Query 016605
Match_columns 386
No_of_seqs 284 out of 3082
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2900 Biotin synthase [Coenz 100.0 2.1E-62 4.4E-67 426.8 21.9 375 1-385 1-379 (380)
2 PLN02389 biotin synthase 100.0 6.5E-59 1.4E-63 448.5 37.7 337 49-385 43-379 (379)
3 COG0502 BioB Biotin synthase a 100.0 1.2E-55 2.6E-60 410.4 32.5 311 50-364 11-323 (335)
4 PRK15108 biotin synthase; Prov 100.0 1.8E-54 4E-59 415.2 36.9 319 49-369 3-321 (345)
5 PRK08444 hypothetical protein; 100.0 6.6E-51 1.4E-55 389.8 32.8 318 39-370 2-350 (353)
6 PRK06256 biotin synthase; Vali 100.0 6.2E-49 1.3E-53 378.6 37.1 322 36-366 6-330 (336)
7 TIGR03700 mena_SCO4494 putativ 100.0 1E-47 2.2E-52 370.8 31.2 317 40-369 1-350 (351)
8 PRK07360 FO synthase subunit 2 100.0 3.2E-47 7E-52 369.4 32.2 325 35-370 5-367 (371)
9 PRK05926 hypothetical protein; 100.0 5.8E-47 1.2E-51 364.8 33.4 319 35-366 13-368 (370)
10 TIGR03551 F420_cofH 7,8-dideme 100.0 1.9E-46 4.2E-51 361.2 31.8 307 53-368 1-343 (343)
11 TIGR03699 mena_SCO4550 menaqui 100.0 6E-46 1.3E-50 358.1 31.4 310 51-369 1-339 (340)
12 PRK08445 hypothetical protein; 100.0 7E-46 1.5E-50 355.9 31.6 310 51-370 2-345 (348)
13 PRK08508 biotin synthase; Prov 100.0 2.2E-45 4.7E-50 343.5 30.8 273 84-362 2-276 (279)
14 PRK05927 hypothetical protein; 100.0 2E-45 4.3E-50 352.0 29.0 313 49-370 3-346 (350)
15 PRK09234 fbiC FO synthase; Rev 100.0 8.5E-44 1.9E-48 371.7 33.5 327 37-378 474-837 (843)
16 PRK09240 thiH thiamine biosynt 100.0 6.8E-44 1.5E-48 345.9 30.1 315 38-365 24-364 (371)
17 TIGR00433 bioB biotin syntheta 100.0 1.2E-42 2.6E-47 329.5 35.3 294 61-358 1-296 (296)
18 PRK09234 fbiC FO synthase; Rev 100.0 5.8E-42 1.3E-46 357.9 35.1 328 33-369 10-376 (843)
19 TIGR02351 thiH thiazole biosyn 100.0 6.1E-42 1.3E-46 331.9 30.3 314 38-364 23-362 (366)
20 PRK07094 biotin synthase; Prov 100.0 2.5E-41 5.5E-46 324.1 34.1 274 53-335 1-280 (323)
21 COG1060 ThiH Thiamine biosynth 100.0 5.5E-41 1.2E-45 321.0 29.4 324 37-371 8-364 (370)
22 TIGR00423 radical SAM domain p 100.0 4.1E-40 8.8E-45 313.1 27.4 268 92-369 9-308 (309)
23 PRK09613 thiH thiamine biosynt 100.0 4.9E-39 1.1E-43 316.5 35.5 324 34-369 30-389 (469)
24 TIGR03550 F420_cofG 7,8-dideme 100.0 1.4E-39 3E-44 310.6 25.9 274 90-370 6-307 (322)
25 PRK06245 cofG FO synthase subu 100.0 1.2E-36 2.5E-41 293.1 28.0 280 82-370 4-311 (336)
26 PRK06267 hypothetical protein; 100.0 2.2E-35 4.7E-40 284.3 30.1 273 66-353 5-286 (350)
27 PRK05481 lipoyl synthase; Prov 99.9 7.7E-24 1.7E-28 198.6 25.2 232 54-299 20-260 (289)
28 PRK12928 lipoyl synthase; Prov 99.9 8.1E-24 1.8E-28 197.9 24.1 231 55-300 28-269 (290)
29 PRK08207 coproporphyrinogen II 99.9 4.1E-23 9E-28 206.2 28.2 268 20-303 100-393 (488)
30 PTZ00413 lipoate synthase; Pro 99.9 7.4E-23 1.6E-27 192.6 24.6 197 95-300 155-360 (398)
31 TIGR00510 lipA lipoate synthas 99.9 8.4E-23 1.8E-27 191.4 22.2 196 92-296 67-270 (302)
32 PRK05904 coproporphyrinogen II 99.9 4.6E-23 9.9E-28 198.9 20.6 245 91-340 10-274 (353)
33 PLN02428 lipoic acid synthase 99.9 2.2E-22 4.9E-27 190.6 24.2 201 91-300 105-312 (349)
34 PLN02951 Molybderin biosynthes 99.9 6.7E-22 1.5E-26 192.0 24.0 238 82-332 53-306 (373)
35 COG2896 MoaA Molybdenum cofact 99.9 5.4E-22 1.2E-26 184.7 22.2 238 82-332 6-257 (322)
36 TIGR00539 hemN_rel putative ox 99.9 1.5E-22 3.2E-27 196.7 18.6 255 96-357 7-286 (360)
37 PRK05799 coproporphyrinogen II 99.9 3.3E-22 7.1E-27 195.5 20.5 237 96-337 10-271 (374)
38 PRK13361 molybdenum cofactor b 99.9 9.4E-22 2E-26 188.8 22.1 237 82-332 9-261 (329)
39 PRK07379 coproporphyrinogen II 99.9 8.6E-22 1.9E-26 193.5 20.7 255 96-355 17-303 (400)
40 PRK08446 coproporphyrinogen II 99.9 6.2E-22 1.4E-26 191.4 18.3 235 96-338 7-263 (350)
41 PRK05660 HemN family oxidoredu 99.9 1.1E-21 2.5E-26 191.4 20.1 198 96-304 13-230 (378)
42 PRK06294 coproporphyrinogen II 99.9 5.9E-22 1.3E-26 192.8 17.8 253 91-354 10-290 (370)
43 TIGR01579 MiaB-like-C MiaB-lik 99.9 2.1E-21 4.5E-26 192.3 21.7 200 90-296 140-352 (414)
44 PRK08599 coproporphyrinogen II 99.9 3.6E-21 7.9E-26 188.3 22.5 250 96-355 8-288 (377)
45 PRK05628 coproporphyrinogen II 99.9 2.2E-21 4.7E-26 189.7 19.7 260 96-361 9-301 (375)
46 PRK08208 coproporphyrinogen II 99.9 2.7E-21 5.9E-26 191.8 20.3 237 96-336 46-307 (430)
47 PRK09057 coproporphyrinogen II 99.9 1.8E-21 4E-26 190.1 18.2 260 96-361 11-300 (380)
48 PRK14331 (dimethylallyl)adenos 99.9 6.8E-21 1.5E-25 189.5 22.0 195 89-290 147-353 (437)
49 PRK14340 (dimethylallyl)adenos 99.9 7.9E-21 1.7E-25 188.8 22.1 193 89-288 150-355 (445)
50 TIGR01125 MiaB-like tRNA modif 99.9 9.3E-21 2E-25 188.3 22.7 196 90-292 137-345 (430)
51 PRK14338 (dimethylallyl)adenos 99.9 1.6E-20 3.5E-25 187.5 23.5 188 89-283 156-355 (459)
52 PRK14327 (dimethylallyl)adenos 99.9 2E-20 4.4E-25 187.4 24.0 190 88-284 212-413 (509)
53 TIGR03471 HpnJ hopanoid biosyn 99.9 1.2E-20 2.6E-25 189.8 22.1 181 91-281 199-384 (472)
54 smart00729 Elp3 Elongator prot 99.9 9.2E-21 2E-25 169.7 19.0 186 91-284 4-201 (216)
55 PRK00164 moaA molybdenum cofac 99.9 1.5E-20 3.2E-25 181.0 21.2 238 82-332 12-265 (331)
56 TIGR00089 RNA modification enz 99.9 9.4E-21 2E-25 188.4 20.4 198 90-294 141-351 (429)
57 PRK09058 coproporphyrinogen II 99.9 1.5E-20 3.3E-25 187.3 20.6 255 91-354 65-352 (449)
58 PRK14326 (dimethylallyl)adenos 99.9 3.8E-20 8.2E-25 186.3 23.3 189 89-284 158-358 (502)
59 PRK06582 coproporphyrinogen II 99.9 1.3E-20 2.8E-25 184.2 19.3 233 96-335 18-280 (390)
60 TIGR01578 MiaB-like-B MiaB-lik 99.9 5.1E-20 1.1E-24 182.2 23.4 195 89-290 134-340 (420)
61 PRK14339 (dimethylallyl)adenos 99.9 3.9E-20 8.5E-25 182.8 22.5 198 89-293 128-341 (420)
62 PRK14325 (dimethylallyl)adenos 99.9 4E-20 8.6E-25 184.5 22.7 199 90-295 149-362 (444)
63 TIGR02666 moaA molybdenum cofa 99.9 5.5E-20 1.2E-24 177.2 22.5 239 82-332 5-264 (334)
64 PRK14334 (dimethylallyl)adenos 99.9 4.5E-20 9.7E-25 183.7 22.4 199 88-293 138-348 (440)
65 PRK14335 (dimethylallyl)adenos 99.9 6.7E-20 1.5E-24 182.9 23.5 198 90-294 154-370 (455)
66 PRK14332 (dimethylallyl)adenos 99.9 5.4E-20 1.2E-24 182.9 22.7 193 89-290 155-360 (449)
67 TIGR01574 miaB-methiolase tRNA 99.9 4.5E-20 9.7E-25 183.7 22.2 195 89-290 146-355 (438)
68 PRK14336 (dimethylallyl)adenos 99.9 5.6E-20 1.2E-24 181.6 22.6 195 89-290 125-333 (418)
69 PRK14329 (dimethylallyl)adenos 99.9 7.5E-20 1.6E-24 183.0 23.4 186 90-282 170-372 (467)
70 PRK14330 (dimethylallyl)adenos 99.9 5.8E-20 1.2E-24 182.8 22.2 186 90-282 142-339 (434)
71 TIGR00538 hemN oxygen-independ 99.9 8.6E-20 1.9E-24 182.6 23.5 201 96-303 56-276 (455)
72 TIGR01212 radical SAM protein, 99.9 1.1E-19 2.4E-24 172.0 23.0 218 77-304 9-253 (302)
73 COG1856 Uncharacterized homolo 99.9 8.9E-20 1.9E-24 157.5 20.1 231 92-332 14-249 (275)
74 TIGR02026 BchE magnesium-proto 99.9 3.9E-20 8.5E-25 186.8 21.1 178 92-281 197-384 (497)
75 PRK08898 coproporphyrinogen II 99.9 4.5E-20 9.8E-25 181.1 20.2 236 96-334 26-286 (394)
76 PRK14328 (dimethylallyl)adenos 99.9 7.2E-20 1.6E-24 182.2 21.9 196 90-292 149-357 (439)
77 PRK14862 rimO ribosomal protei 99.9 1.3E-19 2.7E-24 180.2 23.2 198 90-295 141-359 (440)
78 PRK13347 coproporphyrinogen II 99.8 1.9E-19 4.2E-24 179.8 24.0 206 90-304 53-278 (453)
79 TIGR02668 moaA_archaeal probab 99.8 1.5E-19 3.4E-24 171.7 21.9 237 82-332 5-253 (302)
80 PRK14337 (dimethylallyl)adenos 99.8 2.6E-19 5.6E-24 178.4 23.3 198 89-293 149-360 (446)
81 PRK09249 coproporphyrinogen II 99.8 3.5E-19 7.6E-24 178.0 23.6 201 96-303 56-276 (453)
82 PRK14333 (dimethylallyl)adenos 99.8 1.8E-19 3.8E-24 179.8 21.2 198 89-293 149-366 (448)
83 COG0621 MiaB 2-methylthioadeni 99.8 5.8E-19 1.3E-23 171.6 20.4 189 88-283 144-345 (437)
84 PRK05301 pyrroloquinoline quin 99.8 2.6E-18 5.6E-23 168.4 23.6 176 87-275 15-194 (378)
85 COG0635 HemN Coproporphyrinoge 99.8 1.5E-18 3.1E-23 170.5 20.5 233 96-336 41-307 (416)
86 TIGR01211 ELP3 histone acetylt 99.8 1.8E-17 3.9E-22 166.0 27.7 206 96-304 75-335 (522)
87 TIGR03470 HpnH hopanoid biosyn 99.8 7.3E-18 1.6E-22 160.8 23.6 218 65-297 4-224 (318)
88 PRK08629 coproporphyrinogen II 99.8 3.2E-18 7E-23 169.3 21.1 252 96-361 59-334 (433)
89 TIGR02109 PQQ_syn_pqqE coenzym 99.8 7.2E-18 1.6E-22 164.1 23.0 175 88-275 7-185 (358)
90 cd01335 Radical_SAM Radical SA 99.8 6.2E-18 1.3E-22 149.5 19.8 190 96-294 4-201 (204)
91 COG0320 LipA Lipoate synthase 99.8 9.3E-18 2E-22 149.7 18.3 196 96-300 77-278 (306)
92 TIGR02493 PFLA pyruvate format 99.8 1.6E-16 3.5E-21 145.5 21.8 193 96-299 22-233 (235)
93 PF04055 Radical_SAM: Radical 99.8 2.4E-17 5.3E-22 141.4 15.1 156 93-257 2-166 (166)
94 TIGR01290 nifB nitrogenase cof 99.8 2.2E-16 4.8E-21 156.3 23.7 205 92-304 28-261 (442)
95 TIGR01210 conserved hypothetic 99.8 2.4E-16 5.1E-21 149.8 22.8 206 81-299 8-243 (313)
96 PRK13762 tRNA-modifying enzyme 99.7 5.3E-16 1.2E-20 147.7 21.8 215 79-302 48-291 (322)
97 COG1242 Predicted Fe-S oxidore 99.7 1.3E-15 2.9E-20 136.4 22.5 225 75-310 13-266 (312)
98 PRK11145 pflA pyruvate formate 99.7 9.5E-16 2.1E-20 141.4 21.1 195 96-301 27-240 (246)
99 COG2100 Predicted Fe-S oxidore 99.7 4.3E-15 9.3E-20 135.4 20.4 199 96-299 114-325 (414)
100 COG1243 ELP3 Histone acetyltra 99.7 1.9E-14 4.2E-19 137.1 24.2 208 96-305 74-328 (515)
101 PRK00955 hypothetical protein; 99.7 1.2E-14 2.5E-19 147.0 21.7 228 44-280 250-524 (620)
102 PRK01254 hypothetical protein; 99.7 8.1E-15 1.7E-19 147.1 19.7 225 48-281 335-607 (707)
103 COG1032 Fe-S oxidoreductase [E 99.6 6.3E-15 1.4E-19 149.0 17.5 193 90-290 200-411 (490)
104 TIGR02495 NrdG2 anaerobic ribo 99.6 4.8E-14 1E-18 125.0 20.6 156 96-261 23-183 (191)
105 TIGR03822 AblA_like_2 lysine-2 99.6 3.6E-14 7.7E-19 135.5 20.3 192 90-304 90-296 (321)
106 COG1180 PflA Pyruvate-formate 99.6 1.1E-13 2.4E-18 127.9 21.9 193 96-301 42-240 (260)
107 PRK14456 ribosomal RNA large s 99.6 4.2E-13 9.1E-18 129.5 24.8 190 92-300 125-340 (368)
108 PRK13745 anaerobic sulfatase-m 99.6 1.2E-13 2.7E-18 136.6 20.7 182 88-274 13-205 (412)
109 PRK14460 ribosomal RNA large s 99.6 5.6E-13 1.2E-17 128.4 23.1 188 96-300 109-319 (354)
110 COG0535 Predicted Fe-S oxidore 99.6 4.5E-13 9.7E-18 129.5 22.4 176 87-276 18-199 (347)
111 PRK13758 anaerobic sulfatase-m 99.6 4.1E-13 8.9E-18 131.3 22.0 170 96-275 12-198 (370)
112 PRK14469 ribosomal RNA large s 99.6 1.1E-12 2.4E-17 126.5 23.8 187 96-301 108-313 (343)
113 PRK14459 ribosomal RNA large s 99.6 1.8E-12 3.9E-17 124.7 24.7 190 96-300 128-346 (373)
114 COG0731 Fe-S oxidoreductases [ 99.5 3.7E-13 8E-18 124.2 18.3 169 98-276 33-216 (296)
115 PRK14468 ribosomal RNA large s 99.5 1.8E-12 3.9E-17 124.5 23.7 187 96-300 100-308 (343)
116 smart00876 BATS Biotin and Thi 99.5 2.4E-14 5.1E-19 111.6 8.5 93 268-360 1-94 (94)
117 PF06968 BATS: Biotin and Thia 99.5 1.7E-14 3.7E-19 112.1 7.3 91 269-360 2-93 (93)
118 PRK14455 ribosomal RNA large s 99.5 3.9E-12 8.5E-17 122.7 24.0 187 96-300 116-324 (356)
119 TIGR00048 radical SAM enzyme, 99.5 5.8E-12 1.3E-16 121.5 24.3 187 96-300 112-320 (355)
120 PRK14463 ribosomal RNA large s 99.5 5E-12 1.1E-16 121.6 22.6 199 92-308 107-320 (349)
121 PRK14470 ribosomal RNA large s 99.5 7.2E-12 1.6E-16 119.7 22.6 184 96-298 104-305 (336)
122 TIGR03278 methan_mark_10 putat 99.5 4.9E-12 1.1E-16 123.4 21.5 168 120-295 52-236 (404)
123 COG0641 AslB Arylsulfatase reg 99.5 5.4E-12 1.2E-16 122.2 20.8 189 96-295 14-216 (378)
124 COG2516 Biotin synthase-relate 99.5 1.8E-12 3.9E-17 118.7 16.4 205 96-310 38-260 (339)
125 PRK14466 ribosomal RNA large s 99.5 2.1E-11 4.6E-16 116.0 23.9 195 96-308 110-320 (345)
126 KOG2672 Lipoate synthase [Coen 99.5 1.7E-12 3.6E-17 116.0 15.0 195 92-294 114-315 (360)
127 PRK14467 ribosomal RNA large s 99.5 2.1E-11 4.6E-16 116.9 23.6 189 96-301 106-317 (348)
128 PRK14462 ribosomal RNA large s 99.5 2.3E-11 5E-16 116.6 23.1 187 96-300 117-325 (356)
129 PRK14457 ribosomal RNA large s 99.4 4.6E-11 9.9E-16 114.6 24.1 187 96-300 108-317 (345)
130 TIGR02494 PFLE_PFLC glycyl-rad 99.4 2E-11 4.4E-16 115.6 21.1 169 122-298 106-291 (295)
131 TIGR03821 AblA_like_1 lysine-2 99.4 1.1E-11 2.3E-16 118.3 18.8 193 92-304 100-302 (321)
132 TIGR00238 KamA family protein. 99.4 1.2E-11 2.6E-16 118.5 19.1 189 91-304 116-319 (331)
133 PRK14454 ribosomal RNA large s 99.4 8.9E-11 1.9E-15 112.6 23.3 187 96-300 108-313 (342)
134 TIGR03820 lys_2_3_AblA lysine- 99.4 8.5E-11 1.8E-15 114.4 21.9 192 91-304 111-314 (417)
135 KOG2876 Molybdenum cofactor bi 99.4 8.3E-13 1.8E-17 117.3 6.6 194 92-296 15-213 (323)
136 PRK11194 ribosomal RNA large s 99.4 2.6E-10 5.5E-15 110.2 23.8 187 96-300 110-324 (372)
137 PRK14465 ribosomal RNA large s 99.4 2.7E-10 5.8E-15 108.8 23.6 186 96-300 112-316 (342)
138 PRK10076 pyruvate formate lyas 99.3 1.2E-10 2.7E-15 104.3 19.3 170 121-300 18-204 (213)
139 PRK14453 chloramphenicol/florf 99.3 3.8E-10 8.3E-15 108.3 22.9 193 96-301 107-318 (347)
140 COG1031 Uncharacterized Fe-S o 99.3 4.3E-10 9.4E-15 107.4 19.0 203 74-283 170-414 (560)
141 PRK14461 ribosomal RNA large s 99.3 2.2E-09 4.8E-14 102.5 23.1 190 96-300 114-339 (371)
142 PRK14464 ribosomal RNA large s 99.2 9.5E-10 2.1E-14 104.9 20.4 188 96-300 103-304 (344)
143 COG4277 Predicted DNA-binding 99.2 1.8E-10 3.9E-15 104.3 13.7 193 96-296 61-279 (404)
144 TIGR03365 Bsubt_queE 7-cyano-7 99.2 3.2E-09 6.9E-14 97.2 21.7 130 96-242 29-160 (238)
145 COG2108 Uncharacterized conser 99.2 4.4E-10 9.5E-15 103.3 15.0 163 92-276 32-205 (353)
146 KOG4355 Predicted Fe-S oxidore 99.2 4.2E-10 9.1E-15 105.0 14.3 198 90-294 189-399 (547)
147 COG5014 Predicted Fe-S oxidore 99.1 2.9E-09 6.4E-14 89.1 13.2 171 90-268 42-220 (228)
148 COG0820 Predicted Fe-S-cluster 99.0 8.6E-08 1.9E-12 90.5 19.2 182 96-295 108-312 (349)
149 cd03174 DRE_TIM_metallolyase D 98.9 4.8E-07 1E-11 84.3 23.4 221 120-359 14-248 (265)
150 PF13353 Fer4_12: 4Fe-4S singl 98.9 6.1E-09 1.3E-13 87.2 7.8 102 96-205 12-118 (139)
151 COG1533 SplB DNA repair photol 98.8 5.3E-07 1.2E-11 84.8 18.5 174 92-269 33-218 (297)
152 KOG2492 CDK5 activator-binding 98.8 1.8E-07 3.9E-12 88.3 14.6 183 91-280 223-440 (552)
153 COG1244 Predicted Fe-S oxidore 98.7 5.5E-06 1.2E-10 76.7 20.1 200 96-304 54-283 (358)
154 COG1625 Fe-S oxidoreductase, r 98.6 9E-07 2E-11 84.7 14.3 202 96-310 34-254 (414)
155 COG1313 PflX Uncharacterized F 98.6 3.3E-06 7.1E-11 76.9 16.6 195 91-301 122-327 (335)
156 TIGR02826 RNR_activ_nrdG3 anae 98.4 3.9E-06 8.5E-11 70.8 11.9 95 96-201 22-116 (147)
157 COG1509 KamA Lysine 2,3-aminom 98.4 1.9E-05 4.1E-10 74.5 16.5 195 91-304 114-318 (369)
158 PF13394 Fer4_14: 4Fe-4S singl 98.4 8.6E-07 1.9E-11 72.1 6.9 80 96-183 5-92 (119)
159 COG1964 Predicted Fe-S oxidore 98.4 8.4E-06 1.8E-10 78.6 13.8 144 121-276 90-241 (475)
160 TIGR03217 4OH_2_O_val_ald 4-hy 98.3 0.00028 6E-09 67.8 24.0 215 121-360 20-247 (333)
161 KOG2535 RNA polymerase II elon 98.3 4.4E-05 9.6E-10 71.1 16.6 183 122-304 150-365 (554)
162 PF00682 HMGL-like: HMGL-like 98.3 8.6E-05 1.9E-09 68.0 18.4 219 122-357 11-237 (237)
163 PRK08195 4-hyroxy-2-oxovalerat 98.2 0.0011 2.4E-08 63.8 25.3 214 121-359 21-247 (337)
164 cd07939 DRE_TIM_NifV Streptomy 98.2 0.00068 1.5E-08 63.0 23.1 217 121-360 16-242 (259)
165 PRK11858 aksA trans-homoaconit 98.2 0.0006 1.3E-08 66.9 23.3 218 121-360 22-248 (378)
166 TIGR02090 LEU1_arch isopropylm 98.2 0.0008 1.7E-08 65.6 23.4 217 121-360 18-244 (363)
167 TIGR03279 cyano_FeS_chp putati 98.1 3.3E-05 7.1E-10 75.5 12.7 121 178-298 122-249 (433)
168 cd07948 DRE_TIM_HCS Saccharomy 98.1 0.0016 3.6E-08 60.4 23.0 215 120-357 17-240 (262)
169 PRK05692 hydroxymethylglutaryl 98.1 0.0021 4.5E-08 60.5 23.8 224 121-360 22-264 (287)
170 cd07943 DRE_TIM_HOA 4-hydroxy- 98.1 0.002 4.4E-08 59.9 23.6 214 121-360 18-244 (263)
171 TIGR02491 NrdG anaerobic ribon 98.1 4.4E-05 9.6E-10 65.1 10.8 85 96-188 22-112 (154)
172 TIGR02660 nifV_homocitr homoci 98.1 0.0014 3.1E-08 64.0 22.7 217 121-360 19-245 (365)
173 cd07938 DRE_TIM_HMGL 3-hydroxy 98.0 0.0021 4.5E-08 60.2 22.1 224 121-360 16-258 (274)
174 PRK11121 nrdG anaerobic ribonu 98.0 5E-05 1.1E-09 64.7 10.3 100 96-204 23-129 (154)
175 PLN02746 hydroxymethylglutaryl 98.0 0.003 6.4E-08 60.8 23.4 224 121-360 64-306 (347)
176 cd07944 DRE_TIM_HOA_like 4-hyd 98.0 0.0032 6.9E-08 58.7 22.7 209 121-356 16-238 (266)
177 cd07940 DRE_TIM_IPMS 2-isoprop 97.9 0.0037 7.9E-08 58.4 22.3 215 121-357 16-245 (268)
178 COG0602 NrdG Organic radical a 97.8 6E-05 1.3E-09 67.7 7.9 83 96-185 29-113 (212)
179 PRK09389 (R)-citramalate synth 97.7 0.01 2.2E-07 60.2 22.9 217 121-360 20-246 (488)
180 cd07941 DRE_TIM_LeuA3 Desulfob 97.7 0.028 6.2E-07 52.6 24.5 218 121-359 16-254 (273)
181 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.7 0.015 3.2E-07 54.5 22.0 213 121-359 17-250 (275)
182 cd07945 DRE_TIM_CMS Leptospira 97.7 0.034 7.4E-07 52.2 23.7 221 121-360 15-251 (280)
183 PRK12330 oxaloacetate decarbox 97.7 0.014 3.1E-07 58.7 22.2 214 122-360 24-259 (499)
184 PRK00915 2-isopropylmalate syn 97.6 0.012 2.5E-07 60.1 20.6 217 121-356 22-251 (513)
185 PRK08091 ribulose-phosphate 3- 97.5 0.013 2.9E-07 52.9 18.3 198 122-354 22-224 (228)
186 PRK14041 oxaloacetate decarbox 97.5 0.027 5.9E-07 56.5 21.7 215 121-360 21-255 (467)
187 PRK12331 oxaloacetate decarbox 97.5 0.042 9.1E-07 54.9 22.9 215 121-360 22-256 (448)
188 PRK12581 oxaloacetate decarbox 97.4 0.067 1.5E-06 53.5 22.6 213 122-360 32-265 (468)
189 PRK14040 oxaloacetate decarbox 97.3 0.089 1.9E-06 54.5 23.3 213 121-359 23-256 (593)
190 TIGR01108 oadA oxaloacetate de 97.2 0.089 1.9E-06 54.4 22.6 215 121-360 17-251 (582)
191 PRK14057 epimerase; Provisiona 97.2 0.044 9.6E-07 50.3 18.2 205 122-363 29-251 (254)
192 PRK09282 pyruvate carboxylase 97.2 0.1 2.2E-06 54.2 22.4 214 121-359 22-255 (592)
193 PRK08745 ribulose-phosphate 3- 97.2 0.12 2.6E-06 46.7 20.3 199 122-356 13-218 (223)
194 PRK09722 allulose-6-phosphate 97.1 0.13 2.7E-06 46.7 19.7 197 123-355 13-217 (229)
195 PRK12344 putative alpha-isopro 97.1 0.17 3.6E-06 51.9 22.6 216 121-358 23-259 (524)
196 PRK14042 pyruvate carboxylase 97.1 0.17 3.6E-06 52.4 22.6 213 122-360 23-256 (596)
197 TIGR00977 LeuA_rel 2-isopropyl 97.1 0.23 4.9E-06 50.9 23.1 220 121-358 19-256 (526)
198 PLN03228 methylthioalkylmalate 97.0 0.23 4.9E-06 50.4 22.6 220 121-357 102-342 (503)
199 TIGR00973 leuA_bact 2-isopropy 97.0 0.12 2.7E-06 52.4 20.3 215 121-355 19-247 (494)
200 PRK08005 epimerase; Validated 96.9 0.28 6E-06 44.0 20.1 182 122-337 10-193 (210)
201 KOG3111 D-ribulose-5-phosphate 96.8 0.16 3.5E-06 44.1 16.5 194 123-355 15-215 (224)
202 COG0119 LeuA Isopropylmalate/h 96.6 0.42 9.1E-06 47.3 20.5 191 121-332 20-220 (409)
203 TIGR03128 RuMP_HxlA 3-hexulose 96.6 0.45 9.8E-06 42.3 19.3 191 122-354 9-203 (206)
204 COG5016 Pyruvate/oxaloacetate 96.6 0.13 2.9E-06 49.6 15.8 214 122-359 25-257 (472)
205 PRK08883 ribulose-phosphate 3- 96.6 0.56 1.2E-05 42.4 19.6 199 122-355 9-213 (220)
206 PLN02321 2-isopropylmalate syn 96.2 1.7 3.6E-05 45.5 22.6 220 121-357 104-343 (632)
207 PRK14847 hypothetical protein; 96.2 1.3 2.8E-05 42.5 21.9 221 121-360 50-299 (333)
208 PTZ00170 D-ribulose-5-phosphat 96.1 0.85 1.9E-05 41.4 18.2 199 122-355 16-219 (228)
209 COG0036 Rpe Pentose-5-phosphat 96.0 1.1 2.5E-05 40.0 19.1 182 122-336 13-198 (220)
210 TIGR00970 leuA_yeast 2-isoprop 95.8 2 4.3E-05 44.5 21.3 228 120-359 43-295 (564)
211 cd07947 DRE_TIM_Re_CS Clostrid 95.8 1.7 3.7E-05 40.7 23.6 223 122-359 18-262 (279)
212 PRK12999 pyruvate carboxylase; 95.7 2.2 4.8E-05 47.9 22.5 213 121-359 551-792 (1146)
213 PF00834 Ribul_P_3_epim: Ribul 95.7 0.056 1.2E-06 48.1 8.1 180 124-336 11-195 (201)
214 PRK14024 phosphoribosyl isomer 95.3 1.7 3.6E-05 39.9 17.0 197 126-352 33-238 (241)
215 cd07942 DRE_TIM_LeuA Mycobacte 95.2 2.8 6E-05 39.4 23.8 223 120-359 18-267 (284)
216 TIGR00735 hisF imidazoleglycer 95.2 2.5 5.5E-05 39.0 17.9 202 127-360 32-253 (254)
217 cd04731 HisF The cyclase subun 95.2 1.3 2.7E-05 40.6 15.8 201 126-355 28-242 (243)
218 COG3589 Uncharacterized conser 95.2 1.9 4E-05 41.0 16.6 79 123-202 14-99 (360)
219 KOG1160 Fe-S oxidoreductase [E 94.7 0.58 1.3E-05 45.8 12.2 139 153-296 363-509 (601)
220 PRK11613 folP dihydropteroate 94.6 2.2 4.7E-05 40.0 15.7 76 122-199 35-115 (282)
221 PRK13307 bifunctional formalde 94.6 3.6 7.8E-05 40.5 17.7 189 122-354 182-375 (391)
222 cd00331 IGPS Indole-3-glycerol 94.5 3.5 7.6E-05 36.9 17.6 177 122-339 28-205 (217)
223 PRK03739 2-isopropylmalate syn 93.9 9.2 0.0002 39.6 21.5 223 120-359 47-296 (552)
224 TIGR01235 pyruv_carbox pyruvat 93.8 10 0.00022 42.7 21.2 214 122-359 550-790 (1143)
225 PRK15452 putative protease; Pr 93.7 2.3 4.9E-05 42.7 14.7 89 174-269 5-95 (443)
226 cd00003 PNPsynthase Pyridoxine 93.6 0.77 1.7E-05 41.4 10.1 120 124-255 72-201 (234)
227 cd00739 DHPS DHPS subgroup of 93.4 2.9 6.3E-05 38.7 14.1 76 122-199 21-101 (257)
228 TIGR00559 pdxJ pyridoxine 5'-p 93.3 1 2.2E-05 40.7 10.4 119 124-254 72-200 (237)
229 COG2875 CobM Precorrin-4 methy 93.1 2.5 5.4E-05 38.1 12.3 50 121-176 58-107 (254)
230 COG0800 Eda 2-keto-3-deoxy-6-p 93.1 1.7 3.7E-05 38.7 11.2 102 122-255 22-124 (211)
231 PRK02083 imidazole glycerol ph 93.1 7.1 0.00015 35.9 18.6 204 128-360 33-251 (253)
232 TIGR01496 DHPS dihydropteroate 92.8 5.3 0.00011 37.0 14.9 77 121-199 19-100 (257)
233 TIGR00262 trpA tryptophan synt 92.6 8.4 0.00018 35.6 20.2 186 123-338 22-230 (256)
234 TIGR01769 GGGP geranylgeranylg 92.5 4.2 9.1E-05 36.3 13.1 75 121-201 130-205 (205)
235 PF03740 PdxJ: Pyridoxal phosp 92.3 1.1 2.4E-05 40.6 9.2 118 124-253 73-202 (239)
236 COG0106 HisA Phosphoribosylfor 92.3 1.5 3.2E-05 39.8 10.0 197 128-354 34-239 (241)
237 PF05853 DUF849: Prokaryotic p 92.2 9.9 0.00021 35.5 17.7 223 122-363 23-263 (272)
238 PRK05265 pyridoxine 5'-phospha 92.2 2 4.2E-05 39.0 10.5 116 124-252 75-200 (239)
239 PRK13585 1-(5-phosphoribosyl)- 92.1 7.5 0.00016 35.4 14.9 75 127-205 34-109 (241)
240 PRK00278 trpC indole-3-glycero 91.9 10 0.00023 35.1 15.8 173 126-339 71-244 (260)
241 cd04732 HisA HisA. Phosphorib 91.7 9.8 0.00021 34.3 16.5 185 126-338 30-222 (234)
242 PF03102 NeuB: NeuB family; I 91.7 11 0.00023 34.6 15.1 165 158-355 55-228 (241)
243 COG2876 AroA 3-deoxy-D-arabino 91.6 10 0.00022 34.9 14.5 203 123-355 57-276 (286)
244 PRK07535 methyltetrahydrofolat 91.5 12 0.00025 34.8 16.7 187 122-333 22-226 (261)
245 cd00423 Pterin_binding Pterin 91.2 8.5 0.00018 35.6 14.3 76 122-199 21-101 (258)
246 PF05913 DUF871: Bacterial pro 91.2 1.2 2.7E-05 43.2 8.9 77 123-201 12-96 (357)
247 TIGR03572 WbuZ glycosyl amidat 91.1 11 0.00025 33.9 15.5 132 126-273 31-176 (232)
248 TIGR00736 nifR3_rel_arch TIM-b 91.0 12 0.00026 34.0 17.9 184 127-336 31-221 (231)
249 PF04481 DUF561: Protein of un 90.9 11 0.00025 33.6 16.8 184 122-335 24-214 (242)
250 TIGR01163 rpe ribulose-phospha 90.8 11 0.00024 33.3 17.7 184 122-339 8-197 (210)
251 PF00218 IGPS: Indole-3-glycer 90.6 5.2 0.00011 36.9 12.0 174 126-341 69-244 (254)
252 COG2185 Sbm Methylmalonyl-CoA 90.6 5.9 0.00013 33.1 11.0 70 122-200 50-121 (143)
253 cd04724 Tryptophan_synthase_al 90.5 14 0.0003 33.9 19.0 184 123-337 12-217 (242)
254 COG0134 TrpC Indole-3-glycerol 90.5 9.8 0.00021 35.0 13.5 177 122-342 66-243 (254)
255 TIGR03849 arch_ComA phosphosul 90.5 10 0.00022 34.5 13.5 131 122-271 9-155 (237)
256 PRK13125 trpA tryptophan synth 90.3 14 0.00031 33.7 21.4 201 123-356 16-236 (244)
257 cd01299 Met_dep_hydrolase_A Me 90.2 7.5 0.00016 37.2 13.6 78 122-201 117-200 (342)
258 PRK06015 keto-hydroxyglutarate 90.0 3.9 8.4E-05 36.3 10.3 161 121-336 12-173 (201)
259 PF00290 Trp_syntA: Tryptophan 90.0 16 0.00034 33.9 15.3 186 123-338 22-229 (259)
260 PF10113 Fibrillarin_2: Fibril 89.9 2.3 4.9E-05 41.5 9.2 105 216-335 203-307 (505)
261 TIGR01182 eda Entner-Doudoroff 89.9 5 0.00011 35.8 10.9 160 122-336 17-177 (204)
262 PRK13753 dihydropteroate synth 89.7 6.1 0.00013 37.0 11.8 76 122-199 22-101 (279)
263 PF07745 Glyco_hydro_53: Glyco 89.6 20 0.00044 34.5 17.3 170 133-313 32-239 (332)
264 TIGR00007 phosphoribosylformim 89.2 16 0.00035 32.8 17.8 183 126-339 29-222 (230)
265 PRK13957 indole-3-glycerol-pho 88.9 19 0.0004 33.1 15.0 172 128-341 64-236 (247)
266 COG0826 Collagenase and relate 88.9 2.2 4.8E-05 41.3 8.6 81 183-269 15-98 (347)
267 COG1242 Predicted Fe-S oxidore 88.7 21 0.00045 33.3 17.9 135 122-274 97-267 (312)
268 TIGR02146 LysS_fung_arch homoc 88.5 24 0.00052 33.9 17.4 191 121-332 16-212 (344)
269 PRK00748 1-(5-phosphoribosyl)- 88.2 11 0.00024 34.0 12.4 76 126-205 31-107 (233)
270 PRK00507 deoxyribose-phosphate 88.2 19 0.00042 32.4 15.4 177 122-332 19-205 (221)
271 PLN02591 tryptophan synthase 88.1 14 0.0003 34.1 12.9 80 122-201 115-218 (250)
272 COG5016 Pyruvate/oxaloacetate 88.1 9.6 0.00021 37.3 12.0 75 119-200 92-175 (472)
273 TIGR00640 acid_CoA_mut_C methy 88.1 10 0.00022 31.2 10.9 70 122-200 40-111 (132)
274 TIGR01303 IMP_DH_rel_1 IMP deh 87.6 5.2 0.00011 40.5 10.6 131 125-272 224-359 (475)
275 cd04726 KGPDC_HPS 3-Keto-L-gul 87.5 19 0.00041 31.6 16.5 176 122-338 10-189 (202)
276 PRK05718 keto-hydroxyglutarate 87.1 22 0.00048 31.9 15.6 110 122-269 24-134 (212)
277 COG0159 TrpA Tryptophan syntha 87.0 15 0.00032 34.0 12.3 16 122-137 76-91 (265)
278 cd02810 DHOD_DHPD_FMN Dihydroo 86.7 28 0.0006 32.6 15.9 173 158-337 82-274 (289)
279 PRK11572 copper homeostasis pr 86.7 16 0.00034 33.6 12.1 112 123-253 71-187 (248)
280 TIGR01304 IMP_DH_rel_2 IMP deh 86.6 27 0.00058 34.2 14.5 161 158-338 118-287 (369)
281 PLN02617 imidazole glycerol ph 86.6 42 0.00091 34.6 18.1 223 122-360 264-536 (538)
282 cd00958 DhnA Class I fructose- 86.5 16 0.00034 33.1 12.4 127 123-271 74-215 (235)
283 PF01081 Aldolase: KDPG and KH 86.3 7.9 0.00017 34.2 9.9 160 122-336 17-177 (196)
284 COG0269 SgbH 3-hexulose-6-phos 86.3 24 0.00053 31.5 18.8 193 121-354 12-209 (217)
285 CHL00200 trpA tryptophan synth 86.3 28 0.00061 32.3 18.5 186 123-338 27-234 (263)
286 cd06543 GH18_PF-ChiA-like PF-C 86.2 25 0.00055 33.2 13.8 109 159-273 54-180 (294)
287 PRK13802 bifunctional indole-3 86.0 41 0.00089 35.8 16.5 187 128-357 73-260 (695)
288 PF00809 Pterin_bind: Pterin b 86.0 6.1 0.00013 35.3 9.2 76 122-199 16-97 (210)
289 COG2513 PrpB PEP phosphonomuta 85.9 29 0.00063 32.5 13.6 183 175-360 19-230 (289)
290 CHL00200 trpA tryptophan synth 85.8 8.1 0.00017 35.9 10.1 80 122-201 128-231 (263)
291 COG0269 SgbH 3-hexulose-6-phos 85.8 21 0.00046 31.9 12.1 104 131-253 73-181 (217)
292 PRK09490 metH B12-dependent me 85.4 66 0.0014 36.7 18.5 196 122-333 381-599 (1229)
293 PRK07565 dihydroorotate dehydr 85.2 30 0.00065 33.3 14.2 191 158-360 86-297 (334)
294 cd02911 arch_FMN Archeal FMN-b 85.1 30 0.00064 31.5 16.3 175 129-336 39-221 (233)
295 COG0107 HisF Imidazoleglycerol 84.9 7.1 0.00015 35.2 8.7 219 123-360 28-253 (256)
296 TIGR00284 dihydropteroate synt 84.4 17 0.00036 37.1 12.4 137 125-272 165-321 (499)
297 TIGR03586 PseI pseudaminic aci 84.2 41 0.00088 32.3 20.3 201 123-355 15-249 (327)
298 PF01208 URO-D: Uroporphyrinog 84.0 13 0.00029 35.6 11.3 71 129-201 186-263 (343)
299 PRK13587 1-(5-phosphoribosyl)- 83.8 10 0.00022 34.5 9.8 72 130-205 36-109 (234)
300 PRK14114 1-(5-phosphoribosyl)- 83.7 9.2 0.0002 35.0 9.4 76 126-205 31-106 (241)
301 PRK08649 inosine 5-monophospha 83.6 46 0.00099 32.6 14.6 166 157-341 116-291 (368)
302 PRK06806 fructose-bisphosphate 83.2 41 0.00088 31.6 18.8 189 122-333 26-228 (281)
303 PRK13397 3-deoxy-7-phosphohept 82.9 30 0.00064 31.9 12.2 205 123-356 27-247 (250)
304 COG1856 Uncharacterized homolo 82.8 31 0.00068 31.1 11.8 102 157-261 134-245 (275)
305 TIGR01463 mtaA_cmuA methyltran 82.8 46 0.001 31.9 15.5 73 127-200 182-261 (340)
306 PRK12330 oxaloacetate decarbox 82.2 14 0.00029 37.7 10.7 101 122-236 152-260 (499)
307 PRK07114 keto-hydroxyglutarate 82.1 24 0.00053 31.8 11.3 165 122-336 24-189 (222)
308 PRK06801 hypothetical protein; 81.7 47 0.001 31.3 17.5 190 122-332 26-230 (286)
309 cd07939 DRE_TIM_NifV Streptomy 81.3 25 0.00055 32.4 11.6 35 157-191 137-174 (259)
310 PRK10550 tRNA-dihydrouridine s 81.0 19 0.00041 34.3 10.8 99 124-226 147-254 (312)
311 cd00959 DeoC 2-deoxyribose-5-p 80.6 12 0.00026 33.2 8.8 74 123-200 129-202 (203)
312 PRK07807 inosine 5-monophospha 80.5 16 0.00034 37.2 10.5 119 125-255 226-350 (479)
313 cd03174 DRE_TIM_metallolyase D 80.5 34 0.00074 31.3 12.2 71 130-200 79-165 (265)
314 cd02801 DUS_like_FMN Dihydrour 80.4 42 0.00091 30.0 12.6 85 185-272 71-160 (231)
315 cd02071 MM_CoA_mut_B12_BD meth 80.3 29 0.00062 27.9 10.8 70 122-200 37-108 (122)
316 PF09370 TIM-br_sig_trns: TIM- 80.2 7.1 0.00015 36.0 7.2 97 157-258 135-238 (268)
317 TIGR00737 nifR3_yhdG putative 80.0 38 0.00081 32.3 12.6 140 185-337 79-224 (319)
318 PLN02446 (5-phosphoribosyl)-5- 79.9 6.2 0.00013 36.5 6.8 203 126-354 44-258 (262)
319 PF01207 Dus: Dihydrouridine s 79.7 6.6 0.00014 37.4 7.2 56 216-273 105-161 (309)
320 COG0685 MetF 5,10-methylenetet 79.4 32 0.0007 32.4 11.6 100 122-233 89-202 (291)
321 PF03932 CutC: CutC family; I 79.3 15 0.00033 32.6 8.9 114 123-256 70-190 (201)
322 PRK13523 NADPH dehydrogenase N 79.3 8.6 0.00019 37.1 7.9 80 122-201 224-305 (337)
323 COG3618 Predicted metal-depend 79.2 56 0.0012 30.5 17.2 203 122-356 37-256 (279)
324 PRK05096 guanosine 5'-monophos 79.1 35 0.00076 32.8 11.6 94 131-237 113-218 (346)
325 PF09370 TIM-br_sig_trns: TIM- 79.0 51 0.0011 30.5 12.3 165 159-337 66-248 (268)
326 PRK13111 trpA tryptophan synth 79.0 54 0.0012 30.3 19.6 186 123-338 24-231 (258)
327 PF02679 ComA: (2R)-phospho-3- 78.8 24 0.00053 32.3 10.2 129 122-269 22-166 (244)
328 PLN02460 indole-3-glycerol-pho 78.7 54 0.0012 31.6 12.9 178 128-341 142-323 (338)
329 PLN02540 methylenetetrahydrofo 78.6 52 0.0011 34.1 13.6 50 122-171 70-124 (565)
330 PRK13586 1-(5-phosphoribosyl)- 78.5 18 0.0004 32.9 9.4 75 126-205 31-106 (232)
331 cd02803 OYE_like_FMN_family Ol 78.3 13 0.00029 35.4 9.0 80 122-201 225-311 (327)
332 PRK06552 keto-hydroxyglutarate 78.3 51 0.0011 29.6 18.6 161 122-338 22-186 (213)
333 PRK13111 trpA tryptophan synth 78.0 52 0.0011 30.5 12.4 113 123-256 105-221 (258)
334 cd03465 URO-D_like The URO-D _ 77.7 65 0.0014 30.6 13.8 73 128-201 171-250 (330)
335 TIGR03217 4OH_2_O_val_ald 4-hy 77.7 20 0.00042 34.6 9.8 78 122-205 140-224 (333)
336 PF00977 His_biosynth: Histidi 77.7 6.7 0.00014 35.6 6.4 179 128-336 32-221 (229)
337 cd04740 DHOD_1B_like Dihydroor 77.7 62 0.0014 30.3 19.7 191 159-360 75-288 (296)
338 TIGR01037 pyrD_sub1_fam dihydr 77.7 63 0.0014 30.4 15.5 137 216-361 140-292 (300)
339 TIGR02129 hisA_euk phosphoribo 77.6 12 0.00026 34.4 7.9 65 128-202 41-105 (253)
340 TIGR03569 NeuB_NnaB N-acetylne 77.6 30 0.00066 33.2 11.0 200 123-355 14-250 (329)
341 PF00478 IMPDH: IMP dehydrogen 77.6 18 0.00039 35.1 9.4 115 128-254 110-230 (352)
342 PRK12581 oxaloacetate decarbox 77.2 39 0.00085 34.1 12.0 71 123-200 103-182 (468)
343 PF06180 CbiK: Cobalt chelatas 77.2 39 0.00084 31.4 11.2 124 123-257 120-257 (262)
344 COG0159 TrpA Tryptophan syntha 77.2 43 0.00093 31.1 11.4 23 212-234 72-94 (265)
345 PF04131 NanE: Putative N-acet 77.2 41 0.00089 29.5 10.6 111 122-254 52-163 (192)
346 PRK13396 3-deoxy-7-phosphohept 77.1 55 0.0012 31.8 12.6 185 123-335 113-306 (352)
347 COG0854 PdxJ Pyridoxal phospha 77.1 22 0.00048 31.8 9.0 91 158-253 110-203 (243)
348 PLN02746 hydroxymethylglutaryl 77.1 42 0.0009 32.6 11.8 113 122-245 155-279 (347)
349 PTZ00124 adenosine deaminase; 77.0 26 0.00056 34.2 10.5 87 159-261 206-301 (362)
350 cd00947 TBP_aldolase_IIB Tagat 76.8 66 0.0014 30.1 18.2 191 122-332 21-223 (276)
351 PRK11815 tRNA-dihydrouridine s 76.4 48 0.001 31.9 12.2 83 186-270 82-171 (333)
352 PRK14042 pyruvate carboxylase 76.3 55 0.0012 34.2 13.1 72 122-200 93-173 (596)
353 TIGR01464 hemE uroporphyrinoge 76.2 75 0.0016 30.5 15.0 71 129-201 184-261 (338)
354 PLN02591 tryptophan synthase 76.1 65 0.0014 29.7 13.1 111 123-254 94-208 (250)
355 COG1751 Uncharacterized conser 75.8 48 0.001 28.0 12.7 107 124-241 12-132 (186)
356 PF10566 Glyco_hydro_97: Glyco 75.6 35 0.00076 31.9 10.5 109 122-239 29-157 (273)
357 PRK06252 methylcobalamin:coenz 75.5 78 0.0017 30.3 14.6 71 128-200 183-259 (339)
358 cd07937 DRE_TIM_PC_TC_5S Pyruv 75.4 63 0.0014 30.1 12.4 78 122-205 146-228 (275)
359 COG3623 SgaU Putative L-xylulo 75.2 17 0.00037 32.9 7.8 94 176-273 13-119 (287)
360 cd07948 DRE_TIM_HCS Saccharomy 75.2 61 0.0013 30.0 12.1 108 122-245 105-222 (262)
361 TIGR00262 trpA tryptophan synt 75.1 44 0.00096 30.8 11.1 44 158-201 183-227 (256)
362 TIGR03572 WbuZ glycosyl amidat 75.0 16 0.00034 33.1 8.1 72 126-201 154-227 (232)
363 PRK15452 putative protease; Pr 74.9 66 0.0014 32.3 13.0 124 130-257 15-156 (443)
364 TIGR00126 deoC deoxyribose-pho 74.8 17 0.00037 32.6 8.0 75 122-200 129-203 (211)
365 PRK14041 oxaloacetate decarbox 74.7 57 0.0012 33.0 12.5 78 122-205 150-232 (467)
366 TIGR02320 PEP_mutase phosphoen 74.7 76 0.0017 29.8 17.6 202 138-358 38-263 (285)
367 PRK07998 gatY putative fructos 74.4 58 0.0013 30.6 11.7 76 123-205 86-177 (283)
368 PRK12737 gatY tagatose-bisphos 74.3 78 0.0017 29.8 17.5 188 122-332 26-229 (284)
369 COG3142 CutC Uncharacterized p 74.0 65 0.0014 29.2 11.2 118 124-257 72-192 (241)
370 PRK12331 oxaloacetate decarbox 74.0 59 0.0013 32.7 12.4 99 122-235 151-256 (448)
371 PRK12737 gatY tagatose-bisphos 73.9 80 0.0017 29.7 12.8 117 123-253 86-221 (284)
372 PRK04128 1-(5-phosphoribosyl)- 73.9 25 0.00054 31.9 9.0 75 123-205 31-106 (228)
373 cd02810 DHOD_DHPD_FMN Dihydroo 73.9 24 0.00053 32.9 9.3 80 122-201 173-272 (289)
374 PRK04326 methionine synthase; 73.7 69 0.0015 30.6 12.6 132 128-284 164-304 (330)
375 TIGR00126 deoC deoxyribose-pho 73.7 67 0.0015 28.7 18.4 176 122-332 15-201 (211)
376 PRK07709 fructose-bisphosphate 73.7 75 0.0016 29.9 12.3 118 128-255 90-224 (285)
377 PRK05286 dihydroorotate dehydr 73.6 20 0.00044 34.6 8.8 79 122-201 222-318 (344)
378 TIGR01037 pyrD_sub1_fam dihydr 73.6 25 0.00055 33.1 9.4 79 123-201 167-263 (300)
379 TIGR01305 GMP_reduct_1 guanosi 73.3 40 0.00087 32.4 10.3 100 130-236 111-216 (343)
380 PLN02433 uroporphyrinogen deca 73.2 92 0.002 30.0 15.5 68 131-201 185-260 (345)
381 PRK05848 nicotinate-nucleotide 73.1 21 0.00046 33.3 8.4 45 157-202 212-258 (273)
382 cd00381 IMPDH IMPDH: The catal 73.1 56 0.0012 31.3 11.6 126 127-269 95-225 (325)
383 PLN02334 ribulose-phosphate 3- 72.9 72 0.0016 28.7 18.4 184 123-337 18-204 (229)
384 TIGR00742 yjbN tRNA dihydrouri 72.8 80 0.0017 30.2 12.5 54 217-272 107-163 (318)
385 TIGR00676 fadh2 5,10-methylene 72.7 77 0.0017 29.5 12.2 108 122-243 70-192 (272)
386 cd00945 Aldolase_Class_I Class 72.5 62 0.0013 27.8 15.3 125 123-268 11-147 (201)
387 TIGR01235 pyruv_carbox pyruvat 72.5 61 0.0013 36.8 13.2 118 119-243 619-768 (1143)
388 cd04738 DHOD_2_like Dihydrooro 72.3 28 0.00061 33.4 9.4 79 122-201 213-309 (327)
389 TIGR00007 phosphoribosylformim 72.1 29 0.00064 31.1 9.1 69 129-201 149-218 (230)
390 PRK00115 hemE uroporphyrinogen 72.0 97 0.0021 29.9 15.3 72 128-201 189-267 (346)
391 PRK07028 bifunctional hexulose 72.0 1.1E+02 0.0024 30.5 18.0 191 121-354 12-207 (430)
392 cd00740 MeTr MeTr subgroup of 71.9 83 0.0018 29.0 15.0 115 122-255 23-144 (252)
393 PRK13398 3-deoxy-7-phosphohept 71.9 86 0.0019 29.2 12.8 205 123-355 39-258 (266)
394 KOG2367 Alpha-isopropylmalate 71.8 1.2E+02 0.0025 30.7 18.6 193 120-332 74-280 (560)
395 PRK02261 methylaspartate mutas 71.8 56 0.0012 27.0 11.0 69 122-200 41-118 (137)
396 TIGR00735 hisF imidazoleglycer 71.7 37 0.00081 31.2 9.8 98 124-235 154-253 (254)
397 TIGR00677 fadh2_euk methylenet 71.6 82 0.0018 29.5 12.1 107 123-243 72-196 (281)
398 PLN02321 2-isopropylmalate syn 71.6 63 0.0014 34.1 12.3 110 122-245 203-325 (632)
399 PF01729 QRPTase_C: Quinolinat 71.5 22 0.00048 30.6 7.6 65 123-201 89-155 (169)
400 cd00537 MTHFR Methylenetetrahy 71.5 45 0.00098 30.9 10.4 118 122-253 70-207 (274)
401 TIGR02090 LEU1_arch isopropylm 71.3 97 0.0021 30.2 13.0 106 125-245 112-222 (363)
402 cd02911 arch_FMN Archeal FMN-b 71.3 24 0.00052 32.1 8.2 69 125-201 152-220 (233)
403 COG2089 SpsE Sialic acid synth 71.3 98 0.0021 29.6 19.4 126 123-270 28-181 (347)
404 cd04735 OYE_like_4_FMN Old yel 71.2 23 0.0005 34.4 8.7 92 122-213 232-327 (353)
405 TIGR00620 sporelyase spore pho 70.8 45 0.00098 29.5 9.5 100 161-261 12-116 (199)
406 PRK11858 aksA trans-homoaconit 70.8 84 0.0018 30.8 12.5 109 122-245 109-226 (378)
407 PTZ00314 inosine-5'-monophosph 70.8 62 0.0013 33.1 11.9 121 123-255 239-364 (495)
408 PRK07998 gatY putative fructos 70.6 95 0.0021 29.2 15.9 188 122-332 26-226 (283)
409 PF01136 Peptidase_U32: Peptid 70.6 30 0.00066 31.1 8.9 66 125-205 2-71 (233)
410 PF00290 Trp_syntA: Tryptophan 70.5 34 0.00074 31.7 9.1 46 156-202 181-227 (259)
411 PRK05286 dihydroorotate dehydr 70.5 1.1E+02 0.0023 29.7 14.1 171 158-336 124-319 (344)
412 PRK13585 1-(5-phosphoribosyl)- 70.4 26 0.00055 31.8 8.4 70 128-201 152-222 (241)
413 cd00947 TBP_aldolase_IIB Tagat 70.3 95 0.0021 29.0 12.1 117 123-253 81-215 (276)
414 PF06180 CbiK: Cobalt chelatas 70.3 21 0.00046 33.1 7.7 145 122-278 58-211 (262)
415 cd04738 DHOD_2_like Dihydrooro 70.2 1E+02 0.0023 29.5 14.8 173 158-337 114-311 (327)
416 COG4018 Uncharacterized protei 70.2 31 0.00068 32.8 8.7 104 217-335 204-307 (505)
417 PRK10415 tRNA-dihydrouridine s 70.2 37 0.0008 32.5 9.7 73 125-202 149-225 (321)
418 PRK12738 kbaY tagatose-bisphos 70.0 99 0.0021 29.1 18.5 188 122-332 26-229 (286)
419 cd07944 DRE_TIM_HOA_like 4-hyd 69.9 53 0.0011 30.5 10.4 65 123-192 107-174 (266)
420 TIGR02320 PEP_mutase phosphoen 69.9 29 0.00063 32.6 8.7 85 100-192 117-203 (285)
421 KOG0564 5,10-methylenetetrahyd 69.8 36 0.00077 34.3 9.3 121 122-257 89-232 (590)
422 PF02219 MTHFR: Methylenetetra 69.8 54 0.0012 30.7 10.6 108 122-241 82-209 (287)
423 PRK14040 oxaloacetate decarbox 69.7 96 0.0021 32.5 13.1 99 123-235 153-257 (593)
424 cd00959 DeoC 2-deoxyribose-5-p 69.6 80 0.0017 27.9 18.1 176 121-332 13-200 (203)
425 TIGR01768 GGGP-family geranylg 69.6 44 0.00095 30.2 9.4 76 122-201 132-208 (223)
426 cd02812 PcrB_like PcrB_like pr 69.2 43 0.00094 30.2 9.2 72 121-201 131-204 (219)
427 cd06557 KPHMT-like Ketopantoat 69.2 77 0.0017 29.3 11.1 112 133-260 27-167 (254)
428 PLN03228 methylthioalkylmalate 69.0 97 0.0021 31.7 12.7 124 122-259 202-340 (503)
429 PRK09195 gatY tagatose-bisphos 69.0 1E+02 0.0022 28.9 12.3 117 123-253 86-221 (284)
430 cd00377 ICL_PEPM Members of th 68.9 94 0.002 28.4 14.9 155 177-335 12-180 (243)
431 PRK00507 deoxyribose-phosphate 68.9 42 0.00091 30.3 9.2 75 122-200 133-207 (221)
432 cd04723 HisA_HisF Phosphoribos 68.7 34 0.00073 31.1 8.7 75 126-205 36-111 (233)
433 cd03315 MLE_like Muconate lact 68.5 55 0.0012 30.1 10.3 42 216-260 215-256 (265)
434 PF03786 UxuA: D-mannonate deh 68.3 22 0.00048 34.4 7.6 87 137-245 24-112 (351)
435 PF01116 F_bP_aldolase: Fructo 68.3 1.1E+02 0.0023 28.9 15.5 187 122-332 25-232 (287)
436 PRK00208 thiG thiazole synthas 68.2 95 0.0021 28.5 11.2 37 165-201 167-204 (250)
437 TIGR00736 nifR3_rel_arch TIM-b 68.2 38 0.00081 30.8 8.7 71 125-201 148-220 (231)
438 PLN03033 2-dehydro-3-deoxyphos 68.2 1.1E+02 0.0023 28.8 15.8 184 123-335 28-240 (290)
439 PRK05692 hydroxymethylglutaryl 68.1 62 0.0013 30.4 10.6 113 122-245 113-237 (287)
440 TIGR00737 nifR3_yhdG putative 68.0 72 0.0016 30.4 11.2 75 126-203 148-224 (319)
441 COG1902 NemA NADH:flavin oxido 67.8 35 0.00075 33.3 9.0 80 122-201 234-318 (363)
442 COG2513 PrpB PEP phosphonomuta 67.6 36 0.00078 31.9 8.5 25 121-145 129-154 (289)
443 TIGR00695 uxuA mannonate dehyd 67.6 37 0.00081 33.4 9.1 90 131-246 16-111 (394)
444 TIGR01334 modD putative molybd 67.6 31 0.00068 32.3 8.3 60 133-202 203-264 (277)
445 TIGR01919 hisA-trpF 1-(5-phosp 67.5 48 0.001 30.3 9.5 76 123-205 32-107 (243)
446 TIGR02660 nifV_homocitr homoci 67.3 1E+02 0.0023 30.0 12.4 109 122-245 106-223 (365)
447 cd04731 HisF The cyclase subun 67.3 31 0.00067 31.3 8.2 74 124-201 148-223 (243)
448 cd04728 ThiG Thiazole synthase 67.0 98 0.0021 28.4 11.0 53 172-232 175-227 (248)
449 PRK09432 metF 5,10-methylenete 66.8 88 0.0019 29.6 11.3 32 122-153 94-125 (296)
450 TIGR02082 metH 5-methyltetrahy 66.7 2.2E+02 0.0048 32.5 16.0 196 122-333 365-583 (1178)
451 cd02803 OYE_like_FMN_family Ol 66.6 1.2E+02 0.0026 28.8 13.1 85 186-272 146-250 (327)
452 COG0826 Collagenase and relate 66.6 34 0.00073 33.2 8.5 127 128-257 16-159 (347)
453 PRK15447 putative protease; Pr 66.2 34 0.00073 32.4 8.4 51 183-239 17-68 (301)
454 COG0042 tRNA-dihydrouridine sy 66.1 95 0.0021 29.8 11.5 109 216-336 118-229 (323)
455 COG4130 Predicted sugar epimer 66.1 88 0.0019 28.1 10.1 116 177-304 13-133 (272)
456 PRK09195 gatY tagatose-bisphos 66.0 1.2E+02 0.0026 28.5 17.5 187 122-332 26-229 (284)
457 COG0036 Rpe Pentose-5-phosphat 66.0 55 0.0012 29.5 9.1 78 125-213 71-158 (220)
458 PF01261 AP_endonuc_2: Xylose 66.0 31 0.00067 29.9 7.8 75 187-270 1-91 (213)
459 TIGR01768 GGGP-family geranylg 66.0 1E+02 0.0022 27.8 14.2 116 127-260 16-147 (223)
460 PRK09282 pyruvate carboxylase 66.0 1.2E+02 0.0026 31.8 13.0 78 122-205 151-233 (592)
461 cd07940 DRE_TIM_IPMS 2-isoprop 65.9 81 0.0018 29.2 10.9 106 125-245 114-227 (268)
462 TIGR02319 CPEP_Pphonmut carbox 65.6 51 0.0011 31.2 9.3 71 121-193 128-199 (294)
463 TIGR01303 IMP_DH_rel_1 IMP deh 65.4 1.3E+02 0.0029 30.5 12.9 129 181-335 224-357 (475)
464 cd02801 DUS_like_FMN Dihydrour 65.3 35 0.00075 30.5 8.1 74 125-202 138-214 (231)
465 cd01321 ADGF Adenosine deamina 65.2 58 0.0013 31.5 10.0 65 158-237 178-251 (345)
466 PF00977 His_biosynth: Histidi 65.0 62 0.0014 29.2 9.6 73 122-201 147-220 (229)
467 PRK07259 dihydroorotate dehydr 64.9 72 0.0016 30.0 10.5 78 123-200 102-188 (301)
468 cd02932 OYE_YqiM_FMN Old yello 64.9 34 0.00073 32.9 8.3 78 123-200 239-319 (336)
469 cd00429 RPE Ribulose-5-phospha 64.8 96 0.0021 27.1 19.0 182 122-339 9-198 (211)
470 TIGR03849 arch_ComA phosphosul 64.7 1.1E+02 0.0025 27.8 12.6 103 122-234 38-149 (237)
471 COG0407 HemE Uroporphyrinogen- 64.6 1.4E+02 0.0031 29.0 14.7 75 125-200 189-269 (352)
472 TIGR01858 tag_bisphos_ald clas 64.6 1.3E+02 0.0027 28.3 12.0 112 132-253 89-219 (282)
473 PRK13587 1-(5-phosphoribosyl)- 64.5 43 0.00093 30.5 8.5 74 122-201 148-221 (234)
474 PRK09389 (R)-citramalate synth 64.4 1.2E+02 0.0026 30.9 12.5 109 122-245 107-224 (488)
475 PRK03906 mannonate dehydratase 64.3 15 0.00033 36.0 5.8 67 182-251 40-116 (385)
476 cd04739 DHOD_like Dihydroorota 64.3 1.4E+02 0.003 28.6 14.1 165 185-360 116-295 (325)
477 PRK07259 dihydroorotate dehydr 64.3 35 0.00075 32.2 8.2 78 123-201 167-263 (301)
478 cd07945 DRE_TIM_CMS Leptospira 64.3 1.3E+02 0.0027 28.2 13.1 110 122-245 108-229 (280)
479 cd04728 ThiG Thiazole synthase 64.1 93 0.002 28.5 10.3 122 122-271 73-205 (248)
480 cd02940 DHPD_FMN Dihydropyrimi 64.0 1.3E+02 0.0028 28.3 12.1 161 185-351 117-297 (299)
481 TIGR01859 fruc_bis_ald_ fructo 64.0 1.3E+02 0.0028 28.2 18.4 189 122-333 24-228 (282)
482 cd07941 DRE_TIM_LeuA3 Desulfob 63.9 53 0.0011 30.6 9.2 110 124-245 118-233 (273)
483 PRK12738 kbaY tagatose-bisphos 63.9 1.3E+02 0.0029 28.3 12.3 117 123-253 86-221 (286)
484 PHA02031 putative DnaG-like pr 63.5 31 0.00067 31.9 7.2 82 161-252 168-253 (266)
485 TIGR00973 leuA_bact 2-isopropy 63.5 90 0.002 31.9 11.4 32 158-189 145-179 (494)
486 PF01261 AP_endonuc_2: Xylose 63.3 58 0.0012 28.1 9.0 83 123-205 69-166 (213)
487 PRK08195 4-hyroxy-2-oxovalerat 63.3 53 0.0011 31.7 9.2 33 158-190 143-178 (337)
488 cd04734 OYE_like_3_FMN Old yel 63.2 52 0.0011 31.8 9.2 91 122-212 225-328 (343)
489 PRK08745 ribulose-phosphate 3- 62.9 1.2E+02 0.0026 27.4 11.5 73 122-201 121-199 (223)
490 cd03307 Mta_CmuA_like MtaA_Cmu 62.8 1.4E+02 0.0031 28.3 14.1 71 128-200 174-250 (326)
491 TIGR01858 tag_bisphos_ald clas 62.6 1.4E+02 0.003 28.1 18.1 188 122-332 24-227 (282)
492 PF00682 HMGL-like: HMGL-like 62.4 50 0.0011 29.7 8.6 34 157-190 135-171 (237)
493 PRK07896 nicotinate-nucleotide 62.4 46 0.001 31.3 8.4 45 157-202 229-275 (289)
494 cd04740 DHOD_1B_like Dihydroor 62.3 48 0.001 31.1 8.7 77 124-201 165-260 (296)
495 PRK08610 fructose-bisphosphate 62.3 1.4E+02 0.0031 28.1 12.5 118 128-255 90-224 (286)
496 cd02072 Glm_B12_BD B12 binding 62.2 87 0.0019 25.6 10.6 82 123-226 38-127 (128)
497 PRK00208 thiG thiazole synthas 62.1 1.1E+02 0.0023 28.2 10.3 122 122-271 73-205 (250)
498 KOG2550 IMP dehydrogenase/GMP 62.0 38 0.00082 33.3 7.7 102 130-238 255-360 (503)
499 PRK09427 bifunctional indole-3 61.9 1.8E+02 0.004 29.3 15.5 172 122-339 70-242 (454)
500 PRK08385 nicotinate-nucleotide 61.9 54 0.0012 30.7 8.7 45 157-202 212-260 (278)
No 1
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.1e-62 Score=426.78 Aligned_cols=375 Identities=62% Similarity=1.004 Sum_probs=346.4
Q ss_pred CccchhhhhccCcceeccCccccc--ccccccCCccchHHHHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHH
Q 016605 1 MMSFRSLLRSQRSLSLRPSKKFLA--LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHR 78 (386)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r 78 (386)
||+-|+..|.+ | +|+.+ ..++.+..+.+.+-.+..+...++|.++||++|+..+|+.|++++++.++.++|
T Consensus 1 mM~tr~t~R~q----l---r~~~t~~~~S~t~~ssls~~~a~~~~~~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HR 73 (380)
T KOG2900|consen 1 MMSTRYTARPQ----L---RKYATAAVKSTTASSSLSTLGALQYALSLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHR 73 (380)
T ss_pred CcchHHhhHHH----h---hhhhhhhhccchhhhhhhhhhhhHHHhhccCCcccccHHHHHHHhcchHHHHHHHHHHHHh
Confidence 89999876654 2 44444 333344455566677888888889999999999999999999999999999999
Q ss_pred hhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhH
Q 016605 79 HAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158 (386)
Q Consensus 79 ~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~ 158 (386)
+.|.+.+|+.|.+++|+|.+|..+|.||+++..++++.+..+.+..||+++.++.+++.|.++||++..|+++.|....+
T Consensus 74 k~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~f 153 (380)
T KOG2900|consen 74 KWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAF 153 (380)
T ss_pred hhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHH
Confidence 99999999999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEe
Q 016605 159 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSG 238 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~ 238 (386)
.+++++|++++.+|+++|++.|.++..++++||++|+..+++++|+.++.|.++....++++++++|++++++||.++++
T Consensus 154 k~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~aGikvCsG 233 (380)
T KOG2900|consen 154 KRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAGIKVCSG 233 (380)
T ss_pred HHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHhcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCcceeecCccccc
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 316 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~--~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~ 316 (386)
.|+|+||.++|.+.++..+..++.||++++|+.++|++|||+++ ..++..++++++++.+|+++|+.+|++++|+..+
T Consensus 234 GIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~ 313 (380)
T KOG2900|consen 234 GILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRLAAGRYTM 313 (380)
T ss_pred ccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhheechHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999987 6778999999999999999999999999999999
Q ss_pred ChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccccccchhhhhHHHhhhcC
Q 016605 317 SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 385 (386)
Q Consensus 317 ~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
....+.++|.+|||++|+|++++|+.+.+.++|..|+..+|+.|++. |.|.- +|+.|.|+..++.|
T Consensus 314 sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~-f~y~~--sse~en~ekva~a~ 379 (380)
T KOG2900|consen 314 SESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA-FKYDR--SSESENCEKVASAS 379 (380)
T ss_pred chhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc-cccCC--CccccchhhccCCC
Confidence 99999999999999999999999999999999999999999999984 65543 46888899887764
No 2
>PLN02389 biotin synthase
Probab=100.00 E-value=6.5e-59 Score=448.49 Aligned_cols=337 Identities=85% Similarity=1.335 Sum_probs=305.1
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
....||++|++.||+.+..+++..|+.++++++.+++|++++++++.|++|+.+|.||+++..++.+.+.++.+++|+|+
T Consensus 43 ~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl 122 (379)
T PLN02389 43 PRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVL 122 (379)
T ss_pred ccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHH
Confidence 46789999999999778888888888887777767799999999998999999999999986544445557779999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~ 208 (386)
+.++.+.+.|+++|++++++..+.++|..++++.++++.+|+.++++++++|.++++.+++|+++|++++++++|+.++.
T Consensus 123 ~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~ 202 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREY 202 (379)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHH
Confidence 99999999999999998766666677778999999999999889999999999999999999999999999999998889
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCH
Q 016605 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEI 288 (386)
Q Consensus 209 ~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~ 288 (386)
|++++++++|++++++++.++++|+++++++|+|+||+.+|+.+++.++++++.+++.++++.|+|.|||||.+.++++.
T Consensus 203 y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~ 282 (379)
T PLN02389 203 YPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEI 282 (379)
T ss_pred hCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999996558999999999999999998888999
Q ss_pred HHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 289 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
++.+++++++|+++|+..+++++||..++++.++.+|.+|||++|+|+-++|+.|.++++|++||+++||.|..-.+...
T Consensus 283 ~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~~~~~~ 362 (379)
T PLN02389 283 WEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGED 362 (379)
T ss_pred HHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999888999999999999999933999999999999999999999985544333
Q ss_pred cccchhhhhHHHhhhcC
Q 016605 369 EANVSEAESCQEAVSHS 385 (386)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (386)
.-..|++|+|+||+++|
T Consensus 363 ~~~~~~~~~~~~~~~~~ 379 (379)
T PLN02389 363 EERASEAERCEEAVSSS 379 (379)
T ss_pred cccccccchHHHHhccC
Confidence 33346899999999875
No 3
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-55 Score=410.45 Aligned_cols=311 Identities=55% Similarity=0.903 Sum_probs=294.6
Q ss_pred CCCCCHHHHHHhcCCChHH-HHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 50 RHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 50 ~~~ls~ee~~~l~~~~~~~-~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
+..||.+|+..||+.|+.+ ++..+|..+|++|+|+.|+++.+++++|..|+.+|.||++++++..+...++.+++|+|+
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIl 90 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEIL 90 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHH
Confidence 5789999999999987777 899999999999999999999999998888899999999998876777788889999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
+.++.+++.|+.+++++++|.. .+ ...+++.++++.+| +.+++++++.|.++++.+++|+++|++++++++||.++
T Consensus 91 e~Ak~ak~~Ga~r~c~~aagr~-~~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~ 167 (335)
T COG0502 91 EAAKKAKAAGATRFCMGAAGRG-PG--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPE 167 (335)
T ss_pred HHHHHHHHcCCceEEEEEeccC-CC--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHH
Confidence 9999999999999999988875 33 57899999999999 78999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVE 287 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s 287 (386)
.|++|+++++|++++++++.++++|+.++++.|+|+||+.+|+.+++..++++.. +++|+|+.|+|.|||||++.++++
T Consensus 168 ~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 168 FYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999963 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCC
Q 016605 288 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPS 364 (386)
Q Consensus 288 ~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~ 364 (386)
+.++++++|++|+++|+..|++++|+....+..+..+|.+|||++++|+.++|+.++..++|..||+++|+.|..+.
T Consensus 247 ~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~~ 323 (335)
T COG0502 247 PFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELLN 323 (335)
T ss_pred HHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998753
No 4
>PRK15108 biotin synthase; Provisional
Probab=100.00 E-value=1.8e-54 Score=415.15 Aligned_cols=319 Identities=55% Similarity=0.948 Sum_probs=287.4
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
..++||++|++.|++.+..+++..|..+++++|.++.++++.++++.|+.|+.+|.||+++..+..+.+.++.+++|||+
T Consensus 3 ~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~ 82 (345)
T PRK15108 3 HRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 82 (345)
T ss_pred ccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHH
Confidence 36899999999999888888888666665666544689999998888999999999999986443344456679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~ 208 (386)
+.++.+.+.|+++|++++++..+. ...++++.++++.+|+.++.+++++|.++++.+++|+++|+|++++++|+.++.
T Consensus 83 ~~a~~~~~~G~~~i~i~~~g~~p~--~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~ 160 (345)
T PRK15108 83 ESARKAKAAGSTRFCMGAAWKNPH--ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF 160 (345)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCC--cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHh
Confidence 999999999999999987653221 246799999999999888888899999999999999999999999999999899
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCH
Q 016605 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEI 288 (386)
Q Consensus 209 ~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~ 288 (386)
|.++++++++++++++++.++++|+.+++++|+|+||+.+|+.+++..+++++..+++++++.|+|.+||||++.++.+.
T Consensus 161 f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~ 240 (345)
T PRK15108 161 YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA 240 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999996547799999999999999998888899
Q ss_pred HHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 289 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
.+.+++++++|+++|+..+++++||..+.++.++.+|.+|||++|.|+.++|+.+.+.+++++||+++||+|++||+.|.
T Consensus 241 ~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~ 320 (345)
T PRK15108 241 FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAG 320 (345)
T ss_pred HHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999888888999999999999999977899999999999999999999999999995
Q ss_pred c
Q 016605 369 E 369 (386)
Q Consensus 369 ~ 369 (386)
.
T Consensus 321 ~ 321 (345)
T PRK15108 321 D 321 (345)
T ss_pred c
Confidence 5
No 5
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-51 Score=389.81 Aligned_cols=318 Identities=17% Similarity=0.214 Sum_probs=277.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEE--EeeeecCCCCCcCCCCCCCCCCCCCCC
Q 016605 39 IEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGV 116 (386)
Q Consensus 39 ~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~ 116 (386)
++++|+.+ |+++|++|++.||+.+ ++.+..+|+..|++++|++|+++ .++++ ||.|..+|.||+|+...+ ..
T Consensus 2 ~i~~kv~~---g~~ls~eeal~Ll~~d-l~~L~~~A~~vR~~~~G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~-~~ 75 (353)
T PRK08444 2 DLIEKLEN---NERLNQEEAVKLYDLD-LFTLGKYADKKRTKLHGKKVYFNVNRHINP-TNICADVCKFCAFSAHRK-NP 75 (353)
T ss_pred hHHHHHhc---CCCCCHHHHHHHhhcC-HHHHHHHHHHHHHHhcCCEEEEEecCCccc-ccccccCCccCCCccCCC-CC
Confidence 47899999 8999999999999764 45555666666667679999998 66888 999999999999987643 23
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCC
Q 016605 117 KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLE 183 (386)
Q Consensus 117 ~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~ 183 (386)
..| .+++|||++.++++.+.|+++|+++||.++. ..++++.++++.+|+. ++.++. ..|...
T Consensus 76 ~~y-~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~----~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~ 150 (353)
T PRK08444 76 NPY-TMSHEEILEIVKNSVKRGIKEVHIVSAHNPN----YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSY 150 (353)
T ss_pred ccc-cCCHHHHHHHHHHHHHCCCCEEEEeccCCCC----CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCH
Confidence 445 4899999999999999999999999986553 3578899999999964 566665 678889
Q ss_pred HHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 184 KHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
+|.+++|+++|++++++ +.|.+ +++++.|+++| +.++|++.++.++++|+++++++|||+|||.+|+.+++..++++
T Consensus 151 ~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~L 230 (353)
T PRK08444 151 EEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDL 230 (353)
T ss_pred HHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999 69999 99999999988 55888999999999999999999999999999999999999999
Q ss_pred CCCCCeEeeeeeeec----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---c
Q 016605 261 PTHPESVPINALLAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---F 333 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~----~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~ 333 (386)
+ +++++|+.|+|+ +|||+.+.++++..+.++++|++|+++|+ +.+++++|+..+....+.+|.+||||+ +
T Consensus 231 q--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~-i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~ 307 (353)
T PRK08444 231 Q--DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTI 307 (353)
T ss_pred c--cccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCC-CCccccccccCcHHHHHHHHhcCCccCcccc
Confidence 7 899999999999 89999988889999999999999999998 568999999999999999999999998 4
Q ss_pred cCCccccC------CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 334 TGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 334 ~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
.++++... ..++.+++.++|+++|++|++||+.|+..
T Consensus 308 ~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p~~R~t~y~~~ 350 (353)
T PRK08444 308 EKESIQSAAGAKSANGLSLEDFIFLIKDSGFIPVERDSLYNEL 350 (353)
T ss_pred ccccchhhccCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCee
Confidence 44544322 25789999999999999999999999875
No 6
>PRK06256 biotin synthase; Validated
Probab=100.00 E-value=6.2e-49 Score=378.59 Aligned_cols=322 Identities=34% Similarity=0.564 Sum_probs=284.3
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHhcCCC--hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCC
Q 016605 36 AAAIEAERTIREGPRHDWSKDDIKSIYDSP--VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD 113 (386)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~--~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~ 113 (386)
.+.++++++++ |+.+|++|++.||+.+ ..+.+..+|...|++++|+.+.++.+++++|++|+.+|.||+++..+.
T Consensus 6 ~~~~~~~~~~~---g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~ 82 (336)
T PRK06256 6 DILKLARKLLE---GEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSS 82 (336)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCC
Confidence 46789999999 8999999999999753 456677777777888889999999998887999999999999986543
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHH
Q 016605 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 114 ~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~ 192 (386)
.....++.+++|+|++.++.+.+.|+.++++++++..+.. ..++++.++++.+++ .++.++++.|.++++.++.|++
T Consensus 83 ~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~--~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~Lke 160 (336)
T PRK06256 83 APVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG--KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKE 160 (336)
T ss_pred CCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc--hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHH
Confidence 2233466689999999999999999989988765543322 345789999999985 4677888899999999999999
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
+|++++.+++|+.+++|+++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++.++++++ ++.++++.|
T Consensus 161 aG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l 238 (336)
T PRK06256 161 AGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFL 238 (336)
T ss_pred hCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeeccc
Confidence 999999999999878999999999999999999999999999999999999999999999999999996 889999999
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHH
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
+|.||||+.+.++++.++++++++++|+++|+..|++++||.....+.+..+| +|||.+++|+ |+|+.|.+.++|++|
T Consensus 239 ~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~-~lt~~g~~~~~d~~~ 316 (336)
T PRK06256 239 NPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGN-YLTTVGQPATADLDM 316 (336)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECC-cccCCCCChHHHHHH
Confidence 99999999988889999999999999999999999999999655566788899 8999999999 999999999999999
Q ss_pred HHHcCCCcCCCCCc
Q 016605 353 FKVLGLTPKAPSFH 366 (386)
Q Consensus 353 i~~~G~~p~~~~~~ 366 (386)
|+++||.|...+..
T Consensus 317 ~~~~g~~~~~~~~~ 330 (336)
T PRK06256 317 IEDLGFEIELDALK 330 (336)
T ss_pred HHHCCCCcccCcch
Confidence 99999999665553
No 7
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=100.00 E-value=1e-47 Score=370.84 Aligned_cols=317 Identities=18% Similarity=0.214 Sum_probs=271.9
Q ss_pred HHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEE--EeeeecCCCCCcCCCCCCCCCCCCCCCc
Q 016605 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (386)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 117 (386)
|++|+++ |+++|++|++.||+.++.+.+..+|+.+|++++|+.|+++ .++++ |++|+.+|.||+++..... ..
T Consensus 1 ~~~~~~~---~~~ls~~e~~~L~~~~~~~~L~~~A~~vr~~~~g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~ 75 (351)
T TIGR03700 1 IREKVEA---GQRLSFEDGLFLYASDDLLTLGELAALVRERKHGDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PG 75 (351)
T ss_pred CchHHhC---CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCeEEEeccCCccc-ccccccCCccCceeCCCCC-cc
Confidence 3678888 8899999999999766666667777777777789999998 66886 9999999999999865422 23
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCCH
Q 016605 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (386)
Q Consensus 118 ~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~~ 184 (386)
.|. +++|||++.++.+.+.|++++++++|..+. ..++++.++++.+|+. ++.++. ..|..++
T Consensus 76 ~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~----~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPN----LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHH
Confidence 454 899999999999999999999999765432 3468999999999865 355432 2577889
Q ss_pred HHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
+.+++|+++|++++.+ ++|++ +++++.+++++ ++++++++++.++++|+++++++|+|+|||++|+.+++..+++++
T Consensus 151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~ 230 (351)
T TIGR03700 151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ 230 (351)
T ss_pred HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999985 89999 99999999876 688999999999999999999999999999999999999999997
Q ss_pred CCCCeEeeeeeeecC----CCCCCCC--CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---
Q 016605 262 THPESVPINALLAVK----GTPLQDQ--KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~----gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+++.+|+.|+|++ ||||++. ++++..+.++++|++|+++|+ +.+|++.|...+++..+.+|.+||||+
T Consensus 231 --~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~-i~~i~a~w~~~~~~~~~~~L~~Gand~ggt 307 (351)
T TIGR03700 231 --DETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDN-IPHIKAYWVMLGLKLAQVALAFGVNDLDGT 307 (351)
T ss_pred --HhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCC-CCcccccccccCHHHHHHHHhcCCCCCCcc
Confidence 7889999999994 9999876 778999999999999999998 678999999999989999999999998
Q ss_pred ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 333 FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 333 ~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
+.++++... ..++.+++..+|+++|++|++|++.|+.
T Consensus 308 ~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p~~r~~~y~~ 350 (351)
T TIGR03700 308 VVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVPVERDTLYNE 350 (351)
T ss_pred CccceeeccccCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCc
Confidence 334433322 3468999999999999999999999985
No 8
>PRK07360 FO synthase subunit 2; Reviewed
Probab=100.00 E-value=3.2e-47 Score=369.40 Aligned_cols=325 Identities=19% Similarity=0.245 Sum_probs=275.9
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHhcCCCh---HHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCC
Q 016605 35 SAAAIEAERTIREGPRHDWSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQS 109 (386)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~---~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~ 109 (386)
+-+.++++++++ |+++|++|++.||+.+. .+.+..+|+.+|++++|++|+++.. +++ |+.|+.+|.||+|+
T Consensus 5 ~~~~~~~~~~~~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~~~~~~~i~~-Tn~C~~~C~fC~~~ 80 (371)
T PRK07360 5 QIFEDILERARK---GKDLSKEDALELLETTEPRRIFEILELADRLRKEQVGDTVTYVVNRNINF-TNICEGHCGFCAFR 80 (371)
T ss_pred HHHHHHHHHHhc---CCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCccc-chhhhcCCccCCcc
Confidence 346789999999 89999999999997643 6778888888888888999998544 566 99999999999998
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE----------
Q 016605 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC---------- 177 (386)
Q Consensus 110 ~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~---------- 177 (386)
... .....|. ++.|||++.++++.+.|+++|+++||..+.. ..++++.++++.+|+. ++.++.
T Consensus 81 ~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~---~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~ 155 (371)
T PRK07360 81 RDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGLHPAA---DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAA 155 (371)
T ss_pred cCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCCCCCC---CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHH
Confidence 753 3444554 9999999999999999999999997654321 1368899999999963 455543
Q ss_pred -ecCCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 178 -TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 178 -t~g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
+.|..+++.+++|++||+++++- +.+.+ +++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+.++
T Consensus 156 ~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~ 235 (371)
T PRK07360 156 REDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDH 235 (371)
T ss_pred hhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHH
Confidence 46888999999999999999974 45666 78888888865 9999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEeeeeeeecC----CCCCCCCC----CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhh
Q 016605 254 LHTLATLPTHPESVPINALLAVK----GTPLQDQK----PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 325 (386)
Q Consensus 254 l~~l~~l~~~~~~v~~~~f~P~~----gT~l~~~~----~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l 325 (386)
+.++++++ +++++|..|+|++ |||+++.. +.+..+.++++|++|+++|+..++++++|..+++..++.+|
T Consensus 236 l~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l 313 (371)
T PRK07360 236 LLILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVAL 313 (371)
T ss_pred HHHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHH
Confidence 99999997 8899999999965 99997643 24677779999999999999888999999888887778899
Q ss_pred hcCcccc---ccCCccccCC------CCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 326 LAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 326 ~~Gan~~---~~g~~~~t~~------~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
.+|||++ ++++.+.+.. .++.+++.+||+++||+|++|++.|+..
T Consensus 314 ~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~~~y~~~ 367 (371)
T PRK07360 314 NCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDTLYEII 367 (371)
T ss_pred hcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCceeeecCCcchh
Confidence 9999999 7777344323 3699999999999999999999999876
No 9
>PRK05926 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-47 Score=364.79 Aligned_cols=319 Identities=18% Similarity=0.165 Sum_probs=269.2
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHhcCC---ChHHHHHHHHHHHHhhcCCCeeEEEEeeee-cCCCCCcCCCCCCCCC
Q 016605 35 SAAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSI-KTGGCSEDCSYCPQSS 110 (386)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i-~t~~C~~~C~fC~~~~ 110 (386)
+.+.++++|+++ |+++|++|++.||+. ++...+..+|+.+|++++|+.|+++.++++ .||.|..+|.||+|+.
T Consensus 13 ~~~~~~~~kv~~---g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~ 89 (370)
T PRK05926 13 SWLKTLFDDYLS---GARLSEEDALQLLLLTDAEDQRALWSFADLIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYA 89 (370)
T ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCCeEEEEEeeeeecCCCCCCCCCcccccc
Confidence 346779999999 899999999999943 455666777777777778999999999876 4999999999999875
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEec---------
Q 016605 111 RYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTL--------- 179 (386)
Q Consensus 111 ~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~--------- 179 (386)
. .+...++.+++|||++.++++ ..|+++|++++|..+ ...++++.++++.+++. ++.++...
T Consensus 90 ~--~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p----~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~ 162 (370)
T PRK05926 90 K--PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFP----SCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSK 162 (370)
T ss_pred C--CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCC----CCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHh
Confidence 4 233455669999999999998 689999999986543 24678999999999965 46554322
Q ss_pred --CCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 180 --GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 180 --g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
+..+++.+++|+++|++++++ +.|++ ++.++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++++
T Consensus 163 ~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l 242 (370)
T PRK05926 163 LDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHM 242 (370)
T ss_pred hcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHH
Confidence 446799999999999999998 59999 89999998855 78999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCeEeeeeeeecC----CCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhh
Q 016605 255 HTLATLPTHPESVPINALLAVK----GTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL 326 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~----gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~ 326 (386)
..+++++ +++++|..|+|++ +|++.. .+..+..+.++++|++|++|++ +.+++++|+.++.+..+.+|.
T Consensus 243 ~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n-~~~iqa~w~~~G~~~~q~~L~ 319 (370)
T PRK05926 243 SKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDN-FPNIKALWNYLGIEVALHLLS 319 (370)
T ss_pred HHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCC-CcccccCchhcCHHHHHHHHh
Confidence 9999997 8999999999944 888753 3357888899999999999997 689999999999888999999
Q ss_pred cCcccc---ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCc
Q 016605 327 AGANSI---FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFH 366 (386)
Q Consensus 327 ~Gan~~---~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~ 366 (386)
+||||+ +.++++... ...+.+++..+|+++|++|++||+.
T Consensus 320 ~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~ 368 (370)
T PRK05926 320 CGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSK 368 (370)
T ss_pred CCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCC
Confidence 999999 344544322 2467899999999999999999984
No 10
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=1.9e-46 Score=361.24 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=260.9
Q ss_pred CCHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHH
Q 016605 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (386)
Q Consensus 53 ls~ee~~~l~~~-~~~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~ 129 (386)
+|++|++.||+. ++.+.+..+|+.+|++++|++|+++.. +++ |++|+.+|.||+++... .....+. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~-T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIVGDTVTYVVNRNINF-TNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCeEEEEeeecccc-ccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999975 566777888888888888999998654 455 99999999999998643 2223354 89999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCCHHHHHHHHHhccC
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~~e~l~~Lk~aG~~ 196 (386)
.++.+.+.|+++|+|+||..+. ...+++.++++.+++. ++.++. +.|.++++.+++||+||++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~p~----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~ 153 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIHPD----LDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCCCC----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 9999999999999999764322 3567889999999865 455432 5788999999999999999
Q ss_pred eeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+++. +.|++ +++++++++++ ++++++++++.++++|+.+++++|+|++||.+|+.+++.++++++ ++..+|..|+
T Consensus 154 ~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~i 231 (343)
T TIGR03551 154 SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFV 231 (343)
T ss_pred cccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEE
Confidence 9984 67888 89999999876 999999999999999999999999999999999999999999996 7888999999
Q ss_pred ecC----CCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCccccC-
Q 016605 274 AVK----GTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTT- 341 (386)
Q Consensus 274 P~~----gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~- 341 (386)
|+| ||++.. .++++.++.++++|++|+++|+.+++++++|..+++..++.+|.+|||++ +.++++...
T Consensus 232 P~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~ 311 (343)
T TIGR03551 232 PLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAA 311 (343)
T ss_pred eccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceeccccccc
Confidence 977 999964 24579999999999999999998899999999998887899999999998 333433322
Q ss_pred -----CCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 342 -----PNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 342 -----~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
..++.+++..+|+++||+|++|++.|+
T Consensus 312 g~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~ 343 (343)
T TIGR03551 312 GASHGEYLSPEELEAIIEDAGRIPKQRTTLYE 343 (343)
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCeeecCCCCC
Confidence 357889999999999999999999986
No 11
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=100.00 E-value=6e-46 Score=358.13 Aligned_cols=310 Identities=17% Similarity=0.219 Sum_probs=261.6
Q ss_pred CCCCHHHHHHhcCCChHHHHHHHHHHHHhhcC-CCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
+++|++|++.||+.+..+.+..+|+.+|++++ |++|+++...++. |++|+.+|.||+++... +...++.+++|+|+
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei~ 78 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAP--GHPEGYVLSVEEIL 78 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCC--CCccccCCCHHHHH
Confidence 47999999999986666667777777777777 9999987664443 99999999999976432 21223458999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cE-----------EEEecCCCCHHHHHHHHHhcc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--ME-----------VCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~-----------i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
+.++.+.+.|+++|+++||..+. ...+++.++++.+++.+ +. ++.++|..+++.+++|+++|+
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~----~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~ 154 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPD----LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGL 154 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCC
Confidence 99999999999999998765332 24567778888887543 32 233578778999999999999
Q ss_pred Ceeec-ccCch-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 196 TAYNH-NLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 196 ~~v~i-~le~~-~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
++++. ++|++ +++++.+.+. .++++++++++.++++|+.+++++|+|+|||.+|+.+++.++++++ ++.++|..|
T Consensus 155 ~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~f 232 (340)
T TIGR03699 155 DSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAF 232 (340)
T ss_pred CcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEE
Confidence 99995 79999 8999999775 4899999999999999999999999999999999999999999996 778888888
Q ss_pred eec----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 273 LAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 273 ~P~----~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
+|. +|||+++.++++.++.++++|++|+++|+ +++++++|..++.+.++.+|.+|||++ +..+.+.++.+.+
T Consensus 233 IP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~ 311 (340)
T TIGR03699 233 IPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGAT 311 (340)
T ss_pred EeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCC
Confidence 885 59999988889999999999999999999 889999999898888899999999993 3434488877766
Q ss_pred h----hHHHHHHHHcCCCcCCCCCcccc
Q 016605 346 F----DADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 346 ~----~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
. +++.+||+++|++|++|++.|++
T Consensus 312 ~~~~~~~~~~~i~~~g~~~~~r~~~y~~ 339 (340)
T TIGR03699 312 HRASREEIIRIIREAGFIPAQRDTLYNI 339 (340)
T ss_pred CCCCHHHHHHHHHHcCCCeeeecCcccc
Confidence 6 99999999999999999999986
No 12
>PRK08445 hypothetical protein; Provisional
Probab=100.00 E-value=7e-46 Score=355.90 Aligned_cols=310 Identities=15% Similarity=0.188 Sum_probs=256.5
Q ss_pred CCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEE---eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHH
Q 016605 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCT---LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (386)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~---~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI 127 (386)
+++|++|++.||+..+.+.+..+|+.+|++++|+++.++. ++++ |++|+.+|.||+++..++.. ..| .+++|+|
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~vr~~~~g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~eeI 78 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALERKQELHPEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEEI 78 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHHH
Confidence 5899999999997666666677777777777788876544 4777 99999999999998754322 455 5899999
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEE-e----------cCCCCHHHHHHHHHhc
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCC-T----------LGMLEKHQAIELKKAG 194 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~-t----------~g~l~~e~l~~Lk~aG 194 (386)
++.++++.+.|.++|+++||..+ ....+++.++++.+++.. +.++. + .+...+|.+++||++|
T Consensus 79 ~~~~~~a~~~g~~~i~~~gg~~~----~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG 154 (348)
T PRK08445 79 DKKIEELLAIGGTQILFQGGVHP----KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKG 154 (348)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 99999999999999999886533 245788999999998653 44321 1 1233489999999999
Q ss_pred cCeee-cccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 195 LTAYN-HNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 195 ~~~v~-i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+++++ .++|++ +++++.+++ ..+.++|+++++.++++|+++++++|+|++||.+|+.+++..+++++ +++.+|..
T Consensus 155 l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~ 232 (348)
T PRK08445 155 LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRA 232 (348)
T ss_pred CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeE
Confidence 99997 589999 899999977 55899999999999999999999999999999999999999999997 66766666
Q ss_pred ee----ecCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 272 LL----AVKGTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 272 f~----P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
|+ +.+|||+.. .+.++..+.++++|++|+++|+ +.+++++|..++...++.+|.+|||++ +.++++..
T Consensus 233 fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~ 311 (348)
T PRK08445 233 FILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVK 311 (348)
T ss_pred EeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCC-CCCccCCCcccCHHHHHHHHhcCCccCccccccccchh
Confidence 55 347999874 3458999999999999999998 789999999888888899999999998 44454433
Q ss_pred C----CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 341 T----PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 341 ~----~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
. .+.+.+++..+|+++||+|++||+.|++.
T Consensus 312 ~ag~~~~~~~~~~~~~i~~~g~~p~~r~t~y~~~ 345 (348)
T PRK08445 312 AAGASFRMNQAEMIELIKDIGEIPAKRNTAYEIL 345 (348)
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCeeeecCCCCee
Confidence 2 34688999999999999999999999875
No 13
>PRK08508 biotin synthase; Provisional
Probab=100.00 E-value=2.2e-45 Score=343.54 Aligned_cols=273 Identities=36% Similarity=0.604 Sum_probs=245.7
Q ss_pred CeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHH
Q 016605 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 84 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~ 163 (386)
++|.++++++++|.+|+.+|.||+++..++...+.|+.+++|+|++.++++.+.|+.+|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 57899999999999999999999998755444456777899999999999999999999986544321 1 247799999
Q ss_pred HHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe
Q 016605 164 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (386)
Q Consensus 164 ~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~ 241 (386)
+++.+|+. ++.++.++|.++++.+++|+++|++++++++|+.++.|++++++++|++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999965 4567778999999999999999999999999999889999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHH
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 321 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~ 321 (386)
|+|||.+|+.+++.++++++ +++++++.|.|.+|||+.. ++.+.++.++++|++|+++|+..|++++|+.....+.+
T Consensus 160 GlGEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~ 236 (279)
T PRK08508 160 GLGESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQ 236 (279)
T ss_pred ecCCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhH
Confidence 99999999999999999997 7899999999999999975 56899999999999999999999999999965555678
Q ss_pred HhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCC
Q 016605 322 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 362 (386)
Q Consensus 322 ~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~ 362 (386)
..+|.+|||++++|+ |+|+.|.+.++|.+||+++||.|..
T Consensus 237 ~~~~~~g~n~~~~g~-~lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 237 YEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHHHhcCCcceeecC-cccCCCCChHHHHHHHHHcCCCcCc
Confidence 999999999999999 9999999999999999999999863
No 14
>PRK05927 hypothetical protein; Provisional
Probab=100.00 E-value=2e-45 Score=351.99 Aligned_cols=313 Identities=16% Similarity=0.117 Sum_probs=262.0
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcC-CCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCCCCcccCCCCHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 126 (386)
.++++|++|++.||+.++.+.+..+|+.+|++++ |+.|+++.+.+++ |+.|+.+|.||+|+...+ ....| .+++||
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~-~~~~y-~ls~ee 80 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPH-SSDAY-LLSFDE 80 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCccchhhhcCCccCCccCCCC-Ccccc-ccCHHH
Confidence 3789999999999976666666777766777766 7999976554443 999999999999986532 22334 699999
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE-----------EEEecCCCCHHHHHHHHHh
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME-----------VCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~-----------i~~t~g~l~~e~l~~Lk~a 193 (386)
|++.++++.+.|+++|+++||.++. ..++++.++++.+|+. ++. ++.+.|.++++.+++|+++
T Consensus 81 i~~~a~~~~~~G~~~i~i~gG~~p~----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~a 156 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLLQGGVHPQ----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDA 156 (350)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCC----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Confidence 9999999999999999998775432 4578999999999853 342 2455799999999999999
Q ss_pred ccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 194 GLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 194 G~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
|+++++. ++|++ +++++.+++.+ ++++|+++++.|+++|+++++++|+|+|||.+|+.+++..+++++ .+..+|.
T Consensus 157 Gl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~ 234 (350)
T PRK05927 157 GQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFY 234 (350)
T ss_pred CcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCee
Confidence 9999998 89999 78888888766 689999999999999999999999999999999999999999997 5667899
Q ss_pred eeeec----CCCCCCCC--CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc---cCCccccC
Q 016605 271 ALLAV----KGTPLQDQ--KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTT 341 (386)
Q Consensus 271 ~f~P~----~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~---~g~~~~t~ 341 (386)
.|+|+ ++||+... ++++.++.++++|++|+++|+. -++++.|+..+.+..+.+|.+||||+. +.+.+...
T Consensus 235 ~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~-~~i~~~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ 313 (350)
T PRK05927 235 SFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNF-DHIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKC 313 (350)
T ss_pred eeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCC-CcccCCccccCHHHHHHHHhCCCccccCCCccceeecc
Confidence 99997 58998753 2689999999999999999984 478889999888888999999999993 33433322
Q ss_pred ----CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 342 ----PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 342 ----~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
...+.+++.++|+++||+|++|++.|+..
T Consensus 314 ag~~~~~~~~~l~~~i~~~G~~~~~R~~~Y~~~ 346 (350)
T PRK05927 314 TGWDLQSSEEEICAMILSEGFIPVERNTFYRPI 346 (350)
T ss_pred CCCCCcCCHHHHHHHHHHcCCCeeeecCCCccc
Confidence 23468999999999999999999999876
No 15
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=8.5e-44 Score=371.66 Aligned_cols=327 Identities=17% Similarity=0.226 Sum_probs=274.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCC--ChHHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQSSRY 112 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~ 112 (386)
.+.|.+|+.+ |+++|.+|++.||+. ++++.+..+|+.+|++++|+.|+++.+ +++ ||.|+.+|.||+|+...
T Consensus 474 ~~~l~~~~~~---g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~G~~Vt~vvn~~In~-TN~C~~~C~FCafs~~~ 549 (843)
T PRK09234 474 LAALRAAERD---PAGLTDDEALALFTADGPALEAVCRLADDLRRDVVGDDVTYVVNRNINF-TNICYTGCRFCAFAQRK 549 (843)
T ss_pred HHHHHHHHhc---CCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhcCCeEEEEEeeceec-CCCCCCCCcccccccCC
Confidence 4456778888 889999999999963 456667777777777778999998665 455 99999999999998753
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEE-----------Eec
Q 016605 113 DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVC-----------CTL 179 (386)
Q Consensus 113 ~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~-----------~t~ 179 (386)
.....|. +++|||++.++++.+.|+++|+++||.++. ...+++.++++.+|+. ++.++ .+.
T Consensus 550 -~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~----~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~ 623 (843)
T PRK09234 550 -TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGIHPE----LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARL 623 (843)
T ss_pred -CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC----cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHc
Confidence 3344555 899999999999999999999999875432 3578899999999964 45542 235
Q ss_pred CCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHH
Q 016605 180 GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 256 (386)
Q Consensus 180 g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (386)
|..++|.+++|+++|+++++. +-+.+ +++++.+++++ +.++|+++++.++++|+++++++|||++||.+|+.+++.+
T Consensus 624 Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~ 703 (843)
T PRK09234 624 GLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRV 703 (843)
T ss_pred CCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHH
Confidence 788999999999999999998 45566 78888898855 8999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEeeeeeeec----CCCCCC----CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC
Q 016605 257 LATLPTHPESVPINALLAV----KGTPLQ----DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG 328 (386)
Q Consensus 257 l~~l~~~~~~v~~~~f~P~----~gT~l~----~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G 328 (386)
+++++ .++.+|..|+|+ ++||+. ..+.++..+.++++|++|+++|+.+++++++|++++...++.+|.+|
T Consensus 704 LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~G 781 (843)
T PRK09234 704 LRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGG 781 (843)
T ss_pred HHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcC
Confidence 99997 788999999994 478763 23568999999999999999998888999999999988889999999
Q ss_pred cccc---ccCCcccc----C--CCCChhHHHHHHHHcCCCcCCCCCccccccchhhhhH
Q 016605 329 ANSI---FTGEKLLT----T--PNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESC 378 (386)
Q Consensus 329 an~~---~~g~~~~t----~--~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~ 378 (386)
||++ +.+|++.. . ..++.+++..+|+++|++|++|++.|+.. .+++-
T Consensus 782 aNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R~t~Y~~~---~~~~~ 837 (843)
T PRK09234 782 ANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPARQRTTLYGPV---AAERL 837 (843)
T ss_pred CcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCcc---chhhh
Confidence 9999 44454442 2 24688999999999999999999999988 54443
No 16
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=6.8e-44 Score=345.86 Aligned_cols=315 Identities=20% Similarity=0.286 Sum_probs=268.9
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHhcCC---ChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCC
Q 016605 38 AIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~ 114 (386)
+.-++++++ +++||++|++.||+. +.++.+..+|+.+|++++|++++++.++++ |+.|+.+|.||+++..+.
T Consensus 24 ~~~~~~il~---g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~- 98 (371)
T PRK09240 24 AADVERALN---KDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK- 98 (371)
T ss_pred HHHHHHHHh---cCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC-
Confidence 345788999 889999999999974 456677888888888888999999999999 999999999999986532
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
... +.+++|||++.++.+.+.|+++|+++||..+. ...++++.++++.+++...++.++.|.++.+.++.|+++|
T Consensus 99 -~~~-~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~---~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aG 173 (371)
T PRK09240 99 -IKR-KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA---KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELG 173 (371)
T ss_pred -Ccc-ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC---CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcC
Confidence 223 56999999999999999999999999865432 1467899999999986533455566789999999999999
Q ss_pred cCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCC----CC
Q 016605 195 LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PE 265 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~ 265 (386)
++++++++||+ ++.|+.+++ +|++++++++++.++++|+. +++++|+|+||+.+|+.+++..+++|++. ..
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~ 253 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEY 253 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCce
Confidence 99999999999 999999974 67999999999999999996 99999999999999999999988888521 24
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc-ccChh---HHHhhhhcCccccccCCccccC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSMP---EQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~-~~~~~---~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+|+|+.|+|.+| ++.+.++++.++++++++++|+++|+..|++++|+. .++.. .+...+.+| |..++|. |+|+
T Consensus 254 sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~-y~~~ 330 (371)
T PRK09240 254 SISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGG-YADD 330 (371)
T ss_pred eeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCC-cCCC
Confidence 789999999999 999888999999999999999999999999999984 45432 235667776 8888887 7776
Q ss_pred ----------CCCChhHHHHHHHHcCCCcCCCCC
Q 016605 342 ----------PNNDFDADQLMFKVLGLTPKAPSF 365 (386)
Q Consensus 342 ----------~~~~~~~~~~~i~~~G~~p~~~~~ 365 (386)
++++.+++++||+++||.|+.-|-
T Consensus 331 ~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~~ 364 (371)
T PRK09240 331 HKELEQFEISDDRSVEEVAAALRAKGLQPVWKDW 364 (371)
T ss_pred CCCcCCccCCCCCCHHHHHHHHHHCCCeeccchh
Confidence 699999999999999999987654
No 17
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=100.00 E-value=1.2e-42 Score=329.51 Aligned_cols=294 Identities=51% Similarity=0.882 Sum_probs=252.5
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCc
Q 016605 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST 140 (386)
Q Consensus 61 l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~ 140 (386)
||+.|..+++..|++.+++.++|+.+.+++++++.|++|+++|.||+++..+..+...++.+++++|+++++.+.+.|++
T Consensus 1 ~~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 80 (296)
T TIGR00433 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGAT 80 (296)
T ss_pred CccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCC
Confidence 45567888999999999988889999999999987999999999999876532223345568999999999999889999
Q ss_pred EEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHH
Q 016605 141 RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDE 220 (386)
Q Consensus 141 ~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~ 220 (386)
.+++++++..+.. ....+.+.++.+.+++.++.++++.|.+++|.++.|+++|++.+.+++|+.+++|+++++++++++
T Consensus 81 ~~~l~~~g~~~~~-~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~ 159 (296)
T TIGR00433 81 RFCLVASGRGPKD-REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDD 159 (296)
T ss_pred EEEEEEecCCCCh-HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHH
Confidence 9877554333222 122344555555555678888888899999999999999999999999933899999998899999
Q ss_pred HHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 221 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++++++.++++|+.+++++|+|++|+.+++.++++++++++ ++.+.++.|+|.|||++.+.++++.++++++++.+|+
T Consensus 160 ~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~ 237 (296)
T TIGR00433 160 RVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARI 237 (296)
T ss_pred HHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 8899999999999999999888999999999999999
Q ss_pred hCCCcceeecCcc-cccChhHHHhhhhcCccccccCCccccCCCCChh-HHHHHHHHcCC
Q 016605 301 VMPKAMVRLSAGR-VRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFD-ADQLMFKVLGL 358 (386)
Q Consensus 301 ~lp~~~i~i~~g~-~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~-~~~~~i~~~G~ 358 (386)
++|+..+++.+++ ..++...+..++.+|||.++.|+ |+|+.|.... +|..||+++||
T Consensus 238 ~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~-~~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 238 IMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGD-YLTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred HCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcC-cccCCCCCCcHHHHHHHHHcCC
Confidence 9999888888776 46665555569999999999998 9999999999 99999999997
No 18
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=5.8e-42 Score=357.93 Aligned_cols=328 Identities=19% Similarity=0.208 Sum_probs=277.6
Q ss_pred ccchHHHHHHHHhhcCCCCCCCHHHHHHhcCC--ChHHHHHHHHHHHHhhcCCC-----eeEEEE--eeeecCCCCCcCC
Q 016605 33 SASAAAIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFR-----EVQQCT--LLSIKTGGCSEDC 103 (386)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~~l~~aa~~~r~~~~g~-----~v~~~~--~i~i~t~~C~~~C 103 (386)
..+.+.++++|+++ |++||.+|++.||+. ++++.+..+|+.+|++++|+ .|+++. ++++ |+.|..+|
T Consensus 10 ~~~~~~~~l~k~~~---g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~~G~~~~~~~Vty~~n~~In~-Tn~C~~~C 85 (843)
T PRK09234 10 TASAMRRALRRARD---GVTLDVDEAAVLLTARGDDLADLCASAARVRDAGLGAAGRPGVVTYSRKVFIPL-TRLCRDRC 85 (843)
T ss_pred CHHHHHHHHHHHHc---CCCCCHHHHHHHhcCCCccHHHHHHHHHHHHHHHcCCcccCceEEEEeEEEecC-CCCCCCCC
Confidence 34557889999999 899999999999853 45566677777777777798 899885 4555 99999999
Q ss_pred CCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------ChhhHHHHHHHHHHHhh-
Q 016605 104 SYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNFNQILEYVKDIRD- 170 (386)
Q Consensus 104 ~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g------------e~~~~~~l~~~i~~ik~- 170 (386)
.||+|+...+ . ..++.+++|||++.++++.+.|++++++++|..+... ....++++.++++.+++
T Consensus 86 ~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~ 163 (843)
T PRK09234 86 HYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE 163 (843)
T ss_pred CcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999986542 2 3445699999999999999999999999988765421 11246899999999985
Q ss_pred cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHh------hhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS------KIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 171 ~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~------~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
.++..+++.|.++.+.++.|+++|++ +.+.+|+. ++.|. .+++++.+++++++++.++++|+++++++|+|+
T Consensus 164 ~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi 242 (843)
T PRK09234 164 TGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI 242 (843)
T ss_pred cCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 68888899999999999999999997 78999997 77764 455777899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhH
Q 016605 244 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPE 320 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~ 320 (386)
|||.+|+.+++..+++++. +++.+.++.|.|.+||+|.+.+.++.+++++++|++|+++|+ .++|+++|...+...
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~-~~~Iqa~~~l~g~~~ 321 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGP-KMRIQAPPNLVSGDE 321 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-CceeeCccccCCHHH
Confidence 9999999999999999963 478899999999999999998999999999999999999987 479999999988888
Q ss_pred HHhhhhcCcccc-----ccCCcccc--CCCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 321 QALCFLAGANSI-----FTGEKLLT--TPNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 321 ~~~~l~~Gan~~-----~~g~~~~t--~~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
.+.+|.+||||+ ++++ ..+ ...++.+++.++|+++||+|++|++.|+.
T Consensus 322 ~~~~L~~GanD~GG~~~~~~d-~~~p~~~~~~~~~l~~~~~~aG~~~~eR~t~Y~~ 376 (843)
T PRK09234 322 CAALLGAGIDDWGGVSPLTPD-HVNPERPWPQLDELAAVTAEAGFTLVERLTAYPE 376 (843)
T ss_pred HHHHHhcCCCcccchhhhHhh-ccCccCCCCCHHHHHHHHHHcCCCcccccCccHh
Confidence 899999999998 1222 222 23468999999999999999999999965
No 19
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=100.00 E-value=6.1e-42 Score=331.88 Aligned_cols=314 Identities=19% Similarity=0.250 Sum_probs=264.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHhcCCC---hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCC
Q 016605 38 AIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~ 114 (386)
+.-++++++ |+++|++|++.|++.+ +.+.+..+|+.+|++++|+.++++.++++ |+.|+++|.||+++....
T Consensus 23 ~~~~~~~l~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~- 97 (366)
T TIGR02351 23 AADVERALN---KRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRFGNTISLFTPLYL-SNYCSNKCVYCGFSMSNK- 97 (366)
T ss_pred HHHHHHHHh---CCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHcCCEEEEEeeeeE-CccccCCCCcCCCCCCCC-
Confidence 445789999 8999999999999754 46667777777788888999999999997 999999999999986432
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
.++ +.++.|||.+.++.+.+.|+++|+++||..+.. ..++++.++++.+++....+.+..+.++.+.++.|+++|
T Consensus 98 -~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~---~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aG 172 (366)
T TIGR02351 98 -IKR-KKLNEEEIEREIEAIKKSGFKEILLVTGESEKA---AGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAG 172 (366)
T ss_pred -Ccc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC---CCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcC
Confidence 333 458999999999999999999999997654322 457899999999986532222334568999999999999
Q ss_pred cCeeecccCch-HHHHhhhC---CCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCC----CC
Q 016605 195 LTAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PE 265 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~---~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~ 265 (386)
++++++++||+ ++.|++++ ++|++++++++++.++++|+. +++++|+|+|++.+|..+++..++.|+++ ..
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~ 252 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEI 252 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999 99999998 577999999999999999998 99999999999999999988888877531 26
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc-ccCh---hHHHhhhhcCccccccCCccccC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSM---PEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~-~~~~---~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+|+++.++|.+| ++....+++..+++++++.+|+++|+..|++++|+. .++. +.+...+.+ +|..++|. |+|+
T Consensus 253 sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~-y~~~ 329 (366)
T TIGR02351 253 SISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGG-YSSE 329 (366)
T ss_pred cccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeecc-CcccCCCC-cCCC
Confidence 899999999999 998888899999999999999999999999999984 4442 333445666 77777777 7777
Q ss_pred CC----------CChhHHHHHHHHcCCCcCCCC
Q 016605 342 PN----------NDFDADQLMFKVLGLTPKAPS 364 (386)
Q Consensus 342 ~~----------~~~~~~~~~i~~~G~~p~~~~ 364 (386)
.+ ++++++++||+++||.|+.-|
T Consensus 330 ~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~~~ 362 (366)
T TIGR02351 330 KKGLEQFEISDERSVAEVEEDLRSKGLQPVWKD 362 (366)
T ss_pred CCCcCcccCCCCCCHHHHHHHHHHCCCeecccc
Confidence 66 999999999999999998654
No 20
>PRK07094 biotin synthase; Provisional
Probab=100.00 E-value=2.5e-41 Score=324.05 Aligned_cols=274 Identities=22% Similarity=0.367 Sum_probs=242.3
Q ss_pred CCHHHHHHhcCCChH---HHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHH
Q 016605 53 WSKDDIKSIYDSPVL---DLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (386)
Q Consensus 53 ls~ee~~~l~~~~~~---~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~ 129 (386)
+|++|++.||+.++. +.+..+|+.+|++++|+++++++++++ |++|+++|.||+++... ....+++ +++++|++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~~ 77 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEILE 77 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHHH
Confidence 689999999986532 237777777787888999999999999 99999999999987532 2223444 79999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HH
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~ 207 (386)
.++.+.+.|++.|+++||..+. ...+++.++++.+++ .++.+.++.|..+++.++.|+++|++++.+++|+. ++
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDPY----YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999998764322 245789999999987 57777788899999999999999999999999999 99
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+++.+++++++++++++++.++++|+.+++++|+|+ |||.+++.++++++++++ ++.++++.|+|.||||+.+.+++
T Consensus 154 ~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~ 231 (323)
T PRK07094 154 LYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGG 231 (323)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCC
Confidence 999999999999999999999999999999999999 999999999999999996 88999999999999999998889
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
+.++.+++++++|+++|+..++..++|..+++..+..+|.+|||++++.
T Consensus 232 ~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~~ 280 (323)
T PRK07094 232 SLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPN 280 (323)
T ss_pred CHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecCC
Confidence 9999999999999999998888888998888888899999999999643
No 21
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.5e-41 Score=321.01 Aligned_cols=324 Identities=18% Similarity=0.219 Sum_probs=258.6
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHH-hhcCCCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHR-HAHNFREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r-~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~ 114 (386)
.+.+++++.+ +++++.+|++.||+..+...+...|+..| ....++.++++.+++++ ||.|..+|.||+|+... .
T Consensus 8 ~~~~~e~a~~---~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~-~ 83 (370)
T COG1060 8 VDEIVEKALN---GERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKP-G 83 (370)
T ss_pred HHHHHHHHhc---cCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCC-C
Confidence 6789999999 99999999999998766665666665555 77778888888765554 99999999999999765 2
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcE------E---EEecCC
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GME------V---CCTLGM 181 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~------i---~~t~g~ 181 (386)
..++ +.+++|||.+.++++.+.|+++++|+||.+|.. .++++.++++.+|+. .+. + ....+.
T Consensus 84 ~~~~-y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~----~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~ 158 (370)
T COG1060 84 DPKA-YTLSPEEILEEVREAVKRGITEVLIVGGEHPEL----SLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGL 158 (370)
T ss_pred Cccc-cccCHHHHHHHHHHHHHcCCeEEEEecCcCCCc----chHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCC
Confidence 2233 459999999999999999999999999876643 345677777777642 111 1 112344
Q ss_pred CCHHHHHHHHHhccCeeecccCch--HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHh
Q 016605 182 LEKHQAIELKKAGLTAYNHNLDTS--REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLA 258 (386)
Q Consensus 182 l~~e~l~~Lk~aG~~~v~i~le~~--~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~ 258 (386)
..+|.+++||++|++.+..+-... +++.+.++++ .+++.|+++++.|+++||+.++++++|++|+.+|+.+++..++
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir 238 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIR 238 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHH
Confidence 567779999999999999866555 5666666654 4999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEeeeeeeecC-----CC-CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 259 TLPTHPESVPINALLAVK-----GT-PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 259 ~l~~~~~~v~~~~f~P~~-----gT-~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
++| -...+|+.|+|.+ ++ ++...+..+..+++++++++|++++..+-.+.++|+..+....+.++.+||||+
T Consensus 239 ~lQ--~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ 316 (370)
T COG1060 239 DLQ--DETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDL 316 (370)
T ss_pred HHH--HHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccC
Confidence 997 3444566666544 44 555667789999999999999999986666889999998888899999999998
Q ss_pred c---cCCcccc------CCCCChhHHHHHHHHcCCCcCCCCCcccccc
Q 016605 333 F---TGEKLLT------TPNNDFDADQLMFKVLGLTPKAPSFHEGEAN 371 (386)
Q Consensus 333 ~---~g~~~~t------~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 371 (386)
- .+|.+.. ...++.+|+.++|+++||+|++||+.|+...
T Consensus 317 ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt~Y~~~~ 364 (370)
T COG1060 317 GGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIPVERDTLYRILY 364 (370)
T ss_pred cCCCcccccccccccccCCCCCHHHHHHHHHHcCCCeeeeccccceee
Confidence 2 2232222 2468999999999999999999999998764
No 22
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=100.00 E-value=4.1e-40 Score=313.09 Aligned_cols=268 Identities=19% Similarity=0.289 Sum_probs=226.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
+++ |++|+.+|.||+++..+.. . +.+.+++|+|++.++.+.+.|+++|+|++|..+. ...+++.++++.+++.
T Consensus 9 i~~-T~~C~~~C~FC~~~~~~~~-~-~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 9 INF-TNICVGKCKFCAFRAREKD-K-DAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQ----LDIEYYEELFRAIKQE 81 (309)
T ss_pred ecC-ccccccCCccCCCccCCCC-C-CcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHHH
Confidence 455 9999999999999864321 2 2345999999999999999999999999765432 3467888899998865
Q ss_pred C--cEEE-----------EecCCCCHHHHHHHHHhccCeee-cccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCee
Q 016605 172 G--MEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINV 235 (386)
Q Consensus 172 g--~~i~-----------~t~g~l~~e~l~~Lk~aG~~~v~-i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v 235 (386)
+ +.++ .+.|..+++.+++|+++|+++++ +++|++ +++++.+++++ ++++++++++.++++|+++
T Consensus 82 ~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~ 161 (309)
T TIGR00423 82 FPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPT 161 (309)
T ss_pred CCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3 3332 14566789999999999999997 599999 89999998755 9999999999999999999
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC----CCC-CCCC--CCCCHHHHHHHHHHHHHhCCCccee
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTP-LQDQ--KPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~----gT~-l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
++++|+|++||.+|+.+++.++++++ ++..+|+.|+|.| +|| ++.. ++++..+.++++|++|+++| .+.+
T Consensus 162 ~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp-~~~~ 238 (309)
T TIGR00423 162 TATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN-NIRN 238 (309)
T ss_pred eeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC-CCcc
Confidence 99999999999999999999999996 7888898899854 888 7654 77899999999999999999 4778
Q ss_pred ecCcccccChhHHHhhhhcCcccc---ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
++++|..++++.++.+|.+|||++ +.++.+... ..++.+++..+|+++|++|++|++.|++
T Consensus 239 i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~~y~~ 308 (309)
T TIGR00423 239 IQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDTLYNI 308 (309)
T ss_pred ceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCCCCCc
Confidence 999999999887899999999998 334433322 2578999999999999999999999986
No 23
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=4.9e-39 Score=316.46 Aligned_cols=324 Identities=19% Similarity=0.281 Sum_probs=270.4
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHhcCCC---hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCC
Q 016605 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSS 110 (386)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~ 110 (386)
...+.++++|+++ +++||.+|++.||+.+ .++.|..+|+.+|++++|+++.+++++++ ||.|+.+|.||+|+.
T Consensus 30 ~~~v~~il~Kal~---~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyi-SN~C~n~C~YCgfs~ 105 (469)
T PRK09613 30 KDEIREILEKAKE---KKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRR 105 (469)
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccc-cCCCCCCCccCCCcc
Confidence 3447889999999 8999999999999753 56778888888898889999999999998 999999999999986
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----C-c-EEEEecCCCCH
Q 016605 111 RYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEK 184 (386)
Q Consensus 111 ~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g-~-~i~~t~g~l~~ 184 (386)
.. ....++ .+++|||++.++.+.+.|++++++++|..++ ...++++.++++.+++. | + .+.++.|.++.
T Consensus 106 ~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~---~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~ 180 (469)
T PRK09613 106 SN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP---NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTV 180 (469)
T ss_pred CC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC---CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCH
Confidence 53 334444 5899999999999999999999999876543 24578899999998863 2 2 47788899999
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.+++|+++|++++.+..||. +++|+++++ +++|+.++++++.+.++|+. |++++|+|++++.+|..+++..++.
T Consensus 181 eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~ 260 (469)
T PRK09613 181 ENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEH 260 (469)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999 899999876 57999999999999999998 9999999999999999999888887
Q ss_pred C----CCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccccc
Q 016605 260 L----PTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT 334 (386)
Q Consensus 260 l----~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~ 334 (386)
| +.++++|+|..|.|.+|||+.+.+ +++.++++++++++|+++|...|.+++. .. +...-..+..|++.+..
T Consensus 261 L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStR-E~--~~~r~~~~~~gvt~~sa 337 (469)
T PRK09613 261 LEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTR-ES--AELRREVLELGVSQISA 337 (469)
T ss_pred HHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecC-CC--HHHHHHHHhhcceeecc
Confidence 7 334788999999999999997654 5899999999999999999998888862 21 23334445556655521
Q ss_pred C-----------------CccccCCCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 335 G-----------------EKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 335 g-----------------~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
| ++|...+.++++|++++|.+.||.|+.=+.-|+.
T Consensus 338 gs~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p~~ctacyr~ 389 (469)
T PRK09613 338 GSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIPSFCTACYRL 389 (469)
T ss_pred cccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeEEEeeccccC
Confidence 1 2355568899999999999999999876555543
No 24
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=100.00 E-value=1.4e-39 Score=310.60 Aligned_cols=274 Identities=20% Similarity=0.292 Sum_probs=225.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------Chhh
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTN 157 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g------------e~~~ 157 (386)
..+++ ||+|+.+|.||+|+... +...++.+++|+|++.++.+.+.|++++++++|.++... -...
T Consensus 6 ~~i~~-tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~ 82 (322)
T TIGR03550 6 VFIPL-TRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDST 82 (322)
T ss_pred EEecc-ccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccH
Confidence 34677 99999999999998653 333455699999999999999999999999887655321 0012
Q ss_pred HHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhh----hCCCCCHHHHHHHHHHHHHc
Q 016605 158 FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSK----IITTRSYDERLETLKHVREA 231 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~----i~~~~s~~~~l~~i~~a~~~ 231 (386)
.+++.++++.+++ .++..+++.|.++++.++.|+++|++ +.+++|++ +.+++. +++++++++++++++.++++
T Consensus 83 ~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~ 161 (322)
T TIGR03550 83 LEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRL 161 (322)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 4678888888874 37777889999999999999999986 58889998 665543 34456789999999999999
Q ss_pred CCeeeEeEEeecCCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 232 GINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 232 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
|+.+++++|+|+|||.+|+.+++.++++++. ++..+.+.+|.|.||||+++.++++..+.++++|++|+++|+ ..+
T Consensus 162 Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~~~ 240 (322)
T TIGR03550 162 KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-DIS 240 (322)
T ss_pred CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-CCe
Confidence 9999999999999999999999999999962 245677889999999999988889999999999999999976 467
Q ss_pred ecCcccccChhHHHhhhhcCcccc-----ccCCccccCCC--CChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTPN--NDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~-----~~g~~~~t~~~--~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
|+++| .+....++.+|.+|||++ +.++ ..++.+ .+.+++.+||+++||+|++||+.|+.-
T Consensus 241 I~~~~-~l~~~~~~~~L~~Gand~~gt~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~p~~R~t~y~~~ 307 (322)
T TIGR03550 241 IQVPP-NLNREDYRLLLDAGIDDWGGVSPVTPD-HVNPEAPWPEIDELARATEEAGFTLKERLPVYPEY 307 (322)
T ss_pred eecCC-ccChHHHHHHHhcCCccccCcccCchh-hcCCCCCCCCHHHHHHHHHHcCCCcccccCccHhh
Confidence 88888 555445799999999995 3455 444333 689999999999999999999999654
No 25
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=100.00 E-value=1.2e-36 Score=293.07 Aligned_cols=280 Identities=21% Similarity=0.332 Sum_probs=226.8
Q ss_pred CCCeeEEEEe--eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh---
Q 016605 82 NFREVQQCTL--LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--- 156 (386)
Q Consensus 82 ~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~--- 156 (386)
.|+.|++... +++ |++|+.+|.||+++... + .++.+++|+|++.++++.+.|+++++++||..+...-+.
T Consensus 4 ~~~~vt~~~~~~i~~-Tn~C~~~C~fC~~~~~~--~--~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~ 78 (336)
T PRK06245 4 MSKIVTYSRNVFIPL-TYECRNRCGYCTFRRDP--G--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKE 78 (336)
T ss_pred CCCeeEeecceeeec-cccccCCCccCCCcCCC--C--ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhh
Confidence 4788888765 455 99999999999987542 2 223699999999999999999999999988654322000
Q ss_pred -----hHHHHHHHHHHHh----hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhh---CCCCCHHHHHH
Q 016605 157 -----NFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERLE 223 (386)
Q Consensus 157 -----~~~~l~~~i~~ik----~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i---~~~~s~~~~l~ 223 (386)
.++.+.+.++++. +.++..+++.+.++++.++.|+++|+. +.+.+|+. +.+++.+ +++++++++++
T Consensus 79 ~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~ 157 (336)
T PRK06245 79 QLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLE 157 (336)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHH
Confidence 0234555554443 345556778899999999999999864 57788998 7777544 56778999999
Q ss_pred HHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 224 TLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 224 ~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+++.+++.|+.+++++|+|+|||.+|+.+++.++++++. +++.+.++.|+|.++|++...+.++.++++++++++|+
T Consensus 158 ~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 158 TIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred HHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998863 25778899999999999987778899999999999999
Q ss_pred hCCCcceeecCcccccChhHHHhhhhcCcccc-----ccCCccccCC--CCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTP--NNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 301 ~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~-----~~g~~~~t~~--~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
++|+ .++++.++ +++...++.+|.+|||++ ..++ ++++. .++.+++.++|+++|++|++|++.|+..
T Consensus 238 ~l~~-~i~i~~~~-~~~~~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~~~ 311 (336)
T PRK06245 238 ILPP-DISIQVPP-NLNRDTGLLLLDAGADDLGGISPVTKD-YVNPEYPWPDIEELREILEEAGWPLKERLPVYPKY 311 (336)
T ss_pred HCCC-CceEecCC-ccchHHHHHHHhcCCccccCCccCCCc-eeCCCCCCCCHHHHHHHHHHcCCCcccccCcchhh
Confidence 9987 35677765 677777788999999999 3344 55543 5789999999999999999999999875
No 26
>PRK06267 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=284.31 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCC--cCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEE
Q 016605 66 VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRF 142 (386)
Q Consensus 66 ~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v 142 (386)
+...+..+|+..|++++|++|++++++++ |++|+ .+|.||+++..... ..+.++.+++|+|+++++.+.+.|++.+
T Consensus 5 ~~~~L~~~A~~ir~~~fG~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~ 83 (350)
T PRK06267 5 EILENSIKAFKLTEKHHGNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLE 83 (350)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 44556667777777778999999999998 99999 89999999864321 1123446899999999999999999877
Q ss_pred EEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHH
Q 016605 143 CMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220 (386)
Q Consensus 143 ~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~ 220 (386)
+++||.. ...+++.++++.+++. +..++++.|.++.+.+..++.+|+ .+++|+. +++|+.+++++++++
T Consensus 84 ~lsgG~~------~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed 154 (350)
T PRK06267 84 FISGGYG------YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDK 154 (350)
T ss_pred EEecCCC------CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHH
Confidence 6766532 2234455555555433 345677888888888877777775 4689999 899999999999999
Q ss_pred HHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 221 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++++++.++++|+.+++++|+|+||+.+|+.++++++++++ ++.+.++.|+|.|||++.+.++++.++++++++++|+
T Consensus 155 ~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 155 IKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 8899999999999999999899999999999999999
Q ss_pred hCCCcceeecCcccccChhHHHhhhhcCcccc----ccCCccccCCCCChhHHHHHH
Q 016605 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSI----FTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 301 ~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~----~~g~~~~t~~~~~~~~~~~~i 353 (386)
++|+..+ +.++|.....+.+. .+.+|||.+ +.|. |+|+.|.++++++++-
T Consensus 233 ~lP~~~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~-ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 233 NFPKIKI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM-YGTKEGKRVENEIRWT 286 (350)
T ss_pred HCCCCCc-chhhHhHhcchhhH-HhhcCcceeeccchhcc-CcccCCCCHHHHHHHh
Confidence 9999777 77778543334444 777999999 6777 9999999999998776
No 27
>PRK05481 lipoyl synthase; Provisional
Probab=99.93 E-value=7.7e-24 Score=198.65 Aligned_cols=232 Identities=20% Similarity=0.276 Sum_probs=177.4
Q ss_pred CHHHHHHhcCCChHHHHHHHHHHHHh--hcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHH
Q 016605 54 SKDDIKSIYDSPVLDLLFHGAQVHRH--AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAA 131 (386)
Q Consensus 54 s~ee~~~l~~~~~~~~l~~aa~~~r~--~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~ 131 (386)
+..|++.||+..++..+...|...+. .+.++.+.+ +.+ |++|+.+|.||.++... + +.+++++|++++
T Consensus 20 ~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~f---i~i-s~GC~~~C~FC~i~~~r--~----~s~~~eeI~~ea 89 (289)
T PRK05481 20 EYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATF---MIL-GDICTRRCPFCDVATGR--P----LPLDPDEPERVA 89 (289)
T ss_pred hHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEEE---EEe-cccccCCCCCceeCCCC--C----CCCCHHHHHHHH
Confidence 46788899987666666777765555 445665554 335 99999999999987531 1 338999999999
Q ss_pred HHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 132 ~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
+++.+.|++++.++|+..+... ....+.+.++++.+++. ++. ++........+.+..|+++|.+.+.+.+++.++
T Consensus 90 ~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~ 168 (289)
T PRK05481 90 EAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPR 168 (289)
T ss_pred HHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHH
Confidence 9999999999999987643211 11346788888888753 333 333333345688999999999999999999888
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQK 284 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l~~~~ 284 (386)
+++.++++++++++++.++.++++ |+.+++++|+|+|||++|+.++++++++++ ++.+++..|.| |.. .+.-..
T Consensus 169 vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~~v~~ 245 (289)
T PRK05481 169 LYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHLPVER 245 (289)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccCCCCC
Confidence 999999999999999999999999 999999999999999999999999999996 89999999999 544 332122
Q ss_pred CCCHHHHHHHHHHHH
Q 016605 285 PVEIWEMIRMIATAR 299 (386)
Q Consensus 285 ~~s~~e~~~~~a~~R 299 (386)
....+...++..++.
T Consensus 246 ~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 246 YVTPEEFDEYKEIAL 260 (289)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344455444444444
No 28
>PRK12928 lipoyl synthase; Provisional
Probab=99.93 E-value=8.1e-24 Score=197.93 Aligned_cols=231 Identities=18% Similarity=0.259 Sum_probs=176.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH-hhcC-CCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHH
Q 016605 55 KDDIKSIYDSPVLDLLFHGAQVHR-HAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQ 132 (386)
Q Consensus 55 ~ee~~~l~~~~~~~~l~~aa~~~r-~~~~-g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~ 132 (386)
-.+++.||+...+..+...|...+ ..++ ++.+++ +.+ |++|+.+|.||.++.. . . ..++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tf---v~i-s~gC~~~C~FCa~~~g----~-~-~~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATF---LIM-GSICTRRCAFCQVDKG----R-P-MPLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEE---EEe-cccccCcCCCCCccCC----C-C-CCCCHHHHHHHHH
Confidence 567888887765555555554333 3333 555554 334 9999999999998742 1 2 2489999999999
Q ss_pred HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEE-EecCCC--CHHHHHHHHHhccCeeecccCchHH
Q 016605 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVC-CTLGML--EKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~-~t~g~l--~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
++.+.|+++++++|+..+... +...+++.++++.+++. ++.+. .+...+ ..+.++.|+++|.+.+++++|+.++
T Consensus 98 ~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~ 176 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPR 176 (290)
T ss_pred HHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHH
Confidence 999999999999887643221 12346788888888764 23332 233333 5788999999999999999998899
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC--CCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQDQ 283 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~--gT~l~~~ 283 (386)
+++.++++.+++++++.++.+++.| +.+++++|+|+|||.+|+.++++++++++ ++.+.+.+|.+-. ..|..
T Consensus 177 vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~-- 252 (290)
T PRK12928 177 LQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQ-- 252 (290)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCcee--
Confidence 9999999999999999999999999 99999999999999999999999999997 8999998887522 33333
Q ss_pred CCCCHHHHHHHHHHHHH
Q 016605 284 KPVEIWEMIRMIATARI 300 (386)
Q Consensus 284 ~~~s~~e~~~~~a~~R~ 300 (386)
...+++++..+-.++..
T Consensus 253 ~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 253 RYWTPEEFEALGQIARE 269 (290)
T ss_pred eccCHHHHHHHHHHHHH
Confidence 34567776666555554
No 29
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=4.1e-23 Score=206.17 Aligned_cols=268 Identities=20% Similarity=0.200 Sum_probs=189.8
Q ss_pred cccccccccccCCccchHHHHHHHHhhcCCCCCCCHHHHHHhcC------CChHHHHHHHHHHHHhhcC-CCeeEEEEee
Q 016605 20 KKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYD------SPVLDLLFHGAQVHRHAHN-FREVQQCTLL 92 (386)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~------~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i 92 (386)
-||.. -++..+ .+|+.+.+. +++|.+|+...|. .+..+++...+...+..+. ...-.+...+
T Consensus 100 ~pwg~--ltgirp-----~k~~~~~~~----~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~sLYi 168 (488)
T PRK08207 100 LPWGI--LTGIRP-----TKILHKLLD----EGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEVSIYI 168 (488)
T ss_pred CCCcc--eeeeCh-----HHHHHHHHH----cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCceEEEE
Confidence 35643 455566 678888877 5789999888764 2456778888877676653 1222233334
Q ss_pred eecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 93 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
+ -++||.+|.||+|+.....+.......-.+.+.++++.+.+ .++..++++|| +|+...+..++.+++.+.
T Consensus 169 h--IPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGG-TPt~L~~~~L~~Ll~~i~ 245 (488)
T PRK08207 169 G--IPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGG-TPTSLTAEELERLLEEIY 245 (488)
T ss_pred e--cCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCC-CccCCCHHHHHHHHHHHH
Confidence 4 47999999999997542111111000113444444443321 13556667654 555443444445555444
Q ss_pred HHh-h-cCc-EEEE---ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeEe
Q 016605 167 DIR-D-MGM-EVCC---TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSG 238 (386)
Q Consensus 167 ~ik-~-~g~-~i~~---t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~~~ 238 (386)
... . .++ ++.+ ++..++++.++.|+++|++++++++|++ +++++.+++.|++++++++++.++++|+ .++++
T Consensus 246 ~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~D 325 (488)
T PRK08207 246 ENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMD 325 (488)
T ss_pred HhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 321 1 133 4444 3457999999999999999999999999 8999999999999999999999999999 69999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp 303 (386)
+|+|+ |||.+++.++++++.+++ ++++.++.+.|.|||++.. ...++.++..+++..++..+.
T Consensus 326 LI~GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~ 393 (488)
T PRK08207 326 LIIGLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAK 393 (488)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999996 9999999999999999863 345677888888877765553
No 30
>PTZ00413 lipoate synthase; Provisional
Probab=99.92 E-value=7.4e-23 Score=192.56 Aligned_cols=197 Identities=21% Similarity=0.302 Sum_probs=162.2
Q ss_pred cCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--C
Q 016605 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (386)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g 172 (386)
..+.|..+|.||+++... . ...++++|+.+.++.+.+.|++.++++++..+.. .+...+.+.+.|+.|++. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccCCC
Confidence 388999999999997432 1 2448999999999999999998777777765432 235678999999999964 5
Q ss_pred cEEEEecCCC--CHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHc---CCeeeEeEEeecCCC
Q 016605 173 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 246 (386)
Q Consensus 173 ~~i~~t~g~l--~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~---Gi~v~~~~i~Glget 246 (386)
+.+++..|.+ +++.++.|+++|++.+++++||.+++|+.|+. .++|++.+++|+.++++ |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788888865 89999999999999999999999999999995 68999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeee-ecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALL-AVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~-P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++|+.++++.+++++ ++.+.|..|. |.+ .-+.-..-.+++++..+-..+..
T Consensus 309 ~eEvie~m~dLrelG--VDivtIGQYL~Ps~-~h~~V~~yv~P~~F~~~~~~a~~ 360 (398)
T PTZ00413 309 EEEVRQTLRDLRTAG--VSAVTLGQYLQPTK-TRLKVSRYAHPKEFEMWEEEAMK 360 (398)
T ss_pred HHHHHHHHHHHHHcC--CcEEeeccccCCCc-ccCCceeccCHHHHHHHHHHHHH
Confidence 999999999999997 8999996554 543 22333344677877766665554
No 31
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.91 E-value=8.4e-23 Score=191.43 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=155.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
+.+ +++|+.+|.||.+.... + +.. .+++++.+.++.+.+.|+++++|+|++.+.+. +...+.+.++++.+++.
T Consensus 67 m~i-~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~~ 139 (302)
T TIGR00510 67 MIL-GDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIREK 139 (302)
T ss_pred Eec-CcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHhc
Confidence 445 99999999999986321 1 111 47899999999999999999999987654332 23456789999999864
Q ss_pred --CcE--EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCC
Q 016605 172 --GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGE 245 (386)
Q Consensus 172 --g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glge 245 (386)
++. +++.....+.+.++.|+++|++.+++++|+.+++++.++++++++++++.++.++++ |+.+++++|+|+||
T Consensus 140 ~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGE 219 (302)
T TIGR00510 140 LPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGE 219 (302)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCC
Confidence 333 332221226889999999999999999999988999999999999999999999998 89999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeee-e-cCCCCCCCCCCCCHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALL-A-VKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~-P-~~gT~l~~~~~~s~~e~~~~~a 296 (386)
|++|+.++++++++++ ++.+.+.+|. | .+.+|+.....|+.-+.++.++
T Consensus 220 Teee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a 270 (302)
T TIGR00510 220 TNEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVA 270 (302)
T ss_pred CHHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHH
Confidence 9999999999999997 8899998876 4 2367776655544444444444
No 32
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=4.6e-23 Score=198.87 Aligned_cols=245 Identities=12% Similarity=0.111 Sum_probs=176.1
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
.+++ ++|+.+|.||.|....... ...+.....+++..+++.+....++.++++|| +|+...+..++.+++.++..-
T Consensus 10 YiHi--PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGG-TPs~L~~~~l~~ll~~i~~~~ 86 (353)
T PRK05904 10 YIHI--PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGG-TPNCLNDQLLDILLSTIKPYV 86 (353)
T ss_pred EEEe--CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC-ccccCCHHHHHHHHHHHHHhc
Confidence 3454 7999999999987532111 11222223556665554433234667777654 565544545555555554432
Q ss_pred hcC--cEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-C
Q 016605 170 DMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (386)
Q Consensus 170 ~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 244 (386)
... +.+.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+|+ |
T Consensus 87 ~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 87 DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 112 335667788999999999999999999999999 99999999999999999999999999997 999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCc-ce--eec-----Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKA-MV--RLS-----AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a~~R~~lp~~-~i--~i~-----~g~~~ 315 (386)
||.+++.++++++.+++ ++++.++.+.|.|||++.... .++.++..+++..++.++.+. +. .++ ++...
T Consensus 167 qt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~ 244 (353)
T PRK05904 167 LKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYIS 244 (353)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccc
Confidence 99999999999999996 899999999999999987542 356666677777777666432 22 222 12222
Q ss_pred cC-----hhHHHhhhhcCccccccCCcccc
Q 016605 316 FS-----MPEQALCFLAGANSIFTGEKLLT 340 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~g~~~~t 340 (386)
.+ ....+.+|++||.+.+.+.++..
T Consensus 245 ~hn~~yw~~~~ylg~G~gA~s~~~~~r~~n 274 (353)
T PRK05904 245 KHNLAYWRTKDWAAIGWGAHGFENNIEYFF 274 (353)
T ss_pred cchHhHhCCCCEEEEcCCcCcccCCeEEEe
Confidence 11 13457889999999876655443
No 33
>PLN02428 lipoic acid synthase
Probab=99.91 E-value=2.2e-22 Score=190.57 Aligned_cols=201 Identities=17% Similarity=0.268 Sum_probs=158.2
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++.+ +++|+.+|.||+++... .+++ ..++|+.+.++.+.+.|++.++++++..+.. .+...+++.++++.+++
T Consensus 105 ~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~ 177 (349)
T PLN02428 105 IMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQ 177 (349)
T ss_pred EEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHH
Confidence 3445 99999999999987432 1233 5688999999999999999999988754332 23567889999999986
Q ss_pred cC--cEEEE-ecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhC-CCCCHHHHHHHHHHHHHc--CCeeeEeEEeec
Q 016605 171 MG--MEVCC-TLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIGL 243 (386)
Q Consensus 171 ~g--~~i~~-t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~-~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Gl 243 (386)
.. +.+.+ +++. .+++.++.|+++|++.+++++|+.+++++.|+ ++++++++++.++.+++. |+.+++++|+|+
T Consensus 178 ~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL 257 (349)
T PLN02428 178 LKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL 257 (349)
T ss_pred hCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec
Confidence 53 33333 3333 48999999999999999999998888999999 578999999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
|||++|+.++++++++++ ++.+.|..|......-+.-...++++++..+-..+..
T Consensus 258 GET~Edv~e~l~~Lrelg--vd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 258 GETDEEVVQTMEDLRAAG--VDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred CCCHHHHHHHHHHHHHcC--CCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 999999999999999996 8899997765321122333455778887776666554
No 34
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.90 E-value=6.7e-22 Score=191.99 Aligned_cols=238 Identities=21% Similarity=0.287 Sum_probs=181.3
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+. -+++ |..||++|.||...... ........++.+|+.+.++.+.+.|++.|.++| |||+...++
T Consensus 53 ~gr~~~~l-risv-T~~CNlrC~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl 123 (373)
T PLN02951 53 FGRRHNYL-RISL-TERCNLRCQYCMPEEGV-ELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDI 123 (373)
T ss_pred CCCcccEE-EEEE-cCCcCcCCCCCCCCcCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhH
Confidence 35555543 3677 99999999999765321 111223458999999999999999999998876 467777789
Q ss_pred HHHHHHHhhc-CcE-E-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~-g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++. |+. + .+|||.+..+.++.|+++|+++|++++|+. ++.|+.+.+.+.+++++++|+.+.++|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 9999998875 764 4 468998777889999999999999999999 8999999887889999999999999997 477
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH-hC--------CCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI-VM--------PKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~-~l--------p~~~i 307 (386)
+++++-.|.|.+++.++++++++++ -.+.+..|+|.+++++......+.+++++.+...-- +. |..++
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y 280 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNF 280 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEE
Confidence 7777655889999999999999985 368899999999887655555677777776643210 11 11233
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
++. .|.+++.... ...||.+||.+
T Consensus 281 ~~~~~~g~ig~I~~~-s~~FC~~CnRl 306 (373)
T PLN02951 281 RIDGHCGSVSFITSM-TEHFCAGCNRL 306 (373)
T ss_pred EECCCCeEEEEEcCC-cccccccCCeE
Confidence 343 2445555554 45699999998
No 35
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.90 E-value=5.4e-22 Score=184.68 Aligned_cols=238 Identities=21% Similarity=0.305 Sum_probs=183.1
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+.. +++ |..||++|.||-..... ...++...+++|||...++.+.+.|++.|-++| |||+...++
T Consensus 6 ~gR~~~~LR-iSv-TdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl 76 (322)
T COG2896 6 FGRPVRYLR-ISV-TDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDL 76 (322)
T ss_pred cCCEeceEE-EEE-ecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCH
Confidence 366665433 466 99999999999765412 223333468999999999999999999998876 578899999
Q ss_pred HHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeE
Q 016605 162 LEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 237 (386)
Q Consensus 162 ~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~ 237 (386)
.++++.+++.++. + .+|||.+.+..++.||+||+++|++|+|++ ++.|.+|.+...++++++.|+.|.++|+. |..
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 9999999876654 4 566999999999999999999999999999 99999998777799999999999999996 999
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHhC--------CCccee
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIVM--------PKAMVR 308 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g-T~l~~~~~~s~~e~~~~~a~~R~~l--------p~~~i~ 308 (386)
++++--|-|++++.+++++++..+ + .+.|..|+|... ..+......+..++.+.+...-... |..++.
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~ 233 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFI 233 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEE
Confidence 888855889999999999999996 3 789999999874 2222223567777777665411111 112233
Q ss_pred ecCc-ccccChhHHHhhhhcCcccc
Q 016605 309 LSAG-RVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 309 i~~g-~~~~~~~~~~~~l~~Gan~~ 332 (386)
...+ .+.+..+.... ||++||.+
T Consensus 234 ~~~~~~ig~I~p~~~~-FC~~CnR~ 257 (322)
T COG2896 234 HPDGGEIGFIAPVSNP-FCATCNRL 257 (322)
T ss_pred eCCCcEEEEEcCCCch-hhhhccee
Confidence 3332 45555555344 99999998
No 36
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.90 E-value=1.5e-22 Score=196.74 Aligned_cols=255 Identities=15% Similarity=0.133 Sum_probs=175.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHH-HHHcC---CcEEEEecccCCCCCChhhHHHHHHHHHHHh--
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQK-AKEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIR-- 169 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~-~~~~G---~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-- 169 (386)
-++|+.+|.||.+....... ..... -.+.+.+++.. +...+ ++.|+++|| +|+...+..+..+++.+++.-
T Consensus 7 iPFC~~~C~yC~f~~~~~~~-~~~~~-y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 7 IPFCENKCGYCDFNSYENKS-GPKEE-YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLSVEAFERLFESIYQHASL 83 (360)
T ss_pred eCCCcCcCCCCCCcccCcCc-cCHHH-HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCCHHHHHHHHHHHHHhCCC
Confidence 48999999999987542111 00000 12333333332 22234 567777664 454433444455555554322
Q ss_pred hcCcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-C
Q 016605 170 DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (386)
Q Consensus 170 ~~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 244 (386)
..+.+ +.++++.++++.++.|+++|++++++++|++ +++++.+++.+++++++++++.++++|+. +++++|+|+ |
T Consensus 84 ~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 84 SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 22344 4567788999999999999999999999999 89999999999999999999999999996 899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCCc-cee--ec----Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPKA-MVR--LS----AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~-~i~--i~----~g~~~ 315 (386)
+|.+++.++++++.+++ ++++.++.++|.|||++... ..++.++..+++..+...+... +.+ ++ ++...
T Consensus 164 qt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~~~ 241 (360)
T TIGR00539 164 QTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAGYQV 241 (360)
T ss_pred CCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCCHHH
Confidence 99999999999999996 89999999999999998653 2467777778877776666432 222 11 11110
Q ss_pred -----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 316 -----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 316 -----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
+-...+..+|++||.+.+.+.++.+. .+.++-.+.+.+.+
T Consensus 242 ~hn~~yw~~~~~lg~G~~A~s~~~~~~~~n~--~~~~~Y~~~~~~~~ 286 (360)
T TIGR00539 242 KHNLAYWGAKDYLGCGAGAHGCVANERFFAK--KLIKNYIKDPLQRG 286 (360)
T ss_pred HHHHHhcCCCCEEEEcCCccccCCCeEEEec--CCHHHHHHHHHcCC
Confidence 11233477888888887766544322 34444445554433
No 37
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=3.3e-22 Score=195.53 Aligned_cols=237 Identities=20% Similarity=0.258 Sum_probs=172.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~ 173 (386)
-++|+.+|.||.+.... +........++.++++++.... .+++.|+++|| +|+...+..++.+.+.++... ..++
T Consensus 10 iPfC~~~C~yC~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGG-tps~l~~~~l~~L~~~i~~~~~~~~~ 86 (374)
T PRK05799 10 IPFCKQKCLYCDFPSYS--GKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGG-TPTYLSLEALEILKETIKKLNKKEDL 86 (374)
T ss_pred eCCccCCCCCCCCCccc--CCcchHHHHHHHHHHHHHhhcCCCceeEEEECCC-cccCCCHHHHHHHHHHHHhCCCCCCC
Confidence 48999999999987532 1111111125666666554322 24566766554 566555555556666655432 1234
Q ss_pred E--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CCCHH
Q 016605 174 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEE 248 (386)
Q Consensus 174 ~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-get~e 248 (386)
+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.+++++.+++++.++++|+. +++++|+|+ |||.+
T Consensus 87 eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e 166 (374)
T PRK05799 87 EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLE 166 (374)
T ss_pred EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHH
Confidence 4 4566778999999999999999999999999 89999999999999999999999999997 999999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-ceeec------Ccccc
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVRLS------AGRVR 315 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~~ 315 (386)
++.++++++.+++ ++++.++.+.|.|||++.. ...++.++..+++..+...+.+. +.+.. ++...
T Consensus 167 ~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~~~~~ 244 (374)
T PRK05799 167 DWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKPGKEC 244 (374)
T ss_pred HHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECCCcch
Confidence 9999999999996 8999999999999999753 34567788888888887776542 33322 12111
Q ss_pred cC-----hhHHHhhhhcCccccccCCc
Q 016605 316 FS-----MPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+ ......+|++||.+.+.|.+
T Consensus 245 ~hn~~yw~~~~~~g~G~gA~s~~~~~~ 271 (374)
T PRK05799 245 RHNLVYWDLEEYIGCGAGAHSYVNGKR 271 (374)
T ss_pred hhHHHHhcCCCEEEEcCCccccCCCEE
Confidence 11 12346788888888766643
No 38
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.89 E-value=9.4e-22 Score=188.76 Aligned_cols=237 Identities=18% Similarity=0.234 Sum_probs=178.6
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++.+. .+++ |+.||++|.||..... ....+...++.||+.+.++.+.+.|++.|.++| |||+..+++
T Consensus 9 ~gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl 78 (329)
T PRK13361 9 FGRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGC 78 (329)
T ss_pred CCCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccH
Confidence 46666543 3567 9999999999975421 112233469999999999999999999998876 467777889
Q ss_pred HHHHHHHhhcC-c-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDMG-M-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~g-~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++.+ + .+ .+|||.+..+.++.|+++|++++++++|+. ++.|+++++..++++++++|+.++++|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 99999988764 4 33 578998777899999999999999999999 8999999988899999999999999999 688
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHHHhC--------CCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATARIVM--------PKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~-l~~~~~~s~~e~~~~~a~~R~~l--------p~~~i 307 (386)
+++++-.|+|.+++.++++++++++ + .+.+..|+|..... +.....++.+++.+.+.....+. |..++
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i-~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--L-DIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--C-eEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 8777645899999999999999996 5 35688899987532 22234567888777654321111 11233
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
.+. .+.+++.... ...||.+||.+
T Consensus 236 ~~~~~~~~ig~I~~~-s~~fC~~Cnr~ 261 (329)
T PRK13361 236 TMADSPIHIGFISPH-SHNFCHECNRV 261 (329)
T ss_pred EECCCCeEEEEEcCC-CccccccCCeE
Confidence 343 2345555544 45699999998
No 39
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=8.6e-22 Score=193.50 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=178.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccC-CCC----HHHHHHHHHHHHH--cCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LMT----KDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~s----~eeI~~~~~~~~~--~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
-++|+.+|.||.|............ ... .+.+.++++.... .+++.|+++|| +|+...+..+..+++.++..
T Consensus 17 iPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGG-Tps~l~~~~l~~ll~~i~~~ 95 (400)
T PRK07379 17 IPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGG-TPSLLSVEQLERILTTLDQR 95 (400)
T ss_pred eccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHh
Confidence 4899999999999643211100000 001 2344444443222 24667777665 55544444445555555432
Q ss_pred hhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEee
Q 016605 169 RDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIG 242 (386)
Q Consensus 169 k~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~G 242 (386)
-.. ..+ +.++++.++++.++.|+++|++++++++|++ +++++.+++.++.++..++++.++++|+. +++++|+|
T Consensus 96 ~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G 175 (400)
T PRK07379 96 FGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG 175 (400)
T ss_pred CCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 211 223 4567788999999999999999999999999 99999999999999999999999999998 99999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-ceee--c--
Q 016605 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVRL--S-- 310 (386)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~i--~-- 310 (386)
+ |||.+++.++++++.+++ +++++++.+.|.|||++.. ...++.++..+++..++..|.+. +.+. +
T Consensus 176 lPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 176 LPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISNY 253 (400)
T ss_pred CCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeehe
Confidence 9 999999999999999996 8999999999999999754 34577888888988888777543 3222 2
Q ss_pred --CcccccC-----hhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 311 --AGRVRFS-----MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 311 --~g~~~~~-----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
+|....+ ....+.+|++||.+.+.|.++.+. .+..+-...+++
T Consensus 254 a~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~--~~~~~y~~~~~~ 303 (400)
T PRK07379 254 AKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRP--RTRKEYYQWVEA 303 (400)
T ss_pred ECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEEEcC--CCHHHHHHHHHh
Confidence 2211111 123577888999888766543332 334444455544
No 40
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=6.2e-22 Score=191.39 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=165.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|+.+|.||.+...... .......++.++++++...+ .+++.|+++|| +|+...+..++++++.++.....
T Consensus 7 iPFC~~~C~yC~f~~~~~~--~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGG-TPs~l~~~~l~~ll~~i~~~~~~ 83 (350)
T PRK08446 7 IPFCESKCGYCAFNSYENK--HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGG-TPSTVSAKFYEPIFEIISPYLSK 83 (350)
T ss_pred eCCccCcCCCCCCcCcCCC--cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999998754211 11111234555555554322 25667777655 56555555566777776655222
Q ss_pred CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CCC
Q 016605 172 GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEA 246 (386)
Q Consensus 172 g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-get 246 (386)
+.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+|+ |+|
T Consensus 84 ~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 84 DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 344 4566778999999999999999999999999 99999999999999999999999999996 899999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCCC-ccee--ecC---cccc---
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPK-AMVR--LSA---GRVR--- 315 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~--~~s~~e~~~~~a~~R~~lp~-~~i~--i~~---g~~~--- 315 (386)
.+++.++++++.+++ ++++.++.+.|.|||++.... .++.++ ++..+...+.. .+.+ ++. +...
T Consensus 164 ~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~~~~~~~~~~---~~~~~~~~l~~~Gy~~yeis~fa~~~~~~hn 238 (350)
T PRK08446 164 KKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEKNHKKKDDEN---LAKFFIEQLEELGFKQYEISNFGKNYQCKHN 238 (350)
T ss_pred HHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHhhhcCCCHHH---HHHHHHHHHHHCCCcEEEeehhhCcchhhhH
Confidence 999999999999996 899999999999999986532 233333 44444444433 2222 211 1110
Q ss_pred --cChhHHHhhhhcCccccccCCcc
Q 016605 316 --FSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 316 --~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+-......+|++||.+.+.+.++
T Consensus 239 ~~yw~~~~~lg~G~gA~s~~~~~~~ 263 (350)
T PRK08446 239 LGYWQGKDYLGCGAGAVGFVANKRF 263 (350)
T ss_pred HHHhCCCCEEEEcCCcccccCCeEE
Confidence 00223467888888887666443
No 41
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.89 E-value=1.1e-21 Score=191.39 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=151.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHH----HHHHHHH----HHHcCCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA----VMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee----I~~~~~~----~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
-++|+.+|.||.+....... ..+.++ +.++++. ....+++.|+++|| +|+.-. .+.+.++++.
T Consensus 13 iPFC~~~C~yC~f~~~~~~~-----~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGG-tPs~l~---~~~l~~ll~~ 83 (378)
T PRK05660 13 IPWCVQKCPYCDFNSHALKG-----EVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGG-TPSLFS---AEAIQRLLDG 83 (378)
T ss_pred eCCccCcCCCCCCeecCCCC-----cCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCC-ccccCC---HHHHHHHHHH
Confidence 48999999999987532111 122222 2222222 11145677777665 444433 3555555555
Q ss_pred Hhh-----cCcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEe
Q 016605 168 IRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (386)
Q Consensus 168 ik~-----~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~ 238 (386)
+++ .+.+ +.++++.++.+.++.|+++|+++|++|+|++ +++++.+++.++.++.+++++.++++|+. ++++
T Consensus 84 l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred HHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 553 2334 4566788999999999999999999999999 99999999999999999999999999997 7999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~ 304 (386)
+|+|+ |+|.+++.++++++.+++ ++++.++.+.|.|||++... ..++.++...++..+..++..
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999996 99999999999999998763 235667777888877766644
No 42
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=5.9e-22 Score=192.83 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=173.1
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCC--HHHHHHH-HHHHHH----cCCcEEEEecccCCCCCChhhHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMT--KDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s--~eeI~~~-~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~ 163 (386)
.++| ++|..+|.||.|..... .... .. .+.++++ ++.... ..++.++++|| +|+...+..+..+++
T Consensus 10 YiHI--PFC~~~C~yC~f~~~~~---~~~~-~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGG-TPs~l~~~~l~~ll~ 82 (370)
T PRK06294 10 YIHI--PFCTKKCHYCSFYTIPY---KEES-VSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGG-TPSLVPPALIQDILK 82 (370)
T ss_pred EEEe--CCccCcCCCCcCcccCC---CccC-HHHHHHHHHHHHHHHhhhhccCCceeEEEECCC-ccccCCHHHHHHHHH
Confidence 3454 89999999999875311 1110 10 1222222 221111 23556666554 566554444455555
Q ss_pred HHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 164 YVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 164 ~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
.++......+.+.+++..++++.++.|+++|++++++++|++ +++++.+.+.++.+++.++++.++++|+. +++++|+
T Consensus 83 ~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~ 162 (370)
T PRK06294 83 TLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIY 162 (370)
T ss_pred HHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 443321112335667888999999999999999999999999 99999999999999999999999999996 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCCCc-cee--ec-
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKA-MVR--LS- 310 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~------~~~s~~e~~~~~a~~R~~lp~~-~i~--i~- 310 (386)
|+ |+|.+++.+.++.+.+++ ++++.++.+.|.|||++... ..++.++..+++..+...+.+. +.+ ++
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 240 (370)
T PRK06294 163 GLPTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELAS 240 (370)
T ss_pred CCCCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeee
Confidence 99 999999999999999996 89999999999999987532 2356777778888777666442 222 21
Q ss_pred ---CcccccC-----hhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 311 ---AGRVRFS-----MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 311 ---~g~~~~~-----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
++....+ ......+|++||.+.+.|.++... .+.++-...++
T Consensus 241 fa~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~~n~--~~l~~Y~~~~~ 290 (370)
T PRK06294 241 YAKPQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRSKNL--SRISHYLRALR 290 (370)
T ss_pred eeCCCchhhhhhhhccCCCEEEEcCCcceecCCEEEEcC--CCHHHHHHHHH
Confidence 1111111 123577888999888766543322 33444444443
No 43
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.88 E-value=2.1e-21 Score=192.26 Aligned_cols=200 Identities=16% Similarity=0.249 Sum_probs=159.1
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ ++|||++|.||..+... + +++..++++|+++++.+.+.|++++.|++.....++.+. ...++.++++.+
T Consensus 140 ~~i~i-srGCp~~CsfC~~~~~~--g--~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l 214 (414)
T TIGR01579 140 AFIKV-QDGCNFFCSYCIIPFAR--G--RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQI 214 (414)
T ss_pred EEEEe-ccCcCCCCCCCceeeec--C--CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHH
Confidence 34667 99999999999876432 2 355689999999999999999999998764433333221 113466666666
Q ss_pred hhc-CcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q 016605 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~~ 238 (386)
++. ++. +. +++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.+++ .|+.+.++
T Consensus 215 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 215 LQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred hcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 543 332 22 234457999999999987 88999999999 9999999999999999999999999 89999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIA 296 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a 296 (386)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ .++.....+...
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 99999 999999999999999996 899999999999999998754 456655444443
No 44
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=3.6e-21 Score=188.30 Aligned_cols=250 Identities=17% Similarity=0.132 Sum_probs=175.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~- 171 (386)
-++|+.+|.||.++.....+ ......++.++++++.+... +++.++++| ++|+... .+++.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~---~~~l~~ll~~i~~~~ 81 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALS---AEQLERLLTAIHRNL 81 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCC---HHHHHHHHHHHHHhC
Confidence 36899999999987532111 11112466777777655544 456666654 4554332 35555555555532
Q ss_pred C----cE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec
Q 016605 172 G----ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (386)
Q Consensus 172 g----~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 243 (386)
+ .+ +.++++.++++.++.|+++|++++++++|++ +++++.++++++++++.++++.++++|+. +++++|+|+
T Consensus 82 ~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~Gl 161 (377)
T PRK08599 82 PLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161 (377)
T ss_pred CCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 1 23 4566788999999999999999999999999 99999999999999999999999999997 899999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC-cceeec-----
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK-AMVRLS----- 310 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~-~~i~i~----- 310 (386)
|||.+++.++++++.+++ ++++.++.+.|.|||++.. .+.++.+...+++..+...+.. .+.+..
T Consensus 162 Pgqt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa 239 (377)
T PRK08599 162 PGQTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFA 239 (377)
T ss_pred CCCCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeee
Confidence 999999999999999996 8999999999999999753 2335666767777777666543 233322
Q ss_pred -Ccccc-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 311 -AGRVR-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 311 -~g~~~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
++... +-...+..+|++||.+.+.|.++.+. .+.++-.+.+++
T Consensus 240 ~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~--~~~~~Y~~~~~~ 288 (377)
T PRK08599 240 KPGFESRHNLTYWNNEEYYGFGAGASGYVNGVRYQNI--GPIKHYLKAINE 288 (377)
T ss_pred CCChHHHHHHHHhcCCcEEEEccCcccccCCEEEEcC--CCHHHHHHHHhc
Confidence 11110 01123467888888887666433322 234444444433
No 45
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=2.2e-21 Score=189.69 Aligned_cols=260 Identities=18% Similarity=0.186 Sum_probs=178.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccC--CCCHHHHHHHHHHHHH-c-----CCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQK--LMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~--~~s~eeI~~~~~~~~~-~-----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
-++|+.+|.||.+............ ..=.+.+.++++...+ . .++.++++|| +|+.-.+..+..+++.++.
T Consensus 9 iPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGG-TPs~l~~~~l~~ll~~i~~ 87 (375)
T PRK05628 9 VPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGG-TPSLLGAEGLARVLDAVRD 87 (375)
T ss_pred eCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCC-ccccCCHHHHHHHHHHHHH
Confidence 4799999999998643211100000 0014666666665443 2 2556666554 5554434444555555544
Q ss_pred Hhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 168 IRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 168 ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
.... +.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 88 ~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~ 167 (375)
T PRK05628 88 TFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY 167 (375)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3222 234 3456788999999999999999999999999 99999999999999999999999999998 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-c--eeec-
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-M--VRLS- 310 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~--i~i~- 310 (386)
|+ |||.+++.++++++.+++ ++++.++.+.+.|||++.. .+.++.++..+++..+..++... + +.++
T Consensus 168 GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~ 245 (375)
T PRK05628 168 GTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSN 245 (375)
T ss_pred cCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeecc
Confidence 98 999999999999999996 8999999999999999754 23456667777877777665432 2 2221
Q ss_pred ---Ccccc-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 311 ---AGRVR-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 311 ---~g~~~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
++... .-......+|++||.+.+.|.++... .+.++-...+++ |-.|+
T Consensus 246 fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~n~--~~l~~Y~~~v~~-~~~p~ 301 (375)
T PRK05628 246 WARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRWWNV--KHPAAYAARLAA-GALPV 301 (375)
T ss_pred ccCCCcccccchhhcCCCCEEEEccCcccccCCEEEEcC--CCHHHHHHHHHc-CCCCc
Confidence 11110 00133577888898887766443322 334444444543 44454
No 46
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.88 E-value=2.7e-21 Score=191.84 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|+.+|.||.+....... ........+.++++++...+. .+..++++| |+|+...+..++++++.++.....
T Consensus 46 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 46 IPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred eCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999986532111 011111345666666554432 255666644 466655555566677766654332
Q ss_pred ---CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-
Q 016605 172 ---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (386)
Q Consensus 172 ---g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl- 243 (386)
+.+ +.+++..++++.++.|+++|++++++|+|++ ++.++.+.++++.++..++++.++++|+. +++++|+|+
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP 203 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP 203 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 234 4566778999999999999999999999999 99999999999999999999999999997 789999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-ceeec------Cccc--
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS------AGRV-- 314 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~-- 314 (386)
++|.+++.++++++.+++ ++++.++.+.+.|+|++.....++.++..+++..++..|... +.+.. .+..
T Consensus 204 ~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~far~~~~~~ 281 (430)
T PRK08208 204 GQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMFRRNDAPDK 281 (430)
T ss_pred CCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecceecCCcccC
Confidence 999999999999999996 899999999999999998766667788888888887776443 22221 1111
Q ss_pred ---cc-ChhHHHhhhhcCccccccCC
Q 016605 315 ---RF-SMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 315 ---~~-~~~~~~~~l~~Gan~~~~g~ 336 (386)
.. ....+..+|++||.+.+.+.
T Consensus 282 ~~~~~~~~~~~~lG~G~gA~s~~~~~ 307 (430)
T PRK08208 282 GAPAYSCQTDGMLGLGCGARSYTGNL 307 (430)
T ss_pred CCCccccCCCCEEEecCCeeecCCCC
Confidence 11 12235678888988876654
No 47
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1.8e-21 Score=190.14 Aligned_cols=260 Identities=13% Similarity=0.099 Sum_probs=181.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|..+|.||.|.......... ..-.+.+.++++...+ ..++.|+++|| +|+...+..++.+++.++..-..
T Consensus 11 IPFC~~kC~yC~f~~~~~~~~~~--~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGG-TPs~l~~~~L~~ll~~i~~~f~~ 87 (380)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHAIDQ--ARFAAAFLRELATEAARTGPRTLTSIFFGGG-TPSLMQPETVAALLDAIARLWPV 87 (380)
T ss_pred eCCcCCcCCCCCCcccCcCcCCH--HHHHHHHHHHHHHHHHHcCCCCcCeEEeCCC-ccccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999997542111100 0124555555554332 24667777665 56655454555555555543211
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC
Q 016605 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (386)
Q Consensus 172 ----g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 245 (386)
.+.+.++++.++.+.++.|+++|++++++|+|++ +++++.+++.++.++..++++.+++++..+++++|+|+ |+
T Consensus 88 ~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 88 ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 2335677888999999999999999999999999 99999999999999999999999999888999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCcce---eec----Cc
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKAMV---RLS----AG 312 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~~i---~i~----~g 312 (386)
|.+++.+.++.+.+++ ++++.++.+.+.|||++.. ...++.++..+++..++.++....+ .++ .|
T Consensus 168 t~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~~a~~g 245 (380)
T PRK09057 168 TLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHARPG 245 (380)
T ss_pred CHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHHHcCCC
Confidence 9999999999999996 9999999999999998753 2346778888888888877754321 111 22
Q ss_pred ccc-----cChhHHHhhhhcCcccccc--CCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 313 RVR-----FSMPEQALCFLAGANSIFT--GEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 313 ~~~-----~~~~~~~~~l~~Gan~~~~--g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
... +-....+.+|++||.+.+. |.++....-.+.++-...+++ |-.|+
T Consensus 246 ~~~~hn~~yw~~~~~lG~G~gA~s~~~~~~~~~~~~n~~~~~~Y~~~i~~-~~~p~ 300 (380)
T PRK09057 246 AESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVER-NGHGI 300 (380)
T ss_pred chhhhHHHHhCCCCEEEEcCCccccccCCCceEEEecCCCHHHHHHHHHc-CCCCc
Confidence 111 1123457788888888764 333332223344554455544 33443
No 48
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=6.8e-21 Score=189.48 Aligned_cols=195 Identities=16% Similarity=0.219 Sum_probs=154.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|+++|.+.+.....+|.+..-..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 456677 89999999999876421 2 235579999999999999999999999875433333221112355555555
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ ... .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.+++.++++.++++ |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 432 32 221 23445899999999998 599999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 290 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e 290 (386)
+|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.++
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 99999 999999999999999996 788999999999999997754 344433
No 49
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=7.9e-21 Score=188.79 Aligned_cols=193 Identities=15% Similarity=0.218 Sum_probs=155.2
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|+||..+.. .+ +++..++++|+++++.+.+.|+++|.+++.....++.+.....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~--rG--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFT--RG--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCcccc--cC--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 345677 9999999999987643 22 345589999999999999999999999875443334322223456666666
Q ss_pred hhc--CcEEE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM--GMEVC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~--g~~i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. +..+. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++..++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 532 22332 23445789999999986 799999999999 99999999999999999999999999 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC-CC-CCCH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEI 288 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~-~~-~~s~ 288 (386)
+|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++.. .+ ..+.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 99999 999999999999999996 8899999999999999874 33 3453
No 50
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.87 E-value=9.3e-21 Score=188.32 Aligned_cols=196 Identities=16% Similarity=0.225 Sum_probs=155.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|.+.|.+.+.....+|.+. ..+++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 34677 99999999999876432 2 245579999999999999999999988764333334321 124566677766
Q ss_pred hhcC-cE---E-EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDMG-ME---V-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~g-~~---i-~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+.+ +. + .+.+..++++.++.|+++| +..+.+++|+. +++++.++++++.++.+++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 6543 32 1 1234568999999999995 88999999999 99999999999999999999999998 5678899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 292 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~ 292 (386)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ ..+.++..
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 99999 999999999999999996 889999999999999987654 35554433
No 51
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.6e-20 Score=187.53 Aligned_cols=188 Identities=16% Similarity=0.278 Sum_probs=155.3
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|.||..+... + +.+..++++|+++++.+.+.|++.|.+++.....+|.+. ..+.+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 345677 89999999999876432 2 234579999999999999999999999875544445442 23567777777
Q ss_pred Hhhc-Cc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+++. ++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7653 43 232 24566899999999985 589999999999 99999999999999999999999998 788999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
++|+|+ |||.+|+.++++++++++ ++.+.++.|.|.|||++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~ 355 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEM 355 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhC
Confidence 999999 999999999999999996 88999999999999998754
No 52
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=2e-20 Score=187.42 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=154.3
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh--HHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i 165 (386)
..+.+++ +.|||++|+||..+... + +++..++|+|+++++.+.+.|+++|.+.+.....+|.+.. ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999876432 2 3345799999999999999999999988765444443211 12355666
Q ss_pred HHHhhcCcE---EE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 166 KDIRDMGME---VC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 166 ~~ik~~g~~---i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
+.+.+.++. +. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 666654443 22 235568999999999999 67999999999 99999999999999999999999998 67788
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCc
Confidence 9999999 999999999999999996 889999999999999987543
No 53
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.87 E-value=1.2e-20 Score=189.84 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=148.5
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
.+.. ++|||++|.||+.+... +...++..++|.|+++++.+.+. |++.|.+..+ ... ...+++.++++.+
T Consensus 199 ~i~t-sRGCp~~C~FC~~~~~~--~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd-~f~----~~~~~~~~l~~~l 270 (472)
T TIGR03471 199 SLYT-GRGCPSKCTFCLWPQTV--GGHRYRTRSAESVIEEVKYALENFPEVREFFFDDD-TFT----DDKPRAEEIARKL 270 (472)
T ss_pred EEEe-cCCCCCCCCCCCCCccC--CCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCC-CCC----CCHHHHHHHHHHH
Confidence 3455 89999999999875322 12345668999999999988874 7788877643 221 2345666777777
Q ss_pred hhcCcEEEE-ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC
Q 016605 169 RDMGMEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (386)
Q Consensus 169 k~~g~~i~~-t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 245 (386)
++.++...+ ....++++.++.|+++|+.++.+|+|+. +++++.++++++.++..++++.++++|+.+.+++|+|+ ||
T Consensus 271 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 271 GPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 766665322 2234799999999999999999999999 99999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~ 281 (386)
|.+++.++++++.+++ ++.+.++.+.|.|||++.
T Consensus 351 t~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~ 384 (472)
T TIGR03471 351 TRETIRKTIDFAKELN--PHTIQVSLAAPYPGTELY 384 (472)
T ss_pred CHHHHHHHHHHHHhcC--CCceeeeecccCCCcHHH
Confidence 9999999999999996 789999999999999874
No 54
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.87 E-value=9.2e-21 Score=169.72 Aligned_cols=186 Identities=29% Similarity=0.453 Sum_probs=144.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCChhhHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-----~~~v~l~~g~~~~~ge~~~~~~l~~~i 165 (386)
.+.+ |++|+++|.||+..... + . ....+++++.+.++.+.+.| ...+.++||. ++...+..+..+++.+
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~-~~~~~~~~~~~~~~~~ 77 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGT-PTLLSPEQLEELLEAI 77 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCC-CCCCCHHHHHHHHHHH
Confidence 3556 99999999999987542 1 1 34578999999999986654 3556666653 3222111234444444
Q ss_pred HHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeEeE
Q 016605 166 KDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGG 239 (386)
Q Consensus 166 ~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G-i~v~~~~ 239 (386)
+..... +.. +.++.+.++++.++.|+++|++.+.+++++. ++.++.++++.++++++++++.++++| +.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 443322 223 3344466899999999999999999999999 899999999999999999999999999 8999999
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 240 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
++|+ +++.+++.++++++++++ ++.+.+..|+|.|||++...+
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 9999 699999999999999996 889999999999999987544
No 55
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.87 E-value=1.5e-20 Score=180.99 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=176.9
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++.+. -+++ |.+||++|.||...... ........++.+++.+.++.+.+.|++.|.++| |||+..+++
T Consensus 12 ~~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 82 (331)
T PRK00164 12 FGRKFTYL-RISV-TDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKDL 82 (331)
T ss_pred CCCccCeE-EEEE-cCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccCH
Confidence 46666643 3566 99999999999865321 112334569999999999999899999998876 356566778
Q ss_pred HHHHHHHhhc-C-cEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~-g-~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++. + ..+ .+|||.+..+.++.|+++|++.+++++|+. ++.|+.+++..++++++++++.+.++|+ .+.
T Consensus 83 ~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 83 EDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 8888888765 3 343 467898777889999999999999999999 8999999888899999999999999999 788
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHH-h-------CCCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARI-V-------MPKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l~~~~~~s~~e~~~~~a~~R~-~-------lp~~~i 307 (386)
+++++..|.+.+++.++++++++++ + .+.+..|+|.+.. .+......+.+++.+.+..... . -|..++
T Consensus 163 i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (331)
T PRK00164 163 VNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQYF 239 (331)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCEEE
Confidence 8777645889999999999999996 3 5788889998754 3333345677777766543311 0 123334
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
.+. .+.+.+.... ...||.+||.+
T Consensus 240 ~~~~~~~~ig~i~~~-s~~fC~~c~r~ 265 (331)
T PRK00164 240 RHPDYGGEIGLIAPV-THDFCASCNRL 265 (331)
T ss_pred EECCCCeEEEEEeCC-CCcccccCCeE
Confidence 442 3444555443 35689999988
No 56
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.87 E-value=9.4e-21 Score=188.42 Aligned_cols=198 Identities=15% Similarity=0.252 Sum_probs=157.1
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh-HHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|++.|.+++.....+|.+.. ...+.++++.+
T Consensus 141 ~~i~~-srGC~~~CsfC~~~~~~--g--~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLKI-QEGCDKFCTYCIVPYAR--G--RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEEH-HhCcCCCCCcCceeccc--C--CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 44566 89999999999876432 2 3455899999999999999999999988743332332211 13466677776
Q ss_pred hhc-CcE-EEE---ecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEe
Q 016605 169 RDM-GME-VCC---TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~~---t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~ 238 (386)
++. ++. +.. ++..++++.++.|+++| +.++.+++|+. +++++.++++++.+++.++++.++++| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 654 332 222 34457899999999995 99999999999 999999999999999999999999998 889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 294 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~ 294 (386)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+...+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r 351 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVKKER 351 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHHHHH
Confidence 99999 999999999999999996 899999999999999998664 3455443333
No 57
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.5e-20 Score=187.27 Aligned_cols=255 Identities=19% Similarity=0.217 Sum_probs=180.4
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChhhHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 164 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~~~~~l~~~ 164 (386)
.|+| ++|+.+|.||.|.... ........-.+.++++++...+ ..++.|+++|| +|+...+..+..+++.
T Consensus 65 YiHI--PFC~~~C~yC~f~~~~--~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGG-TPs~L~~~~l~~ll~~ 139 (449)
T PRK09058 65 YIHI--PFCRTHCTFCGFFQNA--WNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGG-TPTALSAEDLARLITA 139 (449)
T ss_pred EEEe--CCcCCcCCCCCCcCcC--CchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCC-ccccCCHHHHHHHHHH
Confidence 3454 7999999999986431 1111111245666666665443 23556666554 5665545455555555
Q ss_pred HHHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeEe
Q 016605 165 VKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSG 238 (386)
Q Consensus 165 i~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G-i~v~~~ 238 (386)
++..... ..+ +..++..++++.++.|+++|++++++|+|++ +++++.+++.++.++++++++.++++| ..++++
T Consensus 140 i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~D 219 (449)
T PRK09058 140 LREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCD 219 (449)
T ss_pred HHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 5543322 234 4566778999999999999999999999999 999999999999999999999999999 569999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCC-CHHHHHHHHHHHHHhCCCc-ceee
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPV-EIWEMIRMIATARIVMPKA-MVRL 309 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~-s~~e~~~~~a~~R~~lp~~-~i~i 309 (386)
+|+|+ |||.+++.+.++++.+++ ++++.++.+.+.|||++.. .+.+ +.++..+++..++..|.+. +.++
T Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~y 297 (449)
T PRK09058 220 LIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQL 297 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999 999999999999999996 8999999999999998753 2344 7888889998888777543 3332
Q ss_pred c------Cccc-c-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 310 S------AGRV-R-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 310 ~------~g~~-~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
. +++. + .-.....++|++||.+.+.|.++... .+.++-.+.+.
T Consensus 298 eis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~--~~l~~Y~~~i~ 352 (449)
T PRK09058 298 SNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSYMNH--RDLDTYHEAIA 352 (449)
T ss_pred eeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCEEEECC--CCHHHHHHHHH
Confidence 2 2221 1 11233467788888887666443322 23444444443
No 58
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=3.8e-20 Score=186.26 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=151.5
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.+ .....+.++++.
T Consensus 158 ~a~v~i-srGCp~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~ 232 (502)
T PRK14326 158 AAWVSI-SVGCNNTCTFCIVPSLR--G--KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRA 232 (502)
T ss_pred eEEEEE-ccCCCCCCccCceeccC--C--CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHH
Confidence 356777 99999999999876432 2 23457999999999999999999999877543333322 122345555555
Q ss_pred Hhhc-CcE-E---EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-GME-V---CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g~~-i---~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+.+. ++. + +.++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.+++. |+.+.+
T Consensus 233 l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~ 312 (502)
T PRK14326 233 CGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITT 312 (502)
T ss_pred HHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 5432 332 2 2234457999999999997 89999999999 99999999999999999999999996 788999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+
T Consensus 313 ~~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 313 DIIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 999999 999999999999999996 788899999999999988654
No 59
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.3e-20 Score=184.20 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=169.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCC--cccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGV--KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~--~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
-++|..+|.||.|........ ..| .+.+.++++...+ ..++.|+++|| +|+...+..++.+++.++...
T Consensus 18 iPFC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG-TPs~l~~~~l~~ll~~i~~~~ 92 (390)
T PRK06582 18 WPFCLSKCPYCDFNSHVASTIDHNQW----LKSYEKEIEYFKDIIQNKYIKSIFFGGG-TPSLMNPVIVEGIINKISNLA 92 (390)
T ss_pred eCCCcCcCCCCCCeeccCCCCCHHHH----HHHHHHHHHHHHHHccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHhC
Confidence 489999999999975421110 111 2223333332222 24667777665 565555555566666665432
Q ss_pred hc----CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-
Q 016605 170 DM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (386)
Q Consensus 170 ~~----g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl- 243 (386)
.. .+.+.+++..++++.++.|+++|++++++|+|++ +++++.+.+.|+.++.+++++.+++++..+++++|+|+
T Consensus 93 ~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlP 172 (390)
T PRK06582 93 IIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARS 172 (390)
T ss_pred CCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCC
Confidence 21 2335677888999999999999999999999999 99999999999999999999999999778999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-cee--ec----
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVR--LS---- 310 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~--i~---- 310 (386)
|+|.+++.++++.+.+++ |+++.++.+.+.|||++.. ...++.++..+++..+...+... +.+ ++
T Consensus 173 gqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeeceeeeC
Confidence 999999999999999996 8999999999999999853 34567888888888887776542 222 21
Q ss_pred CcccccC-----hhHHHhhhhcCccccccC
Q 016605 311 AGRVRFS-----MPEQALCFLAGANSIFTG 335 (386)
Q Consensus 311 ~g~~~~~-----~~~~~~~l~~Gan~~~~g 335 (386)
+|....+ ......++++||.+.+.+
T Consensus 251 ~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~ 280 (390)
T PRK06582 251 IGQECLHNLTYWNYNSYLGIGPGAHSRIIE 280 (390)
T ss_pred CChhhhhHHHHhcCCcEEEECCCeeecccC
Confidence 2211111 123467888888887654
No 60
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.86 E-value=5.1e-20 Score=182.21 Aligned_cols=195 Identities=15% Similarity=0.283 Sum_probs=151.2
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--hhHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVK 166 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~~~~~l~~~i~ 166 (386)
...+.+ ++|||++|+||..+.. .+ +++..++|+|+++++.+.+.|++++.+++.....+|.+ ..+..+++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~--~G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHA--RG--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccC--CC--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 456777 9999999999987642 22 34557999999999999999999999987543333322 13445555444
Q ss_pred HHhhc-CcEEE-EecC---CCCHHHHHHHHHhc-cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 167 DIRDM-GMEVC-CTLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 167 ~ik~~-g~~i~-~t~g---~l~~e~l~~Lk~aG-~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
.++.. .+.+. .++. .++++.++.++..+ +..+.+++|+. +++++.++++++.++..++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 44321 22222 1222 24677777777554 68899999999 99999999999999999999999998 899999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 290 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e 290 (386)
++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+..+.+.
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 999999 999999999999999996 889999999999999998766555543
No 61
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=3.9e-20 Score=182.77 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=155.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh----hHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 164 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~----~~~~l~~~ 164 (386)
.+.+.+ +.|||++|.||..+... +.. +..++|+|+++++.+.+.|+++|.|++.....+|.+. ....+.++
T Consensus 128 ~a~i~i-srGC~~~CsFC~ip~~r--G~~--~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVNI-SIGCDKKCTYCIVPHTR--GKE--ISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEEe-cCCCCCCCCcCCccccc--CCC--CCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 467788 99999999999877432 222 2369999999999999999999999875433333221 01235666
Q ss_pred HHHHhhc-CcE-EE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCe
Q 016605 165 VKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 234 (386)
Q Consensus 165 i~~ik~~-g~~-i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~ 234 (386)
++.+.+. |+. +. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++.+++++.++++ |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6665542 332 21 23345789999999998 689999999999 99999999999999999999999998 788
Q ss_pred eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 235 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
+.+++|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~ 341 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVASE 341 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHHHH
Confidence 999999999 999999999999999996 788889999999999987654 455544333
No 62
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=4e-20 Score=184.54 Aligned_cols=199 Identities=15% Similarity=0.205 Sum_probs=155.0
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh--hhHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK--TNFNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~--~~~~~l~~~i~ 166 (386)
..+.+ +.|||++|.||..+... +.. +..++++|+++++.+.+.|++.|.|.+.....+ +.. .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~--G~~--~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTR--GEE--VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCccc--CCc--ccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 34566 89999999999876432 222 247999999999999999999998876443222 210 01124566666
Q ss_pred HHhhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 167 DIRDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 167 ~ik~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
.+.+. ++ ... .++..++++.++.|+++| +.++.+++|+. +++++.++++++.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 65543 33 222 234557999999999985 89999999999 99999999999999999999999998 78899
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 295 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~ 295 (386)
+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ .++.+...+..
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~ 362 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERL 362 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHH
Confidence 9999999 999999999999999996 889999999999999998765 45555444443
No 63
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.86 E-value=5.5e-20 Score=177.18 Aligned_cols=239 Identities=21% Similarity=0.283 Sum_probs=176.0
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+. .+++ |+.||++|.||...............++.+++.+.++.+.+.|++.|.++| |||+..+++
T Consensus 5 ~gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l 76 (334)
T TIGR02666 5 FGRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDL 76 (334)
T ss_pred CCCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCH
Confidence 46666643 3566 999999999998763110112234469999999999999999999998876 456666778
Q ss_pred HHHHHHHhh-cCc-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCe-e
Q 016605 162 LEYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-V 235 (386)
Q Consensus 162 ~~~i~~ik~-~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~-v 235 (386)
.++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|++++|+. ++.|+.+.+ +.++++++++|+.++++|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 888888876 467 54 467999888899999999999999999999 899999985 56999999999999999997 8
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC-CCCCCCCHHHHHHHHHHHH-HhCC---------C
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-QDQKPVEIWEMIRMIATAR-IVMP---------K 304 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l-~~~~~~s~~e~~~~~a~~R-~~lp---------~ 304 (386)
.+++++..|.|.+++.++++++++++ + .+.+..|+|.++... ......+.+++++.++..- .+.+ .
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~ 233 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPA 233 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCc
Confidence 88887766899999999999999996 4 478888999876532 2233456777666554321 1111 0
Q ss_pred ccee--ecC--cccccChhHHHhhhhcCcccc
Q 016605 305 AMVR--LSA--GRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 305 ~~i~--i~~--g~~~~~~~~~~~~l~~Gan~~ 332 (386)
..+. +.. +.+.+.... ...||.+||.+
T Consensus 234 ~~~~~~~~~~~~~ig~i~~~-s~~fC~~cnr~ 264 (334)
T TIGR02666 234 PAYRWRLPGGKGRIGFISPV-SDPFCGTCNRL 264 (334)
T ss_pred eeeeeecCCCCeEEEEEccC-CcccccccCEE
Confidence 1222 222 334444333 35689999987
No 64
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=4.5e-20 Score=183.65 Aligned_cols=199 Identities=17% Similarity=0.240 Sum_probs=153.2
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-ChhhHHHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVK 166 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g-e~~~~~~l~~~i~ 166 (386)
....+++ +++||++|.||..+... + +.+..++++|+++++.+.+.|++.|.|++.....+| ++.....+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~--g--~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTR--G--PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhc--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 89999999999886432 2 123479999999999999999999988764322222 2112223445555
Q ss_pred HHhhcCc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeE
Q 016605 167 DIRDMGM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCS 237 (386)
Q Consensus 167 ~ik~~g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~--v~~ 237 (386)
.+++.++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.++++|.. +++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 5544443 222 23445899999999995 599999999999 99999999999999999999999999754 788
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC-CCCCHHHHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KPVEIWEMIR 293 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~-~~~s~~e~~~ 293 (386)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++... ...+.++..+
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~ 348 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVKTE 348 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHHHH
Confidence 999999 999999999999999996 89999999999999998653 3455544433
No 65
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=6.7e-20 Score=182.90 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=154.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh---hHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT---NFNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~---~~~~l~~~i~ 166 (386)
..+.+ +.|||++|.||..+... +. .+..++++|+++++.+.+.|+++|.|.+.....++... ....+.++++
T Consensus 154 ~~i~I-~rGC~~~CsfC~~p~~r--G~--~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIPI-MNGCNNFCSYCIVPYVR--GR--EISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEEh-hcCCCCCCCCCCcccCC--CC--CccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 45667 89999999999876432 22 23479999999999999999999988775433222110 1123555555
Q ss_pred HHh----h-cCcE-E---EEecCCCCHHHHHHHHH--hccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--C
Q 016605 167 DIR----D-MGME-V---CCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 232 (386)
Q Consensus 167 ~ik----~-~g~~-i---~~t~g~l~~e~l~~Lk~--aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--G 232 (386)
.+. . .++. + ..++..++++.++.|++ +|+..+.+++|+. +++++.++++++.+++.++++.++++ |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 552 1 2332 2 23456689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 016605 233 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 294 (386)
Q Consensus 233 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~ 294 (386)
+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ .++.+...+.
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R 370 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVKIAR 370 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHHHHH
Confidence 99999999999 999999999999999996 899999999999999998754 3555444333
No 66
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=5.4e-20 Score=182.89 Aligned_cols=193 Identities=14% Similarity=0.199 Sum_probs=153.9
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|+||..+.. .+ +++..++|+|+++++.+.+.|+++|.|.+.....++.. ...+.++++.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~--rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l 227 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYT--RG--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQML 227 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCcccc--cC--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHH
Confidence 345677 9999999999987632 22 23557999999999999999999999987554444421 23466666665
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ ... .++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.++++ |+.+.++
T Consensus 228 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td 307 (449)
T PRK14332 228 LDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTD 307 (449)
T ss_pred hcCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 32 222 233457899999999998 89999999999 99999999999999999999999998 6788899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC-CCC-CCCHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQK-PVEIWE 290 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~-~~~-~~s~~e 290 (386)
+|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+.. ..+ .++.++
T Consensus 308 ~IvGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 308 IIVGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 99999 999999999999999996 899999999999999986 332 344443
No 67
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.86 E-value=4.5e-20 Score=183.66 Aligned_cols=195 Identities=17% Similarity=0.239 Sum_probs=154.4
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh--hHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYV 165 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~--~~~~l~~~i 165 (386)
...+.+ ++||+++|+||..+... + +.+..++++|+++++.+.+.|++++.+++.....+ |.+. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~--G--~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTR--G--DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeec--C--CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 355677 89999999999876432 2 23457999999999999999999998876433333 2211 112455666
Q ss_pred HHHhh-cCcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCee
Q 016605 166 KDIRD-MGME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (386)
Q Consensus 166 ~~ik~-~g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v 235 (386)
+.+.+ .++. +. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 66653 2432 22 235568999999999999 99999999999 99999999999999999999999987 7889
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCC-CCHHH
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP-VEIWE 290 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~-~s~~e 290 (386)
.+++|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++...+. .+.+.
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 99999999 999999999999999996 8899999999999999987643 34443
No 68
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=5.6e-20 Score=181.57 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=155.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.+++.....+|.+. ..+.+.++++.
T Consensus 125 ~a~i~i-~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 125 SANVTI-MQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred EEEEEe-ccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHH
Confidence 455677 89999999999876432 2 335589999999999999999999999876543344321 12346666666
Q ss_pred Hhhc-C---cEE-EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g---~~i-~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+++. + +.+ ..++..++++.++.|+++ ++..+.+++|+. +++++.++++++.++..++++.++++ |+.+.+
T Consensus 200 l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~ 279 (418)
T PRK14336 200 LHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQT 279 (418)
T ss_pred HHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 6542 2 222 223445789999999985 599999999999 99999999999999999999999999 999999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC-C-CCCCHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-Q-KPVEIWE 290 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~-~-~~~s~~e 290 (386)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++.. . ..++.+.
T Consensus 280 d~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~~ 333 (418)
T PRK14336 280 DLIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVIE 333 (418)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHHH
Confidence 999999 999999999999999996 8899999999999999873 3 3344433
No 69
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=7.5e-20 Score=183.01 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=148.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--h----hHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 163 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~----~~~~l~~ 163 (386)
..+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.|.+.....++-. . ....+.+
T Consensus 170 a~i~i-srGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVSI-MRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEEe-ccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 45677 89999999999876432 2 34557999999999999999999998876432222211 0 1124666
Q ss_pred HHHHHhhc--CcEE--E-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CC
Q 016605 164 YVKDIRDM--GMEV--C-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 233 (386)
Q Consensus 164 ~i~~ik~~--g~~i--~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi 233 (386)
+++.+.+. +..+ . .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++..++++.++++ ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 66665532 2232 2 23455899999999987 899999999999 99999999999999999999999997 67
Q ss_pred eeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 234 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 234 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++..
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~ 372 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAAR 372 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhh
Confidence 7899999999 999999999999999996 8899999999999999874
No 70
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.85 E-value=5.8e-20 Score=182.78 Aligned_cols=186 Identities=15% Similarity=0.254 Sum_probs=147.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|++.|.+.+.....+|.+. ....+.++++.+
T Consensus 142 ~~v~i-~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVTI-IYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEEc-ccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 45677 89999999999876432 2 234579999999999999999999988765433333111 112344455444
Q ss_pred hhc-CcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++. +. ..+..++++.++.|+++| +.++.+++|+. +++++.++++++.++..++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 322 332 21 223457899999999988 78999999999 99999999999999999999999997 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++..
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 99999 999999999999999996 8999999999999999876
No 71
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.85 E-value=8.6e-20 Score=182.61 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=150.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.+....... .......++.++++++.+.. .+++.|+++|| +|+.. ..+++.++++.+++
T Consensus 56 iPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGG-tP~~l---~~~~l~~ll~~i~~ 130 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGG-TPTYL---SPEQISRLMKLIRE 130 (455)
T ss_pred eCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCC-CcCCC---CHHHHHHHHHHHHH
Confidence 48999999999987542111 11111135666666665432 25677777665 44432 34556666665553
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 171 ~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
. +.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 131 ~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (455)
T TIGR00538 131 NFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY 210 (455)
T ss_pred hCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe
Confidence 1 333 4566777999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CC----CCCCCCCHHHHHHHHHHHHHhCC
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PL----QDQKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l----~~~~~~s~~e~~~~~a~~R~~lp 303 (386)
|+ |+|.+++.++++++.+++ ++++.++.+.+.|++ +. .....++.++..+++..+...+.
T Consensus 211 GlPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 211 GLPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred eCCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999996 899999999766643 22 22334678888888877765554
No 72
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.85 E-value=1.1e-19 Score=171.97 Aligned_cols=218 Identities=21% Similarity=0.276 Sum_probs=159.6
Q ss_pred HHhhcCCCeeEEEEeeeecCCCCCc--------CCCCCCCCCCCCCCCc--ccCCCCH-HHHHHHHHHHHHcCCcEEEEe
Q 016605 77 HRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFCMG 145 (386)
Q Consensus 77 ~r~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~s~-eeI~~~~~~~~~~G~~~v~l~ 145 (386)
.|++ ||.+|+-.. ++. .-.||+ .|.||+..... .... ..+..+. ++|.+..+.....+...++|+
T Consensus 9 ~~~~-~g~~v~k~~-~~~-g~~cpnrdg~~~~~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ 84 (302)
T TIGR01212 9 LKER-YGQKVFKIT-LHG-GFSCPNRDGTKGRGGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQ 84 (302)
T ss_pred HHHH-cCCceEEee-cCC-CCCCCCCCCCCCCCCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccCEEEEEEE
Confidence 4555 488888543 454 678998 59999876432 1110 0112343 444444444433333335666
Q ss_pred cccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEecCCCCHHHHHHHH---Hhcc-CeeecccCch-HHHHhhhCCCC
Q 016605 146 AAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIITTR 216 (386)
Q Consensus 146 ~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t~g~l~~e~l~~Lk---~aG~-~~v~i~le~~-~~~~~~i~~~~ 216 (386)
|| +++... .+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+++|++ +++++.+++++
T Consensus 85 gg-t~t~l~---~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~ 160 (302)
T TIGR01212 85 AY-TNTYAP---VEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGH 160 (302)
T ss_pred CC-CcCCCC---HHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcC
Confidence 55 566553 45666666666543 23345567778888777766 4599 5799999999 99999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHH
Q 016605 217 SYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIW 289 (386)
Q Consensus 217 s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~ 289 (386)
++++.+++++.++++|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++.+.|.|||++.. ..+++.+
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~ 238 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLE 238 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHH
Confidence 999999999999999999999999999 999999999999999996 8999999999999999864 3667888
Q ss_pred HHHHHHHHHHHhCCC
Q 016605 290 EMIRMIATARIVMPK 304 (386)
Q Consensus 290 e~~~~~a~~R~~lp~ 304 (386)
+++..+..+...+|.
T Consensus 239 e~~~~~~~~l~~l~~ 253 (302)
T TIGR01212 239 EYISLACDFLEHLPP 253 (302)
T ss_pred HHHHHHHHHHHhCCc
Confidence 888887766666654
No 73
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.85 E-value=8.9e-20 Score=157.47 Aligned_cols=231 Identities=18% Similarity=0.327 Sum_probs=183.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD- 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~- 170 (386)
++++.+.|.++|.||+..-. .++-. .+.+++++...++.+.|...+.++||-.+. | ...+..+.+.++++|+
T Consensus 14 ISVTG~yC~lnC~HCg~~~L--~~Mi~---vt~~~l~k~~~el~kkGy~g~llSGGm~sr-g-~VPl~kf~d~lK~lke~ 86 (275)
T COG1856 14 ISVTGAYCSLNCPHCGRHYL--EHMIK---VTTKSLLKRCMELEKKGYEGCLLSGGMDSR-G-KVPLWKFKDELKALKER 86 (275)
T ss_pred EEEeccceEecChHHHHHHH--HHhcc---cchHHHHHHHHHHHhcCceeEEEeCCcCCC-C-CccHHHHHHHHHHHHHh
Confidence 34447899999999975321 11111 344788888888999999999888875443 3 3567889999999995
Q ss_pred cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHH
Q 016605 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (386)
Q Consensus 171 ~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e 248 (386)
.|+.+..+.|..+++.++.||++++|.+++.+=+-+++.+.+.+ .++.++.++.++.+.+.|+.+..++++|+ .-..+
T Consensus 87 ~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~ 166 (275)
T COG1856 87 TGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIH 166 (275)
T ss_pred hCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCccc
Confidence 58888888999999999999999999999876554555555544 67899999999999999999999999999 44444
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc--ccChhHHHhhhh
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV--RFSMPEQALCFL 326 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~--~~~~~~~~~~l~ 326 (386)
.-.+.++.+.... ++.+.+..|+|.|||.|++.++++.+|..+.+..||..+|+ -+.+.+.+. ...-..+..+..
T Consensus 167 ~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~ 243 (275)
T COG1856 167 GEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL 243 (275)
T ss_pred chHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence 4456678888774 89999999999999999999999999999999999999999 455554432 233355677888
Q ss_pred cCcccc
Q 016605 327 AGANSI 332 (386)
Q Consensus 327 ~Gan~~ 332 (386)
+|+|.+
T Consensus 244 ~gVd~I 249 (275)
T COG1856 244 AGVDRI 249 (275)
T ss_pred cCCcee
Confidence 999998
No 74
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.85 E-value=3.9e-20 Score=186.79 Aligned_cols=178 Identities=14% Similarity=0.174 Sum_probs=146.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++. |+|||++|.||+.+... .+++..+++.|+++++.+.+ .|++.|.+... .++ ...+++.++++++.+
T Consensus 197 i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd-~f~----~~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 197 PNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADE-EPT----INRKKFQEFCEEIIA 266 (497)
T ss_pred eec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEec-ccc----cCHHHHHHHHHHHHh
Confidence 455 99999999999876421 34666899999999998864 78888877653 222 234567777777764
Q ss_pred cC---cEE--EEecCC--CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 171 MG---MEV--CCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 171 ~g---~~i--~~t~g~--l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+ +.. .+.... .+++.++.|+++|+.++.+|+|+. +++++.++++++.++..++++.++++||.+.+++|+|
T Consensus 267 ~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 267 RNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred cCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 43 332 222222 378999999999999999999999 9999999999999999999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC
Q 016605 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (386)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~ 281 (386)
+ |||.+++.++++++.+++ ++++.++.+.|.|||++.
T Consensus 347 ~P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~ 384 (497)
T TIGR02026 347 FENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLF 384 (497)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHH
Confidence 9 999999999999999996 889999999999999874
No 75
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.85 E-value=4.5e-20 Score=181.10 Aligned_cols=236 Identities=13% Similarity=0.121 Sum_probs=166.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCC-cccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.|........ ......=.+.+.++++.... ..++.|+++|| +|+...+..+..+++.++..-.
T Consensus 26 IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGG-TPs~L~~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 26 FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGG-TPSLLSAAGLDRLLSDVRALLP 104 (394)
T ss_pred eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCC-CcCCCCHHHHHHHHHHHHHhCC
Confidence 489999999999875421111 00000123555555554322 23567777665 5555444444555555544332
Q ss_pred c--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-C
Q 016605 171 M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 244 (386)
Q Consensus 171 ~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g 244 (386)
. ..+ +.++++.++.+.++.|+++|++++++++|++ +++++.+++.++.++..++++.+++.+..+++++|+|+ |
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 184 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG 184 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC
Confidence 2 123 5667888999999999999999999999999 99999999999999999999999998878999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCCCc-ceeec------Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPKA-MVRLS------AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~--~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~~ 315 (386)
+|.+++...++.+.+++ ++++.++.|.|.|||++.... .++.++..++...+...|... +.+.. ++..+
T Consensus 185 qt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~~~~~ 262 (394)
T PRK08898 185 QTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSAYAKPGRQC 262 (394)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhccccccCCCccc
Confidence 99999999999999996 899999999999999987532 356677777777777666432 22221 11111
Q ss_pred cC-----hhHHHhhhhcCcccccc
Q 016605 316 FS-----MPEQALCFLAGANSIFT 334 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~ 334 (386)
.. ......+|++||.+.+.
T Consensus 263 ~hn~~~w~~~~~lg~G~gA~s~l~ 286 (394)
T PRK08898 263 RHNLNYWQFGDYLGIGAGAHGKLS 286 (394)
T ss_pred hhHHHHhCCCCEEEECCCeeeeec
Confidence 11 11235678888877654
No 76
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.85 E-value=7.2e-20 Score=182.25 Aligned_cols=196 Identities=14% Similarity=0.232 Sum_probs=152.9
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh-HHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +.+..++++|+++++.+.+.|++.+.+.+.....+|.+.. ...+.++++.+
T Consensus 149 ~~i~i-~rGC~~~CsfC~~p~~~--g--~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 149 AFVTI-MYGCNNFCTYCIVPYVR--G--RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred EEEEH-HhCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 45677 89999999999886432 2 2344799999999999999999999988754433332110 02344555555
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ .+. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ ++.+.++
T Consensus 224 ~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 224 NEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred HhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 22 222 235558999999999986 89999999999 99999999999999999999999998 7778999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 292 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~ 292 (386)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 99999 999999999999999996 889999999999999988653 34444333
No 77
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.85 E-value=1.3e-19 Score=180.20 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=154.3
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-----------hhH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----------TNF 158 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-----------~~~ 158 (386)
..+.+ +.|||++|.||..+... + +++..++|+|+++++.+.+.|+++|.+.+.+...+|.+ ...
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~--G--~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMR--G--DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCccccc--C--CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 44667 99999999999876432 2 24558999999999999999999998875432222211 114
Q ss_pred HHHHHHHHHHhhcCcE--EE-EecCCCCHHHHHHHHHhccC--eeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 016605 159 NQILEYVKDIRDMGME--VC-CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~--i~-~t~g~l~~e~l~~Lk~aG~~--~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~- 231 (386)
+++.++++.+.+.++. +. +.+...+++.++.|++ |.. .+.+++|+. +++++.++++.++++.+++++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 5788888888766653 21 2233367899999998 654 678899999 99999999988999999999999996
Q ss_pred -CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 016605 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 295 (386)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~ 295 (386)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||+....+ .++.++..+..
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 788899999998 999999999999999996 889999999999999975432 45665544443
No 78
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.85 E-value=1.9e-19 Score=179.78 Aligned_cols=206 Identities=14% Similarity=0.157 Sum_probs=148.8
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEY 164 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~ 164 (386)
..|++ ++|+.+|.||.+............ .-.+.++++++.... .++..++++|| +|+...+ +++.++
T Consensus 53 LYvHI--PfC~~~C~yC~~~~~~~~~~~~~~-~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGG-TPs~l~~---~~l~~l 125 (453)
T PRK13347 53 LYLHV--PFCRSLCWFCGCNTIITQRDAPVE-AYVAALIREIRLVAASLPQRRRVSQLHWGGG-TPTILNP---DQFERL 125 (453)
T ss_pred EEEEe--CCccccCCCCCCcCcCccccchHH-HHHHHHHHHHHHHHHhcCCCCeEEEEEEcCc-ccccCCH---HHHHHH
Confidence 33454 789999999998753211100000 013455555544332 24556666654 4443333 555555
Q ss_pred HHHHhhc-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-e
Q 016605 165 VKDIRDM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-V 235 (386)
Q Consensus 165 i~~ik~~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v 235 (386)
++.+++. +.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.+++.++++.++++|+. +
T Consensus 126 l~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v 205 (453)
T PRK13347 126 MAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESI 205 (453)
T ss_pred HHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 5555431 234 4566778999999999999999999999999 99999999999999999999999999997 9
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC-----CCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-----LQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~-----l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++++|+|+ |+|.+++.++++++.+++ ++++.++.|...|+.. ......++.++..+++..+...|..
T Consensus 206 ~~dli~GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 278 (453)
T PRK13347 206 NFDLIYGLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLA 278 (453)
T ss_pred EEeEEEeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999996 8999999987555322 1233456778878888777666543
No 79
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.85 E-value=1.5e-19 Score=171.72 Aligned_cols=237 Identities=20% Similarity=0.256 Sum_probs=172.7
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++... .+++ |++||++|.||...... ......++.|++.+.++.+...|++.|.++| |||+..+++
T Consensus 5 ~gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 73 (302)
T TIGR02668 5 FGRPVTSL-RISV-TDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDL 73 (302)
T ss_pred CCCccCeE-EEEE-cccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCH
Confidence 46666543 4566 99999999999875321 1223459999999999988889999998876 456667778
Q ss_pred HHHHHHHhhcCc-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeE
Q 016605 162 LEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 237 (386)
Q Consensus 162 ~~~i~~ik~~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~ 237 (386)
.++++.+++.++ .+ .+|||.+..+.+..|+++|+++|++++|+. ++.|+.+.+..++++++++++.+.++|+. +.+
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 889998887777 44 567898778899999999999999999999 89999998888999999999999999996 888
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHhCCC------cceeec
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIVMPK------AMVRLS 310 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g-T~l~~~~~~s~~e~~~~~a~~R~~lp~------~~i~i~ 310 (386)
.+++-.|++.+++.++++++++++ + .+.+..++|... .........+..++...+...-..... ..+.+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFIP 230 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEeC
Confidence 877755899999999999999996 4 478888888763 222222234555555544322111110 111122
Q ss_pred C-cccccChhHHHhhhhcCcccc
Q 016605 311 A-GRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 311 ~-g~~~~~~~~~~~~l~~Gan~~ 332 (386)
. +.+++........|+.+||.+
T Consensus 231 ~~~~~g~i~~~~~~~fC~~c~r~ 253 (302)
T TIGR02668 231 GGVEVEVVKPMDNPVFCAHCTRL 253 (302)
T ss_pred CCeEEEEECccCCCCccccCCeE
Confidence 2 344444443221588999988
No 80
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.84 E-value=2.6e-19 Score=178.43 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=154.3
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh--hHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVK 166 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~--~~~~l~~~i~ 166 (386)
...+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.|++.....+|.+. ....+.++++
T Consensus 149 ~a~v~i-~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 149 SAFVNI-MQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred EEEEEe-ccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 456777 89999999999876321 2 234579999999999999999999999774433233211 0124555555
Q ss_pred HHhhc-Cc---EE-EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 167 DIRDM-GM---EV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 167 ~ik~~-g~---~i-~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
.+.+. ++ .+ ..++..++++.++.|++. |+.++.+++|+. +++++.++++++.+++.++++.+++. |+.+.
T Consensus 224 ~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~ 303 (446)
T PRK14337 224 KVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALT 303 (446)
T ss_pred HHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 55442 33 22 223455789999999984 689999999999 99999999999999999999999998 68899
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
+++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||+....+ .++.+...+
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~ 360 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVKSA 360 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHHHH
Confidence 9999999 999999999999999996 889999999999999987764 355544333
No 81
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.84 E-value=3.5e-19 Score=178.00 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=147.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.+....... .......++.+.++++...+ .++..++++|| +|+... .+++.++++.+++
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGG-tPs~l~---~~~l~~ll~~l~~ 130 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGG-TPTFLS---PEQLRRLMALLRE 130 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCc-ccccCC---HHHHHHHHHHHHH
Confidence 47999999999987532111 11110124555555554333 24666777664 454433 3555555555543
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeEeEEe
Q 016605 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGII 241 (386)
Q Consensus 171 ~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~~~~i~ 241 (386)
. +.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.++.+++++.++++|+ .+++++|+
T Consensus 131 ~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (453)
T PRK09249 131 HFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIY 210 (453)
T ss_pred hCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2 334 4566777999999999999999999999999 9999999999999999999999999999 69999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC-----CCCCCCCHHHHHHHHHHHHHhCC
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l-----~~~~~~s~~e~~~~~a~~R~~lp 303 (386)
|+ |+|.+++.++++++.+++ ++++.++.+.+.|+... .....++.++..+++..+...+.
T Consensus 211 GlPgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 276 (453)
T PRK09249 211 GLPKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLT 276 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999996 89999999986554311 12234677888888877666553
No 82
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.84 E-value=1.8e-19 Score=179.82 Aligned_cols=198 Identities=16% Similarity=0.247 Sum_probs=153.7
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------h--hhHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQ 160 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge------~--~~~~~ 160 (386)
...+.+ +.|||++|.||.++... +. .+..++++|+++++.+.+.|++.+.+++.....+|. | .....
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~r--G~--~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVR--GK--EQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceeccc--CC--CcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 345677 89999999999876432 22 234789999999999999999999887632222211 1 01235
Q ss_pred HHHHHHHHhhc-CcE-EE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 016605 161 ILEYVKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (386)
Q Consensus 161 l~~~i~~ik~~-g~~-i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~- 231 (386)
+.++++.+.+. ++. +. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.+++.++++.++++
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 66666666543 332 32 23455789999999986 589999999999 99999999999999999999999999
Q ss_pred -CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
|+.+.+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+...+
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~ 366 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVKSD 366 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHHHH
Confidence 778999999999 999999999999999996 899999999999999987643 345544333
No 83
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.8e-19 Score=171.62 Aligned_cols=189 Identities=14% Similarity=0.290 Sum_probs=153.0
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh--HHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i 165 (386)
..+.+.| ..||+.+|+||..+.. .+.. +..++++|+++++.+.+.|+++|.+.|-....+|.+.. ...+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG~~--rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RGKE--RSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CCCc--cCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 4456778 8999999999987643 3333 34699999999999999999999998766666665533 24566666
Q ss_pred HHHhhc-CcE-E---EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCee
Q 016605 166 KDIRDM-GME-V---CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (386)
Q Consensus 166 ~~ik~~-g~~-i---~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v 235 (386)
+.+-+. |+. + ..++-.++++.++.+++. =+..+.+.+|+. +++++.++++++.++.++.++.++++ ++.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 666543 333 2 233455889999999874 266778899999 99999999999999999999999876 6779
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
.+++|+|+ |||++|+.++++++++.+ ++.+.++.|.|.||||-...
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccC
Confidence 99999999 999999999999999996 89999999999999997643
No 84
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.82 E-value=2.6e-18 Score=168.36 Aligned_cols=176 Identities=16% Similarity=0.309 Sum_probs=145.7
Q ss_pred EEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 87 QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 87 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
.+...+++ |+.||++|.||+..... . .....++.+++.+.++++.+.|+..|.++| |||+.++++.++++
T Consensus 15 P~~l~i~i-T~~CNl~C~~C~~~~~~-~--~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~ 84 (378)
T PRK05301 15 PLWLLAEL-TYRCPLQCPYCSNPLDL-A--RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVA 84 (378)
T ss_pred CeEEEEEe-cCccCcCCCCCCCcccc-c--cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHH
Confidence 34455777 99999999999865321 1 123458999999999999999988888876 46777788999999
Q ss_pred HHhhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 167 DIRDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 167 ~ik~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+++.++.+ .+|||. ++++.++.|+++|++.|.+++|+. ++.++.+++.. ++++++++++.+++.|+.+.+.+++
T Consensus 85 ~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv- 163 (378)
T PRK05301 85 HARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI- 163 (378)
T ss_pred HHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-
Confidence 999878763 567886 789999999999999999999999 89999998764 8999999999999999998877765
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
...+.+++.++++++.+++ ++.+.+..+.+.
T Consensus 164 ~~~N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 164 HRHNIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred ecCCHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 4789999999999999997 778877665554
No 85
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.81 E-value=1.5e-18 Score=170.48 Aligned_cols=233 Identities=18% Similarity=0.237 Sum_probs=173.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-----CCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|...|.||.|+........... .=.+-+.++++..... .++.|+++| |+|+...+..++.+++.|+..-.
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRGQPVD-EYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLKALRELFN 118 (416)
T ss_pred cccccccCCCCCCeeeccCCCChHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHHHHHHhcc
Confidence 5899999999999865322110000 0022333333333322 245566655 46777777777888888876652
Q ss_pred -c--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec
Q 016605 171 -M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (386)
Q Consensus 171 -~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 243 (386)
. ..+ +.++++.++.+.++.|+++|++++++|+|++ +++++.+.+.|+.++..++++.+++.|+. +++++|||+
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl 198 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL 198 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 2 244 5678899999999999999999999999999 99999999999999999999999999997 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC-----CCCCHHHHHHHHHHHHHhCCCc-c--eeec----
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-----KPVEIWEMIRMIATARIVMPKA-M--VRLS---- 310 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~-----~~~s~~e~~~~~a~~R~~lp~~-~--i~i~---- 310 (386)
++|.+++.+.++.+.+++ |++++++.|+-.|+|++... ..|+.++...+...+...+-+. + +.++
T Consensus 199 P~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~ 276 (416)
T COG0635 199 PGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEISNFAK 276 (416)
T ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeechhcC
Confidence 999999999999999996 99999999999999987542 2467777777777776655432 2 2222
Q ss_pred ---------CcccccChhHHHhhhhcCccccccCC
Q 016605 311 ---------AGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 311 ---------~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+|.. . ..+++++||.+.+.+.
T Consensus 277 ~~~e~~hNl~yw~~---~-~~lGiG~gA~g~~~~~ 307 (416)
T COG0635 277 PGGECRHNLQYWET---K-DYLGIGAGAHGRIGGT 307 (416)
T ss_pred cchHHHhhhccccC---C-CeEEECCCceeeeccE
Confidence 12222 2 5778888888876663
No 86
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.81 E-value=1.8e-17 Score=165.95 Aligned_cols=206 Identities=17% Similarity=0.288 Sum_probs=162.6
Q ss_pred CCCCC-cCCCCCCCCCC------CCCCC-------cccCCCCHHHHHHHHHHHHHcC--CcEE--EEecccCCCCCChhh
Q 016605 96 TGGCS-EDCSYCPQSSR------YDTGV-------KGQKLMTKDAVMQAAQKAKEAG--STRF--CMGAAWRDTIGRKTN 157 (386)
Q Consensus 96 t~~C~-~~C~fC~~~~~------~~~~~-------~~~~~~s~eeI~~~~~~~~~~G--~~~v--~l~~g~~~~~ge~~~ 157 (386)
...|| .+|.||+..-. +..+. .+++.-+..++...++++...| ++.| .+. ||+.+.-....
T Consensus 75 p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~-GGTft~l~~~y 153 (522)
T TIGR01211 75 PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIM-GGTFPARDLDY 153 (522)
T ss_pred CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEE-CCCcccCCHHH
Confidence 45799 58999975211 11111 1234468899999999999876 3334 444 44566554455
Q ss_pred HHHHHHHHHHHh-h-------------------------cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHh
Q 016605 158 FNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS 210 (386)
Q Consensus 158 ~~~l~~~i~~ik-~-------------------------~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~ 210 (386)
.+++++.+.... . .++.+.+.+..++++.++.|+++|+++|.+|+|++ +++++
T Consensus 154 ~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~ 233 (522)
T TIGR01211 154 QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILE 233 (522)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 566666554432 1 12334566788999999999999999999999999 99999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhc---CCCCCCeEeeeeeeecCCCCCCC----
Q 016605 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAVKGTPLQD---- 282 (386)
Q Consensus 211 ~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~~~~f~P~~gT~l~~---- 282 (386)
.++++++.+++.++++.++++|+.+++++|+|+ |+|.++..++++.+.+ ++ ++.+.++++.+.+||++..
T Consensus 234 ~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~~gT~L~~~~~~ 311 (522)
T TIGR01211 234 RTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVTRGTELYELWKR 311 (522)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceeeCCCHHHHHHHc
Confidence 999999999999999999999999999999999 9999999999999874 74 9999999999999999853
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCC
Q 016605 283 --QKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 283 --~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
..+++.++++++++.+...+|.
T Consensus 312 G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 312 GEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCc
Confidence 5678999999999999888885
No 87
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.81 E-value=7.3e-18 Score=160.78 Aligned_cols=218 Identities=17% Similarity=0.215 Sum_probs=162.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCeeE-EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEE
Q 016605 65 PVLDLLFHGAQVHRHAHNFREVQ-QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143 (386)
Q Consensus 65 ~~~~~l~~aa~~~r~~~~g~~v~-~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~ 143 (386)
|....+..++.+.+++..+.+-+ +...+++ |..||++|.||+..... .. .....++.|++.+.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~-~~-~~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYP-AE-ILKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCC-Cc-ccccCCCHHHHHHHHH---HcCCCEEE
Confidence 44455666777778777665443 4555777 99999999999865322 11 1123489999887655 46887777
Q ss_pred EecccCCCCCChhhHHHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHH
Q 016605 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDER 221 (386)
Q Consensus 144 l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~ 221 (386)
+.| |||+.++++.++++.+++.++. ..+|||.+..+.+..++++|...+.+++|+.++.++.++. ..+++.+
T Consensus 78 i~G------GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~ 151 (318)
T TIGR03470 78 IPG------GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRA 151 (318)
T ss_pred EeC------ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHH
Confidence 765 5787888899999999877766 3568998777789999999999999999999777877643 5689999
Q ss_pred HHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHH
Q 016605 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 297 (386)
Q Consensus 222 l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~ 297 (386)
+++|+.++++|+.+.+.+++-.+++.+++.++++++.++| ++.+.+.+..|....+-.+ ..++.++..+++..
T Consensus 152 l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~ 224 (318)
T TIGR03470 152 VEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFRE 224 (318)
T ss_pred HHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHH
Confidence 9999999999999888776634789999999999999997 7788887766654333221 23455665555443
No 88
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.80 E-value=3.2e-18 Score=169.34 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=170.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-C
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G--~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g 172 (386)
-++|+.+|.||.|..... ...... .-.+.+.++++.+.+.| +..++++|| +|+.. + +++.++++.+++. .
T Consensus 59 IPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGG-TPs~l-~---~~L~~ll~~i~~~f~ 131 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGG-TTTIL-E---DELAKTLELAKKLFS 131 (433)
T ss_pred eCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCC-ccccC-H---HHHHHHHHHHHHhCC
Confidence 489999999999975321 111110 12567777777666544 455666554 55543 3 4444445545432 2
Q ss_pred ---cEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHH---HHHHHHHHHcCCeeeEeEEeec-C
Q 016605 173 ---MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGIIGL-G 244 (386)
Q Consensus 173 ---~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~---l~~i~~a~~~Gi~v~~~~i~Gl-g 244 (386)
+.+.+++..++++.++.|+++ ++++++|+|++ +++++.+++.++.... ++.++.+++.+..+++++|+|+ |
T Consensus 132 i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPg 210 (433)
T PRK08629 132 IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPG 210 (433)
T ss_pred CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCC
Confidence 335577888999999999999 99999999999 9999999998876444 5555555544446899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC---CCCCCHHHHHHHHHHHHHhCCCcceeecCc------c--
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD---QKPVEIWEMIRMIATARIVMPKAMVRLSAG------R-- 313 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~---~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g------~-- 313 (386)
||.+++.+.++++.+++ ++++.++++.+.|+|.... ...++.++..++...+..++. .+.+++.. .
T Consensus 211 qT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~~~~~~ 287 (433)
T PRK08629 211 QTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSKKNDEG 287 (433)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCCCCchh
Confidence 99999999999999996 9999999999999997432 234566666778888887776 45454321 0
Q ss_pred -ccc-ChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 314 -VRF-SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 314 -~~~-~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
..+ ....++.+|++||.+.+.|.++... .+.++-.+.+++ |--|+
T Consensus 288 ~~~y~~~~~~ylGlG~gA~s~~~~~~~~N~--~~l~~Y~~~i~~-g~~pv 334 (433)
T PRK08629 288 FDEYVIDYDEYLGVGSGSFSFLDGTLYVNT--FSLRDYQERIAA-GQMGV 334 (433)
T ss_pred hceeeccCCeEEEEcCCeeEecCCeEEEcC--CCHHHHHHHHHc-CCCCe
Confidence 111 1234577888999887766543322 234444444443 43443
No 89
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.80 E-value=7.2e-18 Score=164.08 Aligned_cols=175 Identities=17% Similarity=0.292 Sum_probs=143.4
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
+...+++ |+.||++|.||+..... . .....++.+++.+.++++.+.|+..|.++| |||+.++++.++++.
T Consensus 7 ~~l~iei-T~~CNl~C~~C~~~~~~--~-~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~ 76 (358)
T TIGR02109 7 LWLLAEL-THRCPLQCPYCSNPLEL--A-RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAH 76 (358)
T ss_pred cEEEEee-ccccCcCCCCCCCChhc--c-cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHH
Confidence 3345677 99999999999865321 1 123358999999999999999998888876 467677788999999
Q ss_pred HhhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 168 IRDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 168 ik~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
+++.++.+ .+|||. ++++.++.|+++|++.|.+++|+. ++.++++++. .+++.++++++.++++|+.+.+.+++ .
T Consensus 77 ~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~ 155 (358)
T TIGR02109 77 ARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-H 155 (358)
T ss_pred HHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-c
Confidence 99888763 567886 789999999999999999999999 8999998764 48999999999999999988776665 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+|.+++.++++++.+++ ++.+.+....+.
T Consensus 156 ~~N~~~l~~~~~~~~~lg--~~~i~~~~~~~~ 185 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELG--ADRVELATTQYY 185 (358)
T ss_pred cCCHHHHHHHHHHHHHcC--CCEEEEEeeecc
Confidence 789999999999999997 777777655443
No 90
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.80 E-value=6.2e-18 Score=149.50 Aligned_cols=190 Identities=29% Similarity=0.502 Sum_probs=143.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--Cc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~ 173 (386)
|++|+++|.||+........ .......+++.+.+......+...+.++|| +|.....+.++++.+++. ++
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~~ 75 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPGF 75 (204)
T ss_pred CCccCCcCCCCCCCCCCCCC--ccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCCc
Confidence 89999999999987543111 111112146666666666677777777553 343444788888888865 55
Q ss_pred EE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHH
Q 016605 174 EV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (386)
Q Consensus 174 ~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~-~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e 248 (386)
.+ ..|++. ++++.++.|+++|++.+.+++|+. +..+..++ +..++++++++++.+++.|+.+.+.+++|. +++.+
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhH
Confidence 54 334554 489999999999999999999999 88888887 677999999999999999999999999999 55568
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC-CCCCCCHHHHHHH
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQKPVEIWEMIRM 294 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~-~~~~~s~~e~~~~ 294 (386)
++.++++++.++. .+..+.+..|.|.|||++. ..+..+.....++
T Consensus 156 ~~~~~~~~l~~~~-~~~~~~~~~~~p~~~t~~~~~~~~~~~~~~~~~ 201 (204)
T cd01335 156 DDLEELELLAEFR-SPDRVSLFRLLPEEGTPLELAAPVVPAEKLLRL 201 (204)
T ss_pred HHHHHHHHHHhhc-CcchhhhhhhcccCCCeeeeccccccHHHHHHH
Confidence 9999999998874 2788999999999999987 2233344444433
No 91
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.79 E-value=9.3e-18 Score=149.69 Aligned_cols=196 Identities=22% Similarity=0.346 Sum_probs=159.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~---- 171 (386)
+..|..+|.||.... +.+ ..++++|-.+.++..+..|.+.++|++..++.+. +..-..+.+.|++||+.
T Consensus 77 G~~CTR~C~FC~V~~----g~P--~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~t 149 (306)
T COG0320 77 GDICTRRCRFCDVKT----GRP--NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQT 149 (306)
T ss_pred cchhccCCCccccCC----CCC--CCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCCc
Confidence 789999999998863 222 2378999999999999999999999988766542 33456788888888865
Q ss_pred CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHH
Q 016605 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEED 249 (386)
Q Consensus 172 g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed 249 (386)
.+++.+..-.-.+..++.+.++|.|.+++++|+.+++|..++++.+|++.++.++.+++.+ +.+.+++|+|+|||.+|
T Consensus 150 ~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~E 229 (306)
T COG0320 150 TIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEE 229 (306)
T ss_pred eEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHH
Confidence 3455554333479999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+.++.+++.+ ++.+.+..|.--...-+.-....+++++..+-.++..
T Consensus 230 v~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~ 278 (306)
T COG0320 230 VIEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEE 278 (306)
T ss_pred HHHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHHH
Confidence 999999999996 8899998876422222333345788887777666654
No 92
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.76 E-value=1.6e-16 Score=145.52 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=142.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCChhhHHH-HHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G---~~~v~l~~g~~~~~ge~~~~~~-l~~~i~~ik~~ 171 (386)
|.+||++|.||...... .......++++++++.+..+.... ...|.++| |||+...+ +.++++.+++.
T Consensus 22 ~~gCnl~C~~C~~~~~~--~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~~~ 93 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTW--DLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACKEL 93 (235)
T ss_pred ECCCCCcCCCCCChhhc--cCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHHHC
Confidence 78999999999865321 112224589999999888766532 24577765 45655544 56899999888
Q ss_pred CcEE-EEecCCCC--HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CC
Q 016605 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GE 245 (386)
Q Consensus 172 g~~i-~~t~g~l~--~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--ge 245 (386)
|+.+ ..|||.+. .+.+.++.+ .++.+.+++++. ++.|+++++. ++++++++++.+++.|+.+.+.+++.. .+
T Consensus 94 g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~ 171 (235)
T TIGR02493 94 GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTD 171 (235)
T ss_pred CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCC
Confidence 8763 56888643 566666665 478899999999 8999988755 899999999999999998766655544 56
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecC---------CCCCCCCCCCCHHHHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVK---------GTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~---------gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
+.+++.++++++.+++. +..+.+.+|.|.. ..++.+.++++.+++.+..++++
T Consensus 172 n~~ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 172 SEEDIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred CHHHHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 88999999999999972 5677888887753 33455667788888877777665
No 93
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.75 E-value=2.4e-17 Score=141.37 Aligned_cols=156 Identities=25% Similarity=0.444 Sum_probs=118.8
Q ss_pred eecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 93 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~-~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
++ |++||++|.||...... .......++++++++.++.+ ...|...+.++| |+|...+.+.+.+..+.+.
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 2 ET-TRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp EE-ESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHC
T ss_pred EE-CcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHh
Confidence 45 89999999999887531 12233458999999999999 578855555554 3455555666666665533
Q ss_pred ---CcEE-EEecCCC-CHHHHHHHHHhccCeeecccCch-HH-HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-
Q 016605 172 ---GMEV-CCTLGML-EKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (386)
Q Consensus 172 ---g~~i-~~t~g~l-~~e~l~~Lk~aG~~~v~i~le~~-~~-~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl- 243 (386)
++.+ ..++|.. +++.++.|+++|++.+.+++++. ++ +++.+++++++++++++++.++++|+.....+++|+
T Consensus 73 ~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 73 KKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLP 152 (166)
T ss_dssp TCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBT
T ss_pred hccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 5564 3456654 59999999999999999999999 87 888888888999999999999999998555555556
Q ss_pred CCCHHHHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTL 257 (386)
Q Consensus 244 get~ed~~~~l~~l 257 (386)
|+|++|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999885
No 94
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.75 E-value=2.2e-16 Score=156.26 Aligned_cols=205 Identities=16% Similarity=0.249 Sum_probs=154.9
Q ss_pred eeecCCCCCcCCCCCCCCCC-CCCCC--cccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhh-HHHHHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTN-FNQILEYV 165 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~-~~~l~~~i 165 (386)
+.+ |++||++|.||..... .+... .....++++|+++.++.+... +++.|.|.|. |||+. .+.+++.+
T Consensus 28 ~~v-t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~-----GEPLl~~e~~~~~l 101 (442)
T TIGR01290 28 LAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGP-----GDPLANIGKTFQTL 101 (442)
T ss_pred Eec-CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecC-----CCcccCccccHHHH
Confidence 455 9999999999975321 11111 123459999999999887754 4566777652 45544 36678888
Q ss_pred HHHhhc--CcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC----------CC-----CHHHHHHHHH
Q 016605 166 KDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETLK 226 (386)
Q Consensus 166 ~~ik~~--g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~----------~~-----s~~~~l~~i~ 226 (386)
+.+++. ++.+ ..|||.+.++.+++|+++|+|.|.+++++. ++.+++|.+ +. .+++.+++++
T Consensus 102 ~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 102 ELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred HHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 888754 6775 457999889999999999999999999999 899987631 11 1567789999
Q ss_pred HHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC--CCCCC--CCCCCCHHHHHHHHHHHHHhC
Q 016605 227 HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ--DQKPVEIWEMIRMIATARIVM 302 (386)
Q Consensus 227 ~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~--gT~l~--~~~~~s~~e~~~~~a~~R~~l 302 (386)
.+.+.|+.+.+.+++-.|.|++++.++++++++++ +..+.+.+|+|.| |+++. +.+.++.+++.++...++..+
T Consensus 182 ~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~ 259 (442)
T TIGR01290 182 KLTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGT 259 (442)
T ss_pred HHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhh
Confidence 99999998777777655778899999999999997 6778899999888 77753 457788888877776666555
Q ss_pred CC
Q 016605 303 PK 304 (386)
Q Consensus 303 p~ 304 (386)
+.
T Consensus 260 ~~ 261 (442)
T TIGR01290 260 PQ 261 (442)
T ss_pred hh
Confidence 43
No 95
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.75 E-value=2.4e-16 Score=149.82 Aligned_cols=206 Identities=17% Similarity=0.193 Sum_probs=145.7
Q ss_pred cCCCeeEEEEeeeecCCCCCc----CCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCc----EE-EEeccc--
Q 016605 81 HNFREVQQCTLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GST----RF-CMGAAW-- 148 (386)
Q Consensus 81 ~~g~~v~~~~~i~i~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~----~v-~l~~g~-- 148 (386)
+.|.......++.. |.||+. .|.||++.... ++..++++|.+.++.+.+. +.+ .+ .+.+|.
T Consensus 8 ~~~~~~~~~~~i~~-srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIILR-TRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEEe-CCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 33433333344555 999999 59999765321 2235889999988876653 322 11 133321
Q ss_pred CCCCCChhhHHHHHHHHHHHhhcC----cEEEEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHh-hhCCCCCHHHH
Q 016605 149 RDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDER 221 (386)
Q Consensus 149 ~~~~ge~~~~~~l~~~i~~ik~~g----~~i~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~-~i~~~~s~~~~ 221 (386)
.+... ..+.+.++++.+++.+ +.+.+++..++++.++.|+++|++ +|.+|+|++ +++++ .++++++.++.
T Consensus 81 D~~~~---~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 81 DDREV---PKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred CcCcC---CHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 11222 2344555555555433 234566778899999999999998 899999999 99995 79999999999
Q ss_pred HHHHHHHHHcCCeeeEeEEeec-C----CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHH
Q 016605 222 LETLKHVREAGINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWE 290 (386)
Q Consensus 222 l~~i~~a~~~Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e 290 (386)
.++++.++++|+.+.+.+|+|+ + |+.+++.++++++..+ . ++++++++.|.|||+++ ...++..+.
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l--~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws 234 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPV--T-DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWS 234 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhc--C-CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHH
Confidence 9999999999999999999998 5 4557777888999888 3 79999999999999864 234554455
Q ss_pred HHHHHHHHH
Q 016605 291 MIRMIATAR 299 (386)
Q Consensus 291 ~~~~~a~~R 299 (386)
.++++...+
T Consensus 235 ~~e~l~e~~ 243 (313)
T TIGR01210 235 VAEVLKEAK 243 (313)
T ss_pred HHHHHHHHH
Confidence 555444443
No 96
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.73 E-value=5.3e-16 Score=147.68 Aligned_cols=215 Identities=17% Similarity=0.237 Sum_probs=158.0
Q ss_pred hhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCC--CcccCCCCHHHHHHHHHHHHH---c---C------------
Q 016605 79 HAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G------------ 138 (386)
Q Consensus 79 ~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~s~eeI~~~~~~~~~---~---G------------ 138 (386)
..|+|-.-+-+..+.....+|+++|.||........+ .......++++|++.+..... . |
T Consensus 48 ~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea 127 (322)
T PRK13762 48 SKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEA 127 (322)
T ss_pred cccccccchheeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhc
Confidence 3355655444555555344599999999765332111 223446899999998865421 1 2
Q ss_pred --CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC
Q 016605 139 --STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT 214 (386)
Q Consensus 139 --~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~ 214 (386)
.+.+.++++ |||+.++++.++++.+++.|+.+ ..|||.+ ++.++.| +++++.+.+++++. ++.|+++++
T Consensus 128 ~~~~~v~iSl~-----GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~ 200 (322)
T PRK13762 128 MEPKHVAISLS-----GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINR 200 (322)
T ss_pred cCCCEEEEeCC-----ccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhC
Confidence 234556542 67888889999999999888875 5689976 7888988 77999999999999 899999976
Q ss_pred C---CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC--CCCCCCCCHH
Q 016605 215 T---RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIW 289 (386)
Q Consensus 215 ~---~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~--l~~~~~~s~~ 289 (386)
+ .+|+.++++++.+.+.|..+.+.+++-.|.|.++..++++++++++ ++.+.+.+|+|.+... +.....++.+
T Consensus 201 ~~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~e 278 (322)
T PRK13762 201 PVIPDAWERILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHE 278 (322)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHH
Confidence 3 5899999999999999987666655544666666669999999985 8999999999987543 2334567888
Q ss_pred HHHHHHHHHHHhC
Q 016605 290 EMIRMIATARIVM 302 (386)
Q Consensus 290 e~~~~~a~~R~~l 302 (386)
++.++...++...
T Consensus 279 ev~~~~~~l~~~~ 291 (322)
T PRK13762 279 EVREFAKELAEYT 291 (322)
T ss_pred HHHHHHHHHHHhc
Confidence 8888877776654
No 97
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=136.35 Aligned_cols=225 Identities=19% Similarity=0.305 Sum_probs=163.3
Q ss_pred HHHHhhcCCCeeEEEEeeeecCCCCCcC--------CCCCCCCCCCCCCCcccCCCCH-HHHHHHHHHHHH-cC-CcE-E
Q 016605 75 QVHRHAHNFREVQQCTLLSIKTGGCSED--------CSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKE-AG-STR-F 142 (386)
Q Consensus 75 ~~~r~~~~g~~v~~~~~i~i~t~~C~~~--------C~fC~~~~~~~~~~~~~~~~s~-eeI~~~~~~~~~-~G-~~~-v 142 (386)
.-.|++ ||.+|+-.. +.. .-.||++ |.||+...... ....+..+. +++.+.++.+.+ .+ .+- +
T Consensus 13 ~~lr~~-fg~Kv~Kv~-ld~-GF~CPNRDGti~rGGCtFC~~~g~~d--~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyia 87 (312)
T COG1242 13 DYLREK-FGEKVFKVT-LDG-GFSCPNRDGTIGRGGCTFCSVAGSGD--FAGQPKISIAEQFKEQAERMHKKWKRGKYIA 87 (312)
T ss_pred HHHHHH-hCCeeEEEe-ccC-CCCCCCCCCcccCCceeeecCCCCCc--cccCcccCHHHHHHHHHHHHHHhhcCCcEEE
Confidence 344566 498888644 344 6689974 99997654321 111122344 455555554433 22 222 3
Q ss_pred EEecccCCCCCChhhHHHHHHHHHHHh-h---cCcEEEEecCCCCHHHHHHHHHhcc---CeeecccCch-HHHHhhhCC
Q 016605 143 CMGAAWRDTIGRKTNFNQILEYVKDIR-D---MGMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYSKIIT 214 (386)
Q Consensus 143 ~l~~g~~~~~ge~~~~~~l~~~i~~ik-~---~g~~i~~t~g~l~~e~l~~Lk~aG~---~~v~i~le~~-~~~~~~i~~ 214 (386)
+|+.. ++|+.+ .+.+.+..+.+- . .|+.+.+.+..+.++.++.|.+..= -++-+|+||. +++.+.|++
T Consensus 88 YFQ~~-TNTyAp---vevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNR 163 (312)
T COG1242 88 YFQAY-TNTYAP---VEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINR 163 (312)
T ss_pred EEecc-ccccCc---HHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhc
Confidence 45553 566553 345555555443 2 2666667788899999999987642 2456899999 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCC
Q 016605 215 TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVE 287 (386)
Q Consensus 215 ~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s 287 (386)
+|+++...++++.+++.||+|++++|+|+ ||+.++..++++.+..++ ++.|.++++....||+|.. ....+
T Consensus 164 gHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 164 GHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred ccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 99999999999999999999999999999 999999999999999996 8999999999999999853 56789
Q ss_pred HHHHHHHHHHHHHhCCC-cce-eec
Q 016605 288 IWEMIRMIATARIVMPK-AMV-RLS 310 (386)
Q Consensus 288 ~~e~~~~~a~~R~~lp~-~~i-~i~ 310 (386)
.+++..++.-+-..+|. ..| +++
T Consensus 242 ~eeYv~~~~d~le~lpp~vviHRit 266 (312)
T COG1242 242 LEEYVELVCDQLEHLPPEVVIHRIT 266 (312)
T ss_pred HHHHHHHHHHHHHhCCcceEEEEec
Confidence 99999998877666655 444 444
No 98
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.72 E-value=9.5e-16 Score=141.42 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=142.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHH-HHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~-l~~~i~~ik~~ 171 (386)
+.+||++|.||...... .....+.++++|+++.++..... ....|.++| |||+...+ +.++++.+++.
T Consensus 27 ~~gCnl~C~~C~~~~~~--~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~~ 98 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTW--DTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 98 (246)
T ss_pred ECCCCCcCCCCCCHHHC--CCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHHc
Confidence 78999999999865321 11122348999999988765432 234576665 46755544 56999999988
Q ss_pred CcEE-EEecCCCC--HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCC
Q 016605 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (386)
Q Consensus 172 g~~i-~~t~g~l~--~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glge 245 (386)
|+.+ ..|||.+. .+.++.+.+ .+|.+.+++++. ++.|+.+++. +.+..++.++.+.+.|+++.+.+++ |.++
T Consensus 99 g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd 176 (246)
T PRK11145 99 GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTD 176 (246)
T ss_pred CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCC
Confidence 8875 56789863 577787766 479999999999 8889988654 5678899999999999876555444 5567
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHHHh
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT---------~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+++|+.+++++++.++ .+..+.+.+|.|.++. ++.+.++++.+++.+...+++..
T Consensus 177 ~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 177 DDDSAHRLGEFIKDMG-NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred CHHHHHHHHHHHHhcC-CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 7789999999999885 3567888888887643 34456778888877776666543
No 99
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.69 E-value=4.3e-15 Score=135.37 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=149.9
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChhhHHHHHHHHHHHhhc-
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~- 171 (386)
+.+||++|.||+....+... .+......+|.+++..+...+..- -+.++-| .|||..++.+.++++++++.
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~~~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKEHK 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhcCC
Confidence 77999999999876543211 122234788888888877665322 2455654 36888999999999999975
Q ss_pred CcEE--EEecC-CCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 172 GMEV--CCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 172 g~~i--~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
|+++ .-||| .++++.+++|.+||+|++++|++++ ++.-+.+.+. .+.+.+++..+.+..+||.+-+.-++-.|-
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~ 268 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV 268 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc
Confidence 6653 23455 5899999999999999999999999 7777777663 478999999999999999976666654588
Q ss_pred CHHHHHHHHHHHhcCCCC--CCeEeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTH--PESVPINALLAVK-GTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~--~~~v~~~~f~P~~-gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
|++|+..+++|++++|.+ -..++++.|+|+. |-.-....+.+..++.+++...-
T Consensus 269 ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 269 NDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred ChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHH
Confidence 899999999999999752 3457889999987 33222345678888888876553
No 100
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.68 E-value=1.9e-14 Score=137.14 Aligned_cols=208 Identities=18% Similarity=0.285 Sum_probs=155.4
Q ss_pred CCCCCc-CCCCCCCC------CCCCCCC-------cccCCCCHHHHHHHHHHHHHcCCc----EEEEecccCCCCCChhh
Q 016605 96 TGGCSE-DCSYCPQS------SRYDTGV-------KGQKLMTKDAVMQAAQKAKEAGST----RFCMGAAWRDTIGRKTN 157 (386)
Q Consensus 96 t~~C~~-~C~fC~~~------~~~~~~~-------~~~~~~s~eeI~~~~~~~~~~G~~----~v~l~~g~~~~~ge~~~ 157 (386)
..+||+ +|.||... +.+ .+. .+...-+..++...++++...|.+ ++.+.|| +.+.-....
T Consensus 74 p~~CPHg~CvfCpgg~~~~spQSy-tg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGG-TFta~~~~y 151 (515)
T COG1243 74 PHGCPHGRCVFCPGGPDKDSPQSY-TGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGG-TFTALSLEY 151 (515)
T ss_pred CCCCCCCeEEeCCCCCCCCCCccc-CCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecc-cccCCCHHH
Confidence 568997 99999765 212 111 112224667888889999988753 2334444 555433233
Q ss_pred HHHHHHHHHHHhh--------------------cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC
Q 016605 158 FNQILEYVKDIRD--------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR 216 (386)
Q Consensus 158 ~~~l~~~i~~ik~--------------------~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~ 216 (386)
.++++..+..... .|+.+.+.+...+++.+..|++.|+++|-+|+|++ +++++...++|
T Consensus 152 qe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGH 231 (515)
T COG1243 152 QEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGH 231 (515)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCc
Confidence 3454444332211 24556677888999999999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCC-CCCCeEeeeeeeecCCCCCC------CCCCCCH
Q 016605 217 SYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLP-THPESVPINALLAVKGTPLQ------DQKPVEI 288 (386)
Q Consensus 217 s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~-~~~~~v~~~~f~P~~gT~l~------~~~~~s~ 288 (386)
+.+++.++-+.++++|++++.++|.|+ |-+.+--.+.+..+-+.+ ..||.+.+++-..++||++. ...+.+.
T Consensus 232 tvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~ 311 (515)
T COG1243 232 TVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTT 311 (515)
T ss_pred cHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCH
Confidence 999999999999999999999999999 776655455555554442 24899999999999999974 3578899
Q ss_pred HHHHHHHHHHHHhCCCc
Q 016605 289 WEMIRMIATARIVMPKA 305 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~ 305 (386)
++.+++++.+..++|+.
T Consensus 312 EEaVeli~~i~~~~p~w 328 (515)
T COG1243 312 EEAVELIVEIYRLEPKW 328 (515)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999888888874
No 101
>PRK00955 hypothetical protein; Provisional
Probab=99.66 E-value=1.2e-14 Score=146.96 Aligned_cols=228 Identities=13% Similarity=0.207 Sum_probs=152.2
Q ss_pred HhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhh-cCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCC
Q 016605 44 TIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHA-HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLM 122 (386)
Q Consensus 44 ~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~-~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~ 122 (386)
+...+|...||.+|+-.+|..|....-.-... +. ..+---.+...|.+ +.||+..|+||..+... + ..++..
T Consensus 250 ~v~npp~~~l~~~e~d~~y~lpy~r~~hp~y~---~~g~ipa~~~i~~sI~i-~RGC~g~CSFCaIp~~r--G-r~~rSR 322 (620)
T PRK00955 250 VVQNPPAPPLTQEELDEVYDLPYTRTYHPSYE---EKGGIPAIEEVKFSITS-HRGCFGGCSFCAITFHQ--G-RFIQSR 322 (620)
T ss_pred EEECCCCCCCChhhhhhccCCCcccCcchhhc---cCCCCCceeeEEEEEEe-eCCCCCCCCCCCeeccc--C-Ccceec
Confidence 34556777899999999988664322111111 11 00000112234566 89999999999877542 2 122347
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEE-eccc-CCCCCC-------------------------hhhHHHHHHHHHHHhhc-Cc
Q 016605 123 TKDAVMQAAQKAKEA-GSTRFCM-GAAW-RDTIGR-------------------------KTNFNQILEYVKDIRDM-GM 173 (386)
Q Consensus 123 s~eeI~~~~~~~~~~-G~~~v~l-~~g~-~~~~ge-------------------------~~~~~~l~~~i~~ik~~-g~ 173 (386)
+.++|+++++.+.+. |++.+.. +||. .+.+|. ......+.++++++++. |+
T Consensus 323 s~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv 402 (620)
T PRK00955 323 SQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV 402 (620)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCc
Confidence 999999999999876 7777642 2321 112220 01235788888888764 54
Q ss_pred E-EEEecCC--------CCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCCC--CHHHHHHHH-HHHHHcCCe--eeE
Q 016605 174 E-VCCTLGM--------LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITTR--SYDERLETL-KHVREAGIN--VCS 237 (386)
Q Consensus 174 ~-i~~t~g~--------l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~~--s~~~~l~~i-~~a~~~Gi~--v~~ 237 (386)
. +.++.|. .+++.++.|.+..+. .+.+++|+. +++++.++++. .+++.++.+ +.+.++|+. +..
T Consensus 403 krv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~ 482 (620)
T PRK00955 403 KKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVP 482 (620)
T ss_pred eEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEE
Confidence 3 4444441 234578888876443 688999999 99999998763 234444333 445677876 889
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
.+|+|+ |||++|+.++++++++++ .+.+.++.|.|.|||+-
T Consensus 483 yfIvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~A 524 (620)
T PRK00955 483 YLMSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLS 524 (620)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcch
Confidence 999999 999999999999999996 78899999999999863
No 102
>PRK01254 hypothetical protein; Provisional
Probab=99.65 E-value=8.1e-15 Score=147.15 Aligned_cols=225 Identities=16% Similarity=0.217 Sum_probs=157.0
Q ss_pred CCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHH
Q 016605 48 GPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (386)
Q Consensus 48 ~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI 127 (386)
+|...||.+|+-.+|+.|....-.-... +.-.+---.+...|.+ +.||+.+|+||+.... .+. .....+.|+|
T Consensus 335 pP~~plt~~ElD~vy~LPy~R~~HP~Y~---~~~ipA~e~i~~sV~i-~RGC~g~CSFCaI~~h--qGr-~irSRS~esI 407 (707)
T PRK01254 335 PPAIPLSTEEMDSVFALPYARVPHPAYG---KARIPAYDMIRFSVNI-MRGCFGGCSFCSITEH--EGR-IIQSRSEESI 407 (707)
T ss_pred CCcCCCCHHHHHHHhCCCcccccCcccc---cCCCCchhheEEEEEE-ccCCCCCCCccccccc--cCC-eeeeCCHHHH
Confidence 4556678888888877553221111100 0000000012234566 8999999999998754 232 1334799999
Q ss_pred HHHHHHHHHc--CCcEEE--EecccCCCCCC---h----------------------hhHHHHHHHHHHHhhc-CcE-EE
Q 016605 128 MQAAQKAKEA--GSTRFC--MGAAWRDTIGR---K----------------------TNFNQILEYVKDIRDM-GME-VC 176 (386)
Q Consensus 128 ~~~~~~~~~~--G~~~v~--l~~g~~~~~ge---~----------------------~~~~~l~~~i~~ik~~-g~~-i~ 176 (386)
+++++.+.+. |++.+. ++|-..+.+|. + .....+.++++++++. |+. +.
T Consensus 408 L~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVr 487 (707)
T PRK01254 408 INEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKIL 487 (707)
T ss_pred HHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEE
Confidence 9999999863 999887 55544444442 0 1235788888888864 553 44
Q ss_pred EecCC------CCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHc-CC--eeeEeEEeec
Q 016605 177 CTLGM------LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREA-GI--NVCSGGIIGL 243 (386)
Q Consensus 177 ~t~g~------l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~-Gi--~v~~~~i~Gl 243 (386)
+..|. .+++.++.|.+..+. .+.+.+|+. +++++.++++ .++++..+.++.+++. |. .+...+|+|+
T Consensus 488 I~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGh 567 (707)
T PRK01254 488 IASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAH 567 (707)
T ss_pred EEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEEC
Confidence 43331 258899999887765 677899999 9999999886 5789999999888764 64 4667899998
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC---CCCCC
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPLQ 281 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~---gT~l~ 281 (386)
|+|++|+.++++|+++++ .+.-.++.|+|.| +|.|.
T Consensus 568 PGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MY 607 (707)
T PRK01254 568 PGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMY 607 (707)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHH
Confidence 999999999999999996 6677788999999 77664
No 103
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.64 E-value=6.3e-15 Score=148.99 Aligned_cols=193 Identities=22% Similarity=0.325 Sum_probs=141.9
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHH-H
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK-D 167 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~-~ 167 (386)
..+++ ++||+.+|.||+.+... .++.++++.++++++...+.|...+.+..+....++.+ ...+...+.+. .
T Consensus 200 ~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 273 (490)
T COG1032 200 FSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLE 273 (490)
T ss_pred EEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHH
Confidence 45677 99999999999987431 24457888888888887777766644222222222222 12223333332 2
Q ss_pred HhhcCc------EEE---EecCCCC-HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHH-HHHHHHHcCCee
Q 016605 168 IRDMGM------EVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGINV 235 (386)
Q Consensus 168 ik~~g~------~i~---~t~g~l~-~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~-~i~~a~~~Gi~v 235 (386)
+.+.+. .+. .....++ ++.++.++++|..++.+++|+. +++++.++++++.++.++ +++.+.+.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~ 353 (490)
T COG1032 274 LIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRV 353 (490)
T ss_pred HHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCcee
Confidence 222222 221 2234566 8899999999999999999999 999999999999999995 999999999999
Q ss_pred eEeEEeec-CCCHHHHHHH---HHHHhcCCCCC-CeEeeeeeeecCCCCCCCCCCCCHHH
Q 016605 236 CSGGIIGL-GEAEEDRVGL---LHTLATLPTHP-ESVPINALLAVKGTPLQDQKPVEIWE 290 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~-~~v~~~~f~P~~gT~l~~~~~~s~~e 290 (386)
...+|+|+ |||.+|+..+ ++++++++ . ..+.++.|+|.|+|++..........
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~~~ 411 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLENEL 411 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccchh
Confidence 99999999 9999999998 78888886 4 47999999999999998765544433
No 104
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.63 E-value=4.8e-14 Score=125.02 Aligned_cols=156 Identities=17% Similarity=0.258 Sum_probs=116.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i 175 (386)
|++||++|.||..+.. ........++++++.+.+..... .++.|.++| |||+...++.++++.+++.|+.+
T Consensus 23 t~~Cnl~C~~C~~~~~--~~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPEL--IDREGSGEIEVEFLLEFLRSRQG-LIDGVVITG------GEPTLQAGLPDFLRKVRELGFEV 93 (191)
T ss_pred cCCCCCCCCCCCCccc--cCCCCCCcCCHHHHHHHHHHhcC-CCCeEEEEC------CcccCcHhHHHHHHHHHHCCCeE
Confidence 8999999999987632 11222345899999998886532 356777765 45666666889999998888775
Q ss_pred -EEecCCCCHHHHHHHHHhc-cCeeecccCchHHHHhhhCC-CCCHH-HHHHHHHHHHHcCCeeeEeEEeec-CCCHHHH
Q 016605 176 -CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGIIGL-GEAEEDR 250 (386)
Q Consensus 176 -~~t~g~l~~e~l~~Lk~aG-~~~v~i~le~~~~~~~~i~~-~~s~~-~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~ 250 (386)
..|||. +++.++.+.++| ++.+.+++++.++.+..+.+ +.+++ +++++++.+++.|+.+.+.+++-. ....+++
T Consensus 94 ~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei 172 (191)
T TIGR02495 94 KLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDL 172 (191)
T ss_pred EEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHH
Confidence 456886 678899999998 69999999988666666643 45665 899999999999998766665543 2236789
Q ss_pred HHHHHHHhcCC
Q 016605 251 VGLLHTLATLP 261 (386)
Q Consensus 251 ~~~l~~l~~l~ 261 (386)
.++++++++++
T Consensus 173 ~~~~~~l~~~~ 183 (191)
T TIGR02495 173 AEIATRIKENG 183 (191)
T ss_pred HHHHHHhccCC
Confidence 99999998773
No 105
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.63 E-value=3.6e-14 Score=135.50 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=141.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhh--HHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i~ 166 (386)
..+.+ |++||.+|.||...... +......++.+++.+.++.+.+ .++..|.++|| +|+. .+++.++++
T Consensus 90 vll~v-T~~C~~~Cr~C~r~~~~--~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG------DPl~~~~~~L~~ll~ 160 (321)
T TIGR03822 90 VLLKP-VHVCPVYCRFCFRREMV--GPEGLGVLSPAELDAAFAYIADHPEIWEVILTGG------DPLVLSPRRLGDIMA 160 (321)
T ss_pred EEEEe-cCCCCCcCcCCCchhhc--CCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCC------CcccCCHHHHHHHHH
Confidence 34566 99999999999865321 1112234688999998888875 48888888775 3433 357777777
Q ss_pred HHhhcC-c---EEEE-----ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 167 DIRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 167 ~ik~~g-~---~i~~-----t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+++.+ + .+.+ ++..++++.++.|+++|+ .+.+++++. ++. + .++.+++++.++++|+.+.
T Consensus 161 ~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~e---l-----~~~~~~ai~~L~~~Gi~v~ 231 (321)
T TIGR03822 161 RLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHARE---L-----TAEARAACARLIDAGIPMV 231 (321)
T ss_pred HHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhh---c-----CHHHHHHHHHHHHcCCEEE
Confidence 777653 2 2222 233479999999999995 477888886 321 1 4788999999999999876
Q ss_pred EeEEe--ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 237 SGGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 237 ~~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
...++ |.+++.+++.++.+++.+++ +..+.++.+.|.+|+... ..+.++..+++..++..++.
T Consensus 232 ~q~vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 232 SQSVLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISG 296 (321)
T ss_pred EEeeEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 64443 77999999999999999996 788889999999997543 36788888888888877765
No 106
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-13 Score=127.90 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=139.6
Q ss_pred CCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~g~ 173 (386)
+.+||++|.||.++..... .......++++++.+.+. ...+...|+++| ||| ...+.+.++++.+|+.|+
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~Gl 113 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSG------GEPTLQAEFALDLLRAAKERGL 113 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHCCC
Confidence 7899999999998754321 111222344444443322 223567788876 456 677999999999999999
Q ss_pred EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHH
Q 016605 174 EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEED 249 (386)
Q Consensus 174 ~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed 249 (386)
.+ ..|||..+++.+++|.+. +|.+.+++.+. ++.|+.+.... .+.+++.++.+.+.|+.+.+..++ |.+++.++
T Consensus 114 ~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~-~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~ 191 (260)
T COG1180 114 HVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGAD-NEPVLENLELLADLGVHVEIRTLVIPGYNDDEEE 191 (260)
T ss_pred cEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCC-cHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHH
Confidence 85 668999999999999988 89999999999 78788887544 499999999999999986655544 55678999
Q ss_pred HHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+.++++++.++. ....+.+.+|.|. ..+...++...+.+.+....++..
T Consensus 192 i~~i~~~i~~~~-~~~p~~~l~fhp~--~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 192 IRELAEFIADLG-PEIPIHLLRFHPD--YKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHHHHhcC-CcccEEEeccccC--ccccccCCCcHHHHHHhHhhhHHH
Confidence 999999999875 3566777777763 334444444455555555555544
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.60 E-value=4.2e-13 Score=129.51 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=139.5
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH--------HHcCCcEEEEecccCCCCCChhh-HHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTN-FNQIL 162 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~--------~~~G~~~v~l~~g~~~~~ge~~~-~~~l~ 162 (386)
++. +.+||.+|.||.... .+.. +.++.+||++.+..+ ...+++.|++.|- |||+. ++.+.
T Consensus 125 iSs-q~GCnl~C~FC~tg~---~g~~--rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGm-----GEPLln~d~v~ 193 (368)
T PRK14456 125 ISS-QAGCALRCSFCATGQ---MGFR--RNLTAGEITGQVFALSDMLAERNRERGITNIVFMGM-----GEPLLNTDNVF 193 (368)
T ss_pred EEe-cCCCCCCCCCCCCCC---CCCC--CCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCc-----CccccCHHHHH
Confidence 444 789999999998653 1222 348999999887433 1346788888762 56644 45799
Q ss_pred HHHHHHhhc----Cc---EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC----CCCHHHHHHHHHH-
Q 016605 163 EYVKDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH- 227 (386)
Q Consensus 163 ~~i~~ik~~----g~---~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~----~~s~~~~l~~i~~- 227 (386)
++++.+++. ++ .+ ..|+|. . +.+++|.++|++ .+.+|+++. ++.++++.| ..++++++++++.
T Consensus 194 ~~i~~l~~~~~~~~is~r~ItisT~Gl-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~ 271 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITISTVGI-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGY 271 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEECCCC-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence 999988753 22 23 455774 3 458999999997 899999999 999999964 3488999999984
Q ss_pred HHHcCCee--eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 228 VREAGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 228 a~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+.|..+ ...+|-|++++.+|+.+++++++.+ ...+.+.+|+|+++.++. +++.+.+.+...+.+.
T Consensus 272 ~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~---~~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 272 ASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF---FCKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLD 340 (368)
T ss_pred HHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC---CCeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHH
Confidence 66778664 4556667789999999999999988 357788889988887753 4667766666555554
No 108
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.59 E-value=1.2e-13 Score=136.61 Aligned_cols=182 Identities=11% Similarity=0.178 Sum_probs=128.9
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHc-CCcEEE--EecccCCCCCChhhHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA-GSTRFC--MGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~-G~~~v~--l~~g~~~~~ge~~~~~~l~~ 163 (386)
+...+...+..||++|.||......... ......|+.+++.+.++++.+. +...+. ++|| .|+......+..+.+
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-EPlL~~~~~~~~~~~ 91 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-ETLMRPLSFYKKALE 91 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-ccCCCcHHHHHHHHH
Confidence 3344555246999999999875321100 0112348999999999887764 444543 3443 444332223444555
Q ss_pred HHHHH-hhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeee
Q 016605 164 YVKDI-RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 164 ~i~~i-k~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+++.. +..++.+ ..|||. ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|++++++|+.+++.|+.++
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 55432 2345553 467886 78999999999997 899999999778887764 3589999999999999999887
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+++ ..++.+++.+++++++++| ++.+.|.+++|
T Consensus 171 i~~vv-~~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~ 205 (412)
T PRK13745 171 AMAVV-NDFNADYPLDFYHFFKELD--CHYIQFAPIVE 205 (412)
T ss_pred EEEEE-cCCccccHHHHHHHHHHcC--CCeEEEEeccC
Confidence 76555 4677888999999999997 78888888877
No 109
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.57 E-value=5.6e-13 Score=128.36 Aligned_cols=188 Identities=15% Similarity=0.258 Sum_probs=138.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH---H-Hc--C---CcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA---K-EA--G---STRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~---~-~~--G---~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
..+|+.+|.||.... .+. .+.++.+||++++... . .. | ++.|++.|+|.|+ ..++.+.+.++
T Consensus 109 q~GC~~~C~FC~tg~---~g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPL----ln~~~v~~~l~ 179 (354)
T PRK14460 109 QVGCAMGCTFCSTGT---MGF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPL----LNLDEVMRSLR 179 (354)
T ss_pred CCCcCCCCccCCCCC---CCC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCccc----CCHHHHHHHHH
Confidence 669999999997542 122 3358999999998433 2 22 2 5667777744332 34678889999
Q ss_pred HHhh-cCc-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHH-HHcCCe
Q 016605 167 DIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGIN 234 (386)
Q Consensus 167 ~ik~-~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a-~~~Gi~ 234 (386)
.+++ .|+ .+ ..|+|. .+.++.|.++|+..+.+++++. ++.++++.+. .+.++.+++++.. .+.|-.
T Consensus 180 ~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~ 257 (354)
T PRK14460 180 TLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRER 257 (354)
T ss_pred HHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCe
Confidence 8874 354 23 456886 6788999999998999999999 9999999774 3788899888754 344444
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|++++.+|+.+++++++.++ ..|.+.+|+|.+|.++ ++++.+++.+.....+.
T Consensus 258 v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 258 VTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWS 319 (354)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 556667788999999999999999984 3688889999888775 45677776666555544
No 110
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.57 E-value=4.5e-13 Score=129.51 Aligned_cols=176 Identities=20% Similarity=0.249 Sum_probs=139.9
Q ss_pred EEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChhhHHHHHHHH
Q 016605 87 QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 87 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~~~~~l~~~i 165 (386)
.....+++ |+.||.+|.||+..... . ....++.++..+....+.+.| ...+.++| |+|+..+++.+++
T Consensus 18 p~~~~~~~-t~~Cnl~C~~C~~~~~~--~--~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~ 86 (347)
T COG0535 18 PLVVGIEL-TNRCNLACKHCYAEAGK--K--LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIV 86 (347)
T ss_pred CcEEEEee-ccccCCcCcccccccCC--C--CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHH
Confidence 34445667 99999999999876432 1 123488999988888888888 54444444 5676778999999
Q ss_pred HHHhhc-CcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 166 KDIRDM-GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 166 ~~ik~~-g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
+.+++. ++.+ ..|||. ++++.++.++++|++.+.+++|+. ++.|+.++. ...++..+++++.+.+.|+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~ 166 (347)
T COG0535 87 EYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTT 166 (347)
T ss_pred HHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEE
Confidence 999855 6664 556774 678999999999999999999999 888888877 56899999999999999998555555
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+ ...+.+++.+.++.+.+++ +..+.+..++|.+
T Consensus 167 v-~~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 167 V-TKINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred E-ecCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 4 3678899999999999997 6788888888876
No 111
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.57 E-value=4.1e-13 Score=131.31 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=120.7
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhhH--HHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~--~~l~~~i~~ik~ 170 (386)
|..||++|.||......... ......|+.+.+.+.++.+.+. +...|.+.| |||+.. +.+.++++.+++
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~~~~~~ 85 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELMELQRK 85 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHHHHHHH
Confidence 58999999999875322111 1122348888888877766554 333456665 355443 344566666665
Q ss_pred cC---cE---EEEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeEeE
Q 016605 171 MG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGG 239 (386)
Q Consensus 171 ~g---~~---i~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~~~~ 239 (386)
.+ +. ..+|||. ++++.++.|++.|+ .|.+++|+.++.++..++ ..+++.++++|+.+++.|+.+.+.+
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 43 32 3568886 68899999999986 899999999778888774 4589999999999999999887777
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeEeeee-eeec
Q 016605 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAV 275 (386)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-f~P~ 275 (386)
++. ..+.+++.++++++.+++ ++.+.+.. +.|.
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred Eec-cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 764 456778999999999996 66666543 3453
No 112
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=1.1e-12 Score=126.47 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=135.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCChhh-HHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~ik~- 170 (386)
+.+||.+|.||.... .+. .+.++.+||++.+..+.. .++..|++.|- |||+. ++.+.++++.+++
T Consensus 108 q~GC~l~C~fC~tg~---~g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~~l~~~ 177 (343)
T PRK14469 108 QVGCPVKCIFCATGQ---SGF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIKILNHK 177 (343)
T ss_pred cCCCCCcCcCCCCCC---CCc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHHHHhch
Confidence 689999999998643 122 234899999998865432 35677888762 46644 4678888888752
Q ss_pred ----cCc-EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeee--
Q 016605 171 ----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC-- 236 (386)
Q Consensus 171 ----~g~-~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~-- 236 (386)
.|. .+ ..|+|. .+.++.|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++.+.+. +..+.
T Consensus 178 ~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~ 255 (343)
T PRK14469 178 KMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIE 255 (343)
T ss_pred hcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 233 33 356785 6788999999998 699999999 889998764 45899999999876554 55544
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
..++-|.+++.+|+.+++++++.++ ..|.+.+|.|.++ ...+++.+++.++...++..
T Consensus 256 yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 256 YILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKN 313 (343)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHC
Confidence 4566677899999999999999884 3677778877654 34556777766666555543
No 113
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.56 E-value=1.8e-12 Score=124.67 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=139.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---c------C--CcEEEEecccCCCCCChh-hHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFNQILE 163 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~------G--~~~v~l~~g~~~~~ge~~-~~~~l~~ 163 (386)
+.+|+.+|.||+... .+. .+.++.+||++.+..+.. . | ++.|+|.|- |||+ +++.+.+
T Consensus 128 QvGC~m~C~FCatg~---~g~--~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-----GEPLlN~d~V~~ 197 (373)
T PRK14459 128 QAGCGMACPFCATGQ---GGL--TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-----GEPLANYKRVVA 197 (373)
T ss_pred cCCCCCcCCCCCCCC---CCC--CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-----CcchhhHHHHHH
Confidence 779999999998542 222 245899999999887653 1 1 456777662 5775 5899999
Q ss_pred HHHHHhh-----cCc---EEEE-ecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH
Q 016605 164 YVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR 229 (386)
Q Consensus 164 ~i~~ik~-----~g~---~i~~-t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~ 229 (386)
.++.+++ .|+ .+.+ |.|.. ..+++|.+.+++ .+.+++.+. ++.++++.|. .+.++++++++...
T Consensus 198 ~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~ 275 (373)
T PRK14459 198 AVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYA 275 (373)
T ss_pred HHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 9999976 355 3433 45653 467888888877 789999999 9999999883 58899999966654
Q ss_pred -HcCCeeeE--eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 230 -EAGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 230 -~~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.|..+.. .+|-|.+++.++..++.++++.++.....|.+.+|+|.++.++. .++.+.+.++....+.
T Consensus 276 ~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~---~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 276 DATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT---ASPPEVEREFVRRLRA 346 (373)
T ss_pred HHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc---CCCHHHHHHHHHHHHH
Confidence 66877554 55567799999999999999988422457899999998887653 3566665555555543
No 114
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.55 E-value=3.7e-13 Score=124.20 Aligned_cols=169 Identities=18% Similarity=0.286 Sum_probs=135.2
Q ss_pred CCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 98 GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 98 ~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
.|+++|.||...........+......+.|.+..+.+... .++.+.|++. |||.++.++-++|+.+|+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHhc
Confidence 8999999998743322222244457899999999887765 4667777763 6888899999999999998
Q ss_pred C-cE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC---CHHHHHHHHHHHHHc-CCe--eeEeEEee
Q 016605 172 G-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA-GIN--VCSGGIIG 242 (386)
Q Consensus 172 g-~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~---s~~~~l~~i~~a~~~-Gi~--v~~~~i~G 242 (386)
| +. ..+|||.+ ++.++.|. -.|.+.+++|+. ++.|++|++++ +|++++++++.+++. .-. +.++++=|
T Consensus 108 g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg 184 (296)
T COG0731 108 GKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKG 184 (296)
T ss_pred CCceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecc
Confidence 8 55 57899988 88888887 378999999999 89999999864 799999999999996 333 45555556
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
++.+.+++.+.+++++.+. |+.|.+..++-.|
T Consensus 185 ~N~~~e~~~~~a~ll~~~~--Pd~velk~~~rpg 216 (296)
T COG0731 185 INDDEEELEEYAELLERIN--PDFVELKTYMRPG 216 (296)
T ss_pred ccCChHHHHHHHHHHHhcC--CCeEEEecCccCC
Confidence 6777778999999999995 8999999887544
No 115
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.55 E-value=1.8e-12 Score=124.46 Aligned_cols=187 Identities=17% Similarity=0.237 Sum_probs=134.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-C-----CcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G-----~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
+.+|+.+|.||.... .+ ..+.++.+||++.+..+... | ++.|+|.|.| || .+++.+.+.++.+
T Consensus 100 q~GC~l~C~fC~tg~---~g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmG-----EPlln~~~v~~~i~~l 169 (343)
T PRK14468 100 MVGCPAGCAFCATGA---MG--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMG-----EPLLNYENVLKAARIM 169 (343)
T ss_pred cCCCCCcCCCCCCCC---CC--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccC-----ccccCHHHHHHHHHHh
Confidence 789999999997642 12 23458999999988765432 2 4567777743 45 3568888888887
Q ss_pred h-hcCc-----EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHH-HHcCCee
Q 016605 169 R-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGINV 235 (386)
Q Consensus 169 k-~~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a-~~~Gi~v 235 (386)
. ..++ .+ ..|+|. ...+++|.+.+++ .+.+++++. ++.++++.|. .+.++.+++++.. .+.+..+
T Consensus 170 ~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V 247 (343)
T PRK14468 170 LHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRV 247 (343)
T ss_pred cccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeE
Confidence 4 3333 23 456784 4678888888877 689999999 8999999853 3789999999754 4455554
Q ss_pred --eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 --CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 --~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
...+|-|.+++.+++.++.++++.+. ..+.+.+|.|+++.. ..+++.+++.+..+..+.
T Consensus 248 ~ieyvLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~~ 308 (343)
T PRK14468 248 TLEYTMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGSP---FQSSPRAQILAFADVLER 308 (343)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCCC---CCCCCHHHHHHHHHHHHH
Confidence 45556677899999999999999883 478888888876543 456777776665555544
No 116
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=99.54 E-value=2.4e-14 Score=111.55 Aligned_cols=93 Identities=51% Similarity=0.750 Sum_probs=84.7
Q ss_pred eeeeeeecCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCCh
Q 016605 268 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDF 346 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~-~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~ 346 (386)
+++.|+|.+|||+++. +.++.++++++++++|+++|+..|++++++....++.+..+|.+|||+++.|..++|+.+...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 3678999999999887 789999999999999999999999999999766667788889999999999987999999999
Q ss_pred hHHHHHHHHcCCCc
Q 016605 347 DADQLMFKVLGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~~G~~p 360 (386)
.++++||+++||.|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999976
No 117
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=99.54 E-value=1.7e-14 Score=112.08 Aligned_cols=91 Identities=43% Similarity=0.662 Sum_probs=70.9
Q ss_pred eeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCC-CChh
Q 016605 269 INALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN-NDFD 347 (386)
Q Consensus 269 ~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~-~~~~ 347 (386)
++.|+|.+||++++.+.++.++++++++++|+++|+..|++++++.....+.+..++.+|||+++.|+ |.++.+ .+.+
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~-ylt~~g~~~~~ 80 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGG-YLTTSGNRSVD 80 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CS-BTSSSCTSHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECC-ccccCCCCCHH
Confidence 55699999999999999999999999999999999999999999975444577899999999999999 777766 9999
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
++.+||+++||+|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999987
No 118
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=3.9e-12 Score=122.70 Aligned_cols=187 Identities=14% Similarity=0.268 Sum_probs=135.9
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..||+.+|.||..... + ..+.++++||++.+..... .|++.|++.|+ |||+ +++.+.++++.+
T Consensus 116 qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm-----GEPLln~~~v~~~l~~l 185 (356)
T PRK14455 116 QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI-----GEPFDNYDNVMDFLRII 185 (356)
T ss_pred CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-----ccccCCHHHHHHHHHHH
Confidence 5699999999986632 2 2345899999998875432 24667777764 4564 479999999999
Q ss_pred hh-cCc-----EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCee
Q 016605 169 RD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINV 235 (386)
Q Consensus 169 k~-~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~v 235 (386)
++ .|+ .+ ..|+|.. ..+..+.+.++. .+.+++++. ++.++++.+ ..+.++++++++.+.+ .+..+
T Consensus 186 ~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v 263 (356)
T PRK14455 186 NDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRV 263 (356)
T ss_pred hcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeE
Confidence 85 465 43 4567865 345666676654 255899999 899998665 4578999999998765 45555
Q ss_pred e--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
. ..+|-|.+++.+++.+++++++.++ ..|.+.+|+|.++.++. +++.+++.+....++.
T Consensus 264 ~iey~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky~---~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 264 TFEYILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDYV---RTPKEDIFAFEDTLKK 324 (356)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCCc---CCCHHHHHHHHHHHHH
Confidence 4 4566677999999999999999984 57889999998877653 4567776666555544
No 119
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.51 E-value=5.8e-12 Score=121.47 Aligned_cols=187 Identities=15% Similarity=0.243 Sum_probs=134.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
..+||.+|.||+... .+. .+.++.+||++.+..+.. .+++.|++.|. ||| ..++.+.+.++.+
T Consensus 112 Q~GC~l~C~fC~t~~---~g~--~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 112 QVGCALGCTFCATAK---GGF--NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKAMEIM 181 (355)
T ss_pred CCCCCCcCCCCCCCC---CCC--CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHHHHHh
Confidence 568999999998653 121 234899999998765432 23566777764 456 4457888888888
Q ss_pred hh-cC--c---EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCee
Q 016605 169 RD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV 235 (386)
Q Consensus 169 k~-~g--~---~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~v 235 (386)
++ .| + .+ ..|+|.. +.+++|.+.+++ .+.+++++. ++.++++.+. .++++++++++. +.+.|..+
T Consensus 182 ~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~V 259 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRV 259 (355)
T ss_pred hcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEE
Confidence 63 33 4 34 4467865 568888887887 578999999 8999998763 368999988875 55677765
Q ss_pred e--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
. ..+|-|++++.+++..+.++++.++ ..|.+.+|.|+++..+ .+++.+++.+.....+.
T Consensus 260 tieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 260 TFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 4 4555677889999999999999984 3678888888877654 44677776665554443
No 120
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.50 E-value=5e-12 Score=121.57 Aligned_cols=199 Identities=17% Similarity=0.234 Sum_probs=137.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++. +.+|+.+|.||.... .+. .+.++.+||++.+..+.. .+++.|++.|.|.|+ ..++.+.+.++.+++
T Consensus 107 vSs-q~GC~~~C~FC~tg~---~~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl----~n~~~vi~~l~~l~~ 176 (349)
T PRK14463 107 ISS-QVGCAMGCAFCLTGT---FRL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPL----ANLDNVIPALQILTD 176 (349)
T ss_pred EEe-cCCcCCCCccCCCCC---CCC--CCCCCHHHHHHHHHHHHhcCCccEEEEecCCcch----hcHHHHHHHHHHhhc
Confidence 454 889999999997542 122 345899999998877653 468888888754333 356788888888864
Q ss_pred -cCc-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCee--e
Q 016605 171 -MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINV--C 236 (386)
Q Consensus 171 -~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v--~ 236 (386)
.|+ .+ ..|+|.+ + .+.++.+..--.+.+++++. ++.++++.| ..+.++.+++++...+. +..+ .
T Consensus 177 ~~gl~~s~r~itVsTnGl~-~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ie 254 (349)
T PRK14463 177 PDGLQFSTRKVTVSTSGLV-P-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIE 254 (349)
T ss_pred ccccCcCCceEEEECCCch-H-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 454 33 3467853 3 34445443322455899999 999999855 45789999888776654 3444 4
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
..+|-|.+++.+++.++.++++.++ ..+.+.+|.|.++. +.++++.+++.+.....+..--...++
T Consensus 255 yvLI~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~~~gi~v~vR 320 (349)
T PRK14463 255 YVMIRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLLDKHVTVITR 320 (349)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHHHCCceEEEe
Confidence 5666677999999999999999984 37888888887764 345677887777666665433333333
No 121
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=7.2e-12 Score=119.66 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=134.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhh-HHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~ik~~ 171 (386)
+.+|+++|.||+.... +.. +.++.+||++.+..+.+. .++.|++.|- |||+. ++.+.++++.+++.
T Consensus 104 q~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~~l~~~ 173 (336)
T PRK14470 104 QAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAYALCDP 173 (336)
T ss_pred CCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHHHHhCc
Confidence 6799999999987632 222 236888999887765432 4677888773 46644 68888888888742
Q ss_pred ------CcEE-EEecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHHHcCCe--eeE
Q 016605 172 ------GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGIN--VCS 237 (386)
Q Consensus 172 ------g~~i-~~t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~~~Gi~--v~~ 237 (386)
+..+ ..|+|.. + .+++|.+.|. +.+.+|+++. ++.+++|.|. .++++.+++++...+.+.. +..
T Consensus 174 ~~~~~~~~~ItVsTnG~~-p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~iey 251 (336)
T PRK14470 174 AGARIDGRRISISTAGVV-P-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEY 251 (336)
T ss_pred cccccCCCceEEEecCCh-H-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 2334 4568874 3 4556666665 7899999999 9999999774 4799999999998887765 455
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 298 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~ 298 (386)
.+|-|.+++++|+.++.++++.+. -.+.+.+|.|.++ ...+++.+++.+.....
T Consensus 252 vLI~GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 252 VMISGVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEEecccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHH
Confidence 666788999999999999999884 4677778887554 34567777766665554
No 122
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.48 E-value=4.9e-12 Score=123.35 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=127.0
Q ss_pred CCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecC--CCCHHHHHHHHH
Q 016605 120 KLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLG--MLEKHQAIELKK 192 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g--~l~~e~l~~Lk~ 192 (386)
..++++|++++++..... ....+.+.|| |+|..++++.++++.+++.++.+++ |+| ..+++.++++++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~ 126 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID 126 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH
Confidence 458999999999886642 2356777775 3567789999999999988877543 775 458999999999
Q ss_pred hccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCH-HHHHHHHHHHhcCCCCCCeEeee
Q 016605 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 193 aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+|++.+++++++. ++.++++.+....+.+++.++.+.+ ++.+.+.+++-.|-|+ +++.++++++.+++ +..+.+.
T Consensus 127 ~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg--~~~V~L~ 203 (404)
T TIGR03278 127 NGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG--AKALILM 203 (404)
T ss_pred cCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC--CCEEEEE
Confidence 9999999999999 9999998776666999999999998 4665544444334443 45579999999996 7889999
Q ss_pred eeeecCCC-------C-CCCCCCCCHHHHHHHH
Q 016605 271 ALLAVKGT-------P-LQDQKPVEIWEMIRMI 295 (386)
Q Consensus 271 ~f~P~~gT-------~-l~~~~~~s~~e~~~~~ 295 (386)
+|.+.... + +.+..+.+.+++.+++
T Consensus 204 ~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v 236 (404)
T TIGR03278 204 RFANTEEQGLILGNAPIIPGIKPHTVSEFKNIV 236 (404)
T ss_pred ecccccccccccCCcCcccCCCCCCHHHHHHHH
Confidence 98864422 1 1224566777777763
No 123
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.47 E-value=5.4e-12 Score=122.16 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=131.2
Q ss_pred CCC-CCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcE--EEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~-C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~--v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
|.. ||++|.||....... ..+.|+.+.+.+.++.+.+. +... |...|| .|+...+..++.+..+.+..+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GG-EPlL~~~~f~~~~~~l~~k~~~- 87 (378)
T COG0641 14 TGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQGG-EPLLAGLDFYRKAVALQQKYAN- 87 (378)
T ss_pred ccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECC-ccccchHHHHHHHHHHHHHHhc-
Confidence 666 999999998875431 11248888888888877764 4455 455654 3333222233333333333333
Q ss_pred CcEE---EEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 172 GMEV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 172 g~~i---~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
+..+ ..|||. ++++.++.|++.|+ .|.+++|+.++++++.|+ ..+++.++++|+.+++.++.+++.+++ .
T Consensus 88 ~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv-~ 165 (378)
T COG0641 88 GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVV-N 165 (378)
T ss_pred CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEE-c
Confidence 5443 467876 79999999999999 999999999999999884 458999999999999999888876664 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC--CCCCCCCCHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIWEMIRMI 295 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~--l~~~~~~s~~e~~~~~ 295 (386)
.++.+...++++++.+.+ ...+.|.+.++..++. +... ..+.+++.+.+
T Consensus 166 ~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~-~~~~~~~~~fl 216 (378)
T COG0641 166 RQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEF-SVTAEEYGQFL 216 (378)
T ss_pred hhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCcccccc-ccCHHHHHHHH
Confidence 788899999999999986 6777776665544332 2222 23455555543
No 124
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=118.69 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=149.2
Q ss_pred CCCCCcCCCCCCCCCCCCCC--C-----cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTG--V-----KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~--~-----~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
-.+|..+|.||++.+..... . -.++....+++++-...... ..++++++.-. .|....++..+++.+
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i~-----~p~~~~d~~~i~~~~ 111 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQIA-----YPRALNDLKLILERL 111 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceeec-----cccccchhhhhhhhh
Confidence 48999999999886532111 0 11233455666655443221 25678876432 234556777788888
Q ss_pred h-hcCcEEEEe--c-CCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC----CCCHHHHHHHHHHHHHc-C-CeeeE
Q 016605 169 R-DMGMEVCCT--L-GMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVREA-G-INVCS 237 (386)
Q Consensus 169 k-~~g~~i~~t--~-g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~----~~s~~~~l~~i~~a~~~-G-i~v~~ 237 (386)
+ ..+.++.++ . .....+.+...++.|.+.+.+.+|.. +++++++++ .|+|++.++.++.+.++ | -.+++
T Consensus 112 ~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~i 191 (339)
T COG2516 112 HIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGI 191 (339)
T ss_pred hhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcce
Confidence 7 666664333 1 11228889999999999999999999 899999843 46899999999998775 6 57999
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 310 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~ 310 (386)
++++|+|+++.++.+++..+...+ -.+++..|.|..||.|.+..+++.+.+. .+++++.++.+..+.+.
T Consensus 192 hliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~Yr-k~q~a~yli~~G~v~~~ 260 (339)
T COG2516 192 HLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVERYR-KIQVARYLIGNGEVDLE 260 (339)
T ss_pred eEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHHHH-HHHHHHHHHhcCccchh
Confidence 999999999999999999999885 4678899999999999998887777654 46666676665544433
No 125
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=2.1e-11 Score=115.99 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=135.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-cC
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-MG 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~-~g 172 (386)
+-+|+.+|.||.... .+.. +.++.+||++.+..+.. .+++.|++.|- ||| .+++.+++.++.+++ .|
T Consensus 110 QvGC~~~C~FC~Tg~---~g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL~N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 110 QVGCKMNCLFCMTGK---QGFT--GNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPLDNLDEVLKALEILTAPYG 179 (345)
T ss_pred CCCCCCCCCCCCCCC---CCCC--CCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCcccHHHHHHHHHHHhhccc
Confidence 459999999998553 1222 34899999999987753 25788888773 355 346888888888763 34
Q ss_pred c-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCe--eeEeE
Q 016605 173 M-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGIN--VCSGG 239 (386)
Q Consensus 173 ~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~~-~Gi~--v~~~~ 239 (386)
+ .+ ..|+|.. +. ++++.+..-..+.+++.+. ++.++++.|. .+.++.+++++...+ .|-. +...+
T Consensus 180 ~~~s~r~ItVsT~G~~-~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 180 YGWSPKRITVSTVGLK-KG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred cCcCCceEEEEcCCCc-hH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 3 34 3467743 33 3343332234677899999 8999999884 368999999988544 3434 55556
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
|-|.+++.+|+.++.++++.++ ..|.+.+|+|.|+.+ ..+++.+.+.+.....+..--...++
T Consensus 258 i~gvND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~---~~~~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVD---LEGSDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCC---CcCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 6678999999999999999883 689999999999864 34567777666666555533333333
No 126
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=99.46 E-value=1.7e-12 Score=116.01 Aligned_cols=195 Identities=20% Similarity=0.323 Sum_probs=144.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
|-+....|...|.||+.....+ +. .+++-|-...++++++-|...|++++.+++... +..-+.+.+.++.+|+.
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~----Pp-PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k 187 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRN----PP-PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEK 187 (360)
T ss_pred EEeecCccccCcceeeeecCCC----Cc-CCCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhh
Confidence 3344889999999999764321 11 145556666777778889999999988766542 34557899999999966
Q ss_pred CcEE---EEecC-CCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHc--CCeeeEeEEeecC
Q 016605 172 GMEV---CCTLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIGLG 244 (386)
Q Consensus 172 g~~i---~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glg 244 (386)
..++ +.++. .-+-+.++.+...|+|.+.+++|+.+++-..++- ..+|.+.+..++.+++. ++-..+.+|+|+|
T Consensus 188 ~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglg 267 (360)
T KOG2672|consen 188 APEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLG 267 (360)
T ss_pred CcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccC
Confidence 5443 22332 2467889999999999999999999888777765 44899999999999986 4556778999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 294 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~ 294 (386)
||+|++..+++.++..+ ++-+.+..|++....-+.-..-.+++.+..+
T Consensus 268 etdeei~~tl~dLr~~~--vdv~t~gqym~ptkrhl~v~eyvtpekf~~w 315 (360)
T KOG2672|consen 268 ETDEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHLKVKEYVTPEKFDYW 315 (360)
T ss_pred CCHHHHHHHHHHHHHcC--CcEEecccccCCccccceeEEeeCHHHHHHH
Confidence 99999999999999996 7888998888633222322233455554433
No 127
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.46 E-value=2.1e-11 Score=116.88 Aligned_cols=189 Identities=15% Similarity=0.286 Sum_probs=134.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~ 170 (386)
+.||+.+|.||+... .+. .+.++.+||++++..+.. .++..|++.|. ||| .+++.+.+.++.+++
T Consensus 106 q~GC~l~C~FC~t~~---~G~--~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGm-----GEPL~N~d~v~~~l~~l~~ 175 (348)
T PRK14467 106 QVGCAVGCKFCATAK---DGL--IRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGM-----GEPLANYENVRKAVQIMTS 175 (348)
T ss_pred CCCCCCcCcCCCCCC---CCC--cCCCCHHHHHHHHHHHHHHhccCCCCeEEEEcc-----ChhhcCHHHHHHHHHHHcC
Confidence 789999999998753 222 245899999998876554 24677877763 456 567999999999974
Q ss_pred -cCc-----EEE-EecCCCCHHHHHHHHHh----ccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCe
Q 016605 171 -MGM-----EVC-CTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGIN 234 (386)
Q Consensus 171 -~g~-----~i~-~t~g~l~~e~l~~Lk~a----G~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~ 234 (386)
.|+ .+. .|+|.. ..++++... .++ +.+++.+. ++.++++.|. .+.++.+++++... +.|-+
T Consensus 176 ~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 176 PWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred hhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 566 443 457765 334444432 343 44899999 9999999874 36787887776543 56665
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+...+|-|.+++.+++.++.++++.++ +...|.+.+|.|.++.++ ++++.+++.+.....+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~ 317 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDN 317 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHC
Confidence 455566677899999999999999884 356788888888877654 566777766655555543
No 128
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.45 E-value=2.3e-11 Score=116.63 Aligned_cols=187 Identities=13% Similarity=0.217 Sum_probs=135.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
..||+.+|.||+... .+. .+.++++||++++..+... ....+++.|+ ||| .+++.+.++++.+
T Consensus 117 QvGC~~~C~FCatg~---~g~--~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~l~~l 186 (356)
T PRK14462 117 QVGCKVGCAFCLTAK---GGF--VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKAIKIF 186 (356)
T ss_pred cccCCCCCccCCCCC---CCC--cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHHHHHh
Confidence 459999999997653 222 2458999999998765542 1346666654 455 5679999999999
Q ss_pred hh-cCcE-----EEE-ecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe-
Q 016605 169 RD-MGME-----VCC-TLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN- 234 (386)
Q Consensus 169 k~-~g~~-----i~~-t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~- 234 (386)
++ .|+. +.+ |.|.. +.+++|.+.++ -.+.+++.+. ++.++++.+. .+.++.+++++. +.+.|-.
T Consensus 187 ~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i 264 (356)
T PRK14462 187 SENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRV 264 (356)
T ss_pred cCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeE
Confidence 86 4663 333 56765 46777877654 3466789999 8999999873 356889998874 4466765
Q ss_pred -eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 -VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 -v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|.+++.+++..++++++.++ ..|.+.+|.|+++.++ ++++.+++.+...+++.
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNS 325 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 555667788999999999999999984 5889999999887765 55677776666555554
No 129
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=4.6e-11 Score=114.56 Aligned_cols=187 Identities=14% Similarity=0.276 Sum_probs=135.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~- 170 (386)
..+|+.+|.||.... .+.. +.++.+||++++..+... +++.|++.|. ||| .+++.+.+.++.+++
T Consensus 108 qvGC~~~C~FC~tg~---~g~~--rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 108 QVGCPMACDFCATGK---GGLK--RSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCCCCcCCcCCCCC---CCCc--cccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHHHHhcc
Confidence 459999999997653 2222 238999999998876542 4677888773 355 346889999998874
Q ss_pred cCc---EEE-EecCCCCHHHHHHHHHhc------cC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 016605 171 MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (386)
Q Consensus 171 ~g~---~i~-~t~g~l~~e~l~~Lk~aG------~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~ 234 (386)
.++ .+. .|.|. .+.+++|.+.+ .+ .+.+++.+. ++.++++.|. .+.++.+++++. +.+.|-.
T Consensus 178 ~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 178 LGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred cCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 455 333 34664 34578887766 23 477899999 9999999773 368888877755 6677755
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|++++.+++.++.++++.++ ..|.+.+|.|.++.++ .+++.+++.+....++.
T Consensus 256 I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 317 (345)
T PRK14457 256 VSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQ 317 (345)
T ss_pred EEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 566677788999999999999999984 3788889988877654 45677776666555544
No 130
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.43 E-value=2e-11 Score=115.63 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCChhhHHHH-HHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~~~~~~l-~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
++.+++.+.+..... .+...|.++| |||+...++ .++++.+++.|+.+ ..|||.+..+.+..+.+ .+|
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~-~~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP-YVD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh-hCC
Confidence 578888887765432 2334576765 567666665 69999999888764 56899888788888776 478
Q ss_pred eeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--EeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+.+++++. ++.|+++.+ .+++.+++.++.+.+.|+.+.+.+ +.|..++.+++.++++++++++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 889999999 889998865 478999999999999998766554 4556788899999999999986225688888888
Q ss_pred ecCCCC---------CCCCCCCCHHHHHHHHHHH
Q 016605 274 AVKGTP---------LQDQKPVEIWEMIRMIATA 298 (386)
Q Consensus 274 P~~gT~---------l~~~~~~s~~e~~~~~a~~ 298 (386)
|.+..+ +.+.+.++.+++.++...+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 291 (295)
T TIGR02494 258 RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIF 291 (295)
T ss_pred chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHH
Confidence 876333 3345667877777655443
No 131
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.43 E-value=1.1e-11 Score=118.34 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=131.3
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR- 169 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik- 169 (386)
+.+ |.+||.+|.||...... . .+ ..++.+++.+.+..+.+ .+++.|.++|| .|....+..+.++++.++.+.
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~--~-~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL~~~d~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP--Y-QE-NQPNKAQWKEALEYIAQHPEINEVILSGG-DPLMAKDHRLDWLLNLLEQIPH 173 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC--C-CC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCc-ccccCCchHHHHHHHHHHhCCC
Confidence 345 99999999999865321 1 11 13566777776766664 48888888874 333222222333343333332
Q ss_pred --hcCcEE---EEecCCCCHHHHHHHHHhccCeee-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--
Q 016605 170 --DMGMEV---CCTLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII-- 241 (386)
Q Consensus 170 --~~g~~i---~~t~g~l~~e~l~~Lk~aG~~~v~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~-- 241 (386)
..++.. .+.+..++++.++.|+++|+..+. +++++.++++ ++..++++.++++|+.+....++
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceeeC
Confidence 122221 122235789999999999988775 5888875543 44778999999999986554444
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
|.+++.+++.++.+.+.+++ +..+.++.+.|.+|+. .-..+.++..+++..++..++.
T Consensus 245 giNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~---~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAA---HFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCcc---cccCCHHHHHHHHHHHHHhCCC
Confidence 66789999999999999997 6777888888888755 2356888888988888877765
No 132
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.42 E-value=1.2e-11 Score=118.47 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=132.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhH--HHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNF--NQILEYVKD 167 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~--~~l~~~i~~ 167 (386)
.+.+ |.+||.+|.||...... .... ..+.+++.+.++.+.. .|+..|.|+||. |+.. +.+.++++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~--~~~~--~~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~ 184 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFP--YKEN--PGNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKR 184 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcC--CCCC--CccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHH
Confidence 4556 99999999999864321 1111 1236777777777765 478899888753 3322 236666666
Q ss_pred Hhhc----CcEEEE-ecC----CCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE
Q 016605 168 IRDM----GMEVCC-TLG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (386)
Q Consensus 168 ik~~----g~~i~~-t~g----~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~ 237 (386)
+++. ++.+.+ +++ .++++.++.|+++|+..+.++.... +++ .++..++++.++++|+.+..
T Consensus 185 L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~ 255 (331)
T TIGR00238 185 LEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLN 255 (331)
T ss_pred HHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEe
Confidence 6653 233333 233 2699999999999998887776554 332 26778999999999998554
Q ss_pred --eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 238 --GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 238 --~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
.++-|.+++.+++.++.+.+.+++ +..+.++.+.|.+|+. .-..+.++..+++..++..++.
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCC
Confidence 455566888899999999999996 6677778888888763 2346788888888888877765
No 133
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.40 E-value=8.9e-11 Score=112.64 Aligned_cols=187 Identities=17% Similarity=0.307 Sum_probs=132.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~- 170 (386)
..||+.+|.||+... .+. .+.++++||++.+...... .+..+++.|| ||| .+++.+.++++.+++
T Consensus 108 qvGC~~~C~FC~tg~---~G~--~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~~l~~~ 177 (342)
T PRK14454 108 QVGCRMGCKFCASTI---GGM--VRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLKIVNSP 177 (342)
T ss_pred CCCCCCcCCcCCCCC---CCC--cccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHHHHhcc
Confidence 779999999997642 222 2348999999998876542 2445554443 456 466889999999985
Q ss_pred cCc-----EEEE-ecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe--ee
Q 016605 171 MGM-----EVCC-TLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN--VC 236 (386)
Q Consensus 171 ~g~-----~i~~-t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~--v~ 236 (386)
.|+ .+++ |+|... . +++|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. +.+.|.+ +.
T Consensus 178 ~gi~~~~r~itvsTsG~~p-~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~ie 255 (342)
T PRK14454 178 YGLNIGQRHITLSTCGIVP-K-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFE 255 (342)
T ss_pred cccCcCCCceEEECcCChh-H-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 566 4443 567653 3 566766542 2377899999 8999998873 267777777655 5566766 45
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
..+|-|++++.+++.++.++++.+ ...|.+.+|.|.++..+ .+++.+++.+...+.+.
T Consensus 256 y~LI~gvNDs~eda~~La~llk~l---~~~VnLiPyn~~~~~~~---~~ps~e~l~~f~~~l~~ 313 (342)
T PRK14454 256 YALVKGVNDSKEDAKELGKLLKGM---LCHVNLIPVNEVKENGF---KKSSKEKIKKFKNILKK 313 (342)
T ss_pred EEeECCCCCCHHHHHHHHHHHhcC---CceEEEEecCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 566778899999999999999988 35788888888776644 45677776666555554
No 134
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.38 E-value=8.5e-11 Score=114.37 Aligned_cols=192 Identities=14% Similarity=0.190 Sum_probs=134.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
++.+ |+.|+..|.||...... + .....++.+++.+.++.+.+ .+++.|.|+||+ |....+..++.+ ++.++
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~--g-~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD-PLll~d~~L~~i---L~~L~ 182 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKV--G-DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD-PLLLSDDYLDWI---LTELR 182 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccC--C-cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc-cccCChHHHHHH---HHHHh
Confidence 4556 99999999999765321 1 12234789999999988887 489899888753 222222223333 44444
Q ss_pred hc-CcE---EEEe-----cCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--Ee
Q 016605 170 DM-GME---VCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SG 238 (386)
Q Consensus 170 ~~-g~~---i~~t-----~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~--~~ 238 (386)
+. +++ +.+. +-.++++.++.|++++..++.+.++..+++ .++..++++.++++|+.+. +.
T Consensus 183 ~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 183 AIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred hcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeece
Confidence 43 333 3222 334789999999999987888888876442 5888999999999999854 45
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++-|.+++.+-+.++.+.+.+++ +.-..++..-+.+|+.- =..+.++-++++..+|-.++.
T Consensus 254 LLkGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~h---Frv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 254 LLAGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSH---FRTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred EECCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCccc---ccCcHHHHHHHHHHHHHhCCC
Confidence 55678999999999999999987 44445555556667642 235778888888888877665
No 135
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.37 E-value=8.3e-13 Score=117.35 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=146.4
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
++. |..||++|.||-.+... .-.+..+.++.+|+++.+......|++.+-+.| |+|..+.++.+.+..+...
T Consensus 15 isl-te~cnlrc~ycMpsegv-~l~pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l 86 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGV-PLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSL 86 (323)
T ss_pred hhh-hhccccccceechhcCC-cCccchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcc
Confidence 344 89999999999765332 122334568999999999999999998886655 5666667777776666543
Q ss_pred -CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCC
Q 016605 172 -GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEA 246 (386)
Q Consensus 172 -g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget 246 (386)
|++ -.++||..+...+-.|.++|++.+++++|+. ++-+.++.+...+..++..++.+.+.|.. +.+++.+--|.+
T Consensus 87 ~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n 166 (323)
T KOG2876|consen 87 PGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLN 166 (323)
T ss_pred cchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccC
Confidence 333 1367899889999999999999999999999 89999999999999999999999998864 444444422445
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a 296 (386)
.+++.++..+-+.. +--|.+..|+|..|..+......+..+.+.++.
T Consensus 167 ~~ev~Dfv~~tr~~---p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~ 213 (323)
T KOG2876|consen 167 EDEVFDFVLLTRMR---PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV 213 (323)
T ss_pred CCcccceeeecCCC---CcceEEEEecccCCCcccccccccHHHHHHHHh
Confidence 55777776665554 556889999999998887766777776665543
No 136
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.36 E-value=2.6e-10 Score=110.22 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=130.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc----------CCcEEEEecccCCCCCCh-hhHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRK-TNFNQILEY 164 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----------G~~~v~l~~g~~~~~ge~-~~~~~l~~~ 164 (386)
.-||+.+|.||.... .+. .+.++.+||++.+..+... +++.|++.|+ ||| .+++.+.+.
T Consensus 110 QvGC~~~C~FC~t~~---~g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d~v~~a 179 (372)
T PRK11194 110 QVGCALECKFCSTAQ---QGF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVPA 179 (372)
T ss_pred CCCCCCcCCCCCCCC---CCC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHHHHHHH
Confidence 369999999998653 222 2348999999988665431 2566676664 456 457888899
Q ss_pred HHHHh-hcC--c---EEEE-ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcC
Q 016605 165 VKDIR-DMG--M---EVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAG 232 (386)
Q Consensus 165 i~~ik-~~g--~---~i~~-t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~G 232 (386)
++.++ +.| + .+.+ |.|.. ..+++|.+..--.+.+++.+. ++.++++.|. ...++.+++++. +.+.|
T Consensus 180 l~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~ 257 (372)
T PRK11194 180 MEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSN 257 (372)
T ss_pred HHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcc
Confidence 98887 344 3 4433 56754 346666665422455689988 8999999873 356778777655 44453
Q ss_pred -----CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 233 -----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 233 -----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+...+|-|.+++.+++.+++++++.++ ..|.+.+|.|+++.++ ++++.+++.+.....+.
T Consensus 258 ~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 258 ANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred cCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 45777788899999999999999999984 4889999999887655 45677776665555544
No 137
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.36 E-value=2.7e-10 Score=108.75 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=131.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~ 171 (386)
..||+.+|.||+... .+.. +.++.+||++.+-.+.+ ..+..|++.|- ||| .+++.+.+.++.+++.
T Consensus 112 QvGC~m~C~FC~tg~---~g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmGm-----GEPL~N~d~V~~~~~~l~~~ 181 (342)
T PRK14465 112 QIGCTLNCKFCATAK---LEFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMGM-----GEPMHNYFNVIRAASILHDP 181 (342)
T ss_pred cCCCCCCCCCCcCCC---CCcc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEcC-----CcchhhHHHHHHHHHHHhCh
Confidence 559999999998753 2322 34799999998876654 24667777662 566 5568999999988742
Q ss_pred ---Cc---EE-EEecCCCCHHHHHHHHH-hccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCeee--
Q 016605 172 ---GM---EV-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGINVC-- 236 (386)
Q Consensus 172 ---g~---~i-~~t~g~l~~e~l~~Lk~-aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~-~~Gi~v~-- 236 (386)
++ .+ ..|+|.+ +. +.+|.+ ..--.+.+|+++. ++.+.++.| ..+.++.+++++... +.|-.+.
T Consensus 182 ~~~~~~~r~itvST~G~~-~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ie 259 (342)
T PRK14465 182 DAFNLGAKRITISTSGVV-NG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFE 259 (342)
T ss_pred hhhcCCCCeEEEeCCCch-HH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 22 33 4568866 44 445543 3334788999999 899999876 447899999998644 6676655
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
..++-|.+++.+++.++.++++.++ ..+.+.+|.|. + .+.++++.+++.+...+.+.
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHH
Confidence 5556677999999999999999985 45777777773 3 45667888887766665544
No 138
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.35 E-value=1.2e-10 Score=104.34 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChh-hHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+++|++++.+...... +...|+++| |||+ ..+.+.++++.+|+.|+.+ ..|+|..+.+.++.+... +
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~ 90 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-C 90 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-c
Confidence 38999999988765432 334677776 4664 4466789999999999985 458999999999998875 8
Q ss_pred CeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 196 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 196 ~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
|.+.+++.+. ++.|.++. +.+.+.+++.++.+.+.|+. +.+.+|.|++++.+++..+++++++++ ++.+.+.+|
T Consensus 91 D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpy 167 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPF 167 (213)
T ss_pred CEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecC
Confidence 9999999999 88898885 46789999999999999976 566777788889999999999999995 678888888
Q ss_pred eecCC---------CCCCCCCCCCHHHHHHHHHHHHH
Q 016605 273 LAVKG---------TPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 273 ~P~~g---------T~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
.|... .++.+.++++.+++.++..+++.
T Consensus 168 h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 168 HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 88542 24556677788777666666654
No 139
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.33 E-value=3.8e-10 Score=108.33 Aligned_cols=193 Identities=16% Similarity=0.254 Sum_probs=132.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCChhhHHHHHHHHHHHhh---
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G--~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~--- 170 (386)
..+|+++|.||.... .+. .+.++.+||++.+..+...| ++.|++.|- |||+...++.+.++.+++
T Consensus 107 qvGC~~~C~FC~tg~---~g~--~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGm-----GEPLln~~v~~~i~~l~~~~~ 176 (347)
T PRK14453 107 QCGCGFGCRFCATGS---IGL--KRNLTADEITDQLLYFYLNGHRLDSISFMGM-----GEALANPELFDALKILTDPNL 176 (347)
T ss_pred CCCcCCCCCCCCCCC---CCC--cccCCHHHHHHHHHHHHhcCCCcceEEEeec-----CCccCCHHHHHHHHHHhcccc
Confidence 568999999998763 222 33589999999998776554 777887763 456555668888877764
Q ss_pred cCcE---E-EEecCCCCHHHHHHHHHhc-cCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCe--eeEe
Q 016605 171 MGME---V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGIN--VCSG 238 (386)
Q Consensus 171 ~g~~---i-~~t~g~l~~e~l~~Lk~aG-~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~--v~~~ 238 (386)
.++. + ..|+|... .++.|.+.. -..+.+++.+. ++.++++.+. ...++.+++++... +.|.. +...
T Consensus 177 ~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~ 254 (347)
T PRK14453 177 FGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYI 254 (347)
T ss_pred cCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 2333 3 34678653 233333321 22345589998 8888887763 36788888776644 45655 5666
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCC--CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~--~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+|-|.+++.+++.+++++++.++. .+..|.+.+|+|.++.+ .+..+++.+++.+.....+..
T Consensus 255 LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-~~~~~ps~e~v~~f~~~L~~~ 318 (347)
T PRK14453 255 MLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-FKFQSSSAGQIKQFCSTLKSA 318 (347)
T ss_pred eECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-ccCCCCCHHHHHHHHHHHHHC
Confidence 777889999999999999998731 25688999999987643 235667788777666665543
No 140
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.27 E-value=4.3e-10 Score=107.38 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=137.6
Q ss_pred HHHHHhhcCCCeeEEEEeeeecCCCCCcC----CCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEe----
Q 016605 74 AQVHRHAHNFREVQQCTLLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG---- 145 (386)
Q Consensus 74 a~~~r~~~~g~~v~~~~~i~i~t~~C~~~----C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~---- 145 (386)
|.+.+++= .-.-+...-++. .++|+.. |+||.-... +.. ...++|.|+++++.+.+.|++.|-++
T Consensus 170 A~vv~qHP-~yp~~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~d 242 (560)
T COG1031 170 AEVVKQHP-NYPEYVICEIET-YRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGRQAD 242 (560)
T ss_pred chHHHhCC-CCcceEEEEEee-ccCCcccccCCCccccCcCc---CCc--ccCCHHHHHHHHHHHHHhccceeeeccccc
Confidence 34555552 211133334565 8899976 999986632 222 23699999999999999999887542
Q ss_pred ---cccCCCCCC--hhhHHHHHHHHHHHhhc--CcE-EEEe---cCCC------CHHHHHHHHHhc--cCeeecccCch-
Q 016605 146 ---AAWRDTIGR--KTNFNQILEYVKDIRDM--GME-VCCT---LGML------EKHQAIELKKAG--LTAYNHNLDTS- 205 (386)
Q Consensus 146 ---~g~~~~~ge--~~~~~~l~~~i~~ik~~--g~~-i~~t---~g~l------~~e~l~~Lk~aG--~~~v~i~le~~- 205 (386)
-+..+.+++ ..+-+.+-++.+.++.. ++. +++. ++.+ +++.++.+.++| =|...+++||+
T Consensus 243 ifsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaD 322 (560)
T COG1031 243 IFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESAD 322 (560)
T ss_pred eeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccC
Confidence 111222221 12345555555666543 333 2222 2222 456677777775 35678999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCC-------e---eeEeEEeec-CCCHHHHHHHHHHHhcCCC---CCCeEeeee
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGI-------N---VCSGGIIGL-GEAEEDRVGLLHTLATLPT---HPESVPINA 271 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-------~---v~~~~i~Gl-get~ed~~~~l~~l~~l~~---~~~~v~~~~ 271 (386)
+.+.++-+-..+.++++++++.+.+.|- + -++++++|+ |||.+.+.-..+|++++=. -+..|.+-.
T Consensus 323 p~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRq 402 (560)
T COG1031 323 PRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQ 402 (560)
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeee
Confidence 7887776667799999999999998653 2 478999999 9999999988888877521 156788999
Q ss_pred eeecCCCCCCCC
Q 016605 272 LLAVKGTPLQDQ 283 (386)
Q Consensus 272 f~P~~gT~l~~~ 283 (386)
.+++|||+++..
T Consensus 403 V~~fpgT~~~~~ 414 (560)
T COG1031 403 VVVFPGTPMWER 414 (560)
T ss_pred EeecCCCchhhh
Confidence 999999999754
No 141
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.25 E-value=2.2e-09 Score=102.51 Aligned_cols=190 Identities=15% Similarity=0.218 Sum_probs=133.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-----------------CCcEEEEecccCCCCCCh-hh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----------------GSTRFCMGAAWRDTIGRK-TN 157 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-----------------G~~~v~l~~g~~~~~ge~-~~ 157 (386)
.-||+..|.||+... .+.. +.++..||++.+..+.+. .++.|++.|- ||| .+
T Consensus 114 QvGC~mgC~FCaTG~---~G~~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----GEPL~N 183 (371)
T PRK14461 114 QAGCGMGCVFCATGT---LGLL--RNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----GEPFAN 183 (371)
T ss_pred cCCccCCCCcccCCC---CCcc--cCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----CCchhh
Confidence 459999999998653 2322 459999999988766431 2566776663 566 56
Q ss_pred HHHHHHHHHHHhh-c--Cc---EE-EEecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCC---CCCHHHHHHHH
Q 016605 158 FNQILEYVKDIRD-M--GM---EV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETL 225 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~--g~---~i-~~t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i 225 (386)
++.+++.++.+.+ . ++ .+ ..|.|. ...+++|.+-++ -.+.+|+-+. ++.++++.| ..+.++.++++
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~ 261 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAAT 261 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 7899999998863 2 33 13 334564 455666766543 3477899999 899999988 34889999998
Q ss_pred HHHHH-cCCe--eeEeEEeecCCCHHHHHHHHHHHhcCCCC---CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 016605 226 KHVRE-AGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 226 ~~a~~-~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
+...+ .|-. +...+|=|.+++.+|..++.++++.++.. .-+|.+.+|.|+++.++. +++.+.+.+...+.+
T Consensus 262 ~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L~ 338 (371)
T PRK14461 262 RDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRILT 338 (371)
T ss_pred HHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHHH
Confidence 87544 4544 45556668899999999999999987210 247899999999988764 356676665555544
Q ss_pred H
Q 016605 300 I 300 (386)
Q Consensus 300 ~ 300 (386)
.
T Consensus 339 ~ 339 (371)
T PRK14461 339 D 339 (371)
T ss_pred H
Confidence 3
No 142
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.25 E-value=9.5e-10 Score=104.86 Aligned_cols=188 Identities=14% Similarity=0.236 Sum_probs=131.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-Cc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~ 173 (386)
..+|+.+|.||.... .+. .+.++.+||++.+..+.+. .++.|++.|-|.|+ .+++.+++.++.+.+. ++
T Consensus 103 QvGC~~~C~FC~tg~---~g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl----~N~d~vl~ai~~l~~~~~i 173 (344)
T PRK14464 103 QVGCAVGCVFCMTGR---SGL--LRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPA----HNLDNVLEAIDLLGTEGGI 173 (344)
T ss_pred cCCcCCCCCcCcCCC---CCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeccCccc----CCHHHHHHHHHHhhchhcC
Confidence 779999999997653 222 2348999999998877663 57888888744333 4568888888877532 22
Q ss_pred --E-E-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCeee--EeEEe
Q 016605 174 --E-V-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGINVC--SGGII 241 (386)
Q Consensus 174 --~-i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~v~--~~~i~ 241 (386)
. + ..|.|. ....++|.+.++. .+.+++.+. ++.++++.|. .+.++.+++++... +.|-.+. ..++=
T Consensus 174 ~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~ 251 (344)
T PRK14464 174 GHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLE 251 (344)
T ss_pred CCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeC
Confidence 2 2 234553 4446777664432 456799999 8999998873 37899998887754 4565544 44455
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
|.+++.+++.++.++++.+ .-.+.+.+|.|++|..+. .++.+++.+.....+.
T Consensus 252 GVNDs~e~a~~L~~~l~~~---~~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 252 GVNDSDEEMDGIVRLLKGK---YAVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHR 304 (344)
T ss_pred CCCCCHHHHHHHHHHHhcc---ccccceecCCccCCCCcc---CCCHHHHHHHHHHHHH
Confidence 7899999999999999987 356788888998887653 4566666665555544
No 143
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=99.23 E-value=1.8e-10 Score=104.29 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=133.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~ 173 (386)
||.|-++|.||-..... ..++.+ ++++||+...-...+ .-+..+++.+|--- ..+...+.+.+.++.++ +.++
T Consensus 61 TN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~--~~DyTmE~mi~var~LRle~~f 135 (404)
T COG4277 61 TNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIK--NPDYTMEEMIEVARILRLEHKF 135 (404)
T ss_pred hhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheecccccc--CcchHHHHHHHHHHHHhhcccc
Confidence 99999999999875432 334444 899999987655544 45667777665421 22356788888888877 4434
Q ss_pred EEEEe----cCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc---------------CC
Q 016605 174 EVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA---------------GI 233 (386)
Q Consensus 174 ~i~~t----~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~---------------Gi 233 (386)
.-.++ +|. +++.+++.-.. +|++++++|.. ++.++.+.+.+++-++++.+.+++.. .+
T Consensus 136 ~GYIHlK~IPga-s~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 136 RGYIHLKIIPGA-SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred CcEEEEEecCCC-CHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 32222 342 45544444332 79999999999 88999999998888888877776651 01
Q ss_pred -e--eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 016605 234 -N--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 234 -~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a 296 (386)
+ -++.+|+|- +++++++...-..+-.-- ....|.+..|.|++++++.....++.....++++
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQ 279 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQ 279 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHH
Confidence 1 256799999 999999999888884332 3789999999999999876544444444455544
No 144
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.22 E-value=3.2e-09 Score=97.23 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=95.2
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~ 174 (386)
+.+||++|.||......... ......++.+++++.+..+...+...|+++| |||+..+++.++++.+++.|+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g~~ 102 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKGYR 102 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCCCC
Confidence 78999999999865322111 1123348999999998887666788888876 5788888999999999988888
Q ss_pred E-EEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 175 V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 175 i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
+ ..|||.+..+. +++ ++.+.++++.... ...+.++...++++.+.+ +..+.+.++++
T Consensus 103 v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 103 FALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 5 56799876652 333 5688888886521 112358888888888887 67788888876
No 145
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.20 E-value=4.4e-10 Score=103.30 Aligned_cols=163 Identities=22% Similarity=0.354 Sum_probs=115.7
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCC-----cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGV-----KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYV 165 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~-----~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i 165 (386)
+.+ |+.||.+|.||+.+... .+. ...+..+.++|.+++......|+ .++| |+| ...++..+++
T Consensus 32 lFv-TG~C~~~CfYCPvs~~r-~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTG------GdPl~~ieR~~~~i 100 (353)
T COG2108 32 LFV-TGLCNRSCFYCPVSDER-KGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITG------GDPLLEIERTVEYI 100 (353)
T ss_pred EEE-ecccCCCcccCcCCHHh-cCCcceeecccccCcHHHHHHHHHHhccccc---cccC------CChHHHHHHHHHHH
Confidence 445 99999999999987532 111 11234677888887776655554 3444 456 5568999999
Q ss_pred HHHhh-cC--cEE--EEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 166 KDIRD-MG--MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 166 ~~ik~-~g--~~i--~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
+.+|+ .| +.+ .+|.-..+++.++.|.+||+|-|-+.... -..+..+.+++.++.+++.|+.++.-+.
T Consensus 101 r~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~--------~~~~~~e~~i~~l~~A~~~g~dvG~EiP 172 (353)
T COG2108 101 RLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPR--------PGSKSSEKYIENLKIAKKYGMDVGVEIP 172 (353)
T ss_pred HHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCC--------ccccccHHHHHHHHHHHHhCccceeecC
Confidence 99984 33 333 33334579999999999999999875531 1134678889999999999998877665
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.-.|+ .+.+.+.++++.+.+ .+++.++.+--..
T Consensus 173 aipg~-e~~i~e~~~~~~~~~--~~FlNiNELE~sE 205 (353)
T COG2108 173 AIPGE-EEAILEFAKALDENG--LDFLNINELEFSE 205 (353)
T ss_pred CCcch-HHHHHHHHHHHHhcc--cceeeeeeeeecc
Confidence 43343 567889999999885 7889988876533
No 146
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.19 E-value=4.2e-10 Score=105.02 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=128.6
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--hhH-HHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNF-NQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~~~-~~l~~~i~ 166 (386)
-++.| ..+|-..|.||-..... .... ..+++++++.++...+.|+.+|.+.+-.+..+|.+ ... .-+..+++
T Consensus 189 eIi~i-ntgclgaCtyckTkhar-g~l~---sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 189 EIISI-NTGCLGACTYCKTKHAR-GLLA---SYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred EEEEe-ccccccccccccccccc-cccc---cCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHH
Confidence 35666 67999999999753211 1222 25899999999999999999998876444434432 112 22333344
Q ss_pred HHhhc-CcEEEEecCCCCHHHHHHHHHh----ccCe-eecccCch-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeE
Q 016605 167 DIRDM-GMEVCCTLGMLEKHQAIELKKA----GLTA-YNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCS 237 (386)
Q Consensus 167 ~ik~~-g~~i~~t~g~l~~e~l~~Lk~a----G~~~-v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~ 237 (386)
.+.+. ++.+-.||-..--|.+++++.. .+-. +++.+++. +.++-.+.+.....+.......+.+ -||.+.+
T Consensus 264 ~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IAT 343 (547)
T KOG4355|consen 264 VIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIAT 343 (547)
T ss_pred hcchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEee
Confidence 44322 2222233332223333333321 1111 33567888 8888888775433333334444555 4999999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 294 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~ 294 (386)
++|.|+ +||++|+.++++++++.. ..++.++.|.|.||||-+.....+..+..+.
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkR 399 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKR 399 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHH
Confidence 999999 999999999999999995 7789999999999999877666655554443
No 147
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.08 E-value=2.9e-09 Score=89.09 Aligned_cols=171 Identities=18% Similarity=0.264 Sum_probs=116.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHH-HcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~-~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
++....+-+||+.|.||...............++++|+.+.+.++. +.|.+.|-++|+ .|+.+ .+.++++|+-+
T Consensus 42 GiaTAD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~-EP~l~----~EHvlevIeLl 116 (228)
T COG5014 42 GIATADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGA-EPILG----REHVLEVIELL 116 (228)
T ss_pred ceeeccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCC-Ccccc----HHHHHHHHHhc
Confidence 3333347799999999976533223334566799999998886654 578888877764 34433 47888888876
Q ss_pred hhcCcEEEEecCC---CCHHHHHHHHHhccCeeecccCch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 169 RDMGMEVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 169 k~~g~~i~~t~g~---l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+..+ +.-|||. .++..+++|...--..|-+++.+. ++.+.+|.. +.-+...+++++.+++.|+.+...++++
T Consensus 117 ~~~tF-vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~ 195 (228)
T COG5014 117 VNNTF-VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYD 195 (228)
T ss_pred cCceE-EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhc
Confidence 44322 4456776 378888888653223466789999 899999974 2247888999999999999998888887
Q ss_pred cCCCHHHH-HHHHHHHhcCCCCCCeEe
Q 016605 243 LGEAEEDR-VGLLHTLATLPTHPESVP 268 (386)
Q Consensus 243 lget~ed~-~~~l~~l~~l~~~~~~v~ 268 (386)
+ ..||. .++...+.+.++-|..+-
T Consensus 196 f--~~Ed~~k~Lak~Lgehp~~P~~ie 220 (228)
T COG5014 196 F--FREDGLKELAKRLGEHPPIPCRIE 220 (228)
T ss_pred c--chhhhHHHHHHHhccCCCCCccee
Confidence 7 23333 345566666553333333
No 148
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.95 E-value=8.6e-08 Score=90.49 Aligned_cols=182 Identities=18% Similarity=0.308 Sum_probs=123.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cC------CcEEEEecccCCCCCCh-hhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G------~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ 167 (386)
--||+..|+||+.... +. .+.++..||++.+..+.+ .| ++.|++-|- ||| .+++.+...++.
T Consensus 108 QvGC~~~C~FCaTg~~---G~--~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl~N~dnV~~a~~i 177 (349)
T COG0820 108 QVGCPVGCTFCATGQG---GL--NRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPLLNLDNVVKALEI 177 (349)
T ss_pred CCCcCCCCCeeccccc---cc--eeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----CchhhhHHHHHHHHHh
Confidence 4489999999987642 22 235899999999887663 23 345666553 566 668888888888
Q ss_pred Hh-hcCcE-----E-EEecCCCCHHHHHHHHH-hccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCe
Q 016605 168 IR-DMGME-----V-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (386)
Q Consensus 168 ik-~~g~~-----i-~~t~g~l~~e~l~~Lk~-aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~ 234 (386)
+. +.|+. + ..|.| +. ..+.+|.+ ..=-.+.+|+.+. ++.++.+.| ..+.++.+++++.-.+ .|-.
T Consensus 178 ~~~~~G~~ls~R~iTvSTsG-i~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~r 255 (349)
T COG0820 178 INDDEGLGLSKRRITVSTSG-IV-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRR 255 (349)
T ss_pred hcCcccccccceEEEEecCC-Cc-hhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCce
Confidence 87 33332 2 33456 33 44555553 3223567899999 888888776 3378888988888554 4544
Q ss_pred ee--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 016605 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 295 (386)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~ 295 (386)
|+ ..++=|.++..++..++++++..+ +-+|.+.+|.|+|++.+.. ++.+++.+..
T Consensus 256 Vt~EY~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y~r---~~~~~i~~F~ 312 (349)
T COG0820 256 VTFEYVLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDYER---SSKERIRKFL 312 (349)
T ss_pred EEEEeeecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCccC---CcHHHHHHHH
Confidence 44 445557788899999999999887 4589999999999988533 3444444333
No 149
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.93 E-value=4.8e-07 Score=84.26 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEE--EEecCCCCHHHHHHHHHhcc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i--~~t~g~l~~e~l~~Lk~aG~ 195 (386)
..++.++..+.++.+.+.|++.+-++++..+... | ..+...+.++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3479999999999999999999988765432111 1 3356677777777543 443 33444 788999999999
Q ss_pred CeeecccCchHHHHhh--hCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecC--CCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 196 TAYNHNLDTSREFYSK--IITTR--SYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~--i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+.+.+ .|.. .+++. .++..+++++.+++.|+.+...++.-.+ .+.+++.+.++.+.++| ++.+.+
T Consensus 89 ~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l 165 (265)
T cd03174 89 DEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISL 165 (265)
T ss_pred CEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 99999887764 3333 33332 6889999999999999999988876667 99999999999999997 666653
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
. .| ....+++++.+++...+...++..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+
T Consensus 166 ~------Dt----~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~ 234 (265)
T cd03174 166 K------DT----VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAA 234 (265)
T ss_pred c------hh----cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCcc
Confidence 2 22 1235788899999999988886333221 1112233334567888999877 22210 2356789
Q ss_pred hhHHHHHHHHcCCC
Q 016605 346 FDADQLMFKVLGLT 359 (386)
Q Consensus 346 ~~~~~~~i~~~G~~ 359 (386)
.++++.+++..|+.
T Consensus 235 ~e~~~~~l~~~~~~ 248 (265)
T cd03174 235 TEDLVAALEGLGID 248 (265)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999843
No 150
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.88 E-value=6.1e-09 Score=87.19 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=63.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh---HHHHHHHHHHHhhcC
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDMG 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~---~~~l~~~i~~ik~~g 172 (386)
|++||++|.||...... .......++.+.+.+.++.+.+.++..|.+.| |||+. .+.+.++++.+++.+
T Consensus 12 t~~Cnl~C~yC~~~~~~--~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIW--KFKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp EC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHTT
T ss_pred cCcccccCcCcCCcccC--cccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHhC
Confidence 67899999999865432 11233346777777777887778888998887 46766 899999999999775
Q ss_pred c-E-EEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 173 M-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 173 ~-~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
. . +..++|....+...++....++.+.+++++.
T Consensus 84 ~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~ 118 (139)
T PF13353_consen 84 PKKIIILTNGYTLDELLDELIEELLDEIDVSVDGP 118 (139)
T ss_dssp -SEEEEEETT--HHHHHHHHHHHHHHTESEEEE--
T ss_pred CCCeEEEECCCchhHHHhHHHHhccCccEEEEEEe
Confidence 5 3 6778888777766654445555565555554
No 151
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.79 E-value=5.3e-07 Score=84.76 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=106.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHH-HHcCC--cEEEEecccCCCCCChhhHHHHHH-HHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKA-KEAGS--TRFCMGAAWRDTIGRKTNFNQILE-YVK 166 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~-~~~G~--~~v~l~~g~~~~~ge~~~~~~l~~-~i~ 166 (386)
+|. -.||.+.|.||+....... ........-.+.+.+.++.- .+.+. ..|.+++. ++++........+.. +++
T Consensus 33 inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~-TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 33 LNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSV-TDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred cCC-cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecC-CCCCCcchHHHHHHHHHHH
Confidence 444 5699999999986543211 11122222233377666543 32232 33455443 344432111222222 233
Q ss_pred HHhhcCcEEEE-ecCCC---CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 167 DIRDMGMEVCC-TLGML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 167 ~ik~~g~~i~~-t~g~l---~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
.+.+.+..+.+ |=..+ +-+.+..++.-+.-.|.+++-+. +++.+.+-|.. ++++++++++.+.++|+++...+-
T Consensus 111 i~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~ 190 (297)
T COG1533 111 ILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVA 190 (297)
T ss_pred HHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEe
Confidence 33345555432 32223 55666666676767788899888 56777777744 899999999999999999877665
Q ss_pred eec-CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 241 IGL-GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 241 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.-+ +.|++|+.+.+..+.+.+ +..+..
T Consensus 191 PIiP~~~d~e~e~~l~~~~~ag--~~~v~~ 218 (297)
T COG1533 191 PIIPGLNDEELERILEAAAEAG--ARVVVY 218 (297)
T ss_pred cccCCCChHHHHHHHHHHHHcC--CCeeEe
Confidence 444 778899999999998886 444433
No 152
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=98.77 E-value=1.8e-07 Score=88.34 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=129.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----------------
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---------------- 154 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge---------------- 154 (386)
.++| -++|++-|+||-.+-. .+..+ ..+.+.|+++++.+.+.|+++|.+.|-.-+.+.+
T Consensus 223 FvSi-MRGCdNMCtyCiVpft--rGreR--srpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVSI-MRGCDNMCTYCIVPFT--RGRER--SRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHHH-HhccccccceEEEecc--CCccc--CCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4566 7899999999965422 23333 3689999999999999999999876531111100
Q ss_pred -----------hhhHHHHHHHHHHHh-hcCcEE-EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCH
Q 016605 155 -----------KTNFNQILEYVKDIR-DMGMEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSY 218 (386)
Q Consensus 155 -----------~~~~~~l~~~i~~ik-~~g~~i-~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~ 218 (386)
.+.|..+++-+.... ++.+.. .-++....+|.++.+++.- +..+.+..++. .++++.++++.+.
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysr 377 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSR 377 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCCh
Confidence 022333444333332 222221 1124557889899887752 44455677888 7899999999999
Q ss_pred HHHHHHHHHHHHc--CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 219 DERLETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 219 ~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
+..++-.+.++.. |....+.+|.|. |||.+|-..++-++++.| .+.+..++|.-..+|..
T Consensus 378 eayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~a 440 (552)
T KOG2492|consen 378 EAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRA 440 (552)
T ss_pred HhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchh
Confidence 9999998888885 778899999999 999999999999999997 66676777765556653
No 153
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.66 E-value=5.5e-06 Score=76.68 Aligned_cols=200 Identities=15% Similarity=0.219 Sum_probs=130.9
Q ss_pred CCCCCc----CCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-C--Cc--EEEE-ecccCCCCCChhhHHHHHHHH
Q 016605 96 TGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G--ST--RFCM-GAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 96 t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G--~~--~v~l-~~g~~~~~ge~~~~~~l~~~i 165 (386)
|.||.. .|..|++..... . ...+.|++......+... . .. .+.+ ++|.... .+....+....++
T Consensus 54 T~GC~w~~~~gC~MCgY~~d~~----~-~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~Il 127 (358)
T COG1244 54 TRGCRWYREGGCYMCGYPADSA----G-EPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYIL 127 (358)
T ss_pred cCCcceeccCCcceeccccccC----C-CCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHHH
Confidence 899973 499998764321 1 227888998888776542 1 12 2444 3332211 1112234444455
Q ss_pred HHHhhcC-cE---EEEecCCCCHHHHHHHHHh--cc-CeeecccCch-HHHH-hhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 166 KDIRDMG-ME---VCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 166 ~~ik~~g-~~---i~~t~g~l~~e~l~~Lk~a--G~-~~v~i~le~~-~~~~-~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+.+.+.+ ++ +...+..+++|.++.+.+. |. ..|.+|+||+ +++. ..|+++.++++.+++++.++++|+.+.
T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred HHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCcee
Confidence 5555432 33 3445677899999999987 53 3578999999 8777 568889999999999999999999998
Q ss_pred EeEEeec-----CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHHHHHHHHHHHHhCCC
Q 016605 237 SGGIIGL-----GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 237 ~~~i~Gl-----get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
+-+++=+ .+..+|....+..+.. ..+.+++++-....||-++ ...||=.+-+.+++.-++...|.
T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~---~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKP---GTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred EEEEecccccChHHHHHHHHHHHHHhcc---CCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 8887644 2233444444443333 3789999998888898643 23445556666677767766664
No 154
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.61 E-value=9e-07 Score=84.71 Aligned_cols=202 Identities=16% Similarity=0.174 Sum_probs=142.9
Q ss_pred CCCCCcC---CCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCc-----EEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST-----RFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~---C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~-----~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
..-|... |.||+..... ......++..|.+.... ++|.. .+...++ +.+..+.++.+.+++
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~----~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~-----~d~~c~p~le~~~~r 102 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNE----LDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGN-----GDTFCYPDLEPRGRR 102 (414)
T ss_pred CCcCCCccccccceeeEEec----ccCCCCCHhHhhccccc--ccccccccccceeecCC-----CCcccCcchhhhhhH
Confidence 4456555 9999765421 11123566677765542 23322 1222221 344667888888888
Q ss_pred HhhcC----cEEEEe--cCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 168 IRDMG----MEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 168 ik~~g----~~i~~t--~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
++..+ +.+..+ +|..+.+..+.+.++|++-+++++.+. +++++++.+.+..++.++.+++..+.++.+.+.++
T Consensus 103 ~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iV 182 (414)
T COG1625 103 ARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIV 182 (414)
T ss_pred HHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEE
Confidence 87654 333333 555678888889999999999999999 99999999999999999999999999999999888
Q ss_pred eecCCC-HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCcc-eeec
Q 016605 241 IGLGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAM-VRLS 310 (386)
Q Consensus 241 ~Glget-~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~--~~~~s~~e~~~~~a~~R~~lp~~~-i~i~ 310 (386)
+-.|-| -+++.++++.+.+++ +..+.+..+.|..-|.+.. .++++++++..+-.+.|.+..... +++.
T Consensus 183 l~PGvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 183 LCPGVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVT 254 (414)
T ss_pred EcCCcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEe
Confidence 867776 799999999999997 6667776677888676543 355677777777666666554433 4443
No 155
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.60 E-value=3.3e-06 Score=76.94 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=129.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
.+.+ .+||++|-||+....+..+ .....+++++.+......+.|++.+-++||. || .....+++.++.+..
T Consensus 122 TVFF--sgCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~-Pt----p~lp~Ile~l~~~~~ 192 (335)
T COG1313 122 TVFF--SGCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGD-PT----PHLPFILEALRYASE 192 (335)
T ss_pred eEEe--cCcceEEEEecCccccccC--CCeEecHHHHHHHHHHHHHhcCcceeecCCC-CC----CchHHHHHHHHHHhc
Confidence 4555 5999999999887543222 3345899999999999999999999998863 22 356788888888765
Q ss_pred cCcE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcC--CeeeEeEEeecCC
Q 016605 171 MGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAG--INVCSGGIIGLGE 245 (386)
Q Consensus 171 ~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~G--i~v~~~~i~Glge 245 (386)
. ++ +.-+|+..++|.++.|... +|.+.-++.-. ++--.+..+.. -|+-+.+++..+.+.+ +-+.--++.|+
T Consensus 193 ~-iPvvwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPgh-- 268 (335)
T COG1313 193 N-IPVVWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGH-- 268 (335)
T ss_pred C-CCEEEecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCc--
Confidence 4 55 5667888999999999643 55555567666 55555555433 4677778888877763 44444445554
Q ss_pred CHHH-HHHHHHHHhcCCCCCCeEee---eeeeecC-CCCCCC-CCCCCHHHHHHHHHHHHHh
Q 016605 246 AEED-RVGLLHTLATLPTHPESVPI---NALLAVK-GTPLQD-QKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 246 t~ed-~~~~l~~l~~l~~~~~~v~~---~~f~P~~-gT~l~~-~~~~s~~e~~~~~a~~R~~ 301 (386)
.++ -...++|+.+.- ...+.+ .+|.|.- ...+.+ ...++.+|+.+.+..++.+
T Consensus 269 -lecCTkpI~~wiae~~--g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 269 -LECCTKPILRWIAENL--GNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred -hhhccHHHHHHHHHhC--CCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 233 466778887763 234444 3455532 122211 2457889988888877754
No 156
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.42 E-value=3.9e-06 Score=70.79 Aligned_cols=95 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i 175 (386)
..+||.+|.||...... .......++.+++.+.++.... .+..|.++| || ...+.+.++++.+|+.|+.+
T Consensus 22 l~GCnlrC~~C~n~~~~--~~~~g~~lt~eel~~~I~~~~~-~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESW--HLSEGTKLTPEYLTKTLDKYRS-LISCVLFLG------GE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred eCCCCCCCCCCCChHHc--CCCCCcCCCHHHHHHHHHHhCC-CCCEEEEec------hh-cCHHHHHHHHHHHHHCCCCE
Confidence 56999999999876432 1111234899999999887553 356787776 45 56788999999999888886
Q ss_pred EEecCCCCHHHHHHHHHhccCeeecc
Q 016605 176 CCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 176 ~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+..|...++..+.+.+. +|.+..+
T Consensus 92 ~l~Tg~~~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 92 CLYTGLEPKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred EEECCCCCHHHHHHHHHh-CCEEEEC
Confidence 553344444555555433 5555543
No 157
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.9e-05 Score=74.48 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=122.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
++.. |..|+..|.||.-...... .... ++.+++.+.+..+++. -+.+|.++||+ +....+..++++++-+++|.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~~--~~~~-~~~~~~~~al~YIa~hPeI~eVllSGGD-PL~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVGQ--DNQG-FNKEEWDKALDYIAAHPEIREVLLSGGD-PLSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEe-cCcccceeeeccccccccc--cccc-CCHHHHHHHHHHHHcCchhheEEecCCC-ccccCHHHHHHHHHHHhcCC
Confidence 3444 9999999999975533211 1112 5888888888887764 47788777764 44444555556666555554
Q ss_pred hc-CcEE-----EEecCCCCHHHHHHHHHhccCe-eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee-e-EeEE
Q 016605 170 DM-GMEV-----CCTLGMLEKHQAIELKKAGLTA-YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV-C-SGGI 240 (386)
Q Consensus 170 ~~-g~~i-----~~t~g~l~~e~l~~Lk~aG~~~-v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v-~-~~~i 240 (386)
.. .+.+ .+.+.-++++..+.|++.+... +...+.... .--.+..++++.++++|+.+ + +.++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~---------Eit~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPN---------EITPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChh---------hcCHHHHHHHHHHHHcCceeecchhee
Confidence 22 1222 2334557888888888754322 222222221 11345678999999999984 3 3455
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
=|.+++.+-+.++.+.+...+ +.-..++..-+.+|+. .-..+.++-.+++...|-.++.
T Consensus 260 rGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~---hfr~~i~~~~~i~~~lr~~~SG 318 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAA---HFRVPIAEGLQIVEELRGRTSG 318 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCcc---ceeccHHHHHHHHHHHHHhCCC
Confidence 588999999999999999886 4334444444455654 2245778888888877765543
No 158
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.39 E-value=8.6e-07 Score=72.08 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=45.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChhh---HHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~~---~~~l~~~i~~ik~ 170 (386)
|.+||++|.||...... .......++.+++.+.++.+...+. ..|.++| |||+. .+.+.++++.+++
T Consensus 5 t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~~~ 76 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSW--SPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYLKE 76 (119)
T ss_dssp -S--S---TTTS-TTTS--ST-GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTSTT
T ss_pred cCCcCCCCccCCcCccC--CCccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHHHh
Confidence 88999999999875322 1123345789999999987777765 4577776 45653 3789999999987
Q ss_pred cC--cEE-EEecCCCC
Q 016605 171 MG--MEV-CCTLGMLE 183 (386)
Q Consensus 171 ~g--~~i-~~t~g~l~ 183 (386)
.+ +.+ ..|||.+.
T Consensus 77 ~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 77 RGPEIKIRIETNGTLP 92 (119)
T ss_dssp -----EEEEEE-STTH
T ss_pred hCCCceEEEEeCCeec
Confidence 76 664 56788765
No 159
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.36 E-value=8.4e-06 Score=78.61 Aligned_cols=144 Identities=18% Similarity=0.146 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCC---CCHHHHHHHHHhc
Q 016605 121 LMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGM---LEKHQAIELKKAG 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~---l~~e~l~~Lk~aG 194 (386)
.-+.|+|.+.++.++... +....++. ++|||+..++|.++++.+++.|+. + ..|||. .+++.++.|++||
T Consensus 90 Ept~eqi~~Ml~~lk~e~p~~~~aIq~----tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag 165 (475)
T COG1964 90 EPTLEQIREMLRNLKKEHPVGANAVQF----TGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAG 165 (475)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceeEe----cCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcC
Confidence 478999999999988753 22333332 236888999999999999998875 4 345665 4799999999999
Q ss_pred cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
++.+.++.|+. ++.+.++ .-++-.++++++++|+. +...-.+--|.++.++.+++++.... ++.+.-..|
T Consensus 166 ~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n---~dvVrgVnf 237 (475)
T COG1964 166 VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNN---IDVVRGVNF 237 (475)
T ss_pred CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhc---cccccccce
Confidence 99999999999 7776665 23333489999999986 33222221277889999999999765 444444445
Q ss_pred eecC
Q 016605 273 LAVK 276 (386)
Q Consensus 273 ~P~~ 276 (386)
.|+.
T Consensus 238 QPVs 241 (475)
T COG1964 238 QPVS 241 (475)
T ss_pred EEEE
Confidence 5543
No 160
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=98.35 E-value=0.00028 Score=67.82 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccc-----CCCCCCh--hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~-----~~~~ge~--~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.++.+++.+.++.+.+.|+..+-++.+. ....|.+ ...+++.++.+.++...+.+...+|..+.+.++...++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~ 99 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDA 99 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHC
Confidence 3899999999999999999988775211 1111211 23455555555444333334555677778889999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+.... ...+...+.++.+++.|+.+...++..+.-+++.+.+.++.+.+.| ++.+.+
T Consensus 100 gvd~iri~~~~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i---- 162 (333)
T TIGR03217 100 GARTVRVATHC-----------TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI---- 162 (333)
T ss_pred CCCEEEEEecc-----------chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE----
Confidence 99998875421 2235677899999999999988888877788999999999999986 554422
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccc--cChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVR--FSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~--~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.+|- ....++++.+++...|..++ +..+.+- +..+ +.-.....++.+||+.+ +.|=. ..+.+.+.+
T Consensus 163 --~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H-~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G-~~aGN~~~E 234 (333)
T TIGR03217 163 --VDSA----GAMLPDDVRDRVRALKAVLKPETQVGFH-AHHNLSLAVANSIAAIEAGATRIDASLRGLG-AGAGNAPLE 234 (333)
T ss_pred --ccCC----CCCCHHHHHHHHHHHHHhCCCCceEEEE-eCCCCchHHHHHHHHHHhCCCEEEeeccccc-ccccCccHH
Confidence 1332 23578888899988888775 3222221 1222 22233466888999987 22210 125667888
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
..+.++++.|+.+
T Consensus 235 ~lv~~l~~~g~~t 247 (333)
T TIGR03217 235 VFVAVLDRLGWNT 247 (333)
T ss_pred HHHHHHHhcCCCC
Confidence 8888898888753
No 161
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.31 E-value=4.4e-05 Score=71.06 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcCC--cEE-EEecccCCCCCChhhHHHHHHHHHH-------------Hh--------hcCcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGS--TRF-CMGAAWRDTIGRKTNFNQILEYVKD-------------IR--------DMGMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~--~~v-~l~~g~~~~~ge~~~~~~l~~~i~~-------------ik--------~~g~~i~~ 177 (386)
-+.++....+++++.+|. +.| +++.|++.........+++..-+.. ++ -.|+.+.+
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIET 229 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIET 229 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeec
Confidence 355677777888888874 233 2233334433322333333332221 11 11444555
Q ss_pred ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC-CHHHHHHHH
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE-AEEDRVGLL 254 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge-t~ed~~~~l 254 (386)
.+.......+..|-.+|+.++.+++++. +++-..-+++|+...+-+++..++++|+++.+++|.-+ +- -+.|+..+.
T Consensus 230 RPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~ 309 (554)
T KOG2535|consen 230 RPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFK 309 (554)
T ss_pred CcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHH
Confidence 5666778889999999999999999999 88888888899999999999999999999999999877 32 345666666
Q ss_pred HHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHHHHHHHHHHHHhCCC
Q 016605 255 HTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++...=...++.+.+++-..+.||-+. .....++..+..++|..-.+.|.
T Consensus 310 E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 310 EYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 666544334677788877777788653 23557888888888866666665
No 162
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=98.29 E-value=8.6e-05 Score=67.98 Aligned_cols=219 Identities=15% Similarity=0.204 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHH-HHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~-l~~Lk~aG~~~v~i 200 (386)
++.++..+.++.+.+.|++.+-++. +. ..+..++.+.++.+......+...+.....+-+. ++.+++.|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~---~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF---PF-ASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH---CT-SSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc---cc-cCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 7899999999999999999987762 11 1244566666666655553333334433322233 56667899999988
Q ss_pred ccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 201 NLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 201 ~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
.+...+. ...+++.+ ...+...+.++.+++.|+.+..++.....-+++++.+.++.+.+++ ++.+.+ + +
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l----~--D 158 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYL----A--D 158 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEE----E--E
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEe----e--C
Confidence 7666542 23333321 1356667788889999999988887766778999999999999986 655533 2 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHHHH
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~~i 353 (386)
|- ...++.++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.|- =..+++.+.++.+.++
T Consensus 159 t~----G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~Gl-G~~~Gn~~le~lv~~L 233 (237)
T PF00682_consen 159 TV----GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGL-GERAGNAPLEELVAAL 233 (237)
T ss_dssp TT----S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGG-SSTTSB-BHHHHHHHH
T ss_pred cc----CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccC-CCCCCCccHHHHHHHH
Confidence 21 234788899999999999997433332 1112222233467889999987 2221 0235667899999999
Q ss_pred HHcC
Q 016605 354 KVLG 357 (386)
Q Consensus 354 ~~~G 357 (386)
+..|
T Consensus 234 ~~~g 237 (237)
T PF00682_consen 234 ERMG 237 (237)
T ss_dssp HHT-
T ss_pred hhcC
Confidence 8877
No 163
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=98.23 E-value=0.0011 Score=63.84 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCCh--hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~-----~~~ge~--~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.++.+++.+.++.+.+.|++.+-++.+.. ...|.+ ...+.+..+.+..++..+.....+|.-+.+.++...+.
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~ 100 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDA 100 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHc
Confidence 38999999999999999999887752210 001211 12232222222222222233345666678889999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+.... ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 101 gvd~iri~~~~-----------~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i---- 163 (337)
T PRK08195 101 GVRVVRVATHC-----------TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV---- 163 (337)
T ss_pred CCCEEEEEEec-----------chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe----
Confidence 99998775311 1235678899999999999999888877778999999999999986 555422
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCcceeecCcccccC--hhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSAGRVRFS--MPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~l-p~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.+|- ....++++.+++...+..+ |+..+.+- +..+++ -.....++.+||+.+ +.|=. ..+.+...+
T Consensus 164 --~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H-~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG-~~aGN~~tE 235 (337)
T PRK08195 164 --VDSA----GALLPEDVRDRVRALRAALKPDTQVGFH-GHNNLGLGVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLE 235 (337)
T ss_pred --CCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEE-eCCCcchHHHHHHHHHHhCCCEEEecChhhc-ccccCccHH
Confidence 2332 2357888889998888877 44333221 122222 233466888999976 22200 135667888
Q ss_pred HHHHHHHHcCCC
Q 016605 348 ADQLMFKVLGLT 359 (386)
Q Consensus 348 ~~~~~i~~~G~~ 359 (386)
+.+.++++.|+.
T Consensus 236 ~lv~~L~~~g~~ 247 (337)
T PRK08195 236 VLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHhcCCC
Confidence 888888888874
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.22 E-value=0.00068 Score=62.96 Aligned_cols=217 Identities=14% Similarity=0.175 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++..+.++.+.+.|++.+-++. |..+ +.. .+.++.+.+. +..+. .....+.+.++...++|++.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~~~----~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMG-EEE----REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-HHH----HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCEE
Confidence 48999999999999999999887642 2222 122 2344445432 33321 223246778889999999999
Q ss_pred ecccCch-HHHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTS-REFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~-~~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-.. ....++++.+. ..+...+.++.+++.|+.+..+++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l------ 158 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF------ 158 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe------
Confidence 9877655 33444554322 355666888999999999988888776678999999999999886 554322
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ....++++.+++...+..+| ..+.+. ....++.-.....++.+||+.+ +.|=. ..+++...++.+.
T Consensus 159 ~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G-~~aGN~~tE~lv~ 232 (259)
T cd07939 159 ADTV----GILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG-ERAGNAALEEVVM 232 (259)
T ss_pred CCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-ccccCcCHHHHHH
Confidence 2332 23567888888888887666 222221 1112222233466888999877 22211 2367789999999
Q ss_pred HHHHc-CCCc
Q 016605 352 MFKVL-GLTP 360 (386)
Q Consensus 352 ~i~~~-G~~p 360 (386)
+++.. |+.+
T Consensus 233 ~l~~~~g~~~ 242 (259)
T cd07939 233 ALKHLYGRDT 242 (259)
T ss_pred HHHHhcCCCC
Confidence 99997 8753
No 165
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=98.20 E-value=0.0006 Score=66.86 Aligned_cols=218 Identities=14% Similarity=0.175 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-++ .|..+ +.-.+.++.+.+.+... .+..+....+.++...++|++.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~-----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAG---FPAVS-----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEe---CCCcC-----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 4899999999999999999988664 22222 22244555555444332 122233457789999999999999
Q ss_pred cccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 200 HNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+.+.+.+ ....+++.+. .++...+.++.+++.|+.+..++..+...+.+.+.+.++.+.+.| ++.+.+ +
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l------~ 165 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF------C 165 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE------e
Confidence 9887773 4445554322 355566688899999999888877766678899999999999886 555332 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~~ 352 (386)
+|- ...++.++.+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.++++..
T Consensus 166 DT~----G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-eraGNa~lE~vv~~ 239 (378)
T PRK11858 166 DTV----GILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG-ERAGNAALEEVVMA 239 (378)
T ss_pred ccC----CCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecccc-ccccCccHHHHHHH
Confidence 442 2356788888888777655 32222211 111222223456788999987 33311 23567888888888
Q ss_pred HH-HcCCCc
Q 016605 353 FK-VLGLTP 360 (386)
Q Consensus 353 i~-~~G~~p 360 (386)
++ ..|+..
T Consensus 240 L~~~~g~~~ 248 (378)
T PRK11858 240 LKYLYGIDL 248 (378)
T ss_pred HHHHhCCCC
Confidence 87 577654
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=98.18 E-value=0.0008 Score=65.62 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=142.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. +..+ +.-.+.++.+.+.+.. +. .......+.++...++|++.+
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~v~-~~~r~~~~di~~a~~~g~~~i 88 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF---PIAS-----EGEFEAIKKISQEGLNAEIC-SLARALKKDIDKAIDCGVDSI 88 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----hHHHHHHHHHHhcCCCcEEE-EEcccCHHHHHHHHHcCcCEE
Confidence 48999999999999999999887642 2222 2224566666544333 32 222346788999999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. .++...++++.+++.|+.+..++.-....+.+.+.+.++.+.+.| ++.+.+
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------ 160 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI------ 160 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE------
Confidence 88776663 3333444322 467777899999999999888776655667899999999998886 555433
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.++++.
T Consensus 161 ~DT~----G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv~ 234 (363)
T TIGR02090 161 ADTV----GVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVVM 234 (363)
T ss_pred eCCC----CccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHHH
Confidence 2332 23467788888887776554 222221 1111222223466888999877 22311 2356678888888
Q ss_pred HHHH-cCCCc
Q 016605 352 MFKV-LGLTP 360 (386)
Q Consensus 352 ~i~~-~G~~p 360 (386)
+++. .|+.+
T Consensus 235 ~L~~~~g~~~ 244 (363)
T TIGR02090 235 ALKYLYGVKT 244 (363)
T ss_pred HHHHhhCCCC
Confidence 8887 78754
No 167
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.14 E-value=3.3e-05 Score=75.49 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=93.3
Q ss_pred ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCH-HHHHHHHH
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLH 255 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~ 255 (386)
|.-.++++.++++.+.+++-+++|+.+. ++.+.++.+.....+.++.++++.++||.+.+.+++-.|-|+ +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 3344789999999999999999999999 999999988888999999999999999998888777555554 78999999
Q ss_pred HHhcCCC-CCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHH
Q 016605 256 TLATLPT-HPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATA 298 (386)
Q Consensus 256 ~l~~l~~-~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~ 298 (386)
.+.+++. ....+.-...+|..=|.+.. ..+.+.++..+++...
T Consensus 202 dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9988821 12234444567777676532 3566777766666543
No 168
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.11 E-value=0.0016 Score=60.43 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=138.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc--EEEEecCCCCHHHHHHHHHhccCe
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~--~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
..++.++.++.++.+.+.|++.+-++. |... +...+.++.+.+.+. .+ ......+.+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~-----~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS---PAAS-----PQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-----HHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 348999999999999999999887764 2222 333444444443222 23 222345678899999999999
Q ss_pred eecccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 198 YNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 198 v~i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+.+-+.+. ...+.+.+ ...+...+.++.+++.|+.+..++.-..+-+.+.+.++++.+.+++ ++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI----- 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 9887755532 22333322 2355567777999999999999888777777899999999999986 554322
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 350 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~ 350 (386)
++|- ...+++++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|= =..+++.+.++.+
T Consensus 161 -~Dt~----G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~Gl-GeraGn~~~e~~~ 233 (262)
T cd07948 161 -ADTV----GIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGI-GERNGITPLGGLI 233 (262)
T ss_pred -CCcC----CCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc-ccccCCccHHHHH
Confidence 2332 23567788888888887765 222221 1111222223466888999976 2221 0125667888888
Q ss_pred HHHHHcC
Q 016605 351 LMFKVLG 357 (386)
Q Consensus 351 ~~i~~~G 357 (386)
..++..+
T Consensus 234 ~~l~~~~ 240 (262)
T cd07948 234 ARMYTAD 240 (262)
T ss_pred HHHHhcc
Confidence 8887654
No 169
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=98.10 E-value=0.0021 Score=60.55 Aligned_cols=224 Identities=12% Similarity=0.053 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-+++-..+..- |.. .+-.+.++.+.+. +..+..-. .+.+-+++..++|++.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v~ 97 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWV-PQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEVA 97 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccc-ccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEEE
Confidence 489999999999999999998876532211101 111 1124555555432 33332211 257778888899999999
Q ss_pred cccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecC---C---CHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG---E---AEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glg---e---t~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+.+.+. ...+++.+ ...+...++++.+++.|+.+..++.+.++ + +.+.+.+.++.+.+.| ++.+.+
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l- 174 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL- 174 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe-
Confidence 88766532 33333322 13445667889999999988766665332 2 6788899999998887 554432
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
++|- ...++.++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.| + .|- .+
T Consensus 175 -----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 175 -----GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred -----cccc----CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 2332 234678888888888877775333221 1112222233466889999987 222 2 111 25
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++...++++.+++..|+..
T Consensus 246 GN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIET 264 (287)
T ss_pred ccccHHHHHHHHHhcCCCC
Confidence 6789999999999988753
No 170
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=98.10 E-value=0.002 Score=59.92 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCChhhHHHHHHHHHHHhh--cCcE--EEEecCCCCHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRD--MGME--VCCTLGMLEKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~-----~~~ge~~~~~~l~~~i~~ik~--~g~~--i~~t~g~l~~e~l~~Lk 191 (386)
.++.++..+.++.+.+.|++.+-++.... ...+.+ .. .-.+.++.+++ .+.+ ....++....+.++...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AH-TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CC-ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 38999999999999999999887752100 000000 00 11223333322 1333 34445666678899999
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++|++.+.+..-.. ..+...+.++.+++.|+.+..+++-...-+++.+.+.++.+.+.| ++.+.+
T Consensus 96 ~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 160 (263)
T cd07943 96 DLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV-- 160 (263)
T ss_pred HcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 99999988754222 234567899999999999888876655668899999999999986 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
++|- ....++++.+++...|..++...+.+. ..-.++.-.....++.+||+.+ +.|=. ..+++.+.+
T Consensus 161 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG-~~aGN~~~E 231 (263)
T cd07943 161 ----TDSA----GAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLE 231 (263)
T ss_pred ----cCCC----CCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccccc-CCcCCccHH
Confidence 3442 235788888888888887765222211 1111222223466788999987 22210 125678999
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
+...+++..|+.+
T Consensus 232 ~lv~~L~~~g~~~ 244 (263)
T cd07943 232 VLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999888764
No 171
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.07 E-value=4.4e-05 Score=65.10 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChh---hHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKT---NFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~---~~~~l~~~i~~ik~~ 171 (386)
..+||++|.||..+... .......++.+++.+.++.+.+.+ ...|.++|| ||+ .++.+.++++.+|+.
T Consensus 22 ~~gCnl~C~~C~n~~~~--~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGG------EPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETW--NFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGG------DPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCccccc--CCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeCh------hhCCCCCHHHHHHHHHHHHHh
Confidence 36899999999876432 111223488666666666666554 556777763 554 347899999999864
Q ss_pred -CcE-EEEecCCCCHHHHH
Q 016605 172 -GME-VCCTLGMLEKHQAI 188 (386)
Q Consensus 172 -g~~-i~~t~g~l~~e~l~ 188 (386)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66788877666553
No 172
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=98.07 E-value=0.0014 Score=63.98 Aligned_cols=217 Identities=14% Similarity=0.203 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. |..+ +.-.+.++.+.+.+ ..+ +.......+.++...++|++.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~i-~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMG-----EEERAVIRAIVALGLPARL-MAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHcCCCcEE-EEEcCCCHHHHHHHHcCCcCEE
Confidence 48999999999999999999887642 2222 22234455554332 233 2233456888999999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+..++..+...+.+.+.+.++.+.+.| ++.+. .
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l 161 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------F 161 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------E
Confidence 98776653 3444554332 345556889999999999888777766667889999999998886 55432 3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.++++.
T Consensus 162 ~DT~----G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiG-eraGN~~lE~lv~ 235 (365)
T TIGR02660 162 ADTV----GILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG-ERAGNAALEEVAM 235 (365)
T ss_pred cccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccc-cccccCCHHHHHH
Confidence 3442 23577888888877776553 222221 1111222223466889999987 33211 2356788888888
Q ss_pred HH-HHcCCCc
Q 016605 352 MF-KVLGLTP 360 (386)
Q Consensus 352 ~i-~~~G~~p 360 (386)
.+ ...|..+
T Consensus 236 ~L~~~~g~~~ 245 (365)
T TIGR02660 236 ALKRLLGRDT 245 (365)
T ss_pred HHHHhcCCCC
Confidence 88 6678754
No 173
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=98.03 E-value=0.0021 Score=60.18 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.|+-++.++.+.+.|++.+-++....+... |. +.+.-+.++.+.. .+..+..-. ...+.+++..++|++.+.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEVA 91 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEEE
Confidence 489999999999999999999877643222211 11 1111133444432 234432222 357778999999999988
Q ss_pred cccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecC------CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+-+.+ -...+++.. ...+...+.++.+++.|+.+..++.+-++ -+.+.+.+.++.+.++| ++.+.+
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l- 168 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEISL- 168 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE-
Confidence 8776663 333444433 24577778899999999998777665442 25677888888888886 544332
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC---Ccc--ccC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG---EKL--LTT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g---~~~--~t~ 341 (386)
++|- ...++.++.+++...+..+|+..+.+. ..-.++.......++.+||+.+ +.| -.+ ..+
T Consensus 169 -----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~era 239 (274)
T cd07938 169 -----GDTI----GVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGAT 239 (274)
T ss_pred -----CCCC----CccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCcc
Confidence 2332 235678888888888877776433322 1112222233467889999987 222 111 236
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++.+.++.+.+++..|+.+
T Consensus 240 GN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 240 GNVATEDLVYMLEGMGIET 258 (274)
T ss_pred CCcCHHHHHHHHHhcCCCC
Confidence 7789999999999888753
No 174
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.02 E-value=5e-05 Score=64.73 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChh---hHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~---~~~~l~~~i~~ik~ 170 (386)
..+||++|.||........ .....++.+.+.+.++.+...+. ..|.++|| ||+ ..+.+.++++++++
T Consensus 23 ~~GCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGG------EPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRL--NSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGG------DPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred cCCCCCcCcCCCChhhccC--CCCcccCHHHHHHHHHHHHHhCCCCCcEEEECC------CccchhhHHHHHHHHHHHHH
Confidence 4799999999987642111 11122454444444444444433 46777664 453 45778888888875
Q ss_pred c--CcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 171 M--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 171 ~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
. +..+.+++|...++.... .+.-++.+.+-+|+
T Consensus 95 ~~~~~~i~~~tGy~~eel~~~-~~~~l~~~DvlvDG 129 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDELNAA-QRQVVDLIDVLVDG 129 (154)
T ss_pred HCCCCCEEEecCCCHHHHHHH-HHHHHhhCCEEEec
Confidence 3 456788899875554322 22224444454555
No 175
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=98.02 E-value=0.003 Score=60.84 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.|+-++.++.+.+.|++.+-.+....+.. -| ...+-.+.++.+++ .+..+..-. .+.+.+++..++|++.+.
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~-vP-qmad~~ev~~~i~~~~~~~~~~l~--~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKW-VP-QLADAKDVMAAVRNLEGARFPVLT--PNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCccc-cc-ccccHHHHHHHHHhccCCceeEEc--CCHHHHHHHHHcCcCEEE
Confidence 48999999999999999999887653221110 01 11122233333432 123321111 378889999999999999
Q ss_pred cccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE--eec-C---CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGI--IGL-G---EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i--~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+-+.+. ...+++.+ ..++...+.++.+++.|+.+..++. +|. . -+.+.+.+.++.+.+.| ++.|.+
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l- 216 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL- 216 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe-
Confidence 88855543 22233322 1344555688999999999876664 442 1 25677888888888886 555432
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
++|- ....+.++.+++...+..+|...+.+- ..-.++.-.....++.+||+.+ +.| + .|- .+
T Consensus 217 -----~DT~----G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~gra 287 (347)
T PLN02746 217 -----GDTI----GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGAS 287 (347)
T ss_pred -----cCCc----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCC
Confidence 2332 234677888888877777775323221 1112222233466889999987 222 2 111 35
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++...++++.+++..|+..
T Consensus 288 GN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 288 GNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 6788999999999998753
No 176
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=98.00 E-value=0.0032 Score=58.69 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--------hhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--------TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--------~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk 191 (386)
.++.++..+.++.+.+.|++.+-++-.. .++. ...+.+..+.+..+ +..+......+..+.+.++...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRS---SPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCC---CCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHh
Confidence 3899999999999999999988665211 1110 01233333333332 2223334455556778888888
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+.|++.+.+.+ +...+++..+.++.+++.|+.+..+++...+-+.+.+.+.++.+.+.| ++.+.+
T Consensus 93 ~~gv~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l-- 157 (266)
T cd07944 93 GSVVDMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI-- 157 (266)
T ss_pred cCCcCEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE--
Confidence 99999887754 234788899999999999999999988877888999999999999886 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-cceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
++|- ...+++++.+++...+..+++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. ..+++.+.
T Consensus 158 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G-~~aGN~~~ 228 (266)
T cd07944 158 ----VDSF----GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG-RGAGNLPT 228 (266)
T ss_pred ----ecCC----CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC-CCcCcHHH
Confidence 2332 235788888999888877764 333221 1112222233456788999876 22210 12566788
Q ss_pred hHHHHHHHHc
Q 016605 347 DADQLMFKVL 356 (386)
Q Consensus 347 ~~~~~~i~~~ 356 (386)
++.+.+++..
T Consensus 229 E~~v~~l~~~ 238 (266)
T cd07944 229 ELLLDYLNNK 238 (266)
T ss_pred HHHHHHHHHh
Confidence 8888888876
No 177
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.95 E-value=0.0037 Score=58.40 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhc----
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG---- 194 (386)
.++.++.++.++.+.+.|++.+-++.. ..+ |..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~-~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFP---AAS-PGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC---CCC-HHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 489999999999999999998877531 111 2223 445555432 33332111 12366677778888
Q ss_pred cCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 195 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 195 ~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++.+.+.+-..+ ....+++.+ ..++...+.++.+++.|+.+..+.+.+..-+++.+.+.++.+.++| ++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l-- 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI-- 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 898887664442 333444432 2467777899999999999988888776678899999999999986 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--cceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~--~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
++|- ...+++++.+++...|..+|+ ..+.+. ....++.-.....++.+||+.+ +.|=. ..+++..
T Consensus 163 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~ 233 (268)
T cd07940 163 ----PDTV----GYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAA 233 (268)
T ss_pred ----CCCC----CCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-ccccccc
Confidence 2332 235788888999988888875 322221 1111222223356788999877 22210 2356788
Q ss_pred hhHHHHHHHHcC
Q 016605 346 FDADQLMFKVLG 357 (386)
Q Consensus 346 ~~~~~~~i~~~G 357 (386)
.++++.+++..|
T Consensus 234 tE~lv~~L~~~~ 245 (268)
T cd07940 234 LEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHHhcc
Confidence 999999999887
No 178
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6e-05 Score=67.68 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE
Q 016605 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~ 174 (386)
+.|||++|.||........ ....+..++.++|++.++... .+...|+++| |||...+.+.++++.+++.|+.
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~~ 101 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGFR 101 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCce
Confidence 6799999999986422111 112455689999998877642 2344677776 5676667899999999988888
Q ss_pred EEE-ecCCCCHH
Q 016605 175 VCC-TLGMLEKH 185 (386)
Q Consensus 175 i~~-t~g~l~~e 185 (386)
+.+ |+|.+...
T Consensus 102 ~~lETngti~~~ 113 (212)
T COG0602 102 IALETNGTIPVW 113 (212)
T ss_pred EEecCCCCcccc
Confidence 654 56765444
No 179
>PRK09389 (R)-citramalate synthase; Provisional
Probab=97.74 E-value=0.01 Score=60.16 Aligned_cols=217 Identities=14% Similarity=0.152 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. +..+ +..+ +.++.+.+.+ .+++. ......+.++...++|++.+
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~-~~d~----e~v~~i~~~~~~~~i~a-~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS---AITS-EGER----EAIKAVTDEGLNAEICS-FARAVKVDIDAALECDVDSV 90 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC---CcCC-HHHH----HHHHHHHhcCCCcEEEe-ecccCHHHHHHHHhCCcCEE
Confidence 48999999999999999999887643 2112 2233 3444454332 33322 11223667888999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+.....-+...+.+-+.+.++.+.+.| ++.+. .
T Consensus 91 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l 162 (488)
T PRK09389 91 HLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRIC------F 162 (488)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEE------E
Confidence 98887763 3333444322 456667788889999998887777655566788889999998886 55532 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+...+ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.+++..
T Consensus 163 ~DTv----G~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG-ERaGNa~lE~lv~ 236 (488)
T PRK09389 163 CDTV----GILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG-ERAGNASLEEVVM 236 (488)
T ss_pred ecCC----CCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc-ccccCccHHHHHH
Confidence 3442 23467777777776665443 222221 1111222223466889999987 33321 2356778888888
Q ss_pred HHHH-cCCCc
Q 016605 352 MFKV-LGLTP 360 (386)
Q Consensus 352 ~i~~-~G~~p 360 (386)
.++. .|..+
T Consensus 237 ~L~~~~g~~~ 246 (488)
T PRK09389 237 ALKHLYDVET 246 (488)
T ss_pred HHHhhcCCCC
Confidence 8876 36544
No 180
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.74 E-value=0.028 Score=52.56 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC---cEEE--E---ecCC--CCHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVC--C---TLGM--LEKHQAIEL 190 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g---~~i~--~---t~g~--l~~e~l~~L 190 (386)
.++.++..+.++.+.+.|++.+-++.+. . .|..++. ++.+.+.. ..+. . ..+. .++..++.+
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a 87 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPG---S-NPKDTEF----FARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQAL 87 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCc---C-CHHHHHH----HHHHHHcCCCCcEEEEEecccccCCCccchHHHHHH
Confidence 4899999999999999999998774321 1 1333333 34443322 2221 1 1222 234568888
Q ss_pred HHhccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
.++|++.+.+.+-+.+ ...+.++.+ ..++...+.++.+++.|+.+..+.+ -+...+.+.+.+.++.+.+.| +
T Consensus 88 ~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g--~ 165 (273)
T cd07941 88 LEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--A 165 (273)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--C
Confidence 9999999888766553 233444432 3577778889999999998877544 233346777788888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+. .++|- ...+++++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.|- =..
T Consensus 166 ~~i~------l~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~Gl-Ger 234 (273)
T cd07941 166 DWLV------LCDTN----GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGY-GER 234 (273)
T ss_pred CEEE------EecCC----CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccc-ccc
Confidence 5432 22332 235778888888888888886433321 1112222233466888999987 2221 023
Q ss_pred CCCCChhHHHHHHH-HcCCC
Q 016605 341 TPNNDFDADQLMFK-VLGLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~-~~G~~ 359 (386)
+++.+.+++...++ ..|+.
T Consensus 235 aGn~~~e~~~~~L~~~~~~~ 254 (273)
T cd07941 235 CGNANLCSIIPNLQLKMGYE 254 (273)
T ss_pred cccccHHHHHHHHHhccCCC
Confidence 56678888888887 56763
No 181
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.70 E-value=0.015 Score=54.52 Aligned_cols=213 Identities=13% Similarity=0.099 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cC------CCCHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 185 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g------~l~~e 185 (386)
.++.++.++.++.+.+.|+..+-++++.... .++ ..++.+..+.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3899999999999999999888776432100 121 22333333333222222222111 11 13577
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (386)
.++...++|++.|.+.. +..+.+...+.++.+++.|+.+...+.+ +..-+++.+.+.++.+.+.|
T Consensus 96 di~~~~~~g~~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-- 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFD-----------ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-- 162 (275)
T ss_pred HHHHHHHcCCCEEEEee-----------cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--
Confidence 88888899999988754 2234788889999999999987765543 33567889999999999986
Q ss_pred CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 264 ~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
++.+.+ .+|- ...+++++.+++...|..++ ..+.+- ..-.++.......++.+||+.+ +.|- =.
T Consensus 163 a~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~ 230 (275)
T cd07937 163 ADSICI------KDMA----GLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SG 230 (275)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cC
Confidence 555433 2332 23567888888888887766 222221 1112222233466788999987 2221 01
Q ss_pred cCCCCChhHHHHHHHHcCCC
Q 016605 340 TTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+++.+.++.+.+++..|+.
T Consensus 231 ~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 231 GTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred CcCChhHHHHHHHHHccCCC
Confidence 25678899999999988865
No 182
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.66 E-value=0.034 Score=52.19 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~-~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.++.++-++.++.+ .+.|++.+-++. +... |..++.+.++.+..... ++.+..-. .....++..+++|+
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s-~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g~ 88 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVAS---ARVS-EGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAGA 88 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecC---CCCC-HHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCCC
Confidence 48999999999996 567999887653 2111 33344444444432211 23332211 23556888889999
Q ss_pred CeeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEe-e--cCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 196 TAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGII-G--LGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 196 ~~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~-G--lget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+-+. .....+++++ ...+...+.++.+++.|+.+..++.- | ..-+.+.+.+.++.+.++| ++.+.+
T Consensus 89 ~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G--~~~i~l 166 (280)
T cd07945 89 KVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP--IKRIML 166 (280)
T ss_pred CEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 9999888666 3444455443 24667778889999999988777663 2 1346888899999998886 554332
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
++|- ...++.++.+++...+..+|+..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+
T Consensus 167 ------~DT~----G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN~~ 235 (280)
T cd07945 167 ------PDTL----GILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGNAP 235 (280)
T ss_pred ------cCCC----CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccCcc
Confidence 2332 2346778888888777777764333221 111222233466889999977 22211 2356788
Q ss_pred hhHHHHHHH-HcCCCc
Q 016605 346 FDADQLMFK-VLGLTP 360 (386)
Q Consensus 346 ~~~~~~~i~-~~G~~p 360 (386)
.++++.+++ ..|+..
T Consensus 236 ~E~~v~~L~~~~g~~t 251 (280)
T cd07945 236 LASVIAVLKDKLKVKT 251 (280)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 999999995 478753
No 183
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.65 E-value=0.014 Score=58.75 Aligned_cols=214 Identities=12% Similarity=0.099 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
++.++.+..++.+.+.|+..+-+.||.+.. .++ ..++.+..+-+.+++..+..... .|. +.+..
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~f 102 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRF 102 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHH
Confidence 899999999999999999999887664333 222 23444444444444333443332 222 23556
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++...++|++.+.+..- -.+.+....+++.++++|..+...+.| +.-.|.+.+.+.++.+.+.| +
T Consensus 103 v~~a~~~Gidi~RIfd~-----------lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G--a 169 (499)
T PRK12330 103 VEKSAENGMDVFRVFDA-----------LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG--A 169 (499)
T ss_pred HHHHHHcCCCEEEEEec-----------CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--C
Confidence 77777889998776431 233466677889999999877555544 55678999999999999987 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
+.+.+ ++|- ...++.+..+++...+..+| +..+.+. ..-.++.-.....++.+||+.+ +.|=..
T Consensus 170 d~I~I------kDta----Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~- 238 (499)
T PRK12330 170 DSICI------KDMA----ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSL- 238 (499)
T ss_pred CEEEe------CCCc----cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccc-
Confidence 55433 2332 23577888888888888775 4434332 1112222233466889999987 223111
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 016605 340 TTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~p 360 (386)
.+...+.++++.+++..|+..
T Consensus 239 ~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 239 GPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred cccchhHHHHHHHHHhcCCCC
Confidence 235578899999999888653
No 184
>PRK00915 2-isopropylmalate synthase; Validated
Probab=97.57 E-value=0.012 Score=60.14 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecCC-CCHHHHHHHHHhccCe
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGM-LEKHQAIELKKAGLTA 197 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g~-l~~e~l~~Lk~aG~~~ 197 (386)
.++.++.++.++.+.+.|++.+-++. |..+ +..++.+..+.+..+ +..++. .... ..+..++.++++|.++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s-~~d~~~v~~i~~~~~--~~~i~a~~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF---PASS-PGDFEAVKRIARTVK--NSTVCGLARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC---CCCC-hHHHHHHHHHHhhCC--CCEEEEEccCCHHHHHHHHHHhhcCCCCE
Confidence 48999999999999999999887643 2112 334444433322221 233322 1111 1223344445788888
Q ss_pred eecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 198 YNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 198 v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+..+...+..-+.+.+.+.++.+.+.| ++.+.
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~------ 167 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTIN------ 167 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEE------
Confidence 998877763 3444444322 345556888999999999887777666567788899999998886 54432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.++|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.+
T Consensus 168 l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlG-ERaGNa~lE 242 (513)
T PRK00915 168 IPDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAALE 242 (513)
T ss_pred EccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeeccc-ccccCccHH
Confidence 23443 234678888888888877764 2232211 111122223466888999987 33311 235667788
Q ss_pred HHHHHHHHc
Q 016605 348 ADQLMFKVL 356 (386)
Q Consensus 348 ~~~~~i~~~ 356 (386)
+++..++..
T Consensus 243 ~vv~~L~~~ 251 (513)
T PRK00915 243 EVVMALKTR 251 (513)
T ss_pred HHHHHHHhh
Confidence 877777654
No 185
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.54 E-value=0.013 Score=52.93 Aligned_cols=198 Identities=9% Similarity=-0.014 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.-.+.++++.+.+.|++.+++ +..+..- .+-..-.++.+.++ +...++++.-.- -.++.++.+.++|++.+.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FV-PNitfGp~~i~~i~--~~~~~DvHLMv~-~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFS-PFFTVGAIAIKQFP--THCFKDVHLMVR-DQFEVAKACVAAGADIVTL 97 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcC-CccccCHHHHHHhC--CCCCEEEEeccC-CHHHHHHHHHHhCCCEEEE
Confidence 34567788888888899998876 3322211 00001133344333 122333322111 2577899999999999999
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
..|+.. ...++++.+++.|+.+.+++.+..+...+.+...+.. ++.+-+....| |..
T Consensus 98 H~Ea~~-------------~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gfg- 154 (228)
T PRK08091 98 QVEQTH-------------DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RTG- 154 (228)
T ss_pred cccCcc-------------cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CCC-
Confidence 888631 2346778889999978888888777777777665543 35666666655 432
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.+.. ....+..+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|.. +-. ..+.++.++.++
T Consensus 155 -GQ~f--~~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGaD~~V~GSa-lF~-~~d~~~~i~~l~ 224 (228)
T PRK08091 155 -TKAP--SDLILDRVIQVENRLGNRRVEKLISIDGS---MTLELASYLKQHQIDWVVSGSA-LFS-QGELKTTLKEWK 224 (228)
T ss_pred -Cccc--cHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChh-hhC-CCCHHHHHHHHH
Confidence 2221 12233444444444433 22445443 3344445677899999988863 322 234555555544
No 186
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.49 E-value=0.027 Score=56.46 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEE--EEe--c--CC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCT--L--GM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i--~~t--~--g~------l~~e~ 186 (386)
.++.++.+..+..+.+.|+..+-+.||.+....-....+.-.+.++.+++. +..+ ... | |. +-+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 389999999999999999999988654321100000011223444444432 2232 111 1 22 12344
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++...++|++.+.+..-.. +.+...++++.+++.|..+...+-+ +...+.+.+.+.++.+.+.| +
T Consensus 101 v~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G--a 167 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALN-----------DIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG--V 167 (467)
T ss_pred HHHHHHCCcCEEEEEEeCC-----------HHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 6777888999888754222 2455678889999999987755544 33457888899999998886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.......++.+||+.+ +.+=.- .
T Consensus 168 d~I~i------~Dt~----G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~-g 235 (467)
T PRK14041 168 DSICI------KDMA----GLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSM-G 235 (467)
T ss_pred CEEEE------CCcc----CCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCC-C
Confidence 54433 2332 23567888888888887665 233332 1112222233466889999987 222111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 236 agN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 236 TSQPPFESMYYAFRENGKET 255 (467)
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 34788999999999887653
No 187
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.49 E-value=0.042 Score=54.95 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~----ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
.++.++.++.++.+.+.|+..+-+.||.+... ..+..++.+..+-+.++...+..... .|. +.++.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 38999999999999999999998865532211 11123333333222222222221121 232 34677
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-..+ .....++++.+++.|+.+...+.+ +.-.+.+-+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G--a 168 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALND-----------VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG--A 168 (448)
T ss_pred HHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--C
Confidence 78888999998887543221 124567889999999886655444 33457788888998898886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.......++.+||+.+ +.+=. ..
T Consensus 169 d~I~i------~Dt~----G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg-~g 236 (448)
T PRK12331 169 DSICI------KDMA----GILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFA-GG 236 (448)
T ss_pred CEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccC-CC
Confidence 55433 2332 23567788888888877665 233332 1112233333466889999987 22210 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 237 aGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 237 TSQPATESMVAALQDLGYDT 256 (448)
T ss_pred cCCHhHHHHHHHHHhcCCCC
Confidence 66788999999999888753
No 188
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=97.37 E-value=0.067 Score=53.49 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
++.++++..+..+.+.|+..+-+.||.+.. ..+ ..++++..+-+.+++..+..... .|. +.+..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 889999999999999999988887664332 222 23455555444454444443222 122 22344
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (386)
++..++.|++.+-+. +. -...+....+++.+++.|..+...+.+-. ..|.+-+.+.++.+.+.| +
T Consensus 111 v~~a~~~Gidi~Rif--------d~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--a 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIF--------DA---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--A 177 (468)
T ss_pred HHHHHHCCCCEEEEc--------cc---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--C
Confidence 777778899887662 11 23677778899999999998665555422 457777888888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...+.. ++..+.+. ....++.......++.+||+.+ +.+=.. .
T Consensus 178 d~I~I------kDta----G~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~-g 245 (468)
T PRK12581 178 DSICI------KDMA----GILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE-G 245 (468)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCC-C
Confidence 55433 2332 235677778888777763 33333332 1112222333466889999987 221101 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 246 agN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 246 TSQPATESMYLALKEAGYDI 265 (468)
T ss_pred cCChhHHHHHHHHHhcCCCC
Confidence 45788899999999888753
No 189
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.30 E-value=0.089 Score=54.50 Aligned_cols=213 Identities=13% Similarity=0.107 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e 185 (386)
.++.++.+..+..+.+.|+..+-+.||.+.. .++ ..++.+..+.+.+.+..+..... .|. ..++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3899999999999999999999886653322 232 23344444333333333333332 122 2244
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (386)
.++...++|++.+.+.. .+ .+.+....+++.+++.|..+...+-| ....|.+.+.+.++.+.+.|
T Consensus 102 ~v~~a~~~Gid~~rifd-~l----------nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-- 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-AM----------NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-- 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-eC----------CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--
Confidence 57778888999988752 22 23467778999999999976544433 44567888999999998886
Q ss_pred CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 264 ~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
++.+.+ .+|- ....+.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. .
T Consensus 169 ad~i~i------~Dt~----G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG-~ 236 (593)
T PRK14040 169 VDSLCI------KDMA----GLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS-M 236 (593)
T ss_pred CCEEEE------CCCC----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEecccccc-c
Confidence 554433 2332 23567888888887776553 223322 1112222233466889999987 22210 1
Q ss_pred cCCCCChhHHHHHHHHcCCC
Q 016605 340 TTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+.+.+.++++..++..|+.
T Consensus 237 ~~Gn~~le~vv~~L~~~~~~ 256 (593)
T PRK14040 237 TYGHSATETLVATLEGTERD 256 (593)
T ss_pred cccchhHHHHHHHHHhcCCC
Confidence 25668889999999887765
No 190
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.24 E-value=0.089 Score=54.43 Aligned_cols=215 Identities=10% Similarity=0.051 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE--EEEe--c--CC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~--i~~t--~--g~------l~~e~ 186 (386)
.++.++.++.+..+.+.|+..+-+.||.+....-+...+.-.+.++.+++. +.. .+.. | |. +.++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 389999999999999999999988655332210011112234444444431 223 2221 1 22 24566
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-. .+.+....+++.+++.|+.+...+.+.. -.+.+.+.+.++.+.+.| +
T Consensus 97 v~~a~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--a 163 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDAL-----------NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--V 163 (582)
T ss_pred HHHHHHCCCCEEEEEEec-----------CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 788889999988774322 1235677889999999998776654433 357889999999999886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. ..
T Consensus 164 d~I~i------~Dt~----G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG-~~ 231 (582)
T TIGR01108 164 DSICI------KDMA----GILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMS-GG 231 (582)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEecccccc-cc
Confidence 54322 3332 23567788888888887665 223322 1111222233466889999987 22210 13
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 232 tGn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 232 TSHPPTETMVAALRGTGYDT 251 (582)
T ss_pred ccChhHHHHHHHHHhcCCCc
Confidence 56788999999999887653
No 191
>PRK14057 epimerase; Provisional
Probab=97.24 E-value=0.044 Score=50.27 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCC----CCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRD----TIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~----~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.-.+.++++.+.+.|++.+++ +..+.. +.| ..+++.++. ...++++.-.- -.+..++.+.++|++
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-----p~~i~~i~~--~~p~DvHLMV~-~P~~~i~~~~~aGad 100 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG-----PWAVGQLPQ--TFIKDVHLMVA-DQWTAAQACVKAGAH 100 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC-----HHHHHHhcc--CCCeeEEeeeC-CHHHHHHHHHHhCCC
Confidence 45567788888888889998876 332221 112 233333332 22233322111 257789999999999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-------eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.|.+..|+.. ...++++.+++.|++ +.+++.+..+...+.+...+.. ++.|-+
T Consensus 101 ~It~H~Ea~~-------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLv 160 (254)
T PRK14057 101 CITLQAEGDI-------------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQL 160 (254)
T ss_pred EEEEeecccc-------------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEE
Confidence 9999888631 124667788888874 5567777666666666655542 456666
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCC--C
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP--N 343 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~--~ 343 (386)
....| |.. .+.. ....++.+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|..+-... .
T Consensus 161 MtV~P--Gfg--GQ~F--i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGad~~V~GSalF~~~d~~ 231 (254)
T PRK14057 161 LAVNP--GYG--SKMR--SSDLHERVAQLLCLLGDKREGKIIVIDGS---LTQDQLPSLIAQGIDRVVSGSALFRDDRLV 231 (254)
T ss_pred EEECC--CCC--chhc--cHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChHhhCCCCHH
Confidence 66655 432 2111 12223334444444432 23445443 344444567789999998886332211 1
Q ss_pred CChhHHHHHHHHcCCCcCCC
Q 016605 344 NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 344 ~~~~~~~~~i~~~G~~p~~~ 363 (386)
...+....++..+|=+...+
T Consensus 232 ~~i~~l~~~~~~~~~~~~~~ 251 (254)
T PRK14057 232 ENTRSWRAMFKVAGDTTFLP 251 (254)
T ss_pred HHHHHHHHHHhhcCCcccCC
Confidence 23444455666666544433
No 192
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.19 E-value=0.1 Score=54.19 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEe----cC------CCCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCT----LG------MLEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t----~g------~l~~e~ 186 (386)
.++.++.+..+..+.+.|+..+-+.||......-....++-++.++.+++. .+..... .| .+.++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 388999999999999999999888655321110001113344555555432 2222222 12 234667
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-. .+.+...++++.+++.|..+..++.+ +.-.+.+.+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--a 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDAL-----------NDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--C 168 (592)
T ss_pred HHHHHHCCCCEEEEEEec-----------ChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 888889999988774322 22356678889999999987766655 32457889999999998886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ .+|- ....+.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.+=.- .
T Consensus 169 d~I~i------~Dt~----G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~-~ 236 (592)
T PRK09282 169 DSICI------KDMA----GLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF-G 236 (592)
T ss_pred CEEEE------CCcC----CCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC-C
Confidence 54432 2332 23567788888888887665 223332 1112222233466889999987 222111 2
Q ss_pred CCCCChhHHHHHHHHcCCC
Q 016605 341 TPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~ 359 (386)
+.+.+.+.++.+++..|+.
T Consensus 237 agn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 237 TSQPPTESMVAALKGTPYD 255 (592)
T ss_pred cCCHhHHHHHHHHHhCCCC
Confidence 3578889999999888765
No 193
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.18 E-value=0.12 Score=46.70 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.+.-.+.++++.+.+.|++.+++ +..++.- . ...+ ..+++.++.. ....++++.-.- -.+..++.+.++|++.+
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FV-P-N~tfg~~~i~~lr~~~~~~~~dvHLMv~-~P~~~i~~~~~~gad~I 89 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYV-P-NLTIGPMVCQALRKHGITAPIDVHLMVE-PVDRIVPDFADAGATTI 89 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccC-C-CcccCHHHHHHHHhhCCCCCEEEEeccC-CHHHHHHHHHHhCCCEE
Confidence 34557778888888889988876 3322221 0 0111 3344444433 222333322211 25778999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+. . ...++++.++++|++. ++.+..+...+.+...+. . ++.|-+....| |.
T Consensus 90 ~~H~Ea~----------~---~~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l~---~----vD~VlvMtV~P--Gf 145 (223)
T PRK08745 90 SFHPEAS----------R---HVHRTIQLIKSHGCQA--GLVLNPATPVDILDWVLP---E----LDLVLVMSVNP--GF 145 (223)
T ss_pred EEcccCc----------c---cHHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHHh---h----cCEEEEEEECC--CC
Confidence 9988863 1 1336778888999754 444444555555555543 2 45666666655 44
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp----~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.-+...+.. ++.++.+|.+.+ +..|.+.+| +..+.-.....+|||.++.|.. +.. ..++.+.++.++
T Consensus 146 ~GQ~fi~~~----l~KI~~l~~~~~~~~~~~~IeVDGG---I~~eti~~l~~aGaDi~V~GSa-iF~-~~d~~~~~~~lr 216 (223)
T PRK08745 146 GGQAFIPSA----LDKLRAIRKKIDALGKPIRLEIDGG---VKADNIGAIAAAGADTFVAGSA-IFN-APDYAQVIAQMR 216 (223)
T ss_pred CCccccHHH----HHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEChh-hhC-CCCHHHHHHHHH
Confidence 322222222 333344444432 223455543 3344445677899999988873 332 335777777776
Q ss_pred Hc
Q 016605 355 VL 356 (386)
Q Consensus 355 ~~ 356 (386)
+.
T Consensus 217 ~~ 218 (223)
T PRK08745 217 AA 218 (223)
T ss_pred HH
Confidence 54
No 194
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.12 E-value=0.13 Score=46.75 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHHhhcCcEE--EEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEV--CCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~ik~~g~~i--~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+.-.+.++++.+.. |++.+++ +..++.- ....+ ..+++.++......+++ .+.+ .+..++.+.++|++.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FV--PN~tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFV--PNLTLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccC--CCcccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 44566677777766 8888876 2222211 00111 23444444332223333 3332 5778999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+.. ....+.++.++++|++. ++.+..+...+.+...+.. ++.|-+....| |.
T Consensus 87 t~H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~~-------vD~VLvMsV~P--Gf 143 (229)
T PRK09722 87 TLHPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIHL-------LDKITVMTVDP--GF 143 (229)
T ss_pred EECccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHh-------cCEEEEEEEcC--CC
Confidence 99888641 12236778889999865 4444445555555555442 35666666655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.-+.. ..+.++.+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|...+-....+..+.+..++
T Consensus 144 ~GQ~f----i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 144 AGQPF----IPEMLDKIAELKALRERNGLEYLIEVDGS---CNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred cchhc----cHHHHHHHHHHHHHHHhcCCCeEEEEECC---CCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 32111 22334445555554433 23445543 334444567789999998885323322234556555555
Q ss_pred H
Q 016605 355 V 355 (386)
Q Consensus 355 ~ 355 (386)
+
T Consensus 217 ~ 217 (229)
T PRK09722 217 A 217 (229)
T ss_pred H
Confidence 4
No 195
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=97.09 E-value=0.17 Score=51.90 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc---CcEEEE-----ecCC--CCHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIEL 190 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~---g~~i~~-----t~g~--l~~e~l~~L 190 (386)
.++.++.++.++.+.+.|++.+-++.. ... +..+ +.++.+.+. +..++. ..+. .++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p---~as-~~d~----~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWP---GSN-PKDT----EFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCC---cCC-hhHH----HHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 489999999999999999998876431 111 2233 334444321 233221 1122 245678899
Q ss_pred HHhccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++|++.+.+.+-+.+ ....+++.+ ...+...++++.+++.|+.+..+.. -+.-.+.+-+.+.++.+.+.| +
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G--a 172 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--A 172 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--C
Confidence 9999999998877663 333444432 2466667888899999998776544 233345677788888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+. .++|- ....+.++.+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..
T Consensus 173 d~i~------l~DTv----G~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlG-ER 240 (524)
T PRK12344 173 DWVV------LCDTN----GGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYG-ER 240 (524)
T ss_pred CeEE------EccCC----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 5543 33553 3356778888887766555 32232211 111222223466888999987 33311 13
Q ss_pred CCCCChhHHHHHHH-HcCC
Q 016605 341 TPNNDFDADQLMFK-VLGL 358 (386)
Q Consensus 341 ~~~~~~~~~~~~i~-~~G~ 358 (386)
+++.+.++++..++ +.|+
T Consensus 241 aGNa~lE~lv~~L~~~~g~ 259 (524)
T PRK12344 241 CGNANLCSIIPNLQLKMGY 259 (524)
T ss_pred ccCcCHHHHHHHHHhccCC
Confidence 56678888775555 4675
No 196
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.08 E-value=0.17 Score=52.38 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-----CChhhHHHHHHHHHHHhhcCcEEEE----ecCC--CC----HHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCC----TLGM--LE----KHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-----ge~~~~~~l~~~i~~ik~~g~~i~~----t~g~--l~----~e~ 186 (386)
++.++++..+..+.+.|+..+-+.||.+... .+ ..++++..+-+.+++..+...+ -.|. .. +..
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7899999999999999999888877643311 11 2233333333333333444433 1233 22 346
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++..++.|+|.+-+. |+ -.+.+....+++.++++|..+...+.| ..-.|.+.+.+.++.+.+.| +
T Consensus 102 v~~a~~~Gidv~Rif-d~----------lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--a 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVF-DA----------LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--C 168 (596)
T ss_pred HHHHHHcCCCEEEEc-cc----------CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 667778899887662 11 234566678899999999987666544 33679999999999999987 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccc---cCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIF---TGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~---~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+++. ....++.......++.+||+.+- .|=. ..
T Consensus 169 d~I~I------kDta----G~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glG-g~ 236 (596)
T PRK14042 169 DSIAI------KDMA----GLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFS-GG 236 (596)
T ss_pred CEEEe------CCcc----cCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccccc-CC
Confidence 55433 2321 23567778888887776654 223322 11122222334568899999872 2210 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+++.++++.+++..|+..
T Consensus 237 tGn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 237 ASHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CCcHhHHHHHHHHHhcCCCC
Confidence 46678889999999888653
No 197
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.05 E-value=0.23 Score=50.89 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--e---cCC--CCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--T---LGM--LEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t---~g~--l~~e~l~~Lk~a 193 (386)
.++.++-++.++.+.+.|++.+-.+. |.. .|..++.+..+.+.-. .+.+++. . .+. ..+..++.++++
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~-s~~d~~~v~~i~~~~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~ 93 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGW---PGA-NPKDVQFFWQLKEMNF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKA 93 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCC-ChHHHHHHHHHHHhCC-CCcEEEEEeeecCCCCCCchHHHHHHHhcC
Confidence 48999999999999999999886632 211 2444444443332110 1233322 1 121 235678999999
Q ss_pred ccCeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 194 GLTAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 194 G~~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~~~v 267 (386)
|.+.+.+.+-+.+ ....+++... ..+...++++.+++.|..+..... -+.--+.+.+.+.++.+.+.| ++.+
T Consensus 94 ~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG--ad~i 171 (526)
T TIGR00977 94 ETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG--ADWL 171 (526)
T ss_pred CCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--CCeE
Confidence 9999998877763 3334444322 455556678899999998765333 444457888899999998886 5554
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCC
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 343 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~ 343 (386)
.+- +|- ....+.++.+++...+..+|...+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++
T Consensus 172 ~i~------DTv----G~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiG-ERaGN 240 (526)
T TIGR00977 172 VLC------DTN----GGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYG-ERCGN 240 (526)
T ss_pred EEe------cCC----CCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-CccCC
Confidence 332 442 2357788888888888777753233221 111222223466889999987 33310 12445
Q ss_pred CChhHHHHHHH-HcCC
Q 016605 344 NDFDADQLMFK-VLGL 358 (386)
Q Consensus 344 ~~~~~~~~~i~-~~G~ 358 (386)
.+.++....++ +.|+
T Consensus 241 a~Le~v~~~L~~~~g~ 256 (526)
T TIGR00977 241 ANLCSLIPNLQLKLGY 256 (526)
T ss_pred CcHHHHHHHHHhhcCC
Confidence 56666655444 3565
No 198
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=97.03 E-value=0.23 Score=50.40 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-----cCc-EEEEecCCCCHHHHHHHHHh-
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-----MGM-EVCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-----~g~-~i~~t~g~l~~e~l~~Lk~a- 193 (386)
.++.++-++.++.+.+.|++.+-++. |..+ +..++.+..+.+.... .++ ......+....+.++.-.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s-~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~ 177 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS-EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEAL 177 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhh
Confidence 48999999999999999999876643 2222 3333333332222211 111 11112222334444444444
Q ss_pred ---ccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCe
Q 016605 194 ---GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 266 (386)
Q Consensus 194 ---G~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 266 (386)
|.+++.+.+-+.+ ....+++.. ...+...++++.+++.|+. +..++-.+.--+.+.+.+.++.+.+.| ++.
T Consensus 178 ~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G--ad~ 255 (503)
T PLN03228 178 KYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG--ATS 255 (503)
T ss_pred cccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC--CCE
Confidence 7778888776663 333444432 2456667788899999985 444443333334566788888888886 554
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
+. .++|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||+.+ +.|-. .
T Consensus 256 I~------l~DTv----G~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiG-E 324 (503)
T PLN03228 256 VG------IADTV----GINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIG-E 324 (503)
T ss_pred EE------EecCC----CCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 32 23442 235677888888887776653 2222211 111222223466889999987 33311 1
Q ss_pred cCCCCChhHHHHHHHHcC
Q 016605 340 TTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G 357 (386)
.+++.+.++++.+++..|
T Consensus 325 RaGNa~lEevv~~L~~~~ 342 (503)
T PLN03228 325 RSGNASLEEVVMALKCRG 342 (503)
T ss_pred ccCCccHHHHHHHHHhcc
Confidence 356678888888887754
No 199
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=96.96 E-value=0.12 Score=52.42 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHH----HHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~----~Lk~aG~~ 196 (386)
.++.++-++.++.+.+.|++.+-.+. |..+ +..++.+..+.+..+ +..++.- ....++.++ .+++++.+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s-~~d~e~v~~i~~~~~--~~~i~al-~r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF---PVSS-PGDFEAVQRIARTVK--NPRVCGL-ARCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-HHHHHHHHHHHHhCC--CCEEEEE-cCCCHHhHHHHHHhccccCCC
Confidence 38999999999999999999886542 2122 334444433322222 2343321 122233344 34445778
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+|.+.+-+.+ ....+++.+. ..+...++++.+++.|..+..+...+..-+.+.+.+.++.+.+.| ++.+.
T Consensus 92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~----- 164 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN----- 164 (494)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE-----
Confidence 8888777663 3344444321 345555788899999998877777666667888999999998886 54332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc---ceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKA---MVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~---~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
.++|- ...++.++.+++...+..+|.. .+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.
T Consensus 165 -l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG-ERaGNa~l 238 (494)
T TIGR00973 165 -IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG-ERAGNAAL 238 (494)
T ss_pred -eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc-ccccCccH
Confidence 34553 2346788888888887777642 222211 111122223466888999987 33311 23566778
Q ss_pred hHHHHHHHH
Q 016605 347 DADQLMFKV 355 (386)
Q Consensus 347 ~~~~~~i~~ 355 (386)
+++...++.
T Consensus 239 e~vv~~L~~ 247 (494)
T TIGR00973 239 EEVVMALKV 247 (494)
T ss_pred HHHHHHHHH
Confidence 887777764
No 200
>PRK08005 epimerase; Validated
Probab=96.93 E-value=0.28 Score=43.95 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++-.+.++++++.+.|++.+++ +..++.- ....+ ..+++.++..-...++++.-. .-.+..++.+.++|++.+.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FV--PN~tfG~~~i~~l~~~t~~~~DvHLMv-~~P~~~i~~~~~~gad~It 86 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFI--NNITFGMKTIQAVAQQTRHPLSFHLMV-SSPQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcC--CccccCHHHHHHHHhcCCCCeEEEecc-CCHHHHHHHHHHhCCCEEE
Confidence 34567778888888899988876 3322221 00111 334444443322233332211 1257789999999999999
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..|+.+ ...+.++.+++.|++. ++-+..+...+.+...+.. ++.+-+..-.| |..
T Consensus 87 ~H~Ea~~-------------~~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~~-------vD~VlvMsV~P--Gf~ 142 (210)
T PRK08005 87 IHAESVQ-------------NPSEILADIRAIGAKA--GLALNPATPLLPYRYLALQ-------LDALMIMTSEP--DGR 142 (210)
T ss_pred EcccCcc-------------CHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHHh-------cCEEEEEEecC--CCc
Confidence 9888631 1236778888999865 4444445555665554432 45666666555 543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
-+.. ..+.++.+..+|.+.+...|.+.+| +..+.-.....+|||.++.|..
T Consensus 143 GQ~f----~~~~~~KI~~l~~~~~~~~I~VDGG---I~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 143 GQQF----IAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred ccee----cHHHHHHHHHHHHhcccCCEEEECC---CCHHHHHHHHHCCCCEEEEChH
Confidence 2211 2334455566666666544566553 3344445678899999988863
No 201
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.16 Score=44.06 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-eccc----CCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAW----RDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~----~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
+...+.++++++.+.|++-+++ +..+ +.|.|. -+.+.++.-... -+.+..-. .-.+..++.+.++|+
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~-----pvV~slR~~~~~~~ffD~HmMV-~~Peq~V~~~a~aga 88 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGP-----PVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGA 88 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccch-----HHHHHHHhccCCCcceeEEEee-cCHHHHHHHHHhcCc
Confidence 4566777888888999988765 2222 223342 233333332211 12222111 125778999999999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
+.+.+..|..+ .+.+.++.+++.|+.+++.+=. |...+++...+.. ++.+-+...-|
T Consensus 89 s~~tfH~E~~q-------------~~~~lv~~ir~~Gmk~G~alkP--gT~Ve~~~~~~~~-------~D~vLvMtVeP- 145 (224)
T KOG3111|consen 89 SLFTFHYEATQ-------------KPAELVEKIREKGMKVGLALKP--GTPVEDLEPLAEH-------VDMVLVMTVEP- 145 (224)
T ss_pred ceEEEEEeecc-------------CHHHHHHHHHHcCCeeeEEeCC--CCcHHHHHHhhcc-------ccEEEEEEecC-
Confidence 99998777642 1457778899999987776554 4455555554431 45666666555
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
| ++.+.. .+++...+...|.-+|+..|.+.+| +++..-..+..+|||.++.|..+..+ .+..+.+..|++
T Consensus 146 -G--FGGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a--~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 146 -G--FGGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGA--ADPSDVISLLRN 215 (224)
T ss_pred -C--Cchhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecC--CCHHHHHHHHHH
Confidence 3 222222 4667777888898999988888865 34444466778999999988755533 456677776665
No 202
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=96.64 E-value=0.42 Score=47.25 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEe-cC--CCCHHHHHHHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t-~g--~l~~e~l~~Lk~aG~~ 196 (386)
.++.++-++.++.+.+.|++.+-.+.. ..-+.-.+.++.+. ..+..+++. .+ ......++.+.++|++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p--------~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~ 91 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFP--------VASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVD 91 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCC--------cCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCC
Confidence 489999999999999999988765431 11123334444443 333311111 11 1345578999999999
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+.+-+.+.+ -...+++... ..+...++++.+++.|+.+.....-....+.+.+.+.++.+...| ++.+.
T Consensus 92 ~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~----- 164 (409)
T COG0119 92 RIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRIN----- 164 (409)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEE-----
Confidence 9998887773 3333443222 466677788999999988776555555677888899998888765 43433
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-cceeecCcccccC--hhHHHhhhhcCcccc
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSAGRVRFS--MPEQALCFLAGANSI 332 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~~g~~~~~--~~~~~~~l~~Gan~~ 332 (386)
.++|- ...++.++.+++...+..+|+ ..+.+.+ ...++ -.....++.+||+.+
T Consensus 165 -l~DTv----G~~~P~~~~~~i~~l~~~v~~~~~l~~H~-HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 165 -LPDTV----GVATPNEVADIIEALKANVPNKVILSVHC-HNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred -ECCCc----CccCHHHHHHHHHHHHHhCCCCCeEEEEe-cCCcchHHHHHHHHHHcCCcEE
Confidence 23443 335678888888888888874 4443322 11122 123467889999988
No 203
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.63 E-value=0.45 Score=42.29 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCH--HHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEK--HQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~--e~l~~Lk~aG~~~ 197 (386)
.++++.++.++.+ +.|++-+-++. ++..+.-.+.++.+++. +..+....-.++. ..++.+.++|.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 5789999999988 67776554432 23333445666666543 3333222111222 3689999999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..++. .....+.++.+++.|+.+...++ +..+..+++ ..+.+++ ++.+.++ |+
T Consensus 80 i~vh~~~~------------~~~~~~~i~~~~~~g~~~~~~~~-~~~t~~~~~----~~~~~~g--~d~v~~~-----pg 135 (206)
T TIGR03128 80 VTVLGVAD------------DATIKGAVKAAKKHGKEVQVDLI-NVKDKVKRA----KELKELG--ADYIGVH-----TG 135 (206)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEec-CCCChHHHH----HHHHHcC--CCEEEEc-----CC
Confidence 98765542 12234677788899987655322 122222333 3334554 6666552 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
+.-....+...+. +...+..++...+-+.+| + ..+.-...+.+||+.+..|..+.. ..++.+..+.++
T Consensus 136 ~~~~~~~~~~~~~----i~~l~~~~~~~~i~v~GG-I--~~~n~~~~~~~Ga~~v~vGsai~~--~~d~~~~~~~l~ 203 (206)
T TIGR03128 136 LDEQAKGQNPFED----LQTILKLVKEARVAVAGG-I--NLDTIPDVIKLGPDIVIVGGAITK--AADPAEAARQIR 203 (206)
T ss_pred cCcccCCCCCHHH----HHHHHHhcCCCcEEEECC-c--CHHHHHHHHHcCCCEEEEeehhcC--CCCHHHHHHHHH
Confidence 2211122223332 333334444433332332 2 333345667899999988764332 234555555554
No 204
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.57 E-value=0.13 Score=49.60 Aligned_cols=214 Identities=13% Similarity=0.128 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEE----ecCC------CCHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCC----TLGM------LEKHQA 187 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~----t~g~------l~~e~l 187 (386)
+..++.+-.++.+.+.|+..+-+.||-+...---.+-++=++.++++|+. .++... ..|. +.+..+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 77899999999999999988888776432100000113334445555532 122111 1122 234445
Q ss_pred HHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCCC
Q 016605 188 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 188 ~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 265 (386)
++..+.|+|.+-+ |+.++ +..+...+++.+++.|.++...+.|-. -.|.+-..+.++.+.+++ ++
T Consensus 105 ~ka~~nGidvfRi--------FDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 5556668776655 33333 233444677888999998777776655 789999999999999997 77
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCccccccCCc-cc-cCC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGEK-LL-TTP 342 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~~~g~~-~~-t~~ 342 (386)
+|.|--. .| ..++.+..+++..++..++- .+++.+ ..-++..-....++.+|++.+-+.-. +. .+.
T Consensus 172 SIciKDm---aG-------lltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gts 240 (472)
T COG5016 172 SICIKDM---AG-------LLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTS 240 (472)
T ss_pred EEEeecc---cc-------cCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCC
Confidence 7765431 12 24677888888888888872 333321 11233333456688999998832211 11 133
Q ss_pred CCChhHHHHHHHHcCCC
Q 016605 343 NNDFDADQLMFKVLGLT 359 (386)
Q Consensus 343 ~~~~~~~~~~i~~~G~~ 359 (386)
-+..+-+...++..||.
T Consensus 241 qP~tEtmv~aL~gt~yD 257 (472)
T COG5016 241 QPATETMVAALRGTGYD 257 (472)
T ss_pred CCcHHHHHHHhcCCCCC
Confidence 45566666666665553
No 205
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.56 E-value=0.56 Score=42.39 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.-.+.++++.+.+.|++.+++ +..++.- .+-..-..+++.++.. ....++++.-. .-.+..++.+.++|++.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fv-pn~tfg~~~i~~i~~~~~~~~~dvHLMv-~~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYV-PNLTFGAPICKALRDYGITAPIDVHLMV-KPVDRIIPDFAKAGASMIT 86 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccc-CccccCHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHHHHhCCCEEE
Confidence 34567778888888889988876 3322211 0001113444444443 12233332211 1257789999999999999
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+.+|+.+ ...+.++.+++.|++. ++.+..+...+.+...+. . ++.+-+....| |+.
T Consensus 87 ~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l~---~----~D~vlvMtV~P--Gfg 142 (220)
T PRK08883 87 FHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIMD---K----VDLILLMSVNP--GFG 142 (220)
T ss_pred EcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHHH---h----CCeEEEEEecC--CCC
Confidence 9888631 1336677888899864 444444545555554443 2 45666666555 554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
-+..-+.+.+ .+..+|.+.++ ..+.+.+ ++..+.-.....+||+.++.|..+ .. ..++.+.++.+++
T Consensus 143 Gq~fi~~~le----kI~~l~~~~~~~~~~~~I~vdG---GI~~eni~~l~~aGAd~vVvGSaI-f~-~~d~~~~i~~l~~ 213 (220)
T PRK08883 143 GQSFIPHTLD----KLRAVRKMIDESGRDIRLEIDG---GVKVDNIREIAEAGADMFVAGSAI-FG-QPDYKAVIDEMRA 213 (220)
T ss_pred CceecHhHHH----HHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEeHHH-hC-CCCHHHHHHHHHH
Confidence 3222222333 33444444332 1233333 233444456778999999888633 22 2345555555544
No 206
>PLN02321 2-isopropylmalate synthase
Probab=96.17 E-value=1.7 Score=45.46 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-c---C-cEEEEecCCCCHHHHHHHHHhc-
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---G-MEVCCTLGMLEKHQAIELKKAG- 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~---g-~~i~~t~g~l~~e~l~~Lk~aG- 194 (386)
.++.++-++.++.+.+.|++.|-.+. |..+ |..++.+..+.+.++. . + +...+..+....+.++.-.+++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~S-p~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~ 179 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGF---PIAS-PDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---cCCC-ccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhc
Confidence 48999999999999999999887643 2122 3345554444333321 1 1 1222223334566666666663
Q ss_pred -c--CeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 195 -L--TAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 195 -~--~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v 267 (386)
+ .++.+.+-+.+ -...+++.+. ..+...++++.+++.|.. +..+.-.+..-+.+.+.+.++.+.+.| ++.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~I 257 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATTL 257 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCEE
Confidence 3 24666655553 2333443221 345555677888889874 555555444456788888889888886 5543
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
. .++|- ....+.++.+++...+..+|. ..+.+.+ .-.++.--....++.+||..+ +.|-. ..
T Consensus 258 ~------L~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-ER 326 (632)
T PLN02321 258 N------IPDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-ER 326 (632)
T ss_pred E------ecccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 2 33443 234678888888888877764 2222211 111121122356889999987 33321 23
Q ss_pred CCCCChhHHHHHHHHcC
Q 016605 341 TPNNDFDADQLMFKVLG 357 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G 357 (386)
+++.+.++++.+++..|
T Consensus 327 aGNa~LEevv~~L~~~~ 343 (632)
T PLN02321 327 AGNASLEEVVMAIKCRG 343 (632)
T ss_pred ccCccHHHHHHHHHhcc
Confidence 66778888888887644
No 207
>PRK14847 hypothetical protein; Provisional
Probab=96.16 E-value=1.3 Score=42.46 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC-----cEEEEecCCCCHH----HHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG-----MEVCCTLGMLEKH----QAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g-----~~i~~t~g~l~~e----~l~~Lk 191 (386)
.++++|=++.++.+.+.|++.+-.+ .|..+ +.. .+.++.+.+.+ ..++.-+- ...+ .++.++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG---~Pa~s-~~e----~e~ir~I~~~~~~~~~~~i~~~~r-~~~~dId~a~e~~~ 120 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVA---FPSAS-QTD----FDFVRKLIDERRIPDDVTIEALTQ-SRPDLIARTFEALA 120 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEee---CCCCC-HHH----HHHHHHHHHhCCCCCCcEEEEEec-CcHHHHHHHHHHhC
Confidence 4899999999999999999988654 23323 223 44444443332 23332222 2233 344444
Q ss_pred HhccCeeecccCchHH-HHhhhCCCCCHH----HHHHHHHHHHHcCCe---eeEeEEeec-CC---CHHHHHHHHHHHhc
Q 016605 192 KAGLTAYNHNLDTSRE-FYSKIITTRSYD----ERLETLKHVREAGIN---VCSGGIIGL-GE---AEEDRVGLLHTLAT 259 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~-~~~~i~~~~s~~----~~l~~i~~a~~~Gi~---v~~~~i~Gl-ge---t~ed~~~~l~~l~~ 259 (386)
+++..+|++.+-+.+- ...+++ ++.+ ...++++.+++.|.. ....+-+|. .- ..+-+.+.++.+.+
T Consensus 121 ~~~~~~Vhi~~p~Sd~h~~~kl~--~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 121 GSPRAIVHLYNPIAPQWRRIVFG--MSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CCCCCEEEEEecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 4445668888877743 333443 3444 455677788888652 112345555 22 34555556665533
Q ss_pred C-CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeec-CcccccChhHHHhhhhcCcccc--
Q 016605 260 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLS-AGRVRFSMPEQALCFLAGANSI-- 332 (386)
Q Consensus 260 l-~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~-~g~~~~~~~~~~~~l~~Gan~~-- 332 (386)
. | ++..+...+. .+.|- ...++.++.+++...+..+++ ..+.+. ..-.++.-.....++.+||+.+
T Consensus 199 ~~g--a~r~~a~~i~-l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~ 271 (333)
T PRK14847 199 IWG--PTPQRKMIIN-LPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEG 271 (333)
T ss_pred HhC--CCccCCcEEE-eCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 3 4 3333333332 34443 234677777777766555542 222111 1112222233466889999987
Q ss_pred -ccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 333 -FTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 333 -~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+.|-. ..+++.+.++++..+...|...
T Consensus 272 tv~G~G-ERaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 272 CLFGNG-ERTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred eCCcCC-ccccchhHHHHHHHHHhcCCCC
Confidence 22221 1267788999999998887653
No 208
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.13 E-value=0.85 Score=41.42 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcC----cEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g----~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.++-.+.++++.+.+.|++.+++ ...++.. | ++..=.+.++.+++.+ +.+.+-. .-....++.+.++|+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fv---p-n~~~G~~~v~~lr~~~~~~~lDvHLm~-~~p~~~i~~~~~~Gad 90 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFV---P-NLSFGPPVVKSLRKHLPNTFLDCHLMV-SNPEKWVDDFAKAGAS 90 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccC---C-CcCcCHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHHcCCC
Confidence 45567788888888899988876 2222211 1 1111123444444332 3332221 1246678899999999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.+..|+.+ +...++++.+++.|..+...+. .....+++...+ + .+ .++.|-+... .|
T Consensus 91 ~itvH~ea~~------------~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l---~-~~-~vD~Vl~m~v--~p 149 (228)
T PTZ00170 91 QFTFHIEATE------------DDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLI---D-TD-LVDMVLVMTV--EP 149 (228)
T ss_pred EEEEeccCCc------------hHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHH---c-cc-hhhhHHhhhc--cc
Confidence 9998776531 1134677788889976654443 333455554332 1 11 1344444333 33
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
|..-.. .. ...+..+...|.+.+...+.+.+| +....-.....+|||.++.|. .++. ..++.+.++.|++
T Consensus 150 G~~gq~---~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGs-aI~~-a~d~~~~~~~i~~ 219 (228)
T PTZ00170 150 GFGGQS---FM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGS-SIFK-AKDRKQAIELLRE 219 (228)
T ss_pred CCCCcE---ec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEch-HHhC-CCCHHHHHHHHHH
Confidence 443211 11 222333444555666545555553 333444567789999998886 4443 3356666666654
No 209
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=1.1 Score=40.02 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+...+.++++.+.+.|.+-+++ +..++.- .+-..-..+++.++...+..+.+..-.- -.+..++.+.++|++.|++
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFV-PNiTfGp~~v~~l~~~t~~p~DvHLMV~-~p~~~i~~fa~agad~It~ 90 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFV-PNITFGPPVVKALRKITDLPLDVHLMVE-NPDRYIEAFAKAGADIITF 90 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcC-CCcccCHHHHHHHhhcCCCceEEEEecC-CHHHHHHHHHHhCCCEEEE
Confidence 34556677777888889988876 3332221 0111114555555553333333332211 2478899999999999999
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
..|..+ ...++++.+++.|.+.+.. +-.+...+.+...+.. ++.+-+....| |.-
T Consensus 91 H~E~~~-------------~~~r~i~~Ik~~G~kaGv~--lnP~Tp~~~i~~~l~~-------vD~VllMsVnP--Gfg- 145 (220)
T COG0036 91 HAEATE-------------HIHRTIQLIKELGVKAGLV--LNPATPLEALEPVLDD-------VDLVLLMSVNP--GFG- 145 (220)
T ss_pred EeccCc-------------CHHHHHHHHHHcCCeEEEE--ECCCCCHHHHHHHHhh-------CCEEEEEeECC--CCc-
Confidence 887422 1236677888888765543 3233333333333322 46777777766 322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---cceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPK---AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+.. ..+.+..+..+|.+.++ ..|.+.+| +..+....+..+|||.++.|.
T Consensus 146 -GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDGG---I~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 146 -GQKF--IPEVLEKIRELRAMIDERLDILIEVDGG---INLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred -cccc--CHHHHHHHHHHHHHhcccCCeEEEEeCC---cCHHHHHHHHHcCCCEEEEEE
Confidence 2222 23445556667777763 34555553 344555667779999998887
No 210
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=95.82 E-value=2 Score=44.48 Aligned_cols=228 Identities=15% Similarity=0.033 Sum_probs=124.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCC---CHHHHHHHHHhcc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGML---EKHQAIELKKAGL 195 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l---~~e~l~~Lk~aG~ 195 (386)
..++.++=++.++.+.+.|++.+-.+ .|... +..++.+..+++... ..+..++.-.-.. -+..++.+..++.
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~G---fp~~s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~ 118 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVG---FPSAS-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKR 118 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCC-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCC
Confidence 34899999999999999999988654 22222 334444444443311 0133332211111 1233444444444
Q ss_pred CeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe------eeEeEEeecC----CCHHHHHHHHHHHhcCCC
Q 016605 196 TAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN------VCSGGIIGLG----EAEEDRVGLLHTLATLPT 262 (386)
Q Consensus 196 ~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~------v~~~~i~Glg----et~ed~~~~l~~l~~l~~ 262 (386)
..|.+.+-+.+ -...+++.+. ..+...++++.+++.|.. +...+.|+.- -..+.+.++++.+.+.+.
T Consensus 119 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~ 198 (564)
T TIGR00970 119 ATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWA 198 (564)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCC
Confidence 46777776663 2333443221 344455566777887763 2224455432 246777888888888752
Q ss_pred C-CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---eeecC-cccccChhHHHhhhhcCcccc---cc
Q 016605 263 H-PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM---VRLSA-GRVRFSMPEQALCFLAGANSI---FT 334 (386)
Q Consensus 263 ~-~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~---i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~ 334 (386)
. ++.... +-.|.|- ...++.++.+++..++..+|+.. +.+-+ .-.++.-.....++.+||..+ +.
T Consensus 199 ~~~~~~~~---i~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~ 271 (564)
T TIGR00970 199 PTPERPII---FNLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLF 271 (564)
T ss_pred CccCCeeE---EEecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecC
Confidence 0 111111 1234553 34578888888888877776531 22211 111122222456889999987 32
Q ss_pred CCccccCCCCChhHHHHHHHHcCCC
Q 016605 335 GEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 335 g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
|-. ..+++.+.++++.+++..|..
T Consensus 272 G~G-ERaGNa~le~lv~~L~~~g~~ 295 (564)
T TIGR00970 272 GNG-ERTGNVDLVTLALNLYTQGVS 295 (564)
T ss_pred cCC-ccccCccHHHHHHHHHhcCCC
Confidence 221 126778889999989888754
No 211
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=95.79 E-value=1.7 Score=40.73 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G-----~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.++=++.++.+.+.| ++.+-+.+ .. +...+.+..+++.-.+ ...+... .....+-+++..++|++
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~-~~d~~~v~~~~~~~~~-~~~v~~~-~r~~~~die~A~~~g~~ 89 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YT-EKDREAVEACLDRGYK-FPEVTGW-IRANKEDLKLVKEMGLK 89 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cC-hHHHHHHHHHHHcCCC-CCEEEEE-ecCCHHHHHHHHHcCcC
Confidence 48999999999999999 98886632 11 2234444444331100 1234333 34567778899999999
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCH-H----HHHHHHHHHhcCCCCCC-e
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGL-GEAE-E----DRVGLLHTLATLPTHPE-S 266 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~-e----d~~~~l~~l~~l~~~~~-~ 266 (386)
.+.+.+-+.+ -...+++.+. ..+...+.++.+++.|+.+..++ -|. ..+. + -+.++++.+.+.| ++ .
T Consensus 90 ~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~ 166 (279)
T cd07947 90 ETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVK 166 (279)
T ss_pred EEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEE
Confidence 9998776653 3444555432 46667778888999998876655 222 1112 1 2333444444454 43 2
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh--CCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV--MPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~--lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+--=+ --.+|+.. ...+++..+++...+.. +|...+.+. ..-.++.-.....++.+||+.+ +.|-. ..
T Consensus 167 i~l~DTv-G~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlG-e~ 242 (279)
T cd07947 167 IRLCDTL-GYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIG-ER 242 (279)
T ss_pred EEeccCC-CcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 3221100 00223210 11246666777766655 343222221 1111222223466888999987 22211 23
Q ss_pred CCCCChhHHHHHHHHc-CCC
Q 016605 341 TPNNDFDADQLMFKVL-GLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~-G~~ 359 (386)
+++...+++..+++.. |+.
T Consensus 243 aGN~~tE~lv~~l~~~~g~~ 262 (279)
T cd07947 243 TGNCPLEAMVIEYAQLKGNF 262 (279)
T ss_pred ccchhHHHHHHHHHHhcCCC
Confidence 6678899999999998 864
No 212
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.72 E-value=2.2 Score=47.94 Aligned_cols=213 Identities=9% Similarity=0.027 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----------cCCCC
Q 016605 121 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----------LGMLE 183 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----------~g~l~ 183 (386)
.++.++.+..+..+.+. |+..+-+.||.+.. ..+ ..++.+..+-+.+.+..+...+. ++...
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e-~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKE-DPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 38899999999999999 99888877653221 111 12333333333333333333222 12344
Q ss_pred HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee------c--CCCHHHHHHHHH
Q 016605 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLH 255 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G------l--get~ed~~~~l~ 255 (386)
.+.++...++|++.+.+. ++. ...+....+++.++++|......+.+- . ..+.+-+.+.++
T Consensus 630 ~~~i~~a~~~Gid~~rif-d~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIF-DSL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred HHHHHHHHHcCCCEEEEe-ccC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 666888889999998874 222 224556678889999997544444442 1 247788888888
Q ss_pred HHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc--
Q 016605 256 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI-- 332 (386)
Q Consensus 256 ~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~-- 332 (386)
.+.++| ++.+.+ ++|- ...++.+..+++...|..++ ..+++.+ .-.++.-.....++.+||+.+
T Consensus 699 ~l~~~G--a~~i~i------kDt~----G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 699 ELEKAG--AHILAI------KDMA----GLLKPAAAYELVSALKEEVD-LPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred HHHHcC--CCEEEE------CCcc----CCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 888886 554433 2322 23567888888888876652 2333321 112222233466889999987
Q ss_pred -ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 -FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 -~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|= =..+.+++.++++.+++..|+.
T Consensus 766 av~gl-g~~tgn~~le~vv~~L~~~~~~ 792 (1146)
T PRK12999 766 AVASM-SGLTSQPSLNSIVAALEGTERD 792 (1146)
T ss_pred cchhh-cCCcCCHHHHHHHHHHHhcCCC
Confidence 2221 0125667889999999877654
No 213
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.65 E-value=0.056 Score=48.11 Aligned_cols=180 Identities=18% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 124 KDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
.-.+.++++.+.+.|++.+++ +..++..- +-..-..+++.++......++++.-. .-....++.++++|.+.+.+.+
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fvp-n~~~g~~~i~~i~~~~~~~~DvHLMv-~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFVP-NLTFGPDIIKAIRKITDLPLDVHLMV-ENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-SB-B-HHHHHHHHTTSSSEEEEEEES-SSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccCC-cccCCHHHHHHHhhcCCCcEEEEeee-ccHHHHHHHHHhcCCCEEEEcc
Confidence 345667777888889998876 33222210 01112344444443322223333321 1246789999999999999988
Q ss_pred CchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 203 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 203 e~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
|+.+ . ..+.++.++++|++++..+- .+...+.+. .++.. ++.+-+....| |..-+.
T Consensus 89 E~~~----------~---~~~~i~~ik~~g~k~Gialn--P~T~~~~~~---~~l~~----vD~VlvMsV~P--G~~Gq~ 144 (201)
T PF00834_consen 89 EATE----------D---PKETIKYIKEAGIKAGIALN--PETPVEELE---PYLDQ----VDMVLVMSVEP--GFGGQK 144 (201)
T ss_dssp GGTT----------T---HHHHHHHHHHTTSEEEEEE---TTS-GGGGT---TTGCC----SSEEEEESS-T--TTSSB-
T ss_pred cchh----------C---HHHHHHHHHHhCCCEEEEEE--CCCCchHHH---HHhhh----cCEEEEEEecC--CCCccc
Confidence 7631 2 23567788889987655443 333333332 22222 56777766554 543211
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 283 QKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 283 ~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. ..+.++.++.+|.+.++ ..|.+.+| +..+.......+|||.++.|.
T Consensus 145 f----~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 145 F----IPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp -----HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESH
T ss_pred c----cHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECH
Confidence 1 22334445555544443 34555553 223334567789999998885
No 214
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.33 E-value=1.7 Score=39.87 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++..-... .|.+.+ .++|+++. ..++++.+-.|..+.|.++.+.++|++.+.++-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~~n----~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRGSN----RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCCcc----HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 4455666777799999988642211 132222 35666654 34678888889999999999999999999887655
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----E--eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----I--IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----i--~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
+ .+++-..+.++...+. +-+...+ + .|..++..+..+.++.+.+.+ +..+.++..... |+
T Consensus 108 l----------~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~~~-g~ 173 (241)
T PRK14024 108 L----------ENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVTKD-GT 173 (241)
T ss_pred h----------CCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeecCC-CC
Confidence 4 1222222333333221 2122221 1 232233445667777777775 666666654332 22
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHH-hhh-hcCccccccCCccccCCCCChhHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA-LCF-LAGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~-~~l-~~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
- ..++.+.+.++. ... +..+-.++|-.+. .+... ..+ ..||+.++.|..+. ....+.++.+..
T Consensus 174 ~----~G~d~~~i~~i~----~~~-~ipviasGGi~s~-~D~~~l~~~~~~GvdgV~igra~~-~g~~~~~~~~~~ 238 (241)
T PRK14024 174 L----TGPNLELLREVC----ART-DAPVVASGGVSSL-DDLRALAELVPLGVEGAIVGKALY-AGAFTLPEALAV 238 (241)
T ss_pred c----cCCCHHHHHHHH----hhC-CCCEEEeCCCCCH-HHHHHHhhhccCCccEEEEeHHHH-cCCCCHHHHHHH
Confidence 1 223333322222 222 2122233332222 22211 112 35999998886333 344566665443
No 215
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=95.21 E-value=2.8 Score=39.44 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=125.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-----CcEEEEecCCCCHHHHHHHHHh-
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-----g~~i~~t~g~l~~e~l~~Lk~a- 193 (386)
..++.++-++.++.+.+.|++.+-++ .|..+ +.-.+.++.+.+. +..+.. ......+.++.-.++
T Consensus 18 ~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~-----~~e~e~~~~i~~~~~~~~~~~~~a-l~r~~~~die~a~~~~ 88 (284)
T cd07942 18 EPMSVEQKLRFFKLLVKIGFKEIEVG---FPSAS-----QTDFDFVRELIEEDLIPDDVTIQV-LTQAREDLIERTFEAL 88 (284)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCC-----HHHHHHHHHHHHccCCCCCCEEEE-EcCCChhhHHHHHHHh
Confidence 34899999999999999999988664 23222 3334555555332 233321 122234446666666
Q ss_pred -ccC--eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe---eeEeEEeec----CCCHHHHHHHHHHHhcC
Q 016605 194 -GLT--AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN---VCSGGIIGL----GEAEEDRVGLLHTLATL 260 (386)
Q Consensus 194 -G~~--~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~---v~~~~i~Gl----get~ed~~~~l~~l~~l 260 (386)
|++ .+.+.+-+.+ -...+++.+. ..+...+.++.+++.|++ ....+-|+. --..+.+.++++.+.+.
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 665 5777666653 3334454322 345556677788888875 233444443 12456677777777655
Q ss_pred -CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-eeec-Cccc--ccChhHHHhhhhcCcccc---
Q 016605 261 -PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-VRLS-AGRV--RFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 261 -~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~-i~i~-~g~~--~~~~~~~~~~l~~Gan~~--- 332 (386)
+..++.+. . +-.++|- ...++.++.+++...+..+|... +.+. .... ++.-.....++.+||..+
T Consensus 169 ~~~g~~~~~--~-i~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~ 241 (284)
T cd07942 169 WQPTPENKI--I-LNLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGT 241 (284)
T ss_pred hcCCCCcce--E-EEccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEee
Confidence 10122111 1 1233442 24577788888887777766421 1121 1111 122223456888999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|-. ..+++...++.+.+++..|..
T Consensus 242 ~~g~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 242 LFGNG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred CccCC-ccccchhHHHHHHHHHhcCCC
Confidence 22211 126778899999999887764
No 216
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.21 E-value=2.5 Score=38.98 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.++.+.+.|++.+++..-... ......-+++++.+.+ .++++...-|..+.+.++.+..+|++.+.++-...
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~----~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITAS----SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcc----cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 344455666789999887642211 1122334566666653 46788888999999999999999999998876554
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcC---CeeeEeEE--------------ee-cCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAG---INVCSGGI--------------IG-LGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~G---i~v~~~~i--------------~G-lget~ed~~~~l~~l~~l~~~~~~v 267 (386)
. +++...+. .+..| +-+..++- -| ..++..+..+.++.+.+.+ ++.+
T Consensus 108 ~----------~p~~~~~~---~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G--~~~i 172 (254)
T TIGR00735 108 K----------NPELIYEL---ADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG--AGEI 172 (254)
T ss_pred h----------ChHHHHHH---HHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--CCEE
Confidence 1 12211121 12223 22333221 11 1224556778888888886 6777
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC-ccccccCCccccCCCCCh
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDF 346 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G-an~~~~g~~~~t~~~~~~ 346 (386)
.++.... .|+ .+.+..+. + ...+...+ ..+-.++|-.+ .+.-...+..| |+.++.|. .......++
T Consensus 173 ivt~i~~-~g~----~~g~~~~~-~---~~i~~~~~-ipvia~GGi~s--~~di~~~~~~g~~dgv~~g~-a~~~~~~~~ 239 (254)
T TIGR00735 173 LLTSMDK-DGT----KSGYDLEL-T---KAVSEAVK-IPVIASGGAGK--PEHFYEAFTKGKADAALAAS-VFHYREITI 239 (254)
T ss_pred EEeCcCc-ccC----CCCCCHHH-H---HHHHHhCC-CCEEEeCCCCC--HHHHHHHHHcCCcceeeEhH-HHhCCCCCH
Confidence 7765432 233 12233322 2 22222222 12222332222 22234455656 99988776 333456789
Q ss_pred hHHHHHHHHcCCCc
Q 016605 347 DADQLMFKVLGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~~G~~p 360 (386)
++....+++.|+..
T Consensus 240 ~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 240 GEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHCCCcc
Confidence 99999999999753
No 217
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.21 E-value=1.3 Score=40.62 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....+.+ .-+++++.+++ .++++....|..+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~----~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRE----TMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCc----ccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 445555666778999888754221111112 23456666653 4678888899999999999999999998876433
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee------------cCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------------LGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G------------lget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
. .+++...+..+.+.+..+.+..++-.+ ..++..+..+.++.+.+.+ ++.+.++..
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEecc
Confidence 2 123333333333332223344433211 1234556677777777776 777777664
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhc-CccccccCCccccCCCCChhHHHH
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~-Gan~~~~g~~~~t~~~~~~~~~~~ 351 (386)
.. .|+. +.+.. ++++. .+... +..+-..+| +. +++.-...+.. ||+.++.|. .+.....+.++..+
T Consensus 172 ~~-~g~~----~g~~~-~~i~~---i~~~~-~~pvia~GG-i~-~~~di~~~l~~~g~dgv~vg~-al~~~~~~~~~~~~ 238 (243)
T cd04731 172 DR-DGTK----KGYDL-ELIRA---VSSAV-NIPVIASGG-AG-KPEHFVEAFEEGGADAALAAS-IFHFGEYTIAELKE 238 (243)
T ss_pred CC-CCCC----CCCCH-HHHHH---HHhhC-CCCEEEeCC-CC-CHHHHHHHHHhCCCCEEEEeH-HHHcCCCCHHHHHH
Confidence 43 2331 12222 22222 22222 211222222 21 12222334555 899998886 33344457777666
Q ss_pred HHHH
Q 016605 352 MFKV 355 (386)
Q Consensus 352 ~i~~ 355 (386)
.+++
T Consensus 239 ~~~~ 242 (243)
T cd04731 239 YLAE 242 (243)
T ss_pred HHhh
Confidence 6553
No 218
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=1.9 Score=40.97 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecCC-----CCHHHHHHHHHhcc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGM-----LEKHQAIELKKAGL 195 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g~-----l~~e~l~~Lk~aG~ 195 (386)
+.++-.+.++.+.+.|.+.|+.+-. .+.......+..+.++++.+++.|+.+.+ ++.. .+...+..+++.|+
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~-~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL-IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc-cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 4567788889999999998865431 12111124678899999999999998544 3332 25667888889888
Q ss_pred Ceeeccc
Q 016605 196 TAYNHNL 202 (386)
Q Consensus 196 ~~v~i~l 202 (386)
+.+-+..
T Consensus 93 ~glRlD~ 99 (360)
T COG3589 93 DGLRLDY 99 (360)
T ss_pred hheeecc
Confidence 8776643
No 219
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=94.72 E-value=0.58 Score=45.76 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=81.5
Q ss_pred CChhhHHHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC--C-HHHHHHHHHH
Q 016605 153 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR--S-YDERLETLKH 227 (386)
Q Consensus 153 ge~~~~~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~--s-~~~~l~~i~~ 227 (386)
|+|..++.+-..++.+++..+. ..++|. .-++.+..+++ +..+.++++.. +..++++.++- + |+..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtna-q~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNA-QFPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhcccc-cChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4566777888888888876555 334443 45677777776 67788889888 88888887654 2 4555666666
Q ss_pred HHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC---CCCCCCCCCHHHHHHHHH
Q 016605 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT---PLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 228 a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT---~l~~~~~~s~~e~~~~~a 296 (386)
+++.--....-+.+--|-+.+|+.+-.+.++.= .++++-+.--.-.... ++.....+..++..+...
T Consensus 440 lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rg--lp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~ 509 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRG--LPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVF 509 (601)
T ss_pred HHHhhcceEEEEEEeccccccccHHHHHHHhcc--CCceEEEeceeEecccccCcccccCccHHHHHHHHHH
Confidence 664322222323221245667887777777433 2667666444333322 222233345555555443
No 220
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=94.60 E-value=2.2 Score=40.03 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++++++.+.++.+.|++-+-++|-.+.++.++ ..++++...|+.+++ .++.+ +..+...+.++.--++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I--SIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEECCCHHHHHHHHHcCCC
Confidence 6899999999999999998777765333232222 345667778888874 35443 4445667777777777877
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 113 iIN 115 (282)
T PRK11613 113 IIN 115 (282)
T ss_pred EEE
Confidence 764
No 221
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=94.56 E-value=3.6 Score=40.48 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCC-HHH-HHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLE-KHQ-AIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~-~e~-l~~Lk~aG~~~ 197 (386)
.+.++.++.++++...+..-+-+ | -++....=.+.++.+++.+ ..+.+..-..+ +.. ++.+.++|++.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKv-G-------~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEA-G-------TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEE-C-------HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 57788888777765443321222 2 2444444467788887654 34444433322 222 77889999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee-eeecC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAVK 276 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-f~P~~ 276 (386)
+.+..++. .+...++++.+++.|+.+.++++ +. +|..+..+- + .. .++.+.++. .-|
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-np-~tp~e~i~~---l-~~--~vD~Vllht~vdp-- 311 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-NV-EDPVKLLES---L-KV--KPDVVELHRGIDE-- 311 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-CC-CCHHHHHHH---h-hC--CCCEEEEccccCC--
Confidence 99866543 22345678889999976655433 22 344333332 2 22 267777765 322
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
++. .+... .+...|.+..+..+.+.+| ++.+.-...+.+||+.++.|. .++. ..++.+..+.++
T Consensus 312 ~~~-----~~~~~----kI~~ikk~~~~~~I~VdGG---I~~eti~~l~~aGADivVVGs-aIf~-a~Dp~~aak~l~ 375 (391)
T PRK13307 312 EGT-----EHAWG----NIKEIKKAGGKILVAVAGG---VRVENVEEALKAGADILVVGR-AITK-SKDVRRAAEDFL 375 (391)
T ss_pred Ccc-----cchHH----HHHHHHHhCCCCcEEEECC---cCHHHHHHHHHcCCCEEEEeH-HHhC-CCCHHHHHHHHH
Confidence 211 11222 3333444444444555543 333434567789999998886 3433 234555444444
No 222
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.45 E-value=3.5 Score=36.93 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++.+.+..-.....|. .+.++.+++ .++++..-.+..+++.++.+.++|++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~-------~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS-------LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC-------HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 445577788888888999988876422222222 233444442 256665545567788999999999999998
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
+.... +.+...+.++.+...|+.+ ++.. .+.+++.. +.+++ ++.+.++ +..++.+
T Consensus 101 ~~~~~-----------~~~~~~~~~~~~~~~g~~~----~v~v-~~~~e~~~----~~~~g--~~~i~~t---~~~~~~~ 155 (217)
T cd00331 101 IVAAL-----------DDEQLKELYELARELGMEV----LVEV-HDEEELER----ALALG--AKIIGIN---NRDLKTF 155 (217)
T ss_pred eeccC-----------CHHHHHHHHHHHHHcCCeE----EEEE-CCHHHHHH----HHHcC--CCEEEEe---CCCcccc
Confidence 65332 1233445556667778765 2222 25666433 44454 6666655 3333322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.++.+. +...+..+|....-+..|-++ .++.-...+.+||+.++.|..+.
T Consensus 156 ----~~~~~~----~~~l~~~~~~~~pvia~gGI~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 156 ----EVDLNT----TERLAPLIPKDVILVSESGIS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred ----CcCHHH----HHHHHHhCCCCCEEEEEcCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 223322 223333343212222222222 12333566778999998887433
No 223
>PRK03739 2-isopropylmalate synthase; Validated
Probab=93.86 E-value=9.2 Score=39.55 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-----CcEEEEecCCCCHHHHHH----H
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIE----L 190 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-----g~~i~~t~g~l~~e~l~~----L 190 (386)
..++.++=++.++.+.+.|++.+-.+ .|..+ +.. .+.++.+.+. +..++.-.- .....++. +
T Consensus 47 v~~s~~~Ki~ia~~L~~~GV~~IE~G---fP~~s-~~e----~e~v~~i~~~~~~~~~~~i~~l~r-~~~~di~~a~~a~ 117 (552)
T PRK03739 47 EPMSPERKLRMFDLLVKIGFKEIEVG---FPSAS-QTD----FDFVRELIEEGLIPDDVTIQVLTQ-AREHLIERTFEAL 117 (552)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE---CCCcC-hHH----HHHHHHHHHhcCCCCCCEEEEEec-cchhHHHHHHHHh
Confidence 34899999999999999999988664 23222 223 3444444322 233322111 12232333 3
Q ss_pred HHhccCeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe---eeEeEEeecC----CCHHHHHHHHHHHhcC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN---VCSGGIIGLG----EAEEDRVGLLHTLATL 260 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~---v~~~~i~Glg----et~ed~~~~l~~l~~l 260 (386)
+.++...+.+.+-+.+ -...+++.+. ..+...++++.+++.|.. ....+.|+.- -+.+.+.++++.+.+.
T Consensus 118 ~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~ 197 (552)
T PRK03739 118 EGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDV 197 (552)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHh
Confidence 3344446777776663 3334444322 345556677777777743 2244555442 2456667777776543
Q ss_pred -CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---
Q 016605 261 -PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 261 -~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+.+.+.... +-.|+|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||..+
T Consensus 198 ~~ag~~~~~~---i~l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gt 270 (552)
T PRK03739 198 WQPTPERKVI---LNLPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGC 270 (552)
T ss_pred hcCCCCceeE---EEeccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEee
Confidence 112222111 1144553 335778888888877777763 2222211 111122223466889999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|-. ..+++.+.++++.+++..|+.
T Consensus 271 vnG~G-ERaGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 271 LFGNG-ERTGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred CCcCc-ccccChhHHHHHHHHHhcCCC
Confidence 22211 125667888888888777763
No 224
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.77 E-value=10 Score=42.75 Aligned_cols=214 Identities=11% Similarity=0.024 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHH--cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh----cCcEEEEe--c--CC------CCHH
Q 016605 122 MTKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGMEVCCT--L--GM------LEKH 185 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~--~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~----~g~~i~~t--~--g~------l~~e 185 (386)
+..++++..+..+.+ .|...+-+.||-+...---...++=++-++.+++ ..++..+. | |. +.+.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 678888888888776 3777777776543210000011223344444543 22332222 1 22 2344
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee-------c-CCCHHHHHHHHHHH
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-------L-GEAEEDRVGLLHTL 257 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G-------l-get~ed~~~~l~~l 257 (386)
.++..++.|+|.+-+ +|++ .+.+....+++.+++.|..+...+.|- . ..|.+-+.++++.+
T Consensus 630 f~~~~~~~Gidifri-fD~l----------N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRV-FDSL----------NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEE-CccC----------cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 555667779887776 3332 356677788999999999888888874 1 23677788888888
Q ss_pred hcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccccCC
Q 016605 258 ATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 258 ~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+.| ++.+.+ ++|- ...++.+..+++...|..+ +..+++. ....++.......++.+||+.+-..-
T Consensus 699 ~~~G--ad~I~i------kDt~----Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai 765 (1143)
T TIGR01235 699 EKAG--AHILGI------KDMA----GLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAV 765 (1143)
T ss_pred HHcC--CCEEEE------CCCc----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 8886 554433 2332 2356777788888777655 3333332 11122222334668899999872111
Q ss_pred -cc-ccCCCCChhHHHHHHHHcCCC
Q 016605 337 -KL-LTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 337 -~~-~t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+ -.+..++.+.++.+++..|+.
T Consensus 766 ~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 766 DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 01 012334577778888877654
No 225
>PRK15452 putative protease; Provisional
Probab=93.71 E-value=2.3 Score=42.66 Aligned_cols=89 Identities=9% Similarity=0.005 Sum_probs=59.8
Q ss_pred EEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHH
Q 016605 174 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 251 (386)
Q Consensus 174 ~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~ 251 (386)
++.+..| +.+.++...++|+|.|.++.+.+ -+... ..-+.++..++++.+|+.|.++..++-.-. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 57888899999999999999887 33221 234778899999999999988654432212 33445566
Q ss_pred HHHHHHhcCCCCCCeEee
Q 016605 252 GLLHTLATLPTHPESVPI 269 (386)
Q Consensus 252 ~~l~~l~~l~~~~~~v~~ 269 (386)
+.++.+.+++ ++.+.+
T Consensus 80 ~~l~~l~~~g--vDgvIV 95 (443)
T PRK15452 80 RDLEPVIAMK--PDALIM 95 (443)
T ss_pred HHHHHHHhCC--CCEEEE
Confidence 6666666775 555443
No 226
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.64 E-value=0.77 Score=41.39 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+... ....++++ ||+.. ....+.+.+.++.+++.|+.++.-.. -+.+.++.-++.
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGldv----~~~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~ 143 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDV----AGQAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEV 143 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh----hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 35666665543 34566665 22211 13568899999999999998654332 368999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
|.++|-+.-..+.+.+..-.....+++..++.+.+++.|+.|++ |+|-|.+.+..+..
T Consensus 144 GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA----GHgLny~Nv~~i~~ 201 (234)
T cd00003 144 GADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNA----GHGLNYENVKPIAK 201 (234)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHHHh
Confidence 99999875544422111100112466777888888889998876 68888887766553
No 227
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.44 E-value=2.9 Score=38.69 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
++.+++++.+.+..+.|+.-+-+++....++. +....+++..+++.+++. ++.+ +......+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCCC
Confidence 78999999999999999987777643332221 123456677777877754 5544 3345667777777777877
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 99 iIN 101 (257)
T cd00739 99 IIN 101 (257)
T ss_pred EEE
Confidence 666
No 228
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=93.33 E-value=1 Score=40.70 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+...+ ...++++ ||+.. ....+.+.+.++.+++.|+.++.=.. -+.+.++.-++.
T Consensus 72 ~~emi~ia~~vk---P~~vtLVPEkr~ElTTegGldv----~~~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEIK---PEQVTLVPEARDEVTTEGGLDV----ARLKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCccCCcCchh----hhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 357776665543 4567665 22211 12567899999999999998643322 358999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
|.++|-+.-..+.+.+..-.....++...++.+.+++.|+.|++ |+|-|.+.+..+.
T Consensus 144 GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLny~Nv~~i~ 200 (237)
T TIGR00559 144 GADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNA----GHGLNYHNVKYFA 200 (237)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHhHHHHH
Confidence 99999876555421111100011366677778888888988776 6788877775554
No 229
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=93.13 E-value=2.5 Score=38.06 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEE
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~ 176 (386)
.|+.|||++....+.+.|-+-+-+.+| +|..+..+.|-++++.+.|++..
T Consensus 58 ~~tLeeIi~~m~~a~~~Gk~VvRLhSG------DpsiYgA~~EQm~~L~~~gI~ye 107 (254)
T COG2875 58 SLTLEEIIDLMVDAVREGKDVVRLHSG------DPSIYGALAEQMRELEALGIPYE 107 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeecC------ChhHHHHHHHHHHHHHHcCCCeE
Confidence 389999999999999999766667664 46778888998888887776543
No 230
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.07 E-value=1.7 Score=38.67 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.++|+.+..++.+.+-|++.+-++- .. +.-.+.|+.+++.--++.+-.|+ ++.+.++.+.++|.+.+--
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 5899999999999999999886642 11 34556666666432266666666 8999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
|+-+. +.++.+++.|+.+.-+++ |.-|+..-++
T Consensus 92 -------------P~~~~----ev~~~a~~~~ip~~PG~~-----TptEi~~Ale 124 (211)
T COG0800 92 -------------PGLNP----EVAKAANRYGIPYIPGVA-----TPTEIMAALE 124 (211)
T ss_pred -------------CCCCH----HHHHHHHhCCCcccCCCC-----CHHHHHHHHH
Confidence 22222 567888889987554443 5666655443
No 231
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.07 E-value=7.1 Score=35.89 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|++.+++..-.....+. +.-+++++.++ ..++++.+.-|..+.+.++.+.+.|++.+.++-....
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 444455567899999886532211122 33455666665 3467888889999999999999999999988643321
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----------Eeec-C--CCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGG----------IIGL-G--EAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----------i~Gl-g--et~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+++...+..+...+..+-+..++ +.-. + .+..+..+.++.+.+++ ++.+.++...
T Consensus 109 ----------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~~i~ 176 (253)
T PRK02083 109 ----------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMD 176 (253)
T ss_pred ----------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEcCCc
Confidence 12222222222111112233322 1111 1 12234556666666665 5555554332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhh-cCccccccCCccccCCCCChhHHHHH
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
. .|+. . .++.+ ++..++...+- .+-.++|-.+. .+. ...+. .||+.++.|. .+.....++++.+..
T Consensus 177 ~-~g~~-~---g~d~~----~i~~~~~~~~i-pvia~GGv~s~-~d~-~~~~~~~G~~gvivg~-al~~~~~~~~~~~~~ 243 (253)
T PRK02083 177 R-DGTK-N---GYDLE----LTRAVSDAVNV-PVIASGGAGNL-EHF-VEAFTEGGADAALAAS-IFHFGEITIGELKAY 243 (253)
T ss_pred C-CCCC-C---CcCHH----HHHHHHhhCCC-CEEEECCCCCH-HHH-HHHHHhCCccEEeEhH-HHHcCCCCHHHHHHH
Confidence 1 1332 1 12222 22222222321 22233322221 222 34454 5999998887 444556889999999
Q ss_pred HHHcCCCc
Q 016605 353 FKVLGLTP 360 (386)
Q Consensus 353 i~~~G~~p 360 (386)
+++.|+..
T Consensus 244 ~~~~~~~~ 251 (253)
T PRK02083 244 LAEQGIPV 251 (253)
T ss_pred HHHCCCcc
Confidence 99998754
No 232
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=92.85 E-value=5.3 Score=37.00 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
..+++++++.+++..+.|+.-+-+++....+... ....+++...++.+++. ++.+++ ....++.++.--++|+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi--DT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV--DTYRAEVARAALEAGA 96 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--eCCCHHHHHHHHHcCC
Confidence 3689999999999999999888775432222211 12345688888888754 666543 3355677776666777
Q ss_pred Ceee
Q 016605 196 TAYN 199 (386)
Q Consensus 196 ~~v~ 199 (386)
+.|+
T Consensus 97 ~iIN 100 (257)
T TIGR01496 97 DIIN 100 (257)
T ss_pred CEEE
Confidence 7665
No 233
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.64 E-value=8.4 Score=35.63 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHhhc--CcEE-EE--ecCCC-
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRDM--GMEV-CC--TLGML- 182 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik~~--g~~i-~~--t~g~l- 182 (386)
+.+.-.+.++.+.+.|++-+-++--..+|. ..| ...+.+++.++.+++. .+++ .. .|-..
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 567777778888888998777753221221 111 2236788889998843 4442 11 12211
Q ss_pred --CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 183 --EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 183 --~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.++.++.++++|++.+.+.-. .+++..+.++.+++.|+... +++...-+.+.+...++...
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl-------------p~ee~~~~~~~~~~~gl~~i--~lv~P~T~~eri~~i~~~~~-- 164 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL-------------PLEESGDLVEAAKKHGVKPI--FLVAPNADDERLKQIAEKSQ-- 164 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-------------ChHHHHHHHHHHHHCCCcEE--EEECCCCCHHHHHHHHHhCC--
Confidence 267899999999999887422 34556677888899998643 33333444555555554332
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..+.+.......|.. ... ..+....+...|...+.. +-+. .++. ++.......+||+.++.|..+
T Consensus 165 ----gfiy~vs~~G~TG~~----~~~-~~~~~~~i~~lr~~~~~p-i~vg---fGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 165 ----GFVYLVSRAGVTGAR----NRA-ASALNELVKRLKAYSAKP-VLVG---FGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred ----CCEEEEECCCCCCCc----ccC-ChhHHHHHHHHHhhcCCC-EEEe---CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 133333322222221 111 122455566666554331 2222 2333 444456778999999888743
No 234
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.50 E-value=4.2 Score=36.26 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++|++...+..+...|.+.+++..+... +.+.. .++++.+++ .++++.+-.|..+.+.++.+.++|+|.+-
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 379999999999988899999988543211 11222 455555553 36778888899999999999999999886
Q ss_pred cc
Q 016605 200 HN 201 (386)
Q Consensus 200 i~ 201 (386)
++
T Consensus 204 VG 205 (205)
T TIGR01769 204 TG 205 (205)
T ss_pred eC
Confidence 54
No 235
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=92.32 E-value=1.1 Score=40.64 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+...+ ...++++ ||+.. ....+.+.+.++.+++.|+.++.-.. -+.+.++.-++.
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv----~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~ 144 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDV----AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKEL 144 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T----CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHT
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChh----hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHc
Confidence 367777766654 3567775 22211 13468999999999999998654332 258999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCC--HHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRS--YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s--~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
|+++|-+.-..+.+.+..-..... +++..++.+.+++.|+.|++ |+|-+.+.+..+
T Consensus 145 Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnA----GHgL~y~N~~~i 202 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNA----GHGLNYDNVRPI 202 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEE----ETT--TTTHHHH
T ss_pred CCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHH
Confidence 999998755444222211000111 46777888889999998877 566665554443
No 236
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.30 E-value=1.5 Score=39.83 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
.+.++...+.|++.++++-=..-..|.+.+.+.+.++++. ...++.+--|..+.+.++.|.++|++++.++--+.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~---~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av-- 108 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA---TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV-- 108 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh---CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee--
Confidence 4445566778999888752111112344454444444443 35567778899999999999999999999875443
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--Eee----cC---CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGG--IIG----LG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~G----lg---et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
++++... +.+++.|-++...+ =-| -| .+.-++.++++.+.+.+ ...+-+.- +-..||
T Consensus 109 --------~~p~~v~---~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~ii~Td-I~~DGt 174 (241)
T COG0106 109 --------KNPDLVK---ELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHILYTD-ISRDGT 174 (241)
T ss_pred --------cCHHHHH---HHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeEEEEe-cccccc
Confidence 2343333 33445553322221 111 12 13335667777777775 44443333 233455
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
- ..+..+-+.++.... +..+..++|--++..-.....+. |+.+++.|..+. ....+..|.++..+
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~Di~~l~~~~-G~~GvIvG~ALy-~g~~~l~ea~~~~~ 239 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLDDIKALKELS-GVEGVIVGRALY-EGKFTLEEALACVR 239 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHHHHHHHHhcC-CCcEEEEehHHh-cCCCCHHHHHHHHh
Confidence 3 233444444443333 22233444433332211112222 888888886332 34445666555443
No 237
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=92.24 E-value=9.9 Score=35.50 Aligned_cols=223 Identities=18% Similarity=0.169 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC-CCCCCh-hhHHHHHHHHHHHhhc--CcEEEEecCC---CC-HHHHHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-DTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~-~~~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g~---l~-~e~l~~Lk~a 193 (386)
.++|||.+.+.+..+.|..-+++=. + +..|.+ ...+.+.++++.+++. ++-+..|.|. .+ ++.++.+...
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~--R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHA--RDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-E--E-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeec--CCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998888743 3 333444 5668888888988854 5556555443 22 4455555544
Q ss_pred ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 194 G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
..+..++++-+. -...+. --.++++...+.++.+++.|+.....+ | +..++.....++++ |.-...+.+..+
T Consensus 101 ~pd~asl~~gs~n~~~~~~-~~~n~~~~~~~~~~~~~e~Gi~pe~ev-~----d~~~l~~~~~l~~~-G~l~~p~~~~~v 173 (272)
T PF05853_consen 101 KPDMASLNPGSMNFGTRDR-VYINTPADARELARRMRERGIKPEIEV-F----DPGHLRNARRLIEK-GLLPGPLLVNFV 173 (272)
T ss_dssp --SEEEEE-S-EEESGGCS-EE---HHHHHHHHHHHHHTT-EEEEEE-S----SHHHHHHHHHHHHT-TSS-SSEEEEEE
T ss_pred CCCeEEecccccccccCCc-eecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHHHHHHHHHC-CCCCCCeEEEEc
Confidence 566666655443 110000 013468888899999999999877633 2 45566655555543 421122333322
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCccccc-cCCccccCCC-------
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF-TGEKLLTTPN------- 343 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~~-~g~~~~t~~~------- 343 (386)
. |.+ .. .+.+++.+..++..... +....+.+ |+.. -.....++..|.+.=+ .++.+...++
T Consensus 174 l---G~~-~g-~~~~~~~l~~~l~~l~~---~~~w~v~~~g~~~--~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNa 243 (272)
T PF05853_consen 174 L---GVP-GG-MPATPENLLAMLDMLPE---GAPWSVCGIGRNQ--WPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNA 243 (272)
T ss_dssp E---S-T-TS---S-HHHHHHHHHHHHH---TEEEEEEE-GGGH--HHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HH
T ss_pred c---cCC-CC-CCCCHHHHHHHHHhcCC---CCcEEEEccchhh--HHHHHHHHHcCCceEEecCccccCCCCCCCcCHH
Confidence 2 333 22 25577777766655544 32222221 1111 1234556666766321 1222211221
Q ss_pred CChhHHHHHHHHcCCCcCCC
Q 016605 344 NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 344 ~~~~~~~~~i~~~G~~p~~~ 363 (386)
--++...++++++|+.|...
T Consensus 244 elV~~a~~ia~~~grevAt~ 263 (272)
T PF05853_consen 244 ELVERAVRIARELGREVATP 263 (272)
T ss_dssp HHHHHHHHHHHHTT-EB--H
T ss_pred HHHHHHHHHHHHcCCCCCCH
Confidence 13456688899999988653
No 238
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=92.15 E-value=2 Score=38.98 Aligned_cols=116 Identities=10% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+... ....++++ ||+.. ....+.+.+.++.+++.|+.++.=.. -+.+.++.-++.
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGldv----~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~ 146 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGLDV----AGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV 146 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh----hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 35666665544 34567765 22211 13568899999999999988643322 468999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 252 (386)
|.++|-+.-..+.+.+.. .....++....+.+.+++.|+.|++ |+|-|.+.+..
T Consensus 147 GAd~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnA----GHgLny~Nv~~ 200 (239)
T PRK05265 147 GADRIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNA----GHGLNYHNVKP 200 (239)
T ss_pred CcCEEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHhHHH
Confidence 999998765554221111 1122467777788888889988776 68888877766
No 239
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.10 E-value=7.5 Score=35.36 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.++.+.+.|++.+++..-... ........+.++.+. ..++++.+..|..+.+.++.+.++|++.+.++-...
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~----~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGA----FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhh----hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 444555666789988877532111 112233444555554 457788888888899999999999999998865443
No 240
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.91 E-value=10 Score=35.07 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
++.+.++.+.+.|+..+.+.+......|. ++.++.+++ ..+++....-..++.++...+++|.|.+.+....
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~-------~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGS-------LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCC-------HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 44566677777898888665422222221 344555553 4677766555678889999999999999985543
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
+ +.++..+.++.+++.|+.+-+.+ .|.+|+.. +.+++ ++.++++... +...
T Consensus 144 l-----------~~~~l~~li~~a~~lGl~~lvev-----h~~~E~~~----A~~~g--adiIgin~rd------l~~~- 194 (260)
T PRK00278 144 L-----------DDEQLKELLDYAHSLGLDVLVEV-----HDEEELER----ALKLG--APLIGINNRN------LKTF- 194 (260)
T ss_pred C-----------CHHHHHHHHHHHHHcCCeEEEEe-----CCHHHHHH----HHHcC--CCEEEECCCC------cccc-
Confidence 2 22455567788888887633222 25566533 44665 7777765321 1111
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 285 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 285 ~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.++.+... .+.+ .+|+....++-|-+. .++.....+.+||+.+..|..+.
T Consensus 195 ~~d~~~~~---~l~~-~~p~~~~vIaegGI~-t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 195 EVDLETTE---RLAP-LIPSDRLVVSESGIF-TPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred cCCHHHHH---HHHH-hCCCCCEEEEEeCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 22333322 2223 345422333322121 23444567788999998887444
No 241
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=91.71 E-value=9.8 Score=34.32 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....+.+. -.++++.+++ .++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPV----NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCC----CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 4455666677789999888632111111222 2445555553 4678888888899999999999999998876544
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----Ee--ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----II--GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----i~--Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
.. +++...+..+...+.-+-+..++ ++ |. ..+..+..+.++.+.+.+ ++.+.++.... .|
T Consensus 106 l~----------dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g 172 (234)
T cd04732 106 VK----------NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DG 172 (234)
T ss_pred Hh----------ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CC
Confidence 31 12222222222211111122221 11 11 123445667777777775 66666654322 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+. ..+..+.+.+ .+...+- .+-..+|-.+. .+ -...+..||+.++.|..+
T Consensus 173 ~~----~g~~~~~i~~----i~~~~~i-pvi~~GGi~~~-~d-i~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 173 TL----SGPNFELYKE----LAAATGI-PVIASGGVSSL-DD-IKALKELGVAGVIVGKAL 222 (234)
T ss_pred cc----CCCCHHHHHH----HHHhcCC-CEEEecCCCCH-HH-HHHHHHCCCCEEEEeHHH
Confidence 32 1223332222 2222221 12222221221 22 245566799999888643
No 242
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=91.67 E-value=11 Score=34.63 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec-ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH-NLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i-~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+++.++.+..++.|+....|+ .+.+.++.|.+.|+..+-+ |-|.. .+.-++.+.+.|.+
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl~---------------n~~lL~~~A~tgkP-- 115 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDLT---------------NLPLLEYIAKTGKP-- 115 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGTT----------------HHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEecccccc---------------CHHHHHHHHHhCCc--
Confidence 4667777778888899877765 4789999999999888876 22221 12445666667776
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccc
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVR 315 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~ 315 (386)
+|+.. .-+.+|+.+.++.+++-+ +.+.+-++...-+| .+..+--++.+...+..++ ..+..+. =+
T Consensus 116 --vIlSTG~stl~EI~~Av~~~~~~~-~~~l~llHC~s~YP--------~~~e~~NL~~i~~L~~~f~-~~vG~SD--Ht 181 (241)
T PF03102_consen 116 --VILSTGMSTLEEIERAVEVLREAG-NEDLVLLHCVSSYP--------TPPEDVNLRVIPTLKERFG-VPVGYSD--HT 181 (241)
T ss_dssp --EEEE-TT--HHHHHHHHHHHHHHC-T--EEEEEE-SSSS----------GGG--TTHHHHHHHHST-SEEEEEE---S
T ss_pred --EEEECCCCCHHHHHHHHHHHHhcC-CCCEEEEecCCCCC--------CChHHcChHHHHHHHHhcC-CCEEeCC--CC
Confidence 44445 458899999999995554 34444444432222 2223333566777777777 3343331 12
Q ss_pred cChhHHHhhhhcCcccc---ccCC----ccccCCCCChhHHHHHHHH
Q 016605 316 FSMPEQALCFLAGANSI---FTGE----KLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 316 ~~~~~~~~~l~~Gan~~---~~g~----~~~t~~~~~~~~~~~~i~~ 355 (386)
.+......++..||..| ++=+ ........++++..+|++.
T Consensus 182 ~g~~~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ 228 (241)
T PF03102_consen 182 DGIEAPIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRD 228 (241)
T ss_dssp SSSHHHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHH
T ss_pred CCcHHHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHH
Confidence 23344567778899987 3221 1223445688888888765
No 243
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.59 E-value=10 Score=34.92 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhH----HHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~----~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
+.|.|...++..+..|++- ..+|...| --.|..| +.=++++++++ +.|+.+.+. .++.+.++...++ +|.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~-lRGgafKP-RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE--vm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKA-LRGGAFKP-RTSPYSFQGLGEEGLKLLKRAADETGLPVVTE--VMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhh-ccCCcCCC-CCCcccccccCHHHHHHHHHHHHHcCCeeEEE--ecCHHHHHHHHhh-hhH
Confidence 5789999999999888753 33333222 1223222 45566666666 568876543 3678888888887 777
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee-EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC-SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~-~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+.++.-- ++.+..++++|-.-. +-+-=|++.|.+|+....+++..-| +...|-.- .
T Consensus 132 lqvGARN-----------------MQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCE-----R 188 (286)
T COG2876 132 LQVGARN-----------------MQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCE-----R 188 (286)
T ss_pred HHhcccc-----------------hhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEe-----c
Confidence 7765311 244456666663211 1122367889999999999998887 43322211 1
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec--CcccccChhHHHhhhhcCccccccC---C--ccc--cCCCCC
Q 016605 277 GTP-LQDQKPVEIWEMIRMIATARIVMP-KAMVRLS--AGRVRFSMPEQALCFLAGANSIFTG---E--KLL--TTPNND 345 (386)
Q Consensus 277 gT~-l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g---~--~~~--t~~~~~ 345 (386)
|-. ++...+.+.+ +..+.++|.... ..++..+ +|+-.+-......++.+||+.++.+ + .-+ .....+
T Consensus 189 GIRtfe~~TRntLD--i~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~ 266 (286)
T COG2876 189 GIRTFEKATRNTLD--ISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLT 266 (286)
T ss_pred ccccccccccceec--hHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCC
Confidence 211 1111111111 233445554432 1233333 4444555677788999999999643 1 111 123356
Q ss_pred hhHHHHHHHH
Q 016605 346 FDADQLMFKV 355 (386)
Q Consensus 346 ~~~~~~~i~~ 355 (386)
+++..++.++
T Consensus 267 ~~~f~~l~~~ 276 (286)
T COG2876 267 PEEFEELVKE 276 (286)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 244
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=91.52 E-value=12 Score=34.81 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
.+.+.+++.+++..+.|..-+-+.++. . + ....+.+...++.+++. ++++++ .....+.++.--++ |.+-|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~-~--~-~eE~~r~~~~v~~l~~~~~~plsI--DT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGT-A--V-EEEPETMEWLVETVQEVVDVPLCI--DSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-C--c-hhHHHHHHHHHHHHHHhCCCCEEE--eCCCHHHHHHHHHhCCCCCEE
Confidence 678999999999999999877676542 1 1 23456778888877643 555543 44567777777666 76655
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHH----HHHHHHHhcCCCCCCeEeeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDR----VGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~----~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+ ++.+. ...+ +.+..++++|..+..-.+ -|...|.++. .+.++.+.+.|...+.+.+-+
T Consensus 96 NsIs~~~-----------~~~~---~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDP 161 (261)
T PRK07535 96 NSVSAEG-----------EKLE---VVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDP 161 (261)
T ss_pred EeCCCCC-----------ccCH---HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence 4 22111 1122 345667788877554333 3444455443 444555666653223444433
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC--------hhHHHhhhhcCccccc
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS--------MPEQALCFLAGANSIF 333 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~--------~~~~~~~l~~Gan~~~ 333 (386)
.+ ++ +.. ..-...+.++.+...+..+|...+-+..++.+++ .-.-.++..+|.+.-+
T Consensus 162 gi---~~-~~~-~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI 226 (261)
T PRK07535 162 LV---LP-LSA-AQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAI 226 (261)
T ss_pred CC---Cc-ccC-ChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEe
Confidence 22 11 211 1112445566777777777643332222223222 2233455666766654
No 245
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=91.18 E-value=8.5 Score=35.59 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.+++++.+....+.|.+-+-+.++...++. .....+.+...++.+++. ++.+ +....+.+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 68999999999999999988777665443322 224456788888888754 5554 3455678888888888866
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 99 iIN 101 (258)
T cd00423 99 IIN 101 (258)
T ss_pred EEE
Confidence 555
No 246
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.15 E-value=1.2 Score=43.20 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-hhhHHHHHHHHHHHhhcCcEEEEe--cCC-----CCHHHHHHHHHhc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-~~~~~~l~~~i~~ik~~g~~i~~t--~g~-----l~~e~l~~Lk~aG 194 (386)
+.++..+.++.+.+.|++.++.+- +.+... ....+.+.++++.+++.|+++.+. +.. .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL--~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL--HIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC--CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 688999999999999998876532 222222 245678888889999999996543 322 2344578899999
Q ss_pred cCeeecc
Q 016605 195 LTAYNHN 201 (386)
Q Consensus 195 ~~~v~i~ 201 (386)
++.+-+.
T Consensus 90 i~~lRlD 96 (357)
T PF05913_consen 90 IDGLRLD 96 (357)
T ss_dssp -SEEEES
T ss_pred CCEEEEC
Confidence 9888763
No 247
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.09 E-value=11 Score=33.95 Aligned_cols=132 Identities=15% Similarity=0.104 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++.--...-.+.+.++ ++++.+. ..++++....|..+.+.++.+.++|++.+-++-..
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 334455566678999887753222111222333 3444443 34677888889999999999999999998877433
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee---------c-C---CCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---------L-G---EAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G---------l-g---et~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
. .+++...+..+...+..+.+..++--+ . + ++..+..+.++.+.+.+ ++.+.++.
T Consensus 107 l----------~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~i~~ 174 (232)
T TIGR03572 107 L----------ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG--AGEILLNS 174 (232)
T ss_pred h----------cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEeC
Confidence 2 112222222222211113333333221 1 1 12344567777777776 67777766
Q ss_pred ee
Q 016605 272 LL 273 (386)
Q Consensus 272 f~ 273 (386)
+.
T Consensus 175 i~ 176 (232)
T TIGR03572 175 ID 176 (232)
T ss_pred CC
Confidence 43
No 248
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.00 E-value=12 Score=34.03 Aligned_cols=184 Identities=12% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHH---hccCeeecccC
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK---AGLTAYNHNLD 203 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~---aG~~~v~i~le 203 (386)
-.+..+.+.+.|-++|.+-. ....+++-+.+..+++ ...+.++.+..+.+.+..+.+ .+++.+.++.-
T Consensus 31 t~~a~~~~~~rgr~ef~~~~--------e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~g 101 (231)
T TIGR00736 31 TYKASRDIEKRGRKEFSFNL--------EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAH 101 (231)
T ss_pred HHHHHHHHHHcCCcccCcCc--------ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECC
Confidence 34455667778877763211 1244567777777763 336677777766555544432 36777777665
Q ss_pred ch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 204 TS-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 204 ~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
-. +++.+.=.+ .++++...+.++.+++.+++|.+-+=.|. +.++..++.+.+.+.| .+.+.+....| |.+
T Consensus 102 CP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~--g~~ 175 (231)
T TIGR00736 102 CRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP--GKP 175 (231)
T ss_pred CCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC--CCc
Confidence 44 333322111 24778888888888877877776666543 4456778888888886 77887765433 221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. . . ++.+...+..+++ +.-+..|-+. ..+.....+..||+.++.+.
T Consensus 176 ~-----a-~---~~~I~~i~~~~~~-ipIIgNGgI~-s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 176 Y-----A-D---MDLLKILSEEFND-KIIIGNNSID-DIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred h-----h-h---HHHHHHHHHhcCC-CcEEEECCcC-CHHHHHHHHHhCCCeEEEcH
Confidence 1 1 1 3334444444432 1122222221 22334566778999998775
No 249
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.90 E-value=11 Score=33.60 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec-
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH- 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i- 200 (386)
.+.+.|.+.++.+..-|.+.+-+-. + .++.+.++.+ .++++|++. ++++.+-.-.++|.|.+-+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d----p~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D----PELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C----HHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 5678888888887777777665532 1 3444444433 378888874 6788888888999999998
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
+.|++ |.. .+.-+.+++++.-+..++. .+.+++++.. --..++-..+...+.++| .|.+. -..||
T Consensus 89 NfDsF---Y~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH--iL~ld~Qv~LA~~L~~~G--aDiIQ-----TEGgt 155 (242)
T PF04481_consen 89 NFDSF---YAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPH--ILPLDQQVQLAEDLVKAG--ADIIQ-----TEGGT 155 (242)
T ss_pred chHHH---Hhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCc--cccHHHHHHHHHHHHHhC--CcEEE-----cCCCC
Confidence 56665 322 2345788999888888876 3444444443 335667788888888886 44332 23344
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHhCCCccee-ecCcccccChhHHHhhhhcCccccccC
Q 016605 279 PLQDQKPVEI---WEMIRMIATARIVMPKAMVR-LSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 279 ~l~~~~~~s~---~e~~~~~a~~R~~lp~~~i~-i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
.-....+... +...-.++.+..+.....++ +++. ++..-...+++.+||..+=.|
T Consensus 156 ss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcAS--GlS~vT~PmAiaaGAsGVGVG 214 (242)
T PF04481_consen 156 SSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCAS--GLSAVTAPMAIAAGASGVGVG 214 (242)
T ss_pred CCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEecc--CcchhhHHHHHHcCCcccchh
Confidence 3222111111 11111233333332222222 2321 233334577999999998334
No 250
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.85 E-value=11 Score=33.27 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEe-cCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCT-LGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t-~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++.+.+.++.+.+.|++.+.+.-.+.+... ....-.+.++.+++. ...+.+. ...-..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 45678888888999999999988511111111 122345566666542 3332111 111246778999999999987
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..+. .+...+.++.+++.|+.+.. .+.. .+..+.. +.+... ++.+.+..+.| |+.
T Consensus 85 vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~~-~t~~e~~---~~~~~~---~d~i~~~~~~~--g~t 140 (210)
T TIGR01163 85 VHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLNP-ATPLEFL---EYVLPD---VDLVLLMSVNP--GFG 140 (210)
T ss_pred EccCC-------------chhHHHHHHHHHHcCCcEEE--EECC-CCCHHHH---HHHHhh---CCEEEEEEEcC--CCC
Confidence 74322 13334566778888876533 2222 2333322 222222 45555554433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
-.. ..+.. ++.+...+.+.++ ..+-+.+ +++++.-...+..||+.++.|..+.
T Consensus 141 g~~---~~~~~-~~~i~~i~~~~~~~~~~~~i~v~G---GI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 141 GQK---FIPDT-LEKIREVRKMIDENGLSILIEVDG---GVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred ccc---ccHHH-HHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHcCCCEEEEChHHh
Confidence 111 11221 2233333333322 1122222 3344444456789999998886443
No 251
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.63 E-value=5.2 Score=36.94 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|+..+.+.+. +..|.--++.+..++ ...+++....-.+++.++.+-+.+|.|.|.+-+..
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe-------~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE-------PKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---------SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred CHHHHHHHHHhcCCCEEEEECC-------CCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 3344556777789988877652 223333344444455 34677777777889999999999999999986666
Q ss_pred h-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 205 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 205 ~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
+ ++ +..+-++.++..|+.+-+- -.|.+|+...+ ..+ ++.++++.... .| +
T Consensus 142 L~~~------------~l~~l~~~a~~lGle~lVE-----Vh~~~El~~al----~~~--a~iiGINnRdL--~t-f--- 192 (254)
T PF00218_consen 142 LSDD------------QLEELLELAHSLGLEALVE-----VHNEEELERAL----EAG--ADIIGINNRDL--KT-F--- 192 (254)
T ss_dssp SGHH------------HHHHHHHHHHHTT-EEEEE-----ESSHHHHHHHH----HTT---SEEEEESBCT--TT-C---
T ss_pred CCHH------------HHHHHHHHHHHcCCCeEEE-----ECCHHHHHHHH----HcC--CCEEEEeCccc--cC-c---
Confidence 5 33 2345668889999873221 13667765544 454 77888886432 11 1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 284 KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 284 ~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
..+.....+ ..-.+|+..+.++-+-+. .++.......+|++.++.|+.+..+
T Consensus 193 -~vd~~~~~~----l~~~ip~~~~~iseSGI~-~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 193 -EVDLNRTEE----LAPLIPKDVIVISESGIK-TPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp -CBHTHHHHH----HHCHSHTTSEEEEESS-S-SHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred -ccChHHHHH----HHhhCccceeEEeecCCC-CHHHHHHHHHCCCCEEEECHHHhCC
Confidence 122222222 223455544555432122 1333345567899999999866544
No 252
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.55 E-value=5.9 Score=33.05 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-EE-EecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~-~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++|+.+.+ .+..+.-+.+++- .| ...+.+.++++.+++.|.+ +. +--|.+.++.++.|+++|++.+.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DG--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cc--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 5888888765 3455555555431 12 2345677777788888776 44 45677889999999999999887
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 4
No 253
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.52 E-value=14 Score=33.87 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChhh-------------HHHHHHHHHHHhhc-CcEEEE--e-cCCC--
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-------------FNQILEYVKDIRDM-GMEVCC--T-LGML-- 182 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~~-------------~~~l~~~i~~ik~~-g~~i~~--t-~g~l-- 182 (386)
+.+...+.++.+.+.|++.+.+.--..++. ..+.. .+..++.++.+++. .+++.. . +-..
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 568888889999999999888752111111 11211 13678888888853 444322 2 1111
Q ss_pred -CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 183 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 183 -~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
.++.++.++++|++.+.+. .-.+++..+.++.++++|+.... ++...-+.+.+...+...
T Consensus 92 G~~~fi~~~~~aG~~giiip-------------Dl~~ee~~~~~~~~~~~g~~~i~--~i~P~T~~~~i~~i~~~~---- 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIP-------------DLPPEEAEEFREAAKEYGLDLIF--LVAPTTPDERIKKIAELA---- 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEEC-------------CCCHHHHHHHHHHHHHcCCcEEE--EeCCCCCHHHHHHHHhhC----
Confidence 2778999999999988872 11245666778889999986443 222233334444333222
Q ss_pred CCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCc
Q 016605 262 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+.+-+....|.-|.. .... ....+.+...|... +.-+-+.. +.. ++.......+ |+.++.|..
T Consensus 153 --~~~vy~~s~~g~tG~~--~~~~---~~~~~~i~~lr~~~-~~pI~vgg---GI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 153 --SGFIYYVSRTGVTGAR--TELP---DDLKELIKRIRKYT-DLPIAVGF---GISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred --CCCEEEEeCCCCCCCc--cCCC---hhHHHHHHHHHhcC-CCcEEEEc---cCCCHHHHHHHHcc-CCEEEECHH
Confidence 3445444444433321 1111 23344455555442 32232322 222 2223445556 998888863
No 254
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=90.52 E-value=9.8 Score=35.01 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.++.+ .++.+.+.|...+.+.+. |.+|.-=++.++.++ ...+++..-...+++.++..-+.+|.|.|.+
T Consensus 66 ~dp~~---ia~~Ye~~GAa~iSVLTd-------~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAISVLTD-------PKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred CCHHH---HHHHHHHhCCeEEEEecC-------ccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 45555 445556678877766552 233333334445565 4577887777789999999999999999887
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
=+..+ +-++..+-.+.+++.|+.+=+- -.+.+|+...++ ++ ...|+++.-. +
T Consensus 136 I~~~L-----------~~~~l~el~~~A~~LGm~~LVE-----Vh~~eEl~rAl~----~g--a~iIGINnRd------L 187 (254)
T COG0134 136 IVAAL-----------DDEQLEELVDRAHELGMEVLVE-----VHNEEELERALK----LG--AKIIGINNRD------L 187 (254)
T ss_pred HHHhc-----------CHHHHHHHHHHHHHcCCeeEEE-----ECCHHHHHHHHh----CC--CCEEEEeCCC------c
Confidence 55444 2223445667889999873221 135566555443 54 6778887632 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP 342 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 342 (386)
... ..+.+. .....-++|+..+.++-+-+. +++.-......|+|.++.|+.+..+.
T Consensus 188 ~tf-~vdl~~----t~~la~~~p~~~~~IsESGI~-~~~dv~~l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 188 TTL-EVDLET----TEKLAPLIPKDVILISESGIS-TPEDVRRLAKAGADAFLVGEALMRAD 243 (254)
T ss_pred chh-eecHHH----HHHHHhhCCCCcEEEecCCCC-CHHHHHHHHHcCCCEEEecHHHhcCC
Confidence 111 112222 222333556544444421121 23334556678999999998665443
No 255
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=90.49 E-value=10 Score=34.49 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC---------CCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM---------LEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~---------l~~e~l~~Lk~ 192 (386)
+++..+.+.++.+... ++-+-+.+|.... ..-+.+.+.++..++.++.+++- |+ .-++.++..++
T Consensus 9 l~~~~~~d~Le~~g~y-ID~lKfg~Gt~~l----~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~ 82 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY-ITFVKFGWGTSAL----IDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDE 82 (237)
T ss_pred CCHHHHHHHHHHhhhh-eeeEEecCceEee----ccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHH
Confidence 4555555555544332 4555555443211 11234777777778878776543 32 24667778899
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-------CCCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 265 (386)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+.+-.- +|. -.+.+++.+.++..-+.| .+
T Consensus 83 lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~ 149 (237)
T TIGR03849 83 LGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--AD 149 (237)
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--Cc
Confidence 9999998865332 236788889999999999875433 222 135567777776666665 55
Q ss_pred eEeeee
Q 016605 266 SVPINA 271 (386)
Q Consensus 266 ~v~~~~ 271 (386)
.|.+-.
T Consensus 150 ~ViiEa 155 (237)
T TIGR03849 150 YVIIEG 155 (237)
T ss_pred EEEEee
Confidence 655543
No 256
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.26 E-value=14 Score=33.73 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-CCChhhH---HHHH-----HHHHHHhh-cCcEEEE----ecCCCC-HHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNF---NQIL-----EYVKDIRD-MGMEVCC----TLGMLE-KHQA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~~~~---~~l~-----~~i~~ik~-~g~~i~~----t~g~l~-~e~l 187 (386)
+.++..+.++.+.+. ++-+-+.-...++ .+.|..- ...+ +.++.+++ ..+++.. ++...+ .+.+
T Consensus 16 ~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 16 NVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred CHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHH
Confidence 678888887777665 7666553222222 1122211 2333 57777774 3445321 232223 4558
Q ss_pred HHHHHhccCeeecc---cCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCC
Q 016605 188 IELKKAGLTAYNHN---LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 188 ~~Lk~aG~~~v~i~---le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+.++++|++.+.+- +|+ .++..+.++.+++.|+.... .+....+.+.+...+....
T Consensus 95 ~~~~~~Gadgvii~dlp~e~-------------~~~~~~~~~~~~~~Gl~~~~--~v~p~T~~e~l~~~~~~~~------ 153 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDY-------------PDDLEKYVEIIKNKGLKPVF--FTSPKFPDLLIHRLSKLSP------ 153 (244)
T ss_pred HHHHHcCCCEEEECCCCCCc-------------HHHHHHHHHHHHHcCCCEEE--EECCCCCHHHHHHHHHhCC------
Confidence 99999999999873 232 34455777889999996533 3333444555555544322
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccccc-ChhHHHhhhhcCccccccCCccccC-C
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLLTT-P 342 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~-~~~~~~~~l~~Gan~~~~g~~~~t~-~ 342 (386)
.+-+....| +|- .. . .....+.+...|.+.++..+-+.. ++ .++.......+|||.++.|..+... .
T Consensus 154 -~~l~msv~~--~~g-~~---~-~~~~~~~i~~lr~~~~~~~i~v~g---GI~~~e~i~~~~~~gaD~vvvGSai~~~~~ 222 (244)
T PRK13125 154 -LFIYYGLRP--ATG-VP---L-PVSVERNIKRVRNLVGNKYLVVGF---GLDSPEDARDALSAGADGVVVGTAFIEELE 222 (244)
T ss_pred -CEEEEEeCC--CCC-CC---c-hHHHHHHHHHHHHhcCCCCEEEeC---CcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 222223333 442 11 1 334455667777776543333332 23 2333344568999999888754321 1
Q ss_pred CCChhHHHHHHHHc
Q 016605 343 NNDFDADQLMFKVL 356 (386)
Q Consensus 343 ~~~~~~~~~~i~~~ 356 (386)
..+.++..++++++
T Consensus 223 ~~~~~~~~~~~~~~ 236 (244)
T PRK13125 223 KNGVESALNLLKKI 236 (244)
T ss_pred hcCHHHHHHHHHHH
Confidence 12355666666543
No 257
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=90.24 E-value=7.5 Score=37.22 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe--cccCCCCC----ChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMG--AAWRDTIG----RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~--~g~~~~~g----e~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
-+++++.+.++...+.|...|-+. ++...... .....+.+..+++.+++.|+.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 468999999999999998877543 21111100 113457788888888888887665543 2345566667777
Q ss_pred Ceeecc
Q 016605 196 TAYNHN 201 (386)
Q Consensus 196 ~~v~i~ 201 (386)
+.+.+.
T Consensus 195 ~~i~H~ 200 (342)
T cd01299 195 DTIEHG 200 (342)
T ss_pred CEEeec
Confidence 766654
No 258
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.04 E-value=3.9 Score=36.34 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
..+.++.++.++.+.+.|++.+-++-- . +..++.|+.+++..-++.+-.|+ ++.+.++...++|.+.+-
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~------t----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLR------T----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 358999999999999999998866531 1 23445555555332245455554 799999999999987654
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
- |.-+. +.++.+++.|+.+-.+. -|..|+..-+ ++| .+.+.+++ ...
T Consensus 82 S-------------P~~~~----~vi~~a~~~~i~~iPG~-----~TptEi~~A~----~~G--a~~vK~FP-----a~~ 128 (201)
T PRK06015 82 S-------------PGTTQ----ELLAAANDSDVPLLPGA-----ATPSEVMALR----EEG--YTVLKFFP-----AEQ 128 (201)
T ss_pred C-------------CCCCH----HHHHHHHHcCCCEeCCC-----CCHHHHHHHH----HCC--CCEEEECC-----chh
Confidence 2 21121 56678899998644333 3677766554 444 45555433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
+.. ...+...+-.+|+.-+- .+|-+ +.+.-...|.+|+.....|.
T Consensus 129 ~GG---------~~yikal~~plp~~~l~-ptGGV--~~~n~~~~l~ag~~~~~ggs 173 (201)
T PRK06015 129 AGG---------AAFLKALSSPLAGTFFC-PTGGI--SLKNARDYLSLPNVVCVGGS 173 (201)
T ss_pred hCC---------HHHHHHHHhhCCCCcEE-ecCCC--CHHHHHHHHhCCCeEEEEch
Confidence 211 13344556677764222 22223 33334566777776555554
No 259
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=90.04 E-value=16 Score=33.87 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHh-hc-CcEE-EEe--cC---
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIR-DM-GMEV-CCT--LG--- 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik-~~-g~~i-~~t--~g--- 180 (386)
+.+.-.+.++.+.+.|++-+-++--..++. ..| ...+.++++++.++ +. .+++ ..+ |-
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 577888888888888988766653222221 111 23467888888888 32 4553 222 11
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.-.++.++.++++|++.+-+ +.-.+++.-+..+.+.+.|+..- .++- ..|.+++.+.+....
T Consensus 102 ~G~e~F~~~~~~aGvdGlIi-------------pDLP~ee~~~~~~~~~~~gl~~I--~lv~-p~t~~~Ri~~i~~~a-- 163 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLII-------------PDLPPEESEELREAAKKHGLDLI--PLVA-PTTPEERIKKIAKQA-- 163 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEE-------------TTSBGGGHHHHHHHHHHTT-EEE--EEEE-TTS-HHHHHHHHHH---
T ss_pred cchHHHHHHHHHcCCCEEEE-------------cCCChHHHHHHHHHHHHcCCeEE--EEEC-CCCCHHHHHHHHHhC--
Confidence 12467899999999998876 22233444455567788998522 2222 335555544443332
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..++.+.......|.. . .-..++.+.+...|.... .++..| ++++...+...+..||+.++.|..+
T Consensus 164 ---~gFiY~vs~~GvTG~~----~-~~~~~l~~~i~~ik~~~~---~Pv~vG-FGI~~~e~~~~~~~~aDGvIVGSa~ 229 (259)
T PF00290_consen 164 ---SGFIYLVSRMGVTGSR----T-ELPDELKEFIKRIKKHTD---LPVAVG-FGISTPEQAKKLAAGADGVIVGSAF 229 (259)
T ss_dssp ---SSEEEEESSSSSSSTT----S-SCHHHHHHHHHHHHHTTS---S-EEEE-SSS-SHHHHHHHHTTSSEEEESHHH
T ss_pred ---CcEEEeeccCCCCCCc----c-cchHHHHHHHHHHHhhcC---cceEEe-cCCCCHHHHHHHHccCCEEEECHHH
Confidence 2233333332222322 1 224566777788887662 233332 3344445666777999999999744
No 260
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=89.95 E-value=2.3 Score=41.49 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 016605 216 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 295 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~ 295 (386)
.+.++..+..+.+++.|-.+..-+-+ |+..+|+..-+....+++ ++ .|+ ..|-||.. ..-..+.+.+.+
T Consensus 203 ApldE~~~Va~~Akk~gkGveaI~~v--GDGyddLI~G~~a~id~~--vD-----vfV-vEGgPFN~-a~dRl~aFakaV 271 (505)
T PF10113_consen 203 APLDEMEEVAELAKKYGKGVEAIMHV--GDGYDDLITGLKACIDMG--VD-----VFV-VEGGPFNR-AKDRLKAFAKAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEe--cCChHHHHHHHHHHHhcC--Cc-----EEE-EeCCCccc-chhHHHHHHHHH
Confidence 37899999999999999877765554 567889999999998886 32 233 35667643 233567788889
Q ss_pred HHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 296 ATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 296 a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
+++|++.|...+--.+. =.+....+|.+|-|.+++|
T Consensus 272 a~sRIL~pGkVVaTNGA----YEDEcRiGLRsGLN~iitG 307 (505)
T PF10113_consen 272 AASRILVPGKVVATNGA----YEDECRIGLRSGLNVIITG 307 (505)
T ss_pred HHheeeecCcEEecCCc----chHHHHHHHhhccceeecc
Confidence 99999888764422211 1355688999999999655
No 261
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.85 E-value=5 Score=35.76 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++-+.++-- . +..++.|+.+++..-++.+-.|. ++.+.++...++|.+.+--
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~------t----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs 86 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR------T----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS 86 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC
Confidence 58999999999999999998877531 1 33455566665432245455554 7999999999999987632
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+. +.++.+++.|+.+-.++ -|..|+..-+ ++| .+.+.+++ ...+
T Consensus 87 -------------P~~~~----~v~~~~~~~~i~~iPG~-----~TptEi~~A~----~~G--a~~vKlFP-----A~~~ 133 (204)
T TIGR01182 87 -------------PGLTP----ELAKHAQDHGIPIIPGV-----ATPSEIMLAL----ELG--ITALKLFP-----AEVS 133 (204)
T ss_pred -------------CCCCH----HHHHHHHHcCCcEECCC-----CCHHHHHHHH----HCC--CCEEEECC-----chhc
Confidence 22121 66788899998644433 3667765543 444 55555543 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.. + ..+...+-.+|+.-+ +.+|=+ ..+.-...|.+|+..+-.|.
T Consensus 134 GG-----~----~yikal~~plp~i~~-~ptGGV--~~~N~~~~l~aGa~~vg~Gs 177 (204)
T TIGR01182 134 GG-----V----KMLKALAGPFPQVRF-CPTGGI--NLANVRDYLAAPNVACGGGS 177 (204)
T ss_pred CC-----H----HHHHHHhccCCCCcE-EecCCC--CHHHHHHHHhCCCEEEEECh
Confidence 11 1 223445556676322 223223 33444677889999886666
No 262
>PRK13753 dihydropteroate synthase; Provisional
Probab=89.66 E-value=6.1 Score=36.96 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
++++.+++.+..+.+.|++-+-++|..+.++.++ ...+++...|+.+++.+.. ++..+...+.++.-.++|++.
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGadi 99 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVGY 99 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCCE
Confidence 6899999999999999998777766433232222 2456677888888865544 455667889999888999887
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 100 IN 101 (279)
T PRK13753 100 LN 101 (279)
T ss_pred EE
Confidence 65
No 263
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=89.64 E-value=20 Score=34.48 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=90.5
Q ss_pred HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe---------cCC---------C------------
Q 016605 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGM---------L------------ 182 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t---------~g~---------l------------ 182 (386)
.+++.|+..|-+---..|..+.-..+++.+++.+++|+.|+.+.+. +|. +
T Consensus 32 ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~y 111 (332)
T PF07745_consen 32 ILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDY 111 (332)
T ss_dssp HHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Confidence 3345788877552111233212357789999999999999886543 221 1
Q ss_pred CHHHHHHHHHhcc--CeeecccCchHHHHhhhCCCCCHHHHHHH----HHHHHHcCCeeeEeEEeec--CCCHHHHHHHH
Q 016605 183 EKHQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLET----LKHVREAGINVCSGGIIGL--GEAEEDRVGLL 254 (386)
Q Consensus 183 ~~e~l~~Lk~aG~--~~v~i~le~~~~~~~~i~~~~s~~~~l~~----i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l 254 (386)
+.+.+..|+++|+ +.|.++=|.-...+--..+...++...+- ++.+++.+-. +-+|+-+ +.+.+.....+
T Consensus 112 T~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~~~~~~~~~~~~f 189 (332)
T PF07745_consen 112 TKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLANGGDNDLYRWFF 189 (332)
T ss_dssp HHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES-TTSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEECCCCchHHHHHHH
Confidence 5677789999994 56777766532222112223456554443 3444443322 2233323 66677788888
Q ss_pred HHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcc
Q 016605 255 HTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR 313 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~ 313 (386)
+.++..+.+.|.++++-| | +.+. +...+...+...+.-+.+.++-...++
T Consensus 190 ~~l~~~g~d~DviGlSyY-P-----~w~~---~l~~l~~~l~~l~~ry~K~V~V~Et~y 239 (332)
T PF07745_consen 190 DNLKAAGVDFDVIGLSYY-P-----FWHG---TLEDLKNNLNDLASRYGKPVMVVETGY 239 (332)
T ss_dssp HHHHHTTGG-SEEEEEE--S-----TTST----HHHHHHHHHHHHHHHT-EEEEEEE--
T ss_pred HHHHhcCCCcceEEEecC-C-----CCcc---hHHHHHHHHHHHHHHhCCeeEEEeccc
Confidence 889888766788888654 4 2221 566666666654443455444444444
No 264
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=89.22 E-value=16 Score=32.84 Aligned_cols=183 Identities=20% Similarity=0.133 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++..-.....|.+.+ .++++.+. ..++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVN----LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCc----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 33445556677899998875422111122223 33444443 23667778888899999999999999998776443
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcC---CeeeEeEE------eec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAG---INVCSGGI------IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~G---i~v~~~~i------~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
.. +++...+. +++.| +-+..++- .|. ..+..+..++++.+.+.+ ++.+.++....
T Consensus 105 l~----------d~~~~~~~---~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~ 169 (230)
T TIGR00007 105 VE----------NPDLVKEL---LKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR 169 (230)
T ss_pred hh----------CHHHHHHH---HHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC
Confidence 31 22333333 33344 22333322 222 112235566777777775 66666655433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.|+. ..++.+.+.+ .+... +..+-..+|-.+. .+. ...+..||+.++.|..+.
T Consensus 170 -~g~~----~g~~~~~i~~----i~~~~-~ipvia~GGi~~~-~di-~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 170 -DGTL----SGPNFELTKE----LVKAV-NVPVIASGGVSSI-DDL-IALKKLGVYGVIVGKALY 222 (230)
T ss_pred -CCCc----CCCCHHHHHH----HHHhC-CCCEEEeCCCCCH-HHH-HHHHHCCCCEEEEeHHHH
Confidence 2332 1223332222 22222 2222233332222 233 345678999998876443
No 265
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=88.93 E-value=19 Score=33.13 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|+..+.+.+..+..+| =++.++.+++ ..+++.......++.++.+-+.+|.|.|.+-+..+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~G-------s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L- 135 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGG-------SLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRIL- 135 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCC-------CHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC-
Confidence 34455677788888876553322233 2233344443 36778778888999999999999999997644332
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+.++..+-++.+++.|+.+=+- -.|.+|+...+ +.+ ++.++++.-.. .| + ..
T Consensus 136 ----------~~~~l~~l~~~a~~lGle~LVE-----Vh~~~El~~a~----~~g--a~iiGINnRdL--~t-~----~v 187 (247)
T PRK13957 136 ----------TPSQIKSFLKHASSLGMDVLVE-----VHTEDEAKLAL----DCG--AEIIGINTRDL--DT-F----QI 187 (247)
T ss_pred ----------CHHHHHHHHHHHHHcCCceEEE-----ECCHHHHHHHH----hCC--CCEEEEeCCCC--cc-c----eE
Confidence 3345556678889999973221 23666665543 344 67788876432 11 1 12
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+.....+ ..-++|+..+.++-+ ++....+...+..++|.+..|+.+..+
T Consensus 188 d~~~~~~----L~~~ip~~~~~IsES--GI~t~~d~~~l~~~~davLvG~~lm~~ 236 (247)
T PRK13957 188 HQNLVEE----VAAFLPPNIVKVGES--GIESRSDLDKFRKLVDAALIGTYFMEK 236 (247)
T ss_pred CHHHHHH----HHhhCCCCcEEEEcC--CCCCHHHHHHHHHhCCEEEECHHHhCC
Confidence 3333333 234567655556532 222222333344459999999866654
No 266
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=2.2 Score=41.28 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eEeEEeecCCCHHHHHHHHHHHhc
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+-+.++...++|+|.|.+|...+ -+.+. ...+.+++.+.++.+|++|.++ .++.+. +.+..+.+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~-~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLL-HNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEecccc-ccchhhHHHHHHHHHHH
Confidence 46778888888999999998743 22111 2357889999999999999974 444443 46667788999999999
Q ss_pred CCCCCCeEee
Q 016605 260 LPTHPESVPI 269 (386)
Q Consensus 260 l~~~~~~v~~ 269 (386)
+| ++.+.+
T Consensus 91 ~G--vDaviv 98 (347)
T COG0826 91 LG--VDAVIV 98 (347)
T ss_pred cC--CCEEEE
Confidence 97 555544
No 267
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=88.66 E-value=21 Score=33.30 Aligned_cols=135 Identities=24% Similarity=0.334 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC--C----------------
Q 016605 122 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--L---------------- 182 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~--l---------------- 182 (386)
.+++.+.+.-+++.+ .|+-.+.+.+ +|. -.-+++++++.+..+. .++++..|+ .
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgT--RPD----Clpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGT--RPD----CLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecC--CCC----CCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHH
Confidence 456666555555544 4555555543 443 3447788888887754 455444443 2
Q ss_pred CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CC--------------C
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GE--------------A 246 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-ge--------------t 246 (386)
-.+.++++++.|++.+.+-+-++ |+.++++.+++++.+.+.|+. +..+.+.-+ |- +
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GL--------PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGL--------PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC--------CCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 23445556666666555444332 467899999999999999987 888777755 53 3
Q ss_pred HHHHHHH-HHHHhcCCCCCCeEeeeeeee
Q 016605 247 EEDRVGL-LHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 247 ~ed~~~~-l~~l~~l~~~~~~v~~~~f~P 274 (386)
.+|-+++ .+++..+ +..+.++.+.-
T Consensus 242 ~eeYv~~~~d~le~l---pp~vviHRitg 267 (312)
T COG1242 242 LEEYVELVCDQLEHL---PPEVVIHRITG 267 (312)
T ss_pred HHHHHHHHHHHHHhC---CcceEEEEecC
Confidence 4555554 4666666 56777888764
No 268
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=88.52 E-value=24 Score=33.85 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc-EEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM-EVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~-~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+.++.. ... + ...+..+.+...+. .-.+..+....+.++...++|++.+.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHP---AAS-K----QSRIDIEIIASLGLKANIVTHIRCRLDDAKVAVELGVDGID 87 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC---CCC-H----HHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHCCcCEEE
Confidence 378999999999999999988876541 111 1 11222333332211 11222233346677788888998877
Q ss_pred cccCch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 200 HNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 200 i~le~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+..-.. -........ ....+++...++.+++.|+.+...+.-..-...+++.+..+.+..++ ++.+.+-
T Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g--~~~i~~~------ 159 (344)
T TIGR02146 88 IFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFG--VDRVGIA------ 159 (344)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCC--CCEEEEc------
Confidence 644222 222222222 12355777889999999998888777666667788899999888885 5553221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc--ccChhHHHhhhhcCcccc
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV--RFSMPEQALCFLAGANSI 332 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~--~~~~~~~~~~l~~Gan~~ 332 (386)
.|.. ...+.++...+...+...+...+.+.+ .. .+.-.....++.+||..+
T Consensus 160 dt~g----~~~p~~v~~~v~~~~d~~~~~~~~~H~-Hn~~g~avant~~al~~ga~~~ 212 (344)
T TIGR02146 160 DTVG----KAAPRQVYELIRTVVRVVPGVDIELHA-HNDTGCAVANAYNAIEGGATIV 212 (344)
T ss_pred CCCC----cCCHHHHHHHHHHHHHhCCCCeEEEEe-cCCCCHHHHHHHHHHHcCCCEE
Confidence 2221 123445555555555555543222211 11 111223456778887765
No 269
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=88.24 E-value=11 Score=33.99 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....|.+. -++.++.+. ..++++.+..|..+.+.++++.++|++.+.++-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~----~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPV----NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcc----cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 3444555666789999887653211112222 344555554 34678888889999999999999999998876544
Q ss_pred h
Q 016605 205 S 205 (386)
Q Consensus 205 ~ 205 (386)
+
T Consensus 107 l 107 (233)
T PRK00748 107 V 107 (233)
T ss_pred H
Confidence 4
No 270
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=88.17 E-value=19 Score=32.43 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe----cCCC-CHHH---HHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML-EKHQ---AIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~l-~~e~---l~~Lk~a 193 (386)
.+.++|.+.++++.+.|+..+|+. |.+.+...+. ++..++.+++- .|.. .... .+...+.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~---------p~~v~~a~~~---l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~ 86 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN---------PSYVKLAAEL---LKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIAN 86 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------HHHHHHHHHH---hCCCCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence 789999999999999999988873 3333333333 34445554433 2332 2222 3344456
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
|.+.+-+-+.-. .+ ..++|+.+.+-++.++++--..-.-+|+=. --+.+++....+.+.+.| ++++..
T Consensus 87 GA~EiD~Vin~~-----~~-~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKT--- 155 (221)
T PRK00507 87 GADEIDMVINIG-----AL-KSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKT--- 155 (221)
T ss_pred CCceEeeeccHH-----Hh-cCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEc---
Confidence 888777544322 11 134688888888888875212233444433 347788999999998886 664433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccccChhHHHhhhhcCcccc
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+|-+. ....+.+....+ +...+ +..+..++|-.++ +.....+.+||+.+
T Consensus 156 ----sTG~~-~~gat~~~v~~m----~~~~~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 156 ----STGFS-TGGATVEDVKLM----RETVGPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCCCC-CCCCCHHHHHHH----HHHhCCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 22221 122455543333 23333 3344555543332 33466778999988
No 271
>PLN02591 tryptophan synthase
Probab=88.10 E-value=14 Score=34.11 Aligned_cols=80 Identities=9% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC----------------------CCCCh-hhHHHHHHHHHHHhhc-CcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD----------------------TIGRK-TNFNQILEYVKDIRDM-GMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~----------------------~~ge~-~~~~~l~~~i~~ik~~-g~~i~~ 177 (386)
+++||..+..+.+.+.|+..+.+++...+ ..|.. ..-+.+.+.++.+|+. +.++++
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 78899988888888888887766532111 11211 1234566667777753 666777
Q ss_pred ecCCCCHHHHHHHHHhccCeeecc
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
-.|..+++.++.+.++|.|.+-++
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEEC
Confidence 778888888888888888887764
No 272
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=88.08 E-value=9.6 Score=37.27 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=50.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE----EEEecCC-----CCHHHHHH
Q 016605 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME----VCCTLGM-----LEKHQAIE 189 (386)
Q Consensus 119 ~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~----i~~t~g~-----l~~e~l~~ 189 (386)
|+..+-|-|.+.++.+.++|++-|-+... .+ ...++...++.+|+.|.+ ++.+... ...+.+++
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA----lN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ake 164 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA----LN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKE 164 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh----cc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHH
Confidence 44456677777888889999987766432 22 345677778888877665 2333221 23667788
Q ss_pred HHHhccCeeec
Q 016605 190 LKKAGLTAYNH 200 (386)
Q Consensus 190 Lk~aG~~~v~i 200 (386)
|.+.|+|+|.+
T Consensus 165 l~~~g~DSIci 175 (472)
T COG5016 165 LLEMGVDSICI 175 (472)
T ss_pred HHHcCCCEEEe
Confidence 88999999998
No 273
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.06 E-value=10 Score=31.22 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++++++.+. +.+.+-+++.+-. ....+.+.++++.+++.+.. + .+--|....+..+.|+++|++.+.
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 57888876654 5677777776521 13456677777777766542 2 233566677788999999998776
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 111 ~ 111 (132)
T TIGR00640 111 G 111 (132)
T ss_pred C
Confidence 4
No 274
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.56 E-value=5.2 Score=40.50 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
+++.+.++.+.+.|++.+++-.. .|.+ +.+.++++.+|+. ++++..-| ..+.+..+.|.++|+|.|.+++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a----~g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA----HGHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC----CCCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 46677788888899998887442 1333 7788999999865 55655522 4799999999999999999877
Q ss_pred Cch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 203 e~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
-.. .-+...+.. .....-.+++.+.+++.|+++-++ |=-.+..|+.+-+. +| .+.+.+..+
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 554 211111111 124666778888888887663332 11235666666553 33 455555444
No 275
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.55 E-value=19 Score=31.57 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEe--cCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCT--LGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t--~g~l~~e~l~~Lk~aG~~~ 197 (386)
.+.|+..+.++.+.+. ++-+-++. +.....=.+.++.+++. ++.+... ........++.+.++|.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~--------~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGT--------PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 5788999999888876 76654421 22222225666666643 4443222 1122234578899999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..++. .+...+.++.+++.|+.+...+ ++ -.|.+++.. +...+ ++.+.+++-.. ++
T Consensus 81 i~~h~~~~------------~~~~~~~i~~~~~~g~~~~v~~-~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~ 139 (202)
T cd04726 81 VTVLGAAP------------LSTIKKAVKAAKKYGKEVQVDL-IG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQ 139 (202)
T ss_pred EEEEeeCC------------HHHHHHHHHHHHHcCCeEEEEE-eC-CCCHHHHHH----HHHCC--CCEEEEcCccc-cc
Confidence 98755442 1223356677788887654322 22 345666654 33333 56665532110 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+ .. .....+.+.++... ++..+-..+| .+++.-...+.+||+.+..|..+
T Consensus 140 ~-~~--~~~~~~~i~~~~~~-----~~~~i~~~GG---I~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 140 A-AG--GWWPEDDLKKVKKL-----LGVKVAVAGG---ITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-cC--CCCCHHHHHHHHhh-----cCCCEEEECC---cCHHHHHHHHhcCCCEEEEeehh
Confidence 1 11 12233333322221 3333333332 23444567788999999888643
No 276
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.11 E-value=22 Score=31.87 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++.++.++.+.+.|++-+-++- + . ++-++.|+.+++..-++.+-.|. ++.+.++...++|.+.+..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~----~----~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--R----T----PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--C----C----ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 6899999999999999998776652 1 1 23445556665332234444444 6889999999999987653
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.-+. +.++.+++.|+.+- .|. -|+.|+. .+.++| .+.+.+
T Consensus 94 -------------P~~~~----~vi~~a~~~~i~~i----PG~-~TptEi~----~a~~~G--a~~vKl 134 (212)
T PRK05718 94 -------------PGLTP----PLLKAAQEGPIPLI----PGV-STPSELM----LGMELG--LRTFKF 134 (212)
T ss_pred -------------CCCCH----HHHHHHHHcCCCEe----CCC-CCHHHHH----HHHHCC--CCEEEE
Confidence 22222 56677777776532 232 3566643 345665 556655
No 277
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.97 E-value=15 Score=34.05 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHc
Q 016605 122 MTKDAVMQAAQKAKEA 137 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~ 137 (386)
++.+++++.++.+.+.
T Consensus 76 ~t~~~~lel~~~~r~~ 91 (265)
T COG0159 76 VTLEDTLELVEEIRAK 91 (265)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3444555555544433
No 278
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=86.66 E-value=28 Score=32.57 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhh--cCcEEEEecCCCC----HHHHHHHHHhccCeeecccCchH-HHHhhhCCCCCHHHHHHHHHHHHH
Q 016605 158 FNQILEYVKDIRD--MGMEVCCTLGMLE----KHQAIELKKAGLTAYNHNLDTSR-EFYSKIITTRSYDERLETLKHVRE 230 (386)
Q Consensus 158 ~~~l~~~i~~ik~--~g~~i~~t~g~l~----~e~l~~Lk~aG~~~v~i~le~~~-~~~~~i~~~~s~~~~l~~i~~a~~ 230 (386)
.+.+++.++..++ .+..+.++.+-.+ .+.++.+.++|++.+.+++-... ..... -..+.+...+.++.+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLLKAVKA 159 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHHHHHHH
Confidence 3455555554443 2344444432222 33355556667777776654321 00000 02356666677777776
Q ss_pred c-CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec---------C--CCCCCCCCCC-CHHHHHHHHHH
Q 016605 231 A-GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV---------K--GTPLQDQKPV-EIWEMIRMIAT 297 (386)
Q Consensus 231 ~-Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~---------~--gT~l~~~~~~-s~~e~~~~~a~ 297 (386)
. ++.+.+.+- .+.+.++..++++.+.+.| ++.+.+..-.+- + .+........ .....++.+..
T Consensus 160 ~~~~pv~vKl~--~~~~~~~~~~~a~~l~~~G--ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 160 AVDIPLLVKLS--PYFDLEDIVELAKAAERAG--ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred ccCCCEEEEeC--CCCCHHHHHHHHHHHHHcC--CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 5 444333322 2457788999999999887 677776532210 0 0111111100 01112444555
Q ss_pred HHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 298 ARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 298 ~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+..++....-+..|-+. ..+.....+.+||+.++.+..
T Consensus 236 i~~~~~~~ipiia~GGI~-~~~da~~~l~~GAd~V~vg~a 274 (289)
T cd02810 236 LAARLQLDIPIIGVGGID-SGEDVLEMLMAGASAVQVATA 274 (289)
T ss_pred HHHhcCCCCCEEEECCCC-CHHHHHHHHHcCccHheEcHH
Confidence 555554212223333333 233346677899999977753
No 279
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=86.65 E-value=16 Score=33.62 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--C--CCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--G--MLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--g--~l~~e~l~~Lk~aG~~~v 198 (386)
..+.+.+.++.+++.|++.|+++.= ++ .| ....+.+.++++..+.. ++..+- . .-..+.++.|.+.|+++|
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L-~~-dg-~vD~~~~~~Li~~a~~~--~vTFHRAfD~~~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL-DV-DG-HVDMPRMRKIMAAAGPL--AVTFHRAFDMCANPLNALKQLADLGVARI 145 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE-CC-CC-CcCHHHHHHHHHHhcCC--ceEEechhhccCCHHHHHHHHHHcCCCEE
Confidence 4566777788888999999987542 22 12 25667777777777543 332221 1 123567899999999998
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHH
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
.-+= ...+..+-++.++.+.+ ++ .. . +|.|-|-+.+.+.++
T Consensus 146 LTSG-----------g~~~a~~g~~~L~~lv~~a~-~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 146 LTSG-----------QQQDAEQGLSLIMELIAASD-GP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred ECCC-----------CCCCHHHHHHHHHHHHHhcC-CC-E-EEeCCCCCHHHHHHH
Confidence 7531 11234444555555544 33 21 2 888889998888776
No 280
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=86.64 E-value=27 Score=34.20 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+.+.++++++++.++.+.+..+. ...+.++.+.++|++.+.+.--+....| ..+..+|.++. +..++.+++|-
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~--~sg~~~p~~l~---~~i~~~~IPVI 192 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEH--VSTSGEPLNLK---EFIGELDVPVI 192 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc--cCCCCCHHHHH---HHHHHCCCCEE
Confidence 466778888888766554443332 4578899999999999987543332222 12233565444 34455676653
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCc---cee-
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVMPKA---MVR- 308 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~---~i~- 308 (386)
.|-..+.++..+.++ .| ++.|.+. ..++.... ...+....+.+..+..+.++... .++
T Consensus 193 ----~G~V~t~e~A~~~~~----aG--aDgV~~G----~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpV 258 (369)
T TIGR01304 193 ----AGGVNDYTTALHLMR----TG--AAGVIVG----PGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHV 258 (369)
T ss_pred ----EeCCCCHHHHHHHHH----cC--CCEEEEC----CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 344556777665553 44 5555421 11111111 11222223333333334443322 133
Q ss_pred ecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+..|-+.-+.+. ..+|.+||+.++.|..+
T Consensus 259 IAdGGI~tg~di-~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 259 IADGGIETSGDL-VKAIACGADAVVLGSPL 287 (369)
T ss_pred EEeCCCCCHHHH-HHHHHcCCCEeeeHHHH
Confidence 344444444443 77899999999766543
No 281
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=86.59 E-value=42 Score=34.62 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCH-----------HHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIE 189 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~-----------e~l~~ 189 (386)
....+.++.++.+.+.|++++++.--.....+ +...+..+++|+++. +..+++.+--|..+. |.+++
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHH
Confidence 34556677788888999999987532110001 223456788888876 457777777777654 78999
Q ss_pred HHHhccCeeecccCch--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----------------------------
Q 016605 190 LKKAGLTAYNHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGG---------------------------- 239 (386)
Q Consensus 190 Lk~aG~~~v~i~le~~--~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~---------------------------- 239 (386)
+.++|++.|.++-.++ ++.|-.-....+++-+-++.+..-+.-+-+.++.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999986665 2222221223344444333333211111122221
Q ss_pred ----Eeec---CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCc
Q 016605 240 ----IIGL---GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 312 (386)
Q Consensus 240 ----i~Gl---get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g 312 (386)
++-. ..+.-+..+.++.+.++| ...+-++.. -..||.- .++.+- .+.++.+ . +..+-.++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~t~i-d~DGt~~----G~d~~l-~~~v~~~---~-~ipviasGG 490 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELG--AGEILLNCI-DCDGQGK----GFDIEL-VKLVSDA---V-TIPVIASSG 490 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEEeec-ccccccc----CcCHHH-HHHHHhh---C-CCCEEEECC
Confidence 1111 123456677777778886 545544432 2335532 223332 2322211 1 212233433
Q ss_pred ccccChhHHHhhhh-cCccccccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 313 RVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 313 ~~~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
--+. .+. ...|. .||+....+. +..-...+..+.+..+++.|+..
T Consensus 491 ~g~~-~d~-~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 491 AGTP-EHF-SDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCCH-HHH-HHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 2222 222 33443 5677765554 33345678999999999999543
No 282
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=86.45 E-value=16 Score=33.07 Aligned_cols=127 Identities=11% Similarity=0.131 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC--------CCHHHHHH----H
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE----L 190 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~--------l~~e~l~~----L 190 (386)
+.+.....++++.+.|+..+.++--... ..+....+.+.++.+..++.++++.++... ++.+.+.+ .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 4455566677788889988755431110 011123334444444445668776554322 34455554 5
Q ss_pred HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEee-c-CCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 191 KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIG-L-GEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 191 k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~G-l-get~ed~~~~l~~l~~l~~~~~~v 267 (386)
.++|.|.|-++..+ + ++.++.+.+. ++++ ++.| . ..|.++..+.+..+.+.| .+.+
T Consensus 153 ~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~gv 211 (235)
T cd00958 153 AELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AAGV 211 (235)
T ss_pred HHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--CcEE
Confidence 67799988874211 2 2334444432 3443 3333 3 257888888888888887 5555
Q ss_pred eeee
Q 016605 268 PINA 271 (386)
Q Consensus 268 ~~~~ 271 (386)
.+..
T Consensus 212 ~vg~ 215 (235)
T cd00958 212 AVGR 215 (235)
T ss_pred Eech
Confidence 4433
No 283
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=86.34 E-value=7.9 Score=34.24 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++-+-++-- .| ..++.|+.+++..-++.+-.|+ ++.+.++...++|.+.+--
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~------t~----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR------TP----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT------ST----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC------Cc----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 57789999999999999988777531 12 2345555555322234444454 7999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+ -+.++.+++.|+.+-.+++ |..|+..-+ ++| .+.+.+ +|...+
T Consensus 87 -------------P~~~----~~v~~~~~~~~i~~iPG~~-----TptEi~~A~----~~G--~~~vK~-----FPA~~~ 133 (196)
T PF01081_consen 87 -------------PGFD----PEVIEYAREYGIPYIPGVM-----TPTEIMQAL----EAG--ADIVKL-----FPAGAL 133 (196)
T ss_dssp -------------SS------HHHHHHHHHHTSEEEEEES-----SHHHHHHHH----HTT---SEEEE-----TTTTTT
T ss_pred -------------CCCC----HHHHHHHHHcCCcccCCcC-----CHHHHHHHH----HCC--CCEEEE-----ecchhc
Confidence 1111 1567888999997555444 677766554 444 444444 334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. -- ..+...+-.+|+..+ +.+|-++. +.-...|.+|+..+..|.
T Consensus 134 G------G~---~~ik~l~~p~p~~~~-~ptGGV~~--~N~~~~l~ag~~~vg~Gs 177 (196)
T PF01081_consen 134 G------GP---SYIKALRGPFPDLPF-MPTGGVNP--DNLAEYLKAGAVAVGGGS 177 (196)
T ss_dssp T------HH---HHHHHHHTTTTT-EE-EEBSS--T--TTHHHHHTSTTBSEEEES
T ss_pred C------cH---HHHHHHhccCCCCeE-EEcCCCCH--HHHHHHHhCCCEEEEECc
Confidence 2 12 233444556776322 23332333 334667788988876665
No 284
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=86.26 E-value=24 Score=31.54 Aligned_cols=193 Identities=15% Similarity=0.067 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCC--HHHHHHHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLE--KHQAIELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~--~e~l~~Lk~aG~~ 196 (386)
.++.++.++.++++.+. +.-+-. |-|+...+=.+.++.+|+...+ +....-+.+ .=..+...++|.|
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEv--------GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd 82 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEV--------GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD 82 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEe--------CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCC
Confidence 37888999888887765 332222 2366666777888888865322 333322222 3346677889999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.+.- -.+.+....+++.+++.|..+-+.++- .. ++.+-.+++++++ ++.+.++.=+-
T Consensus 83 ~~tV~g------------~A~~~TI~~~i~~A~~~~~~v~iDl~~--~~---~~~~~~~~l~~~g--vd~~~~H~g~D-- 141 (217)
T COG0269 83 WVTVLG------------AADDATIKKAIKVAKEYGKEVQIDLIG--VW---DPEQRAKWLKELG--VDQVILHRGRD-- 141 (217)
T ss_pred EEEEEe------------cCCHHHHHHHHHHHHHcCCeEEEEeec--CC---CHHHHHHHHHHhC--CCEEEEEeccc--
Confidence 998732 224556678899999999988887763 23 4555566667676 66666654221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
....... ++.+. +. ..+...+ ...+.+.+ ++.++.-......|++-++.|. ..| ...++.+..+.++
T Consensus 142 -~q~~G~~-~~~~~-l~---~ik~~~~~g~~vAVaG---GI~~~~i~~~~~~~~~ivIvGr-aIt-~a~dp~~~a~~~~ 209 (217)
T COG0269 142 -AQAAGKS-WGEDD-LE---KIKKLSDLGAKVAVAG---GITPEDIPLFKGIGADIVIVGR-AIT-GAKDPAEAARKFK 209 (217)
T ss_pred -HhhcCCC-ccHHH-HH---HHHHhhccCceEEEec---CCCHHHHHHHhcCCCCEEEECc-hhc-CCCCHHHHHHHHH
Confidence 1111211 12222 22 2222222 23344554 3445544556667888888886 333 2344444444443
No 285
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.26 E-value=28 Score=32.30 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHhh-cCcE-EEEe--cC---C
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRD-MGME-VCCT--LG---M 181 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik~-~g~~-i~~t--~g---~ 181 (386)
+.+.-.+.++.+.+.|++-+-++--..+|. ..| ...+.++++++++++ ..++ +..+ |- .
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 567778888888889998777653222221 112 123467888888874 3444 2222 11 1
Q ss_pred CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 182 LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 182 l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
-.++.++.++++|++.+.+- .-.+++.-+.++.+++.|+... +++...-+.+.+....+...
T Consensus 107 G~e~F~~~~~~aGvdgviip-------------DLP~ee~~~~~~~~~~~gi~~I--~lv~PtT~~eri~~i~~~a~--- 168 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIP-------------DLPYEESDYLISVCNLYNIELI--LLIAPTSSKSRIQKIARAAP--- 168 (263)
T ss_pred CHHHHHHHHHHcCCeEEEec-------------CCCHHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHHHhCC---
Confidence 23778999999999998872 2245666677788899998533 33333334444444433332
Q ss_pred CCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCcc
Q 016605 262 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~~ 338 (386)
-++.+.. .+|+--.. ..-..++.+.+...|..... ++.-| +++. ++........||+.++.|..+
T Consensus 169 ---gFIY~vS---~~GvTG~~--~~~~~~~~~~i~~ir~~t~~---Pi~vG-FGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 169 ---GCIYLVS---TTGVTGLK--TELDKKLKKLIETIKKMTNK---PIILG-FGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred ---CcEEEEc---CCCCCCCC--ccccHHHHHHHHHHHHhcCC---CEEEE-CCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 1233322 34433211 11234456666767764422 22222 2333 333344566889999999754
No 286
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=86.15 E-value=25 Score=33.19 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcCcEEEEecCC-----C----------CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHH
Q 016605 159 NQILEYVKDIRDMGMEVCCTLGM-----L----------EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLE 223 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~i~~t~g~-----l----------~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~ 223 (386)
..+..-|+.+|..|.++.++.|- + -....+.+..+|++.|-+.+|... .......+++.+
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~~ 128 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRAQ 128 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHHH
Confidence 46677788888878777666431 1 123455667789999999998852 111234678888
Q ss_pred HHHHHHHc--CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 224 TLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 224 ~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+|+.+++. ++.+..++-... |-+.+ =.++++.++..|+.++.|.++.+-
T Consensus 129 al~~Lq~~~p~l~vs~Tlp~~p~gl~~~-g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 129 ALALLQKEYPDLKISFTLPVLPTGLTPD-GLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHCCCcEEEEecCCCCCCCChh-HHHHHHHHHHcCCCcceeeeeeec
Confidence 99988876 555666554433 44432 245777777777556777776654
No 287
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=86.04 E-value=41 Score=35.81 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|+.-+.+.+......|. +++ ++.++ ...+++....-.+++.++.+-+.+|.|.|.+-+..+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs---~~~----l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L- 144 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGS---LDD----FDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL- 144 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCC---HHH----HHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc-
Confidence 444556677888888776532222232 222 33333 246777777778899999999999999998755444
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+.++..+-++.+++.|+.+=+- -.|.+|+...+ +.+ ++.|+++.-.. ... ..
T Consensus 145 ----------~~~~l~~l~~~a~~lGme~LvE-----vh~~~el~~a~----~~g--a~iiGINnRdL------~tf-~v 196 (695)
T PRK13802 145 ----------DDAQLKHLLDLAHELGMTVLVE-----THTREEIERAI----AAG--AKVIGINARNL------KDL-KV 196 (695)
T ss_pred ----------CHHHHHHHHHHHHHcCCeEEEE-----eCCHHHHHHHH----hCC--CCEEEEeCCCC------ccc-ee
Confidence 1234446678889999973221 24666665544 344 67788876432 111 12
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
+.....++ +-++|+..+.++-+=+.- +..-.....+|+|.++.|+.+..+ .++...++-+..+|
T Consensus 197 d~~~t~~L----~~~ip~~~~~VsESGI~~-~~d~~~l~~~G~davLIGeslm~~--~dp~~~~~~l~~~~ 260 (695)
T PRK13802 197 DVNKYNEL----AADLPDDVIKVAESGVFG-AVEVEDYARAGADAVLVGEGVATA--DDHELAVERLVKAG 260 (695)
T ss_pred CHHHHHHH----HhhCCCCcEEEEcCCCCC-HHHHHHHHHCCCCEEEECHHhhCC--CCHHHHHHHHHhcc
Confidence 33333333 234566555555321221 222344557899999999876655 34555555556555
No 288
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=86.02 E-value=6.1 Score=35.34 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhh--cCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~--~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+.++.++.+++..+.|++-+-+.++.+.++. +...++++..+++.+++ .++.+++. ...++.++.--++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--T~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--TFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--CCCHHHHHHHHHcCc
Confidence 56788888899999999988888765433322 22456788888888875 35555443 345666666666676
Q ss_pred Ceee
Q 016605 196 TAYN 199 (386)
Q Consensus 196 ~~v~ 199 (386)
+.++
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6554
No 289
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=85.93 E-value=29 Score=32.47 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCC-CCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHH
Q 016605 175 VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVG 252 (386)
Q Consensus 175 i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~-~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~ 252 (386)
+.+.+|..+.-..+..+++|...+..+=-+....+-.=..+ .+++++++.++.+.++ .+++.+++=-|+|+ ...+.+
T Consensus 19 ~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvar 97 (289)
T COG2513 19 PLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVAR 97 (289)
T ss_pred CEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHH
Confidence 34557778888899999999998886533331111111112 2699999998887765 89999999999998 889999
Q ss_pred HHHHHhcCCCCCCeEeee-eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--cceeecC---cccccCh--hHHHhh
Q 016605 253 LLHTLATLPTHPESVPIN-ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLSA---GRVRFSM--PEQALC 324 (386)
Q Consensus 253 ~l~~l~~l~~~~~~v~~~-~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~--~~i~i~~---g~~~~~~--~~~~~~ 324 (386)
++..+.+.| +.-+.+- ...|..--.+.+.+..+.+++.+.+..++..-++ ..|..-+ .+.++.. .-....
T Consensus 98 tV~~~~~aG--~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 98 TVRELEQAG--AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHcC--cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 999998887 4444442 2223221123455668899999999888877653 2221111 1112221 123445
Q ss_pred hhcCccccccCC------------cc-------ccCCCCChhHHHHHHHHcCCCc
Q 016605 325 FLAGANSIFTGE------------KL-------LTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 325 l~~Gan~~~~g~------------~~-------~t~~~~~~~~~~~~i~~~G~~p 360 (386)
..+||+.++..- .+ .|..+.++.-....++++|+.-
T Consensus 176 ~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~ 230 (289)
T COG2513 176 VEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKR 230 (289)
T ss_pred HHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceE
Confidence 679999997541 01 1223444444456688888754
No 290
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.83 E-value=8.1 Score=35.91 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc----------------------CCCCCC-hhhHHHHHHHHHHHhhc-CcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGR-KTNFNQILEYVKDIRDM-GMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~----------------------~~~~ge-~~~~~~l~~~i~~ik~~-g~~i~~ 177 (386)
+++||..+..+.+.+.|+..+.+..-. ....|. ....+.+.++++.+|+. +.++++
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 678888888888888887766655321 111122 23346677777777753 666777
Q ss_pred ecCCCCHHHHHHHHHhccCeeecc
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
--|..+++.++.+.++|.|.+-++
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEEC
Confidence 778888999999999998888775
No 291
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=85.75 E-value=21 Score=31.88 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=69.6
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe-cCCC-CHHHHHHHHHhccCeeec--ccCchH
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGML-EKHQAIELKKAGLTAYNH--NLDTSR 206 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t-~g~l-~~e~l~~Lk~aG~~~v~i--~le~~~ 206 (386)
++.+.+.|.+-+.+.|. ...+.+...++..++.|.++.+. .|.. .++..+.|+++|++.+.+ +.|.-
T Consensus 73 ~~ma~~aGAd~~tV~g~--------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q- 143 (217)
T COG0269 73 ARMAFEAGADWVTVLGA--------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQ- 143 (217)
T ss_pred HHHHHHcCCCEEEEEec--------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHh-
Confidence 55667889988777663 23577889999999988886443 2333 466677777799998764 44431
Q ss_pred HHHhhhCCCCCH-HHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 207 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 207 ~~~~~i~~~~s~-~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
..+.+| .+.++.++.+.+.|+.+.+.. |-+++++...
T Consensus 144 ------~~G~~~~~~~l~~ik~~~~~g~~vAVaG----GI~~~~i~~~ 181 (217)
T COG0269 144 ------AAGKSWGEDDLEKIKKLSDLGAKVAVAG----GITPEDIPLF 181 (217)
T ss_pred ------hcCCCccHHHHHHHHHhhccCceEEEec----CCCHHHHHHH
Confidence 135566 678888999999887755421 4566665443
No 292
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=85.40 E-value=66 Score=36.66 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
-+.+++++.+++..+.|+.-+-+..| .+...+...+.+++..|..+++ ..+++++ .....+.++.--+. |...|
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g-~~~id~~eem~rvv~~i~~~~~~~~vPlsI--DS~~~~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMD-EGMLDSEAAMVRFLNLIASEPDIARVPIMI--DSSKWEVIEAGLKCIQGKGIV 457 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHhhhccCCceEEE--eCCcHHHHHHHHhhcCCCCEE
Confidence 57899999999999999977666543 2222334556667776666554 2555543 34567777766665 76655
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHHHHHHHHH----h-cCCCCCCeEeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTL----A-TLPTHPESVPIN 270 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~~l----~-~l~~~~~~v~~~ 270 (386)
| ++.+.. . ++..+.+..++++|..+.+..+ -|.-.|.++..+.++.+ . +.|..++.|.|-
T Consensus 458 NSIs~~~~---------~---~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~D 525 (1229)
T PRK09490 458 NSISLKEG---------E---EKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFD 525 (1229)
T ss_pred EeCCCCCC---------C---ccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEc
Confidence 5 333211 0 1223556778889988665555 46667888887775444 2 255445666666
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC------------hhHHHhhhhcCccccc
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS------------MPEQALCFLAGANSIF 333 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~------------~~~~~~~l~~Gan~~~ 333 (386)
+++-.-+|-.... .....+.++.+...+..+|...+...-+.++|+ .-.-.+++.+|-+.-+
T Consensus 526 plv~~v~t~~ee~-~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld~aI 599 (1229)
T PRK09490 526 PNIFAVATGIEEH-NNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGI 599 (1229)
T ss_pred CCcceeecChHHH-HHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcchhh
Confidence 6543224432211 123456677777778888875432221112222 2233556777877654
No 293
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.17 E-value=30 Score=33.29 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhh-cCcEEEEecCCCC----HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCH-HHHHHHHHHHHHc
Q 016605 158 FNQILEYVKDIRD-MGMEVCCTLGMLE----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSY-DERLETLKHVREA 231 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~g~~i~~t~g~l~----~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~-~~~l~~i~~a~~~ 231 (386)
.+.+++.++.+++ .+..+.++.+..+ .+.++.+.++|+|.+.+++-..+. ..... +.+. +.+.+.++.+++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHhc
Confidence 4566666666653 3455544442222 255666677788888876632110 00111 2222 3456667776654
Q ss_pred -CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC------CCCC--CC-CCCHHHHHHHHHHHHHh
Q 016605 232 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT------PLQD--QK-PVEIWEMIRMIATARIV 301 (386)
Q Consensus 232 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT------~l~~--~~-~~s~~e~~~~~a~~R~~ 301 (386)
.+++.+-+.. +..++.++++.+.+.| ++.+.+..-.+...- +... .+ +......++.++..+..
T Consensus 164 ~~iPV~vKl~p----~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~ 237 (334)
T PRK07565 164 VSIPVAVKLSP----YFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR 237 (334)
T ss_pred cCCcEEEEeCC----CchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh
Confidence 4554444322 2346778888888886 666655432221100 0000 00 11112223444444333
Q ss_pred CCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCC-----ChhHHHHHHHHcCCCc
Q 016605 302 MPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNN-----DFDADQLMFKVLGLTP 360 (386)
Q Consensus 302 lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~-----~~~~~~~~i~~~G~~p 360 (386)
. +..|-..+| +.- .......+.+||+.+..+..++. .++ =.+++..++++.||.-
T Consensus 238 ~-~ipIig~GG-I~s-~~Da~e~l~aGA~~V~v~t~~~~-~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 238 V-GADLAATTG-VHD-AEDVIKMLLAGADVVMIASALLR-HGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred c-CCCEEEECC-CCC-HHHHHHHHHcCCCceeeehHHhh-hCcHHHHHHHHHHHHHHHHcCCCC
Confidence 3 211212222 222 23346677899999966643332 111 2355667777778743
No 294
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=85.12 E-value=30 Score=31.50 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHH----HHHHHHhccCeeecccCc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~----l~~Lk~aG~~~v~i~le~ 204 (386)
..++.+.+.|.++|... ...+++.+.+..+++.+..+.++..-.+.+. ++.+.+ +.+.|.+++--
T Consensus 39 ~aa~~~~~~~~~ef~~~----------~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gC 107 (233)
T cd02911 39 EAARKLVKRGRKEFLPD----------DPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHC 107 (233)
T ss_pred HHHHHHHhcCCcccccc----------chHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCC
Confidence 34455666777666321 1456666677767665656555543333333 333334 35777777654
Q ss_pred h-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 205 S-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 205 ~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
. +++.+.=.+ .++++...+.++.+++.++++.+-+=.| .+ ++..++.+.+.+.| ++.+.+....+ +
T Consensus 108 P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g--~~-~~~~~la~~l~~aG--~d~ihv~~~~~--g--- 177 (233)
T cd02911 108 RQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG--VD-VDDEELARLIEKAG--ADIIHVDAMDP--G--- 177 (233)
T ss_pred CcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC--cC-cCHHHHHHHHHHhC--CCEEEECcCCC--C---
Confidence 4 443332111 2367888888888888777766655554 33 66778888888886 66554432211 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
...+.+ .+...+ .+. .-+..|-+. ..+.....+..||+.++.|.
T Consensus 178 ---~~ad~~----~I~~i~---~~i-pVIgnGgI~-s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 178 ---NHADLK----KIRDIS---TEL-FIIGNNSVT-TIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred ---CCCcHH----HHHHhc---CCC-EEEEECCcC-CHHHHHHHHHcCCCEEEEcC
Confidence 112222 222222 221 122223222 23334556678999998875
No 295
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=84.94 E-value=7.1 Score=35.23 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
..-+.++.++.+.+.|+++++|.--... ....+-+++.+++.. ...+++++--|..+.+.++++..+|.|-|+++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs----~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS----SEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc----cccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeC
Confidence 4445677788888899999887532222 223466778887775 45788888889999999999999999999997
Q ss_pred cCch--HHHHhhhCCCCCHHHHHHHHHHHHH-cCCe-eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 202 LDTS--REFYSKIITTRSYDERLETLKHVRE-AGIN-VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 202 le~~--~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~-v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
-.+. +++...+......+-++=+|+.-++ -|-. -...+++|= -.|.-+..+-.+.+.++| .-.+-++.. -..
T Consensus 104 saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLtsm-D~D 180 (256)
T COG0107 104 SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTSM-DRD 180 (256)
T ss_pred hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEeee-ccc
Confidence 6555 3332222110000000000000010 1100 001122221 234455666666777776 445555443 344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC-ccccccCCccccCCCCChhHHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G-an~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
||... .+.+. .+ ..+.... ..+-.++|--+ +.--..+|..| |+...... +..-...+..+....+.+
T Consensus 181 Gtk~G----yDl~l-~~---~v~~~v~-iPvIASGGaG~--~ehf~eaf~~~~adAaLAAs-iFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 181 GTKAG----YDLEL-TR---AVREAVN-IPVIASGGAGK--PEHFVEAFTEGKADAALAAS-IFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccccC----cCHHH-HH---HHHHhCC-CCEEecCCCCc--HHHHHHHHHhcCccHHHhhh-hhhcCcccHHHHHHHHHH
Confidence 66532 22222 22 2222111 11122332222 12224566555 55553332 222345688999999999
Q ss_pred cCCCc
Q 016605 356 LGLTP 360 (386)
Q Consensus 356 ~G~~p 360 (386)
.|..+
T Consensus 249 ~gi~V 253 (256)
T COG0107 249 QGIEV 253 (256)
T ss_pred cCCCc
Confidence 99654
No 296
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=84.43 E-value=17 Score=37.10 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecccC
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le 203 (386)
+++.+.+....+.|++-+-++++.. .| ..+.+...++.+++. +..+ +....+.+.++.--++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p-~~~~v~~~V~~l~~~~~~pI--SIDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DD-DPDVVKEKVKTALDALDSPV--IADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CC-cHHHHHHHHHHHHhhCCCcE--EEeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 8899999999999998777765432 12 234678888888754 5554 4455678888888888988877 443
Q ss_pred ch--HHHHhhhC---------C---CCCHHHHHHHHHHHHHcCC-eeeEeEEeecCCCHHHHHHHHHHHh----cCCCCC
Q 016605 204 TS--REFYSKII---------T---TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA----TLPTHP 264 (386)
Q Consensus 204 ~~--~~~~~~i~---------~---~~s~~~~l~~i~~a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~----~l~~~~ 264 (386)
.. ++..+.+. + ...++...+.++.+.++|+ .+-.+-++|. ...++.+.+..++ .++ -+
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~~~r~~~~-~P 313 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFRRASRLLN-VP 313 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHHHHHHhcC-Cc
Confidence 32 33322111 1 2245667788899999999 4556655554 2234666655555 243 23
Q ss_pred CeEeeeee
Q 016605 265 ESVPINAL 272 (386)
Q Consensus 265 ~~v~~~~f 272 (386)
-.+++...
T Consensus 314 il~GvSNv 321 (499)
T TIGR00284 314 LVFGAANV 321 (499)
T ss_pred EEEeeccc
Confidence 34555443
No 297
>TIGR03586 PseI pseudaminic acid synthase.
Probab=84.19 E-value=41 Score=32.34 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----------------C-CCh---------hhHHHHHHHHHHHhhcCcEEE
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------------I-GRK---------TNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~----------------~-ge~---------~~~~~l~~~i~~ik~~g~~i~ 176 (386)
+.+...+.++.+++.|.+-|-||.-.... + ++. +..+++.++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 67888888999999999877776421100 0 000 112334445555556788876
Q ss_pred EecCCCCHHHHHHHHHhccCeeeccc-CchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNHNL-DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i~l-e~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
+++ .+.+.++.|.+.|++.+.++- +.. + +.-++.+.+.|.+|-. =-|+ -|.+|+...++
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S~~~~-----------n----~~LL~~va~~gkPvil--stG~-~t~~Ei~~Av~ 154 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIASFEIT-----------D----LPLIRYVAKTGKPIIM--STGI-ATLEEIQEAVE 154 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECCcccc-----------C----HHHHHHHHhcCCcEEE--ECCC-CCHHHHHHHHH
Confidence 654 567888888888888777631 110 1 2345555666766321 1233 48999999999
Q ss_pred HHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---
Q 016605 256 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 256 ~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
++.+-| +.+.+-.+....+| ++ ...--++.+...+..++ ..+-++. . +.+......+...||+-+
T Consensus 155 ~i~~~g-~~~i~LlhC~s~YP-~~-------~~~~nL~~i~~lk~~f~-~pVG~SD-H-t~G~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 155 ACREAG-CKDLVLLKCTSSYP-AP-------LEDANLRTIPDLAERFN-VPVGLSD-H-TLGILAPVAAVALGACVIEKH 222 (327)
T ss_pred HHHHCC-CCcEEEEecCCCCC-CC-------cccCCHHHHHHHHHHhC-CCEEeeC-C-CCchHHHHHHHHcCCCEEEeC
Confidence 998776 22323223222222 11 11222445556665553 2232321 1 122344566778899844
Q ss_pred ccCCc-c---ccCCCCChhHHHHHHHH
Q 016605 333 FTGEK-L---LTTPNNDFDADQLMFKV 355 (386)
Q Consensus 333 ~~g~~-~---~t~~~~~~~~~~~~i~~ 355 (386)
++-++ . ......++++...|+++
T Consensus 223 ~tld~~l~G~D~~~Sl~p~e~~~lv~~ 249 (327)
T TIGR03586 223 FTLDRSDGGVDSAFSLEPDEFKALVKE 249 (327)
T ss_pred CChhhcCCCCChhccCCHHHHHHHHHH
Confidence 11111 1 12234566666555543
No 298
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=84.00 E-value=13 Score=35.61 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhcCc-EE-EEecCCCCHHHHHHHHHhccCeeecc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
+.++...+.|++.+.+......... |..+ +++.++++.+++.|. .+ .-..|. ....+..+++.|++.++++
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEc
Confidence 3444556788887766542222222 3333 557777777887776 54 344565 3458999999999988763
No 299
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.77 E-value=10 Score=34.49 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 130 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 130 ~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.+.+ .|++.+++.--.....+.+.+ .++|+++. ..++++.+--|..+.|.++++.++|++++.++-.+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n----~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHARE----FDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcch----HHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4555566 589998875321111233333 44444443 346788888899999999999999999999877665
No 300
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.74 E-value=9.2 Score=35.03 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
+.++.++.+.+.|++.+++.--.....|.+.++ ++++++.+.-.++.+--|..+.+.++.+.++|++++.++-.++
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~----~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENL----PVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchH----HHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 445566677778999998863221112333343 4444443222467778899999999999999999998876665
No 301
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.56 E-value=46 Score=32.59 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecC-CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 016605 157 NFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v 235 (386)
..+.+.++++.+++.++.+.+... ....+.++.+.++|++.+.+..-+.+..|. +...++.... +.+++.++++
T Consensus 116 ~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~i~---~~ik~~~ipV 190 (368)
T PRK08649 116 KPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLNLK---EFIYELDVPV 190 (368)
T ss_pred CHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHHHH---HHHHHCCCCE
Confidence 346677888888875555433222 235788999999999999986544322111 1112465544 4444556664
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC----CC-CCCCCCCHHHHHHHHHHHHHhCCCc----c
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT----PL-QDQKPVEIWEMIRMIATARIVMPKA----M 306 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT----~l-~~~~~~s~~e~~~~~a~~R~~lp~~----~ 306 (386)
|.|-.-|.++..+.++ .| ++.|-+. .-| |+ +. .....+....+.+..+.++.++... .
T Consensus 191 ----IaG~V~t~e~A~~l~~----aG--AD~V~VG-~G~--Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~v 257 (368)
T PRK08649 191 ----IVGGCVTYTTALHLMR----TG--AAGVLVG-IGP--GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYV 257 (368)
T ss_pred ----EEeCCCCHHHHHHHHH----cC--CCEEEEC-CCC--CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 3355557776666553 54 6666443 222 31 11 1111122222233333334333221 1
Q ss_pred eeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 307 VRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 307 i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
.-+..|-+....+. ..+|.+||+.++.|..+..+
T Consensus 258 pVIAdGGI~~~~di-akAlalGAd~Vm~Gs~fa~t 291 (368)
T PRK08649 258 HVIADGGIGTSGDI-AKAIACGADAVMLGSPLARA 291 (368)
T ss_pred eEEEeCCCCCHHHH-HHHHHcCCCeecccchhccc
Confidence 22344445444454 78899999999888765543
No 302
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=83.19 E-value=41 Score=31.58 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHH-hhcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~i-k~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.|.+...++.+.+.+.. +.|+.. +...+ ...+.+..+++.. ++..++++++... .+.+.++...++|+++|
T Consensus 26 ~n~e~~~avi~aAe~~~~P-vii~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSP-IILQIAEVRLNH---SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcCcchhcc---CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4567777777777777754 445432 11111 2345555555544 3556777766544 47888999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE-eec--------CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-IGL--------GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i-~Gl--------get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.+.-...+. ....+...+..+.+++.|+.+...+. +|- |.+..+..+..++.++.| +|.+.+
T Consensus 102 m~d~s~~~~-------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAv 172 (281)
T PRK06806 102 MFDGSHLPL-------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAV 172 (281)
T ss_pred EEcCCCCCH-------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEE
Confidence 885433310 01233445667778889988765432 230 111234455556666565 677777
Q ss_pred --eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc
Q 016605 270 --NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF 333 (386)
Q Consensus 270 --~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~ 333 (386)
.+..+ +. ...+....+.+.++.+.. -.| .+-+ |--++..+.-...+.+|++.+-
T Consensus 173 aiG~~hg---~~-~~~~~l~~~~L~~i~~~~--~iP--lV~h--G~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 173 AIGNAHG---MY-NGDPNLRFDRLQEINDVV--HIP--LVLH--GGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred ccCCCCC---CC-CCCCccCHHHHHHHHHhc--CCC--EEEE--CCCCCCHHHHHHHHHcCCcEEE
Confidence 44443 22 123445555433333321 112 1111 2123444444667889999883
No 303
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.86 E-value=30 Score=31.87 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-----hhHHHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-----~~~~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
+.|.+++.++..++.|+. ++..|.+.|-. .| ...+ -++.+.++ ++.|+.+.++. .+.+.++.+.+ .+|
T Consensus 27 s~e~~~~~a~~~~~~g~~-~~r~g~~kpRt-s~~sf~G~G~~-gl~~L~~~~~~~Gl~~~Tev--~d~~~v~~~~e-~vd 100 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYN-YFRGGAYKPRT-SAASFQGLGLQ-GIRYLHEVCQEFGLLSVSEI--MSERQLEEAYD-YLD 100 (250)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEecccCCCC-CCcccCCCCHH-HHHHHHHHHHHcCCCEEEee--CCHHHHHHHHh-cCC
Confidence 678999999999999984 55666554311 11 1224 34444444 46799876654 67889999988 599
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.++--.. .+ .+-++.+.+.|.+|.. =-|..-+.+|+...++.+..-| + ..+.+. ..
T Consensus 101 ilqIgs~~~----------~n----~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G-n-~~i~L~----eR 158 (250)
T PRK13397 101 VIQVGARNM----------QN----FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG-K-SNIILC----ER 158 (250)
T ss_pred EEEECcccc----------cC----HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC-C-CeEEEE----cc
Confidence 888853221 11 2344555555655322 1233358999999999998876 2 222221 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec--CcccccChhHHHhhhhcCccccccCCcc--c--cC---CCCCh
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLS--AGRVRFSMPEQALCFLAGANSIFTGEKL--L--TT---PNNDF 346 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g~~~--~--t~---~~~~~ 346 (386)
|+.-.+.+.-..-+ ++.+...+..+. ..++..+ .|.-.+.+.....++.+||+.++.+.-+ . .+ ...++
T Consensus 159 g~~~Y~~~~~n~~d-l~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~ 237 (250)
T PRK13397 159 GVRGYDVETRNMLD-IMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDY 237 (250)
T ss_pred ccCCCCCccccccC-HHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCH
Confidence 33111111000111 222333443222 1111111 2322233466678889999988654201 1 12 22577
Q ss_pred hHHHHHHHHc
Q 016605 347 DADQLMFKVL 356 (386)
Q Consensus 347 ~~~~~~i~~~ 356 (386)
++..++++++
T Consensus 238 ~~l~~l~~~~ 247 (250)
T PRK13397 238 KQLEQLGQEL 247 (250)
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 304
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=82.85 E-value=31 Score=31.09 Aligned_cols=102 Identities=16% Similarity=0.036 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhhcCcEE--EEecCC------CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHH
Q 016605 157 NFNQILEYVKDIRDMGMEV--CCTLGM------LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKH 227 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i--~~t~g~------l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~ 227 (386)
..++++..++.+++.|+.+ .++.|+ -..+.++.|.+.-.|.+-+.+=.. +-+--...++-+.++.++.++.
T Consensus 134 sv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~ 213 (275)
T COG1856 134 SVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKY 213 (275)
T ss_pred cHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHH
Confidence 3466677777777777663 344332 256677888777777765433222 2111112245578888889988
Q ss_pred HHHcCC-eeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 228 VREAGI-NVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 228 a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
|++.=- ++..+++=-.|+..-+ +=.++..++
T Consensus 214 AR~~f~~pv~iGCmrP~Ge~rvk---~d~~av~~g 245 (275)
T COG1856 214 ARKKFPNPVSIGCMRPRGEWRVK---LDKEAVLAG 245 (275)
T ss_pred HHHhCCCCeeEeecCcCchhHHH---HHHHHHHcC
Confidence 888621 5777777644665444 334444444
No 305
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.75 E-value=46 Score=31.90 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCcEEEEecccC-CCCCChhhH-----HHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeee
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWR-DTIGRKTNF-----NQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~-~~~ge~~~~-----~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
+.+.++...+.|+..+.+...+. .+.-.|..+ +.+.++++.+++.+.. +....|. +...+..+++.|++.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~-~~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGF-TQPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCC-chhhHHHHHHhCCCEEe
Confidence 34444555678887766643221 111123222 4445666666655432 3333454 35578889999999877
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
+
T Consensus 261 ~ 261 (340)
T TIGR01463 261 V 261 (340)
T ss_pred e
Confidence 4
No 306
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=82.18 E-value=14 Score=37.69 Aligned_cols=101 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-c--CcE--EEEe--cCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCT--LGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~--g~~--i~~t--~g~l~~e~l~~Lk~aG 194 (386)
.+++.+++.++++.+.|++.++|- ++.| -..-..+.++++.+++ . +++ ++++ .|.-....+.. .++|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~Ik----DtaG-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laA-ieAG 225 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIK----DMAA-LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKA-IEAG 225 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCcc-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHH-HHcC
Confidence 489999999999999999999883 2222 1233567777777774 3 344 3343 45444444444 4789
Q ss_pred cCeeecccCchHHHHhhhCCCC-CHHHHHHHHHHHHHcCCeee
Q 016605 195 LTAYNHNLDTSREFYSKIITTR-SYDERLETLKHVREAGINVC 236 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~ 236 (386)
++.|..++.++.+ ++++ +.+..+.+++ ..|+.++
T Consensus 226 ad~vDtai~Glg~-----~aGn~atE~vv~~L~---~~g~~tg 260 (499)
T PRK12330 226 VDVVDTAISSMSL-----GPGHNPTESLVEMLE---GTGYTTK 260 (499)
T ss_pred CCEEEeecccccc-----cccchhHHHHHHHHH---hcCCCCC
Confidence 9999988877611 2233 4565555544 4565543
No 307
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.12 E-value=24 Score=31.83 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++.+-++- ..|...+.+.++.+.+++..-++.+-.|+ ++.+.++...++|.+.+--
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5889999999999999998876653 11334455555555554332245555555 7999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+. +.++.+++.|+.+-.+++ |..|+..-+ ++| .+.+.+++ ...+
T Consensus 98 -------------P~~~~----~v~~~~~~~~i~~iPG~~-----TpsEi~~A~----~~G--a~~vKlFP-----A~~~ 144 (222)
T PRK07114 98 -------------PLFNP----DIAKVCNRRKVPYSPGCG-----SLSEIGYAE----ELG--CEIVKLFP-----GSVY 144 (222)
T ss_pred -------------CCCCH----HHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECc-----cccc
Confidence 22122 566788888886444333 667765554 444 44555433 2111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. ...+...+-.+|+..+ +.+|=++...+.-...|.+|+..+-.|.
T Consensus 145 ------G----~~~ikal~~p~p~i~~-~ptGGV~~~~~n~~~yl~aGa~avg~Gs 189 (222)
T PRK07114 145 ------G----PGFVKAIKGPMPWTKI-MPTGGVEPTEENLKKWFGAGVTCVGMGS 189 (222)
T ss_pred ------C----HHHHHHHhccCCCCeE-EeCCCCCcchhcHHHHHhCCCEEEEECh
Confidence 1 1234445556676322 2333344321223556668877774454
No 308
>PRK06801 hypothetical protein; Provisional
Probab=81.66 E-value=47 Score=31.25 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.+.+...++.+.+.+.. +.++.+ +... -..++.+..+++.+. +..+++.++... .+.+.+++-.++|+++|
T Consensus 26 ~n~e~~~avi~AAe~~~~P-vIl~~~~~~~~---~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSP-FIINIAEVHFK---YISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCC-EEEEeCcchhh---cCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEE
Confidence 4677777778887777754 444332 1111 124566777777665 567787776544 36788888888999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eEeEEeecCCC----------HHHHHHHHHHHhcCCCCCCe
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA----------EEDRVGLLHTLATLPTHPES 266 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v--~~~~i~Glget----------~ed~~~~l~~l~~l~~~~~~ 266 (386)
.+.-...+ . ..+.+...+..+.++..|+.+ ..+.+-|-... ..+..+..+|+++.| ++.
T Consensus 102 m~D~S~l~-~------eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg--vD~ 172 (286)
T PRK06801 102 MFDGSTLE-Y------EENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG--IDA 172 (286)
T ss_pred EEcCCCCC-H------HHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC--cCE
Confidence 88432221 0 012334456677788889865 33443222110 113355667777776 788
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+.+..+ +..|.. ...+.+..+.+.++.. ..+-..+ + .|--++..+.-..+...|++.+
T Consensus 173 LAvaiG-t~Hg~y-~~~~~l~~e~l~~i~~----~~~~PLV-l-HGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 173 LAVAIG-NAHGKY-KGEPKLDFARLAAIHQ----QTGLPLV-L-HGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred EEeccC-CCCCCC-CCCCCCCHHHHHHHHH----hcCCCEE-E-ECCCCCCHHHHHHHHHcCCcEE
Confidence 877333 333322 2223455554333322 2221111 1 1112334444567788999887
No 309
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.30 E-value=25 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHH
Q 016605 157 NFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELK 191 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk 191 (386)
..+++.++++.+.+.|.. ++-|.|..+++.+..+.
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv 174 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELI 174 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHH
Confidence 456666666666655543 23356666665555443
No 310
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=81.04 E-value=19 Score=34.34 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCC--CCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHH-HhccCeee
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYN 199 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~--~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk-~aG~~~v~ 199 (386)
.++..+.++.+.+.|++.+.+.+..... .|.+.. .+.++++|+ .++++..+.+..+.+.++.+. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~----~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN----WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc----HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3556777778888898888775532211 111112 256666764 467887777777888887765 57899998
Q ss_pred cccCch--HHHHhhhCC---CCCHHHHHHHHH
Q 016605 200 HNLDTS--REFYSKIIT---TRSYDERLETLK 226 (386)
Q Consensus 200 i~le~~--~~~~~~i~~---~~s~~~~l~~i~ 226 (386)
++=-.+ |.++..+.. ..+++++++.+.
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 865444 455555432 124555544443
No 311
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.63 E-value=12 Score=33.22 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
+.+++...++.+.+.|.+-|-..+|+.+. | ...+.+..+.+.++ ..+.+-..-|..+.+.+..|.++|.+++..
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~-~--at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPG-G--ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCC-C--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 56788888888888888877665554322 1 23333333333333 345566667777888888888888887643
No 312
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.51 E-value=16 Score=37.19 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
+++.+.++.+.+.|++.+++-... |. -..+.++++.+|+. ++.+.. -...+.+..+.|.++|+|.|-+++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~----~~---~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH----GH---QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC----Cc---cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHHcCCCEEEECc
Confidence 456777888888999888774321 21 36788999999865 344433 123689999999999999998777
Q ss_pred Cch----HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 203 DTS----REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 203 e~~----~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
-+. -..+..+.. ..+.-+.+..+.+++.|+++-+. |--.+..|+.+.+.
T Consensus 298 g~gsictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 552 111111111 24555566666666777664332 22246677776665
No 313
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=80.49 E-value=34 Score=31.28 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHcCCcEEEEecccCCC-------CCChhhHHHHHHHHHHHhhcCcEEEEec-CCCC--------HHHHHHHHHh
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDT-------IGRKTNFNQILEYVKDIRDMGMEVCCTL-GMLE--------KHQAIELKKA 193 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~-------~ge~~~~~~l~~~i~~ik~~g~~i~~t~-g~l~--------~e~l~~Lk~a 193 (386)
.++.+.+.|++.+.+.....++ .+.+..++.+.+.++.+++.|+++.++. .... .+.++.+.++
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 3445556677776554322110 1112245677777777777777643332 1111 4555666667
Q ss_pred ccCeeec
Q 016605 194 GLTAYNH 200 (386)
Q Consensus 194 G~~~v~i 200 (386)
|++.+.+
T Consensus 159 g~~~i~l 165 (265)
T cd03174 159 GADEISL 165 (265)
T ss_pred CCCEEEe
Confidence 7777775
No 314
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=80.43 E-value=42 Score=30.01 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.++.++++|+|.|.+++-.. ....+.-.+ ...++...+.++.+++. ++.+.+.+-.|.... ++..+.++.+.+
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-~~~~~~~~~l~~ 149 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALED 149 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-hHHHHHHHHHHH
Confidence 355666677888877765443 222111111 12556666677776654 445555444433222 478888888888
Q ss_pred CCCCCCeEeeeee
Q 016605 260 LPTHPESVPINAL 272 (386)
Q Consensus 260 l~~~~~~v~~~~f 272 (386)
.| ++.+.++..
T Consensus 150 ~G--vd~i~v~~~ 160 (231)
T cd02801 150 AG--ASALTVHGR 160 (231)
T ss_pred hC--CCEEEECCC
Confidence 86 677766543
No 315
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=80.33 E-value=29 Score=27.92 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++++.+.+. +.+.+-+++.+.. ....+.+.++++.+++.+.+ + ..-.|...++..++|+++|++.+.
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 57888776655 4567777776521 23556777778888766442 2 223455567788999999988765
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 108 ~ 108 (122)
T cd02071 108 G 108 (122)
T ss_pred C
Confidence 4
No 316
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=80.25 E-value=7.1 Score=36.02 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec--ccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 016605 157 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTS-REFYSKIITTRSYDERLETLKHVREAGI 233 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i--~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi 233 (386)
.|+.=.++|+..++.++- +..-..+++..+.|.+||+|.+.. ++-+. .- ...+..+.++..+.++.+.++-.
T Consensus 135 gy~~EVemi~~A~~~gl~--T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~---Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 135 GYDREVEMIRKAHEKGLF--TTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI---GAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp -HHHHHHHHHHHHHTT-E--E--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCe--eeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc---CccccCCHHHHHHHHHHHHHHHH
Confidence 345566777777777763 223347899999999999999875 44332 11 11124577877777777776654
Q ss_pred eeeEeEEe-ec---CCCHHHHHHHHHHHh
Q 016605 234 NVCSGGII-GL---GEAEEDRVGLLHTLA 258 (386)
Q Consensus 234 ~v~~~~i~-Gl---get~ed~~~~l~~l~ 258 (386)
.++-++|+ .+ -.+++|....++...
T Consensus 210 ~v~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 210 AVNPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp CC-TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 44444433 12 357777777766554
No 317
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.01 E-value=38 Score=32.32 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.++.++++|+|.|.++.-.. +..-+.-.+ ..+++...+.++.+++ .++++.+-+-.|..++..+..++++.+.+
T Consensus 79 ~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~ 158 (319)
T TIGR00737 79 EAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAED 158 (319)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHH
Confidence 334445566777776655332 211111111 1245666667777665 36777666655654444566778888888
Q ss_pred CCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhh-hcCccccccCCc
Q 016605 260 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF-LAGANSIFTGEK 337 (386)
Q Consensus 260 l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l-~~Gan~~~~g~~ 337 (386)
.| ++.+.++.-.+.. ....+.. +..+...+...+- .+ +..|-+. +.......+ ..||+.++.|..
T Consensus 159 ~G--~d~i~vh~r~~~~-----~~~~~~~---~~~i~~i~~~~~i-pv-i~nGgI~-~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 159 AG--AQAVTLHGRTRAQ-----GYSGEAN---WDIIARVKQAVRI-PV-IGNGDIF-SPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred hC--CCEEEEEcccccc-----cCCCchh---HHHHHHHHHcCCC-cE-EEeCCCC-CHHHHHHHHHhhCCCEEEEChh
Confidence 86 6777775432211 1111112 3334444443331 11 2233232 223334555 578999977743
No 318
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=79.88 E-value=6.2 Score=36.54 Aligned_cols=203 Identities=11% Similarity=-0.005 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
+-++.++...+.|++.++++-= ..|++.+ .++++++.+.++++.+--|..+ +.++.+.++|+++|.++--.+
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDL---dgg~~~n----~~~i~~i~~~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av 115 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIML---GADDASL----AAALEALRAYPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVF 115 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEEC---CCCCccc----HHHHHHHHhCCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHH
Confidence 3455666777889998887631 1244444 3444444445567777778775 999999999999999863222
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--------EeecCC---CHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGG--------IIGLGE---AEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--------i~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
. .+.-+++-..+.++..-..-+-+.++. ++-.|. +.-+..+.+..+.+.+ +..+-++.. -
T Consensus 116 ~------~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g--~~eii~TdI-~ 186 (262)
T PLN02446 116 R------DGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAY--CDEFLVHGV-D 186 (262)
T ss_pred h------CCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhC--CCEEEEEEE-c
Confidence 1 011234433333333311112222222 221232 3334555555555553 445444432 2
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc-ccCCCCChhHHHHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL-LTTPNNDFDADQLMF 353 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~-~t~~~~~~~~~~~~i 353 (386)
..||- ..++.+-+.++... .+..+-.++|--++..-.....+.+|...++.|..+ .-....+++|.+.+-
T Consensus 187 rDGtl----~G~d~el~~~l~~~-----~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~~~~ 257 (262)
T PLN02446 187 VEGKR----LGIDEELVALLGEH-----SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVVAWH 257 (262)
T ss_pred CCCcc----cCCCHHHHHHHHhh-----CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHHHHH
Confidence 33553 22344433222221 232334455433332211111222366777777643 134556888877665
Q ss_pred H
Q 016605 354 K 354 (386)
Q Consensus 354 ~ 354 (386)
+
T Consensus 258 ~ 258 (262)
T PLN02446 258 K 258 (262)
T ss_pred h
Confidence 4
No 319
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=79.66 E-value=6.6 Score=37.41 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 216 RSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+++...+.++.+++ .++++++-+=+|..++.++..++++.+.+.| ++.+.++.-+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G--~~~i~vH~Rt 161 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAG--VSAITVHGRT 161 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-
T ss_pred cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcc--cceEEEecCc
Confidence 367888888888886 4788999998888777888999999999997 6777776653
No 320
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=79.36 E-value=32 Score=32.43 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh-HHHHHHHHHHHhhc--C-cEE--EEecCC-CC----HHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRDM--G-MEV--CCTLGM-LE----KHQAIEL 190 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~ik~~--g-~~i--~~t~g~-l~----~e~l~~L 190 (386)
.+..++.+.++.+.+.|++.|+..+|+.+.++.+.. +.+-.++++.+|.. + +.+ ..++.. -. .+.+..|
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~l 168 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRL 168 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHH
Confidence 578999999999999999999887776542222322 45666777777643 2 333 333322 12 3334444
Q ss_pred H---HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 016605 191 K---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGI 233 (386)
Q Consensus 191 k---~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi 233 (386)
+ ++|.+++.- . .-.+.+.+.+-.+.++++|+
T Consensus 169 krKv~aGAd~~iT----------Q--~~fd~e~~~~~~~~~~~~g~ 202 (291)
T COG0685 169 KRKVDAGADFFIT----------Q--FFFDVEAFERFAERVRAAGI 202 (291)
T ss_pred HHHHhcchHHHHH----------H--HccCHHHHHHHHHHHHhcCC
Confidence 4 356554321 0 02355666666778888887
No 321
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=79.34 E-value=15 Score=32.57 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC----CCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g----~l~~e~l~~Lk~aG~~~v 198 (386)
..+.+.+.++.+++.|++.|+++.= ++ .| ..+.+.+.++++.++ ++++..+-. .-..+.++.|.+.|+++|
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L-~~-dg-~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGAL-TE-DG-EIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--B-ET-TS-SB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeE-CC-CC-CcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 3556677777888899999987531 11 12 256677777777765 556544421 124677899999999998
Q ss_pred ecc--cCchHHHHhhhCCCCCHHHHHHHHHHHH-HcCCeeeEeEEeecCCCHHHHHHHHHH
Q 016605 199 NHN--LDTSREFYSKIITTRSYDERLETLKHVR-EAGINVCSGGIIGLGEAEEDRVGLLHT 256 (386)
Q Consensus 199 ~i~--le~~~~~~~~i~~~~s~~~~l~~i~~a~-~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (386)
.-+ -.+. ....+ .++.+. .++-. +.+|.|=|-+.+.+.++++.
T Consensus 145 LTSGg~~~a---------~~g~~----~L~~lv~~a~~~--i~Im~GgGv~~~nv~~l~~~ 190 (201)
T PF03932_consen 145 LTSGGAPTA---------LEGIE----NLKELVEQAKGR--IEIMPGGGVRAENVPELVEE 190 (201)
T ss_dssp EESTTSSST---------TTCHH----HHHHHHHHHTTS--SEEEEESS--TTTHHHHHHH
T ss_pred ECCCCCCCH---------HHHHH----HHHHHHHHcCCC--cEEEecCCCCHHHHHHHHHh
Confidence 642 2111 11222 222222 23322 34777776666666666553
No 322
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.27 E-value=8.6 Score=37.11 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~~v~ 199 (386)
++++|.++.++.+.+.|++-+.+.+|.......+.......++++.+|+ .++++..+.+..+.+.++.+.+.| +|.|.
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 4677777777777777887777765531110000000113345555654 356666665666777777777665 77776
Q ss_pred cc
Q 016605 200 HN 201 (386)
Q Consensus 200 i~ 201 (386)
++
T Consensus 304 ~g 305 (337)
T PRK13523 304 IG 305 (337)
T ss_pred hh
Confidence 64
No 323
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=79.16 E-value=56 Score=30.54 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHcCCcE-EEEecccCCCCCChhhHHHHHHHHHHHhh-cCc-EEEEecCCCCHHHHHHHHHhc---c
Q 016605 122 MTKDAVMQAAQKAKEAGSTR-FCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGM-EVCCTLGMLEKHQAIELKKAG---L 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~-v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~-~i~~t~g~l~~e~l~~Lk~aG---~ 195 (386)
.++++-...++ ..|+.. |+++.+.. +...+..+..+++..+ .|. -..+. ...+|...+|.+.+ +
T Consensus 37 ~~~~dY~~~~~---~~gv~~~V~vq~~~~-----~~D~~~e~~~v~~~~~~~g~~vg~id--~~~~e~~a~L~~~~~~~~ 106 (279)
T COG3618 37 YLFEDYLALLK---AHGVSGGVLVQVNVD-----PRDNEKELAFVAELAERHGGIVGVID--ECRPEFAAKLERARYPFF 106 (279)
T ss_pred CCHHHHHHHHH---hcCcceeEEEecccC-----ccchHHHHHHHHhhHHhhCceEEEEe--cCCchHHHHHHHhccccc
Confidence 56766665444 467655 55555432 2345677777777764 342 21111 12234666776666 3
Q ss_pred CeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 196 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 196 ~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
..+-..+... ...+ .-..+-+.++.+++.|+.+...+- ..++.+.+.++.+.+ +. ...+-
T Consensus 107 ~GvR~~l~~~p~~~~-------~a~~~r~~~~rL~~~gl~fdl~~~------~~ql~~~i~l~~~~P-d~-----~~Vld 167 (279)
T COG3618 107 RGVRRNLHVVPDGLF-------EAPAWRANVERLAKLGLHFDLQVD------PHQLPDLIPLALKAP-DV-----NFVLD 167 (279)
T ss_pred ceeeehhhcCCccch-------hhHHHHHHHHHHHhcCCeEEEEeC------hhhhHHHHHHHhhCC-CC-----CEEec
Confidence 3333322222 1111 125777889999999998776443 456777777777764 12 11222
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-------ccc--ccChhHHHhhhhcCccccccCCcc-ccCCCC
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-------GRV--RFSMPEQALCFLAGANSIFTGEKL-LTTPNN 344 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-------g~~--~~~~~~~~~~l~~Gan~~~~g~~~-~t~~~~ 344 (386)
+-|.|.-. ..........+..+++ .|+.++.+++ +|. ...+-.....-.+|.+.++-|..+ +++-+.
T Consensus 168 H~G~p~~~-~~~~~~w~~~m~~la~--~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~~ 244 (279)
T COG3618 168 HCGRPDIK-INLEDPWKAALARLAR--RPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWPVTSLES 244 (279)
T ss_pred cCCCCCcc-ccccCHHHHHHHHHHh--CCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccccC
Confidence 34555211 1122222233333333 3777777764 111 111223333445788888777654 444555
Q ss_pred ChhHHHHHHHHc
Q 016605 345 DFDADQLMFKVL 356 (386)
Q Consensus 345 ~~~~~~~~i~~~ 356 (386)
+....+.+++++
T Consensus 245 ~~~~~~~~~~~~ 256 (279)
T COG3618 245 DFASWVAATREL 256 (279)
T ss_pred ChHHHHHHHHHH
Confidence 777777777764
No 324
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=79.09 E-value=35 Score=32.80 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHH--cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 131 AQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 131 ~~~~~~--~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
++.+.+ .|++-+++-... | .-+..+++|+.+|+.. .++.. -...+.+.++.|.++|+|.+-+++-..
T Consensus 113 ~~~L~~~~~g~D~iviD~Ah----G---hs~~~i~~ik~ik~~~P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVGIGpG- 183 (346)
T PRK05096 113 TKQILALSPALNFICIDVAN----G---YSEHFVQFVAKAREAWPDKTICA-GNVVTGEMVEELILSGADIVKVGIGPG- 183 (346)
T ss_pred HHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHHhCCCCcEEE-ecccCHHHHHHHHHcCCCEEEEcccCC-
Confidence 344444 488878774321 2 3468899999999653 33322 224689999999999999998766432
Q ss_pred HHHhhhCCC--------CCHHHHHHHHHHHHHcCCeeeE
Q 016605 207 EFYSKIITT--------RSYDERLETLKHVREAGINVCS 237 (386)
Q Consensus 207 ~~~~~i~~~--------~s~~~~l~~i~~a~~~Gi~v~~ 237 (386)
.+|.+ .....+.++-+.+++.|.++-+
T Consensus 184 ----SiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 184 ----SVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS 218 (346)
T ss_pred ----ccccCccccccChhHHHHHHHHHHHHHHcCCCEEe
Confidence 12221 1356677778888888887544
No 325
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=79.03 E-value=51 Score=30.53 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhc--CcEEEE----e-cCCCCHHHHHHHHHhccCeee----c-ccCch-HHHHhhhCCCCCHHHHHHHH
Q 016605 159 NQILEYVKDIRDM--GMEVCC----T-LGMLEKHQAIELKKAGLTAYN----H-NLDTS-REFYSKIITTRSYDERLETL 225 (386)
Q Consensus 159 ~~l~~~i~~ik~~--g~~i~~----t-~g~l~~e~l~~Lk~aG~~~v~----i-~le~~-~~~~~~i~~~~s~~~~l~~i 225 (386)
+..+++.+++-.. +.+++. + +-..-+..+++|++.|+..|. + -+|+. ++.++. .+-.|+.=++.|
T Consensus 66 ~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe--~Gmgy~~EVemi 143 (268)
T PF09370_consen 66 EIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEE--TGMGYDREVEMI 143 (268)
T ss_dssp HHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHH--TT--HHHHHHHH
T ss_pred HHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHh--cCCCHHHHHHHH
Confidence 4566666555321 344321 1 222347778888888877765 2 23443 444443 245899999999
Q ss_pred HHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHH----HHHHHh
Q 016605 226 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI----ATARIV 301 (386)
Q Consensus 226 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~----a~~R~~ 301 (386)
+.+++.|+.+ +.+.+ +.++...+.+.= +|.+-++.=.-..|+ .......+.++..+.+ ..++..
T Consensus 144 ~~A~~~gl~T-~~yvf----~~e~A~~M~~AG------aDiiv~H~GlT~gG~-~Ga~~~~sl~~a~~~~~~i~~aa~~v 211 (268)
T PF09370_consen 144 RKAHEKGLFT-TAYVF----NEEQARAMAEAG------ADIIVAHMGLTTGGS-IGAKTALSLEEAAERIQEIFDAARAV 211 (268)
T ss_dssp HHHHHTT-EE---EE-----SHHHHHHHHHHT-------SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCee-eeeec----CHHHHHHHHHcC------CCEEEecCCccCCCC-cCccccCCHHHHHHHHHHHHHHHHHh
Confidence 9999999843 33443 788888776433 444433321111222 2223456777666654 344556
Q ss_pred CCCcceeecCcccccChhHHHhhh-hcCccccccCCc
Q 016605 302 MPKAMVRLSAGRVRFSMPEQALCF-LAGANSIFTGEK 337 (386)
Q Consensus 302 lp~~~i~i~~g~~~~~~~~~~~~l-~~Gan~~~~g~~ 337 (386)
-|+.++-..+|-+.--.+.++..- ..|++.++.++.
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccc
Confidence 677543333333332223322222 345788877753
No 326
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.96 E-value=54 Score=30.32 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh-------------hHHHHHHHHHHHhhc--CcE-EEEe--cC---
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRDM--GME-VCCT--LG--- 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~-------------~~~~l~~~i~~ik~~--g~~-i~~t--~g--- 180 (386)
+.+.-.+.++.+.+.|++-+-++--..+|. ..|. ..+.+++.++++++. .++ +..+ |-
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 567778888888889998777753222221 1121 234678888888732 344 2222 21
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.-.++.++.++++|++.+.+. .-.+++.-+..+.+++.|+..- +++. ..+.+++.+.+...
T Consensus 104 ~G~e~f~~~~~~aGvdGviip-------------DLp~ee~~~~~~~~~~~gl~~I--~lva-p~t~~eri~~i~~~--- 164 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIP-------------DLPPEEAEELRAAAKKHGLDLI--FLVA-PTTTDERLKKIASH--- 164 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEEC-------------CCCHHHHHHHHHHHHHcCCcEE--EEeC-CCCCHHHHHHHHHh---
Confidence 124778999999999998872 2356777788889999998743 2232 33434444443333
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
. ..++.+...+...|+ ....+.+.. +.+...|...+. .+-+. .++....+...+..+|+.++.|..+
T Consensus 165 s--~gfIY~vs~~GvTG~--~~~~~~~~~---~~i~~vk~~~~~-pv~vG---fGI~~~e~v~~~~~~ADGviVGSai 231 (258)
T PRK13111 165 A--SGFVYYVSRAGVTGA--RSADAADLA---ELVARLKAHTDL-PVAVG---FGISTPEQAAAIAAVADGVIVGSAL 231 (258)
T ss_pred C--CCcEEEEeCCCCCCc--ccCCCccHH---HHHHHHHhcCCC-cEEEE---cccCCHHHHHHHHHhCCEEEEcHHH
Confidence 2 334444344333343 222222333 444555554422 12121 2232223344445569999888744
No 327
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.80 E-value=24 Score=32.30 Aligned_cols=129 Identities=17% Similarity=0.085 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe---------cCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t---------~g~l~~e~l~~Lk~ 192 (386)
+++..+.+.++.+.+. ++-+-+.+|..... ..+.+.+.|+..++.|+.++.- .+ .-++.++.+++
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt~~l~----~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~-~~~~yl~~~k~ 95 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGTSALY----PEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQG-KFDEYLEECKE 95 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTGGGGS----TCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCceeeec----CHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcC-hHHHHHHHHHH
Confidence 6676666666655443 56666765432211 2245777777788888775431 22 24788888899
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecC-------CCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG-------EAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glg-------et~ed~~~~l~~l~~l~~~~~ 265 (386)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+.+-+-+ |-- .+.+++.+.++.-.+.| .+
T Consensus 96 lGf~~IEiSdGti---------~l~~~~r~~~I~~~~~~Gf~v~~Ev--G~K~~~~~~~~~~~~~i~~~~~dLeAG--A~ 162 (244)
T PF02679_consen 96 LGFDAIEISDGTI---------DLPEEERLRLIRKAKEEGFKVLSEV--GKKDPESDFSLDPEELIEQAKRDLEAG--AD 162 (244)
T ss_dssp CT-SEEEE--SSS------------HHHHHHHHHHHCCTTSEEEEEE--S-SSHHHHTT--CCHHHHHHHHHHHHT--EC
T ss_pred cCCCEEEecCCce---------eCCHHHHHHHHHHHHHCCCEEeecc--cCCCchhcccCCHHHHHHHHHHHHHCC--CC
Confidence 9999888864332 2356777788888888888754432 221 12345555555555554 44
Q ss_pred eEee
Q 016605 266 SVPI 269 (386)
Q Consensus 266 ~v~~ 269 (386)
.|.+
T Consensus 163 ~Vii 166 (244)
T PF02679_consen 163 KVII 166 (244)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 328
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=78.75 E-value=54 Score=31.61 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh--cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~--~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.+.++.+.+.|...+.+.+......|. ++.++.+++ ..+++......+++-++.+-+.+|.|.|.+=+..+
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~~~F~Gs-------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL 214 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDEKYFQGS-------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVL 214 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCcCcCCCC-------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhC
Confidence 444566677888888766533222332 233345554 35677777778899999999999999988644333
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCC
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP 285 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~ 285 (386)
+.++..+-++.+++.|+.+=+- -.+.+|+...+... + ++.|+++.-.. .| | .
T Consensus 215 -----------~~~~L~~l~~~A~~LGme~LVE-----VH~~~ElerAl~~~---g--a~iIGINNRdL--~T-f----~ 266 (338)
T PLN02460 215 -----------PDLDIKYMLKICKSLGMAALIE-----VHDEREMDRVLGIE---G--VELIGINNRSL--ET-F----E 266 (338)
T ss_pred -----------CHHHHHHHHHHHHHcCCeEEEE-----eCCHHHHHHHHhcC---C--CCEEEEeCCCC--Cc-c----e
Confidence 2234446678889999873221 23666665544321 3 66788876432 11 1 1
Q ss_pred CCHHHHHHHHHHHH-HhC-CCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 286 VEIWEMIRMIATAR-IVM-PKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 286 ~s~~e~~~~~a~~R-~~l-p~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
.+.....++....+ ..+ |...+.++-+-+. .+..-.....+|+|.++.|+.+..+
T Consensus 267 vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~-t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 267 VDISNTKKLLEGERGEQIREKGIIVVGESGLF-TPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred ECHHHHHHHhhhccccccCCCCeEEEECCCCC-CHHHHHHHHHCCCCEEEECHHHhCC
Confidence 23443333332111 133 3434444422122 1222244557899999999866654
No 329
>PLN02540 methylenetetrahydrofolate reductase
Probab=78.64 E-value=52 Score=34.06 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----hhhHHHHHHHHHHHhhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRDM 171 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-----~~~~~~l~~~i~~ik~~ 171 (386)
++.++|...+..+.+.|++.|....|+.+..++ +..+++..++|+.+++.
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~ 124 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSK 124 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHh
Confidence 567889999999999999999777766554332 13456788888888753
No 330
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.47 E-value=18 Score=32.85 Aligned_cols=75 Identities=19% Similarity=0.060 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++.-=... .+.+.+. ++++++.+ ...++.+--|..+.+.++.+.+.|++++.++-.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~----~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNE----MYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchH----HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 4455666777789999988632111 1323232 55555554 2336777889999999999999999999987766
Q ss_pred h
Q 016605 205 S 205 (386)
Q Consensus 205 ~ 205 (386)
+
T Consensus 106 ~ 106 (232)
T PRK13586 106 F 106 (232)
T ss_pred h
Confidence 5
No 331
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.30 E-value=13 Score=35.38 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----hhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHh-c
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-G 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-----~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~a-G 194 (386)
.+.++.++.++.+.+.|++.+.+.++....... +......++.++.+++ .++++..+.|..+.+.++.+.+. |
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 356777888888888888777766543211000 0001334455566653 35667666666677777777776 6
Q ss_pred cCeeecc
Q 016605 195 LTAYNHN 201 (386)
Q Consensus 195 ~~~v~i~ 201 (386)
+|.|.++
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 8877764
No 332
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.28 E-value=51 Score=29.57 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cC--cEEEEecCC-CCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCTLGM-LEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g--~~i~~t~g~-l~~e~l~~Lk~aG~~~ 197 (386)
.+.++.+..++.+.+.|++-+-++- + . +.-++.|+.+++ .+ .++++-.|+ ++.+.++...++|.+.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~--~----~----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTY--T----N----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--C----C----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 5789999999999999998876653 1 1 234455566653 32 235555565 7899999999999876
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+-- |.-+. +.++.+++.|+.+ +.|. .|..|+...+ +.| .+.+.++ | .
T Consensus 92 ivs-------------P~~~~----~v~~~~~~~~i~~----iPG~-~T~~E~~~A~----~~G--ad~vklF---P--a 138 (213)
T PRK06552 92 IVS-------------PSFNR----ETAKICNLYQIPY----LPGC-MTVTEIVTAL----EAG--SEIVKLF---P--G 138 (213)
T ss_pred EEC-------------CCCCH----HHHHHHHHcCCCE----ECCc-CCHHHHHHHH----HcC--CCEEEEC---C--c
Confidence 542 22222 5567788999863 3333 3677776554 354 6777762 2 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
.. ..... +...+..+|..-+- ..| ++..+.-...+.+|++.+-.|..+
T Consensus 139 ~~------~G~~~----ik~l~~~~p~ip~~-atG--GI~~~N~~~~l~aGa~~vavgs~l 186 (213)
T PRK06552 139 ST------LGPSF----IKAIKGPLPQVNVM-VTG--GVNLDNVKDWFAAGADAVGIGGEL 186 (213)
T ss_pred cc------CCHHH----HHHHhhhCCCCEEE-EEC--CCCHHHHHHHHHCCCcEEEEchHH
Confidence 11 22222 33445566653221 222 233344466788999998666533
No 333
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.01 E-value=52 Score=30.46 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-EE-EecCCCCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~-~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
..|...+ .+++.|++.+.+. ++.+++..++++.+++.|+. +. +++ ..+++.++.+.+..-+.|+.
T Consensus 105 G~e~f~~---~~~~aGvdGviip---------DLp~ee~~~~~~~~~~~gl~~I~lvap-~t~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 105 GVERFAA---DAAEAGVDGLIIP---------DLPPEEAEELRAAAKKHGLDLIFLVAP-TTTDERLKKIASHASGFVYY 171 (258)
T ss_pred CHHHHHH---HHHHcCCcEEEEC---------CCCHHHHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHhCCCcEEE
Confidence 4555554 5556799888773 23467888888888988987 33 333 34678888888876666653
Q ss_pred -ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC-CHHHHHHHHHH
Q 016605 201 -NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-AEEDRVGLLHT 256 (386)
Q Consensus 201 -~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge-t~ed~~~~l~~ 256 (386)
+.-+.-. . +........+.++.+++.. ..-+++|.|- +.+++.+.+..
T Consensus 172 vs~~GvTG----~-~~~~~~~~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~ 221 (258)
T PRK13111 172 VSRAGVTG----A-RSADAADLAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV 221 (258)
T ss_pred EeCCCCCC----c-ccCCCccHHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh
Confidence 4433200 0 0111233445666666642 3446678865 77888777653
No 334
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=77.75 E-value=65 Score=30.56 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCC-CChhh-----HHHHHHHHHHHhhcCcEEEE-ecCCCCHHHHHHHHHhccCeeec
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-----FNQILEYVKDIRDMGMEVCC-TLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~~-----~~~l~~~i~~ik~~g~~i~~-t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++...+.|+..+.+...+.... -.|.. .+.+.++++.+++.|..+.. ..|. +...++.|.+.|++.+++
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~-~~~~~~~l~~~~~d~~~~ 249 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD-TAPILELMADLGADVFSI 249 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC-chhHHHHHHHhCCCeEee
Confidence 3344445566887666642211111 02322 24455666667766655333 3454 347799999999998876
Q ss_pred c
Q 016605 201 N 201 (386)
Q Consensus 201 ~ 201 (386)
.
T Consensus 250 d 250 (330)
T cd03465 250 D 250 (330)
T ss_pred c
Confidence 4
No 335
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=77.72 E-value=20 Score=34.60 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cC--cE--EEEe--cCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--ME--VCCT--LGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g--~~--i~~t--~g~l~~e~l~~Lk~aG 194 (386)
.+++++.+.++.+.+.|+..|++.- +.|- ...+++.++++.+++ .+ ++ ++.+ .|+-....+..+ ++|
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~D----T~G~-~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi-~aG 213 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVD----SAGA-MLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAI-EAG 213 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcc----CCCC-CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHH-HhC
Confidence 4667777777777777777776631 2221 233455555555542 22 22 2332 333333444443 577
Q ss_pred cCeeecccCch
Q 016605 195 LTAYNHNLDTS 205 (386)
Q Consensus 195 ~~~v~i~le~~ 205 (386)
+++|..++.++
T Consensus 214 a~~iD~Sl~G~ 224 (333)
T TIGR03217 214 ATRIDASLRGL 224 (333)
T ss_pred CCEEEeecccc
Confidence 77777666655
No 336
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=77.71 E-value=6.7 Score=35.57 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS- 205 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~- 205 (386)
++.++.+.+.|++.+++.-=.....| ...-.++|+.+. ..++++.+--|..+.+.++++.++|++++.++-+++
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa~~g----~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAAKEG----RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHHCCT----HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCcccC----chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 33455666789999988631111112 234446666665 447889899999999999999999999999876665
Q ss_pred -HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee-----cCCC---HHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 206 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-----LGEA---EEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 206 -~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G-----lget---~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
++..+ +..+..-..-+-+..++--| .|.. .-+..+.++.+.+++ +..+-+... -..
T Consensus 108 ~~~~l~------------~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~tdi-~~d 172 (229)
T PF00977_consen 108 DPELLE------------ELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG--AGEIILTDI-DRD 172 (229)
T ss_dssp CCHHHH------------HHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT---SEEEEEET-TTT
T ss_pred chhHHH------------HHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC--CcEEEEeec-ccc
Confidence 12222 22222222223233333333 2322 346788888888886 556544332 233
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
||-. .++.+- ++ ..+... +..+-.++|--+. .+. ......|++.++.|.
T Consensus 173 Gt~~----G~d~~~-~~---~l~~~~-~~~viasGGv~~~-~Dl-~~l~~~G~~gvivg~ 221 (229)
T PF00977_consen 173 GTMQ----GPDLEL-LK---QLAEAV-NIPVIASGGVRSL-EDL-RELKKAGIDGVIVGS 221 (229)
T ss_dssp TTSS----S--HHH-HH---HHHHHH-SSEEEEESS--SH-HHH-HHHHHTTECEEEESH
T ss_pred CCcC----CCCHHH-HH---HHHHHc-CCCEEEecCCCCH-HHH-HHHHHCCCcEEEEeh
Confidence 5542 233322 22 222222 2223344432222 232 334478888887765
No 337
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.71 E-value=62 Score=30.32 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhh-cCcEEEEec-CCC---CHHHHHHHHHhccCeeecccCchHHHHhhhC--CCCCHHHHHHHHHHHHHc
Q 016605 159 NQILEYVKDIRD-MGMEVCCTL-GML---EKHQAIELKKAGLTAYNHNLDTSREFYSKII--TTRSYDERLETLKHVREA 231 (386)
Q Consensus 159 ~~l~~~i~~ik~-~g~~i~~t~-g~l---~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~--~~~s~~~~l~~i~~a~~~ 231 (386)
+.+++.++..++ .+.++.++. |.. -.+.+++++++|+|.|.+++-... . +... -..+.+...+.++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~-~-~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPN-V-KGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCC-C-CCCcccccCCHHHHHHHHHHHHhc
Confidence 555666555543 344544443 221 245566777889999988765431 0 0100 024567777778888776
Q ss_pred -CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee-----------ecCCCCCCCCCCC-CHHHHHHHHHHH
Q 016605 232 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL-----------AVKGTPLQDQKPV-EIWEMIRMIATA 298 (386)
Q Consensus 232 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~-----------P~~gT~l~~~~~~-s~~e~~~~~a~~ 298 (386)
++++.+-+ +-+.++..++++.+.+.| ++.+.+..-. |..+........+ .....++.+...
T Consensus 153 ~~~Pv~vKl----~~~~~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i 226 (296)
T cd04740 153 TDVPVIVKL----TPNVTDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQV 226 (296)
T ss_pred cCCCEEEEe----CCCchhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHH
Confidence 66655443 223457888888888886 6665543211 1111111111111 111123344444
Q ss_pred HHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCC---CChhHHHHHHHHcCCCc
Q 016605 299 RIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN---NDFDADQLMFKVLGLTP 360 (386)
Q Consensus 299 R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~---~~~~~~~~~i~~~G~~p 360 (386)
+..++ +.-+..|-+. ..+.....+.+||+.++.+..++.... .-.++..+++++.||.-
T Consensus 227 ~~~~~--ipii~~GGI~-~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~ 288 (296)
T cd04740 227 YKAVE--IPIIGVGGIA-SGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKS 288 (296)
T ss_pred HHhcC--CCEEEECCCC-CHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 43332 1122233232 234446677899998877654433110 12344566777777754
No 338
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=77.66 E-value=63 Score=30.37 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee------cCCCC-----CCCC
Q 016605 216 RSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA------VKGTP-----LQDQ 283 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P------~~gT~-----l~~~ 283 (386)
.+.+...+.++.+++. ++++.+-+ ..+.++..++++.+.+.| ++.+.++.-++ ..+.+ ....
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi----~~~~~~~~~~a~~l~~~G--~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~ 213 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKL----SPNVTDITEIAKAAEEAG--ADGLTLINTLRGMKIDIKTGKPILANKTGGL 213 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEC----CCChhhHHHHHHHHHHcC--CCEEEEEccCCccccccccCceeeCCCCccc
Confidence 3567777777777765 55544433 235567888888888887 67776642111 00111 1111
Q ss_pred CCCCHH-HHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCC---CChhHHHHHHHHcCCC
Q 016605 284 KPVEIW-EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN---NDFDADQLMFKVLGLT 359 (386)
Q Consensus 284 ~~~s~~-e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~---~~~~~~~~~i~~~G~~ 359 (386)
..+... -.++.+...+...+ +.-+..|-+. .++.....+.+||+.++.|..++.... .-.+++.+++++.||.
T Consensus 214 sg~~~~~~~l~~v~~i~~~~~--ipvi~~GGI~-s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 214 SGPAIKPIALRMVYDVYKMVD--IPIIGVGGIT-SFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred cchhhhHHHHHHHHHHHhcCC--CCEEEECCCC-CHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 111111 11233333333332 1112222222 234446677799999987764443221 2345667777888876
Q ss_pred cC
Q 016605 360 PK 361 (386)
Q Consensus 360 p~ 361 (386)
-+
T Consensus 291 ~~ 292 (300)
T TIGR01037 291 SI 292 (300)
T ss_pred CH
Confidence 43
No 339
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=77.63 E-value=12 Score=34.45 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
++.++...+.|++.++++- +|++ +.+.+.++++ ..++++...-|..+ +.++.+.++|++++.++=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVD-----Lg~~-n~~~i~~i~~---~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIM-----LGPN-NDDAAKEALH---AYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEE-----CCCC-cHHHHHHHHH---hCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 4556677788999998874 2555 5544444444 34678888888875 999999999999999864
No 340
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=77.61 E-value=30 Score=33.24 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-----------------CCh---------hhHHHHHHHHHHHhhcCcEEE
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----------------GRK---------TNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-----------------ge~---------~~~~~l~~~i~~ik~~g~~i~ 176 (386)
+.+...+.++.+++.|++.|-||.-...+. +.+ +..+++.++.+..++.|+.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 677888888888999998888874210000 100 111344444455556788876
Q ss_pred EecCCCCHHHHHHHHHhccCeeecc-cCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHH
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNHN-LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLL 254 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i~-le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l 254 (386)
+++ .+.+.++.|.+.|++.+-++ -+.. + +.-++.+.+.|.++ |+-. .-|.+|+...+
T Consensus 94 stp--fd~~svd~l~~~~v~~~KIaS~~~~-----------n----~pLL~~~A~~gkPv----ilStGmatl~Ei~~Av 152 (329)
T TIGR03569 94 STP--FDLESADFLEDLGVPRFKIPSGEIT-----------N----APLLKKIARFGKPV----ILSTGMATLEEIEAAV 152 (329)
T ss_pred EEe--CCHHHHHHHHhcCCCEEEECccccc-----------C----HHHHHHHHhcCCcE----EEECCCCCHHHHHHHH
Confidence 665 57888899988888888773 2221 1 23455556667652 2212 13788888888
Q ss_pred HHHhcCCCCC--CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 255 HTLATLPTHP--ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 255 ~~l~~l~~~~--~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
++++.-| +. +.+-++... + .|.+..+--++.+...+..++ ..+-++ +. +.+......+...||+-+
T Consensus 153 ~~i~~~G-~~~~~i~llhC~s---~-----YP~~~~~~nL~~I~~Lk~~f~-~pVG~S-dH-t~G~~~~~aAvalGA~iI 220 (329)
T TIGR03569 153 GVLRDAG-TPDSNITLLHCTT---E-----YPAPFEDVNLNAMDTLKEAFD-LPVGYS-DH-TLGIEAPIAAVALGATVI 220 (329)
T ss_pred HHHHHcC-CCcCcEEEEEECC---C-----CCCCcccCCHHHHHHHHHHhC-CCEEEC-CC-CccHHHHHHHHHcCCCEE
Confidence 8888766 22 122222211 1 111112222455556665553 222222 11 122344466777788854
Q ss_pred ---ccCCc-c---ccCCCCChhHHHHHHHH
Q 016605 333 ---FTGEK-L---LTTPNNDFDADQLMFKV 355 (386)
Q Consensus 333 ---~~g~~-~---~t~~~~~~~~~~~~i~~ 355 (386)
++-++ . ......+++|..+|+++
T Consensus 221 EkH~tldk~~~G~D~~~Sl~p~el~~lv~~ 250 (329)
T TIGR03569 221 EKHFTLDKNLPGPDHKASLEPDELKEMVQG 250 (329)
T ss_pred EeCCChhhcCCCCChhhcCCHHHHHHHHHH
Confidence 11111 1 11233567777666655
No 341
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=77.56 E-value=18 Score=35.05 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-C-cEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G-MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g-~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.+.++.+.+.|++-+++-+.. | .-++..+.++.+|+. + +++..-| ..+.+..+.|.++|+|.|-+++-..
T Consensus 110 ~er~~~L~~agvD~ivID~a~----g---~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAH----G---HSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS----T---TSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred HHHHHHHHHcCCCEEEccccC----c---cHHHHHHHHHHHHHhCCCceEEecc-cCCHHHHHHHHHcCCCEEEEeccCC
Confidence 445566677899888885432 2 236778888888854 3 5554332 4789999999999999999887543
Q ss_pred ----HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 206 ----REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 206 ----~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
.+.-..+.. ....-+.++-+.++++++++-++-=+ .+.-|+.+-+
T Consensus 182 siCtTr~v~GvG~-PQ~tAv~~~a~~a~~~~v~iIADGGi---~~sGDi~KAl 230 (352)
T PF00478_consen 182 SICTTREVTGVGV-PQLTAVYECAEAARDYGVPIIADGGI---RTSGDIVKAL 230 (352)
T ss_dssp TTBHHHHHHSBSC-THHHHHHHHHHHHHCTTSEEEEESS----SSHHHHHHHH
T ss_pred cccccccccccCC-cHHHHHHHHHHHhhhccCceeecCCc---Ccccceeeee
Confidence 122222222 24667778888888898876554211 2455665554
No 342
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=77.23 E-value=39 Score=34.13 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE----EEecC-CC----CHHHHHHHHHh
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV----CCTLG-ML----EKHQAIELKKA 193 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i----~~t~g-~l----~~e~l~~Lk~a 193 (386)
+.+-+...++.+.+.|++.|-+... -...+.+...++.+|+.|..+ +.+.. .- ..+.++.+.++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~-------lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDA-------LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEccc-------CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 3444555567777888877655432 124577777888888777663 22211 11 23567777888
Q ss_pred ccCeeec
Q 016605 194 GLTAYNH 200 (386)
Q Consensus 194 G~~~v~i 200 (386)
|+++|.+
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 8888876
No 343
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=77.22 E-value=39 Score=31.38 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHc-----CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC---cEEEEecCC-CCHHHHHHHHHh
Q 016605 123 TKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVCCTLGM-LEKHQAIELKKA 193 (386)
Q Consensus 123 s~eeI~~~~~~~~~~-----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g---~~i~~t~g~-l~~e~l~~Lk~a 193 (386)
+.+++.+.++.+.+. .-..+++.|.|++- + ....+..+=..+++.+ +-+.+--|. .-++.+.+|++.
T Consensus 120 ~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h---~-an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~ 195 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPH---P-ANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKK 195 (262)
T ss_dssp SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SC---H-HHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCC---C-ccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhc
Confidence 466777666665532 12346677765432 1 1122222223334443 333333454 347889999999
Q ss_pred ccCeeec---ccCchHHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHH
Q 016605 194 GLTAYNH---NLDTSREFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (386)
Q Consensus 194 G~~~v~i---~le~~~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (386)
|+..|.+ -+=+.+-..+-+.+ ..||...+ .++|+.+.+ .+-|+||.++=..-.++.+
T Consensus 196 g~k~V~L~PlMlVAGdHa~nDmaGde~dSWks~L------~~~G~~v~~-~l~GLGE~~~i~~ifi~hl 257 (262)
T PF06180_consen 196 GIKKVHLIPLMLVAGDHAKNDMAGDEEDSWKSRL------EAAGFEVTC-VLKGLGEYPAIQQIFIEHL 257 (262)
T ss_dssp T-SEEEEEEESSS--HHHHCCCCSSSTTSHHHHH------HHTT-EEEE-----GGGSHHHHHHHHHHH
T ss_pred CCCeEEEEecccccchhhhhhhcCCCcchHHHHH------HHCCCEEEE-EeccCcCCHHHHHHHHHHH
Confidence 9888764 22222555555654 34787544 678998755 7789999865443333443
No 344
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=77.21 E-value=43 Score=31.06 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=14.0
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCe
Q 016605 212 IITTRSYDERLETLKHVREAGIN 234 (386)
Q Consensus 212 i~~~~s~~~~l~~i~~a~~~Gi~ 234 (386)
+..+.+.++.++.++.+++.+..
T Consensus 72 L~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 72 LAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHCCCCHHHHHHHHHHHHhcCCC
Confidence 34455666666666666665544
No 345
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=77.20 E-value=41 Score=29.51 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
-+.+++. ++.+.|++-+.+-+-.++ .| +.+.++++++|+.+..+.. ...+.|....-.++|+|.|.--
T Consensus 52 PT~~ev~----~l~~aGadIIAlDaT~R~---Rp---~~l~~li~~i~~~~~l~MA--Dist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 52 PTLKEVD----ALAEAGADIIALDATDRP---RP---ETLEELIREIKEKYQLVMA--DISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp -SHHHHH----HHHHCT-SEEEEE-SSSS----S---S-HHHHHHHHHHCTSEEEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred CCHHHHH----HHHHcCCCEEEEecCCCC---CC---cCHHHHHHHHHHhCcEEee--ecCCHHHHHHHHHcCCCEEEcc
Confidence 4555555 556689988888653221 23 6788888899876643333 3456788888899999999988
Q ss_pred cCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 202 LDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 202 le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
+-++ +..-. ..+ -++.++.+.+.++++ +.=|.-.++++..+.+
T Consensus 120 LsGYT~~t~~-----~~p--D~~lv~~l~~~~~pv---IaEGri~tpe~a~~al 163 (192)
T PF04131_consen 120 LSGYTPYTKG-----DGP--DFELVRELVQADVPV---IAEGRIHTPEQAAKAL 163 (192)
T ss_dssp TTTSSTTSTT-----SSH--HHHHHHHHHHTTSEE---EEESS--SHHHHHHHH
T ss_pred cccCCCCCCC-----CCC--CHHHHHHHHhCCCcE---eecCCCCCHHHHHHHH
Confidence 8776 43221 222 245666777776662 2224445777665554
No 346
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.13 E-value=55 Score=31.75 Aligned_cols=185 Identities=15% Similarity=0.237 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC-C--CCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD-T--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~-~--~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+.+++++.++.+++.|++ +...|.+.| + ++....-+.-++++++++ +.|+.+.++. .+.+.++.+.+. +|.+
T Consensus 113 s~eq~l~~A~~lk~~g~~-~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev--~d~~~v~~~~~~-~d~l 188 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAK-FLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEV--MDAADLEKIAEV-ADVI 188 (352)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEee--CCHHHHHHHHhh-CCeE
Confidence 678999999999998875 444444333 1 111111156677777776 6799876654 678889999888 8888
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.++--.. .+ ..-++.+.+.|.+|.. =-|+.-|.+|+...++.+..-| + ..+.+. ..|+
T Consensus 189 qIga~~~----------~n----~~LL~~va~t~kPVll--k~G~~~t~ee~~~A~e~i~~~G-n-~~viL~----erG~ 246 (352)
T PRK13396 189 QVGARNM----------QN----FSLLKKVGAQDKPVLL--KRGMAATIDEWLMAAEYILAAG-N-PNVILC----ERGI 246 (352)
T ss_pred EECcccc----------cC----HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC-C-CeEEEE----ecCC
Confidence 8854221 11 1334555556655322 1244458999999999998776 2 223221 2233
Q ss_pred C-CC-CCCCCCHHHHHHHHHHHHHhCCC-cceeec--CcccccChhHHHhhhhcCccccccC
Q 016605 279 P-LQ-DQKPVEIWEMIRMIATARIVMPK-AMVRLS--AGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 279 ~-l~-~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
. +. ..+.. .-+ ++.+...|....- .++..+ .|+-.+.+.....++.+||+.++.+
T Consensus 247 rtf~s~y~~~-~~d-l~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE 306 (352)
T PRK13396 247 RTFDRQYTRN-TLD-LSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIE 306 (352)
T ss_pred ccCcCCCCCC-CcC-HHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEE
Confidence 1 11 11111 111 3334444544321 111222 3443334566777889999988654
No 347
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=77.12 E-value=22 Score=31.85 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC---CCCHHHHHHHHHHHHHcCCe
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT---TRSYDERLETLKHVREAGIN 234 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~ 234 (386)
.+.+.+.+++++..|++++.-.. -+++.++.-++.|.++|-+.---+.+.++.--+ ..-+++.-++.+.+.+.|+.
T Consensus 110 ~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~ 188 (243)
T COG0854 110 LDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGLK 188 (243)
T ss_pred hhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 57899999999999999754332 578999999999999987532111110100000 01233445566667777888
Q ss_pred eeEeEEeecCCCHHHHHHH
Q 016605 235 VCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 235 v~~~~i~Glget~ed~~~~ 253 (386)
|+. |+|-|...+..+
T Consensus 189 VnA----GHgLty~Nv~~~ 203 (243)
T COG0854 189 VNA----GHGLTYHNVKPL 203 (243)
T ss_pred Eec----CCCccccchHHH
Confidence 776 455554444443
No 348
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=77.11 E-value=42 Score=32.56 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCHHHHHH----HHHHHHHcCCcEE-EEeccc-CCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQ----AAQKAKEAGSTRF-CMGAAW-RDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~----~~~~~~~~G~~~v-~l~~g~-~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~ 192 (386)
++.+|+++ .++.+++.|..-. .+.... .+..+ ....+++.++++.+.+.|.. ++-|.|..++..+..+.+
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~-r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~ 233 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG-PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLE 233 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC-CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHH
Confidence 56777776 4445566775421 232111 12222 35678899999999888765 345789888777766644
Q ss_pred hc---cCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 193 AG---LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 193 aG---~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
+= ++.+.+++ +...++.-.+...-.+.++|...--..+-|+|+
T Consensus 234 ~l~~~~~~~~i~~----------H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 234 AVMAVVPVDKLAV----------HFHDTYGQALANILVSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred HHHHhCCCCeEEE----------EECCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 31 11111211 212234444455556678898755556667765
No 349
>PTZ00124 adenosine deaminase; Provisional
Probab=76.96 E-value=26 Score=34.21 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCcEEEEecCCC----C-HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 016605 159 NQILEYVKDIRDMGMEVCCTLGML----E-KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGI 233 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~i~~t~g~l----~-~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi 233 (386)
..+.+.++.+++.|+.+.++.|.. + .+..+.+...|.++|.+|+... .+ -+.++.+++.+|
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~----------~d----~~l~~~l~~~~I 271 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA----------ES----QELIDMVKEKDI 271 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC----------CC----HHHHHHHHHcCC
Confidence 445555666666666655555531 1 2344555556677776666443 01 245677788887
Q ss_pred eee----EeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 234 NVC----SGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 234 ~v~----~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
.+. +++..|.-.+.++ .-+..+.+.|
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~--HPi~~l~~~G 301 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDT--HPIRKLYDAG 301 (362)
T ss_pred eEEECCcchhhhhcCCchhh--HHHHHHHHCC
Confidence 643 4555554333222 2244555554
No 350
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=76.78 E-value=66 Score=30.11 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.+-+...++.+.+.+.. +.|+.+ +... -..++.+..+++.+. +..++++++... .+.+.+.+-.++|+++|
T Consensus 21 ~n~e~~~avi~AAe~~~sP-vIi~~~~~~~~---~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSV 96 (276)
T cd00947 21 NNLETLKAILEAAEETRSP-VILQISEGAIK---YAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSV 96 (276)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcCcchhh---hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEE
Confidence 4667777777777777754 445432 1111 123566777777665 457777776554 46788888889999888
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--EeEEeecCCC-------HHHHHHHHHHHhcCCCCCCeEee
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA-------EEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~--~~~i~Glget-------~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
-++--.++ + ..+.+...+..+.+|..|+.|. .+.+-|..+. .-+..+..+|+++.+ +|.+.+
T Consensus 97 MiD~S~l~--~-----eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~Tg--vD~LAv 167 (276)
T cd00947 97 MIDGSHLP--F-----EENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETG--VDALAV 167 (276)
T ss_pred EeCCCCCC--H-----HHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHC--CCEEEe
Confidence 87543321 0 1134455678889999998754 4555544211 123566677777775 565544
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
..=+-+...+ ...+.++.+.+.++.... +..+-+ .|--++..+.-..+...|++-+
T Consensus 168 siGt~HG~Y~-~~~p~L~~~~L~~i~~~~-----~vPLVl-HGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 168 AIGTSHGAYK-GGEPKLDFDRLKEIAERV-----NVPLVL-HGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred ccCccccccC-CCCCccCHHHHHHHHHHh-----CCCEEE-eCCCCCCHHHHHHHHHcCCeEE
Confidence 3311111111 112344555433333322 111111 1222344444466788888876
No 351
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=76.40 E-value=48 Score=31.88 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeeEeEEeec-C-CCHHHHHHHHHHHh
Q 016605 186 QAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCSGGIIGL-G-EAEEDRVGLLHTLA 258 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-g-et~ed~~~~l~~l~ 258 (386)
.++.++++|+|.|.++.-.. +...+.-.+ -.+++...+.++.+++. ++.+.+-+=+|. + ++.++..+++..+.
T Consensus 82 aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~ 161 (333)
T PRK11815 82 AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVA 161 (333)
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHH
Confidence 34445556677666665333 222111001 12455666666666653 666666555665 3 45667788888888
Q ss_pred cCCCCCCeEeee
Q 016605 259 TLPTHPESVPIN 270 (386)
Q Consensus 259 ~l~~~~~~v~~~ 270 (386)
+.| ++.+.++
T Consensus 162 ~aG--~d~i~vh 171 (333)
T PRK11815 162 EAG--CDTFIVH 171 (333)
T ss_pred HhC--CCEEEEc
Confidence 876 6666665
No 352
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.28 E-value=55 Score=34.22 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE----EEecC-CCC----HHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV----CCTLG-MLE----KHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i----~~t~g-~l~----~e~l~~Lk~ 192 (386)
.+.+-|...++.+.+.|++.|-+... -.+.+.+...++.+|+.|..+ |.+.. ..+ .+.++.+.+
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd~-------lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~ 165 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFDA-------LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAE 165 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEccc-------CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 44555555777788888877655432 134567777788888777652 23322 223 345666677
Q ss_pred hccCeeec
Q 016605 193 AGLTAYNH 200 (386)
Q Consensus 193 aG~~~v~i 200 (386)
+|++.|.+
T Consensus 166 ~Gad~I~I 173 (596)
T PRK14042 166 MGCDSIAI 173 (596)
T ss_pred cCCCEEEe
Confidence 88888876
No 353
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=76.22 E-value=75 Score=30.46 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
+.++...+.|+..+.+.-.+.... .|..| +.+.++++.+++. +..+....|. +...++.+++.|++.++++
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~l-sp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~-~~~~~~~~~~~~~~~~s~d 261 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGAL-SPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKG-AGHLLEELAETGADVVGLD 261 (338)
T ss_pred HHHHHHHHcCCCEEEEECCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC-cHHHHHHHHhcCCCEEEeC
Confidence 334444567887665542211222 23333 4455666777764 4444333332 3568999999999888764
No 354
>PLN02591 tryptophan synthase
Probab=76.13 E-value=65 Score=29.69 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeee-
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYN- 199 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~- 199 (386)
..|... +.+++.|++.+.+. ++.+++..++.+.+++.|+. + ++++ ..+++.++.+.+..-..++
T Consensus 94 G~~~F~---~~~~~aGv~Gviip---------DLP~ee~~~~~~~~~~~gl~~I~lv~P-tt~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 94 GIDKFM---ATIKEAGVHGLVVP---------DLPLEETEALRAEAAKNGIELVLLTTP-TTPTERMKAIAEASEGFVYL 160 (250)
T ss_pred HHHHHH---HHHHHcCCCEEEeC---------CCCHHHHHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHhCCCcEEE
Confidence 345554 45667899988764 24568888888889999988 3 3433 3457778888776544444
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCC-HHHHHHHH
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA-EEDRVGLL 254 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget-~ed~~~~l 254 (386)
++..+..- .+....+...+.++.+++. ...-+++|+|-+ .+++...+
T Consensus 161 Vs~~GvTG-----~~~~~~~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 161 VSSTGVTG-----ARASVSGRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred eeCCCCcC-----CCcCCchhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHH
Confidence 34433200 0112234445557777773 345567788654 77766644
No 355
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=75.77 E-value=48 Score=27.98 Aligned_cols=107 Identities=26% Similarity=0.369 Sum_probs=65.4
Q ss_pred HHHHHH-HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEe-------cC--CCCHHHHHHHHH
Q 016605 124 KDAVMQ-AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCT-------LG--MLEKHQAIELKK 192 (386)
Q Consensus 124 ~eeI~~-~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t-------~g--~l~~e~l~~Lk~ 192 (386)
.++.++ .++.+.+.|++.+++-+. .|. .--.++++++. .+++ .+| .| .+++|.-+.|++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~----tG~--tA~k~lemveg----~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASS----TGY--TALKALEMVEG----DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEec----ccH--HHHHHHHhccc----CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 445555 446778899999987542 232 12234444332 1331 121 22 268999999999
Q ss_pred hccCeee--cccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe
Q 016605 193 AGLTAYN--HNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (386)
Q Consensus 193 aG~~~v~--i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~ 241 (386)
-|.+.+. +.+.+. +.+.+++..-...+-.-++++ +-..|++|+..+.+
T Consensus 82 rGa~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEIti 132 (186)
T COG1751 82 RGAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEITI 132 (186)
T ss_pred cCceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEEEE
Confidence 9987765 456666 556666655455666677777 66778887766554
No 356
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.62 E-value=35 Score=31.87 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-------CChhhHHHHHHHHHHHhhcCcEE--EEecCC---------CC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-------GRKTNFNQILEYVKDIRDMGMEV--CCTLGM---------LE 183 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-------ge~~~~~~l~~~i~~ik~~g~~i--~~t~g~---------l~ 183 (386)
.+.+...+.++.+.+.|+..+.+-.||.... -.+..-.++.++++..++.|+.+ ..+... -.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 7899999999999999999998877774210 01122367899999999888654 333211 12
Q ss_pred HHHHHHHHHhccCeeeccc-Cch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE
Q 016605 184 KHQAIELKKAGLTAYNHNL-DTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG 239 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~l-e~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 239 (386)
++.++.+++.|+..|-++. +.- .+ ..+-..+.++.|.+.++-|+.+-
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~---------~v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQE---------MVNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHH---------HHHHHHHHHHHHHHTT-EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHH---------HHHHHHHHHHHHHHcCcEEEecC
Confidence 8889999999998888753 221 11 12333466788888888777653
No 357
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=75.49 E-value=78 Score=30.30 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCC-CCCChhhH-----HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNF-----NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~-~~ge~~~~-----~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++...+.|+.-+.+...+.. +.-.|..+ +.+.++++.+++. ..+.-..|. ....++.+++.|++.+++
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~-~~~~l~~~~~~g~d~~~~ 259 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGD-LTSILEEMADCGFDGISI 259 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCC-chHHHHHHHhcCCCeecc
Confidence 34445556779887766432211 11123333 3334455555543 223223454 356789999999988765
No 358
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=75.43 E-value=63 Score=30.13 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcE--EEEe--cCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~--i~~t--~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++.+.+.++.+.+.|++.|++. ++.|- ...+.+.++++.+++ .+++ ++.+ .|.-....+..+ ++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~----DT~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~-~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIK----DMAGL-LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAA-EAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc----CCCCC-CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHH-HhCCC
Confidence 356666666666666777666663 12221 122445555555542 2222 2332 344344444444 46777
Q ss_pred eeecccCch
Q 016605 197 AYNHNLDTS 205 (386)
Q Consensus 197 ~v~i~le~~ 205 (386)
.+..++-++
T Consensus 220 ~vd~sv~Gl 228 (275)
T cd07937 220 IVDTAISPL 228 (275)
T ss_pred EEEEecccc
Confidence 766666554
No 359
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=75.25 E-value=17 Score=32.92 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=65.8
Q ss_pred EEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE-------eec-CC-C
Q 016605 176 CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-------IGL-GE-A 246 (386)
Q Consensus 176 ~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i-------~Gl-ge-t 246 (386)
.++++..-.|.+..-|++|.|.|-+++|-.++.+.++ .=+-+++++.++.+.+.|+.+.+-++ +|. .+ +
T Consensus 13 Alp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~ 90 (287)
T COG3623 13 ALPNGFSWLERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEAT 90 (287)
T ss_pred hccCCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHH
Confidence 3556777899999999999999999999986655554 23667888888999999988665444 343 22 1
Q ss_pred H----HHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 247 E----EDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 247 ~----ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
. +=...-+.+.++|| +..|.+-.|-
T Consensus 91 r~~aleiM~KaI~LA~dLG--IRtIQLAGYD 119 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLG--IRTIQLAGYD 119 (287)
T ss_pred HHHHHHHHHHHHHHHHHhC--ceeEeeccce
Confidence 1 22244466778886 6677665553
No 360
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=75.22 E-value=61 Score=30.04 Aligned_cols=108 Identities=16% Similarity=0.297 Sum_probs=56.5
Q ss_pred CCHHHHHHHH----HHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHh-
Q 016605 122 MTKDAVMQAA----QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 122 ~s~eeI~~~~----~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~a- 193 (386)
++.+|.++.+ +.+++.|.. +.+... ...+. ..+.+.++++.+.+.|.. +.-|.|..+++.+..+.+.
T Consensus 105 ~~~~e~~~~~~~~i~~a~~~G~~-v~~~~e--da~r~--~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 105 KSITEIIESAVEVIEFVKSKGIE-VRFSSE--DSFRS--DLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEEE--eeCCC--CHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 4555544444 566667753 444321 11122 256788888888777655 3446788877776655332
Q ss_pred --ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 194 --GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 194 --G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
..+ +.+++ +...++.-.+...-.+.++|...--..+.|+|+
T Consensus 180 ~~~~~-~~i~~----------H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe 222 (262)
T cd07948 180 RGVVS-CDIEF----------HGHNDTGCAIANAYAALEAGATHIDTTVLGIGE 222 (262)
T ss_pred HHhcC-CeEEE----------EECCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 111 23322 111122222333334457888765556777766
No 361
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.06 E-value=44 Score=30.85 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 158 FNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 158 ~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.+.++.+++. +.++.+-.|..+.+.++.+.++|+|.+-++
T Consensus 183 ~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 183 ASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35677777777753 556777777777888888888888887765
No 362
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=74.99 E-value=16 Score=33.06 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHH-HHHhccCeeecc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIE-LKKAGLTAYNHN 201 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~-Lk~aG~~~v~i~ 201 (386)
+..+.++.+.+.|+..+.+.+-...-..+.. -+++++++++ .++++....|..+.+.++. +++.|++.+.++
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~----~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGTMKGY----DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCCcCCC----CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 3456667777889999887652211001111 2556666663 4778888888888888888 999999998764
No 363
>PRK15452 putative protease; Provisional
Probab=74.88 E-value=66 Score=32.34 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=70.0
Q ss_pred HHHHHHHcCCcEEEEecccCCCC--CChhhHHHHHHHHHHHhhcCcEEEEe-cCCCCHH-------HHHHHHHhccCeee
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTI--GRKTNFNQILEYVKDIRDMGMEVCCT-LGMLEKH-------QAIELKKAGLTAYN 199 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~--ge~~~~~~l~~~i~~ik~~g~~i~~t-~g~l~~e-------~l~~Lk~aG~~~v~ 199 (386)
.++.+.+.|++.|++++.....- ..+...+++.+.++.+++.|.++.++ |....++ .++.+.++|+|.+.
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvI 94 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALI 94 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 34466678999998865321110 11234577888888888888886444 3333332 25667788999888
Q ss_pred cc-cCchHHHHhhhCCC---C-C---HHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHH
Q 016605 200 HN-LDTSREFYSKIITT---R-S---YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (386)
Q Consensus 200 i~-le~~~~~~~~i~~~---~-s---~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (386)
++ +..+.- .+...+. + + .-.-..+++.+.+.|+. .+++...-|.+++.++.+..
T Consensus 95 V~d~G~l~~-~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~---rvvLSrELsl~EI~~i~~~~ 156 (443)
T PRK15452 95 MSDPGLIMM-VREHFPEMPIHLSVQANAVNWATVKFWQQMGLT---RVILSRELSLEEIEEIRQQC 156 (443)
T ss_pred EcCHHHHHH-HHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc---EEEECCcCCHHHHHHHHhhC
Confidence 74 322221 1111111 0 1 11123567788888873 23333455888888776443
No 364
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=74.84 E-value=17 Score=32.55 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
++.+++...++.+.+.|.+-+-..+|..+ .| ...+++..+.+.++. .+.+-..-|..+.+.+..|.++|.+++..
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~-~g--at~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGA-GG--ATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCC-CC--CCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 44466666666666777765555444322 11 122332222222222 34455556666777777777777766543
No 365
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=74.74 E-value=57 Score=33.03 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcE--EEEe--cCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~--i~~t--~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++.+++.++++.+.|++.|++- ++.|- ..-..+.++++.+|+ .+++ ++++ .|.-....+..+ ++|++
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~----Dt~G~-l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAi-eaGad 223 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIK----DMAGL-LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAV-EAGAD 223 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC----CccCC-cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHH-HhCCC
Confidence 468999999999999999999883 22221 233567777777763 3433 3443 455555555554 78999
Q ss_pred eeecccCch
Q 016605 197 AYNHNLDTS 205 (386)
Q Consensus 197 ~v~i~le~~ 205 (386)
.+..++.++
T Consensus 224 ~vD~sv~~~ 232 (467)
T PRK14041 224 MFDTAISPF 232 (467)
T ss_pred EEEeecccc
Confidence 999888765
No 366
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=74.69 E-value=76 Score=29.84 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=106.4
Q ss_pred CCcEEEEeccc------CCCCCChhhHHHHHHHHHHHhh-cCcEEEE--ecCCCCH----HHHHHHHHhccCeeecccCc
Q 016605 138 GSTRFCMGAAW------RDTIGRKTNFNQILEYVKDIRD-MGMEVCC--TLGMLEK----HQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 138 G~~~v~l~~g~------~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~--t~g~l~~----e~l~~Lk~aG~~~v~i~le~ 204 (386)
|++.+.++|.+ .+. ++-..++++++.++.+.. ..+++.+ ..| .+. ..++++.++|+..+++-=+.
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD-~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~ 115 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPD-IEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKL 115 (285)
T ss_pred CcCEEEechHHHHHHCCCCC-cCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccC
Confidence 77777765432 222 223457888888888764 3566443 345 443 44778888999888874333
Q ss_pred hHHHHhhhCC-----CCCHHHHHHHHHHHHHcCCeeeEeEEee----c-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 205 SREFYSKIIT-----TRSYDERLETLKHVREAGINVCSGGIIG----L-GEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 205 ~~~~~~~i~~-----~~s~~~~l~~i~~a~~~Gi~v~~~~i~G----l-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
.+...-.... -.+.++..+.|+.++++.-...+-++.. . +...++..+-.+...+.| .+.+.+ |
T Consensus 116 ~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG--AD~ifv----~ 189 (285)
T TIGR02320 116 GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAG--ADGIMI----H 189 (285)
T ss_pred CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcC--CCEEEe----c
Confidence 3211000111 1267888888888877621112222222 1 345677777788888886 555433 2
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceee-cCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL-SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i-~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i 353 (386)
+ ...+.+++.++....+.++|+..+-+ .+....+. ....-..|++.+..+.......-....+...-+
T Consensus 190 --~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~---~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~ 258 (285)
T TIGR02320 190 --S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTP---TDEFRDAGISVVIYANHLLRAAYAAMQQVAERI 258 (285)
T ss_pred --C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCC---HHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHH
Confidence 1 12367777777776665555532222 11111111 123345688888665422222222334444555
Q ss_pred HHcCC
Q 016605 354 KVLGL 358 (386)
Q Consensus 354 ~~~G~ 358 (386)
.+.|-
T Consensus 259 ~~~g~ 263 (285)
T TIGR02320 259 LEHGR 263 (285)
T ss_pred HHcCC
Confidence 55553
No 367
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.36 E-value=58 Score=30.60 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC---------------CCCHHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG---------------MLEKHQA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g---------------~l~~e~l 187 (386)
+.|.+.+ +.+.|++.|-+-|... +. ..+.+...+.++..+..|+.+....| .-+++.+
T Consensus 86 ~~e~i~~----Ai~~GftSVM~DgS~l-~~--eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a 158 (283)
T PRK07998 86 TFEDVKQ----AVRAGFTSVMIDGAAL-PF--EENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKV 158 (283)
T ss_pred CHHHHHH----HHHcCCCEEEEeCCCC-CH--HHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHH
Confidence 5555554 4567999997755421 11 24566777777777777765422211 1245555
Q ss_pred HHH-HHhccCeeecccCch
Q 016605 188 IEL-KKAGLTAYNHNLDTS 205 (386)
Q Consensus 188 ~~L-k~aG~~~v~i~le~~ 205 (386)
.++ ++.|+|.+-+++-+.
T Consensus 159 ~~Fv~~TgvD~LAvaiGt~ 177 (283)
T PRK07998 159 KDFVERTGCDMLAVSIGNV 177 (283)
T ss_pred HHHHHHhCcCeeehhcccc
Confidence 555 567999998877665
No 368
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=74.27 E-value=78 Score=29.76 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.|.+...++.+.+.+.. +.++.+. .. ..-...+.+..+++.+. +..++++++... .+.+.+++-.++|+++|-
T Consensus 26 ~n~e~~~avi~AAee~~sP-vIiq~~~-~~-~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 26 HNLETLQVVVETAAELRSP-VILAGTP-GT-FSYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcCc-cH-HhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEE
Confidence 4567778888888777764 4444321 00 00123456777666654 567788777654 467888888899999877
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--EeEEeecCCC---------HHHHHHHHHHHhcCCCCCCeEe
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA---------EEDRVGLLHTLATLPTHPESVP 268 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~--~~~i~Glget---------~ed~~~~l~~l~~l~~~~~~v~ 268 (386)
+.--.++ . ..+.+...+..+.+|..|+.|. .+.+-|..+. .-+..+..+|+++.| +|.+-
T Consensus 103 iDgS~lp-~------eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tg--vD~LA 173 (284)
T PRK12737 103 IDGSHLS-F------EENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTG--IDSLA 173 (284)
T ss_pred ecCCCCC-H------HHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhC--CCEEe
Confidence 6433321 0 1134455678889999998765 4455444111 114466677777776 55544
Q ss_pred eeeeeecCCCCCC---CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 269 INALLAVKGTPLQ---DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 269 ~~~f~P~~gT~l~---~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+.. ||.-+ ..|.++.+.+.++-+ ..+ ..+-+ .|--++..+.-..++..|++-+
T Consensus 174 vai-----Gt~HG~y~~~p~Ld~~~L~~I~~----~~~-iPLVl-HGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 174 VAI-----GTAHGLYKGEPKLDFERLAEIRE----KVS-IPLVL-HGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred ecc-----CccccccCCCCcCCHHHHHHHHH----HhC-CCEEE-eCCCCCCHHHHHHHHHCCCeEE
Confidence 433 33211 223445554333322 221 11111 1212334444566788898877
No 369
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=73.98 E-value=65 Score=29.16 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC--CCCHHHHHHHHHhccCeeecc
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG--MLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g--~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+-+.+.++.+++.|++.|+++.-. ..| ....+.+-++++....+++..+--.. .-..+.++.|.+.|+.+|.-+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt--~dg-~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT--ADG-NIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec--CCC-ccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 4556677778889999999886422 112 35566677777666544433211111 115778999999999998753
Q ss_pred cCchHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHH
Q 016605 202 LDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTL 257 (386)
Q Consensus 202 le~~~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (386)
=. ..+..+-+..++.+.+ ++ =.+.+|.|-|-+.+.+.++....
T Consensus 149 Gg-----------~~sa~eg~~~l~~li~~a~--gri~Im~GaGV~~~N~~~l~~~t 192 (241)
T COG3142 149 GG-----------KASALEGLDLLKRLIEQAK--GRIIIMAGAGVRAENIAELVLLT 192 (241)
T ss_pred CC-----------cCchhhhHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHhc
Confidence 21 1223333333333333 22 24557888888887777665444
No 370
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=73.95 E-value=59 Score=32.72 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcE--EEEe--cCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~--i~~t--~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++-+++.++++.+.|++.|++- ++.|- ..-..+.++++.+|+ .+++ ++++ .|.-....+..+ ++|++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~----Dt~G~-l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAi-eaGad 224 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIK----DMAGI-LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAI-EAGAD 224 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc----CCCCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHH-HcCCC
Confidence 578899999999999999999883 22221 233567777777774 3444 3343 455455555554 78999
Q ss_pred eeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCee
Q 016605 197 AYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINV 235 (386)
Q Consensus 197 ~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v 235 (386)
.+..++.++ +. .++ +.+..+.++ +..|+.+
T Consensus 225 ~vD~sv~glg~g------aGN~~tE~lv~~L---~~~g~~t 256 (448)
T PRK12331 225 IIDTAISPFAGG------TSQPATESMVAAL---QDLGYDT 256 (448)
T ss_pred EEEeeccccCCC------cCCHhHHHHHHHH---HhcCCCC
Confidence 999888765 31 222 456555544 4456653
No 371
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=73.93 E-value=80 Score=29.70 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--------C---------CCCHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--------G---------MLEKH 185 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--------g---------~l~~e 185 (386)
+.|.+. .+.+.|++.|-+-++. .++ ..+.+...+.++.++..|+.+.... + .-+++
T Consensus 86 ~~e~i~----~ai~~GftSVMiDgS~-lp~--eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~pe 158 (284)
T PRK12737 86 DLDDIK----KKVRAGIRSVMIDGSH-LSF--EENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPD 158 (284)
T ss_pred CHHHHH----HHHHcCCCeEEecCCC-CCH--HHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHH
Confidence 455544 5566799998775543 221 2466677777777777666532211 1 12455
Q ss_pred HHHHH-HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHH
Q 016605 186 QAIEL-KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGL 253 (386)
Q Consensus 186 ~l~~L-k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~ 253 (386)
.++++ ++-|+|.+.+++-+.--.|+. .+.-+++ +++.|+... ++++ ++-|- |-.++++.+.
T Consensus 159 eA~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~~--~iPL---VlHGgSG~~~e~~~ka 221 (284)
T PRK12737 159 AAAEFVERTGIDSLAVAIGTAHGLYKG-EPKLDFE-RLAEIREKV--SIPL---VLHGASGVPDEDVKKA 221 (284)
T ss_pred HHHHHHHHhCCCEEeeccCccccccCC-CCcCCHH-HHHHHHHHh--CCCE---EEeCCCCCCHHHHHHH
Confidence 65555 457999999888665333432 2333565 333333322 5544 33344 5555555444
No 372
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.92 E-value=25 Score=31.87 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++.++.+ .+.+. ++.+++..-.....|.+.++ ++++.+. ..++++.+.-|..+.+.++.|.++|++.+.++
T Consensus 31 dp~~~a~---~~~~~-~~~l~ivDldga~~g~~~n~----~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIAL---RFSEY-VDKIHVVDLDGAFEGKPKNL----DVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHH---HHHHh-CCEEEEEECcchhcCCcchH----HHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 5555544 44444 77777643111111323344 3444443 34677888899999999999999999999887
Q ss_pred cCch
Q 016605 202 LDTS 205 (386)
Q Consensus 202 le~~ 205 (386)
-.++
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 5443
No 373
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=73.89 E-value=24 Score=32.94 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC---------------CC--ChhhHHHHHHHHHHHhh-c--CcEEEEecCC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIRD-M--GMEVCCTLGM 181 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~---------------~g--e~~~~~~l~~~i~~ik~-~--g~~i~~t~g~ 181 (386)
.+.+++.+.++.+.+.|++.+.+.++.... .| .+.....-++.++.+++ . ++++..+.|.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 567788888888888898888765431100 00 01112334666777764 3 5778888888
Q ss_pred CCHHHHHHHHHhccCeeecc
Q 016605 182 LEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 182 l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.+.++..+|++.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 88888888888998888764
No 374
>PRK04326 methionine synthase; Provisional
Probab=73.72 E-value=69 Score=30.58 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCC-CChhhHHHHHHHHHHHhh-cCcEEE--EecCCCCHHHHHHHHHhccCeeecccC
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIRD-MGMEVC--CTLGMLEKHQAIELKKAGLTAYNHNLD 203 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~~~~~l~~~i~~ik~-~g~~i~--~t~g~l~~e~l~~Lk~aG~~~v~i~le 203 (386)
.+.++.+.+.|++.+.+- .|.. ..+..++.+.+.++.+-+ .+..+. +.-|. ..+.+..|.+.|++.+++...
T Consensus 164 ~~~i~~l~~~G~~~iqid---EP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~-~~~~~~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 164 NEEIKNLVEAGAKYIQID---EPALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGD-YSRIAPYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHHHHHHCCCCEEEec---CchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCC-cHHHHHHHHhCCCCEEEEEeC
Confidence 344556667888655443 2211 123344555566655542 344432 22254 456789999999999998553
Q ss_pred chHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeec---CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 204 TSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGL---GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 204 ~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Gl---get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.. .+ +.++.+++. |-.+..+++-+. -++.+++.+.++.+.+. .+. ..++..|+.
T Consensus 240 ~~-----------~~----~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~-~~~-----~~~~lsp~C 298 (330)
T PRK04326 240 NG-----------NY----KLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY-VPP-----EKLYINPDC 298 (330)
T ss_pred CC-----------Cc----hhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh-CCh-----hhEEECCCC
Confidence 21 11 233344554 434666666543 46888888888777652 112 234445555
Q ss_pred CCCCCC
Q 016605 279 PLQDQK 284 (386)
Q Consensus 279 ~l~~~~ 284 (386)
.+...+
T Consensus 299 gl~~~~ 304 (330)
T PRK04326 299 GLKLLP 304 (330)
T ss_pred CCCcCC
Confidence 554443
No 375
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=73.71 E-value=67 Score=28.74 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe----cCCCC-HHH---HHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE-KHQ---AIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~l~-~e~---l~~Lk~a 193 (386)
.+.++|.+.++++.+.++..+|+. |.+.+...+.+ +..++.+++- .|..+ +.. .+...+.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~---------p~~v~~a~~~l---~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN---------PSYVPLAKELL---KGTEVRICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC---------HHHHHHHHHHc---CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 799999999999999999988873 33344443333 3445554433 34332 222 3444556
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
|.|.+.+-+.-. .+ ..+.++...+-|..+.++ |+.+.+-+=.|. -+.+++....+...+.| .+++....
T Consensus 83 GAdEiDvv~n~g-----~l-~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~~ei~~a~~ia~eaG--ADfvKTsT 153 (211)
T TIGR00126 83 GADEVDMVINIG-----AL-KDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTDEEIRKACEICIDAG--ADFVKTST 153 (211)
T ss_pred CCCEEEeecchH-----hh-hCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCHHHHHHHHHHHHHhC--CCEEEeCC
Confidence 988887655321 11 245677777777766654 665555222233 56688888889999997 77766531
Q ss_pred -eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 272 -LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 272 -f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
|.| ...+.++...+....+ ...-+..++|--+ .+.....+.+||+.+
T Consensus 154 Gf~~---------~gat~~dv~~m~~~v~---~~v~IKaaGGirt--~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 154 GFGA---------GGATVEDVRLMRNTVG---DTIGVKASGGVRT--AEDAIAMIEAGASRI 201 (211)
T ss_pred CCCC---------CCCCHHHHHHHHHHhc---cCCeEEEeCCCCC--HHHHHHHHHHhhHHh
Confidence 222 2234554333322222 2334455554322 233455667888887
No 376
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.67 E-value=75 Score=29.90 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCC----------------CHHHHHHHH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML----------------EKHQAIELK 191 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l----------------~~e~l~~Lk 191 (386)
.+.+..+.+.|++.|-+-|+..+. ..+.+...+.++..+..|+.+....|.+ .++..+..+
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~lp~---eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~ 166 (285)
T PRK07709 90 FEKCKEAIDAGFTSVMIDASHHPF---EENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE 166 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHH
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 255 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 255 (386)
+-|+|.+.+++-+.--.|+. .+.-+++..-+.-+.. ++++ ++-|- |-.++++.+.+.
T Consensus 167 ~TgvD~LAvaiGt~HG~Y~~-~p~L~~~~L~~I~~~~---~iPL---VLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 167 ATGIDCLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT---GVPL---VLHGGTGIPTADIEKAIS 224 (285)
T ss_pred HhCCCEEEEeecccccCcCC-CCccCHHHHHHHHHHH---CCCE---EEeCCCCCCHHHHHHHHH
No 377
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.62 E-value=20 Score=34.64 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC---------------CCCChhhHHHHHHHHHHHhh-c--CcEEEEecCCCC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~---------------~~ge~~~~~~l~~~i~~ik~-~--g~~i~~t~g~l~ 183 (386)
.+.+++.+.++.+.+.|++.+.+.+.... ..| +..+..-++.++.+++ . ++++..+-|..+
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG-~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s 300 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG-RPLFERSTEVIRRLYKELGGRLPIIGVGGIDS 300 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc-HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 55678888889888899998887653210 011 2233456667777764 3 477888889989
Q ss_pred HHHHHHHHHhccCeeecc
Q 016605 184 KHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.++..+|++.|.++
T Consensus 301 ~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 301 AEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 888888888999988764
No 378
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=73.62 E-value=25 Score=33.08 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC---------------CCC--ChhhHHHHHHHHHHHhh-cCcEEEEecCCCCH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIG--RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 184 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~---------------~~g--e~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~ 184 (386)
+.+++.+.++.+.+.|++.+.+.++... .+| .+...+..++.+..+++ .++++..+.|..+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~ 246 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSF 246 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCH
Confidence 4577888888888899988877532100 000 01122234566777764 47888888888899
Q ss_pred HHHHHHHHhccCeeecc
Q 016605 185 HQAIELKKAGLTAYNHN 201 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~ 201 (386)
+.+.++..+|+|.|.++
T Consensus 247 ~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 247 EDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHcCCCceeec
Confidence 99999888999988875
No 379
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=73.26 E-value=40 Score=32.40 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHc--CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC-CCCHHHHHHHHHhccCeeecccCch-
Q 016605 130 AAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS- 205 (386)
Q Consensus 130 ~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~- 205 (386)
.++.+.+. +++-+++-... | .-+..++.|+.+|+......+-.| ..+.+.++.|.++|+|.+-+++-..
T Consensus 111 r~~~L~~a~~~~d~iviD~Ah----G---hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGS 183 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVAN----G---YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGS 183 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCC----C---cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCC
Confidence 34444554 47777774321 2 336788999999865322223334 6899999999999999998775332
Q ss_pred HHHHhhhCC-C-CCHHHHHHHHHHHHHcCCeee
Q 016605 206 REFYSKIIT-T-RSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 206 ~~~~~~i~~-~-~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
--.-+.+.. + .....+.++.+.+++.++++-
T Consensus 184 icttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI 216 (343)
T TIGR01305 184 VCTTRTKTGVGYPQLSAVIECADAAHGLKGHII 216 (343)
T ss_pred cccCceeCCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 100011111 1 245555566666666666543
No 380
>PLN02433 uroporphyrinogen decarboxylase
Probab=73.17 E-value=92 Score=30.05 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhc--CcE-EEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GME-VCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~--g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++...+.|+..+.+.-.+.... .|..| +++.++++.+++. +.. +....|. ...++.+++.|++.++++
T Consensus 185 ~~~~ieaGa~~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~--~~~~~~~~~~~~~~i~~d 260 (345)
T PLN02433 185 VDYQIDAGAQVVQIFDSWAGHL-SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGS--GGLLERLAGTGVDVIGLD 260 (345)
T ss_pred HHHHHHcCCCEEEEecCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHhcCCCEEEcC
Confidence 3334467887665532221122 23333 4456677777754 343 3334554 277999999999987753
No 381
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.10 E-value=21 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 157 NFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
.++.+.+.++.++.. ++.+..+-|. +++.++.+.+.|+|.+++|-
T Consensus 212 ~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 212 SVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 556777777765532 3345555554 99999999999999999863
No 382
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=73.05 E-value=56 Score=31.34 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
..+.++.+.+.|++-+.+.... |.+ +...+.++.+++.+ +.+.. ....+.+.++.+.++|+|.|.+++-.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~----G~~---~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAH----GHS---VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----CCc---HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 3455666677899877764321 222 56778888888654 45433 23368899999999999999875422
Q ss_pred h-H-HHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 205 S-R-EFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 205 ~-~-~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
. . ........ ..++.-..+..+.+.+.++++-.+ |=-.+..++.+.+. +| .+.+.+
T Consensus 167 G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~---GGI~~~~di~kAla----~G--A~~Vmi 225 (325)
T cd00381 167 GSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIAD---GGIRTSGDIVKALA----AG--ADAVML 225 (325)
T ss_pred CcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec---CCCCCHHHHHHHHH----cC--CCEEEe
Confidence 1 0 00000001 124455555555566666663221 11124566666553 54 555555
No 383
>PLN02334 ribulose-phosphate 3-epimerase
Probab=72.91 E-value=72 Score=28.73 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
++..+.+.++.+.+.|++.+.+---+.. . .| ....=.+.++.+++. ...+.+..-. -..+.++.+.++|++.+.+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~-f-~~-~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v 94 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGH-F-VP-NLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF 94 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC-c-CC-ccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE
Confidence 4456777888888889988877211100 0 11 111001445555433 1111111100 1256788889999999976
Q ss_pred ccCc-hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 201 NLDT-SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 201 ~le~-~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
.++. . -+...+.++.+++.|+.++..+ ...|..+.. +.+...+ +++.+.+..+.| ++.
T Consensus 95 H~~q~~------------~d~~~~~~~~i~~~g~~iGls~---~~~t~~~~~---~~~~~~~-~~Dyi~~~~v~p--g~~ 153 (229)
T PLN02334 95 HIEQAS------------TIHLHRLIQQIKSAGMKAGVVL---NPGTPVEAV---EPVVEKG-LVDMVLVMSVEP--GFG 153 (229)
T ss_pred eecccc------------chhHHHHHHHHHHCCCeEEEEE---CCCCCHHHH---HHHHhcc-CCCEEEEEEEec--CCC
Confidence 5541 1 1223467778888887544433 122433322 2222221 156777777766 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
-.. ..+ ..+..+..++.+.++..+.+.+| +..+.-.....+||+.+..|..
T Consensus 154 ~~~---~~~-~~~~~i~~~~~~~~~~~I~a~GG---I~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 154 GQS---FIP-SMMDKVRALRKKYPELDIEVDGG---VGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred ccc---cCH-HHHHHHHHHHHhCCCCcEEEeCC---CCHHHHHHHHHcCCCEEEEChH
Confidence 111 122 22333444555554433333332 3444445677899999988863
No 384
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.77 E-value=80 Score=30.21 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHc-CCeeeEeEEeecC--CCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 217 SYDERLETLKHVREA-GINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 217 s~~~~l~~i~~a~~~-Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
+++...+.++.++++ +++|++-+=+|.. ++.++..++++.+.+.| ++.+.++.-
T Consensus 107 ~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G--~~~itvHgR 163 (318)
T TIGR00742 107 NADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKG--CQNFIVHAR 163 (318)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcC--CCEEEEeCC
Confidence 566677777777764 7788887777763 24467777888887775 666655543
No 385
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=72.67 E-value=77 Score=29.48 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC---hhhHHHHHHHHHHHhhc--CcEE--EEecC----CCC-HHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---KTNFNQILEYVKDIRDM--GMEV--CCTLG----MLE-KHQAIE 189 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge---~~~~~~l~~~i~~ik~~--g~~i--~~t~g----~l~-~e~l~~ 189 (386)
++..++...+..+...|++.+...+|+.+..+. +..+++-.++++.+++. .+.+ ...+. ..+ ++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 467888888888899999999876666554331 13455677777777754 2332 22221 212 234454
Q ss_pred HH---HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 190 LK---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 190 Lk---~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
|+ ++|++.+.- . .-.+.+...+-++.+++.|+.+ -++.|+
T Consensus 150 L~~K~~aGA~f~iT-Q-----------~~fd~~~~~~~~~~~~~~gi~~--PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYAIT-Q-----------LFFDNDDYYRFVDRCRAAGIDV--PIIPGI 192 (272)
T ss_pred HHHHHHcCCCeEee-c-----------cccCHHHHHHHHHHHHHcCCCC--CEeccc
Confidence 43 568874331 1 1124455556666778887653 455555
No 386
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=72.50 E-value=62 Score=27.79 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHH-HHHhhcCcEEEEecCCC--------CHHHHHHHHHh
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYV-KDIRDMGMEVCCTLGML--------EKHQAIELKKA 193 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i-~~ik~~g~~i~~t~g~l--------~~e~l~~Lk~a 193 (386)
+.+.+.+.++.+.+.|++.+.+.+ .+.+.+ +...+..+.+.+..|.. ..+.++..+++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 788899999999999998876643 222222 22222135544333322 34556666778
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc---CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEe
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA---GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~---Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (386)
|++.+.+..-.. .. +..+.+...+.++.+.+. ++.+....+.+.-.+.+++.+..+.+.+.+ ++.+.
T Consensus 78 Gad~i~v~~~~~----~~--~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g--~~~iK 147 (201)
T cd00945 78 GADEIDVVINIG----SL--KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG--ADFIK 147 (201)
T ss_pred CCCEEEEeccHH----HH--hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC--CCEEE
Confidence 999887643221 11 122356666766666654 777666555433225677777776666664 55554
No 387
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.48 E-value=61 Score=36.77 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=70.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE----EEEecCCC-------C----
Q 016605 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME----VCCTLGML-------E---- 183 (386)
Q Consensus 119 ~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~----i~~t~g~l-------~---- 183 (386)
|...+.+-|...++.+.+.|++-|-+.-. -.+.+.+...++.+|+.|.. +|.+...+ +
T Consensus 619 y~~ypd~vv~~f~~~~~~~GidifrifD~-------lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~ 691 (1143)
T TIGR01235 619 YTNYPDNVVKYFVKQAAQGGIDIFRVFDS-------LNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYY 691 (1143)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEECcc-------CcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHH
Confidence 44456666667778888999987766432 13568888888888887765 34442111 1
Q ss_pred HHHHHHHHHhccCeeecc----cCchHHH---HhhhCC---------CC-CHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 184 KHQAIELKKAGLTAYNHN----LDTSREF---YSKIIT---------TR-SYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~----le~~~~~---~~~i~~---------~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
.+.++.|.++|++.+.+. +=+..+. .+.++. .| +.--.+.+.-.+.++|..+--+.+-|+
T Consensus 692 ~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 692 TNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSM 768 (1143)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhh
Confidence 257888889999999862 2111122 222211 22 344455556667788987444444455
No 388
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=72.33 E-value=28 Score=33.39 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC---------------CCCCChhhHHHHHHHHHHHhh-c--CcEEEEecCCCC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR---------------DTIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~---------------~~~ge~~~~~~l~~~i~~ik~-~--g~~i~~t~g~l~ 183 (386)
.+.+++.+.++.+.+.|++.+.+.+... ...| +..+...++.++.+++ . .+++..+.|..+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG-~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG-APLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC-hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 4567888888888889998887654211 0011 2233455677777764 3 467878888888
Q ss_pred HHHHHHHHHhccCeeecc
Q 016605 184 KHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.++..+|++.|.++
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 888888888999988875
No 389
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=72.06 E-value=29 Score=31.15 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
+.++.+.+.|++.+.+..-...-...... +++++.+.+ ..+++...-|..+.+.++.+++.|++.+.++
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~----~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPN----FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 44455667899888764321110001112 444444443 4677888889999999999999999998874
No 390
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=72.04 E-value=97 Score=29.85 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++...+.|+..+.+.-.+.... .|..| +++.++++.+++. +..+....| -+...++.+++.|++.+++
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg-~~~~~~~~~~~~~~~~is~ 266 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGAL-SPADYREFVLPYMKRIVAELKREHPDVPVILFGK-GAGELLEAMAETGADVVGL 266 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC-CcHHHHHHHHhcCCCEEee
Confidence 3344445567887665432111112 23333 4456677777765 344433334 2345688899999998876
Q ss_pred c
Q 016605 201 N 201 (386)
Q Consensus 201 ~ 201 (386)
+
T Consensus 267 d 267 (346)
T PRK00115 267 D 267 (346)
T ss_pred C
Confidence 4
No 391
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=72.03 E-value=1.1e+02 Score=30.50 Aligned_cols=191 Identities=12% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEe----cCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCT----LGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t----~g~l~~e~l~~Lk~aG~ 195 (386)
..++++.++.++.+.+.|++.+.+. .|.......+.++.+++. +....++ .+. ....++.+.++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g--------~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~aGA 82 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAG--------TPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAKAGA 82 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeC--------CHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHHcCC
Confidence 3688999999999888998877542 133334556777777643 2221111 122 3458889999999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
+.+.+.-+.. .....+.++.+++.|+.+..++ +. .++..+ .+..+.+++ ++.+.+.+...
T Consensus 83 dgV~v~g~~~------------~~~~~~~i~~a~~~G~~~~~g~-~s-~~t~~e---~~~~a~~~G--aD~I~~~pg~~- 142 (430)
T PRK07028 83 DIVCILGLAD------------DSTIEDAVRAARKYGVRLMADL-IN-VPDPVK---RAVELEELG--VDYINVHVGID- 142 (430)
T ss_pred CEEEEecCCC------------hHHHHHHHHHHHHcCCEEEEEe-cC-CCCHHH---HHHHHHhcC--CCEEEEEeccc-
Confidence 9988532211 1113466778888888765432 11 233222 234445565 67775542211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
+... . +...+.+ ...+..++ .-+-+.+ ++..+.....+.+||+.+..|..+... .++.+..+.++
T Consensus 143 -~~~~---~-~~~~~~l---~~l~~~~~-iPI~a~G---GI~~~n~~~~l~aGAdgv~vGsaI~~~--~d~~~~~~~l~ 207 (430)
T PRK07028 143 -QQML---G-KDPLELL---KEVSEEVS-IPIAVAG---GLDAETAAKAVAAGADIVIVGGNIIKS--ADVTEAARKIR 207 (430)
T ss_pred -hhhc---C-CChHHHH---HHHHhhCC-CcEEEEC---CCCHHHHHHHHHcCCCEEEEChHHcCC--CCHHHHHHHHH
Confidence 1111 1 1222222 22222222 1121222 334454567889999999777643322 24444444333
No 392
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.92 E-value=83 Score=28.99 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
.+.+.+++.+....+.|++-+-+.++. . .....+.+..++..+++. +++++ ....+.+.++.-.++ |.+.|
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~-~---~~~~~ee~~r~v~~i~~~~~~piS--IDT~~~~v~e~aL~~~~G~~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDY-G---GLDGVSAMKWLLNLLATEPTVPLM--LDSTNWEVIEAGLKCCQGKCVV 96 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-C---CCCHHHHHHHHHHHHHHhcCCcEE--eeCCcHHHHHHHHhhCCCCcEE
Confidence 688999999999999999877776532 1 112223444444444432 45543 344567777766665 87765
Q ss_pred e-cccCchHHHHhhhCCCCCHH-HHHHHHHHHHHcCCeeeEeEE--eecCCCHHHHHHHHH
Q 016605 199 N-HNLDTSREFYSKIITTRSYD-ERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLH 255 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~-~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~ 255 (386)
+ ++.+. ++ +.-+.+..+.++|..+..-.+ -|...|.++..+.++
T Consensus 97 NsIs~~~-------------~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~ 144 (252)
T cd00740 97 NSINLED-------------GEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAE 144 (252)
T ss_pred EeCCCCC-------------CccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHH
Confidence 5 22111 11 112333557788866443322 244445554444433
No 393
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=71.90 E-value=86 Score=29.17 Aligned_cols=205 Identities=15% Similarity=0.199 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC---CCChhhHHHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT---IGRKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~---~ge~~~~~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+.+.+++.++.+++.|+. +...+.+.|- .+-...-+.-++.++++ ++.|+.+.++. .+.+.++.+.+. ++.+
T Consensus 39 ~~~~~~~~A~~lk~~g~~-~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~~ 114 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVH-MLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV--MDTRDVEEVADY-ADML 114 (266)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee--CChhhHHHHHHh-CCEE
Confidence 678999999999999986 4444433221 00000113333344444 47798876654 577888888887 8888
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.|+--.. .+ ...++.+.+.|.+|.. =-|..-+.+|+...++.+..-| +. .+.+ -.-|+
T Consensus 115 kIga~~~----------~n----~~LL~~~a~~gkPV~l--k~G~~~s~~e~~~A~e~i~~~G-n~-~i~L----~~rG~ 172 (266)
T PRK13398 115 QIGSRNM----------QN----FELLKEVGKTKKPILL--KRGMSATLEEWLYAAEYIMSEG-NE-NVVL----CERGI 172 (266)
T ss_pred EECcccc----------cC----HHHHHHHhcCCCcEEE--eCCCCCCHHHHHHHHHHHHhcC-CC-eEEE----EECCC
Confidence 8854332 11 1233444445554321 1233347889999999998776 33 2322 12243
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHhCCC-cceeec--CcccccChhHHHhhhhcCccccccCC-----ccc--cCCCCChh
Q 016605 279 P-LQDQKPVEIWEMIRMIATARIVMPK-AMVRLS--AGRVRFSMPEQALCFLAGANSIFTGE-----KLL--TTPNNDFD 347 (386)
Q Consensus 279 ~-l~~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g~-----~~~--t~~~~~~~ 347 (386)
+ +.+.+. ..--++.+...+..+.- ..+..+ .|+-.+.......+..+||+.++.+. +-. .....+++
T Consensus 173 ~t~~~Y~~--~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~ 250 (266)
T PRK13398 173 RTFETYTR--NTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFE 250 (266)
T ss_pred CCCCCCCH--HHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHH
Confidence 2 222221 12223445555544321 112112 12212224455677889999876542 111 01235777
Q ss_pred HHHHHHHH
Q 016605 348 ADQLMFKV 355 (386)
Q Consensus 348 ~~~~~i~~ 355 (386)
+...|+++
T Consensus 251 ~l~~l~~~ 258 (266)
T PRK13398 251 EMKELVDE 258 (266)
T ss_pred HHHHHHHH
Confidence 77777654
No 394
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=71.82 E-value=1.2e+02 Score=30.67 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCC---CCHHHHHHHHHhc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGM---LEKHQAIELKKAG 194 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~---l~~e~l~~Lk~aG 194 (386)
..+++++-.+.++++...|++.+-+.. |..++ ..++...-+.+. .|.. |++..-. .-+..++.|+.+.
T Consensus 74 a~~~~~qK~eiar~L~~~gvd~IEv~f---P~aSe-~~~~~~~~i~k~---~g~~~~I~~l~rc~~~di~~tvEAl~~aK 146 (560)
T KOG2367|consen 74 AFLTTEQKLEIARQLAKLGVDIIEVGF---PVASE-QDFEDCKTIAKT---LGYVPVICTLIRCHMDDIERTVEALKYAK 146 (560)
T ss_pred CcCCcHHHHHHHHHHHhcCcCEEEecC---cccCc-chHHHHHHHHHh---CCCCceEEEeeccchHHHHHHHHHhhccC
Confidence 348999999999999999998886642 22232 234333333332 3433 3322111 2233344444332
Q ss_pred cCeeecccCchHHHHhhhCCCCCHH----HHHHHHHHHHHcCC-eeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYD----ERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~----~~l~~i~~a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
=-+|.+-+-+. ++|.++.-+++-+ -.++.++.++.+|. .+...-=-+..-..+.+.+++..+...+ ..++
T Consensus 147 r~~Vh~~~aTS-d~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~aV~Kag--~~tv-- 221 (560)
T KOG2367|consen 147 RPRVHVFIATS-DIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILGAVIKAG--VTTV-- 221 (560)
T ss_pred cceEEEEeccc-HHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHHHHHHHhC--Cccc--
Confidence 22354444443 4555554455544 45567888888884 3433222212223466788888888776 2231
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc---ceeecC-cccccChhHHHhhhhcCcccc
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA---MVRLSA-GRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~---~i~i~~-g~~~~~~~~~~~~l~~Gan~~ 332 (386)
-+|.|- ...++.++.+++...+.-.|.. .|...+ .-.+..-.....++.+||..+
T Consensus 222 ----nipdTV----gia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 222 ----NIPDTV----GIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred ----cCccee----cccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 133442 2346788888888888766653 121111 001111223467889999987
No 395
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.76 E-value=56 Score=26.99 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC---cEEEEecCC------CCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVCCTLGM------LEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g---~~i~~t~g~------l~~e~l~~Lk~ 192 (386)
.+++++.+.+.+ .+.+-+.++.-. ......+.++++.+++.+ +.+.+- |. ...+..++|++
T Consensus 41 vp~e~i~~~a~~---~~~d~V~lS~~~------~~~~~~~~~~~~~L~~~~~~~~~i~vG-G~~~~~~~~~~~~~~~l~~ 110 (137)
T PRK02261 41 TSQEEFIDAAIE---TDADAILVSSLY------GHGEIDCRGLREKCIEAGLGDILLYVG-GNLVVGKHDFEEVEKKFKE 110 (137)
T ss_pred CCHHHHHHHHHH---cCCCEEEEcCcc------ccCHHHHHHHHHHHHhcCCCCCeEEEE-CCCCCCccChHHHHHHHHH
Confidence 678888876654 456666554311 123445566666666543 333222 22 24566788889
Q ss_pred hccCeeec
Q 016605 193 AGLTAYNH 200 (386)
Q Consensus 193 aG~~~v~i 200 (386)
.|++.+..
T Consensus 111 ~G~~~vf~ 118 (137)
T PRK02261 111 MGFDRVFP 118 (137)
T ss_pred cCCCEEEC
Confidence 99887764
No 396
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=71.67 E-value=37 Score=31.17 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cCeeecc
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYNHN 201 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~~v~i~ 201 (386)
..+..+.++.+.+.|+..+.+.+-...-...... +++++++++ .++++..+.|..+.+.+.++.+.| ++.+.++
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~----~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD----LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 3455666677778899988775432211111122 344555553 467888888999999999998887 8887653
Q ss_pred cCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 016605 202 LDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (386)
Q Consensus 202 le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v 235 (386)
- ..|. +..+++ +..+.+.+.|+++
T Consensus 230 ~----a~~~---~~~~~~---~~~~~~~~~gi~~ 253 (254)
T TIGR00735 230 S----VFHY---REITIG---EVKEYLAERGIPV 253 (254)
T ss_pred H----HHhC---CCCCHH---HHHHHHHHCCCcc
Confidence 1 1111 233555 4456666788764
No 397
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=71.65 E-value=82 Score=29.53 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----hhhHHHHHHHHHHHhhc-C--cEE--EEec-CC---CCHH-HH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRDM-G--MEV--CCTL-GM---LEKH-QA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-----~~~~~~l~~~i~~ik~~-g--~~i--~~t~-g~---l~~e-~l 187 (386)
+.+++.+.+..+...|++.+...+|+.+..+. +..++...++|+.+++. + +.+ ..++ |. -+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 45688888888889999999877776553321 13456678888888753 2 332 2332 21 2222 24
Q ss_pred HHHH---HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 188 IELK---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 188 ~~Lk---~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
+.|+ ++|++.+.- . .--+.+...+.++.+++.|+.+ -++.|+
T Consensus 152 ~~L~~Ki~aGA~f~iT-Q-----------~~Fd~~~~~~f~~~~~~~gi~~--PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFIIT-Q-----------LFYDVDNFLKFVNDCRAIGIDC--PIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEeec-c-----------ceecHHHHHHHHHHHHHcCCCC--CEEeec
Confidence 4443 478874431 1 0124455556667788888753 346665
No 398
>PLN02321 2-isopropylmalate synthase
Probab=71.63 E-value=63 Score=34.07 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHH----HHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~----~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG 194 (386)
++.+|+++.+.. +++.|...+.+.. ...+ ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+.=
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~---EDa~-rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSP---EDAG-RSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEec---ccCC-CCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHH
Confidence 677887776554 4456665555532 1122 34678899999988877765 45578888776665554321
Q ss_pred ---cC---eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 195 ---LT---AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 195 ---~~---~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
+. .+.+++ +...++.-.+...-.+.++|...--+.+.|+||
T Consensus 279 ~~~~~~~~~v~i~v----------H~HND~GlAvANslaAv~AGA~~Vd~TinGlGE 325 (632)
T PLN02321 279 KANTPGIENVIIST----------HCQNDLGLSTANTLAGAHAGARQVEVTINGIGE 325 (632)
T ss_pred HHhcCCCCCceEEE----------EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc
Confidence 11 122222 112233333444445667888755556677776
No 399
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=71.46 E-value=22 Score=30.64 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
+.+|+. ++.+.|.+.|-+-. ...+++.+.++.++.. .+.+.++ |-++.+.+..+.+.|+|.+++
T Consensus 89 ~~ee~~----ea~~~g~d~I~lD~---------~~~~~~~~~v~~l~~~~~~v~ie~S-GGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 89 NLEEAE----EALEAGADIIMLDN---------MSPEDLKEAVEELRELNPRVKIEAS-GGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp SHHHHH----HHHHTT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEE-SSSSTTTHHHHHHTT-SEEEE
T ss_pred CHHHHH----HHHHhCCCEEEecC---------cCHHHHHHHHHHHhhcCCcEEEEEE-CCCCHHHHHHHHhcCCCEEEc
Confidence 345554 44557887776532 1236666666666543 3455555 447899999999999999987
Q ss_pred c
Q 016605 201 N 201 (386)
Q Consensus 201 ~ 201 (386)
+
T Consensus 155 g 155 (169)
T PF01729_consen 155 G 155 (169)
T ss_dssp C
T ss_pred C
Confidence 5
No 400
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=71.45 E-value=45 Score=30.94 Aligned_cols=118 Identities=17% Similarity=0.098 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-----hhhHHHHHHHHHHHhhc---CcEE--E----EecCCC-CHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRDM---GMEV--C----CTLGML-EKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-----~~~~~~l~~~i~~ik~~---g~~i--~----~t~g~l-~~e~ 186 (386)
.+..++...+..+.+.|++.+.+.+|+.+..++ +..+.+-.++++.++.. ++.+ . .++... .+..
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~ 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHH
Confidence 456888888889999999999888776655442 23445566666666643 2221 1 111222 2333
Q ss_pred HHHHH---HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-C-CCHHHHHHH
Q 016605 187 AIELK---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G-EAEEDRVGL 253 (386)
Q Consensus 187 l~~Lk---~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g-et~ed~~~~ 253 (386)
++.|+ ++|++.+.-= .-.+.+...+-++.+++.|+. +-++.|+ . .+...+..+
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ------------~~fd~~~~~~~~~~~~~~gi~--vPIi~GI~p~~s~~~l~~~ 207 (274)
T cd00537 150 IKRLKRKVDAGADFIITQ------------LFFDNDAFLRFVDRCRAAGIT--VPIIPGIMPLTSYKQAKRF 207 (274)
T ss_pred HHHHHHHHHCCCCEEeec------------ccccHHHHHHHHHHHHHcCCC--CCEEeeccccCCHHHHHHH
Confidence 44443 4576554320 012445556666777888863 3344444 2 344444333
No 401
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=71.32 E-value=97 Score=30.20 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhccCe--ee
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA--YN 199 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG~~~--v~ 199 (386)
+.+.+.++.+++.|. .+.+.... .+ ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+.=.+. +.
T Consensus 112 ~~~~~~i~~ak~~G~-~v~~~~ed---a~-r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~ 186 (363)
T TIGR02090 112 EKAVEAVEYAKEHGL-IVEFSAED---AT-RTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP 186 (363)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEee---cC-CCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCce
Confidence 444455566677776 34443211 11 23567888888888777654 45567888887777665442222 22
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
+++ +...++.-.+...-.+.++|...--+.+.|+|+
T Consensus 187 l~~----------H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 187 ISV----------HCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred EEE----------EecCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 222 111222222333334456788755556777765
No 402
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=71.26 E-value=24 Score=32.11 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++..+.++.+.+.|++.+++.++.. +.+..+ +.+++++ .++++..+.|..+.+.+.++.+.|+|.|.++
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~---g~~ad~----~~I~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP---GNHADL----KKIRDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC---CCCCcH----HHHHHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4556666666777777665543211 111122 4444444 4577777777788888888888888888875
No 403
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=71.26 E-value=98 Score=29.60 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC----------CCC------C----------hhhHHHHHHHHHHHhhcCcEEE
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD----------TIG------R----------KTNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~----------~~g------e----------~~~~~~l~~~i~~ik~~g~~i~ 176 (386)
+.|...+.++.+++.|++-|-+|+-..+ ++. . ...+++..++.+.+++.|+.+.
T Consensus 28 ~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~ 107 (347)
T COG2089 28 DLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFF 107 (347)
T ss_pred cHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEE
Confidence 6778888888899999988888761110 000 0 0123555566666666777765
Q ss_pred EecCCCCHHHHHHHHHhccCeeec-ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHH
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNH-NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLL 254 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i-~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l 254 (386)
.++ .+...++.|...++..+-| |.|.. + +.-|+.+.+.|-+ +|+-. .-+.+|+.+.+
T Consensus 108 SSP--fd~~svd~l~~~~~~ayKIaS~E~~------------~---~plik~iA~~~kP----iIlSTGma~~~ei~~av 166 (347)
T COG2089 108 SSP--FDLTAVDLLESLNPPAYKIASGEIN------------D---LPLIKYIAKKGKP----IILSTGMATIEEIEEAV 166 (347)
T ss_pred ecC--CCHHHHHHHHhcCCCeEEecCcccc------------C---hHHHHHHHhcCCC----EEEEcccccHHHHHHHH
Confidence 554 5788888888888877766 22221 1 3445666667765 22222 23688999999
Q ss_pred HHHhcCCCCCCeEeee
Q 016605 255 HTLATLPTHPESVPIN 270 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~ 270 (386)
..+++.+ +++.+-++
T Consensus 167 ~~~r~~g-~~~i~LLh 181 (347)
T COG2089 167 AILRENG-NPDIALLH 181 (347)
T ss_pred HHHHhcC-CCCeEEEE
Confidence 9999998 34343333
No 404
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.18 E-value=23 Score=34.36 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC--ChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g--e~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
++.+|.++.++.+.+.|++.+.+.++...... .+.....+.+.++.....++++..+.+..+.+.++++.+.|+|.|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~ 311 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVA 311 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHH
Confidence 45677777777777777777766554321100 0111112222222221124556666666677777777666777776
Q ss_pred cccCch--HHHHhhhC
Q 016605 200 HNLDTS--REFYSKII 213 (386)
Q Consensus 200 i~le~~--~~~~~~i~ 213 (386)
++=-.. ++...++.
T Consensus 312 ~gR~liadPdl~~k~~ 327 (353)
T cd04735 312 IGRGLLVDPDWVEKIK 327 (353)
T ss_pred HhHHHHhCccHHHHHH
Confidence 643332 34444443
No 405
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.81 E-value=45 Score=29.53 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=59.1
Q ss_pred HHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhh-CCCCCHHHHHHHHHHHHHcCCeeeEe
Q 016605 161 ILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKI-ITTRSYDERLETLKHVREAGINVCSG 238 (386)
Q Consensus 161 l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i-~~~~s~~~~l~~i~~a~~~Gi~v~~~ 238 (386)
+.+.|+.+.+. +..+....-..+.+.+..+...|=..+..++.+- ++-+.. +++.+.++++++++.+.++|.+|+..
T Consensus 12 l~~~I~ff~~~~~~~lef~TK~~nv~~Ll~l~~~~~t~~rfSlnp~-~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~ 90 (199)
T TIGR00620 12 LKRAIEHFGQSDFGKLRFVTKFHHVDHLLDAKHNGKTRFRFSINAD-YVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFI 90 (199)
T ss_pred HHHHHHHHccCCCcEEEEEEcccchhhHhcCCCCCCEEEEEEeCHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 44444444422 2333232333445556666555655566666553 333333 34568999999999999999987766
Q ss_pred E--EeecCCCHHHHHHHHHHHh-cCC
Q 016605 239 G--IIGLGEAEEDRVGLLHTLA-TLP 261 (386)
Q Consensus 239 ~--i~Glget~ed~~~~l~~l~-~l~ 261 (386)
+ |+-.....++-.++++.+. .+.
T Consensus 91 ~~PIi~~egW~e~Y~~l~~~l~~~l~ 116 (199)
T TIGR00620 91 IAPIYIHEGWKEGYRNLLEKLDEALP 116 (199)
T ss_pred eeceEeeCChHHHHHHHHHHHHHhCC
Confidence 5 3323445566778887774 553
No 406
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=70.78 E-value=84 Score=30.82 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=60.1
Q ss_pred CCHHHHHH----HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQ----AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~----~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG 194 (386)
++.+++++ .++.+++.|. .+.+.. . ..+ ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+.=
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~-~v~~~~--e-d~~-r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGL-YVSFSA--E-DAS-RTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEEe--c-cCC-CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHH
Confidence 45666665 4455666776 354432 1 111 24568888888888877654 45678888877776654431
Q ss_pred cCe--eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 195 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 195 ~~~--v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
... +.+++ +...++.-.+...-.+.++|...--+.+.|+||
T Consensus 184 ~~~~~~~l~~----------H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe 226 (378)
T PRK11858 184 VEAVDIPIEV----------HCHNDFGMATANALAGIEAGAKQVHTTVNGLGE 226 (378)
T ss_pred HHhcCCeEEE----------EecCCcCHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 111 22222 111233323333334456888755556777876
No 407
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=70.76 E-value=62 Score=33.05 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
++++ .+.++.+.+.|++-+.+... .|.. ...++.++.+|+. ++.+.. -...+.+.++.+.++|+|.|.+
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a----~G~s---~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSS----QGNS---IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRI 309 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecC----CCCc---hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 3444 77888889999988887542 1221 2346788888865 344433 2347899999999999999977
Q ss_pred ccCch--HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 201 NLDTS--REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 201 ~le~~--~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
++-.. -.+.....-+ ..+..+.+..+.+++.|+++-++- |. .+..|+.+-+.
T Consensus 310 g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG--Gi-~~~~di~kAla 364 (495)
T PTZ00314 310 GMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADG--GI-KNSGDICKALA 364 (495)
T ss_pred CCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC--CC-CCHHHHHHHHH
Confidence 65322 1111011111 134555666677777886533210 21 35666666554
No 408
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.61 E-value=95 Score=29.17 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.+.+...++.+.+.+.. +.++... .. ..-..++.+..+++... +..++++++... .+.+.+++-.++|+++|-
T Consensus 26 ~n~e~~~avi~AAe~~~sP-vIl~~~~-~~-~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM 102 (283)
T PRK07998 26 TNLETTISILNAIERSGLP-NFIQIAP-TN-AQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVM 102 (283)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEECcH-hH-HhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEE
Confidence 3566777777777777654 4454321 00 11123466777777654 567777666543 367778888899999888
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eEeEEeecCCC-------HHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA-------EEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v--~~~~i~Glget-------~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.--..+ + ..+.+...+..+.++..|+.| ..+.+-|..+. .-+..+..+|+++.| +|.+-+.
T Consensus 103 ~DgS~l~--~-----eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tg--vD~LAva 173 (283)
T PRK07998 103 IDGAALP--F-----EENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTG--CDMLAVS 173 (283)
T ss_pred EeCCCCC--H-----HHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhC--cCeeehh
Confidence 7322211 0 012344557788899999876 44555444110 124556678888886 5544443
Q ss_pred eeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 271 ALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 271 ~f~P~~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
. ||--+.. +.++.+.+.++.+ .. +..+-+.+| -+...+.-..++..|++.+
T Consensus 174 i-----Gt~HG~Y~~p~l~~~~l~~I~~----~~-~vPLVlHGg-SG~~~e~~~~ai~~Gi~Ki 226 (283)
T PRK07998 174 I-----GNVHGLEDIPRIDIPLLKRIAE----VS-PVPLVIHGG-SGIPPEILRSFVNYKVAKV 226 (283)
T ss_pred c-----cccccCCCCCCcCHHHHHHHHh----hC-CCCEEEeCC-CCCCHHHHHHHHHcCCcEE
Confidence 2 3322111 3344443332222 22 211222222 2334444467888998887
No 409
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=70.60 E-value=30 Score=31.09 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEe--cCCCCHHHHHHHHHhccCeeec
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCT--LGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t--~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
+++.+.++.+.+.|++.|.+.. + -++.+ +++. ++++... ....+.+.++.|++.|++++.+
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~--------~----g~~~~---~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~l 66 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN--------P----GLLEL---LKELGPDLKIIADYSLNVFNSESARFLKELGASRITL 66 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC--------H----HHHHH---HHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEE
Confidence 5778888888999999886642 1 23333 4443 3454443 4457899999999999999999
Q ss_pred ccCch
Q 016605 201 NLDTS 205 (386)
Q Consensus 201 ~le~~ 205 (386)
+.|-.
T Consensus 67 s~EL~ 71 (233)
T PF01136_consen 67 SPELS 71 (233)
T ss_pred CccCC
Confidence 87653
No 410
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=70.54 E-value=34 Score=31.68 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 156 TNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 156 ~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
...+.+.+.++.+|+. +.++++-.|..+++.++.+. .|.|.+-+|=
T Consensus 181 ~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 181 ELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp SCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred cchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 3456788999999865 67888999999999999999 8999998863
No 411
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=70.47 E-value=1.1e+02 Score=29.66 Aligned_cols=171 Identities=13% Similarity=0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCC--------CCHHHHHHHHHhc--cCeeecccCchHHHHhhhCCCCCHHHHHHHHHH
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIELKKAG--LTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~--------l~~e~l~~Lk~aG--~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~ 227 (386)
.+.+++.++..+ .++++.++.+- ..++..+.+++++ +|.+.+++-.. .. +..+.....+...+.++.
T Consensus 124 ~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP-~~-~g~~~~~~~~~~~eiv~a 200 (344)
T PRK05286 124 ADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSP-NT-PGLRDLQYGEALDELLAA 200 (344)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCC-CC-CCcccccCHHHHHHHHHH
Confidence 355555555544 45554444321 3356677777666 88888777332 11 011113344445555555
Q ss_pred HHHc-C-----CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC-CC---CCC-CCCCCCH----HHHH
Q 016605 228 VREA-G-----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK-GT---PLQ-DQKPVEI----WEMI 292 (386)
Q Consensus 228 a~~~-G-----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~-gT---~l~-~~~~~s~----~e~~ 292 (386)
+++. + +++.+-+- .+.+.+++.++++.+.+.| ++.+.+..=++.. +. +.. .....+. ...+
T Consensus 201 Vr~~~~~~~~~~PV~vKls--p~~~~~~~~~ia~~l~~~G--adgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l 276 (344)
T PRK05286 201 LKEAQAELHGYVPLLVKIA--PDLSDEELDDIADLALEHG--IDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERST 276 (344)
T ss_pred HHHHHhccccCCceEEEeC--CCCCHHHHHHHHHHHHHhC--CcEEEEeCCccccccccccccCCCCCCcccHHHHHHHH
Confidence 5543 3 55444333 3456778999999998886 6776665422111 10 000 0111111 1233
Q ss_pred HHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 293 RMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 293 ~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
+.+...+..++..+.-+..|-+. ..+.....+.+||+.+..+.
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~-s~eda~e~l~aGAd~V~v~~ 319 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGID-SAEDAYEKIRAGASLVQIYS 319 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCC-CHHHHHHHHHcCCCHHHHHH
Confidence 44555554443222122222222 22333556679999986664
No 412
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.43 E-value=26 Score=31.80 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++.++.+.+.|+..+++.+-...-......++ .++++. ...+++...-|..+.+.+..++++|++.+.++
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~----~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTE----PVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHH----HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 44445556789998887543211001112333 344444 23678888888888999999999999998874
No 413
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=70.28 E-value=95 Score=29.05 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--------C-------CCCHHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--------G-------MLEKHQA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--------g-------~l~~e~l 187 (386)
+.+.|.+ +.+.|++.|-+-++.. + -..+.....++++.++..|+.+.... + .-+++.+
T Consensus 81 ~~~~i~~----ai~~GftSVMiD~S~l-~--~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a 153 (276)
T cd00947 81 SFELIKR----AIRAGFSSVMIDGSHL-P--FEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEA 153 (276)
T ss_pred CHHHHHH----HHHhCCCEEEeCCCCC-C--HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHH
Confidence 5566654 3567999987755432 1 12456667777777777666532211 1 2246666
Q ss_pred HHHH-HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEeec-CCCHHHHHHH
Q 016605 188 IELK-KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGL 253 (386)
Q Consensus 188 ~~Lk-~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-get~ed~~~~ 253 (386)
+.+. +-|+|.+.+++-+.--.|+.-.+.-+++ .++.+++. ++++ ++-|- |-..+++.+.
T Consensus 154 ~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~----~L~~i~~~~~vPL---VlHGgSG~~~e~~~~a 215 (276)
T cd00947 154 EEFVEETGVDALAVAIGTSHGAYKGGEPKLDFD----RLKEIAERVNVPL---VLHGGSGIPDEQIRKA 215 (276)
T ss_pred HHHHHHHCCCEEEeccCccccccCCCCCccCHH----HHHHHHHHhCCCE---EEeCCCCCCHHHHHHH
Confidence 6665 4699999988766533333211223554 33333332 5554 33343 5555665544
No 414
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=70.27 E-value=21 Score=33.08 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCC-------HHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE-------KHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~-------~e~l~~Lk~aG 194 (386)
.++++.+ ..+.+.|+++|+++.- +...| ..++.+.+.++..+...-.+.+..-++. .+.++.+.++=
T Consensus 58 ~~~~eaL---~~L~~~G~~~V~VQpl-hiipG--~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL 131 (262)
T PF06180_consen 58 DSPEEAL---AKLADEGYTEVVVQPL-HIIPG--EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEAL 131 (262)
T ss_dssp --HHHHH---HHHHHCT--EEEEEE---SCSS--HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHCCCCEEEEeec-ceeCc--HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHH
Confidence 3455544 5666799999998864 33334 3567777777665533234444433433 66666665542
Q ss_pred cCeeec-ccCchHHHHhhhCCCCCHHHHHHHHHH-HHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 195 LTAYNH-NLDTSREFYSKIITTRSYDERLETLKH-VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 195 ~~~v~i-~le~~~~~~~~i~~~~s~~~~l~~i~~-a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
.+.+.- .-+. .-++-.....+........++. +.+.|.. ++.+|.-|..-++.+.+..++.-+ +..+.+.+|
T Consensus 132 ~~~~~~~~~~~-a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~---~v~vgtvEG~P~~~~vi~~L~~~g--~k~V~L~Pl 205 (262)
T PF06180_consen 132 AEEFPKKRKDE-AVVLMGHGTPHPANAAYSALQAMLKKHGYP---NVFVGTVEGYPSLEDVIARLKKKG--IKKVHLIPL 205 (262)
T ss_dssp HCCS-TT-TTE-EEEEEE---SCHHHHHHHHHHHHHHCCT-T---TEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEE
T ss_pred HHhccccCCCC-EEEEEeCCCCCCccHHHHHHHHHHHhCCCC---eEEEEEeCCCCCHHHHHHHHHhcC--CCeEEEEec
Confidence 121110 0000 0000011112222333444444 4444532 233344222224666667777665 788999999
Q ss_pred eecCCC
Q 016605 273 LAVKGT 278 (386)
Q Consensus 273 ~P~~gT 278 (386)
+-..|.
T Consensus 206 MlVAGd 211 (262)
T PF06180_consen 206 MLVAGD 211 (262)
T ss_dssp SSS--H
T ss_pred ccccch
Confidence 987754
No 415
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=70.25 E-value=1e+02 Score=29.46 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCCC--------CHHHHHHHHHhc--cCeeecccCchHHHHhhhCCCCCHHHHHHHHHH
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGML--------EKHQAIELKKAG--LTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~l--------~~e~l~~Lk~aG--~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~ 227 (386)
.+.+++.++..+..+..+.++.+-. .++..+.+++++ +|.+.+++-. +.. ...+...+.+...+.++.
T Consensus 114 ~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~sc-P~~-~g~~~~~~~~~~~~iv~a 191 (327)
T cd04738 114 ADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSS-PNT-PGLRDLQGKEALRELLTA 191 (327)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCC-CCC-CccccccCHHHHHHHHHH
Confidence 3455555554433344544443222 255666666655 7887777622 211 011113345555555555
Q ss_pred HHHc-C-----CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee-cCCC---CC----CCCCC-CCHHHHH
Q 016605 228 VREA-G-----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA-VKGT---PL----QDQKP-VEIWEMI 292 (386)
Q Consensus 228 a~~~-G-----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P-~~gT---~l----~~~~~-~s~~e~~ 292 (386)
+++. + +++.+-+- .+.+.+++.++++.+.+.| ++.+.++.=++ .... .. ..... ......+
T Consensus 192 v~~~~~~~~~~~Pv~vKl~--~~~~~~~~~~ia~~l~~aG--ad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l 267 (327)
T cd04738 192 VKEERNKLGKKVPLLVKIA--PDLSDEELEDIADVALEHG--VDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERST 267 (327)
T ss_pred HHHHHhhcccCCCeEEEeC--CCCCHHHHHHHHHHHHHcC--CcEEEEECCcccccccccccccCCCCccCChhhhHHHH
Confidence 5543 2 45444443 3456778899999888886 67776543211 1000 01 01111 1111234
Q ss_pred HHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 293 RMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 293 ~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
+.+...+...+..+.-+..|-+. ..+.....+.+||+.++.+..
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~-t~~da~e~l~aGAd~V~vg~~ 311 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGIS-SGEDAYEKIRAGASLVQLYTG 311 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCC-CHHHHHHHHHcCCCHHhccHH
Confidence 55555555554221122222222 233345666799999977753
No 416
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.23 E-value=31 Score=32.82 Aligned_cols=104 Identities=22% Similarity=0.329 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 016605 217 SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 217 s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a 296 (386)
..++..+..+.+++.|-.+..-+-+ |+..+|+.+-++...++. ++ .|+ ..|-||... .-....+.+.++
T Consensus 204 PLeEmk~VaEtArk~GkGveaI~hv--gDGyDdli~G~kA~ve~~--vD-----vfv-vEGgPFNrA-~dRL~AFa~Ava 272 (505)
T COG4018 204 PLEEMKRVAETARKSGKGVEAILHV--GDGYDDLIDGLKAAVEEV--VD-----VFV-VEGGPFNRA-EDRLSAFARAVA 272 (505)
T ss_pred CHHHHHHHHHHHHHhCCCceeEEEe--cCCcHHHHHHHHHHHHhc--Cc-----EEE-EcCCCcchh-hHHHHHHHHHHH
Confidence 6788888899999999877765554 566789999998888774 22 233 456676432 223455667778
Q ss_pred HHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 297 TARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 297 ~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
..|++.|...+--.+. + .+....+|.+|-|.+++|
T Consensus 273 a~Ril~pGkvVaTNGA---Y-EDEcrvGLRaGLN~iltG 307 (505)
T COG4018 273 ACRILAPGKVVATNGA---Y-EDECRVGLRAGLNGILTG 307 (505)
T ss_pred hheeccCCcEEeecCc---c-hhhHHHhHHhchhhhhcC
Confidence 8898888754422211 1 345678999999998655
No 417
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=70.15 E-value=37 Score=32.48 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCC--CCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHH-hccCeeec
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK-AGLTAYNH 200 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~--~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~-aG~~~v~i 200 (386)
++..+.++.+.+.|+..+.+.+..... .| +.. ++.++++++ .++++..+.|..+.+.++.+.+ .|+|.|.+
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~----~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAE----YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCC-CcC----hHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 356667777777888888776532111 12 112 356666664 4778877878888888888876 68999888
Q ss_pred cc
Q 016605 201 NL 202 (386)
Q Consensus 201 ~l 202 (386)
+=
T Consensus 224 GR 225 (321)
T PRK10415 224 GR 225 (321)
T ss_pred Ch
Confidence 63
No 418
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=69.97 E-value=99 Score=29.11 Aligned_cols=188 Identities=10% Similarity=0.084 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.|.+...++.+.+.+.. +.++.+. ... .-..++.+..+++.+. +..++++++... .+.+.+++-.++|+++|-
T Consensus 26 ~n~e~~~avi~AAee~~sP-vIlq~s~-~~~-~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSP-VILAGTP-GTF-KHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CCHHHHHHHHHHHHHHCCC-EEEEcCc-chh-hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEe
Confidence 4567777777777777764 5454321 110 1123566777777654 567887777554 478888888899998887
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE--eEEeecCCC---------HHHHHHHHHHHhcCCCCCCeEe
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGLGEA---------EEDRVGLLHTLATLPTHPESVP 268 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~--~~i~Glget---------~ed~~~~l~~l~~l~~~~~~v~ 268 (386)
++--.++ | ..+.+...+..+.++..|+.|.. +-+-|-.+. .-+..+..+|+++.| +|.+-
T Consensus 103 ~DgS~lp--~-----eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~Tg--vD~LA 173 (286)
T PRK12738 103 IDGSHFP--F-----AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTG--VDSLA 173 (286)
T ss_pred ecCCCCC--H-----HHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhC--CCEEE
Confidence 7533321 0 11344455788889999987654 445443111 114566677888776 55544
Q ss_pred eeeeeecCCCCCC---CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 269 INALLAVKGTPLQ---DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 269 ~~~f~P~~gT~l~---~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+.. ||--+ ..|.++.+.+.++.+ .. +..+-+-+ --++..+.-..+...|++-+
T Consensus 174 vai-----Gt~HG~Y~~~p~Ldfd~l~~I~~----~~-~vPLVLHG-gSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 174 VAI-----GTAHGLYSKTPKIDFQRLAEIRE----VV-DVPLVLHG-ASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred ecc-----CcccCCCCCCCcCCHHHHHHHHH----Hh-CCCEEEeC-CCCCCHHHHHHHHHcCCeEE
Confidence 432 44322 223444444333322 22 11111112 12333444466788898877
No 419
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=69.90 E-value=53 Score=30.50 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~ 192 (386)
..+++.+.++.+++.|.. +.+..- ...+ ...+++.++++.+.+.|.. +.-|.|.++++.+..+.+
T Consensus 107 ~~~~~~~~i~~ak~~G~~-v~~~~~--~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~ 174 (266)
T cd07944 107 EFDEALPLIKAIKEKGYE-VFFNLM--AISG--YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIIS 174 (266)
T ss_pred cHHHHHHHHHHHHHCCCe-EEEEEE--eecC--CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 566777777777777753 322210 0011 2346677777776666544 344567777666655543
No 420
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=69.86 E-value=29 Score=32.63 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=43.5
Q ss_pred CcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe
Q 016605 100 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT 178 (386)
Q Consensus 100 ~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t 178 (386)
|.+|.|+.... ....++.+|..+.++.+++. .-..+.+......... ...+++.++-.+..++.|..+..-
T Consensus 117 pk~cg~~~~~~-------~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 117 LKKNSLFGNDV-------AQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred CccccccCCCC-------cccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 67787775321 12246788888888877654 1123444432111111 112445555555555667764333
Q ss_pred c-CCCCHHHHHHHHH
Q 016605 179 L-GMLEKHQAIELKK 192 (386)
Q Consensus 179 ~-g~l~~e~l~~Lk~ 192 (386)
. +..+.+.++++.+
T Consensus 189 ~~~~~~~~ei~~~~~ 203 (285)
T TIGR02320 189 HSRKKDPDEILEFAR 203 (285)
T ss_pred cCCCCCHHHHHHHHH
Confidence 3 3456666666654
No 421
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=69.83 E-value=36 Score=34.27 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh------hhHHHHHHHHHHHh-hcCcEEEEec-----CCC------C
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK------TNFNQILEYVKDIR-DMGMEVCCTL-----GML------E 183 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~------~~~~~l~~~i~~ik-~~g~~i~~t~-----g~l------~ 183 (386)
++.+.|...++.+++.|++.+.-.-| .++.|.+ ..|++..++++.++ ++|=..++.. |.. .
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILALRG-DpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~ 167 (590)
T KOG0564|consen 89 MPKEMIDKALEQAKALGIRNILALRG-DPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDY 167 (590)
T ss_pred ccHHHHHHHHHHHHHhCchhhhhhcC-CCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccch
Confidence 67889999999999999988754433 3333422 24788999999998 5554433321 111 1
Q ss_pred HHHHHHH---HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHH
Q 016605 184 KHQAIEL---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTL 257 (386)
Q Consensus 184 ~e~l~~L---k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l 257 (386)
...+..| .++|.|.|--- + =.+.+..++-.+.++++|+ ++-++.|+ -++...+..+..+.
T Consensus 168 ~~Dl~yLk~KvdaGaDFIiTQ----------l--FYd~e~flkfv~~cR~~gi--~~PIvPGIMPI~~Y~sf~R~~kls 232 (590)
T KOG0564|consen 168 LADLPYLKEKVDAGADFIITQ----------L--FYDVETFLKFVKDCRAAGI--NVPIVPGIMPIQSYRSFLRIAKLS 232 (590)
T ss_pred hhhhHHHHHhhcccchhhhhh----------h--hcCHHHHHHHHHHHHHhCC--CCCcccccccchhHHHHHHHHHHh
Confidence 2233333 34566644311 0 0245666677777888887 44455555 45555555555444
No 422
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=69.78 E-value=54 Score=30.73 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-----hhHHHHHHHHHHHhh-cC--cE--EEEe----cCCCC-HHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRD-MG--ME--VCCT----LGMLE-KHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-----~~~~~l~~~i~~ik~-~g--~~--i~~t----~g~l~-~e~ 186 (386)
.+.+++...+..+...|++.|...+|+.+..|+. ..+....++++.+++ .+ +. +... +..-+ +..
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~ 161 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAE 161 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHH
Confidence 3567888888888999999998888776655431 123346677777762 22 22 2222 11222 223
Q ss_pred HHHH---HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCC--eeeEeEEe
Q 016605 187 AIEL---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGI--NVCSGGII 241 (386)
Q Consensus 187 l~~L---k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi--~v~~~~i~ 241 (386)
+++| .++|++.+--- .-.+.+...+.++.+++.|+ ++-.+++.
T Consensus 162 ~~~l~~Ki~aGA~f~iTQ------------~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p 209 (287)
T PF02219_consen 162 LKRLKKKIDAGADFIITQ------------PFFDAEAFERFLDRLREAGIDVPIIPGIMP 209 (287)
T ss_dssp HHHHHHHHHTTESEEEEE------------E-SSHHHHHHHHHHHHHTTHTSEEEEEEE-
T ss_pred HHHHHHHHHCCCCEEecc------------ccCCHHHHHHHHHHHHHcCCCCcEEEEEec
Confidence 3333 34677654320 11345555566677777776 55555553
No 423
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.73 E-value=96 Score=32.50 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcE--EEEe--cCCCCHHHHHHHHHhccCe
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~--i~~t--~g~l~~e~l~~Lk~aG~~~ 197 (386)
+++.+.+.++++.+.|++.++|. ++.|- ..-..+.++++.+++ .+++ ++++ .|.-....+..+ ++|++.
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~-l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAi-eAGa~~ 226 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIK----DMAGL-LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAI-EAGIDG 226 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----CCCCC-cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHH-HcCCCE
Confidence 68888899999999999998883 22221 233567777777764 3333 3443 454445545444 789999
Q ss_pred eecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 016605 198 YNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (386)
Q Consensus 198 v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v 235 (386)
|...+.++ .. ...-+.+.++.++ +..|+.+
T Consensus 227 vD~ai~glG~~-----~Gn~~le~vv~~L---~~~~~~~ 257 (593)
T PRK14040 227 VDTAISSMSMT-----YGHSATETLVATL---EGTERDT 257 (593)
T ss_pred EEecccccccc-----ccchhHHHHHHHH---HhcCCCc
Confidence 99888876 31 1122556555555 3445543
No 424
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=69.62 E-value=80 Score=27.88 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe----cCCC-CHHH---HHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML-EKHQ---AIELKK 192 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~l-~~e~---l~~Lk~ 192 (386)
..+.+++.+.++++.+.++..+++. |...+...+. ++..++.+.+. .|.. ++.. ++...+
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~---------p~~v~~~~~~---l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~ 80 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVN---------PCFVPLAREA---LKGSGVKVCTVIGFPLGATTTEVKVAEAREAIA 80 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc---------HHHHHHHHHH---cCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHH
Confidence 3689999999999999889888763 2233333332 23334443332 2322 2222 344455
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.|+|.+.+-+.-. .+ ..+.++...+-+..+.+. |+.+.+ |+.. ..+.+++....+...++| .+.+..
T Consensus 81 ~GAdevdvv~~~g-----~~-~~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~G--aD~IKT 150 (203)
T cd00959 81 DGADEIDMVINIG-----AL-KSGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAG--ADFIKT 150 (203)
T ss_pred cCCCEEEEeecHH-----HH-hCCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEc
Confidence 6999887755432 11 134555556656655554 565555 5555 346788888999999997 776665
Q ss_pred e-eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 270 N-ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 270 ~-~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
. -|.| ...+.++...+....+ ...-+.+++|-- ..+.....+.+||+.+
T Consensus 151 sTG~~~---------~~at~~~v~~~~~~~~---~~v~ik~aGGik--t~~~~l~~~~~g~~ri 200 (203)
T cd00959 151 STGFGP---------GGATVEDVKLMKEAVG---GRVGVKAAGGIR--TLEDALAMIEAGATRI 200 (203)
T ss_pred CCCCCC---------CCCCHHHHHHHHHHhC---CCceEEEeCCCC--CHHHHHHHHHhChhhc
Confidence 3 1221 2234554333333333 233455555432 2233355666788776
No 425
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=69.58 E-value=44 Score=30.22 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.+++......+.+ +|.+-|++-.|+. .|++... .+.+.++..-. ++++.+--|..+.+.++.+.++|+|.+.+
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~--~g~~v~~-e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSG--APEPVPP-ELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCC--CCCCcCH-HHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 577888887777766 6888888853321 2333222 33333332211 46777888999999999999999999987
Q ss_pred c
Q 016605 201 N 201 (386)
Q Consensus 201 ~ 201 (386)
+
T Consensus 208 G 208 (223)
T TIGR01768 208 G 208 (223)
T ss_pred C
Confidence 5
No 426
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=69.24 E-value=43 Score=30.17 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-c-CcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
..++|++...+..+...|..-|.+-+.+ .+.. .++++.+++ . ++++.+--|..+.+.++.+.++|+|.+
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe~SG-----~~~~----~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~V 201 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLEYSG-----AYGP----PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTI 201 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeCCCC-----CcCC----HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 3789999999999999997666665322 1111 334444443 3 577778889999999999999999999
Q ss_pred ecc
Q 016605 199 NHN 201 (386)
Q Consensus 199 ~i~ 201 (386)
.++
T Consensus 202 VVG 204 (219)
T cd02812 202 VVG 204 (219)
T ss_pred EEC
Confidence 875
No 427
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=69.24 E-value=77 Score=29.26 Aligned_cols=112 Identities=24% Similarity=0.298 Sum_probs=63.1
Q ss_pred HHHHcCCcEEEEecc------cCCCCCChhhHHHHHHHHHHHhh-cCcE-EEEecC---CCC-HH-----HHHHHHHhcc
Q 016605 133 KAKEAGSTRFCMGAA------WRDTIGRKTNFNQILEYVKDIRD-MGME-VCCTLG---MLE-KH-----QAIELKKAGL 195 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g------~~~~~ge~~~~~~l~~~i~~ik~-~g~~-i~~t~g---~l~-~e-----~l~~Lk~aG~ 195 (386)
.+.+.|++-+..+.+ +.+.. .+..+++++..++.+.+ .... +....+ ..+ .+ ..+.++++|+
T Consensus 27 l~e~aG~d~i~vGds~~~~~lG~pDt-~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa 105 (254)
T cd06557 27 LADEAGVDVILVGDSLGMVVLGYDST-LPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGA 105 (254)
T ss_pred HHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCC
Confidence 334568877753211 12222 24667888888888764 3444 333322 222 22 3455566999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--------Ee-e---cCCCHHHHHHHHHHHhcC
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--------II-G---LGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--------i~-G---lget~ed~~~~l~~l~~l 260 (386)
+.|.+ |.. ++..+.|+.+.++|+++..++ .. | .|-|.+...+.++.++.+
T Consensus 106 ~aVki--Ed~-------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~ 167 (254)
T cd06557 106 DAVKL--EGG-------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALAL 167 (254)
T ss_pred eEEEE--cCc-------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHH
Confidence 88876 111 366788889999998765221 11 1 245666566666666555
No 428
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=69.01 E-value=97 Score=31.73 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=66.4
Q ss_pred CCHHHHHHHHH----HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHh-
Q 016605 122 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 122 ~s~eeI~~~~~----~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~a- 193 (386)
++.+++++.+. .+++.|...+.+.. .+ .+ ....++++++++.+.+.|.. ++-|.|..+++.+..+.+.
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--ED-a~-Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGC--ED-GG-RSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEecc--cc-cc-ccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 56777766554 45567765444432 11 12 24567889999888877655 4567898887776655432
Q ss_pred --cc---CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCC--HHHHHHHHHHHhc
Q 016605 194 --GL---TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA--EEDRVGLLHTLAT 259 (386)
Q Consensus 194 --G~---~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget--~ed~~~~l~~l~~ 259 (386)
.+ ..+.+++ +...++--.+...-.+.++|...--+.+.|+||- .-.+++++..++.
T Consensus 278 ~~~~~~~~~i~I~~----------H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 278 KANTPGIDDIVFSV----------HCHNDLGLATANTIAGICAGARQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred HHHhccccCceeEe----------cccCCcChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHh
Confidence 11 1122322 1111222222333344588987544567788762 1334444444443
No 429
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.97 E-value=1e+02 Score=28.95 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--------C---------CCCHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--------G---------MLEKH 185 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--------g---------~l~~e 185 (386)
+.|.+. .+.+.|++.|-+-|+. .++ ..+.....+.++.++..|+.+.... + .-+++
T Consensus 86 ~~e~i~----~Ai~~GftSVM~DgS~-l~~--eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~pe 158 (284)
T PRK09195 86 KFDDIA----QKVRSGVRSVMIDGSH-LPF--AQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPA 158 (284)
T ss_pred CHHHHH----HHHHcCCCEEEeCCCC-CCH--HHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHH
Confidence 455544 4556799998775543 211 2456666777777776665432111 1 22556
Q ss_pred HHHHHH-HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHH
Q 016605 186 QAIELK-KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGL 253 (386)
Q Consensus 186 ~l~~Lk-~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~ 253 (386)
.++++. +-|+|.+.+++-+.--.|+. .+.-+++ +++.|+.. .++++ ++-|- |-.++++.+.
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~--~~vPL---VLHGgSG~~~e~~~~a 221 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFD-RLENIRQW--VNIPL---VLHGASGLPTKDIQQT 221 (284)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCe---EEecCCCCCHHHHHHH
Confidence 666665 56999999888665333332 2333555 33333332 25544 33343 5555554444
No 430
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=68.89 E-value=94 Score=28.41 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=94.4
Q ss_pred EecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC--CCCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHHH
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT--TRSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~--~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~~ 253 (386)
+.++..+.-..+.+.++|++.+.++=-.....+ .... .-++++.++.++.+.+. .+++..++=.|.| +.+++.++
T Consensus 12 ~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g-~~~~~~~~ 89 (243)
T cd00377 12 VLPGAWDALSARLAERAGFKAIYTSGAGVAASL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG-NALNVART 89 (243)
T ss_pred EecCCCCHHHHHHHHHcCCCEEEeccHHHHHhc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC-CHHHHHHH
Confidence 445667888888888999998887432222122 1111 23789999888886654 6788888888887 45888888
Q ss_pred HHHHhcCCCCCCeEeeeeee-ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeec--Cccc---ccC--hhHHH
Q 016605 254 LHTLATLPTHPESVPINALL-AVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLS--AGRV---RFS--MPEQA 322 (386)
Q Consensus 254 l~~l~~l~~~~~~v~~~~f~-P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~--~g~~---~~~--~~~~~ 322 (386)
++.+.+.| +.-+.+---. |............+.++..+.+..++....+ ..+... +.+. .+. -....
T Consensus 90 v~~~~~~G--~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 90 VRELEEAG--AAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHcC--CEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 88888775 5455542211 2221112345667899999988887766543 333222 1111 111 12234
Q ss_pred hhhhcCccccccC
Q 016605 323 LCFLAGANSIFTG 335 (386)
Q Consensus 323 ~~l~~Gan~~~~g 335 (386)
....+||+.++..
T Consensus 168 ay~~AGAD~v~v~ 180 (243)
T cd00377 168 AYAEAGADGIFVE 180 (243)
T ss_pred HHHHcCCCEEEeC
Confidence 4567899998643
No 431
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=68.85 E-value=42 Score=30.28 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
++.+++.+.++.+.+.|++-|.-.+|. .+.| ...+.+.-+.+.+. -.+.+-..-|..+.+.+..+.++|.+++..
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~-~~~g--at~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF-STGG--ATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGT 207 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCC--CCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEcc
Confidence 667777777777777777744333332 2222 12233322222222 124455566777778888888888777665
No 432
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.65 E-value=34 Score=31.06 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++.-=... .|.+.+ .++++.+. ..++++.+-.|..+.+.++.+.++|++++.++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n----~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDN----DEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCcc----HHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4455667777889999887532111 122223 44555554 34677878889999999999999999999987766
Q ss_pred h
Q 016605 205 S 205 (386)
Q Consensus 205 ~ 205 (386)
+
T Consensus 111 ~ 111 (233)
T cd04723 111 L 111 (233)
T ss_pred c
Confidence 5
No 433
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=68.51 E-value=55 Score=30.13 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 216 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
....+.++.++.+++.|+.+..+.++ ++.=-+...+.+...+
T Consensus 215 GGi~~~~~~~~~A~~~gi~~~~~~~~---~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 215 GGLTKAQRVLAVAEALGLPVMVGSMI---ESGLGTLANAHLAAAL 256 (265)
T ss_pred cCHHHHHHHHHHHHHcCCcEEecCcc---chHHHHHHHHHHHHhC
Confidence 45778888899999999988776544 2322334444554444
No 434
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=68.35 E-value=22 Score=34.35 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=42.7
Q ss_pred cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE-ecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCC
Q 016605 137 AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT 215 (386)
Q Consensus 137 ~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~-t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~ 215 (386)
.|++.|+..-. ..+.|++..++.+.+.-+.+.+.|+...+ ..-.+ .+ ..| .| .+.- .
T Consensus 24 ~Gv~giV~al~-~~p~g~~W~~e~i~~~k~~ie~~GL~~~vIEsvpv-~e---~Ik-lG-------~~~R---------D 81 (351)
T PF03786_consen 24 PGVTGIVTALH-DIPNGEVWDYEEIRALKERIEAAGLTLSVIESVPV-HE---DIK-LG-------LPGR---------D 81 (351)
T ss_dssp TTEEEEEE--S-SS-TTS---HHHHHHHHHHHHCTT-EEEEEES-----H---HHH-CT--------TTH---------H
T ss_pred cCCCCeeeCCC-CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCh-HH---HHh-cC-------CCcH---------H
Confidence 38877755432 23446777778888888888877877432 11111 11 111 11 1111 1
Q ss_pred CCHHHHHHHHHHHHHcCCe-eeEeEEeecCC
Q 016605 216 RSYDERLETLKHVREAGIN-VCSGGIIGLGE 245 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glge 245 (386)
...+.+.+.|+++.++||+ ++.++|..++-
T Consensus 82 ~~Ieny~~~Irnlg~~GI~vvcYNFMPv~dW 112 (351)
T PF03786_consen 82 EEIENYKQTIRNLGKAGIKVVCYNFMPVFDW 112 (351)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEE--SS-S-
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeeeeeee
Confidence 1356777899999999998 78888876654
No 435
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=68.29 E-value=1.1e+02 Score=28.87 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.+.+...++.+.+.+.. +.++... .. ..-...+.+..+++.+. +..++++++... -+.+.+++-.++|+++|-
T Consensus 25 ~n~e~~~avi~AAe~~~sP-vIlq~~~-~~-~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM 101 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSP-VILQISP-SE-VKYMGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVM 101 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS--EEEEEEH-HH-HHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEE
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcch-hh-hhhhhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccccc
Confidence 4678888888888888764 4454321 00 01123467777777765 568887666443 468888888899999887
Q ss_pred cccCch--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--EeEEeec-CC--C-H------HHHHHHHHHHhcCCCCCC
Q 016605 200 HNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGL-GE--A-E------EDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 200 i~le~~--~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~--~~~i~Gl-ge--t-~------ed~~~~l~~l~~l~~~~~ 265 (386)
++--.. ++ +.....+..+.++..|+.|. .+.+-|. .. + . -+..+..+|+++-+ +|
T Consensus 102 ~DgS~l~~ee---------Ni~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tg--vD 170 (287)
T PF01116_consen 102 IDGSALPFEE---------NIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETG--VD 170 (287)
T ss_dssp EE-TTS-HHH---------HHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHT--TS
T ss_pred ccCCcCCHHH---------HHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhC--CC
Confidence 643222 22 23445578888999998754 4556544 11 1 0 14566677777776 66
Q ss_pred eEeeeeeeecCCCCCCC-----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 266 SVPINALLAVKGTPLQD-----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~-----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
.+.+.. ||.-+. .|.++.+.+.++....+ +..+-+- |--++..+.-..+...|++-+
T Consensus 171 ~LAvai-----Gt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlH-GgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 171 ALAVAI-----GTAHGMYKGGKKPKLDFDRLKEIREAVP----DIPLVLH-GGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp EEEE-S-----SSBSSSBSSSSSTC--HHHHHHHHHHHH----TSEEEES-SCTTS-HHHHHHHHHTTEEEE
T ss_pred EEEEec-----CccccccCCCCCcccCHHHHHHHHHhcC----CCCEEEE-CCCCCCHHHHHHHHHcCceEE
Confidence 654433 443221 23334444333333222 2112222 223344444567888888876
No 436
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.23 E-value=95 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 165 VKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 165 i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++.+++ .++++.+..|.-+++.+.+..+.|++.+.++
T Consensus 167 i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 167 LRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 444443 3566777777788888888888888887764
No 437
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=68.22 E-value=38 Score=30.83 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
++.++.++.+.+.|+..+.+-... .|.+. --++.|+.+++. .+++..+.|..+.+.+.++.++|++.|.++
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~~---~g~~~---a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAMY---PGKPY---ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeCC---CCCch---hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 355566667777777777663211 12110 224555666543 367777777778777777777888887764
No 438
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=68.17 E-value=1.1e+02 Score=28.77 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHc----CCcEEEEecccC--C-CC---CChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHH
Q 016605 123 TKDAVMQAAQKAKEA----GSTRFCMGAAWR--D-TI---GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK 191 (386)
Q Consensus 123 s~eeI~~~~~~~~~~----G~~~v~l~~g~~--~-~~---ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk 191 (386)
+.|.+++.++.+++. |+. +++.|+.. + |. -.-...++=+++++++| +.|+++.+. ..+.+.++...
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~-~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTe--V~~~~q~~~va 104 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLP-LVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTD--VHESSQCEAVG 104 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCc-EEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEe--eCCHHHHHHHH
Confidence 567777777777764 774 44555433 1 10 01123477788888888 568887553 36788999998
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++ +|.+.|+.-.. +..+.++.+.+.|..|.. ==|..-+.+|+...++.+..-| + +.|.+
T Consensus 105 e~-~DilQIgAr~~--------------rqtdLL~a~~~tgkpV~l--KkGq~~t~~e~~~aaeki~~~G-N-~~viL-- 163 (290)
T PLN03033 105 KV-ADIIQIPAFLC--------------RQTDLLVAAAKTGKIINI--KKGQFCAPSVMRNSAEKVRLAG-N-PNVMV-- 163 (290)
T ss_pred hh-CcEEeeCcHHH--------------HHHHHHHHHHccCCeEEe--CCCCCCCHHHHHHHHHHHHHcC-C-CcEEE--
Confidence 88 68888864221 112444455555543322 2244458888888888888876 2 23322
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceee------------------cCcccccChhHHHhhhhcCccccc
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL------------------SAGRVRFSMPEQALCFLAGANSIF 333 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i------------------~~g~~~~~~~~~~~~l~~Gan~~~ 333 (386)
-..|+.+. ......+ ++-+.+.+...-..++-. ++|.-.+.+.....++.+||+.+|
T Consensus 164 --cERG~tFg-y~~lv~D--~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlf 238 (290)
T PLN03033 164 --CERGTMFG-YNDLIVD--PRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIF 238 (290)
T ss_pred --EeCCCCcC-CCCcccc--hhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 23355442 1111111 122223332211111111 123334556777788899999997
Q ss_pred cC
Q 016605 334 TG 335 (386)
Q Consensus 334 ~g 335 (386)
.+
T Consensus 239 iE 240 (290)
T PLN03033 239 ME 240 (290)
T ss_pred EE
Confidence 55
No 439
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=68.15 E-value=62 Score=30.45 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred CCHHH----HHHHHHHHHHcCCcEE-EEecc-cCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHH
Q 016605 122 MTKDA----VMQAAQKAKEAGSTRF-CMGAA-WRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~ee----I~~~~~~~~~~G~~~v-~l~~g-~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~ 192 (386)
++.+| +.+.++.+++.|..-. .+... +.+..+ ....+++.++++.+.+.|.. +.-|.|..++..+..+.+
T Consensus 113 ~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~ 191 (287)
T PRK05692 113 CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG-EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLE 191 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHH
Confidence 45555 4455556667776421 12211 112222 24568888998888887765 345678887776665543
Q ss_pred h---ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 193 A---GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 193 a---G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
. .++.+.+++ +...++--.+...-.+.++|...--+-+-|+|+
T Consensus 192 ~l~~~~~~~~i~~----------H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 192 AVLAEFPAERLAG----------HFHDTYGQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred HHHHhCCCCeEEE----------EecCCCCcHHHHHHHHHHhCCCEEEEEccccCC
Confidence 2 122122222 111122222333335567888755455666765
No 440
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.02 E-value=72 Score=30.38 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHH-HhccCeeecccC
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYNHNLD 203 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk-~aG~~~v~i~le 203 (386)
++.+.++.+.+.|++.+.+.+... ..+.. -...++.++.+++ .++++..+.|..+.+.+..+. ..|+|.|.++=-
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~-~~~~~--~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTR-AQGYS--GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccc-cccCC--CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 455666777778888887754211 11110 0223567777774 477888888888888888776 578999988643
No 441
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=67.83 E-value=35 Score=33.32 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChhh--HHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cC
Q 016605 122 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTN--FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~~--~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~ 196 (386)
.+.++..+.++.+.+.| +..+.++++.....+.... ..+.....+.++. ..+++..+.+..+++.++.+.+.| +|
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 35566666666666666 4555555443221111111 1233344444442 234444444455666666666665 66
Q ss_pred eeecc
Q 016605 197 AYNHN 201 (386)
Q Consensus 197 ~v~i~ 201 (386)
.|.++
T Consensus 314 lVa~g 318 (363)
T COG1902 314 LVAMG 318 (363)
T ss_pred EEEec
Confidence 55554
No 442
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.63 E-value=36 Score=31.88 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHcCC-cEEEEe
Q 016605 121 LMTKDAVMQAAQKAKEAGS-TRFCMG 145 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~-~~v~l~ 145 (386)
..+.++..+.++.+++.-. ..|++.
T Consensus 129 l~~~~e~v~rIkAa~~a~~~~~fvi~ 154 (289)
T COG2513 129 LVSIDEMVDRIKAAVEARRDPDFVII 154 (289)
T ss_pred cCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4677777777777766432 344444
No 443
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=67.61 E-value=37 Score=33.40 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHh
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYS 210 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~ 210 (386)
++.+++.|++.| ++.-.+.+.|+....+.+.+.-+.+.+.|+...+ +|+.+ +++
T Consensus 16 l~~irQ~G~~gi-V~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~v------------------------vEs~p-v~e 69 (394)
T TIGR00695 16 LEDVRQAGATGI-VTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSV------------------------VESVP-VHE 69 (394)
T ss_pred HHHHhhcCCcce-eecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE------------------------EeCCC-ccH
Q ss_pred hhCCCCC-----HHHHHHHHHHHHHcCCe-eeEeEEeecCCC
Q 016605 211 KIITTRS-----YDERLETLKHVREAGIN-VCSGGIIGLGEA 246 (386)
Q Consensus 211 ~i~~~~s-----~~~~l~~i~~a~~~Gi~-v~~~~i~Glget 246 (386)
.|..+.. .+.+.+.|+++.++||+ ++.++|..+.-+
T Consensus 70 ~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMPv~dW~ 111 (394)
T TIGR00695 70 AIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMPVLDWT 111 (394)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEeccccccc
No 444
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=67.59 E-value=31 Score=32.27 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=40.1
Q ss_pred HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
++.+.|++.+.+- ....+++.+.++.+++. ++.+..+ |-++.+.+..+.+.|+|.++.|-
T Consensus 203 ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leas-GGI~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 203 TVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAA-GGINPENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 3445666555442 23457777887777643 3344444 55789999999999999998753
No 445
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=67.49 E-value=48 Score=30.34 Aligned_cols=76 Identities=14% Similarity=0.005 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
++.+ .++...+.|.+.+++.--.... |.+.+.+.+.++++ ...+++.+-.|..+.+.++.+.++|++++.++-
T Consensus 32 ~p~~---~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~---~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLES---AAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVK---LLVVVEELSGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHH---HHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHH---HCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence 5544 3455566788877775321111 34444443333332 345677888899999999999999999999876
Q ss_pred Cch
Q 016605 203 DTS 205 (386)
Q Consensus 203 e~~ 205 (386)
.++
T Consensus 105 ~a~ 107 (243)
T TIGR01919 105 AAL 107 (243)
T ss_pred hhh
Confidence 655
No 446
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=67.35 E-value=1e+02 Score=29.97 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCHHHHH----HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVM----QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~----~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG 194 (386)
++.++++ +.++.+++.|. .+.+.. .+ ......+++.++++.+.+.|.. ++-|.|..+++.+..+.+.=
T Consensus 106 ~s~~e~l~~~~~~i~~ak~~g~-~v~~~~--ed--~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 106 KDRAWVLERLARLVSFARDRGL-FVSVGG--ED--ASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEee--cC--CCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHH
Confidence 4556655 55556667775 354432 11 1124568889998888877654 45578988877776664431
Q ss_pred cCe--eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 195 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 195 ~~~--v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
.+. +.+++ +...++--.+...-.+.++|...--+.+.|+||
T Consensus 181 ~~~~~v~l~~----------H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe 223 (365)
T TIGR02660 181 RQAVDLPLEM----------HAHNDLGMATANTLAAVRAGATHVNTTVNGLGE 223 (365)
T ss_pred HHhcCCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEEeecccc
Confidence 111 22222 222233333444445668898865667778876
No 447
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=67.28 E-value=31 Score=31.35 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHh-ccCeeecc
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 201 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~a-G~~~v~i~ 201 (386)
..+..+.++.+.+.|++.+.+.+-......+.. -+++++.+++ .++++..+.|..+.+.+..+.+. |++.+.++
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~----~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY----DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC----CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 445566667777889998877543211111112 2455555553 47788888888889889888876 89888774
No 448
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=66.96 E-value=98 Score=28.39 Aligned_cols=53 Identities=21% Similarity=0.158 Sum_probs=32.3
Q ss_pred CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 016605 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 232 (386)
Q Consensus 172 g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~G 232 (386)
++++.+..|.-+++.+....+.|++.+.++= .|.+..++....+++..+.++|
T Consensus 175 ~vpVI~egGI~tpeda~~AmelGAdgVlV~S--------AIt~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNT--------AIAKAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh--------HhcCCCCHHHHHHHHHHHHHHH
Confidence 5667677777788888888888888877642 2223344444444444444443
No 449
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=66.85 E-value=88 Score=29.59 Aligned_cols=32 Identities=13% Similarity=-0.066 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 153 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g 153 (386)
.+.+++...+..+.+.|++.|...+|+.+..+
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~ 125 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGS 125 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence 57889999989999999999988887755444
No 450
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=66.66 E-value=2.2e+02 Score=32.51 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
-+.+++++.+++..+.|..-+-+.++ .+...+...+.+++..+....+. .+++++ .....+.++.--+. |...|
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~-~~~vd~~eem~rvv~~i~~~~~~~~vPlsI--DS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVD-YGMLDGVAAMKRFLNLLASEPDISTVPLML--DSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHhccCCCCCeEEE--eCCcHHHHHHHHHhcCCCCEE
Confidence 57899999999999999987766554 22222233444454444331112 455443 34567777776665 76666
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHHHHH----HHHHhc-CCCCCCeEeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGL----LHTLAT-LPTHPESVPIN 270 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~----l~~l~~-l~~~~~~v~~~ 270 (386)
| ++.+.. ...++ +.+..++++|..+....+ -|...|.++..+. ++.+.+ .|..++.|.|-
T Consensus 442 NsIs~~~g---------~~~~~---~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~D 509 (1178)
T TIGR02082 442 NSISLKDG---------EERFI---ETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIFD 509 (1178)
T ss_pred EeCCCCCC---------CccHH---HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 5 333211 01222 556778888987655444 3555566655444 444443 55444555555
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC------------hhHHHhhhhcCccccc
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS------------MPEQALCFLAGANSIF 333 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~------------~~~~~~~l~~Gan~~~ 333 (386)
+.+-.-++-.. .......+.++.+...+..+|...+-+.-++.+|+ .-.-.+++.+|-+.-+
T Consensus 510 P~i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a~~~Gld~aI 583 (1178)
T TIGR02082 510 PNILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHAIRAGMDMGI 583 (1178)
T ss_pred CCccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHHHHcCCchhh
Confidence 44321122110 00012334455556666667764332222222222 1233556677777653
No 451
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.60 E-value=1.2e+02 Score=28.79 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHhccCeeecccC-ch--HHHHhh---hCC---CCCHHHH----HHHHHHHHHc---CCeeeEeEEee----cCC
Q 016605 186 QAIELKKAGLTAYNHNLD-TS--REFYSK---IIT---TRSYDER----LETLKHVREA---GINVCSGGIIG----LGE 245 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le-~~--~~~~~~---i~~---~~s~~~~----l~~i~~a~~~---Gi~v~~~~i~G----lge 245 (386)
.+++++++|+|.|.+..- +. ...+.- .+. +.+++.+ ++.++.+++. ++.+.+-+-.. -|.
T Consensus 146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~ 225 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGL 225 (327)
T ss_pred HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCC
Confidence 355566778888877542 11 111111 011 2344444 4555665553 33333332211 135
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
+.++..++++.+.+.+ ++.+.+...
T Consensus 226 ~~~e~~~la~~l~~~G--~d~i~vs~g 250 (327)
T cd02803 226 TLEEAIEIAKALEEAG--VDALHVSGG 250 (327)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEeCCC
Confidence 7889999999999986 777776553
No 452
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=34 Score=33.21 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCCh--hhHHHHHHHHHHHhhcCcEEEE--e----cCCCC--HHHHHHHHHhccCe
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRDMGMEVCC--T----LGMLE--KHQAIELKKAGLTA 197 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~~~~~l~~~i~~ik~~g~~i~~--t----~g~l~--~e~l~~Lk~aG~~~ 197 (386)
++.++.+.+.|++.|++++.....-+.. ...+++.+.++.+++.|.++.+ | ++.+. .+.++.|.+.|+|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Confidence 3445566678888888864311111112 4557899999999988886422 2 22233 57788899999999
Q ss_pred eecccCchHHHHhhhCC-------CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHH
Q 016605 198 YNHNLDTSREFYSKIIT-------TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 257 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~-------~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l 257 (386)
+-++-=++=.+.+...| ....-...++++.+++.|.... ++-.--+.+++.++.+.+
T Consensus 96 viv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv---Vl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 96 VIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV---VLPRELSLEEIKEIKEQT 159 (347)
T ss_pred EEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE---EeCccCCHHHHHHHHHhC
Confidence 88754333122222121 1112233467788889995321 111234677777776655
No 453
>PRK15447 putative protease; Provisional
Probab=66.17 E-value=34 Score=32.43 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG 239 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 239 (386)
-+..+..+.+.|+|.|.++.+.+ .+ ..-+.+++.++++.++++|.++...+
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R------~~f~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKR------RELKVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCc------cCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 36778888888999999997665 22 24588999999999999998866644
No 454
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=66.11 E-value=95 Score=29.76 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHH
Q 016605 216 RSYDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIR 293 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~ 293 (386)
.+++.+.+.++.++++. ++|++-+=+|..+..-...+..+.+.+.| ++.+.++.-+...+.. .+.+ ..
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g--~~~ltVHgRtr~~~y~----~~ad----~~ 187 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAG--ADALTVHGRTRAQGYL----GPAD----WD 187 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcC--CCEEEEecccHHhcCC----CccC----HH
Confidence 36777778888877764 78888777766332222556667777775 6677766654433211 1122 33
Q ss_pred HHHHHHHhCCCcceeecCcccccChhHHHhhhh-cCccccccCC
Q 016605 294 MIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGE 336 (386)
Q Consensus 294 ~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~-~Gan~~~~g~ 336 (386)
.++..+..+++ +.-+..|-+. ..+.....+. .||+++|.|.
T Consensus 188 ~I~~vk~~~~~-ipvi~NGdI~-s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 188 YIKELKEAVPS-IPVIANGDIK-SLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHHHhCCC-CeEEeCCCcC-CHHHHHHHHHhhCCCEEEEcH
Confidence 34555556655 2223333222 2222344444 6799998774
No 455
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=66.06 E-value=88 Score=28.11 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=62.0
Q ss_pred EecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHH----H
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDR----V 251 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~----~ 251 (386)
..+|...+..+...|+.|+..|.|-=|-. -..|..+..+.++. ..+.++|+. ++++-+|-+++..+++ .
T Consensus 13 ~aP~l~v~affa~ak~lg~s~VeiRndl~---~~~I~dg~p~a~vk---a~Aek~Gl~IvSINAlypFn~wt~~~~a~a~ 86 (272)
T COG4130 13 AAPGLSVEAFFALAKRLGLSKVEIRNDLP---SNAIADGTPAAEVK---ALAEKAGLTIVSINALYPFNEWTEERVAEAR 86 (272)
T ss_pred cCCCCCHHHHHHHHHHcCcceeEEecCCC---cccccCCCCHHHHH---HHHHHcCcEEEEeeccccccccChHHHHHHH
Confidence 34565556667777778887777632221 00222334454443 345678998 7788888777755555 4
Q ss_pred HHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 252 GLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 252 ~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
.+++..+..| ...+.+ .|.-.-.+ .......+.+...+...+.++..
T Consensus 87 ~la~yA~acG--A~aLvl---cPlNd~s~-~~~~vr~~~lv~AlkaLkpil~~ 133 (272)
T COG4130 87 GLADYAAACG--AKALVL---CPLNDGSW-PGTAVRREDLVEALKALKPILDE 133 (272)
T ss_pred HHHHHHHhcC--CceEEE---EeccCCCC-CCcccchHHHHHHHHHhhHHHHH
Confidence 5566666665 333332 33222111 12223455555555555655543
No 456
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.03 E-value=1.2e+02 Score=28.55 Aligned_cols=187 Identities=10% Similarity=0.074 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.|.+...++.+.+.+.. +.++.+ +...+ ..++.+..+++.+. +..++++++... .+.+.+++..++|+++|
T Consensus 26 ~n~e~~~avi~AAee~~sP-vIiq~~~~~~~~---~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 26 HNLETMQVVVETAAELHSP-VIIAGTPGTFSY---AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcChhHHhh---CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4567777777777777754 444432 11111 23456777777654 557787777554 37888999999999988
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE--eEEeecCCC---------HHHHHHHHHHHhcCCCCCCeE
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGLGEA---------EEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~--~~i~Glget---------~ed~~~~l~~l~~l~~~~~~v 267 (386)
-++--.++ . ..+.+...+..+.++..|+.|.. +.+-|-.+. .-+..+..+|+++.| +|.+
T Consensus 102 M~DgS~l~-~------eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg--vD~L 172 (284)
T PRK09195 102 MIDGSHLP-F------AQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG--IDSL 172 (284)
T ss_pred EeCCCCCC-H------HHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC--cCEE
Confidence 87543321 0 11234445778889999987544 445333111 114456677777776 5554
Q ss_pred eeeeeeecCCCCCC---CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 268 PINALLAVKGTPLQ---DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 268 ~~~~f~P~~gT~l~---~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
-+.. ||.-+ ..+.++.+.+.++.. .. +..+-+-++ -++..+.-..+...|++-+
T Consensus 173 Avai-----Gt~HG~y~~~p~Ld~~~L~~I~~----~~-~vPLVLHGg-SG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 173 AVAI-----GTAHGMYKGEPKLDFDRLENIRQ----WV-NIPLVLHGA-SGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred eecc-----CccccccCCCCcCCHHHHHHHHH----Hh-CCCeEEecC-CCCCHHHHHHHHHcCCeEE
Confidence 4433 33211 123455554333322 12 111112121 2333444466788898877
No 457
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=66.00 E-value=55 Score=29.46 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCCHHHHHHHHHhccCeeec--
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAYNH-- 200 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i-- 200 (386)
+...+.++.+.+.|.+.+.+-. | .-+.+.+++..+|+.|+. +..++++- -+.++-+-+. +|.|.+
T Consensus 71 ~~p~~~i~~fa~agad~It~H~-------E--~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp-~~~i~~~l~~-vD~VllMs 139 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHA-------E--ATEHIHRTIQLIKELGVKAGLVLNPATP-LEALEPVLDD-VDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEe-------c--cCcCHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhh-CCEEEEEe
Confidence 3445556677778888877643 1 224577788888888877 45666653 3444443332 455442
Q ss_pred -----ccCch-HHHHhhhC
Q 016605 201 -----NLDTS-REFYSKII 213 (386)
Q Consensus 201 -----~le~~-~~~~~~i~ 213 (386)
+=|.+ ++++++++
T Consensus 140 VnPGfgGQ~Fi~~~l~Ki~ 158 (220)
T COG0036 140 VNPGFGGQKFIPEVLEKIR 158 (220)
T ss_pred ECCCCcccccCHHHHHHHH
Confidence 22455 56666554
No 458
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=65.99 E-value=31 Score=29.87 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=48.9
Q ss_pred HHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC--------C------HHHH
Q 016605 187 AIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE--------A------EEDR 250 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge--------t------~ed~ 250 (386)
++.++++|++.|.+..... +.... .+..-+..+.+.++|+.+.+...... .. + .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 4678899999999876554 22111 34445566778899999555433323 22 1 6788
Q ss_pred HHHHHHHhcCCCCCCeEeee
Q 016605 251 VGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 251 ~~~l~~l~~l~~~~~~v~~~ 270 (386)
.+.++.++.++ ++.+.+.
T Consensus 74 ~~~i~~a~~lg--~~~i~~~ 91 (213)
T PF01261_consen 74 KKAIDLAKRLG--AKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHT--BSEEEEE
T ss_pred HHHHHHHHHhC--CCceeec
Confidence 88889999996 6565554
No 459
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=65.97 E-value=1e+02 Score=27.83 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec-ccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH-NLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i-~le~~ 205 (386)
..+.++.+.+.|.+.|.++| .. | ...+.+.++++.+|+..+++..-+|.. +.+. -+.|.+.+ ++
T Consensus 16 ~~~~~~~~~~~gtdai~vGG-S~---~--vt~~~~~~~v~~ik~~~lPvilfp~~~--~~i~----~~aDa~l~~sv--- 80 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGG-SQ---G--VTYEKTDTLIEALRRYGLPIILFPSNP--TNVS----RDADALFFPSV--- 80 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcC-CC---c--ccHHHHHHHHHHHhccCCCEEEeCCCc--cccC----cCCCEEEEEEe---
Confidence 34456677778887775544 22 1 244678888888887777765555432 1111 23566554 22
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCee-e-EeEEeecC-------------CCHHHHHHHHHHHhcC
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGINV-C-SGGIIGLG-------------EAEEDRVGLLHTLATL 260 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v-~-~~~i~Glg-------------et~ed~~~~l~~l~~l 260 (386)
++.-++.--.....+++..+.+.+.++ - .-++++.| .+.+|+........++
T Consensus 81 ---lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~ 147 (223)
T TIGR01768 81 ---LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEM 147 (223)
T ss_pred ---ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHH
Confidence 111111111234456667777777653 2 23334332 2446666666666553
No 460
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=65.95 E-value=1.2e+02 Score=31.82 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcE--EEE--ecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCC--TLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~--i~~--t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++.+++.++++.+.|++.|++- ++.|- ..-..+.++++.+++ .+++ +++ +.|.-....+..+ ++|++
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~----Dt~G~-~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv-~aGad 224 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIK----DMAGL-LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAV-EAGVD 224 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC----CcCCC-cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHH-HhCCC
Confidence 478999999999999999999883 22221 233567777777764 3333 333 3455445555554 78999
Q ss_pred eeecccCch
Q 016605 197 AYNHNLDTS 205 (386)
Q Consensus 197 ~v~i~le~~ 205 (386)
.+..++.++
T Consensus 225 ~vD~ai~g~ 233 (592)
T PRK09282 225 IIDTAISPL 233 (592)
T ss_pred EEEeecccc
Confidence 999888775
No 461
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=65.92 E-value=81 Score=29.16 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHh---ccCe-
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKA---GLTA- 197 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~a---G~~~- 197 (386)
+.+.+.++.+++.|. .+.++. +..+ ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+. -+..
T Consensus 114 ~~~~~~i~~a~~~G~-~v~~~~---~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 188 (268)
T cd07940 114 ERAVEAVEYAKSHGL-DVEFSA---EDAT-RTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI 188 (268)
T ss_pred HHHHHHHHHHHHcCC-eEEEee---ecCC-CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 445566667777885 455532 1111 24568889999988887765 3446888887776655332 1111
Q ss_pred -eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 198 -YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 198 -v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
+.+++ +...++.-.+...-.+.++|...--+-+.|+|+
T Consensus 189 ~i~l~~----------H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 189 KVPISV----------HCHNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred ceeEEE----------EecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 33322 112233333344444456798755556677765
No 462
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=65.58 E-value=51 Score=31.16 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
..+.++..+.++.+++. ....+++..=. +... ...+++.++-.+...+.|..+..-.|..+.+.++++.+.
T Consensus 128 lv~~ee~~~kI~Aa~~A~~~~d~~I~ART-Da~~-~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~ 199 (294)
T TIGR02319 128 LISTEEMTGKIEAAVEAREDEDFTIIART-DARE-SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDE 199 (294)
T ss_pred ccCHHHHHHHHHHHHHhccCCCeEEEEEe-cccc-cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHh
Confidence 36788888888777653 22235443311 1111 112333333333334567775444667777888887765
No 463
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=65.39 E-value=1.3e+02 Score=30.52 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.-..+.++.|.++|++.+.+.. . .+|+ +..++.++.+++.- ..+.+|.|.+-|.+....+++ .
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~--a--------~g~~-~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~l~~----~ 286 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDT--A--------HGHQ-VKMISAIKAVRALD--LGVPIVAGNVVSAEGVRDLLE----A 286 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeC--C--------CCCc-HHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHHHHH----h
Confidence 3457999999999999987743 1 1333 67778888888753 234566687778777766654 5
Q ss_pred CCCCCeEeeeeeeecCCCCC-----CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 261 PTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l-----~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
| ++.+.+.. -|||-. .....+...-.++....++.. + ..-+..|.+....+ -..+|.+||+.++.|
T Consensus 287 G--~d~i~vg~---g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~-~~viadGgi~~~~d-i~kala~GA~~vm~g 357 (475)
T TIGR01303 287 G--ANIIKVGV---GPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--G-GHVWADGGVRHPRD-VALALAAGASNVMVG 357 (475)
T ss_pred C--CCEEEECC---cCCccccCccccCCCCchHHHHHHHHHHHHHc--C-CcEEEeCCCCCHHH-HHHHHHcCCCEEeec
Confidence 4 55555322 112211 111223333334444444443 2 22234444544444 378999999998655
No 464
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.32 E-value=35 Score=30.54 Aligned_cols=74 Identities=12% Similarity=0.298 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCC-CCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHh-ccCeeecc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 201 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~a-G~~~v~i~ 201 (386)
++..+.++.+.+.|+..+.+.+..... ...+.. ++.++.+++ .++++..+.|..+.+.+.++.+. |+|.+.++
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~----~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPAD----WDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCC----HHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 366666666666777666664432110 111112 234444543 35666666666677777777666 67777765
Q ss_pred c
Q 016605 202 L 202 (386)
Q Consensus 202 l 202 (386)
=
T Consensus 214 r 214 (231)
T cd02801 214 R 214 (231)
T ss_pred H
Confidence 3
No 465
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=65.17 E-value=58 Score=31.50 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcC--cEEEEecCCCC------H-HHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHH
Q 016605 158 FNQILEYVKDIRDMG--MEVCCTLGMLE------K-HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHV 228 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g--~~i~~t~g~l~------~-e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a 228 (386)
...+.+.++.+++.| +.+.++.|... . ...+.+ ..|.++|.+|+...+ + -+.++.+
T Consensus 178 ~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~RIGHG~~~~~----------d----p~ll~~l 242 (345)
T cd01321 178 LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTKRIGHGFALPK----------H----PLLMDLV 242 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCCcCccccccCc----------C----HHHHHHH
Confidence 456667777777767 77666666432 2 344444 578888888776541 1 1456777
Q ss_pred HHcCCeeeE
Q 016605 229 REAGINVCS 237 (386)
Q Consensus 229 ~~~Gi~v~~ 237 (386)
++.+|.+.+
T Consensus 243 ~~~~I~lEv 251 (345)
T cd01321 243 KKKNIAIEV 251 (345)
T ss_pred HHcCCeEEE
Confidence 788876543
No 466
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=64.98 E-value=62 Score=29.22 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
+++.++.+ .+.+.|+.++.++.-...=.+.-..+ ++++.+. ..++++...-|.-+.+.+++|++.|++.+.+
T Consensus 147 ~~~~~~~~---~~~~~g~~~ii~tdi~~dGt~~G~d~----~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAK---RLEELGAGEIILTDIDRDGTMQGPDL----ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHH---HHHHTT-SEEEEEETTTTTTSSS--H----HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHH---HHHhcCCcEEEEeeccccCCcCCCCH----HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 55666554 55568999998765432211111122 4455554 3478888889999999999999999988776
Q ss_pred c
Q 016605 201 N 201 (386)
Q Consensus 201 ~ 201 (386)
+
T Consensus 220 g 220 (229)
T PF00977_consen 220 G 220 (229)
T ss_dssp S
T ss_pred e
Confidence 4
No 467
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.90 E-value=72 Score=30.03 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEecccCC-CC-CCh--hhHHHHHHHHHHHhhc-CcEEEEecC--C-CCHHHHHHHHHh
Q 016605 123 TKDAVMQAAQKAKEAG-STRFCMGAAWRD-TI-GRK--TNFNQILEYVKDIRDM-GMEVCCTLG--M-LEKHQAIELKKA 193 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G-~~~v~l~~g~~~-~~-ge~--~~~~~l~~~i~~ik~~-g~~i~~t~g--~-l~~e~l~~Lk~a 193 (386)
+++++.+.++.+.+.| ++.|-+-.+-.. .. |.. ...+.+.++++.+++. .+++.+-.. . -..+.++.+.++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~ 181 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEA 181 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHc
Confidence 4788899899888888 888766221100 00 111 1246778888888854 556544322 1 124567888899
Q ss_pred ccCeeec
Q 016605 194 GLTAYNH 200 (386)
Q Consensus 194 G~~~v~i 200 (386)
|+|.+.+
T Consensus 182 G~d~i~~ 188 (301)
T PRK07259 182 GADGLSL 188 (301)
T ss_pred CCCEEEE
Confidence 9998754
No 468
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=64.89 E-value=34 Score=32.90 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cCeee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 199 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~~v~ 199 (386)
++++.++.++.+.+.|+.-+.+.+|+.... ..+....+..+.++.+++ ..+++..+-+..+.+.++.+.+.| +|.|.
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 355555555555555555444433221100 000001122334444442 244554444445555555555554 55555
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
+
T Consensus 319 ~ 319 (336)
T cd02932 319 L 319 (336)
T ss_pred h
Confidence 4
No 469
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=64.80 E-value=96 Score=27.05 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcE--E-EEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME--V-CCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~--i-~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
+++..+.+.++.+.+.|++.+.+.-.+.+.. + ....-.+.++.+++. ... + ...+. ..+.++.+.++|++.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~--~-~~~~~~~~~~~i~~~~~~~~~v~l~~~d--~~~~~~~~~~~g~dg 83 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGHFV--P-NLTFGPPVVKALRKHTDLPLDVHLMVEN--PERYIEAFAKAGADI 83 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC--C-ccccCHHHHHHHHhhCCCcEEEEeeeCC--HHHHHHHHHHcCCCE
Confidence 5677788888899999998887732211110 0 111113445555432 122 2 11221 245688888999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..... +...+.++.+++.|+.+...+ +.....+.+.+. ... ++.+.+..+.| |
T Consensus 84 v~vh~~~~-------------~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~----~~~---~d~i~~~~~~~--g 139 (211)
T cd00429 84 ITFHAEAT-------------DHLHRTIQLIKELGMKAGVAL--NPGTPVEVLEPY----LDE---VDLVLVMSVNP--G 139 (211)
T ss_pred EEECccch-------------hhHHHHHHHHHHCCCeEEEEe--cCCCCHHHHHHH----Hhh---CCEEEEEEECC--C
Confidence 86633221 233455777788887655432 222222222222 221 45566655433 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC----CcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp----~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
+.-. ..+. ...+.+...|.+.+ +..+-+.+ +++++.-.....+|++.++.|..+.
T Consensus 140 ~tg~---~~~~-~~~~~i~~~~~~~~~~~~~~pi~v~G---GI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 140 FGGQ---KFIP-EVLEKIRKLRELIPENNLNLLIEVDG---GINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred CCCc---ccCH-HHHHHHHHHHHHHHhcCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEECHHHh
Confidence 2211 1122 22333444444433 21121222 3444444556679999998886443
No 470
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.74 E-value=1.1e+02 Score=27.85 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhcCcE-EEEecCCC--CHHH----HHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGME-VCCTLGML--EKHQ----AIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~g~~-i~~t~g~l--~~e~----l~~Lk~a 193 (386)
++.+.+.+.++.+.+.|+. ++.+ |+ .-|- .....+-+.++.+|+.|+. +.+++|.+ +.+. ++..++.
T Consensus 38 ~~~~~l~eki~la~~~~V~-v~~G-Gt---l~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 38 IDRDIVKEKIEMYKDYGIK-VYPG-GT---LFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred ccHHHHHHHHHHHHHcCCe-EeCC-cc---HHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 4555566666667778873 4333 21 1121 1224566777788899988 68888863 4443 3445566
Q ss_pred ccCeee-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 016605 194 GLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 234 (386)
Q Consensus 194 G~~~v~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~ 234 (386)
|+...+ ++.+.. .-....+.+++++-++..-++|-.
T Consensus 113 g~~v~~EvG~K~~-----~~~~~~~~~~~i~~~~~~LeAGA~ 149 (237)
T TIGR03849 113 GFMVLSEVGKKSP-----EKDSELTPDDRIKLINKDLEAGAD 149 (237)
T ss_pred CCeEeccccccCC-----cccccCCHHHHHHHHHHHHHCCCc
Confidence 766554 344332 001124688999999888999975
No 471
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=64.60 E-value=1.4e+02 Score=28.96 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCC--Ch--hhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCee
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RK--TNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~g--e~--~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
|-+...++...+.|++.+.+.-+|..... .. ..++...++++.+|+.+ ..+ +.+..-.-..+..+.+.|+|.+
T Consensus 189 d~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pi-i~f~~ga~~~l~~m~~~g~d~l 267 (352)
T COG0407 189 DAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPV-IHFCKGAGHLLEDMAKTGFDVL 267 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcE-EEECCCcHHHHHHHHhcCCcEE
Confidence 33444555566789988887654422111 11 12255666777777543 333 2233335677888999999988
Q ss_pred ec
Q 016605 199 NH 200 (386)
Q Consensus 199 ~i 200 (386)
++
T Consensus 268 ~v 269 (352)
T COG0407 268 GV 269 (352)
T ss_pred ee
Confidence 85
No 472
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=64.59 E-value=1.3e+02 Score=28.34 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--------C---------CCCHHHHHHH-HHh
Q 016605 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--------G---------MLEKHQAIEL-KKA 193 (386)
Q Consensus 132 ~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--------g---------~l~~e~l~~L-k~a 193 (386)
..+.+.|++.|-+-++. .++ ..+.+...+.++.++..|+.+.... + .-+++.++++ ++-
T Consensus 89 ~~ai~~GFtSVM~DgS~-lp~--eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 89 RQKVHAGVRSAMIDGSH-FPF--AQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHcCCCEEeecCCC-CCH--HHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH
Confidence 45566799998775542 221 2455666666776776665432111 1 1244555555 567
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGL 253 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~ 253 (386)
|+|.+.+++-+.--.|+. .+.-+++ +++.|+.. .++++ ++-|- |-.++++.+.
T Consensus 166 gvD~LAvaiGt~HG~yk~-~p~Ldf~-~L~~I~~~--~~iPL---VlHGgSG~~~e~~~~a 219 (282)
T TIGR01858 166 GVDSLAVAIGTAHGLYKK-TPKLDFD-RLAEIREV--VDVPL---VLHGASDVPDEDVRRT 219 (282)
T ss_pred CcCEEecccCccccCcCC-CCccCHH-HHHHHHHH--hCCCe---EEecCCCCCHHHHHHH
Confidence 999999887665333332 2233554 23333322 25544 33333 5555555443
No 473
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.49 E-value=43 Score=30.46 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.++.++. +.+.+.|+.++.++.-...-.....+++-+.++.+ ..++++...-|..+.+.++.+.+.|++.+.++
T Consensus 148 ~~~~~~~---~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 148 LNLFSFV---RQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCHHHHH---HHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 4555555 45556788888765432211111123433333322 23677888889999999999999999998875
No 474
>PRK09389 (R)-citramalate synthase; Provisional
Probab=64.43 E-value=1.2e+02 Score=30.88 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=54.8
Q ss_pred CCHHHHHHHHH----HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~----~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG 194 (386)
++.+|+++.+. .+++.|. .+.+... . .. ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+.=
T Consensus 107 ~s~~e~l~~~~~~v~~ak~~g~-~v~~~~e-d--~~-r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l 181 (488)
T PRK09389 107 KTREEVLETAVEAVEYAKDHGL-IVELSGE-D--AS-RADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRL 181 (488)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-EEEEEEe-e--CC-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence 45666655444 3445564 3433221 1 11 23457777887777766544 45567877766665553321
Q ss_pred cCe--eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 195 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 195 ~~~--v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
.+. +.+++ +...++.-.+.....+.++|...--+.+.|+||
T Consensus 182 ~~~~~v~l~~----------H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE 224 (488)
T PRK09389 182 SELVKGPVSI----------HCHNDFGLAVANTLAALAAGADQVHVTINGIGE 224 (488)
T ss_pred HhhcCCeEEE----------EecCCccHHHHHHHHHHHcCCCEEEEEcccccc
Confidence 111 22222 212233333344445556787644445667765
No 475
>PRK03906 mannonate dehydratase; Provisional
Probab=64.34 E-value=15 Score=36.05 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCHHHHHHHHH----hccCeeecccCchHHHHhhhCCC-C----CHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHH
Q 016605 182 LEKHQAIELKK----AGLTAYNHNLDTSREFYSKIITT-R----SYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRV 251 (386)
Q Consensus 182 l~~e~l~~Lk~----aG~~~v~i~le~~~~~~~~i~~~-~----s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~ 251 (386)
-+.+.+.++|+ +|++.-- +|+.+ +++.|..+ . -.+.+.+.|+++-++||+ ++.++|..+.-+..++.
T Consensus 40 W~~~~i~~~~~~ie~~Gl~~~v--vEs~p-v~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnfmpv~dwtrt~l~ 116 (385)
T PRK03906 40 WPVEEILARKAEIEAAGLEWSV--VESVP-VHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNFMPVFDWTRTDLA 116 (385)
T ss_pred CCHHHHHHHHHHHHHcCCeEEE--EeCCC-ccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecCcccccccCcccc
Confidence 46666766654 5754333 35552 23444332 2 356777889999999998 77788765554444443
No 476
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=64.33 E-value=1.4e+02 Score=28.64 Aligned_cols=165 Identities=19% Similarity=0.149 Sum_probs=73.8
Q ss_pred HHHHHHHHhccCeeecccCchHHHHhhhCCCCC-HHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHHHHHHHhcCCC
Q 016605 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRS-YDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVGLLHTLATLPT 262 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s-~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~ 262 (386)
+.++.+.++|+|.+.+++-..+.. .... +.+ .+.+.+.++.+++. .+++.+-+-. +..++.++++.+.+.|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~~~-~~~~-g~~~~~~~~eiv~~v~~~~~iPv~vKl~p----~~~~~~~~a~~l~~~G- 188 (325)
T cd04739 116 DYARQIEEAGADALELNIYALPTD-PDIS-GAEVEQRYLDILRAVKSAVTIPVAVKLSP----FFSALAHMAKQLDAAG- 188 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCC-CCcc-cchHHHHHHHHHHHHHhccCCCEEEEcCC----CccCHHHHHHHHHHcC-
Confidence 344555556667666655432100 0111 112 23344555665554 4444333221 2336777777777776
Q ss_pred CCCeEeeeeeeecCCCCCCC--------CC-CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc
Q 016605 263 HPESVPINALLAVKGTPLQD--------QK-PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF 333 (386)
Q Consensus 263 ~~~~v~~~~f~P~~gT~l~~--------~~-~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~ 333 (386)
++.+.+..-.+.+.-.+.. .+ +......++++...+... + +.-+..|-+. ..+.....+.+||+.+.
T Consensus 189 -adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-~-ipIig~GGI~-s~~Da~e~l~aGA~~Vq 264 (325)
T cd04739 189 -ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-K-ASLAASGGVH-DAEDVVKYLLAGADVVM 264 (325)
T ss_pred -CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-C-CCEEEECCCC-CHHHHHHHHHcCCCeeE
Confidence 6666554422211110000 00 011112233333333222 2 1112222222 23334667789999997
Q ss_pred cCCccccCCC----CChhHHHHHHHHcCCCc
Q 016605 334 TGEKLLTTPN----NDFDADQLMFKVLGLTP 360 (386)
Q Consensus 334 ~g~~~~t~~~----~~~~~~~~~i~~~G~~p 360 (386)
.+..+....- .=.+++.+++++.||.-
T Consensus 265 v~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~ 295 (325)
T cd04739 265 TTSALLRHGPDYIGTLLAGLEAWMEEHGYES 295 (325)
T ss_pred EehhhhhcCchHHHHHHHHHHHHHHHcCCCC
Confidence 6643332111 12355667788888854
No 477
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.32 E-value=35 Score=32.19 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC------------------CCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD------------------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLE 183 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~------------------~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~ 183 (386)
+.+++.+.++.+.+.|++.+.+...... ..| +...+..++.++.+++ .++++..+.|..+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~ 245 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSG-PAIKPIALRMVYQVYQAVDIPIIGMGGISS 245 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCC-cCcccccHHHHHHHHHhCCCCEEEECCCCC
Confidence 4567888888888889887765321000 001 1112335666777764 4778888888888
Q ss_pred HHHHHHHHHhccCeeecc
Q 016605 184 KHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.++..+|+|.|.++
T Consensus 246 ~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 246 AEDAIEFIMAGASAVQVG 263 (301)
T ss_pred HHHHHHHHHcCCCceeEc
Confidence 888888888999988874
No 478
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=64.27 E-value=1.3e+02 Score=28.23 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=61.5
Q ss_pred CCHHHHHH----HHHHHHHcCCcEEEEecccCCCCCC--hhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQ----AAQKAKEAGSTRFCMGAAWRDTIGR--KTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~----~~~~~~~~G~~~v~l~~g~~~~~ge--~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~ 192 (386)
++.+++++ .++.+++.|. .+.+.... .+. ....+++.++++.+.+.|.. ++-|.|..+++.+..+.+
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d---~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~ 183 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLED---WSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYIS 183 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEe---CCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 45555544 4455566775 34332211 111 13457889999888887765 345788888777766644
Q ss_pred h---ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 193 A---GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 193 a---G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
. .+..+.+++ +...++--.+...-.+.++|...--+.+.|+|+
T Consensus 184 ~l~~~~~~~~i~~----------H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe 229 (280)
T cd07945 184 DMVKRYPNLHFDF----------HAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE 229 (280)
T ss_pred HHHhhCCCCeEEE----------EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc
Confidence 3 121122222 222234444455556678898755556777765
No 479
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=64.06 E-value=93 Score=28.54 Aligned_cols=122 Identities=20% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEE-E--EecccCCCCCChhhHHHHHHHHHHHhhc---CcEEE-EecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRF-C--MGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC-CTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v-~--l~~g~~~~~ge~~~~~~l~~~i~~ik~~---g~~i~-~t~g~l~~e~l~~Lk~aG 194 (386)
.+.+|.+..++.+++.+...+ - +.+. +..+++++.+.+++.++. |+.++ ... -+....++|.++|
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d------~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~--dd~~~ar~l~~~G 144 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGD------DKTLLPDPIETLKAAEILVKEGFTVLPYCT--DDPVLAKRLEDAG 144 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecC------ccccccCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHcC
Confidence 478899999998888654433 2 2321 235667888888888765 88865 333 3688999999999
Q ss_pred cCeeec--ccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 195 LTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 195 ~~~v~i--~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
++.|.. +.=+. . .+-.+ . +.|+.+++. +++ +|++= -.+.+|....++ +| .+.+.+.
T Consensus 145 ~~~vmPlg~pIGs-----g-~Gi~~-~---~~I~~I~e~~~vp----VI~egGI~tpeda~~Ame----lG--AdgVlV~ 204 (248)
T cd04728 145 CAAVMPLGSPIGS-----G-QGLLN-P---YNLRIIIERADVP----VIVDAGIGTPSDAAQAME----LG--ADAVLLN 204 (248)
T ss_pred CCEeCCCCcCCCC-----C-CCCCC-H---HHHHHHHHhCCCc----EEEeCCCCCHHHHHHHHH----cC--CCEEEEC
Confidence 999854 21111 0 01112 3 334444543 333 44443 347777766654 65 5666554
Q ss_pred e
Q 016605 271 A 271 (386)
Q Consensus 271 ~ 271 (386)
.
T Consensus 205 S 205 (248)
T cd04728 205 T 205 (248)
T ss_pred h
Confidence 4
No 480
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=64.04 E-value=1.3e+02 Score=28.32 Aligned_cols=161 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
+.++.+.++|++.+.+++-.. ....+.... .++.+...+.++.+++. +..-+++=+.-+.+++.++++.+.+.|
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~~~~~~~~~~a~~~~~~G 193 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLTPNITDIREIARAAKEGG 193 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECCCCchhHHHHHHHHHHcC
Q ss_pred CCCCeEeeeeeeecC----------------CCCCCCCCCCCHHHH-HHHHHHHHHhCCCcceeecCcccccChhHHHhh
Q 016605 262 THPESVPINALLAVK----------------GTPLQDQKPVEIWEM-IRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 324 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~----------------gT~l~~~~~~s~~e~-~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~ 324 (386)
++.+.+..-.+.. .|.......+..... ++++...+..++..+.-+..|=+.-..+. ...
T Consensus 194 --adgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da-~~~ 270 (299)
T cd02940 194 --ADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDA-AEF 270 (299)
T ss_pred --CCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHH-HHH
Q ss_pred hhcCccccccCCccccCCCCChhHHHH
Q 016605 325 FLAGANSIFTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 325 l~~Gan~~~~g~~~~t~~~~~~~~~~~ 351 (386)
+.+||+.++.+.......-.-+.++.+
T Consensus 271 l~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 271 LLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred HHcCCChheEceeecccCCcHHHHHhh
No 481
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=64.00 E-value=1.3e+02 Score=28.24 Aligned_cols=189 Identities=12% Similarity=0.090 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcC-cEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG-MEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g-~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.+-+...++.+.+.+..-+...+-+...+ ...++.+...++.+. +.. +++.++... .+.+.++...++|+++|
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKY--MGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhc--cCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4567777777777777754443322111111 012566777777654 456 787666432 36788888889999998
Q ss_pred ecccCch--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE--eEEeec-----C--CCHHHHHHHHHHHhcCCCCCCeE
Q 016605 199 NHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGL-----G--EAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 199 ~i~le~~--~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~--~~i~Gl-----g--et~ed~~~~l~~l~~l~~~~~~v 267 (386)
.+.-... ++ ..+...+..+.+++.|+.+.. +.+-|- | .+..+..+..+++++.+ ++.+
T Consensus 102 mid~s~l~~~e---------ni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tg--vD~L 170 (282)
T TIGR01859 102 MIDGSHLPFEE---------NLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETG--VDYL 170 (282)
T ss_pred EECCCCCCHHH---------HHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHC--cCEE
Confidence 8743332 12 123344667777888876543 221110 0 11124455556666565 6665
Q ss_pred ee--eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc
Q 016605 268 PI--NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF 333 (386)
Q Consensus 268 ~~--~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~ 333 (386)
.+ ....+ +. ...+....+.+.++.+... .| .+- .|--++..+.-...+.+|++.+=
T Consensus 171 avs~Gt~hg---~~-~~~~~l~~e~L~~i~~~~~--iP--lv~--hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 171 AAAIGTSHG---KY-KGEPGLDFERLKEIKELTN--IP--LVL--HGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred eeccCcccc---cc-CCCCccCHHHHHHHHHHhC--CC--EEE--ECCCCCCHHHHHHHHHcCCCEEE
Confidence 53 22221 11 1124445444332222111 12 111 12123444444567888999883
No 482
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=63.89 E-value=53 Score=30.57 Aligned_cols=110 Identities=22% Similarity=0.210 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHHHhc---cCe
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTA 197 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk~aG---~~~ 197 (386)
.+.+.+.++.+++.|. .+.+..- ....+.....+++.++++.+.+.|.. +.-|.|..+++.+..+.+.= +..
T Consensus 118 ~~~~~~~i~~ak~~G~-~v~~~~~-~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 195 (273)
T cd07941 118 LAMIRDSVAYLKSHGR-EVIFDAE-HFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG 195 (273)
T ss_pred HHHHHHHHHHHHHcCC-eEEEeEE-eccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3444455556667776 3433211 00011123457788888888776655 34567888877776654331 122
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
+.+++ +...++--.+...-.+.++|...--+.+.|+|+
T Consensus 196 ~~l~~----------H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe 233 (273)
T cd07941 196 VPLGI----------HAHNDSGLAVANSLAAVEAGATQVQGTINGYGE 233 (273)
T ss_pred CeeEE----------EecCCCCcHHHHHHHHHHcCCCEEEEecccccc
Confidence 33322 111122222333334456788755556677765
No 483
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=63.85 E-value=1.3e+02 Score=28.29 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe--------cC---------CCCHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT--------LG---------MLEKH 185 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t--------~g---------~l~~e 185 (386)
+.+.+.+ +.+.|++.|-+-|... ++ ..+.....+.++.++..|+.+... .+ .-+++
T Consensus 86 ~~e~i~~----ai~~GFtSVM~DgS~l-p~--eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~pe 158 (286)
T PRK12738 86 SLDDIRR----KVHAGVRSAMIDGSHF-PF--AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQ 158 (286)
T ss_pred CHHHHHH----HHHcCCCeEeecCCCC-CH--HHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHH
Confidence 5555554 4567999987755432 21 245566667777777666543211 11 22566
Q ss_pred HHHHHH-HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHH
Q 016605 186 QAIELK-KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGL 253 (386)
Q Consensus 186 ~l~~Lk-~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~ 253 (386)
.++++. +-|+|.+.+++-+.--.|+. .|.-+++ +++.|+.. .++++ ++-|- |-..+++.+.
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd-~l~~I~~~--~~vPL---VLHGgSG~~~e~~~ka 221 (286)
T PRK12738 159 EAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQ-RLAEIREV--VDVPL---VLHGASDVPDEFVRRT 221 (286)
T ss_pred HHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHHHHH
Confidence 666665 56999999887665333332 2233554 23333322 25554 33343 5555555433
No 484
>PHA02031 putative DnaG-like primase
Probab=63.50 E-value=31 Score=31.95 Aligned_cols=82 Identities=17% Similarity=-0.008 Sum_probs=55.2
Q ss_pred HHHHHHHHh--hcCcE-EEEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 161 ILEYVKDIR--DMGME-VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 161 l~~~i~~ik--~~g~~-i~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+++.|+.-. ..|+. ...+.|+ ++++.++.|++.+.+.|.+-+|+-.. ..+-..++++.+...|+.+.
T Consensus 168 YmDVI~l~~a~~aG~~naVA~LGTALT~~q~~~L~r~~~~~Vil~fDgD~A---------G~~Aa~ra~~~l~~~~~~v~ 238 (266)
T PHA02031 168 YLSALKVRWACNKPEVFAVALLGTRLRDRLAAILLQQTCPRVLIFLDGDPA---------GVDGSAGAMRRLRPLLIEGQ 238 (266)
T ss_pred cHHHHHHHHHHhcCcceEEECCcccCCHHHHHHHHhcCCCCEEEEeCCCHH---------HHHHHHHHHHHHHHcCCceE
Confidence 455554211 25776 5567787 89999999999888888888776311 23344677888888888766
Q ss_pred EeEEeecCCCHHHHHH
Q 016605 237 SGGIIGLGEAEEDRVG 252 (386)
Q Consensus 237 ~~~i~Glget~ed~~~ 252 (386)
+..+. -|.+++|+..
T Consensus 239 vv~lP-~g~DPDd~ir 253 (266)
T PHA02031 239 VIITP-DGFDPKDLER 253 (266)
T ss_pred EEECC-CCCChHHHHH
Confidence 54443 2788888764
No 485
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=63.45 E-value=90 Score=31.87 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHH
Q 016605 158 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIE 189 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~ 189 (386)
.+++.++++.+.+.|.. ++-|.|..+++.+..
T Consensus 145 ~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~ 179 (494)
T TIGR00973 145 IPFLARIVEAAINAGATTINIPDTVGYALPAEYGN 179 (494)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHH
Confidence 34455555554444332 223445444444433
No 486
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=63.29 E-value=58 Score=28.11 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc---cCCCCCChhhHHHHHHHHHHH----hhcCcEEEEec--CCCC------HHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAA---WRDTIGRKTNFNQILEYVKDI----RDMGMEVCCTL--GMLE------KHQA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g---~~~~~ge~~~~~~l~~~i~~i----k~~g~~i~~t~--g~l~------~e~l 187 (386)
..+.+.+.++.+...|++.+.+..| ..........++.+.+.++.+ ++.|+.+++.+ +... ++..
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHH
Confidence 4778888888888999999888755 222222223445555555444 45588765543 2221 7778
Q ss_pred HHHHHhccCeeecccCch
Q 016605 188 IELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 188 ~~Lk~aG~~~v~i~le~~ 205 (386)
+.+++.+-+.+.+.+|+.
T Consensus 149 ~~l~~~~~~~~~i~~D~~ 166 (213)
T PF01261_consen 149 RLLEEVDSPNVGICFDTG 166 (213)
T ss_dssp HHHHHHTTTTEEEEEEHH
T ss_pred HHHhhcCCCcceEEEehH
Confidence 888888877788877775
No 487
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.25 E-value=53 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHH
Q 016605 158 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIEL 190 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~L 190 (386)
.+++.+.++.+.+.|.. +.-|.|.++++.+..+
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~ 178 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDR 178 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHH
Confidence 35555555555555443 2224555555544443
No 488
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=63.20 E-value=52 Score=31.82 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHcC-CcEEEEecccCCCC------CChhh--HHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDTI------GRKTN--FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK 191 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~------ge~~~--~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk 191 (386)
.+.+|.++.++.+.+.| ++-+.+.+|..... -.+.. .....+.++.+|+ .++++..+.+..+.+.++.+.
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l 304 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQAL 304 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHH
Confidence 45778888888888887 77777755432110 00000 1223566666664 366676666667878777777
Q ss_pred Hhc-cCeeecccCch--HHHHhhh
Q 016605 192 KAG-LTAYNHNLDTS--REFYSKI 212 (386)
Q Consensus 192 ~aG-~~~v~i~le~~--~~~~~~i 212 (386)
+.| +|.|.++=-.+ |+...++
T Consensus 305 ~~~~~D~V~~gR~~ladP~l~~k~ 328 (343)
T cd04734 305 AAGHADMVGMTRAHIADPHLVAKA 328 (343)
T ss_pred HcCCCCeeeecHHhHhCccHHHHH
Confidence 654 88888764443 4444444
No 489
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=62.88 E-value=1.2e+02 Score=27.43 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcE--EEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GME--VCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~--i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+.+.+...+.. ++.|.+.+.....+|. ...+..++-++++++. +.+ +.+. |-++.+.+..++++|+
T Consensus 121 T~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ-~fi~~~l~KI~~l~~~~~~~~~~~~IeVD-GGI~~eti~~l~~aGa 193 (223)
T PRK08745 121 TPVDILDWVLPE-----LDLVLVMSVNPGFGGQ-AFIPSALDKLRAIRKKIDALGKPIRLEID-GGVKADNIGAIAAAGA 193 (223)
T ss_pred CCHHHHHHHHhh-----cCEEEEEEECCCCCCc-cccHHHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCC
Confidence 355555544332 4555554433223343 3455666666665532 433 5554 4467899999999999
Q ss_pred Ceeecc
Q 016605 196 TAYNHN 201 (386)
Q Consensus 196 ~~v~i~ 201 (386)
|.+-.|
T Consensus 194 Di~V~G 199 (223)
T PRK08745 194 DTFVAG 199 (223)
T ss_pred CEEEEC
Confidence 887765
No 490
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=62.78 E-value=1.4e+02 Score=28.34 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCC-CCCChhhH-----HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNF-----NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~-~~ge~~~~-----~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++...+.|+.-+.+...+.. ..-.|..+ +++.++++.+++ ...+.-..|. +...++.+++.|++.+++
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~cG~-~~~~l~~~~~~g~d~~~~ 250 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-CPTILHICGN-TTPILEYIAQCGFDGISV 250 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEECCC-ChhHHHHHHHcCCCeecc
Confidence 34445556778887766432211 11123333 334455555555 2223323454 356789999999988665
No 491
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=62.60 E-value=1.4e+02 Score=28.09 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.|.+...++.+.+.+.. +.++.+. ... .-..++.+..+++.+. +..++++++... -+.+.+++-.++|+++|-
T Consensus 24 ~n~e~~~avi~AAee~~sP-vIlq~s~-~~~-~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSP-VILAGTP-GTF-KHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEeCc-cHH-hhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEe
Confidence 4667777778887777764 4444321 100 1123566777777664 567787777654 478889999999999888
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE--eEEeec-CC----C----HHHHHHHHHHHhcCCCCCCeEe
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS--GGIIGL-GE----A----EEDRVGLLHTLATLPTHPESVP 268 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~--~~i~Gl-ge----t----~ed~~~~l~~l~~l~~~~~~v~ 268 (386)
++--.++ | ..+.+...+..+.++..|+.|.. +.+-|. +. . .-+..+..+|+++-| +|.+-
T Consensus 101 ~DgS~lp--~-----eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg--vD~LA 171 (282)
T TIGR01858 101 IDGSHFP--F-----AQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATG--VDSLA 171 (282)
T ss_pred ecCCCCC--H-----HHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHC--cCEEe
Confidence 7533321 0 11344556788889999987654 444343 11 0 113356677777776 55544
Q ss_pred eeeeeecCCCCCC---CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 269 INALLAVKGTPLQ---DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 269 ~~~f~P~~gT~l~---~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+.. ||.-+ ..|.+..+.+.++-+ ..+ ..+-+ .|--++..+.-..+...|++-+
T Consensus 172 vai-----Gt~HG~yk~~p~Ldf~~L~~I~~----~~~-iPLVl-HGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 172 VAI-----GTAHGLYKKTPKLDFDRLAEIRE----VVD-VPLVL-HGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred ccc-----CccccCcCCCCccCHHHHHHHHH----HhC-CCeEE-ecCCCCCHHHHHHHHHcCCeEE
Confidence 433 43221 123455554333322 221 11111 1222334444466788898877
No 492
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.36 E-value=50 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHH
Q 016605 157 NFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIEL 190 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~L 190 (386)
..+++.++++.+.+.|.. ++-|.|..+++.+..+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~l 171 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGIMTPEDVAEL 171 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHH
Confidence 346666666666655544 3345666665554444
No 493
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.35 E-value=46 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 157 NFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
..+.+.+.++.+++.+ +.+..+ |-++.+.+..+.+.|+|.+++|-
T Consensus 229 ~~e~vk~av~~~~~~~~~v~ieaS-GGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 229 PVWQTQEAVQRRDARAPTVLLESS-GGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHHHhccCCCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 3466666666655433 234444 55799999999999999999864
No 494
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.30 E-value=48 Score=31.11 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec---ccC-------C--------CCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCH
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGA---AWR-------D--------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 184 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~---g~~-------~--------~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~ 184 (386)
.+++.+.++.+.+.|++.+.+.. +.. + ..| +...+..++.++.+++ .++++..+.|..+.
T Consensus 165 ~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 165 VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG-PAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC-cccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 35677777778888988776531 100 0 011 1123345677777764 47788888888888
Q ss_pred HHHHHHHHhccCeeecc
Q 016605 185 HQAIELKKAGLTAYNHN 201 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~ 201 (386)
+.+.++.++|+|.|.++
T Consensus 244 ~da~~~l~~GAd~V~ig 260 (296)
T cd04740 244 EDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 88888888999999875
No 495
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=62.27 E-value=1.4e+02 Score=28.09 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCC----------------CHHHHHHHH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML----------------EKHQAIELK 191 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l----------------~~e~l~~Lk 191 (386)
.+.++.+.+.|++.|-+-+...+. ..+.+...+.++.++..|+.+....|.+ .++..+..+
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~l~~---eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~ 166 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDASHSPF---EENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE 166 (286)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHH
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 255 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 255 (386)
+-|+|.+.+++=+.--.|+. .+.-+++..-+.-+.. ++++ ++-|- |-.++++.+.+.
T Consensus 167 ~TgvD~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~~---~vPL---VLHGgSG~~~e~~~~ai~ 224 (286)
T PRK08610 167 KTGIDALAPALGSVHGPYKG-EPKLGFKEMEEIGLST---GLPL---VLHGGTGIPTKDIQKAIP 224 (286)
T ss_pred HHCCCEEEeeccccccccCC-CCCCCHHHHHHHHHHH---CCCE---EEeCCCCCCHHHHHHHHH
No 496
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.21 E-value=87 Score=25.65 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCC------HHHHHHHHHhc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLE------KHQAIELKKAG 194 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~------~e~l~~Lk~aG 194 (386)
++|++++.+.+ .+..-+.+++ .-....+.+.++++.+++.++. ..+--|.+. ++..++|+++|
T Consensus 38 ~~e~~v~aa~~---~~adiVglS~------L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~G 108 (128)
T cd02072 38 PQEEFIDAAIE---TDADAILVSS------LYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMG 108 (128)
T ss_pred CHHHHHHHHHH---cCCCEEEEec------cccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcC
Q ss_pred cCeeecccCchHHHHhhhCCCCCHHHHHHHHH
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLK 226 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~ 226 (386)
++.+.- ++.+.++.++.++
T Consensus 109 v~~vf~-------------pgt~~~~i~~~l~ 127 (128)
T cd02072 109 FDRVFA-------------PGTPPEEAIADLK 127 (128)
T ss_pred CCEEEC-------------cCCCHHHHHHHHh
No 497
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.10 E-value=1.1e+02 Score=28.17 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEE-E--EecccCCCCCChhhHHHHHHHHHHHhhc---CcEEE-EecCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRF-C--MGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC-CTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v-~--l~~g~~~~~ge~~~~~~l~~~i~~ik~~---g~~i~-~t~g~l~~e~l~~Lk~aG 194 (386)
.+.+|.+..++.+++.+...+ - +.+. +...++++.+.+++.++. |+.++ ... -+....++|.++|
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d------~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~--~d~~~ak~l~~~G 144 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGD------DKTLLPDPIETLKAAEILVKEGFVVLPYCT--DDPVLAKRLEEAG 144 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecC------CCCCCcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHcC
Confidence 478999999998888654333 2 2331 224567777888877765 88865 333 3688999999999
Q ss_pred cCeeec--ccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 195 LTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 195 ~~~v~i--~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
++.|.. ++=+. . .+-.++ +.++.+++. +++ +|++= -.+.+|....++ +| .+.+-+.
T Consensus 145 ~~~vmPlg~pIGs-----g-~gi~~~----~~i~~i~e~~~vp----VIveaGI~tpeda~~Ame----lG--AdgVlV~ 204 (250)
T PRK00208 145 CAAVMPLGAPIGS-----G-LGLLNP----YNLRIIIEQADVP----VIVDAGIGTPSDAAQAME----LG--ADAVLLN 204 (250)
T ss_pred CCEeCCCCcCCCC-----C-CCCCCH----HHHHHHHHhcCCe----EEEeCCCCCHHHHHHHHH----cC--CCEEEEC
Confidence 999853 21111 0 011122 224555553 443 44443 347777776654 65 6666654
Q ss_pred e
Q 016605 271 A 271 (386)
Q Consensus 271 ~ 271 (386)
.
T Consensus 205 S 205 (250)
T PRK00208 205 T 205 (250)
T ss_pred h
Confidence 4
No 498
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=62.02 E-value=38 Score=33.33 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC-CCCHHHHHHHHHhccCeeecccCch-H-
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-R- 206 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~-~- 206 (386)
.++.+.+.|++-|++-+. .| +-.+-+++|+.+|+...++.+-.| .++.+..+.|..+|+|.+-+++-+. -
T Consensus 255 rl~ll~~aGvdvviLDSS----qG---nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiC 327 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS----QG---NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSIC 327 (503)
T ss_pred HHHHhhhcCCcEEEEecC----CC---cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCcee
Confidence 344566789988888442 13 235678999999976444333333 3799999999999999999887553 1
Q ss_pred HHHhhh-CCCCCHHHHHHHHHHHHHcCCeeeEe
Q 016605 207 EFYSKI-ITTRSYDERLETLKHVREAGINVCSG 238 (386)
Q Consensus 207 ~~~~~i-~~~~s~~~~l~~i~~a~~~Gi~v~~~ 238 (386)
-+.+.+ +.....-.+.+..+.++..|+++-++
T Consensus 328 iTqevma~GrpQ~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 328 ITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred eeceeeeccCCcccchhhHHHHHHhcCCceeec
Confidence 111111 11112445678889999999986553
No 499
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=61.89 E-value=1.8e+02 Score=29.31 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.++.++. +.+ ..|...+.+.+......|. ++++ +.+++ ..+++....-.+++-++.+-+.+|.|.|.+
T Consensus 70 ~d~~~~a---~~y-~~gA~aiSVlTe~~~F~Gs---~~~l----~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLL 138 (454)
T PRK09427 70 FDPAEIA---RVY-KHYASAISVLTDEKYFQGS---FDFL----PIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILL 138 (454)
T ss_pred CCHHHHH---HHH-HcCCeEEEEecCcCcCCCC---HHHH----HHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhH
Confidence 3554444 444 6677667655532222232 2333 33442 356776666678999999999999999887
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
-...+ +.++..+-++.+++.|+.+=+. -.|.+|+...+ +.+ ++.++++.-..
T Consensus 139 I~~~L-----------~~~~l~~l~~~a~~lGl~~lvE-----vh~~~El~~al----~~~--a~iiGiNnRdL------ 190 (454)
T PRK09427 139 MLSVL-----------DDEQYRQLAAVAHSLNMGVLTE-----VSNEEELERAI----ALG--AKVIGINNRNL------ 190 (454)
T ss_pred HHHhC-----------CHHHHHHHHHHHHHcCCcEEEE-----ECCHHHHHHHH----hCC--CCEEEEeCCCC------
Confidence 44333 2234456678899999873221 23666766543 344 66778776432
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.. -..+.....++. -++|+..+.++-+ ++....+...+..|+|.++.|+.++
T Consensus 191 ~t-~~vd~~~~~~l~----~~ip~~~~~vseS--GI~t~~d~~~~~~~~davLiG~~lm 242 (454)
T PRK09427 191 RD-LSIDLNRTRELA----PLIPADVIVISES--GIYTHAQVRELSPFANGFLIGSSLM 242 (454)
T ss_pred cc-ceECHHHHHHHH----hhCCCCcEEEEeC--CCCCHHHHHHHHhcCCEEEECHHHc
Confidence 11 112334333332 3456655555522 2222233444567899998886544
No 500
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.86 E-value=54 Score=30.70 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhhcC----cEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 157 NFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g----~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
..+.+.+.++.+++.+ +.+..+ |-++.+.++.+.+.|+|.+++|-
T Consensus 212 ~~e~l~~~v~~l~~~~~~~~~~leaS-GGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 212 TPEEIREVIEALKREGLRERVKIEVS-GGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHHHHhcCcCCCEEEEEE-CCCCHHHHHHHHHcCCCEEEeCh
Confidence 3466777777666533 334444 44699999999999999999753
Done!