BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016604
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 53/325 (16%)
Query: 47 YTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 106
YT+ S +G + ED++ + G + + V I + +L G+ +G++GL
Sbjct: 72 YTQG-SWTGFVGEDLVTIPKGFNTSFL------VNIATIFESENFFLPGIKWNGILGLAY 124
Query: 107 GEISVPS---------LLAKAGLIRNSFSMCF---------DKDDSGRIFFGDQGPATQQ 148
++ PS L+ +A I N FSM + G + G P+ +
Sbjct: 125 ATLAKPSSSLETFFDSLVTQAN-IPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYK 183
Query: 149 STSFLASNGKYITYIIGVETCCIGSS-----CLKQTSFKAIVDSGSSFTFLPKEVYETIA 203
+ + Y I + IG C + + KAIVDSG++ LP++V++ +
Sbjct: 184 GDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV 243
Query: 204 AEFDRQVNDTITSFEGYPWK----CCYKSSSQRLPKLP--SVKLMXXXXXXXXXXXXXXX 257
R I F W C+ +S P S+ L
Sbjct: 244 EAVARA--SLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQ 301
Query: 258 IYGTQVVTG-------FCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDL 310
+Y Q + G + I P + IG M G+ V+FDR ++G++ S C ++
Sbjct: 302 LY-IQPMMGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
Query: 311 NDGTKSPLTPGP----GTPSNPLPA 331
S ++ GP SN +PA
Sbjct: 360 AGAAVSEIS-GPFSTEDVASNCVPA 383
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 34/225 (15%)
Query: 99 DGLIGLGLGEISV-------PSLLAKAGLIRNSFSMCFDKDDS---GRIFFGDQGPATQQ 148
DG++G+G +V +L++ L FS+ +++ G + G P Q
Sbjct: 122 DGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQ 181
Query: 149 STSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSFTFLP----KEVYETIA 203
S K ++ I ++ +GSS L + + +VD+GSSF P K + + +
Sbjct: 182 GDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALG 241
Query: 204 AEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMXXXXXXXXXXXXXXXIYGTQ- 262
A+ ++++++ Y S ++P LP + Y +
Sbjct: 242 AK-EKRLHE-------------YVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRR 287
Query: 263 ----VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWS 303
V + I P G + +G F+ + FDR N ++G++
Sbjct: 288 DKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFA 332
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 55/282 (19%)
Query: 13 ASSTSKHLSCSHRLCDLGTS-----CQNPKQP------CPYTMDYYTENTSSSGLLVEDI 61
SST + + C C L S C N +P C + NT++ G + ED+
Sbjct: 55 VSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDV 114
Query: 62 LHLISG-GDNALKNSVQASVIIGCGMKQSGGYL-DGVAPDGLIGLGLGEISVPSLLAKAG 119
+ + S G ++ + I C L GV G+ GLG I++PS A A
Sbjct: 115 VSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVV--GMAGLGRTRIALPSQFASAF 172
Query: 120 LIRNSFSMCFDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNG 157
+ F+MC S I FG+ P T STS ++ G
Sbjct: 173 SFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG 231
Query: 158 K-YITYIIGVETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEF 206
+ + Y IGV++ I S + TS +I +G + +T L +Y+ + F
Sbjct: 232 EPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF 291
Query: 207 DRQ-VNDTITSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 242
++ IT P+ C+ + S RL P +PS+ L+
Sbjct: 292 IKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 55/282 (19%)
Query: 13 ASSTSKHLSCSHRLCDLGTS-----CQNPKQP------CPYTMDYYTENTSSSGLLVEDI 61
SST + + C C L S C N +P C + NT++ G + ED+
Sbjct: 55 VSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDV 114
Query: 62 LHLISG-GDNALKNSVQASVIIGCGMKQSGGYL-DGVAPDGLIGLGLGEISVPSLLAKAG 119
+ + S G ++ + I C L GV G+ GLG I++PS A A
Sbjct: 115 VSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVV--GMAGLGRTRIALPSQFASAF 172
Query: 120 LIRNSFSMCFDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNG 157
+ F+MC S I FG+ P T STS ++ G
Sbjct: 173 SFKRKFAMCLSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG 231
Query: 158 K-YITYIIGVETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEF 206
+ + Y IGV++ I S + TS +I +G + +T L +Y+ + F
Sbjct: 232 EPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF 291
Query: 207 DRQ-VNDTITSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 242
++ IT P+ C+ + S RL P +PS+ L+
Sbjct: 292 IKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 56/218 (25%)
Query: 9 YSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGG 68
Y PS SS S+ L+ P+++ Y + +SS G L +D + G
Sbjct: 65 YDPSGSSASQDLNT------------------PFSIGY-GDGSSSQGTLYKDTVGF---G 102
Query: 69 DNALKNSVQASV--------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKA 118
++KN V A V I+G G K ++GG D +VP L K
Sbjct: 103 GVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQ 147
Query: 119 GLI-RNSFSMCFDKDDS--GRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIG 172
G+I +N++S+ + DS G+I FG A + S S +A ++ + + +G + +
Sbjct: 148 GVIAKNAYSLYLNSPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVS 204
Query: 173 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQV 210
+ + ++DSG++ T+L +++ + I F+ ++
Sbjct: 205 GKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKL 242
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 54/217 (24%)
Query: 9 YSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGG 68
Y PS SS S+ L+ ++ Y + +SS G L +D + G
Sbjct: 65 YDPSGSSASQDLNTPFKIG-------------------YGDGSSSQGTLYKDTVGF---G 102
Query: 69 DNALKNSVQASV--------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKA 118
++KN V A V I+G G K ++GG D +VP L K
Sbjct: 103 GVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQ 147
Query: 119 GLI-RNSFSMCFDKDDS--GRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETCCIGS 173
G+I +N++S+ + D+ G+I FG D + + ++ + + +G + +
Sbjct: 148 GVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLG--SVEVSG 205
Query: 174 SCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQV 210
+ + ++DSG++ T+L +++ + I F+ ++
Sbjct: 206 KTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKL 242
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E A +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVASIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 98/257 (38%), Gaps = 32/257 (12%)
Query: 92 YLDGVAPDGLIGLGLGEISVP--SL------LAKAGLIRNSFSMCFDKDDSGRIFFGDQG 143
+++G +G++GL EI+ P SL L K + N FS+ S I D
Sbjct: 115 FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGGGSMIIGGIDHS 174
Query: 144 PAT-QQSTSFLASNGKYITYIIGVETCC--IGSSCLKQTSFKAIVDSGSSFTFLPKEVYE 200
T + + Y I+ VE + C + K+IVDSG++ LPK+V+E
Sbjct: 175 LYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 234
Query: 201 TIAAEFDRQVNDTITSFEGYP---WK----CCYKSSSQRLPKLP--SVKLMXXXXXXXXX 251
+S E +P W C+++ + P S+ LM
Sbjct: 235 AAVKSIK-----AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 289
Query: 252 XXXXXXIYGTQV-----VTGFCLAIQPVDGDIGTI-GQNFMTGYRVVFDRENLKLGWSHS 305
Y V C GT+ G M G+ VVFDR ++G++ S
Sbjct: 290 ITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 349
Query: 306 NCQDLNDGTKSPLTPGP 322
C ++D ++ GP
Sbjct: 350 ACH-VHDEFRTAAVEGP 365
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 99 DGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDK--DDSGRIFFGDQGPATQQ-------- 148
G+ GLG IS+P+ LA ++ F+ C + G I FGD +Q
Sbjct: 156 QGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFH 215
Query: 149 STSF----LASNGKYITYIIGVETCC--------IGSSCLKQTSFKAIVDSGSSFTFLPK 196
+F + G+Y + + I S+ + TS ++ + + L +
Sbjct: 216 DLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQ 275
Query: 197 EVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLM 242
VY+ F +Q+ P+ C+ S+ ++ PSV L+
Sbjct: 276 SVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN--KINAYPSVDLV 319
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 279 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 333
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 334 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 393
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 394 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 435
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 280 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 334
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 335 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 394
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 436
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 280 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 334
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 335 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 394
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 395 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 436
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 240 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 294
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 295 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 354
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 355 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 396
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 311
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 312 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 371
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 413
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 292
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 293 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 352
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 394
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 235 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 289
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 290 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 349
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 350 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 391
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 224 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 278
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 279 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 338
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 339 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 380
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 311
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 312 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 371
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 372 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 413
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 243 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 297
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 298 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 357
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 358 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 399
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 287
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 288 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 347
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 348 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 389
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 290
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 291 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 350
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 351 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 392
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 226 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 280
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 281 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 340
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 382
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 226 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 280
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 281 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 340
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 341 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 382
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 234 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 288
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 289 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 348
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 349 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 390
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 277
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 278 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 337
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 338 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 379
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 222 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 276
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 277 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 336
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 337 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 378
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 292
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 293 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 352
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 353 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 394
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 217 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 271
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 272 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 331
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 332 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 373
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 274
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 275 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 334
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 376
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 272
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 273 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 332
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 374
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 274
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 275 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 334
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 335 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 376
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 275
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 276 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 335
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 336 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 377
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 272
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 273 AGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 332
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 333 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 374
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG++ LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 -IGQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 CMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 175 CLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP---WK----CCYK 227
C + K+IVDSG + LPK+V+E +S E +P W C++
Sbjct: 237 CKEYNYDKSIVDSGCTNLRLPKKVFEAAVKSIK-----AASSTEKFPDGFWLGEQLVCWQ 291
Query: 228 SSSQRLPKLP--SVKLMXXXXXXXXXXXXXXXIYGTQV-----VTGFCLAIQPVDGDIGT 280
+ + P S+ LM Y V C GT
Sbjct: 292 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT 351
Query: 281 I-GQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLTPGP 322
+ G M G+ VVFDR ++G++ S C ++D ++ GP
Sbjct: 352 VMGAVIMEGFYVVFDRARKRIGFAVSACH-VHDEFRTAAVEGP 393
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 27 CDLGTSCQNPKQPCPYTMD------YYTENTSSSGLLVEDILHLISGGDNALKNSVQASV 80
C G + +P Q Y D Y + +S+SG+L +D ++L G +K
Sbjct: 51 CGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNL---GGLLIKGQT---- 103
Query: 81 IIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLIRNSFSMCFDKD 132
I +++ + G DGL+GLG I+ + +L+++ + R F + K
Sbjct: 104 -IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK- 160
Query: 133 DSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCCIGSSCLKQTSFKAIVD 186
+ G+ ST F S + + I V+ +G+S + +SF I+D
Sbjct: 161 -AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVA-SSFDGILD 218
Query: 187 SGSSFTFLPKEVYETIAAEF 206
+G++ LP + ++A +
Sbjct: 219 TGTTLLILPNNIAASVARAY 238
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 100 GLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGD---QGPATQQS---TSFL 153
G+ GL +++PS +A A + N F +C G FG P QS T +
Sbjct: 141 GVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLV 200
Query: 154 ASNGKYITYI----IGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQ 209
A G YI I VE + S + ++ + + L ++VY + F +
Sbjct: 201 AKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKA 260
Query: 210 V 210
+
Sbjct: 261 L 261
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 261 TQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 305
TQ ++GF + G + +G FM Y VFD NL +G++ +
Sbjct: 42 TQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEA 86
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 81 IIGCGMKQSGGYLDGVAPDGLIGLGLGEISV-------PSLLAKAGLIRNSFSMCFDKDD 133
+ G KQ G DG++G+ ISV +L+ + + +N FS +D
Sbjct: 9 VFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDP 68
Query: 134 SGR-----IFFGDQGPATQQSTSFLASNGK--YITYIIGVETCCIGSSCLKQTSFKAIVD 186
+ + G + S S+L K + ++ VE + C + +AIVD
Sbjct: 69 DAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLC--KEGCEAIVD 126
Query: 187 SGSSFTFLP----KEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLM 242
+G+S P +E+ + I A + +G C K S+ LP++ L
Sbjct: 127 TGTSLMVGPVDEVRELQKAIGA---------VPLIQGEYMIPCEKVST-----LPAITL- 171
Query: 243 XXXXXXXXXXXXXXXIYGTQVVTGFCLA------IQPVDGDIGTIGQNFMTGYRVVFDRE 296
+ +Q CL+ I P G + +G F+ Y VFDR+
Sbjct: 172 KLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRD 231
Query: 297 NLKLGWSHS 305
N ++G++ +
Sbjct: 232 NNRVGFAEA 240
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 41/216 (18%)
Query: 17 SKHLSCSHRLCDLGTSC------QNPKQPCPYTMD------YYTENTSSSGLLVEDILHL 64
S L + LC T+C +P Q Y D Y + +S+SG+L +D ++L
Sbjct: 38 SSDLWIASTLC---TNCGSRQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNL 94
Query: 65 ISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLA 116
G +K I +++ + G DGL+GLG I+ + +L++
Sbjct: 95 ---GGLLIKGQT-----IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLIS 145
Query: 117 KAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCC 170
+ + R F + K + G+ ST F S + + I V+
Sbjct: 146 QGLISRPIFGVYLGK--AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRAT 203
Query: 171 IGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEF 206
+G+S + +SF I+D+G++ LP + ++A +
Sbjct: 204 VGTSTVA-SSFDGILDTGTTLLILPNNIAASVARAY 238
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 11 PSASSTSKHLSCSHRLCDLGTSCQNPKQPCPY-TMDYYTENTSSSGLLVEDILH 63
PS S KHL C L L + Q P CP +D EN + S V+DIL
Sbjct: 262 PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISE-FVDDILQ 314
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 33/134 (24%)
Query: 98 PDGLIGLGL------GEI-SVPSLLAKAGLI-RNSFSMCFDKDDS--GRIFFGDQGPATQ 147
P G++G+G G+ +VP L G+I +N++S+ + ++ G+I FG A
Sbjct: 120 PQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNAATGQIIFGGVDKA-- 177
Query: 148 QSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAI-----------VDSGSSFTFLPK 196
KY +I V + S KA+ +DSG++ T+L +
Sbjct: 178 ----------KYSGSLIAVPVTSDRELRITLNSLKAVGKNINGNIDVLLDSGTTITYLQQ 227
Query: 197 EVYETIAAEFDRQV 210
+V + I F ++
Sbjct: 228 DVAQDIIDAFQAEL 241
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 170 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 229
+GS K TS I D+G++ +LP V A+ + +S GY + C
Sbjct: 203 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC----- 255
Query: 230 SQRLPKL 236
S LP
Sbjct: 256 SATLPSF 262
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 170 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 229
+GS K TS I D+G++ +LP V A+ + +S GY + C
Sbjct: 203 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC----- 255
Query: 230 SQRLPKL 236
S LP
Sbjct: 256 SATLPSF 262
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 170 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 229
+GS K TS I D+G++ +LP V A+ + +S GY + C
Sbjct: 202 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC----- 254
Query: 230 SQRLPKL 236
S LP
Sbjct: 255 SATLPSF 261
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 170 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSS 229
+GS K TS I D+G++ +LP V A+ + +S GY + C
Sbjct: 202 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC----- 254
Query: 230 SQRLPKL 236
S LP
Sbjct: 255 SATLPSF 261
>pdb|3EQA|A Chain A, Catalytic Domain Of Glucoamylase From Aspergillus Niger
Complexed With Tris And Glycerol
Length = 470
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 27 CDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNAL----KNSVQASVII 82
D G +P P DY+ T SGL+++ ++ L GD +L +N + A I+
Sbjct: 32 ADSGIVVASPSTDNP---DYFYTWTRDSGLVLKTLVDLFRNGDTSLLSTIENYISAQAIV 88
Query: 83 GCGMKQSGGYLDGVAPDGLIGLGLGE 108
G+ G L G GLGE
Sbjct: 89 Q-GISNPSGDLSS-------GAGLGE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,346,268
Number of Sequences: 62578
Number of extensions: 426928
Number of successful extensions: 1056
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 120
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)