RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016603
(386 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 251 bits (641), Expect = 8e-82
Identities = 139/297 (46%), Positives = 184/297 (61%), Gaps = 14/297 (4%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS + G
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N R G
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQ 284
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 176 bits (447), Expect = 4e-52
Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 48/319 (15%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D Q
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
E A +ACG D +K +F + I Q K
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189
Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
P L +L +KMS S P S I L D
Sbjct: 250 K------------------PALLHST---FFPALQGAQTKMSASDP--NSSIFLTDTAKQ 286
Query: 304 IANKIKRCKTDSSAGLEFDNLERPECN-----NLLSIYQLISGKTKGEVAEECQN--MNW 356
I K+ + ++ + + + L ++ ++ + M
Sbjct: 287 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLT 346
Query: 357 GTFKPLLTDALIEHLHPIQ 375
G K L + L + Q
Sbjct: 347 GELKKALIEVLQPLIAEHQ 365
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 164 bits (415), Expect = 4e-48
Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 45/317 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ +I G TG H+ ++ K L+ E DLHA R
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91
Query: 138 TAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
+ + G+ K + + E + + + + + + K
Sbjct: 92 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR------ 204
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
+ + GL+ S+ ++S+I+LLD K+ + K+K+
Sbjct: 205 -------------------VHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKA 245
Query: 312 KTDS-----------SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGT 358
+ + F + ++ ++ ++ G
Sbjct: 246 FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 305
Query: 359 FKPLLTDALIEHLHPIQ 375
K + AL + L PI+
Sbjct: 306 LKNSVEVALNKLLDPIR 322
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 113 bits (283), Expect = 2e-29
Identities = 58/310 (18%), Positives = 109/310 (35%), Gaps = 46/310 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 135
+K G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
++ A G+ + + ++ L+ T + + ++ E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
N VA + YP++ +DI D G +Q++ L REL +
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL------ 196
Query: 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315
GL K + S + I + D + I KIK+ +
Sbjct: 197 -----------------------TGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPA 233
Query: 316 SA--------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTD 365
++ ++ + E+ +N ++ K + +
Sbjct: 234 GVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAE 293
Query: 366 ALIEHLHPIQ 375
LI+ L PI+
Sbjct: 294 ELIKILEPIR 303
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 82.7 bits (203), Expect = 4e-18
Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ G PT +HLG+ + K + ++ + I D + + ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 137 ETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 185
+ + S + ++ + + + +
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152
Query: 186 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.6 bits (63), Expect = 0.95
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 339 ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 373
+ + + + +NM W L ++ L
Sbjct: 189 VVAPSGDNITHKSENMKWYNGPTLE--EYLDQLEL 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 78 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 104
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.7 bits (58), Expect = 4.6
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d2o9xa1 a.184.1.1 (A:1-153) Reductase assembly protein AF0173
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 153
Score = 25.7 bits (56), Expect = 6.8
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 105 ALQNSYETLFFIVDLHAITLPY-----DTQQLSKATRETAAIYLACGID 148
ALQ Y +LF PY + KA+ A +Y G++
Sbjct: 46 ALQVEYTSLFISSHPSVPCPPYQSYFEEGSVYGKASLRAAELYSKYGLN 94
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 25.9 bits (57), Expect = 8.1
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRE-----TAAIYL 143
L N W+ ++ + + + I PY ++++ + T ++L
Sbjct: 13 GARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHL 72
Query: 144 AC 145
Sbjct: 73 MY 74
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 25.9 bits (56), Expect = 8.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
PTG H+G A+ N+
Sbjct: 10 PTGDPHVGTAYIALFNYA 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,368,001
Number of extensions: 60498
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 11
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)