CCEECT-TS-SCCCTTT---TCC
T ss_pred CCcccccchhhhhccH-HHHHHHHHHH-hcCCC--------------CcceEEEE--eeEECC-CC-CCCCccC---CCC
Confidence 4689999999997421 2232322211 01211 12333221 334443 66 7999998 788
Q ss_pred eeccC-----CHHHHHHHhhh
Q 016603 295 INLLD-----PKDVIANKIKR 310 (386)
Q Consensus 295 I~L~D-----spe~I~~KI~k 310 (386)
|.+.| .+|.++-=+..
T Consensus 600 V~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 600 VDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp CCHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHhCHHHHHHHHHh
Confidence 87543 44444444443
No 76
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=79.14 E-value=0.7 Score=47.83 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=18.7
Q ss_pred CCCcccccCCCCCCCeeeccC-----CHHHHHHHhhhc
Q 016603 279 DGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (386)
Q Consensus 279 dG~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~kA 311 (386)
+| +|||||. +|.|.+.| .++.++--+.+.
T Consensus 342 ~G-~KMSKS~---GNvv~p~d~i~~~GaDalR~~ll~~ 375 (560)
T 3h99_A 342 NG-AKMSKSR---GTFIKASTWLNHFDADSLRYYYTAK 375 (560)
T ss_dssp TT-EECCTTT---TCCCBHHHHHHHSCHHHHHHHHHHH
T ss_pred CC-eeccccC---CCcCCHHHHHHHcCcHHHHHHHHHh
Confidence 66 6999998 78887644 344444444443
No 77
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.72 E-value=3.4 Score=45.20 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=43.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceec------------C--CCCH---------
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAIT------------L--PYDT--------- 128 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t------------~--~~~~--------- 128 (386)
++.|++|. -|||.+|+||.+..+.+ +.+++. |++|.+.. -|-|.+- + +.+.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 46666664 56899999999875522 444443 88887655 4555541 1 1111
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCC
Q 016603 129 -QQLSKATRETAAIYLACGIDNS 150 (386)
Q Consensus 129 -~~i~~~~~~~~~~~lA~Gldp~ 150 (386)
+-..++...+..++..+|+..|
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 1134455667788888886443
No 78
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.14 E-value=0.76 Score=50.36 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=38.3
Q ss_pred cccceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCcccccCCCCCCC
Q 016603 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (386)
Q Consensus 215 ~~adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P-~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s 293 (386)
+-+|+...|.||.. +=++|.++..... .|. .| ..++.. ..+... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~~-~g~---------------~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYHF-MGE---------------RPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHHH-SSS---------------CSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHHh-cCC---------------CcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 56899999999975 3457777665432 232 13 222221 345444 67 7999998 78
Q ss_pred eeeccC
Q 016603 294 RINLLD 299 (386)
Q Consensus 294 ~I~L~D 299 (386)
.|...|
T Consensus 536 vIdP~d 541 (862)
T 1gax_A 536 VIDPLE 541 (862)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 887543
No 79
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=74.92 E-value=1.4 Score=45.44 Aligned_cols=65 Identities=22% Similarity=0.114 Sum_probs=27.6
Q ss_pred Hhhhhhhcccceeecccch-hHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCccccc
Q 016603 208 MASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (386)
Q Consensus 208 QAADil~~~adivpvG~DQ-~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSK 286 (386)
|+...+--..|+-.+|.|. .+|++.-.-.+.-.. |... ....++. .+| .. +| +||||
T Consensus 245 m~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~---g~~~--------------~~~w~H~--g~v-~~-~G-~KMSK 302 (501)
T 3sp1_A 245 MNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFL---NKKW--------------CDVFVHG--EFL-IM-DY-NKMSK 302 (501)
T ss_dssp HHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHH---TSCC--------------CSEEEEE--CCE-EC-C-------
T ss_pred HHHHHcCCCceEEeeccccccchHHHHHHHHHHcc---CCCC--------------CeEEEEe--eeE-ee-CC-eEccc
Confidence 4444444457999999996 456665433333322 2210 1222221 233 23 67 79999
Q ss_pred CCCCCCCeeec
Q 016603 287 SAPSDQSRINL 297 (386)
Q Consensus 287 S~p~~~s~I~L 297 (386)
|. +|.|.+
T Consensus 303 Sl---GN~it~ 310 (501)
T 3sp1_A 303 SR---GNFITV 310 (501)
T ss_dssp -------CCCH
T ss_pred cC---CCcCCH
Confidence 98 687765
No 80
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=72.20 E-value=5.4 Score=43.71 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL 143 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~Ia-DlhA~t~-------~~~~-~~i~~~~~~~~~~~l 143 (386)
++.+++|+ =|+|.+||||.+..+.. +.+++. |++|.+..+ |-|.+-. ..++ +-..+++..+.+++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777773 45699999999875522 334433 788875443 3333311 1133 334556677888899
Q ss_pred HcCCCCC
Q 016603 144 ACGIDNS 150 (386)
Q Consensus 144 A~Gldp~ 150 (386)
++|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9997554
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=70.45 E-value=2.5 Score=46.37 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.9
Q ss_pred cccceeecccch-hHHHHHHHHHHHH
Q 016603 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (386)
Q Consensus 215 ~~adivpvG~DQ-~~h~elaRdia~k 239 (386)
+-+|+-.+|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777776653
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=69.74 E-value=5.1 Score=43.30 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=27.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
++.|..|. -|||.+||||.+..+.. +.+++. |++|.+.. -|.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 34455544 46799999999886522 444443 78887643 344443
No 83
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=69.09 E-value=1.6 Score=44.95 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=35.0
Q ss_pred hcccceeecccchhH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCcccccCCC
Q 016603 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAP 289 (386)
Q Consensus 214 ~~~adivpvG~DQ~~---h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~-dG~~KMSKS~p 289 (386)
.+..++-++|.|+.. ......+++.. .+| .+.|..++. .+|.. . +| +|||||.
T Consensus 228 ~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~---~~i~~-~g~g-~KmSKs~- 284 (523)
T 1irx_A 228 HFGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMY---EFVGI-KGQK-GKMSGSK- 284 (523)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEE---CCEEE-SCC----------
T ss_pred HcCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEE---EEEEe-CCCC-CCCCCcC-
Confidence 345566688999877 23344566631 234 234654444 33433 2 34 7999997
Q ss_pred CCCCeeeccC-----CHHHHHHHhhh
Q 016603 290 SDQSRINLLD-----PKDVIANKIKR 310 (386)
Q Consensus 290 ~~~s~I~L~D-----spe~I~~KI~k 310 (386)
+|.|.+.| .|+.++.-+.+
T Consensus 285 --Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 --GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp ---CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred --CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 67776544 67777777765
No 84
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=68.85 E-value=3.4 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.5
Q ss_pred cccceeecccch-hHHHHHHHHHHHHH
Q 016603 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (386)
Q Consensus 215 ~~adivpvG~DQ-~~h~elaRdia~k~ 240 (386)
+-+|+-.+|.|| .-|+-.+|-+..-+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 468999999999 56888888665544
No 85
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=61.28 E-value=4.9 Score=40.81 Aligned_cols=73 Identities=26% Similarity=0.233 Sum_probs=40.9
Q ss_pred ccchhhHHHhhhhhhc------cccee--ecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--cccCC
Q 016603 200 ALLTYPVLMASDILLY------QSDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPP 269 (386)
Q Consensus 200 g~l~YP~LQAADil~~------~adiv--pvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~--~l~~~ 269 (386)
|..+| .+.||-.. +.|.+ .+|.||..|+.--..+++.++.. .|. .+..
T Consensus 215 G~~~Y---~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~------------------~~~~~h~~~- 272 (464)
T 3fnr_A 215 GRGTY---LAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFD------------------SNNLEIILA- 272 (464)
T ss_dssp SCBCH---HHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCC------------------GGGEEEEEE-
T ss_pred Cceeh---hhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCC------------------ccceEEEEe-
Confidence 55555 45555432 35644 79999999998777777776521 121 1222
Q ss_pred CCcccccCCCCC-cccccCCCCCCCeeeccC
Q 016603 270 AGARVMSLTDGL-SKMSKSAPSDQSRINLLD 299 (386)
Q Consensus 270 ~~~~lpgL~dG~-~KMSKS~p~~~s~I~L~D 299 (386)
.++.-..||. .|||||. +|.|.+.|
T Consensus 273 --g~V~l~~dG~~~KMSKr~---Gn~v~l~d 298 (464)
T 3fnr_A 273 --QMVSLLKDGEPYKMSKRA---GNFILMSD 298 (464)
T ss_dssp --CCEEEEETTEECCC---C---CSSCBHHH
T ss_pred --eeEEecCCCcccCCcCcC---CCCCCHHH
Confidence 2331113664 5999997 78888755
No 86
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=58.14 E-value=4.5 Score=43.87 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=29.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~ 122 (386)
++.++.|. -|||.+||||.++.+.+ +.+++. |++|.+.. -|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 56666766 78899999999875522 334433 88876544 455544
No 87
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=55.06 E-value=41 Score=31.48 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=57.4
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHHH
Q 016603 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYLA 144 (386)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~~~~lA 144 (386)
...++.||-|=-.-|=+.++-.+..|. +.++ +|.|+++|.++--+ ..++.+.++.+ +.+...|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999998888999998888995 5655 58899999755432 33444333322 345566777
Q ss_pred cCCCCCCcEEEEcccchh
Q 016603 145 CGIDNSKASVFVQSHVRA 162 (386)
Q Consensus 145 ~Gldp~k~~i~~qS~~~~ 162 (386)
+|++.+ .++.=||+..
T Consensus 107 ~g~~~~--~v~~~Sd~~~ 122 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFAN 122 (257)
T ss_dssp HTCCTT--CEEETTTTTT
T ss_pred cCCCcc--cceeHHHhhc
Confidence 799888 5776688753
No 88
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=51.29 E-value=5.4 Score=43.92 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=45.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC----------CC--CHHHH--------
Q 016603 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL----------PY--DTQQL-------- 131 (386)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~----------~~--~~~~i-------- 131 (386)
++.+.+|. -|||.+||||.+..+.+ +.+.+. |+++.+.. -|-|.+-. +. ..++.
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 56777777 67899999999876522 444443 88876544 46665521 11 12322
Q ss_pred HHHHHHHHHHHHHcCC--CCCC
Q 016603 132 SKATRETAAIYLACGI--DNSK 151 (386)
Q Consensus 132 ~~~~~~~~~~~lA~Gl--dp~k 151 (386)
.+++....+++..+|+ |.++
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHhCeEEccCC
Confidence 2334456677788888 6665
No 89
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=48.50 E-value=6 Score=43.77 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE
Q 016603 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF 115 (386)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnyl~~i~~--~~~lQ~--~~~~~i~ 115 (386)
.++.++.|. -|||.+|+||.+..+.+ +.+++. |++|.+.
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~ 77 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence 357777777 56899999999875522 334443 7887653
No 90
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=40.91 E-value=5.2 Score=42.81 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.7
Q ss_pred ccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccC-----CHHHHHHHhhhc
Q 016603 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (386)
Q Consensus 260 ~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~kA 311 (386)
++.|..++.. .+|.- +| +|||||. +|.|+..| .++.++--+.+.
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 3456555542 33432 66 7999998 78998654 566666666554
No 91
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=39.98 E-value=6.7 Score=39.77 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=3.6
Q ss_pred eecccchhHHHHH
Q 016603 220 VPVGEDQKQHLEL 232 (386)
Q Consensus 220 vpvG~DQ~~h~el 232 (386)
||||.||++|.|-
T Consensus 237 vp~~~d~~~~~~~ 249 (451)
T 3foc_A 237 VPLPVGTGNEDAA 249 (451)
T ss_dssp CBCC---------
T ss_pred cccccccccchhh
Confidence 6999999999543
No 92
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=37.94 E-value=55 Score=30.43 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHH
Q 016603 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (386)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~~~~l 143 (386)
+...++.||-|=-.-|=+.++-.+..|. +..+ +|-|+++|.+.--+ ..++.+.++.+ +.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998888899998888995 5655 58899999854322 34443333322 34556777
Q ss_pred HcCCCCCCcEEEEcccchh
Q 016603 144 ACGIDNSKASVFVQSHVRA 162 (386)
Q Consensus 144 A~Gldp~k~~i~~qS~~~~ 162 (386)
++|.+.++..+..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 8899988877777687643
No 93
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=30.55 E-value=51 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=31.0
Q ss_pred CCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHH
Q 016603 326 RPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI 368 (386)
Q Consensus 326 ~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~ 368 (386)
|-.+..++.++. .|.+.+||.++|-++...++..+++-+..
T Consensus 51 RI~V~~Il~~l~--~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~ 91 (106)
T 2ga1_A 51 RIPVWTLVAYRQ--QGAPDKELLANYPGLTAEDLSAAWHYYEQ 91 (106)
T ss_dssp CCBHHHHHHHHH--TTCCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHH--cCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 333444555443 68999999999999999999998876653
No 94
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=26.22 E-value=2e+02 Score=23.55 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHhccC---cEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 016603 98 GAIKNWIALQNSY---ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (386)
Q Consensus 98 ~~i~~~~~lQ~~~---~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i 154 (386)
..+..+...-..+ ...|.|.....-++ .++++.-.+++......|...|+++++..+
T Consensus 39 ~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~ 100 (148)
T 4erh_A 39 QALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISA 100 (148)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 3445554433323 34455544333333 235667777788888888888999998654
Done!