Query 016606
Match_columns 386
No_of_seqs 342 out of 1844
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02839 nudix hydrolase 100.0 6.8E-93 1.5E-97 701.9 34.7 349 37-386 22-372 (372)
2 KOG4313 Thiamine pyrophosphoki 100.0 2.2E-55 4.7E-60 409.7 18.3 280 93-383 11-299 (306)
3 cd03676 Nudix_hydrolase_3 Memb 100.0 8.3E-42 1.8E-46 310.8 21.1 178 185-364 1-180 (180)
4 cd02885 IPP_Isomerase Isopente 99.9 8.8E-25 1.9E-29 196.4 15.3 156 188-351 1-159 (165)
5 PRK03759 isopentenyl-diphospha 99.9 2.5E-24 5.3E-29 197.2 16.9 172 187-366 4-178 (184)
6 TIGR02150 IPP_isom_1 isopenten 99.9 9E-24 1.9E-28 189.1 16.7 151 191-351 1-153 (158)
7 PRK15393 NUDIX hydrolase YfcD; 99.9 1.7E-23 3.6E-28 191.4 17.4 162 187-364 8-169 (180)
8 PLN02552 isopentenyl-diphospha 99.9 1.5E-23 3.2E-28 200.7 17.8 171 187-361 21-225 (247)
9 PLN02791 Nudix hydrolase homol 99.9 2.4E-23 5.3E-28 224.5 17.8 162 187-351 2-169 (770)
10 cd04692 Nudix_Hydrolase_33 Mem 99.9 5.3E-22 1.2E-26 174.0 14.9 129 216-345 1-131 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.8 5.9E-20 1.3E-24 157.5 13.2 121 220-353 3-123 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.8 1.8E-19 3.9E-24 154.0 12.6 117 229-354 9-125 (127)
13 COG1443 Idi Isopentenyldiphosp 99.8 1.6E-19 3.5E-24 162.3 10.1 170 188-363 3-176 (185)
14 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 4.8E-16 1E-20 134.1 15.9 133 219-364 4-137 (137)
15 cd04682 Nudix_Hydrolase_23 Mem 99.7 5.7E-16 1.2E-20 131.7 12.1 102 232-341 12-114 (122)
16 cd03426 CoAse Coenzyme A pyrop 99.7 5.8E-16 1.2E-20 138.3 11.2 115 218-341 3-118 (157)
17 cd04664 Nudix_Hydrolase_7 Memb 99.7 1.2E-15 2.6E-20 130.5 11.9 117 219-343 3-120 (129)
18 PRK15472 nucleoside triphospha 99.6 2E-15 4.3E-20 131.6 12.0 105 231-341 14-125 (141)
19 PF00293 NUDIX: NUDIX domain; 99.6 4E-15 8.6E-20 125.9 11.1 109 232-345 14-123 (134)
20 cd04684 Nudix_Hydrolase_25 Con 99.6 1.6E-14 3.4E-19 122.2 13.4 105 232-342 11-118 (128)
21 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.9E-14 4.1E-19 121.3 13.5 105 232-343 11-116 (120)
22 cd04691 Nudix_Hydrolase_32 Mem 99.6 1.4E-14 3E-19 122.8 12.1 101 232-344 11-111 (117)
23 PRK09438 nudB dihydroneopterin 99.6 1.6E-14 3.5E-19 126.8 12.7 122 229-363 16-146 (148)
24 cd04679 Nudix_Hydrolase_20 Mem 99.6 2.9E-14 6.3E-19 121.3 13.1 107 229-343 11-117 (125)
25 cd04694 Nudix_Hydrolase_35 Mem 99.6 5.8E-14 1.3E-18 124.2 14.8 116 229-345 10-135 (143)
26 cd03673 Ap6A_hydrolase Diadeno 99.6 6.4E-14 1.4E-18 118.9 14.2 105 229-343 13-118 (131)
27 KOG0142 Isopentenyl pyrophosph 99.6 6.3E-15 1.4E-19 135.2 7.8 169 189-362 20-205 (225)
28 cd04700 DR1025_like DR1025 fro 99.6 4.9E-14 1.1E-18 123.7 13.2 110 229-349 22-132 (142)
29 cd03675 Nudix_Hydrolase_2 Cont 99.5 2.7E-13 5.9E-18 116.5 16.7 127 224-363 5-131 (134)
30 cd04680 Nudix_Hydrolase_21 Mem 99.5 5.6E-14 1.2E-18 117.9 11.8 100 229-342 9-109 (120)
31 cd04673 Nudix_Hydrolase_15 Mem 99.5 1.3E-13 2.9E-18 115.8 13.9 109 224-342 5-115 (122)
32 PRK15434 GDP-mannose mannosyl 99.5 1.5E-13 3.1E-18 123.9 14.5 108 229-341 26-137 (159)
33 cd04681 Nudix_Hydrolase_22 Mem 99.5 1E-13 2.2E-18 118.4 12.0 103 229-339 10-113 (130)
34 cd03430 GDPMH GDP-mannose glyc 99.5 2.1E-13 4.5E-18 120.2 14.2 113 223-341 16-132 (144)
35 cd04688 Nudix_Hydrolase_29 Mem 99.5 2.3E-13 4.9E-18 116.0 13.3 105 225-340 7-117 (126)
36 cd04677 Nudix_Hydrolase_18 Mem 99.5 1.2E-13 2.7E-18 117.8 10.9 105 229-343 16-124 (132)
37 cd04699 Nudix_Hydrolase_39 Mem 99.5 4E-13 8.6E-18 113.7 13.8 108 229-344 10-117 (129)
38 cd03671 Ap4A_hydrolase_plant_l 99.5 3E-13 6.6E-18 119.0 13.3 107 229-343 12-133 (147)
39 cd03428 Ap4A_hydrolase_human_l 99.5 3.3E-13 7.1E-18 115.1 13.1 107 225-343 10-117 (130)
40 cd03427 MTH1 MutT homolog-1 (M 99.5 4.1E-13 8.9E-18 115.7 13.6 100 232-341 12-111 (137)
41 cd04695 Nudix_Hydrolase_36 Mem 99.5 3.9E-13 8.5E-18 115.8 13.0 106 229-343 11-116 (131)
42 cd04678 Nudix_Hydrolase_19 Mem 99.5 4.5E-13 9.8E-18 114.4 12.8 105 229-341 11-117 (129)
43 cd04696 Nudix_Hydrolase_37 Mem 99.5 4.3E-13 9.2E-18 114.3 12.5 108 223-341 6-114 (125)
44 cd04689 Nudix_Hydrolase_30 Mem 99.5 7.9E-13 1.7E-17 112.5 13.8 98 232-338 12-111 (125)
45 cd03425 MutT_pyrophosphohydrol 99.5 7.2E-13 1.6E-17 110.4 12.0 108 221-340 2-109 (124)
46 cd04670 Nudix_Hydrolase_12 Mem 99.4 1.4E-12 3E-17 111.3 12.7 107 223-340 6-112 (127)
47 cd03429 NADH_pyrophosphatase N 99.4 1.1E-12 2.3E-17 113.6 11.5 99 229-341 9-107 (131)
48 cd03674 Nudix_Hydrolase_1 Memb 99.4 2.9E-12 6.3E-17 111.6 14.0 101 232-341 15-123 (138)
49 cd04687 Nudix_Hydrolase_28 Mem 99.4 3.8E-12 8.3E-17 108.8 13.9 103 232-341 12-121 (128)
50 cd04666 Nudix_Hydrolase_9 Memb 99.4 4.7E-12 1E-16 108.8 14.3 106 229-344 12-118 (122)
51 PRK10707 putative NUDIX hydrol 99.4 3E-12 6.4E-17 118.5 13.9 106 229-342 41-147 (190)
52 PRK00714 RNA pyrophosphohydrol 99.4 2.5E-12 5.4E-17 115.0 12.9 107 229-343 17-137 (156)
53 PRK10776 nucleoside triphospha 99.4 3E-12 6.4E-17 108.2 12.7 107 222-340 6-112 (129)
54 cd02883 Nudix_Hydrolase Nudix 99.4 3.2E-12 6.9E-17 105.3 12.5 104 229-341 9-112 (123)
55 cd04671 Nudix_Hydrolase_13 Mem 99.4 2E-12 4.3E-17 111.1 11.2 99 229-340 9-109 (123)
56 PLN02325 nudix hydrolase 99.4 4E-12 8.7E-17 112.2 13.3 104 232-341 20-125 (144)
57 cd04685 Nudix_Hydrolase_26 Mem 99.4 4.6E-12 1E-16 110.5 12.6 115 219-341 2-123 (133)
58 PRK10546 pyrimidine (deoxy)nuc 99.4 9.7E-12 2.1E-16 106.8 14.5 109 220-341 4-112 (135)
59 cd04676 Nudix_Hydrolase_17 Mem 99.4 5.3E-12 1.1E-16 106.2 11.1 102 229-341 11-117 (129)
60 cd04690 Nudix_Hydrolase_31 Mem 99.4 9.2E-12 2E-16 104.4 12.1 99 231-340 11-109 (118)
61 PRK11762 nudE adenosine nucleo 99.3 2.5E-11 5.3E-16 111.4 15.2 111 231-351 58-168 (185)
62 cd04672 Nudix_Hydrolase_14 Mem 99.3 1.4E-11 3E-16 104.8 12.3 106 224-342 7-113 (123)
63 cd03672 Dcp2p mRNA decapping e 99.3 1.4E-11 3E-16 109.1 12.5 105 226-344 8-114 (145)
64 PRK00241 nudC NADH pyrophospha 99.3 1.8E-11 4E-16 118.2 14.0 96 232-341 143-238 (256)
65 TIGR00586 mutt mutator mutT pr 99.3 2.5E-11 5.5E-16 102.8 12.9 108 222-341 6-113 (128)
66 cd04667 Nudix_Hydrolase_10 Mem 99.3 2.4E-11 5.1E-16 101.7 12.0 93 232-343 11-103 (112)
67 cd04669 Nudix_Hydrolase_11 Mem 99.3 2.2E-11 4.8E-16 103.8 11.3 98 229-341 9-114 (121)
68 cd04661 MRP_L46 Mitochondrial 99.3 2E-11 4.3E-16 105.9 10.7 107 231-343 12-122 (132)
69 PRK10729 nudF ADP-ribose pyrop 99.3 7.3E-11 1.6E-15 110.3 14.9 108 248-364 82-193 (202)
70 PLN02709 nudix hydrolase 99.3 3.1E-11 6.8E-16 114.1 12.4 104 230-341 49-155 (222)
71 cd04686 Nudix_Hydrolase_27 Mem 99.3 7.9E-11 1.7E-15 101.8 13.0 108 224-341 5-119 (131)
72 TIGR00052 nudix-type nucleosid 99.3 7.4E-11 1.6E-15 108.7 13.2 105 246-359 75-182 (185)
73 PRK08999 hypothetical protein; 99.2 6.8E-11 1.5E-15 116.2 12.5 133 220-370 5-139 (312)
74 cd04511 Nudix_Hydrolase_4 Memb 99.2 1.5E-10 3.3E-15 99.6 12.5 94 232-339 24-117 (130)
75 COG1051 ADP-ribose pyrophospha 99.2 1.2E-10 2.7E-15 103.3 11.9 112 220-343 11-124 (145)
76 cd04662 Nudix_Hydrolase_5 Memb 99.2 2.1E-10 4.5E-15 99.8 11.3 105 225-335 8-126 (126)
77 PRK05379 bifunctional nicotina 99.1 8.3E-10 1.8E-14 110.7 14.9 106 232-341 214-322 (340)
78 PRK15009 GDP-mannose pyrophosp 99.1 1.2E-09 2.7E-14 101.2 14.2 108 249-366 80-190 (191)
79 TIGR02705 nudix_YtkD nucleosid 99.1 4.9E-09 1.1E-13 94.4 17.2 146 195-365 5-155 (156)
80 PLN03143 nudix hydrolase; Prov 99.0 1.8E-08 3.9E-13 99.1 18.4 132 229-367 140-288 (291)
81 COG2816 NPY1 NTP pyrophosphohy 99.0 6.8E-10 1.5E-14 107.7 6.0 97 233-344 156-253 (279)
82 KOG3069 Peroxisomal NUDIX hydr 98.9 4.2E-09 9.2E-14 99.4 9.6 116 220-341 46-163 (246)
83 cd04665 Nudix_Hydrolase_8 Memb 98.9 1.5E-08 3.3E-13 87.0 11.5 91 233-338 12-102 (118)
84 COG0494 MutT NTP pyrophosphohy 98.9 1.4E-08 3E-13 84.9 11.0 106 232-343 24-136 (161)
85 cd04663 Nudix_Hydrolase_6 Memb 98.9 2.7E-08 5.8E-13 86.6 12.1 51 223-280 4-55 (126)
86 cd04674 Nudix_Hydrolase_16 Mem 98.7 2.4E-07 5.3E-12 79.7 12.0 47 232-282 16-62 (118)
87 KOG3084 NADH pyrophosphatase I 98.7 7.3E-09 1.6E-13 101.4 2.7 97 232-343 200-300 (345)
88 cd03670 ADPRase_NUDT9 ADP-ribo 98.6 4.3E-07 9.3E-12 84.1 10.6 104 230-340 47-170 (186)
89 KOG3041 Nucleoside diphosphate 98.5 1.3E-06 2.9E-11 80.7 12.9 118 219-344 75-197 (225)
90 cd03431 DNA_Glycosylase_C DNA 98.3 8.9E-06 1.9E-10 67.4 12.2 92 231-340 13-104 (118)
91 KOG2839 Diadenosine and diphos 98.3 2.3E-06 4.9E-11 75.6 8.2 104 231-344 23-128 (145)
92 KOG0648 Predicted NUDIX hydrol 97.7 1.9E-05 4.1E-10 77.5 2.6 131 223-363 119-254 (295)
93 COG4112 Predicted phosphoester 97.1 0.0029 6.3E-08 57.3 8.9 119 233-358 73-201 (203)
94 PF14815 NUDIX_4: NUDIX domain 97.1 0.0014 3.1E-08 54.9 6.1 98 228-340 5-102 (114)
95 COG4119 Predicted NTP pyrophos 96.7 0.013 2.7E-07 51.3 9.0 109 247-366 35-153 (161)
96 KOG4195 Transient receptor pot 94.3 0.087 1.9E-06 50.1 5.7 39 233-277 140-178 (275)
97 KOG4432 Uncharacterized NUDIX 85.1 3.6 7.8E-05 41.0 7.7 101 253-362 288-397 (405)
98 KOG4432 Uncharacterized NUDIX 83.2 3.8 8.2E-05 40.9 6.9 106 252-362 82-191 (405)
99 KOG1202 Animal-type fatty acid 63.7 8 0.00017 45.4 4.1 63 219-282 225-295 (2376)
100 PF13869 NUDIX_2: Nucleotide h 63.6 1.2E+02 0.0026 28.5 11.2 104 225-340 51-169 (188)
101 PRK10880 adenine DNA glycosyla 63.4 59 0.0013 33.3 10.0 40 232-280 242-281 (350)
102 PF14443 DBC1: DBC1 62.3 42 0.00091 29.5 7.5 79 232-310 8-90 (126)
103 KOG4548 Mitochondrial ribosoma 50.6 74 0.0016 31.2 7.8 106 230-343 138-249 (263)
104 PF03487 IL13: Interleukin-13; 37.0 28 0.00061 24.6 1.9 22 255-276 15-36 (43)
105 PF04433 SWIRM: SWIRM domain; 26.2 54 0.0012 26.1 2.3 34 331-367 52-85 (86)
106 PF08057 Ery_res_leader2: Eryt 25.9 40 0.00087 18.2 0.9 12 9-20 2-13 (14)
107 cd00045 DED The Death Effector 23.0 61 0.0013 25.6 2.0 34 350-383 36-70 (77)
No 1
>PLN02839 nudix hydrolase
Probab=100.00 E-value=6.8e-93 Score=701.87 Aligned_cols=349 Identities=60% Similarity=1.078 Sum_probs=325.2
Q ss_pred cceeeeeecccccccccccceecccccccccccccccccceeccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeeeEE
Q 016606 37 FPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFI 116 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~pf~ 116 (386)
+|+ |...|++.+.++++..+...+--+-++++|||||||+|++++||++++++++++|+++|++||++..+++.|.||+
T Consensus 22 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf~ 100 (372)
T PLN02839 22 IPT-LRWRSSSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFV 100 (372)
T ss_pred cee-eEeecccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCeE
Confidence 677 8888888888888666555544456788999999999999999999999999999999999999976778999999
Q ss_pred ECCEEEeeecHHHHHHhhcCCCeEEEeCCCC--CcccceEEeccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCcceeecc
Q 016606 117 IEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVA 194 (386)
Q Consensus 117 ~~g~~vG~i~p~~~~~L~~~~~~f~~~~~~~--~~~~~~v~L~~~~~~~~~rt~~~~~v~~~l~~~g~~~gwr~E~~~V~ 194 (386)
++|++||||+|.++++|.+|+++|.+.++++ .....+|+|.+.+.++++||+++++++++|+++|+++|||||+|+|+
T Consensus 101 v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V~ 180 (372)
T PLN02839 101 IEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVK 180 (372)
T ss_pred ECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCccccc
Confidence 9999999999999999999999999864321 12246899999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHh
Q 016606 195 STFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274 (386)
Q Consensus 195 ~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~E 274 (386)
+.+|.++++.|||+++++||+.+||||||||+.++++++|||+|||.+|++||||||++|||||.+||++.++++||++|
T Consensus 181 ~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~E 260 (372)
T PLN02839 181 PSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEE 260 (372)
T ss_pred cCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHH
Confidence 88888999999999999999999999999999877888999999999999999999999999999999999999999999
Q ss_pred hhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHH
Q 016606 275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSL 354 (386)
Q Consensus 275 EaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~al 354 (386)
||||+.+..++++++|+++|.+..+.++++|++|+||+++|++++|+++||||++|.+|+++|+.+.+.++++|||||++
T Consensus 261 EAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aL 340 (372)
T PLN02839 261 EAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSL 340 (372)
T ss_pred HcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcCCCCCcccHH
Confidence 99999887777999999999988888899999999999999999999999999999999999999999987679999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHhcccCCCC
Q 016606 355 AIIDFLFRHGYIRPEYFGYLDLLQSLRRGDFS 386 (386)
Q Consensus 355 Vlldfl~RhG~i~p~~~~y~ei~~~l~r~~~~ 386 (386)
|++|||+|||+|+||+|+|+||++|||+|+|+
T Consensus 341 ViiDFLiRhG~Itpe~p~y~ei~~rlh~g~~~ 372 (372)
T PLN02839 341 VIIDFLFRHGFIRPESSGYLDLYRRLRNGDCS 372 (372)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999997
No 2
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-55 Score=409.67 Aligned_cols=280 Identities=33% Similarity=0.563 Sum_probs=242.8
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEECCEEEeeecHHHHHHhhcCCCeEE---EeCCCCCcccceEEeccCCCCHHHHHHH
Q 016606 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFI---YSGNNGGRFGSHVKLNSKLKTADERTRV 169 (386)
Q Consensus 93 ~~~~~~i~~cn~~~~~~~~~~pf~~~g~~vG~i~p~~~~~L~~~~~~f~---~~~~~~~~~~~~v~L~~~~~~~~~rt~~ 169 (386)
-++++..+.|.+|..-...-+||..+|..||||.|.++++|.+.+..+- ... ++.+ +.+ ..+++.|+..
T Consensus 11 ~~~~elmd~~~~f~~f~~g~i~~~~~~~~iG~v~~~vl~~lek~~~~~f~~~~~~------~e~~-~~~-a~~f~~r~~~ 82 (306)
T KOG4313|consen 11 LNAEELLDECDSFNGFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVP------GEYI-EIN-ASTFEKRTDI 82 (306)
T ss_pred cCHHHHHHHHHHhcCccccceeceeccceeeeecHHHHHHHHhccchheeeeecc------ccce-ecc-cccchhhhhH
Confidence 3466667788887533344566777779999999999999998876432 221 2223 333 2567899999
Q ss_pred HHHHHHHHHHcC---CCCCCCcceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEE--CCceEEEEEEeCCCCC
Q 016606 170 VGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEK--DGQKFLWIGKRSQVKS 244 (386)
Q Consensus 170 ~~~v~~~l~~~g---~~~gwr~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~--dg~~~llIqrRS~~K~ 244 (386)
+++++.+|+.+. ...+||||+|.|| .+. +++..+|||++++||+.+||||+||||.+ -+..++|++|||++|+
T Consensus 83 ~~~~~~~~~~~~~l~~a~qwrne~Y~v~-~~k-kp~l~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKq 160 (306)
T KOG4313|consen 83 LAKVLEHWRHNNTFGIADQWRNELYTVY-KSK-KPVLAVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQ 160 (306)
T ss_pred HHHHHHHHHHhccccchhcccceeeEEE-ecC-cceeEeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccc
Confidence 999999998754 3458999999999 444 78999999999999999999999999986 3457899999999999
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEE-eeCCCeeeeEEEEEEEEEcCCCcccCCC
Q 016606 245 TYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT-DINGFSYKRDVIFCYDLKLPEDFVPMNQ 323 (386)
Q Consensus 245 t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~-~~~~~gi~~ev~~vYdl~l~~d~~p~~~ 323 (386)
||||||||++|||+..|-+..+++++|..|||.|+.+...++++.|+++|. +++-.++++|+.|+||+++|.+++|+++
T Consensus 161 TWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~n 240 (306)
T KOG4313|consen 161 TWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNN 240 (306)
T ss_pred cCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCC
Confidence 999999999999999999999999999999999999888889999999998 5666678899999999999999999999
Q ss_pred CCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcCCCCCCCCCHHHHHHhcccC
Q 016606 324 DGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRRG 383 (386)
Q Consensus 324 dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG~i~p~~~~y~ei~~~l~r~ 383 (386)
||||++|.++++.|..+.+... .||||||+|++||++|||+|+|.+|.|++.+.|+||.
T Consensus 241 DGEV~~F~Lltl~~~v~~l~~k-~FKpncAlV~iDflirHg~itp~~p~yl~~l~rihr~ 299 (306)
T KOG4313|consen 241 DGEVQAFELLTLKDCVERLFTK-DFKPNCALVVIDFLIRHGTITPQHPQYLQTLERIHRP 299 (306)
T ss_pred CCceeeEeeecHHHHHHHHHhh-ccCCCcceEEEEEeecceecCCCChhHHHHHHhcccc
Confidence 9999999999999999999875 6999999999999999999999779999999999986
No 3
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=100.00 E-value=8.3e-42 Score=310.76 Aligned_cols=178 Identities=47% Similarity=0.870 Sum_probs=160.1
Q ss_pred CCCcceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEECC-ceEEEEEEeCCCCCCCCCccccccccCCCCCCC
Q 016606 185 DIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDG-QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIA 263 (386)
Q Consensus 185 gwr~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg-~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs 263 (386)
|||||+|+|||++| ++++.++|++++.+|+.|++||+++|+.+.+ +++||+||||.+|.+|||+||+++|||+++||+
T Consensus 1 ~~~~E~~~v~d~~~-~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~ 79 (180)
T cd03676 1 GWRNELYAVYGPFG-EPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG 79 (180)
T ss_pred CCcCcceeeECCCC-CEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC
Confidence 79999999999998 5779999999999999999999999987432 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccccCCceeeEEEEEEee-CCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHH
Q 016606 264 CGENIIKECEEEAGIPRSISNRARPVGAVSYTDI-NGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 264 ~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~-~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
+.+||+||++|||||+....+.+.++|.+.|.+. .+.++.+++.|+|.+.++.+..+.++++||.++.|++++|+.+++
T Consensus 80 ~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 80 PEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 9999999999999999876544667788888775 445667788999998886665677889999999999999999999
Q ss_pred HcCCCCCCCcHHHHHHHHHHcC
Q 016606 343 RRTEFFKPNCSLAIIDFLFRHG 364 (386)
Q Consensus 343 ~~~~~fkpn~alVlldfl~RhG 364 (386)
.++ .|+|++++|+++||+|||
T Consensus 160 ~~g-~~~~~~~lv~~~~~~~~~ 180 (180)
T cd03676 160 KEG-EFKPNCALVTLDFLIRHG 180 (180)
T ss_pred HcC-CCCcccHhHHHHHHhhcC
Confidence 986 799999999999999998
No 4
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.92 E-value=8.8e-25 Score=196.44 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=124.7
Q ss_pred cceeecccCCCCceeEEEeccccccCCcc-ceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHH
Q 016606 188 NELYPVASTFGSPIFFSLDRAAAPYFGIK-AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (386)
Q Consensus 188 ~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~-~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~e 266 (386)
.|+++|||++| .+.+..+|+.++..|+. |.+|++..+ ++++++|++||+..|..|||.|++++||++++||++++
T Consensus 1 ~e~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~v~v~i~---~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~e 76 (165)
T cd02885 1 EELVILVDEDD-NPIGTAEKLEAHLKGTLLHRAFSVFLF---NSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKD 76 (165)
T ss_pred CcEEEEECCCC-CCccccCHHHHhhcCCcceeEEEEEEE---cCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHH
Confidence 48999999999 56779999999999999 889988554 45568999999999989999999999999999999999
Q ss_pred HHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCe-eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcC
Q 016606 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS-YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRT 345 (386)
Q Consensus 267 Aa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~g-i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~ 345 (386)
||+||++||+||.+.... +. .+.+.|......+ ...++.++|.+....+. .++++|+.+++|++++|+.+++.++
T Consensus 77 aa~REl~EEtGl~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~--~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 77 AAQRRLREELGITGDLLE-LV-LPRFRYRAPDDGGLVEHEIDHVFFARADVTL--IPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HHHHHHHHHhCCCccchh-hc-cceEEEEEEcCCCceeeEEEEEEEEEeCCCC--CCCccceeEEEEECHHHHHHHHHhC
Confidence 999999999999987643 22 3455554332222 22345677777765443 3467899999999999999999987
Q ss_pred -CCCCCC
Q 016606 346 -EFFKPN 351 (386)
Q Consensus 346 -~~fkpn 351 (386)
++|+|.
T Consensus 153 ~~~~~~~ 159 (165)
T cd02885 153 PEAFTPW 159 (165)
T ss_pred chhcCHH
Confidence 566665
No 5
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.92 E-value=2.5e-24 Score=197.20 Aligned_cols=172 Identities=19% Similarity=0.204 Sum_probs=133.3
Q ss_pred CcceeecccCCCCceeEEEecccccc-CCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHH
Q 016606 187 QNELYPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265 (386)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~-~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~ 265 (386)
.+|+++|||++| .+++.++|..++. .|..|.+|++..+ +++++||++||+..|..+||+||+++||++++||+++
T Consensus 4 ~~E~~~~vd~~~-~~~g~~~r~~~~~~~~~~h~av~v~i~---~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~ 79 (184)
T PRK03759 4 ETELVVLLDEQG-VPTGTAEKAAAHTADTPLHLAFSCYLF---DADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLE 79 (184)
T ss_pred CceeEEEECCCC-CCcccccHHHHHhcCCCeeeEEEEEEE---cCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHH
Confidence 579999999999 5778999999995 7998888886544 4556999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccccCCceeeEEEEEEeeC-CCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 266 ENIIKECEEEAGIPRSISNRARPVGAVSYTDIN-GFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 266 eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~-~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
+||+||+.|||||.+.... ...+.+.|.... ...+..++.++|.+..... +.++++|+.++.|++++|+.+++.+
T Consensus 80 ~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~--~~~~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 80 DAVIRRCREELGVEITDLE--LVLPDFRYRATDPNGIVENEVCPVFAARVTSA--LQPNPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred HHHHHHHHHHhCCCccccc--cccceEEEEEecCCCceeeEEEEEEEEEECCC--CCCChhHeeeEEEECHHHHHHHHHh
Confidence 9999999999999886432 223444443322 1223345667887776643 4556789999999999999999998
Q ss_pred CC-CCCCCcHHHHHHHHHHcCCC
Q 016606 345 TE-FFKPNCSLAIIDFLFRHGYI 366 (386)
Q Consensus 345 ~~-~fkpn~alVlldfl~RhG~i 366 (386)
+. .|+|+..+++.....|.-++
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~ 178 (184)
T PRK03759 156 TPWAFSPWMVLQAANLEARELLL 178 (184)
T ss_pred CCcccChHHHHHHHHhcccccCc
Confidence 73 56777766666555554443
No 6
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.91 E-value=9e-24 Score=189.06 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=120.7
Q ss_pred eecccCCCCceeEEEecccccc-CCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHH
Q 016606 191 YPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENII 269 (386)
Q Consensus 191 ~~V~~~~g~~~l~~ieRaa~~~-~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~ 269 (386)
++|||++| .+++.+.|..++. .|+.|.+|++..+ |++++||++||+.+|..+||+||+++||+++.|| .+||+
T Consensus 1 ~~~~d~~~-~~~g~~~r~~~~~~~g~~h~~v~v~v~---~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~ 74 (158)
T TIGR02150 1 VILVDEND-NPIGTASKAEVHLQETPLHRAFSVFLF---NEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAI 74 (158)
T ss_pred CEEECCCC-CEeeeeeHHHhhhcCCCeEEEEEEEEE---cCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHH
Confidence 46899998 5778899999995 7999999997654 5566899999999999999999999999999999 49999
Q ss_pred HHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCC-CC
Q 016606 270 KECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTE-FF 348 (386)
Q Consensus 270 REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~-~f 348 (386)
||++||+||.....+ +..++.+.|....+.+. .++.++|.+..+.+ +.++++|+++++|++++|+.+++.... .+
T Consensus 75 REl~EE~Gl~~~~~~-l~~~~~~~~~~~~~~g~-~~~~~~f~~~~~~~--~~~~~~Ev~~~~W~~~~el~~~~~~~~~~~ 150 (158)
T TIGR02150 75 RRLREELGIPADDVP-LTVLPRFSYRARDAWGE-HELCPVFFARAPVP--LNPNPEEVAEYRWVSLEELKEILKAPWAGF 150 (158)
T ss_pred HHHHHHHCCCccccc-eEEcceEEEEEecCCCc-EEEEEEEEEecCCc--ccCChhHeeeEEEeCHHHHHHHHhcCcccc
Confidence 999999999987654 44555555654332232 36678888877653 555678999999999999999998753 46
Q ss_pred CCC
Q 016606 349 KPN 351 (386)
Q Consensus 349 kpn 351 (386)
+|+
T Consensus 151 ~p~ 153 (158)
T TIGR02150 151 SPW 153 (158)
T ss_pred CHh
Confidence 664
No 7
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.91 E-value=1.7e-23 Score=191.44 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=127.6
Q ss_pred CcceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHH
Q 016606 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (386)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~e 266 (386)
-.|+++|||.+| .+++.++|..++..|+.|.++++..+ |.+++||+++|+..+..+||+|+.++||++++|||+.+
T Consensus 8 ~~e~~~~~d~~~-~~~g~~~~~~~~~~~~~h~~~~v~v~---~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~e 83 (180)
T PRK15393 8 STEWVDIVNENN-EVIAQASREQMRAQCLRHRATYIVVH---DGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLE 83 (180)
T ss_pred CceEEEEECCCC-CEeeEEEHHHHhhCCCceEEEEEEEE---CCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHH
Confidence 468999999999 68889999999999999999887554 56679999999998888999999999999999999999
Q ss_pred HHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCC
Q 016606 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTE 346 (386)
Q Consensus 267 Aa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~ 346 (386)
||+||+.|||||.... +...|.+.|.... . ....++|.+..... +.++++|+.+++|++++++.+++.
T Consensus 84 AA~REL~EEtGl~~~~---~~~~~~~~~~~~~---~-~~~~~~f~~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~--- 151 (180)
T PRK15393 84 SARREAEEELGIAGVP---FAEHGQFYFEDEN---C-RVWGALFSCVSHGP--FALQEEEVSEVCWMTPEEITARCD--- 151 (180)
T ss_pred HHHHHHHHHHCCCCcc---ceeceeEEecCCC---c-eEEEEEEEEEeCCC--CCCChHHeeEEEECCHHHHhhhhh---
Confidence 9999999999998653 3345555443221 1 12234455544333 344678999999999999999874
Q ss_pred CCCCCcHHHHHHHHHHcC
Q 016606 347 FFKPNCSLAIIDFLFRHG 364 (386)
Q Consensus 347 ~fkpn~alVlldfl~RhG 364 (386)
.|+|.....+.+++.++-
T Consensus 152 ~~~~~~~~~l~~~l~~~~ 169 (180)
T PRK15393 152 EFTPDSLKALALWLTRNA 169 (180)
T ss_pred hcCccHHHHHHHHHHhhc
Confidence 488877777778887764
No 8
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.91 E-value=1.5e-23 Score=200.72 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=130.8
Q ss_pred CcceeecccCCCCceeEEEecccccc------CCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCC
Q 016606 187 QNELYPVASTFGSPIFFSLDRAAAPY------FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH 260 (386)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~------~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~a 260 (386)
.+|.+.|||+++ ++++.+.|..+|. .|+.|+++|+..+ |.+++|||||||..|.+|||+||+++|||+.+
T Consensus 21 ~~e~v~lvDe~d-~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~---n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ 96 (247)
T PLN02552 21 FEDECILVDEND-NVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLF---NSKYELLLQQRAATKVTFPLVWTNTCCSHPLY 96 (247)
T ss_pred hcCeEEEEcCCC-CEEeeeEHhhhhccccccCCCceEEEEEEEEE---cCCCeEEEEEecCCCCCCCcceecccCCcccc
Confidence 469999999998 6889999999885 7999999999876 55679999999999999999999999999998
Q ss_pred CCC-----------------HHHHHHHHHHhhhCCCcccc--CCceeeEEEEEEeeCC------Cee-eeEEEEEEEEEc
Q 016606 261 GIA-----------------CGENIIKECEEEAGIPRSIS--NRARPVGAVSYTDING------FSY-KRDVIFCYDLKL 314 (386)
Q Consensus 261 GEs-----------------~~eAa~REl~EEaGL~~~~~--~~l~~vg~isy~~~~~------~gi-~~ev~~vYdl~l 314 (386)
||+ +.+||+||+.||+||..... ..+.+++.+.|..... .++ ..++.++|-...
T Consensus 97 ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~ 176 (247)
T PLN02552 97 GQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRP 176 (247)
T ss_pred ccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEe
Confidence 754 57899999999999996542 2367777777765432 222 235544443322
Q ss_pred CCCcccCCCCCceeeEEEEcHHHHHHHHHcC--CCCCCCcHHHHHHHHH
Q 016606 315 PEDFVPMNQDGEVESFQLMPVAHVANVIRRT--EFFKPNCSLAIIDFLF 361 (386)
Q Consensus 315 ~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~--~~fkpn~alVlldfl~ 361 (386)
..+..+.++++||.+++|++++|+.+++... ..|+|.-.+++-+|+.
T Consensus 177 ~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw~~~~~~~~l~ 225 (247)
T PLN02552 177 VRDVKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPWFRLIVDNFLM 225 (247)
T ss_pred cCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHHHHHHHHHHHH
Confidence 2222466788999999999999999998632 3578876665555543
No 9
>PLN02791 Nudix hydrolase homolog
Probab=99.90 E-value=2.4e-23 Score=224.47 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=128.4
Q ss_pred CcceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHH
Q 016606 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (386)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~e 266 (386)
.+|+++|||++|++++....|+.+|..|+.|++||+..+. ..+++|||||||..|.+|||+||+++|||+.+||++.+
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn--~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~e 79 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYS--ESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL 79 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEE--CCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHH
Confidence 4799999999997666568999999999999999998773 22469999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccccCCceeeEEEEEEee--CCCeeeeEEEEEEEEEcCCC---cccCCCCCceeeEEEEcHHHHHHH
Q 016606 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDI--NGFSYKRDVIFCYDLKLPED---FVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 267 Aa~REl~EEaGL~~~~~~~l~~vg~isy~~~--~~~gi~~ev~~vYdl~l~~d---~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
||+||++||+||..... .+.+++.+.+... .+....+++.++|.+....+ ..+.+|++||++++|++++|+.++
T Consensus 80 AA~REL~EELGI~l~~~-~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 80 SAQRELEEELGIILPKD-AFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred HHHHHHHHHhCCCCChh-heeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 99999999999986432 2566666544322 22223557777787653221 134668899999999999999999
Q ss_pred HHcC-CCCCCC
Q 016606 342 IRRT-EFFKPN 351 (386)
Q Consensus 342 l~~~-~~fkpn 351 (386)
+... ..|.|.
T Consensus 159 l~~~~~~fvP~ 169 (770)
T PLN02791 159 LAKEDPAYVPY 169 (770)
T ss_pred HhcCCCceeec
Confidence 9762 457775
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=5.3e-22 Score=173.97 Aligned_cols=129 Identities=26% Similarity=0.294 Sum_probs=99.4
Q ss_pred cceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEE
Q 016606 216 KAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT 295 (386)
Q Consensus 216 ~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~ 295 (386)
.|++||+..+-..+++++||+++|+..|..|||+||+++||+++.||++++||+||+.|||||.++.. .+..+|.+.+.
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~-~l~~~~~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSAD-DLIPLGTFKIE 79 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChH-HeEEeeEEEEe
Confidence 36788987775444558999999999999999999998999999999999999999999999987543 26677777665
Q ss_pred ee-CCCeeeeEEEEEEEEEcCCC-cccCCCCCceeeEEEEcHHHHHHHHHcC
Q 016606 296 DI-NGFSYKRDVIFCYDLKLPED-FVPMNQDGEVESFQLMPVAHVANVIRRT 345 (386)
Q Consensus 296 ~~-~~~gi~~ev~~vYdl~l~~d-~~p~~~dgEV~~f~wv~~dEv~~~l~~~ 345 (386)
+. .+.....++.++|.+..... -.+.++++|+.+++|++++++.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 131 (144)
T cd04692 80 YDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE 131 (144)
T ss_pred ccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC
Confidence 43 22222334555665555421 1345677899999999999999999875
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=5.9e-20 Score=157.54 Aligned_cols=121 Identities=22% Similarity=0.255 Sum_probs=92.6
Q ss_pred eeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC
Q 016606 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING 299 (386)
Q Consensus 220 VHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~ 299 (386)
+++..+ |.+++||+++|+.++..+||+|++++||+++.||++.+||+||+.||+||+... +..++.+.+.....
T Consensus 3 ~~v~i~---~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~---l~~~~~~~~~~~~~ 76 (126)
T cd04697 3 TYIFVF---NSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ---LTPLGLFYYDTDGN 76 (126)
T ss_pred EEEEEE---cCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccc---cEEeeEEEecCCCc
Confidence 444443 455699999999999889999999889999999999999999999999998863 55666655533221
Q ss_pred CeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcH
Q 016606 300 FSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCS 353 (386)
Q Consensus 300 ~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~a 353 (386)
....++|.+....+ +.++++|+.+++|++++|+.+++..+ .|+|++.
T Consensus 77 ----~~~~~~f~~~~~~~--~~~~~~E~~~~~w~~~~el~~~~~~~-~~~~~~~ 123 (126)
T cd04697 77 ----RVWGKVFSCVYDGP--LKLQEEEVEEITWLSINEILQFKEGE-NITPDSL 123 (126)
T ss_pred ----eEEEEEEEEEECCC--CCCCHhHhhheEEcCHHHHHHHhhcC-cccCCcc
Confidence 12234555554433 34567899999999999999999886 6988764
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=1.8e-19 Score=154.05 Aligned_cols=117 Identities=22% Similarity=0.348 Sum_probs=87.8
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+.+++||++||+..|..+||+|++++||+++.||++ +||+||++||+||.+.... +..++.+.+.. . +.. . .+
T Consensus 9 ~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~--~-~~~-~-~~ 81 (127)
T cd04693 9 NSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSE-LRPLFRYFFEA--E-GFD-D-YY 81 (127)
T ss_pred eCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhh-cEEEEEEEeec--C-CeE-E-EE
Confidence 445699999999999899999999889999999999 9999999999999987533 44554443332 1 222 2 23
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHH
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSL 354 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~al 354 (386)
+|.+.... ..+.++++|+.+++|++++|+.+++.++ .++|+.++
T Consensus 82 ~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~~-~~~~~~~~ 125 (127)
T cd04693 82 LFYADVEI-GKLILQKEEVDEVKFVSKDEIDGLIGHG-EFTPYFES 125 (127)
T ss_pred EEEecCcc-cccccCHHHhhhEEEeCHHHHHHHHhcC-Cccccccc
Confidence 34333322 1344566899999999999999999986 68888765
No 13
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.80 E-value=1.6e-19 Score=162.27 Aligned_cols=170 Identities=13% Similarity=0.065 Sum_probs=137.1
Q ss_pred cceeecccCCCCceeEEEecccccc-CCc-cceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHH
Q 016606 188 NELYPVASTFGSPIFFSLDRAAAPY-FGI-KAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265 (386)
Q Consensus 188 ~E~~~V~~~~g~~~l~~ieRaa~~~-~Gi-~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~ 265 (386)
+|..=+.|++| .+.+..++.++|. -++ .|++.-+..| |.+++|||+||+..|.+|||.|+|+|+||--.||+..
T Consensus 3 ~e~vill~~~d-~~~G~~~k~~~Ht~d~~~LHrAFS~~lF---ne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~ 78 (185)
T COG1443 3 TEDVILLNDDD-VPTGTAEKLAAHTGDTPRLHRAFSSFLF---NERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNE 78 (185)
T ss_pred ceeEEEECCCC-CccccchhhhhhccccHHHHhhhheeEE---CCCCceeeehhhhhcccCcccccccccCCCcCCCchH
Confidence 56677788888 6889999999997 444 3777766555 7778999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCe-eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 266 ENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS-YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 266 eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~g-i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
+|++|-+.+|+||+++....+..+-.+.|......+ ...|+++++...+.. .+.++++||.+++|++.+++.+++..
T Consensus 79 ~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~--~~~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 79 DAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS--ALDPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred HHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC--CCCCChHHhhheeccCHHHHHHhhcC
Confidence 999999999999999865556666678887655443 456888888887765 46777899999999999999999987
Q ss_pred CC-CCCCCcHHHHHHHHHHc
Q 016606 345 TE-FFKPNCSLAIIDFLFRH 363 (386)
Q Consensus 345 ~~-~fkpn~alVlldfl~Rh 363 (386)
+. .|+|.+.+++-.+..|.
T Consensus 157 ~~~~fsPW~~~~~~~~~~~~ 176 (185)
T COG1443 157 TPWAFSPWFVIQAENDEARK 176 (185)
T ss_pred CceeeChHHHHHhcchhhhc
Confidence 52 35688776665554443
No 14
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.70 E-value=4.8e-16 Score=134.14 Aligned_cols=133 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred eeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeC
Q 016606 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298 (386)
Q Consensus 219 gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~ 298 (386)
+|.+..+ +.++++|+.+|...+ ..++.|+. |||+++.||++.+||+||++||+||.... +..++.+.+. .
T Consensus 4 ~v~v~~~---~~~~~iLl~~~~~~~-~~~~~w~~-PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~---~~~~~~~~~~--~ 73 (137)
T cd03424 4 AVAVLPY---DDDGKVVLVRQYRPP-VGGWLLEL-PAGLIDPGEDPEEAARRELEEETGYEAGD---LEKLGSFYPS--P 73 (137)
T ss_pred EEEEEEE---cCCCeEEEEEeeecC-CCCEEEEe-CCccCCCCCCHHHHHHHHHHHHHCCCccc---eEEEeeEecC--C
Confidence 4444433 444678887664433 36789985 69999999999999999999999999863 4455544332 1
Q ss_pred CCeeeeEEEEEEEEEcCCCcc-cCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcC
Q 016606 299 GFSYKRDVIFCYDLKLPEDFV-PMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHG 364 (386)
Q Consensus 299 ~~gi~~ev~~vYdl~l~~d~~-p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG 364 (386)
+ .....+++|.+....... +..+++|+.+++|++++|+.+++.++ .++++..++++..+++++
T Consensus 74 ~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~ 137 (137)
T cd03424 74 G--FSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG-EIIDDATLIALLLWLALN 137 (137)
T ss_pred c--ccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC-CCcccHHHHHHHHHHHcC
Confidence 1 112334556666554322 45667899999999999999999986 689999999988888763
No 15
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.7e-16 Score=131.66 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=75.9
Q ss_pred eEEEEEEeCCC-CCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEE
Q 016606 232 KFLWIGKRSQV-KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (386)
Q Consensus 232 ~~llIqrRS~~-K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vY 310 (386)
+++|+++|+.. |..|||+|+. +||+++.||++++||+||+.||||+.++... +... ..|.... ..+..++|
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~-PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~--~~~~~~~----~~~~~~~f 83 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDL-PGGHREGGETPLECVLRELLEEIGLTLPESR-IPWF--RVYPSAS----PPGTEHVF 83 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeC-CCccccCCCCHHHHHHHHHHHHhCCcccccc-ccee--EecccCC----CCceEEEE
Confidence 69999999987 7889999985 6999999999999999999999999986432 2222 2222221 12445666
Q ss_pred EEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 311 DLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 311 dl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.+..........+++|+.+++|++++|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 84 VVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred EEEEecCCCccccCchhheeecccHHHHhhc
Confidence 6666543223456789999999999999764
No 16
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.66 E-value=5.8e-16 Score=138.28 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=81.8
Q ss_pred eeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCC-CCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEe
Q 016606 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYTD 296 (386)
Q Consensus 218 ~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aG-Es~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~ 296 (386)
.+|++..+- .++++++|++||+..+..+||+|++ +||+++.| |++++||+||++||+|+.... +..++.+....
T Consensus 3 ~av~v~l~~-~~~~~~vLL~~R~~~~~~~~g~w~l-PGG~ve~gdEs~~eaa~REl~EEtGl~~~~---~~~l~~~~~~~ 77 (157)
T cd03426 3 AAVLVLLVE-REGELRVLLTKRASHLRSHPGQVAF-PGGKVDPGDEDPVATALREAEEEIGLPPDS---VEVLGRLPPYY 77 (157)
T ss_pred eEEEEEEEe-CCCceEEEEEEcccccccCCCcEEC-CCCCcCCCcCCHHHHHHHHHHHHhCCCccc---eEEEEECCCcc
Confidence 356665552 2445799999999998889999985 69999999 999999999999999998765 44555433222
Q ss_pred eCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 297 INGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 297 ~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
... + ..+++|.+....+..+.++++|+.++.|++++|+.+.
T Consensus 78 ~~~-~---~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 78 TRS-G---FVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred ccC-C---CEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 111 1 1223333443332234566679999999999999874
No 17
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.65 E-value=1.2e-15 Score=130.52 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=80.2
Q ss_pred eeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEE-EEEee
Q 016606 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV-SYTDI 297 (386)
Q Consensus 219 gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~i-sy~~~ 297 (386)
.|.+..+-. .+++++|+.||+.. +||+|+. +||+++.||++.+||+||++||+||.......+...+.+ .+...
T Consensus 3 ~~~v~~~~~-~~~~~vLL~~r~~~---~~~~w~~-PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04664 3 SVLVVPYRL-TGEGRVLLLRRSDK---YAGFWQS-VTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFT 77 (129)
T ss_pred EEEEEEEEe-CCCCEEEEEEeCCC---CCCcccc-cCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccC
Confidence 345544421 23569999999875 8999985 799999999999999999999999987543222222111 12221
Q ss_pred CCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 298 NGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 298 ~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
. .+ .....++|.+.+.... +...++|+.+++|++++++.+++.
T Consensus 78 ~-~~-~~~~~~~f~~~~~~~~-~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 78 D-NG-RVWTEHPFAFHLPSDA-VVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred C-Cc-eEEEEeEEEEEcCCCC-cccCCccccccEecCHHHHHHHHc
Confidence 1 11 2244577777776543 233567999999999999998865
No 18
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.64 E-value=2e-15 Score=131.59 Aligned_cols=105 Identities=17% Similarity=0.286 Sum_probs=70.7
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCcee---eEEEE-EEeeCCCeeeeEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARP---VGAVS-YTDINGFSYKRDV 306 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~---vg~is-y~~~~~~gi~~ev 306 (386)
++++|++||+..|..|||+|+++ ||++++|||+.+||+||+.||+||.+.... +.+ .+.+. ..+..+. ..++
T Consensus 14 ~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ 89 (141)
T PRK15472 14 DGAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGEQLLLTE-ITPWTFRDDIRTKTYADGR--KEEI 89 (141)
T ss_pred CCEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCCceeeee-eccccccccceeEEecCCC--ceeE
Confidence 35899999998888999999865 999999999999999999999999864322 111 11111 1111111 1122
Q ss_pred ---EEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 307 ---IFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 307 ---~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.++|.+..... .+.+ .+|+.+++|++++|+.++
T Consensus 90 ~~~~~~~~~~~~~~-~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 90 YMIYLIFDCVSANR-DVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEEEEEEEeecCCC-cccC-ChhhheEEEccHHHhccc
Confidence 23455544322 1222 369999999999999875
No 19
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.61 E-value=4e-15 Score=125.92 Aligned_cols=109 Identities=24% Similarity=0.396 Sum_probs=81.9
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++|+.||+..+..++|+|.. +||+++.||++.+||+||+.||+|+.... ....+...+....+.. .....+.|.
T Consensus 14 ~~vLl~~r~~~~~~~~~~~~~-pgG~i~~~E~~~~aa~REl~EE~g~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (134)
T PF00293_consen 14 GKVLLIKRSRSPITFPGYWEL-PGGGIEPGESPEEAARRELKEETGLDVSP---LELLGLFSYPSPSGDP-EGEIVIFFI 88 (134)
T ss_dssp TEEEEEEESTTSSSSTTEEES-SEEEECTTSHHHHHHHHHHHHHHSEEEEE---EEEEEEEEEEETTTES-SEEEEEEEE
T ss_pred cEEEEEEecCCCCCCCCeEec-ceeeEEcCCchhhhHHhhhhhcccceecc---cccceeeeecccCCCc-ccEEEEEEE
Confidence 399999999987778999975 79999999999999999999999999844 3445555555544322 123444555
Q ss_pred EEcCCCc-ccCCCCCceeeEEEEcHHHHHHHHHcC
Q 016606 312 LKLPEDF-VPMNQDGEVESFQLMPVAHVANVIRRT 345 (386)
Q Consensus 312 l~l~~d~-~p~~~dgEV~~f~wv~~dEv~~~l~~~ 345 (386)
+.++.+. .+.++.+|+.+++|++++|+.++...+
T Consensus 89 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 89 AELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred EEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 5554332 345566699999999999999998753
No 20
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.60 E-value=1.6e-14 Score=122.21 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=78.0
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCe--eeeEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS--YKRDVIFC 309 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~g--i~~ev~~v 309 (386)
+++|+.+|+..+ ++|.|++ +||+++.||++.+||+||++||||+.... ...++.+.+.+..+.. ....+.++
T Consensus 11 ~~vLl~~~~~~~--~~~~w~l-PgG~ve~gE~~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (128)
T cd04684 11 GKLLLIQKNGGP--YEGRWDL-PGGGIEPGESPEEALHREVLEETGLTVEI---GRRLGSASRYFYSPDGDYDAHHLCVF 84 (128)
T ss_pred CEEEEEEccCCC--CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCcEeec---ceeeeEEEEEEECCCCCeeccEEEEE
Confidence 589999998754 7899975 59999999999999999999999998765 4456666554433221 12355677
Q ss_pred EEEEcCCCcc-cCCCCCceeeEEEEcHHHHHHHH
Q 016606 310 YDLKLPEDFV-PMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 310 Ydl~l~~d~~-p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
|.+....+.. ....++|+.++.|++++++.+..
T Consensus 85 f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (128)
T cd04684 85 YDARVVGGALPVQEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred EEEEEecCccccCCCCCCceeeEEECHHHhhccC
Confidence 8887765432 13456789999999999998654
No 21
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.9e-14 Score=121.31 Aligned_cols=105 Identities=11% Similarity=0.171 Sum_probs=73.9
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
++||+.||...+ .++|+|+. +||+++.||++.+||+||+.||+||.+... .+..++.+.+...... ..+.+.|.
T Consensus 11 ~~vLL~~r~~~~-~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~v~~~-~~~~~~~~~~~~~~~~---~~~~~~f~ 84 (120)
T cd04683 11 DEVLLQRRANTG-YMDGQWAL-PAGHLEKGEDAVTAAVREAREEIGVTLDPE-DLRLAHTMHRRTEDIE---SRIGLFFT 84 (120)
T ss_pred CEEEEEEccCCC-CCCCeEeC-CccccCCCCCHHHHHHHHHHHHHCCccChh-heEEEEEEEecCCCCc---eEEEEEEE
Confidence 489999997654 46999986 599999999999999999999999987642 2455665544332211 23344455
Q ss_pred EEcCCCcccC-CCCCceeeEEEEcHHHHHHHHH
Q 016606 312 LKLPEDFVPM-NQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 312 l~l~~d~~p~-~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
+....+ .+. .+++|+.+++|++++++.+.+.
T Consensus 85 ~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 85 VRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence 554322 132 3457899999999999987654
No 22
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.4e-14 Score=122.84 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=74.1
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++|+.||+.++..+||+|+. +||+++.||++++||+||+.||||+.... +..++.+.+.. +. ...++.|.
T Consensus 11 ~~vLL~rR~~~~~~~~g~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~l~~~~~~~--~~---~~~~~~~~ 81 (117)
T cd04691 11 DKVLLERRSLTKNADPGKLNI-PGGHIEAGESQEEALLREVQEELGVDPLS---YTYLCSLYHPT--SE---LQLLHYYV 81 (117)
T ss_pred CEEEEEEeCCCCCCCCCeEEC-cceeecCCCCHHHHHHHHHHHHHCCCccc---ceEEEEEeccC--CC---eEEEEEEE
Confidence 589999999887779999964 69999999999999999999999998643 34444333221 11 23455566
Q ss_pred EEcCCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 312 LKLPEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 312 l~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
+....+ .+ +.+|+.+++|++++++..+...
T Consensus 82 ~~~~~~-~~--~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 82 VTFWQG-EI--PAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred EEEecC-CC--CcccccccEEcCHHHcchhhhh
Confidence 655432 12 2379999999999999876543
No 23
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.59 E-value=1.6e-14 Score=126.82 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeE---EEEEEe------eCC
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG---AVSYTD------ING 299 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg---~isy~~------~~~ 299 (386)
+.++++|+.||+. .||.|+. +||+++.|||+.+||+||++|||||.+.... +..++ ...|.. ...
T Consensus 16 ~~~~~vLl~~r~~----~~~~W~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (148)
T PRK09438 16 TPDLGVLMLQRAD----DPDFWQS-VTGSLEEGETPAQTAIREVKEETGIDVLAEQ-LTLIDCQRSIEYEIFPHWRHRYA 89 (148)
T ss_pred eCCCeEEEEEecC----CCCcEeC-CcccCCCCCCHHHHHHHHHHHHhCcCccccc-eeecccccccccccchhhhhccc
Confidence 3345788888854 3789985 6999999999999999999999999873211 22211 111211 001
Q ss_pred CeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHc
Q 016606 300 FSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRH 363 (386)
Q Consensus 300 ~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~Rh 363 (386)
.+......++|.+....+..+ ..+|+.++.|++++|+.+++. .|+-.-++.+++.|.
T Consensus 90 ~~~~~~~~~~f~~~~~~~~~~--~~~E~~~~~W~~~~e~~~~~~-----~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 90 PGVTRNTEHWFCLALPHERPV--VLTEHLAYQWLDAREAAALTK-----SWSNAEAIEQLVIRL 146 (148)
T ss_pred cccCCceeEEEEEecCCCCcc--ccCcccceeeCCHHHHHHHhc-----ChhHHHHHHHHHHHh
Confidence 122235567787776544323 345999999999999999753 355445555665553
No 24
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.9e-14 Score=121.31 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+.++++|+.+|+.. ..+|.|+. +||+++.||++.+||+||++||+|+.+... .+++.+.+....... ..+.+
T Consensus 11 ~~~~~vLL~~r~~~--~~~~~w~l-PgG~ve~gEt~~eaa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~--~~~~~ 82 (125)
T cd04679 11 RDDGKLLLVKRLRA--PEAGHWGI-PGGKVDWMEAVEDAVVREIEEETGLSIHST---RLLCVVDHIIEEPPQ--HWVAP 82 (125)
T ss_pred CCCCEEEEEEecCC--CCCCeEeC-CeeeccCCCCHHHHHHHHHHHHHCCCcccc---eEEEEEeecccCCCC--eEEEE
Confidence 44568999999753 35799986 599999999999999999999999998653 455555444322221 24455
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
+|.+....+.....+++|+.+++|++++++.+.+.
T Consensus 83 ~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 83 VYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 67666543322223456999999999999976553
No 25
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=5.8e-14 Score=124.19 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccC-CceeeEEEEEEee--CCCe---e
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN-RARPVGAVSYTDI--NGFS---Y 302 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~-~l~~vg~isy~~~--~~~g---i 302 (386)
|.+++|+++||+..+..|||+|++ +||+++.||++.+||+||+.||+||.+.... ..+.++...+.+. ...+ .
T Consensus 10 ~~~~~vLl~rr~~~~~~~~g~w~~-PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 88 (143)
T cd04694 10 SSDQKLLLTRRASSLRIFPNVWVP-PGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKR 88 (143)
T ss_pred cCCCEEEEEEECCCCCCCCCeEEC-cccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccc
Confidence 455699999999988889999986 5999999999999999999999999876431 1244554433221 1111 1
Q ss_pred eeEEEEEEEEEcCC----CcccCCCCCceeeEEEEcHHHHHHHHHcC
Q 016606 303 KRDVIFCYDLKLPE----DFVPMNQDGEVESFQLMPVAHVANVIRRT 345 (386)
Q Consensus 303 ~~ev~~vYdl~l~~----d~~p~~~dgEV~~f~wv~~dEv~~~l~~~ 345 (386)
...+.|+|...... ...+.++++||++++|++++++.+++...
T Consensus 89 ~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 89 HHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred eeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 22334444332221 11234566899999999999999999764
No 26
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.57 E-value=6.4e-14 Score=118.90 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+++++|++.+|... |.|+. |||+++.||++.+||+||++||+|+..... ..++.+.|......+.....++
T Consensus 13 ~~~~~vLl~~~~~~-----~~w~~-PgG~v~~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T cd03673 13 DGGIEVLLIHRPRG-----DDWSL-PKGKLEPGETPPEAAVREVEEETGIRAEVG---DPLGTIRYWFSSSGKRVHKTVH 83 (131)
T ss_pred CCCeEEEEEEcCCC-----CcccC-CCCccCCCCCHHHHHHHHHhhhhCCceEec---ceEEEEEEeccCCCCCcceEEE
Confidence 44579999998653 78975 599999999999999999999999988753 4556666654321111224455
Q ss_pred EEEEEcCCCcccCC-CCCceeeEEEEcHHHHHHHHH
Q 016606 309 CYDLKLPEDFVPMN-QDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 309 vYdl~l~~d~~p~~-~dgEV~~f~wv~~dEv~~~l~ 343 (386)
.|.+....+ .+.+ +++|+.+++|+|++|+.+++.
T Consensus 84 ~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 84 WWLMRALGG-EFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred EEEEEEcCC-CcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 566665432 1222 567999999999999988653
No 27
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=6.3e-15 Score=135.17 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=135.8
Q ss_pred ceeecccCCCCceeEEEeccccc-----cCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCC--C-
Q 016606 189 ELYPVASTFGSPIFFSLDRAAAP-----YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLP--H- 260 (386)
Q Consensus 189 E~~~V~~~~g~~~l~~ieRaa~~-----~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~--a- 260 (386)
|..-++|+++ .+++.-....++ ..|+.|++.++..| |.++++++|+||..|-+|||.|.+++.+|.- .
T Consensus 20 e~ci~VDenD-~~IG~~tk~~cHl~eni~kglLHRaFSVFlF---ns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~ 95 (225)
T KOG0142|consen 20 ENCILVDEND-NVIGAGTKKNCHLMENIEKGLLHRAFSVFLF---NSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPG 95 (225)
T ss_pred hheEeecccc-ccccchhhhhhhcchhHHhhhhhheeeEEEe---cCcchHHHhhhccccccccchhhhhhhcCcCCChh
Confidence 4455677776 455555566677 78899999999777 6778999999999999999999999999976 2
Q ss_pred ------CCCHHHHHHHHHHhhhCCCccccC--CceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEE
Q 016606 261 ------GIACGENIIKECEEEAGIPRSISN--RARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQL 332 (386)
Q Consensus 261 ------GEs~~eAa~REl~EEaGL~~~~~~--~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~w 332 (386)
+..+..||+|-+.-|+||+.+.+. .+.+++.+.|...++..| -|....|.+-+-.++.+.|++.||.+++|
T Consensus 96 el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~w-GEhEiDYiL~~~~~~~~nPnpnEv~e~ry 174 (225)
T KOG0142|consen 96 ELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIW-GEHEIDYILFLVKDVTLNPNPNEVSEIRY 174 (225)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCc-ccceeeEEEEEeccCCCCCChhhhhHhhe
Confidence 235788999999999999998775 588999999987765333 24445555555567778888899999999
Q ss_pred EcHHHHHHHHHcC-CCCCCCcHHHHHHHHHH
Q 016606 333 MPVAHVANVIRRT-EFFKPNCSLAIIDFLFR 362 (386)
Q Consensus 333 v~~dEv~~~l~~~-~~fkpn~alVlldfl~R 362 (386)
++.+|+.++++.. .-|+|+-.++.-.|+++
T Consensus 175 vs~eelkel~~~~~~~~TPWfkli~~~~l~~ 205 (225)
T KOG0142|consen 175 VSREELKELVAKASAGFTPWFKLISENFLFK 205 (225)
T ss_pred ecHHHHHHHHhccccCCChHHHHHHHHHHHH
Confidence 9999999999874 24889988888888877
No 28
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.56 E-value=4.9e-14 Score=123.70 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+.++++++.+|... ..+|.|++ |||++++|||+++||+||++||||+.+.. ...++.+.+....+. ..+.+
T Consensus 22 ~~~~~vLL~~r~~~--~~~~~w~l-PgG~ve~gEt~~~aa~REl~EEtGl~~~~---~~~~~~~~~~~~~~~---~~~~~ 92 (142)
T cd04700 22 NERNDVLLVQEKGG--PKKGLWHI-PSGAVEDGEFPQDAAVREACEETGLRVRP---VKFLGTYLGRFDDGV---LVLRH 92 (142)
T ss_pred eCCCcEEEEEEcCC--CCCCeEEC-CceecCCCCCHHHHHHHHHHHhhCceeec---cEEEEEEEEEcCCCc---EEEEE
Confidence 33446777666443 35799976 59999999999999999999999999765 445555544333221 13345
Q ss_pred EEEEEcCC-CcccCCCCCceeeEEEEcHHHHHHHHHcCCCCC
Q 016606 309 CYDLKLPE-DFVPMNQDGEVESFQLMPVAHVANVIRRTEFFK 349 (386)
Q Consensus 309 vYdl~l~~-d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fk 349 (386)
+|.+.... ...+.. .+|+.+++|++++|+.+++.++ +.+
T Consensus 93 ~f~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g-~i~ 132 (142)
T cd04700 93 VWLAEPEGQTLAPKF-TDEIAEASFFSREDVAQLYAQG-QLR 132 (142)
T ss_pred EEEEEecCCccccCC-CCCEEEEEEECHHHhhhccccc-ccc
Confidence 56666533 223332 4699999999999999999886 454
No 29
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.55 E-value=2.7e-13 Score=116.51 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=83.5
Q ss_pred EEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeee
Q 016606 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYK 303 (386)
Q Consensus 224 ~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~ 303 (386)
+++..+ +++|+.||... .+++|. ++||+++.||++.+||.||++||+|+.... ...++...+.......
T Consensus 5 ~ii~~~--~~vLlv~r~~~---~~~~w~-~PgG~ve~gEs~~~aa~REl~EEtGl~~~~---~~~~~~~~~~~~~~~~-- 73 (134)
T cd03675 5 AVVERD--GRFLLVEEETD---GGLVFN-QPAGHLEPGESLIEAAVRETLEETGWHVEP---TALLGIYQWTAPDSDT-- 73 (134)
T ss_pred EEEEEC--CEEEEEEEccC---CCceEE-CCCccCCCCCCHHHHHHHHHHHHHCccccc---ceEEEEEEeecCCCCe--
Confidence 444434 37888888653 467886 569999999999999999999999998764 3344544444322111
Q ss_pred eEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHc
Q 016606 304 RDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRH 363 (386)
Q Consensus 304 ~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~Rh 363 (386)
..+.++|.+.+..+......++|+.++.|++++|+.++... ...|...-++-+++...
T Consensus 74 ~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--~~~~~~~~~i~~~l~~~ 131 (134)
T cd03675 74 TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--LRSPLVLRCIEDYLAGR 131 (134)
T ss_pred eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--hcCchHHHHHHHHHhcC
Confidence 12345666666543222234578999999999999998752 22344444555665443
No 30
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=5.6e-14 Score=117.89 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCcc-ccCCceeeEEEEEEeeCCCeeeeEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS-ISNRARPVGAVSYTDINGFSYKRDVI 307 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~-~~~~l~~vg~isy~~~~~~gi~~ev~ 307 (386)
+.++++++.||+.. +.|++ +||+++.|||+++||+||++||||+.+. . ...++.+.+.... ....+
T Consensus 9 ~~~~~vLL~~r~~~-----~~w~~-PgG~ve~gEt~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~~~----~~~~~ 75 (120)
T cd04680 9 DADGRVLLVRHTYG-----PGWYL-PGGGLERGETFAEAARRELLEELGIRLAVV---AELLGVYYHSASG----SWDHV 75 (120)
T ss_pred CCCCeEEEEEECCC-----CcEeC-CCCcCCCCCCHHHHHHHHHHHHHCCccccc---cceEEEEecCCCC----CceEE
Confidence 44558999888643 37875 5999999999999999999999999987 4 3455555443321 12456
Q ss_pred EEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHH
Q 016606 308 FCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
++|.+...... ...+++|+.+++|++++++.+++
T Consensus 76 ~~f~~~~~~~~-~~~~~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 76 IVFRARADTQP-VIRPSHEISEARFFPPDALPEPT 109 (120)
T ss_pred EEEEecccCCC-ccCCcccEEEEEEECHHHCcccC
Confidence 77777765432 13456899999999999997643
No 31
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=1.3e-13 Score=115.75 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=76.9
Q ss_pred EEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCC--e
Q 016606 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF--S 301 (386)
Q Consensus 224 ~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~--g 301 (386)
+++.++ +++++.+|+. ..++|.|+ ++||+++.||++++||+||+.||||+.+.. ...++.+.+....+. .
T Consensus 5 ~ii~~~--~~vLl~~r~~--~~~~~~w~-~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~ 76 (122)
T cd04673 5 AVVFRG--GRVLLVRRAN--PPDAGLWS-FPGGKVELGETLEQAALRELLEETGLEAEV---GRLLTVVDVIERDAAGRV 76 (122)
T ss_pred EEEEEC--CEEEEEEEcC--CCCCCeEE-CCCcccCCCCCHHHHHHHHHHHhhCcEeee---ceeEEEEEEeeccCCCcc
Confidence 344444 4788988875 34789997 569999999999999999999999999765 345555555443211 1
Q ss_pred eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHH
Q 016606 302 YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 302 i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
....+++.|.+....+- + ..++|+.+++|++++|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~-~-~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 77 EFHYVLIDFLCRYLGGE-P-VAGDDALDARWVPLDELAALS 115 (122)
T ss_pred ceEEEEEEEEEEeCCCc-c-cCCcccceeEEECHHHHhhCc
Confidence 12244566777654432 2 345789999999999998753
No 32
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.54 E-value=1.5e-13 Score=123.92 Aligned_cols=108 Identities=14% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeC---CCee-ee
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN---GFSY-KR 304 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~---~~gi-~~ 304 (386)
++.++||+.||+. + .++|+|++ +||+|+.|||+++||+||++||+||.+.... ..+++...+.+.. +..+ ..
T Consensus 26 ~~~g~VLL~kR~~-~-~~~g~W~l-PGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
T PRK15434 26 NSRGEFLLGKRTN-R-PAQGYWFV-PGGRVQKDETLEAAFERLTMAELGLRLPITA-GQFYGVWQHFYDDNFSGTDFTTH 101 (159)
T ss_pred CCCCEEEEEEccC-C-CCCCcEEC-CceecCCCCCHHHHHHHHHHHHHCCcccccc-ceEEEEEEeecccccCCCccceE
Confidence 5567999999974 2 47899985 6999999999999999999999999865321 3444544433321 1111 12
Q ss_pred EEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 305 DVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 305 ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.+.++|.+....+ .+..+++|+.+++|++++|+.+.
T Consensus 102 ~i~~~f~~~~~~g-~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 102 YVVLGFRLRVAEE-DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred EEEEEEEEEecCC-cccCChHHeeEEEEEeHHHhhhc
Confidence 3456777776543 24445679999999999999864
No 33
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=1e-13 Score=118.38 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeC-CCeeeeEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN-GFSYKRDVI 307 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~-~~gi~~ev~ 307 (386)
+.++++++++|+..+ ++|+|+. |||+++.||++.+||+||++||+|+.... +..++.+...+.. +... ..+.
T Consensus 10 ~~~~~vLL~~r~~~~--~~~~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~-~~~~ 82 (130)
T cd04681 10 NEDGELLVVRRAREP--GKGTLDL-PGGFVDPGESAEEALIREIREETGLKVTE---LSYLFSLPNTYPYGGMEY-DTLD 82 (130)
T ss_pred cCCCcEEEEEecCCC--CCCcEeC-CceeecCCCCHHHHHHHHHHHHhCCcccc---eeEEEeecceeeeCCcee-EEEE
Confidence 444589999997653 6899986 69999999999999999999999998864 4455544322221 1111 1233
Q ss_pred EEEEEEcCCCcccCCCCCceeeEEEEcHHHHH
Q 016606 308 FCYDLKLPEDFVPMNQDGEVESFQLMPVAHVA 339 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~ 339 (386)
+.|.+.+... .+..+.+|+.+++|++++++.
T Consensus 83 ~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 83 LFFVCQVDDK-PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEeCCC-CCcCChHHhheeEEecHHHCC
Confidence 4455666543 133345799999999999984
No 34
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.52 E-value=2.1e-13 Score=120.24 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred EEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC---
Q 016606 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING--- 299 (386)
Q Consensus 223 ~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~--- 299 (386)
.+.+. |.+++||+.||... .++|+|+ ++||+++.|||+.+||+||++||+|+.+...+ +..++.+.+.+...
T Consensus 16 ~~vI~-~~~g~vLl~~R~~~--p~~g~w~-lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~-~~~l~~~~~~~~~~~~~ 90 (144)
T cd03430 16 DLIVE-NEDGQYLLGKRTNR--PAQGYWF-VPGGRIRKNETLTEAFERIAKDELGLEFLISD-AELLGVFEHFYDDNFFG 90 (144)
T ss_pred EEEEE-eCCCeEEEEEccCC--CCCCcEE-CCCceecCCCCHHHHHHHHHHHHHCCCccccc-ceEEEEEEEEecccccc
Confidence 33443 44568999998753 4799998 56999999999999999999999999887542 34555554432211
Q ss_pred Cee-eeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 300 FSY-KRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 300 ~gi-~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.+. ...+.++|.+....+. +..+++|+.+++|++++++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 91 DDFSTHYVVLGYVLKLSSNE-LLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred CCCccEEEEEEEEEEEcCCc-ccCCchhccEeEEecHHHHhcC
Confidence 111 1234455666655432 2345679999999999999864
No 35
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=2.3e-13 Score=115.97 Aligned_cols=105 Identities=23% Similarity=0.393 Sum_probs=74.2
Q ss_pred EEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeee
Q 016606 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKR 304 (386)
Q Consensus 225 yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ 304 (386)
++..|+ +|+++||+. .++|. +|||+++.||++.+||+||+.||||+..... ..++...+.+........
T Consensus 7 vi~~~~--~vLl~~~~~-----~~~w~-lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~ 75 (126)
T cd04688 7 IIIHNG--KLLVQKNPD-----ETFYR-PPGGGIEFGESSEEALIREFKEELGLKIEIT---RLLGVVENIFTYNGKPGH 75 (126)
T ss_pred EEEECC--EEEEEEeCC-----CCeEE-CCCccccCCCCHHHHHHHHHHHHhCCceecc---eeeEEEEEeeccCCcccE
Confidence 334444 899999865 46786 5699999999999999999999999987653 344544433222211123
Q ss_pred EEEEEEEEEcCCCcccC------CCCCceeeEEEEcHHHHHH
Q 016606 305 DVIFCYDLKLPEDFVPM------NQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 305 ev~~vYdl~l~~d~~p~------~~dgEV~~f~wv~~dEv~~ 340 (386)
.+.++|.+.++.+.... .+++|+.++.|++++++..
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 76 EIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred EEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 56678888876543221 2457999999999999884
No 36
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.2e-13 Score=117.84 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEE----EEeeCCCeeee
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS----YTDINGFSYKR 304 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~is----y~~~~~~gi~~ 304 (386)
+.++++|+++|+.. |.|++ +||+++.|||+.+||+||++||||+..... ..++.+. |........ .
T Consensus 16 ~~~~~vLL~~r~~~-----~~w~~-PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~---~~~~~~~~~~~~~~~~~~~~-~ 85 (132)
T cd04677 16 NEQGEVLLQKRSDT-----GDWGL-PGGAMELGESLEETARRELKEETGLEVEEL---ELLGVYSGKEFYVKPNGDDE-Q 85 (132)
T ss_pred eCCCCEEEEEecCC-----CcEEC-CeeecCCCCCHHHHHHHHHHHHhCCeeeee---EEEEEecCCceeecCCCCcE-E
Confidence 44458999999753 78975 699999999999999999999999988653 3333321 211111111 1
Q ss_pred EEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 305 DVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 305 ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
..+.+|.+....+..+..+++|+.+++|++++|+.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 86 YIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred EEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 233333333322223345678999999999999987664
No 37
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=4e-13 Score=113.72 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=74.8
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+++++++++||+..+..++|+|+. +||+++.||++.+||+||+.||+|+.+.... .++...+.... +....+.+
T Consensus 10 ~~~~~iLl~kr~~~~~~~~g~w~~-PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~---~~~~~~~~~~~--~~~~~~~~ 83 (129)
T cd04699 10 KDVGRILILKRSKDERTAPGKWEL-PGGKVEEGETFEEALKREVYEETGLTVTPFL---RYPSTVTHEDS--GVYNVIYL 83 (129)
T ss_pred CCCCcEEEEEecCCCCCCCCcCcC-CccCccCCCCHHHHHHHHHHHhhCcEEEeee---eeeEEEEEcCC--CEEEEEEE
Confidence 444689999999887778999986 6999999999999999999999999876532 22222222111 11223445
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
+|.+..... +..++.|+.+++|++++++..+...
T Consensus 84 ~~~~~~~~~--~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 84 VFVCEALSG--AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEeeecCC--cccCChhheEEEEecHHHhhhhhcc
Confidence 555543322 2234568999999999999665543
No 38
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.50 E-value=3e-13 Score=119.02 Aligned_cols=107 Identities=15% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEE----EEEEeeCC---Ce
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGA----VSYTDING---FS 301 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~----isy~~~~~---~g 301 (386)
+.++++|++||+..+ |+|+. +||+++.||++.+||+||++|||||.+...+ .++. ++|..... ..
T Consensus 12 ~~~~~vLL~~r~~~~----~~W~~-PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~---~l~~~~~~~~y~~~~~~~~~~ 83 (147)
T cd03671 12 NEDGKVFVGRRIDTP----GAWQF-PQGGIDEGEDPEQAALRELEEETGLDPDSVE---IIAEIPDWLRYDLPPELKLKI 83 (147)
T ss_pred eCCCEEEEEEEcCCC----CCEEC-CcCCCCCCcCHHHHHHHHHHHHHCCCcCceE---EEEEcCCeeEeeChhhhhccc
Confidence 444699999998765 89985 6999999999999999999999999976532 3332 34443211 00
Q ss_pred ----eeeEEEEEEEEEcC---CCcccCC-CCCceeeEEEEcHHHHHHHHH
Q 016606 302 ----YKRDVIFCYDLKLP---EDFVPMN-QDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 302 ----i~~ev~~vYdl~l~---~d~~p~~-~dgEV~~f~wv~~dEv~~~l~ 343 (386)
......++|.+.+. .++...+ .++|+.+++|++++|+.+++.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 84 WGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred cCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 11122233333332 2333333 267999999999999999874
No 39
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.50 E-value=3.3e-13 Score=115.09 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=72.4
Q ss_pred EEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCc-eeeEEEEEEeeCCCeee
Q 016606 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRA-RPVGAVSYTDINGFSYK 303 (386)
Q Consensus 225 yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l-~~vg~isy~~~~~~gi~ 303 (386)
+...+++.++|+.||+. |.|+. +||+++.|||+.+||+||++||+||.......+ .......+.. .+ .
T Consensus 10 ~~~~~~~~~vLl~~~~~------~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~---~ 78 (130)
T cd03428 10 YRRLNNEIEYLLLQASY------GHWDF-PKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV-RG---K 78 (130)
T ss_pred EEecCCCceEEEEEccC------CcCcC-CcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc-cC---c
Confidence 33335566788888875 78875 699999999999999999999999998764321 1111122211 11 1
Q ss_pred eEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 304 RDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 304 ~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
....+.|.+.+..+..+.++ +|+.++.|++++++.+++.
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 79 LKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcC
Confidence 23445566665533334444 7999999999999998764
No 40
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.50 E-value=4.1e-13 Score=115.67 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=74.1
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++|+.+|+..+ ++|.|. ++||+++.||++.+||+||+.||+||.... ...++.+.+...... .....++|.
T Consensus 12 ~~vLL~~r~~~~--~~~~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~--~~~~~~~f~ 83 (137)
T cd03427 12 DKVLLLNRKKGP--GWGGWN-GPGGKVEPGETPEECAIRELKEETGLTIDN---LKLVGIIKFPFPGEE--ERYGVFVFL 83 (137)
T ss_pred CEEEEEEecCCC--CCCeEe-CCceeCCCCCCHHHHHHHHHHHhhCeEeec---ceEEEEEEEEcCCCC--cEEEEEEEE
Confidence 489999998765 889996 569999999999999999999999998875 345566666543311 235567777
Q ss_pred EEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 312 LKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 312 l~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
+....+. +. ...|..+++|++++|+.++
T Consensus 84 ~~~~~~~-~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 84 ATEFEGE-PL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred ECCcccc-cC-CCCccccceEEcHhhcccc
Confidence 7654432 22 2345678999999998764
No 41
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=3.9e-13 Score=115.84 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=72.7
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
++++++++.+|+.. ++|.|. .+||+++.|||+.+||+||++||+||.+.... ..+.+.+.+.... -...+.+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~---~~~~~~~~~~~~~-~~~~~~~ 82 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWC-HVAGGVEAGETAWQAALRELKEETGISLPELY---NADYLEQFYEAND-NRILMAP 82 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEE-CCcccccCCCCHHHHHHHHHHHHhCCCccccc---cccceeeEeecCC-ceEEEEE
Confidence 55678999999754 789996 57999999999999999999999999876432 1111222222111 1123445
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
+|.+.....-...+ ++|+.+++|++++++.+++.
T Consensus 83 ~f~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 83 VFVGFVPPHQEVVL-NHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred EEEEEecCCCcccc-CchhcccEecCHHHHHHhcC
Confidence 56555543222223 46999999999999998753
No 42
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=4.5e-13 Score=114.43 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=74.2
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
|.++++|+++|+.. .++|+|+. +||+++.|||+.+||+||++||+|+.+.. ...++.+...... .+. ..+..
T Consensus 11 ~~~~~iLl~~r~~~--~~~~~w~~-PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~---~~~~~~~~~~~~~-~~~-~~~~~ 82 (129)
T cd04678 11 NPKGKVLLGKRKGS--HGAGTWAL-PGGHLEFGESFEECAAREVLEETGLHIEN---VQFLTVTNDVFEE-EGK-HYVTI 82 (129)
T ss_pred CCCCeEEEEeccCC--CCCCeEEC-CcccccCCCCHHHHHHHHHHHHhCCcccc---eEEEEEEeEEeCC-CCc-EEEEE
Confidence 55569999999864 47899985 69999999999999999999999998765 3444544433221 111 13445
Q ss_pred EEEEEcCCCc-ccCC-CCCceeeEEEEcHHHHHHH
Q 016606 309 CYDLKLPEDF-VPMN-QDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 309 vYdl~l~~d~-~p~~-~dgEV~~f~wv~~dEv~~~ 341 (386)
+|.+....+. .+.. +.+|+.+++|++++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 83 FVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 5666655432 2221 4578999999999999875
No 43
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=4.3e-13 Score=114.29 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=72.6
Q ss_pred EEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCC-e
Q 016606 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF-S 301 (386)
Q Consensus 223 ~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~-g 301 (386)
.+++. +.++++++.||.. ++|+|.+ +||+++.|||+.+||+||++||+||.+.... ..+...+.+.... .
T Consensus 6 ~~~i~-~~~~~iLL~r~~~----~~~~w~l-PGG~ve~gEs~~~aa~REl~EEtGl~~~~~~---~~~~~~~~~~~~~~~ 76 (125)
T cd04696 6 GALIY-APDGRILLVRTTK----WRGLWGV-PGGKVEWGETLEEALKREFREETGLKLRDIK---FAMVQEAIFSEEFHK 76 (125)
T ss_pred EEEEE-CCCCCEEEEEccC----CCCcEeC-CceeccCCCCHHHHHHHHHHHHhCCcccccc---eEEEEEEeccCCCCC
Confidence 34444 4445899998752 6799975 6999999999999999999999999887543 3333333321111 0
Q ss_pred eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 302 YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 302 i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
....+++.|.+..... .+.. ++|+.+++|++++|+.++
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 77 PAHFVLFDFFARTDGT-EVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred ccEEEEEEEEEEecCC-cccC-CcccceeEEECHHHHhcC
Confidence 1123445566665432 2333 468999999999999764
No 44
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.48 E-value=7.9e-13 Score=112.47 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=70.3
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++++.+|.. .+.|. +|||+++.||++.+||+||++||||+.... ..+++.+.+.+.........+.++|.
T Consensus 12 ~~vLlv~~~~-----~~~~~-lPGG~ve~gEt~~~aa~REl~EEtGl~~~~---~~~l~~~~~~~~~~~~~~~~~~~~f~ 82 (125)
T cd04689 12 NKVLLARVIG-----QPHYF-LPGGHVEPGETAENALRRELQEELGVAVSD---GRFLGAIENQWHEKGVRTHEINHIFA 82 (125)
T ss_pred CEEEEEEecC-----CCCEE-CCCCcCCCCCCHHHHHHHHHHHHhCceeec---cEEEEEEeeeeccCCceEEEEEEEEE
Confidence 3788888743 25686 469999999999999999999999998865 45666666554433333345667787
Q ss_pred EEcCCCc--ccCCCCCceeeEEEEcHHHH
Q 016606 312 LKLPEDF--VPMNQDGEVESFQLMPVAHV 338 (386)
Q Consensus 312 l~l~~d~--~p~~~dgEV~~f~wv~~dEv 338 (386)
+..+.+. .....++|+.+++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el 111 (125)
T cd04689 83 VESSWLASDGPPQADEDHLSFSWVPVSDL 111 (125)
T ss_pred EEcccccccCCccCccceEEEEEccHHHc
Confidence 7765321 11223567999999999995
No 45
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.46 E-value=7.2e-13 Score=110.37 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=78.7
Q ss_pred eEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCC
Q 016606 221 PLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF 300 (386)
Q Consensus 221 Hl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~ 300 (386)
++.+.+..++++++|+++|+..+ .++|+|+. +||+++.||++.++|.||+.||+|+.... ...++.+.+.... .
T Consensus 2 ~~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~-p~G~~~~~e~~~~~a~Re~~EE~g~~~~~---~~~~~~~~~~~~~-~ 75 (124)
T cd03425 2 EVVAAIIIDDDGRILIAQRPAGK-HLGGLWEF-PGGKVEPGETPEQALVRELREELGIEVEV---GELLATVEHDYPD-K 75 (124)
T ss_pred eEEEEEEECCCCEEEEEEeCCCC-CCCCeEeC-CCcccCCCCCHHHHHHHHHHHhhCcEEec---cceEEEEEeeCCC-C
Confidence 34444444555799999998876 79999986 69999999999999999999999998764 3456666665532 1
Q ss_pred eeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 301 SYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 301 gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
...+++|.+....+. . .+.|..++.|++++++.+
T Consensus 76 ---~~~~~~~~~~~~~~~-~--~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 76 ---RVTLHVFLVELWSGE-P--QLLEHQELRWVPPEELDD 109 (124)
T ss_pred ---eEEEEEEEEeeeCCC-c--ccccCceEEEeeHHHccc
Confidence 233566666554321 1 245788999999999975
No 46
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=1.4e-12 Score=111.31 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=68.8
Q ss_pred EEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCee
Q 016606 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSY 302 (386)
Q Consensus 223 ~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi 302 (386)
.+++. ++++++|+.+|... ++|+|.+ +||+++.|||+.+||+||++||+||..... ..++...+ +.....
T Consensus 6 ~~~v~-~~~~~vLl~~r~~~---~~~~w~~-PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~---~~~~~~~~-~~~~~~- 75 (127)
T cd04670 6 GGLVL-NEKNEVLVVQERNK---TPNGWKL-PGGLVDPGEDIFDGAVREVLEETGIDTEFV---SVVGFRHA-HPGAFG- 75 (127)
T ss_pred EEEEE-cCCCeEEEEEccCC---CCCcEEC-CCccCCCCCCHHHHHHHHHHHHHCCCccee---EEEEEEec-CCCCcC-
Confidence 34444 44568888776443 7899986 599999999999999999999999987542 23332221 111111
Q ss_pred eeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 303 KRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 303 ~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
...+.|++.+. +.+..+..+++|+.+++|++++++.+
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 76 KSDLYFICRLK-PLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred ceeEEEEEEEc-cCcCcCCCChhhhheeEEEcHHHHhc
Confidence 11223333332 11223445577999999999999954
No 47
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.43 E-value=1.1e-12 Score=113.59 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
++++++++.||+.. .+|.|+ ++||+++.||++++||+||++|||||.... +..++...+... ..+.+
T Consensus 9 ~~~~~vLL~~r~~~---~~~~w~-lPgG~ie~gEt~~~aA~REl~EEtGl~~~~---~~~l~~~~~~~~------~~~~~ 75 (131)
T cd03429 9 DGGDRILLARQPRF---PPGMYS-LLAGFVEPGESLEEAVRREVKEEVGIRVKN---IRYVGSQPWPFP------SSLML 75 (131)
T ss_pred eCCCEEEEEEecCC---CCCcCc-CCcccccCCCCHHHHHhhhhhhccCceeee---eEEEeecCCCCC------ceEEE
Confidence 45568999888642 268897 569999999999999999999999999864 445444332221 23445
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.|.+....+ .+..+++|+.++.|++++++.++
T Consensus 76 ~f~~~~~~~-~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 76 GFTAEADSG-EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEEcCC-cccCCchhhhccEeecHHHHhhc
Confidence 566665532 34456679999999999999997
No 48
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.43 E-value=2.9e-12 Score=111.63 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=65.5
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeE------EEEEEeeCCCe-e-e
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG------AVSYTDINGFS-Y-K 303 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg------~isy~~~~~~g-i-~ 303 (386)
+++|+.||+. .|.|. +|||+++.||++++||+||++|||||.+.... ..+ ...+......+ . .
T Consensus 15 ~~vLLv~r~~-----~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (138)
T cd03674 15 GKVLLTHHRK-----LGSWL-QPGGHIDPDESLLEAALRELREETGIELLGLR---PLSVLVDLDVHPIDGHPKRGVPGH 85 (138)
T ss_pred CeEEEEEEcC-----CCcEE-CCceecCCCCCHHHHHHHHHHHHHCCCcccce---eccccccceeEeecCCCCCCCCCc
Confidence 6888888864 37885 57999999999999999999999999865432 221 11111111110 0 1
Q ss_pred eEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 304 RDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 304 ~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
..+.++|.+.++.+.....+++|+.+++|++++++..+
T Consensus 86 ~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 86 LHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL 123 (138)
T ss_pred EEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc
Confidence 12334576665432211135679999999999999764
No 49
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=3.8e-12 Score=108.83 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=69.8
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeC----CCeeeeEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN----GFSYKRDVI 307 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~----~~gi~~ev~ 307 (386)
+++++.||... .++.|+ ++||+++.|||+++||+||+.||+|+.+...+ ..+...|.... ...-...+.
T Consensus 12 ~~vLl~~r~~~---~~~~~~-lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~---~~~~~~~~~~~~~~~~~~~~~~i~ 84 (128)
T cd04687 12 DKILLIKHHDD---GGVWYI-LPGGGQEPGETLEDAAHRECKEEIGIDVEIGP---LLFVREYIGHNPTSELPGHFHQVE 84 (128)
T ss_pred CEEEEEEEEcC---CCCeEE-CCCcccCCCCCHHHHHHHHHHHHHCCccccCc---EEEEEEEeccCccccCCCceeEEE
Confidence 48999888643 246786 56999999999999999999999999987543 22333443211 111123566
Q ss_pred EEEEEEcCCCcc--c-CCCCCceeeEEEEcHHHHHHH
Q 016606 308 FCYDLKLPEDFV--P-MNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 308 ~vYdl~l~~d~~--p-~~~dgEV~~f~wv~~dEv~~~ 341 (386)
++|.+....+.. . ...+.|..+++|++++++.++
T Consensus 85 ~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 85 LMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 778888765421 1 123456679999999999765
No 50
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.42 E-value=4.7e-12 Score=108.79 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC-CeeeeEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING-FSYKRDVI 307 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~-~gi~~ev~ 307 (386)
+++.++|+-+|... |.|. +|||+++.|||+.+||+||+.|||||..... +..+|.+.|..... .+.. ..+
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~-~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~--~~~l~~~~~~~~~~~~~~~-~~~ 82 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWI-VPKGGPEKDESPAEAAAREAWEEAGVRGKIG--KRPLGRFEYRKRSKNRPPR-CEV 82 (122)
T ss_pred CCceEEEEEEecCC-----CeEE-CCCCCcCCCCCHHHHHHHHHHHHhCCccccc--ceEEEEEEeeecCCCCCce-EEE
Confidence 34567777776532 7896 5699999999999999999999999987553 25777777665431 1112 234
Q ss_pred EEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 308 FCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
++|.+...... ....+.|+.+++|++++|+.+++..
T Consensus 83 ~~f~~~~~~~~-~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 83 AVFPLEVTEEL-DEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEEeccc-cCCcccCceEEEEecHHHHHHhcCC
Confidence 55655554322 1223457889999999999998754
No 51
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.42 E-value=3e-12 Score=118.54 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCC-CCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVI 307 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aG-Es~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~ 307 (386)
+++..+++.||+..-+.++|.|. +|||++++| |++++||+||++||+|+.++. +..+|.+...... .++. +
T Consensus 41 ~~~~~vLl~~R~~~~r~~~G~~~-~PGG~~e~~de~~~~tA~REl~EEtGl~~~~---~~~lg~l~~~~~~-~~~~---~ 112 (190)
T PRK10707 41 RPQPTLLLTQRSIHLRKHAGQVA-FPGGAVDPTDASLIATALREAQEEVAIPPSA---VEVIGVLPPVDSS-TGYQ---V 112 (190)
T ss_pred CCCCEEEEEEeCCcccCCCCcEE-cCCcccCCCcccHHHHHHHHHHHHHCCCccc---eEEEEEeeeeecc-CCcE---E
Confidence 44568999999987777899996 679999985 689999999999999998765 5566766533322 2222 2
Q ss_pred EEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHH
Q 016606 308 FCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
..|.+.+..+..+.++++|+.+..|+|++++.++.
T Consensus 113 ~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 113 TPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 22333334343456677899999999999998875
No 52
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.42 E-value=2.5e-12 Score=114.99 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=71.3
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEE----EEEEeeC------
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGA----VSYTDIN------ 298 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~----isy~~~~------ 298 (386)
+.++++|++||+. .||.|+++ ||+++.||++.+||.||+.||+|+..... ..++. +.|.+..
T Consensus 17 ~~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~y~~~~~~~~~~ 88 (156)
T PRK00714 17 NRQGQVFWGRRIG----QGHSWQFP-QGGIDPGETPEQAMYRELYEEVGLRPEDV---EILAETRDWLRYDLPKRLVRRS 88 (156)
T ss_pred ecCCEEEEEEEcC----CCCeEECC-cccCCCCcCHHHHHHHHHHHHhCCCccce---EEEEEcCCeEEecCcHHHhhcc
Confidence 4445899999974 26899765 99999999999999999999999987643 33333 3333221
Q ss_pred CCeeeeEEEEEEEEEcC---CCcccCC-CCCceeeEEEEcHHHHHHHHH
Q 016606 299 GFSYKRDVIFCYDLKLP---EDFVPMN-QDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 299 ~~gi~~ev~~vYdl~l~---~d~~p~~-~dgEV~~f~wv~~dEv~~~l~ 343 (386)
..++..+..+.|.+... ..+.+.+ .++|+.+++|++++|+.+++.
T Consensus 89 ~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 89 KGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred CCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch
Confidence 11121122344545442 1222322 346999999999999998764
No 53
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.41 E-value=3e-12 Score=108.17 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=74.5
Q ss_pred EEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCe
Q 016606 222 LNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS 301 (386)
Q Consensus 222 l~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~g 301 (386)
+.+.+..++++++|++||+.. ..++|+|+. +||+++.||++.+|++||+.||+|+.... ...++.+.+.+.. ..
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~-~~~~g~w~~-PgG~~~~gE~~~~a~~Re~~EE~gl~~~~---~~~~~~~~~~~~~-~~ 79 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAAD-AHMAGKWEF-PGGKIEAGETPEQALIRELQEEVGITVQH---ATLFEKLEYEFPD-RH 79 (129)
T ss_pred EEEEEEECCCCEEEEEEecCC-CCCCCeEEC-CceecCCCCCHHHHHHHHHHHHHCCceec---ceEEEEEEeeCCC-cE
Confidence 334444466679999999875 458999985 69999999999999999999999998654 3345555555432 21
Q ss_pred eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 302 YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 302 i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
+ .+++|.+....+ .+.+.|+.+++|++++++..
T Consensus 80 ~---~~~~~~~~~~~~---~~~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 80 I---TLWFWLVESWEG---EPWGKEGQPGRWVSQVALNA 112 (129)
T ss_pred E---EEEEEEEEEECC---ccCCccCCccEEecHHHCcc
Confidence 2 234455543322 12245788899999999875
No 54
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.41 E-value=3.2e-12 Score=105.26 Aligned_cols=104 Identities=18% Similarity=0.333 Sum_probs=76.1
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
++++++++.+|+.. ++|+|+. +||+++.||++.++|+||+.||+|+.... ....+.+.+..... ......+
T Consensus 9 ~~~~~ill~kr~~~---~~~~~~~-p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~---~~~~~~~~~~~~~~--~~~~~~~ 79 (123)
T cd02883 9 DEDGRVLLVRRADS---PGGLWEL-PGGGVEPGETLEEAAIREVREETGLDVDV---LRLLGVYEVESPDE--GEHAVVF 79 (123)
T ss_pred CCCCCEEEEEEcCC---CCCeEeC-CcccccCCCCHHHHHHHHHHHhhCcccee---eeEEEEEEeeccCC--CceEEEE
Confidence 44468999999876 8899975 69999999999999999999999998753 23444455544321 1235567
Q ss_pred EEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 309 vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
+|.+..+.+.....++.|+.+++|++++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 80 VFLARLVGGEPTLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence 787776543222245678999999999999873
No 55
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=2e-12 Score=111.09 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
+.++++|+.||... .++|+|.. +||+++.||++.+||+||++||||+.....+ .++.. .. .. ..+.+
T Consensus 9 ~~~~~vLl~~r~~~--~~~~~w~l-PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~---~~~~~---~~-~~---~~~~~ 75 (123)
T cd04671 9 NNQGEVLLIQEAKR--SCRGKWYL-PAGRMEPGETIEEAVKREVKEETGLDCEPTT---LLSVE---EQ-GG---SWFRF 75 (123)
T ss_pred cCCCEEEEEEecCC--CCCCeEEC-ceeecCCCCCHHHHHHHHHHHHHCCeeecce---EEEEE---cc-CC---eEEEE
Confidence 55568999998743 46899985 5999999999999999999999999886533 33321 11 11 13456
Q ss_pred EEEEEcCCC-cccC-CCCCceeeEEEEcHHHHHH
Q 016606 309 CYDLKLPED-FVPM-NQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 309 vYdl~l~~d-~~p~-~~dgEV~~f~wv~~dEv~~ 340 (386)
+|.+...++ .... .+++|+.+++|++++|+..
T Consensus 76 ~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPL 109 (123)
T ss_pred EEEEEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence 676765432 2211 2356899999999999943
No 56
>PLN02325 nudix hydrolase
Probab=99.40 E-value=4e-12 Score=112.23 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=70.5
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
++||++||+... .-|+|. ++||+++.||++.+||+||++|||||.+.. ...++.+.+...........+.++|.
T Consensus 20 ~~vLL~rr~~~~--~~g~W~-lPGG~ve~gEs~~~aa~REv~EEtGl~v~~---~~~l~~~~~~~~~~~~~~~~i~~~f~ 93 (144)
T PLN02325 20 NSVLLGRRRSSI--GDSTFA-LPGGHLEFGESFEECAAREVKEETGLEIEK---IELLTVTNNVFLEEPKPSHYVTVFMR 93 (144)
T ss_pred CEEEEEEecCCC--CCCeEE-CCceeCCCCCCHHHHHHHHHHHHHCCCCcc---eEEEEEecceeecCCCCcEEEEEEEE
Confidence 489999997642 237896 569999999999999999999999999875 44555554433221111123445566
Q ss_pred EEcCCC-ccc-CCCCCceeeEEEEcHHHHHHH
Q 016606 312 LKLPED-FVP-MNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 312 l~l~~d-~~p-~~~dgEV~~f~wv~~dEv~~~ 341 (386)
+....+ ..+ ..+.+|+.+++|++++++...
T Consensus 94 ~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 94 AVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 655332 222 234457889999999999864
No 57
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=4.6e-12 Score=110.54 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=73.5
Q ss_pred eeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEE--EEe
Q 016606 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS--YTD 296 (386)
Q Consensus 219 gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~is--y~~ 296 (386)
++++..+ +.+++|+++||...+..+++.|+. +||+++.||++.+||.||+.||+|+..... ...+.... |.+
T Consensus 2 ~~~~~i~---~~~g~vLl~r~~~~~~~~~~~w~~-PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~--~~~~~~~~~~f~~ 75 (133)
T cd04685 2 AARVVLL---DPDDRVLLLRGDDPDSPGPDWWFT-PGGGVEPGESPEQAARRELREETGITVADL--GPPVWRRDAAFTF 75 (133)
T ss_pred eEEEEEE---cCCCeEEEEEEeCCCCCCCCEEEC-CcCCCCCCCCHHHHHHHHHHHHHCCccccc--cceEEEEEEEEEe
Confidence 3455444 345589999988765457889975 699999999999999999999999998322 12222222 222
Q ss_pred eCCCeeeeEEEEEEEEEcCC-Cccc-C---CCCCceeeEEEEcHHHHHHH
Q 016606 297 INGFSYKRDVIFCYDLKLPE-DFVP-M---NQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 297 ~~~~gi~~ev~~vYdl~l~~-d~~p-~---~~dgEV~~f~wv~~dEv~~~ 341 (386)
....+. ...+.|.+..+. +... . ...+++.+++|++++|+.+.
T Consensus 76 ~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 76 LGVDGR--QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred cCccce--eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 221122 233456665543 1111 1 12245778999999998874
No 58
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.39 E-value=9.7e-12 Score=106.83 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=73.7
Q ss_pred eeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC
Q 016606 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING 299 (386)
Q Consensus 220 VHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~ 299 (386)
+++.+.+..+ ++++|+.||...+ .++|+|.. +||+++.||++.+|++||+.||+|+.+... .+++.+.+....
T Consensus 4 ~~~~~~ii~~-~~~vLL~~R~~~~-~~~g~w~~-PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~---~~~~~~~~~~~~- 76 (135)
T PRK10546 4 IDVVAAIIER-DGKILLAQRPAHS-DQAGLWEF-AGGKVEPGESQPQALIRELREELGIEATVG---EYVASHQREVSG- 76 (135)
T ss_pred EEEEEEEEec-CCEEEEEEccCCC-CCCCcEEC-CcccCCCCCCHHHHHHHHHHHHHCCccccc---eeEEEEEEecCC-
Confidence 3444444433 3489999997654 58999975 599999999999999999999999997653 344555544322
Q ss_pred CeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 300 FSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 300 ~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.. -.+++|.+....+ .+...|..+++|++++++.++
T Consensus 77 ~~---~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 77 RR---IHLHAWHVPDFHG---ELQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred cE---EEEEEEEEEEecC---cccccccceeEEcCHHHcccC
Confidence 21 2234555543221 112346788999999999864
No 59
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=5.3e-12 Score=106.25 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=69.0
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEE-----EEeeCCCeee
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS-----YTDINGFSYK 303 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~is-----y~~~~~~gi~ 303 (386)
++++++|+.||+.. |+|+. +||+++.||++++||+||++||+|+..... ..+|.+. +.+..+ ...
T Consensus 11 ~~~~~vLl~~r~~~-----~~w~l-PgG~v~~~E~~~~aa~REl~EE~Gl~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 80 (129)
T cd04676 11 DDEGRVLLIRRSDN-----GLWAL-PGGAVEPGESPADTAVREVREETGLDVEVT---GLVGIYTGPVHVVTYPNG-DVR 80 (129)
T ss_pred CCCCeEEEEEecCC-----CcEEC-CeeccCCCCCHHHHHHHHHHHHhCceeEee---EEEEEeecccceeecCCC-CcE
Confidence 55568999999764 89985 699999999999999999999999987643 2222211 111111 112
Q ss_pred eEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 304 RDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 304 ~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
..+.+.|.+....+ .+...+.|+.+++|++++++.++
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 81 QYLDITFRCRVVGG-ELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEEEEEEEEEeeCC-eecCCCCceeEEEEEChhhCccc
Confidence 23445555554432 12235678999999999998764
No 60
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=9.2e-12 Score=104.40 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=69.5
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vY 310 (386)
++++++.||.. .|.|. ++||+++.||++++||+||++||||+..... .+..++.+.+......+ .....++|
T Consensus 11 ~~~vLl~~r~~-----~~~w~-~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~f 82 (118)
T cd04690 11 DGRVLLVRKRG-----TDVFY-LPGGKIEAGETPLQALIRELSEELGLDLDPD-SLEYLGTFRAPAANEPG-VDVRATVY 82 (118)
T ss_pred CCeEEEEEECC-----CCcEE-CCCCccCCCCCHHHHHHHHHHHHHCCccChh-heEEEEEEecccccCCC-cEEEEEEE
Confidence 34888877753 36786 5699999999999999999999999987642 25566655543222111 22455777
Q ss_pred EEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 311 DLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 311 dl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
.+..... +. .++|+.+++|++++|+..
T Consensus 83 ~~~~~~~--~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 83 VAELTGE--PV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEcccCC--cC-CCchhhccEEecHHHccc
Confidence 7776542 33 346999999999999854
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.35 E-value=2.5e-11 Score=111.40 Aligned_cols=111 Identities=16% Similarity=0.051 Sum_probs=76.0
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vY 310 (386)
++++++.|+... ...++.|++ |||+++.||++++||+||+.||||+.+.. +..+|.+.... +...+.+++|
T Consensus 58 ~~~vlLvrq~r~-~~~~~~~el-PaG~ve~gE~~~~aA~REl~EEtG~~~~~---l~~l~~~~~~~----~~~~~~~~~f 128 (185)
T PRK11762 58 DDTLLLIREYAA-GTERYELGF-PKGLIDPGETPLEAANRELKEEVGFGARQ---LTFLKELSLAP----SYFSSKMNIV 128 (185)
T ss_pred CCEEEEEEeecC-CCCCcEEEc-cceeCCCCCCHHHHHHHHHHHHHCCCCcc---eEEEEEEecCC----CccCcEEEEE
Confidence 346666665432 345678975 69999999999999999999999999865 55666543321 2223455666
Q ss_pred EEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCC
Q 016606 311 DLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPN 351 (386)
Q Consensus 311 dl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn 351 (386)
.+..........++.|..+..|+|++|+.+++.++ .++..
T Consensus 129 ~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g-~i~d~ 168 (185)
T PRK11762 129 LAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP-DFSEA 168 (185)
T ss_pred EEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC-CCCcH
Confidence 55532221123356778899999999999999987 46533
No 62
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.4e-11 Score=104.77 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=68.7
Q ss_pred EEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEE-eeCCCee
Q 016606 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT-DINGFSY 302 (386)
Q Consensus 224 ~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~-~~~~~gi 302 (386)
+++.++ +++++.+|.. .|.|+. +||+++.||++.+||+||++||+|+..... ..++...+. +......
T Consensus 7 ~~i~~~--~~vLL~~~~~-----~~~w~~-PGG~ve~gEs~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 7 AAIFKD--GKILLVREKS-----DGLWSL-PGGWADVGLSPAENVVKEVKEETGLDVKVR---KLAAVDDRNKHHPPPQP 75 (123)
T ss_pred EEEEEC--CEEEEEEEcC-----CCcEeC-CccccCCCCCHHHHHHHHHHHHhCCeeeEe---EEEEEeccccccCCCCc
Confidence 344444 4777777743 488975 599999999999999999999999987432 233333221 1111011
Q ss_pred eeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHH
Q 016606 303 KRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342 (386)
Q Consensus 303 ~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l 342 (386)
...+.+.|.+..... .+.+. +|+.+++|++++++.++.
T Consensus 76 ~~~~~~~f~~~~~~~-~~~~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 76 YQVYKLFFLCEILGG-EFKPN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred eEEEEEEEEEEecCC-cccCC-CceeeeEEECHHHCcccc
Confidence 123445666666433 23333 689999999999987654
No 63
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.34 E-value=1.4e-11 Score=109.08 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred EEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeE
Q 016606 226 VEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRD 305 (386)
Q Consensus 226 v~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~e 305 (386)
+.++.++++|+.||.. ++.|++ +||+++.|||+.+||+||++||||+.+.... . ...|...... ..
T Consensus 8 i~~~~~~~vLLvr~~~-----~~~W~l-PGG~ve~gEs~~~AA~REl~EETGl~v~~~~---~--~~~~~~~~~~---~~ 73 (145)
T cd03672 8 ILNEDLDKVLLVKGWK-----SKSWSF-PKGKINKDEDDHDCAIREVYEETGFDISKYI---D--KDDYIELIIR---GQ 73 (145)
T ss_pred EEeCCCCEEEEEEecC-----CCCEEC-CCccCCCCcCHHHHHHHHHHHhhCccceecc---c--cceeeecccC---Cc
Confidence 3333335888888742 358975 6999999999999999999999999876421 1 1122211111 11
Q ss_pred EEEEEEEE-cCCCcccCCC-CCceeeEEEEcHHHHHHHHHc
Q 016606 306 VIFCYDLK-LPEDFVPMNQ-DGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 306 v~~vYdl~-l~~d~~p~~~-dgEV~~f~wv~~dEv~~~l~~ 344 (386)
.+++|.+. ++.+....++ ++|+.+++|++++++.+++.+
T Consensus 74 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 74 NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 22333332 2222222232 469999999999999999876
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.33 E-value=1.8e-11 Score=118.24 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=71.2
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
++||+.||...+ +|+|. ++||+++.|||+++||+||++||+||.+.. +.+++...+.+. ...++.|.
T Consensus 143 ~~iLL~rr~~~~---~g~ws-lPgG~vE~GEs~eeAa~REv~EEtGl~v~~---~~~~~s~~~~~p------~~lm~~f~ 209 (256)
T PRK00241 143 DEILLARHPRHR---NGVYT-VLAGFVEVGETLEQCVAREVMEESGIKVKN---LRYVGSQPWPFP------HSLMLGFH 209 (256)
T ss_pred CEEEEEEccCCC---CCcEe-CcccCCCCCCCHHHHhhhhhhhccCceeee---eEEEEeEeecCC------CeEEEEEE
Confidence 589999886542 68997 579999999999999999999999998764 455554433221 23456666
Q ss_pred EEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 312 LKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 312 l~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
+....+ .+..+++|+.+.+|++++|+..+
T Consensus 210 a~~~~~-~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 210 ADYDSG-EIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred EEecCC-cccCCcccEEEEEEECHHHCccc
Confidence 665432 24556789999999999998643
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=2.5e-11 Score=102.82 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=74.8
Q ss_pred EEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCe
Q 016606 222 LNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS 301 (386)
Q Consensus 222 l~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~g 301 (386)
+++.+..++++++|++||... ..+.|+|+. +||+++.||++.++++||+.||+|+.+... ..++.+.+.+.. .
T Consensus 6 ~~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~-Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~---~~~~~~~h~~~~-~- 78 (128)
T TIGR00586 6 IAVGIIRNENGEIIITRRADG-HMFAKLLEF-PGGKEEGGETPEQAVVRELEEEIGIPQHFS---EFEKLEYEFYPR-H- 78 (128)
T ss_pred EEEEEEECCCCEEEEEEEeCC-CCCCCeEEC-CCcccCCCCCHHHHHHHHHHHHHCCcceee---eEEEEEEEECCC-c-
Confidence 333444455568999999764 468999985 599999999999999999999999987542 234445444322 1
Q ss_pred eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 302 YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 302 i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
...+++|.+...+. .+. +.|..++.|++++++.+.
T Consensus 79 --~~~~~~~~~~~~~~-~~~--~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 79 --ITLWFWLLERWEGG-PPG--KEGQPEEWWVLVGLLADD 113 (128)
T ss_pred --EEEEEEEEEEEcCC-CcC--cccccccEEeCHHHCCcc
Confidence 23456676665432 122 345678899999998763
No 66
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=2.4e-11 Score=101.72 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=66.2
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++|+.+|.. |+|. +|||+++.||++.+||.||+.||+|+.... +..++.+ . ... ...++|.
T Consensus 11 ~~vLlv~r~~------~~w~-~PgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~~~~~--~--~~~----~~~~~f~ 72 (112)
T cd04667 11 GRVLLVRKSG------SRWA-LPGGKIEPGETPLQAARRELQEETGLQGLD---LLYLFHV--D--GGS----TRHHVFV 72 (112)
T ss_pred CEEEEEEcCC------CcEe-CCCCcCCCCCCHHHHHHHHHHHHhCCcccc---eEEEEEE--e--CCC----EEEEEEE
Confidence 4899998853 7897 569999999999999999999999998654 3343322 1 111 2345566
Q ss_pred EEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 312 LKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 312 l~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
+.+..+..+. ..+|+.+++|++++++.++..
T Consensus 73 ~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 73 ASVPPSAQPK-PSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred EEcCCcCCCC-CchheeEEEEecHHHhhhccc
Confidence 6555432222 357999999999999987543
No 67
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=2.2e-11 Score=103.76 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
++++++|+.+|.... .+.|. ++||+++.|||+.+||+||++||||+.+... ..++.+.+ .+ ...+
T Consensus 9 ~~~~~vLL~~r~~~~---~~~w~-lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~---~~~~~~~~---~~-----~~~~ 73 (121)
T cd04669 9 NDQGEILLIRRIKPG---KTYYV-FPGGGIEEGETPEEAAKREALEELGLDVRVE---EIFLIVNQ---NG-----RTEH 73 (121)
T ss_pred eCCCEEEEEEEecCC---CCcEE-CCceeccCCCCHHHHHHHHHHHhhCeeEeee---eEEEEEee---CC-----cEEE
Confidence 334588888886542 47886 5699999999999999999999999998542 23333333 11 1234
Q ss_pred EEEEEcCCC-ccc-------CCCCCceeeEEEEcHHHHHHH
Q 016606 309 CYDLKLPED-FVP-------MNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 309 vYdl~l~~d-~~p-------~~~dgEV~~f~wv~~dEv~~~ 341 (386)
+|.+....+ +.. ..++++..+++|++++++.++
T Consensus 74 ~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 74 YFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred EEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 455544221 111 112456778999999999864
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.29 E-value=2e-11 Score=105.92 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=70.7
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccC-CceeeEEEEEEeeCCC---eeeeEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN-RARPVGAVSYTDINGF---SYKRDV 306 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~-~l~~vg~isy~~~~~~---gi~~ev 306 (386)
+.++|+.||+.. ..|.|. +|||+++.|||+.+||+||+.||||+.....- ...+++.+.|.+..+. ......
T Consensus 12 ~~~~Llvk~~~~---~~g~W~-fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (132)
T cd04661 12 DTLVLLVQQKVG---SQNHWI-LPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAK 87 (132)
T ss_pred CcEEEEEEeecC---CCCeeE-CCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccE
Confidence 347777777543 258996 46999999999999999999999999765310 0012333444332211 001134
Q ss_pred EEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 307 IFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 307 ~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
+++|.+....+ .+.+ ..|+.++.|++++|+.+++.
T Consensus 88 ~~~f~~~~~~g-~~~~-~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 88 VFFFKARYMSG-QFEL-SQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred EEEEEEEEecC-cccc-CCCcceeEecCHHHHHhhcC
Confidence 67787776443 2232 36899999999999998764
No 69
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.29 E-value=7.3e-11 Score=110.29 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCC----CcccCCC
Q 016606 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPE----DFVPMNQ 323 (386)
Q Consensus 248 G~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~----d~~p~~~ 323 (386)
-.|+ +|||+++.||++++||+||+.||||+.+.. +.+++.+ . .+ .++..+.+++|.++... ......+
T Consensus 82 ~~lE-~PAG~vd~gE~p~~aA~REL~EETGy~a~~---~~~l~~~--~-~s-pg~~~e~~~~fla~~~~~~~~~~~~~~d 153 (202)
T PRK10729 82 WLLE-MVAGMIEEGESVEDVARREAIEEAGLIVGR---TKPVLSY--L-AS-PGGTSERSSIMVGEVDATTASGIHGLAD 153 (202)
T ss_pred eEEE-ccceEcCCCCCHHHHHHHHHHHHhCceeeE---EEEEEEE--E-cC-CCcCceEEEEEEEEEcchhcccCCCCCC
Confidence 4676 569999999999999999999999998754 4444322 2 22 24556788888776421 1112345
Q ss_pred CCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcC
Q 016606 324 DGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHG 364 (386)
Q Consensus 324 dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG 364 (386)
++|..+..|+|++|+.+++.+| +++....++.+-|+..++
T Consensus 154 e~E~i~v~~~~~~e~~~~~~~G-~i~d~~ti~al~~~~~~~ 193 (202)
T PRK10729 154 ENEDIRVHVVSREQAYQWVEEG-KIDNAASVIALQWLQLHH 193 (202)
T ss_pred CCCceEEEEEcHHHHHHHHHcC-CCCcHHHHHHHHHHHHhh
Confidence 6788889999999999999987 577555555666665544
No 70
>PLN02709 nudix hydrolase
Probab=99.29 E-value=3.1e-11 Score=114.14 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=76.4
Q ss_pred CceEEEEEEeCCCCCCCCCccccccccCCCCCC-CHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEE
Q 016606 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (386)
Q Consensus 230 g~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGE-s~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~ 308 (386)
++.+|++.+|+.....+||.|. ++||++++|| ++.+||+||++||+||+.+. ...+|.+..... ..++ .++
T Consensus 49 ~~~~vLl~~Rs~~l~~h~Gqia-fPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~---v~vlg~L~~~~t-~sg~---~V~ 120 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPGEVA-LPGGKRDEEDKDDIATALREAREEIGLDPSL---VTIISVLEPFVN-KKGM---SVA 120 (222)
T ss_pred CceEEEEEEcCCCCCCCCCCcc-CCCcccCCCCCCHHHHHHHHHHHHHCCCchh---eEEeeecCCeEC-CCCC---EEE
Confidence 5678999999998878999996 5699999974 78999999999999998875 345565543322 2222 133
Q ss_pred EEEEEcC--CCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 309 CYDLKLP--EDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 309 vYdl~l~--~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.|...++ ..+.+.++++||+++.|+|++++.+.
T Consensus 121 P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 121 PVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 3333333 24555677899999999999998754
No 71
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=7.9e-11 Score=101.82 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=67.3
Q ss_pred EEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEee--CCC-
Q 016606 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDI--NGF- 300 (386)
Q Consensus 224 ~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~--~~~- 300 (386)
+.+.++ ++||+.+|.. .|.|+ +|||+++.||++.+||+||++||||+..... ...++.+...+. ...
T Consensus 5 ~ii~~~--~~vLLv~~~~-----~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~--~~~l~~~~~~~~~~~~~~ 74 (131)
T cd04686 5 AIILQG--DKILLLYTKR-----YGDYK-FPGGGVEKGEDHIEGLIRELQEETGATNIRV--IEKFGTYTERRPWRKPDA 74 (131)
T ss_pred EEEEEC--CEEEEEEEcC-----CCcEE-CccccCCCCCCHHHHHHHHHHHHHCCccccc--ceEEEEEEeeccccCCCC
Confidence 344444 3788877743 25786 5799999999999999999999999986321 234454432211 111
Q ss_pred eeeeEEEEEEEEEcCCCc-ccCCCCCce---eeEEEEcHHHHHHH
Q 016606 301 SYKRDVIFCYDLKLPEDF-VPMNQDGEV---ESFQLMPVAHVANV 341 (386)
Q Consensus 301 gi~~ev~~vYdl~l~~d~-~p~~~dgEV---~~f~wv~~dEv~~~ 341 (386)
.....+.++|.+.+.... .+...+.|. ..+.|+|++|+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 75 DIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 112234566777765432 233333343 35899999999874
No 72
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.26 E-value=7.4e-11 Score=108.74 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=72.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCc--cc-CC
Q 016606 246 YPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDF--VP-MN 322 (386)
Q Consensus 246 ~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~--~p-~~ 322 (386)
-|+.|+ +|||+++.||++++||+||++||||+.... +..++.+ . .. .+...+.+++|.+++..+. .+ ..
T Consensus 75 ~~~~le-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~---~~~~~~~--~-~~-~g~~~~~~~~f~a~~~~~~~~~~~~~ 146 (185)
T TIGR00052 75 EPWLLE-LSAGMVEKGESPEDVARREAIEEAGYQVKN---LRKLLSF--Y-SS-PGGVTELIHLFIAEVDDNQAAGIGGG 146 (185)
T ss_pred cceEEE-ECcEecCCCCCHHHHHHHHccccccceecc---eEEEEEE--E-cC-CCCCcEEEEEEEEEEchhhcCCCCCC
Confidence 367886 569999999999999999999999999864 4454433 1 12 2334577788888764321 11 12
Q ss_pred CCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHH
Q 016606 323 QDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDF 359 (386)
Q Consensus 323 ~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldf 359 (386)
.++|..+..|++++++.+++.+| +++....++.+.|
T Consensus 147 ~~~E~ie~~~~~~~e~~~~~~~G-~i~d~~t~~al~~ 182 (185)
T TIGR00052 147 ADEEEIEVLHLVFSQALQWIKEG-KIDNGKTVILLQW 182 (185)
T ss_pred CCccceEEEEeCHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 34556678999999999999997 5764444444444
No 73
>PRK08999 hypothetical protein; Provisional
Probab=99.24 E-value=6.8e-11 Score=116.22 Aligned_cols=133 Identities=18% Similarity=0.198 Sum_probs=86.9
Q ss_pred eeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC
Q 016606 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING 299 (386)
Q Consensus 220 VHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~ 299 (386)
+++.+.+..++++++|++||... ..++|+|++ +||+++.||++.+++.||+.||+|+..... ..++.+.+.+..
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~-PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~---~~l~~~~h~~~~- 78 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEG-KHQGGLWEF-PGGKVEPGETVEQALARELQEELGIEVTAA---RPLITVRHDYPD- 78 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCC-CCCCCeEEC-CccCCCCCCCHHHHHHHHHHHHhCCceecc---eeEEEEEEEcCC-
Confidence 45555555555568999999765 469999985 599999999999999999999999987642 334445444332
Q ss_pred CeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHH--HHcCCCCCCC
Q 016606 300 FSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFL--FRHGYIRPEY 370 (386)
Q Consensus 300 ~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl--~RhG~i~p~~ 370 (386)
.. ..+++|.+..... .++..|..+++|++++++.+. ...++... ++..+ -+--+|++++
T Consensus 79 ~~---~~i~~y~~~~~~~---~~~~~e~~~~~Wv~~~el~~~----~~~~~~~~--i~~~l~lp~ly~it~~~ 139 (312)
T PRK08999 79 KR---VRLDVRRVTAWQG---EPHGREGQPLAWVAPDELAVY----PFPPANQP--IVRALRLPDTYLITPEG 139 (312)
T ss_pred Ce---EEEEEEEEEEecC---cccCccCCccEEecHHHcccC----CCCcchHH--HHHHhcCCCEEEEECcc
Confidence 11 2345666554432 233457788999999998763 22333322 33333 3455666653
No 74
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.22 E-value=1.5e-10 Score=99.58 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYd 311 (386)
+++++.||... ..+|.|+. +||+++.||++++|++||++||+|+.+.. ...++.. .... . ....+.|.
T Consensus 24 ~~vLL~kr~~~--~~~g~w~l-PgG~ve~gE~~~~a~~REl~EEtGl~~~~---~~~~~~~--~~~~---~-~~~~~~f~ 91 (130)
T cd04511 24 GKVLLCRRAIE--PRHGFWTL-PAGFMENGETTEQGALRETWEEAGARVEI---DGLYAVY--SVPH---I-SQVYMFYR 91 (130)
T ss_pred CEEEEEEecCC--CCCCeEEC-CcccccCCCCHHHHHHHHHHHHhCCEEEe---eeEEEEE--ecCC---c-eEEEEEEE
Confidence 48999988753 36799975 59999999999999999999999998754 2233322 2211 1 24456677
Q ss_pred EEcCCCcccCCCCCceeeEEEEcHHHHH
Q 016606 312 LKLPEDFVPMNQDGEVESFQLMPVAHVA 339 (386)
Q Consensus 312 l~l~~d~~p~~~dgEV~~f~wv~~dEv~ 339 (386)
+..... .+. .+.|..+.+|++++++.
T Consensus 92 ~~~~~~-~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 92 ARLLDL-DFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEcCC-ccc-CCcchhceEEECHHHCC
Confidence 776543 122 23578899999999985
No 75
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.2e-10 Score=103.27 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=74.5
Q ss_pred eeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC
Q 016606 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING 299 (386)
Q Consensus 220 VHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~ 299 (386)
+-+.+.+..++ +|++-||.. ..+.|+|- ++||+++.|||+++||+||++|||||.+.. +..++.+.......
T Consensus 11 ~~v~~~i~~~~--~iLLvrR~~--~p~~g~Wa-lPGG~ve~GEt~eeaa~REl~EETgL~~~~---~~~~~v~~~~~rd~ 82 (145)
T COG1051 11 VAVGALIVRNG--RILLVRRAN--EPGAGYWA-LPGGFVEIGETLEEAARRELKEETGLRVRV---LELLAVFDDPGRDP 82 (145)
T ss_pred eeeeEEEEeCC--EEEEEEecC--CCCCCcEe-CCCccCCCCCCHHHHHHHHHHHHhCCcccc---eeEEEEecCCCCCC
Confidence 34455555444 888888875 34679995 679999999999999999999999999655 33444443333222
Q ss_pred CeeeeEEEEEEEEEcC-CCcccCCCC-CceeeEEEEcHHHHHHHHH
Q 016606 300 FSYKRDVIFCYDLKLP-EDFVPMNQD-GEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 300 ~gi~~ev~~vYdl~l~-~d~~p~~~d-gEV~~f~wv~~dEv~~~l~ 343 (386)
.+. .+.++|-...+ ++ +...+ ++..+..|++++++..+..
T Consensus 83 r~~--~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 83 RGH--HVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred cee--EEEEEEEEEecCCC--cccCChhhHhhcceecHhHcccccc
Confidence 322 33344434333 33 33333 3788899999999987543
No 76
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.18 E-value=2.1e-10 Score=99.80 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=67.0
Q ss_pred EEEECCceEEEEEEeCCC--CCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC---
Q 016606 225 YVEKDGQKFLWIGKRSQV--KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING--- 299 (386)
Q Consensus 225 yv~~dg~~~llIqrRS~~--K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~--- 299 (386)
|...++..+|++.+|... +...+|.|+. +||+++.||++.+||+||++||||+.... . +..++.+ ....+
T Consensus 8 ~~~~~~~~~vlL~~~~~~~~~~~~~~~W~l-PgG~ie~~E~~~~aA~REl~EEtGl~~~~-~-~~~l~~~--~~~~~~~v 82 (126)
T cd04662 8 YRFRDGRIEVLLVHPGGPFWANKDLGAWSI-PKGEYTEGEDPLLAAKREFSEETGFCVDG-P-FIDLGSL--KQSGGKVV 82 (126)
T ss_pred EEEcCCcEEEEEEEccCccccCCCCCEEEC-CcccCCCCcCHHHHHHHHHHHHhCCccee-e-EEeEEEE--ECCCCeEE
Confidence 433456678888887543 2345789976 59999999999999999999999998752 1 2222211 11111
Q ss_pred --------CeeeeEEEEEEEEEcCCCcccCCC-CCceeeEEEEcH
Q 016606 300 --------FSYKRDVIFCYDLKLPEDFVPMNQ-DGEVESFQLMPV 335 (386)
Q Consensus 300 --------~gi~~ev~~vYdl~l~~d~~p~~~-dgEV~~f~wv~~ 335 (386)
..+...+..+|.++.+.+ .++.. ++|+.+++|+|+
T Consensus 83 ~~fl~~~~~d~~~~~~~~f~~~~~~~-~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 83 HAWAVEADLDITDIKSNTFEMEWPKG-SGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EEEEEEecCChhHeEEEEEEEEccCC-CCccccCCccceeEeecC
Confidence 111223345566665531 24444 579999999983
No 77
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.14 E-value=8.3e-10 Score=110.70 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=67.0
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeE--EEEEEeeCCCeeeeEEEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG--AVSYTDINGFSYKRDVIFC 309 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg--~isy~~~~~~gi~~ev~~v 309 (386)
++||+.+|... .++|+|. ++||+++.|||+++||+||+.|||||.+.... +.... ...|.+.........+.++
T Consensus 214 g~VLLvrR~~~--p~~g~W~-lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~-l~~~~~~~~~f~~p~r~~~~~~i~~~ 289 (340)
T PRK05379 214 GHVLLVRRRAE--PGKGLWA-LPGGFLEQDETLLDACLRELREETGLKLPEPV-LRGSIRDQQVFDHPGRSLRGRTITHA 289 (340)
T ss_pred CEEEEEEecCC--CCCCeEE-CCcccCCCCCCHHHHHHHHHHHHHCCcccccc-cceeeeeeEEEcCCCCCCCCcEEEEE
Confidence 38999888753 3579997 56999999999999999999999999875432 11111 1122222110001133344
Q ss_pred EEEEcCCCcccC-CCCCceeeEEEEcHHHHHHH
Q 016606 310 YDLKLPEDFVPM-NQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 310 Ydl~l~~d~~p~-~~dgEV~~f~wv~~dEv~~~ 341 (386)
|.+.++.+-.+. ..++|+.++.|++++++.++
T Consensus 290 f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 290 FLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred EEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 545444321121 13468999999999999875
No 78
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.12 E-value=1.2e-09 Score=101.23 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=79.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCC--Cccc-CCCCC
Q 016606 249 MLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPE--DFVP-MNQDG 325 (386)
Q Consensus 249 ~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~--d~~p-~~~dg 325 (386)
.|+ +|||.++.| +|++||+||+.||||+.+.. +.+++.+ +.+ .|+..+..++|.++... ...+ ...++
T Consensus 80 ~lE-lPAG~vd~~-~p~~aA~REL~EETGy~a~~---~~~l~~~---~~s-pG~s~e~~~lf~a~~~~~~~~~~~~~de~ 150 (191)
T PRK15009 80 LIE-TCAGLLDND-EPEVCIRKEAIEETGYEVGE---VRKLFEL---YMS-PGGVTELIHFFIAEYSDSQRANAGGGVED 150 (191)
T ss_pred EEE-EeccccCCC-CHHHHHHHHHHHhhCCccce---EEEeeEE---EcC-CcccCcEEEEEEEEECchhcccCCCCCCC
Confidence 565 569999965 79999999999999998864 4555432 223 24556888888887531 1111 12467
Q ss_pred ceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcCCC
Q 016606 326 EVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYI 366 (386)
Q Consensus 326 EV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG~i 366 (386)
|..+..|+|++|+.+++.+| +++....++.+.|+..+|+.
T Consensus 151 E~iev~~~~~~e~~~~i~~G-~i~da~ti~al~~~~~~~~~ 190 (191)
T PRK15009 151 EDIEVLELPFSQALEMIKTG-EIRDGKTVLLLNYLQTSHLM 190 (191)
T ss_pred ceEEEEEEcHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccC
Confidence 88899999999999999997 68766777788888888875
No 79
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.11 E-value=4.9e-09 Score=94.43 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=92.2
Q ss_pred cCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHh
Q 016606 195 STFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274 (386)
Q Consensus 195 ~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~E 274 (386)
|.+|+++-...+...... ..-|+.+..+.++ ++++.++.. ..|+ +|||+++.||++++||+||++|
T Consensus 5 d~~~~~v~l~~~~~~~~~-----~~~~V~ii~~~~~--~~LL~~~~~------~~~e-lPgG~vE~gEt~~eaA~REl~E 70 (156)
T TIGR02705 5 DYYGNKVTLAFEKEPFSP-----NPNHVLVIPRYKD--QWLLTEHKR------RGLE-FPGGKVEPGETSKEAAIREVME 70 (156)
T ss_pred cCCCCEEEEEEeCCcccC-----CCCEEEEEEEECC--EEEEEEEcC------CcEE-CCceecCCCCCHHHHHHHHHHH
Confidence 555655555555543111 1235555554444 455555432 2375 5699999999999999999999
Q ss_pred hhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEE-EEcHHHHHHHHHcCCCC----C
Q 016606 275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQ-LMPVAHVANVIRRTEFF----K 349 (386)
Q Consensus 275 EaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~-wv~~dEv~~~l~~~~~f----k 349 (386)
|||+.+.. +.++|.+... .+ ....+.++|.+.... ..+ . +|..+.. +++++++.+++..+..| |
T Consensus 71 ETG~~~~~---~~~lg~~~~~--~~--~~~~~~~vf~A~~~~-~~~--~-~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~ 139 (156)
T TIGR02705 71 ETGAIVKE---LHYIGQYEVE--GE--STDFVKDVYFAEVSA-LES--K-DDYLETKGPVLLQEIPDIIKADPRFSFIMK 139 (156)
T ss_pred HhCcEeee---eEEEEEEEec--CC--CcEEEEEEEEEEEec-ccc--C-CCceeeEeEEEHHHHHHHHhcCCcccEEEc
Confidence 99998754 6677754332 11 234667778777653 222 2 4545555 79999999999987533 5
Q ss_pred CCcHHHHHHHHHHcCC
Q 016606 350 PNCSLAIIDFLFRHGY 365 (386)
Q Consensus 350 pn~alVlldfl~RhG~ 365 (386)
..+-.-+++.+.+.|+
T Consensus 140 d~~~~~~~~~~~~~~~ 155 (156)
T TIGR02705 140 DDVLLKCLERAKHIGF 155 (156)
T ss_pred hHHHHHHHHHHHHccC
Confidence 4554456666666665
No 80
>PLN03143 nudix hydrolase; Provisional
Probab=99.02 E-value=1.8e-08 Score=99.12 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=82.7
Q ss_pred CCceEEEEEEeCCCCCCCCCccccccccCCCC-CCCHHHHHHHHHHhhhCCCccccCCceeeEEEE------EEeeCCCe
Q 016606 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH-GIACGENIIKECEEEAGIPRSISNRARPVGAVS------YTDINGFS 301 (386)
Q Consensus 229 dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~a-GEs~~eAa~REl~EEaGL~~~~~~~l~~vg~is------y~~~~~~g 301 (386)
+++.++++.++.+... -.-.|++ +||+++. +|++.+||+||++||||+.+...+ +..++... ..+..+ |
T Consensus 140 ~ge~~VlLVrQ~R~pv-g~~~lE~-PAG~lD~~~edp~~aA~REL~EETG~~~~a~~-lv~L~~~~~~~~g~~v~psp-G 215 (291)
T PLN03143 140 EGETYAVLTEQVRVPV-GKFVLEL-PAGMLDDDKGDFVGTAVREVEEETGIKLKLED-MVDLTAFLDPSTGCRMFPSP-G 215 (291)
T ss_pred CCCEEEEEEEeEecCC-CcEEEEe-cccccCCCCCCHHHHHHHHHHHHHCCccccce-EEEeeeccccCcCceEEecC-C
Confidence 3444566655544211 1126764 6999997 489999999999999999864322 33332110 112222 3
Q ss_pred eeeEEEEEEEEEc--CCC--------cccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcCCCC
Q 016606 302 YKRDVIFCYDLKL--PED--------FVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIR 367 (386)
Q Consensus 302 i~~ev~~vYdl~l--~~d--------~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG~i~ 367 (386)
+..+.+++|.... +.. .....+++|..+..|++++|+.+++.++ |.-.++.+++.+.+.|++-
T Consensus 216 ~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~---ktl~al~l~~~~k~~g~~~ 288 (291)
T PLN03143 216 GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA---KVLMAIALYEMAKREGLLP 288 (291)
T ss_pred ccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH---HHHHHHHHHHHHHhcCCCC
Confidence 3446666664332 210 0112356888999999999999998754 4456677889999999884
No 81
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.97 E-value=6.8e-10 Score=107.70 Aligned_cols=97 Identities=15% Similarity=0.322 Sum_probs=67.9
Q ss_pred EEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEE
Q 016606 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDL 312 (386)
Q Consensus 233 ~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl 312 (386)
++++.+|.+. +||++-. .||-|++|||.++|++||++||+||.+.. + .|....+..+..-.+.-|..
T Consensus 156 ~ilLa~~~~h---~~g~yS~-LAGFVE~GETlE~AV~REv~EE~Gi~V~~---v------rY~~SQPWPfP~SLMigf~a 222 (279)
T COG2816 156 EILLARHPRH---FPGMYSL-LAGFVEPGETLEQAVAREVFEEVGIKVKN---V------RYVGSQPWPFPHSLMLGFMA 222 (279)
T ss_pred ceeecCCCCC---CCcceee-eeecccCCccHHHHHHHHHHHhhCeEEee---e------eEEeccCCCCchhhhhhhee
Confidence 4888888765 4899965 59999999999999999999999998764 3 33322221111111222223
Q ss_pred Ec-CCCcccCCCCCceeeEEEEcHHHHHHHHHc
Q 016606 313 KL-PEDFVPMNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 313 ~l-~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
+. .++ ++++.+|+++.+|++.+|++.++..
T Consensus 223 ey~sge--I~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 223 EYDSGE--ITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred eecccc--ccCCcchhhhccccCHhHHhhhcCC
Confidence 32 334 4566789999999999998888764
No 82
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.93 E-value=4.2e-09 Score=99.38 Aligned_cols=116 Identities=23% Similarity=0.198 Sum_probs=82.2
Q ss_pred eeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCC-CHHHHHHHHHHhhhCCCccccCCceeeEEEEEEe-e
Q 016606 220 VPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYTD-I 297 (386)
Q Consensus 220 VHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGE-s~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~-~ 297 (386)
|-+..+...+++.+++++|||.+-+.++|..- .+||..+..+ +-..+|.||+.||.|++.+... .+|...-.. .
T Consensus 46 VlI~L~~~~~~~l~vLltkRSr~LrshsGev~-fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~---~~g~l~~~~~r 121 (246)
T KOG3069|consen 46 VLIPLVQVGSGELSVLLTKRSRTLRSHSGEVC-FPGGRRDPHDKSDIQTALRETEEEIGLDPELVD---VLGALPPFVLR 121 (246)
T ss_pred EEEEEEEcCCCceEEEEEeccccccccCCcee-CCCCcCCccccchHHHHHHHHHHHhCCCHHHhh---hhhhccceeec
Confidence 43433433356689999999999999999995 5699998764 5667999999999999997643 334332221 2
Q ss_pred CCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHH
Q 016606 298 NGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANV 341 (386)
Q Consensus 298 ~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~ 341 (386)
.+..+.+-+.++++-.+- ..+.++.+||++..|+|++++..-
T Consensus 122 ~~~~v~p~v~~l~~~~~l--~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 122 SGWSVFPVVGFLSDKKIL--PSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred cCcccceeEEEEeccccc--ccccCCchheeeeeeeeHHHHhhh
Confidence 333455566666654431 236778999999999999998654
No 83
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.91 E-value=1.5e-08 Score=87.01 Aligned_cols=91 Identities=15% Similarity=0.033 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEE
Q 016606 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDL 312 (386)
Q Consensus 233 ~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl 312 (386)
++++.+|.. +.|+. +||+++.||++++||+||+.||+|+.... +.++|.+.+.... .....++|.+
T Consensus 12 ~vLl~~~~~------~~w~l-PgG~ve~gE~~~~aa~REl~EE~G~~~~~---~~~l~~~~~~~~~----~~~~~~~y~a 77 (118)
T cd04665 12 GLLLVRHKD------RGWEF-PGGHVEPGETIEEAARREVWEETGAELGS---LTLVGYYQVDLFE----SGFETLVYPA 77 (118)
T ss_pred EEEEEEeCC------CEEEC-CccccCCCCCHHHHHHHHHHHHHCCccCc---eEEEEEEEecCCC----CcEEEEEEEE
Confidence 677666641 46874 69999999999999999999999999854 5666665443321 1133455655
Q ss_pred EcCCCcccCCCCCceeeEEEEcHHHH
Q 016606 313 KLPEDFVPMNQDGEVESFQLMPVAHV 338 (386)
Q Consensus 313 ~l~~d~~p~~~dgEV~~f~wv~~dEv 338 (386)
......... ...|+....|++.+-.
T Consensus 78 ~~~~~~~~~-~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 78 VSAQLEEKA-SYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEeccccc-ccccccCcEEeccCCc
Confidence 553322222 2468999999986543
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=84.86 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=66.4
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHH-HHHHHHHhhhCCCccccCCceeeEEEEEEeeCCC---eeeeEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE-NIIKECEEEAGIPRSISNRARPVGAVSYTDINGF---SYKRDVI 307 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~e-Aa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~---gi~~ev~ 307 (386)
.++++.+|...+ |.|+. +||+++.||++.+ ||+||++|||||..... ....++.+........ .......
T Consensus 24 ~~vl~~~~~~~~----~~~~~-PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (161)
T COG0494 24 GEVLLAQRRDDG----GLWEL-PGGKVEPGEELPEEAAARELEEETGLRVKDE-RLELLGEFPPSPGDGSSVGGREHRVF 97 (161)
T ss_pred CEEeEEEccccC----Cceec-CCcccCCCCchHHHHHHHHHHHHhCCeeeee-cceeeeeccCcccCcccccceEEEEE
Confidence 689999987765 68865 6999999999988 99999999999988741 1334443332222111 1111222
Q ss_pred EEEEEEcCCCcccCCC---CCceeeEEEEcHHHHHHHHH
Q 016606 308 FCYDLKLPEDFVPMNQ---DGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~---dgEV~~f~wv~~dEv~~~l~ 343 (386)
+.+.........+... ..|...+.|++++++.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 136 (161)
T COG0494 98 FVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL 136 (161)
T ss_pred EeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence 2222222222222222 25889999999999887654
No 85
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.88 E-value=2.7e-08 Score=86.65 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=38.1
Q ss_pred EEEEEECC-ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCc
Q 016606 223 NGYVEKDG-QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (386)
Q Consensus 223 ~~yv~~dg-~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~ 280 (386)
.+|+..++ +.+|++.|.. . +.|. ++||+++.||++.+||+||+.||||+..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~-~-----~~~~-lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHP-L-----AGFQ-IVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEeCCceEEEEEEEcC-C-----CcEE-CCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 44554433 3466666543 2 3475 5799999999999999999999999987
No 86
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.69 E-value=2.4e-07 Score=79.68 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccc
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~ 282 (386)
+.+++ +|+.. .++|+|. ++||.++.||++.+||+||+.||+|+....
T Consensus 16 ~~lL~-~r~~~--~~~~~w~-lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 16 GLLVI-RRGIE--PGRGKLA-LPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CEEEE-EeecC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 34555 55432 3689996 569999999999999999999999998764
No 87
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.69 E-value=7.3e-09 Score=101.39 Aligned_cols=97 Identities=27% Similarity=0.336 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEE--EEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDV--IFC 309 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev--~~v 309 (386)
.+.++.| .|+.-||+|- .+||-+++|||.+||++||.+||+|++++. |.|....+....+.- +.+
T Consensus 200 ~~~LL~R---~~r~~~gl~t-~lAGFlEpGES~eeav~REtwEEtGi~V~~---------I~~~asQPWP~~p~SLMIgc 266 (345)
T KOG3084|consen 200 KHALLGR---QKRYPPGLWT-CLAGFLEPGESIEEAVRRETWEETGIEVEV---------ISYVASQPWPLMPQSLMIGC 266 (345)
T ss_pred CEeeeec---ccCCCCchhh-hhhccCCccccHHHHHHHHHHHHhCceeee---------EeeeecCCCCCCchHHHHHH
Confidence 3555554 3555678996 569999999999999999999999999865 334332222110110 111
Q ss_pred EEE-EcCCCcccCCC-CCceeeEEEEcHHHHHHHHH
Q 016606 310 YDL-KLPEDFVPMNQ-DGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 310 Ydl-~l~~d~~p~~~-dgEV~~f~wv~~dEv~~~l~ 343 (386)
+-+ ..... .+.+ |.|.++.+|++-+|+.+.+.
T Consensus 267 ~ala~~~~~--I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 267 LALAKLNGK--ISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred HHHHhhCCc--cccCcchhhhhcccccHHHHHHHHH
Confidence 111 11122 2233 44999999999999999987
No 88
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.57 E-value=4.3e-07 Score=84.10 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=62.3
Q ss_pred CceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccC-----------Cc--eeeEEEEEEe
Q 016606 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN-----------RA--RPVGAVSYTD 296 (386)
Q Consensus 230 g~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~-----------~l--~~vg~isy~~ 296 (386)
+..++++.+|.. +|.|. ++||.++.||++.+||+||+.||+|+..+... .+ ..++.+....
T Consensus 47 ~~l~vLl~~r~~-----~g~wa-lPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~ 120 (186)
T cd03670 47 PILQFVAIKRPD-----SGEWA-IPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYV 120 (186)
T ss_pred CeeEEEEEEeCC-----CCcCc-CCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccc
Confidence 346788888843 48996 56999999999999999999999977542221 00 0122211111
Q ss_pred eC----CCeeeeEEEEEEEEEcCC---CcccCCCCCceeeEEEEcHHHHHH
Q 016606 297 IN----GFSYKRDVIFCYDLKLPE---DFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 297 ~~----~~gi~~ev~~vYdl~l~~---d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
.. +.++..-+.|.|.++... ...++. .+|..+.+|++++++..
T Consensus 121 ~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a-~dda~~a~W~~v~~l~~ 170 (186)
T cd03670 121 DDPRNTDNAWMETVAVNFHDEDGNDVENLPLEA-GDDAGSVRWQDIDSKLP 170 (186)
T ss_pred cCCCCCCcceEEEEEEEEEecCcccccccccCC-CCchheeEEEEcccccc
Confidence 11 122332344555543111 112222 34799999999999763
No 89
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.54 E-value=1.3e-06 Score=80.70 Aligned_cols=118 Identities=23% Similarity=0.344 Sum_probs=78.0
Q ss_pred eeeEEEEEEECCceEEEEEEeCCCCCCCCC-ccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEee
Q 016606 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPG-MLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDI 297 (386)
Q Consensus 219 gVHl~~yv~~dg~~~llIqrRS~~K~t~PG-~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~ 297 (386)
||-+-+.+..||...+++++.-+. ++ -+ ..+ ++||.|++||+++.||+||++||+|+..... .....-|.++
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRp-P~-Gk~ciE-lPAGLiD~ge~~~~aAiREl~EEtGy~gkv~----~~s~~~f~DP 147 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRP-PT-GKICIE-LPAGLIDDGEDFEGAAIRELEEETGYKGKVD----MVSPTVFLDP 147 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecC-CC-CcEEEE-cccccccCCCchHHHHHHHHHHHhCccceee----eccccEEcCC
Confidence 456666676788888888664321 11 12 344 5699999999999999999999999985432 1222334443
Q ss_pred CCCeeeeEE--EEEEEEEcCCCccc--CCCCCceeeEEEEcHHHHHHHHHc
Q 016606 298 NGFSYKRDV--IFCYDLKLPEDFVP--MNQDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 298 ~~~gi~~ev--~~vYdl~l~~d~~p--~~~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
|.+-.... .+.|+..+|+...| .+.|+|..+...++..++.+.+.+
T Consensus 148 -Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~ 197 (225)
T KOG3041|consen 148 -GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELAD 197 (225)
T ss_pred -CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHh
Confidence 11111123 34555666665444 456899999999999999887754
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.35 E-value=8.9e-06 Score=67.37 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=63.8
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vY 310 (386)
++++||+||.. +..|+|+|+++ +|.++.+++.+++..||+.||.++. ....+.+.+.+.. .. -.+.+|
T Consensus 13 ~~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~H~fth-~~---~~~~~~ 80 (118)
T cd03431 13 DGRVLLEKRPE-KGLLAGLWEFP-SVEWEEEADGEEALLSALKKALRLS------LEPLGTVKHTFTH-FR---LTLHVY 80 (118)
T ss_pred CCeEEEEECCC-CCCCCcceeCC-CccccCCcCHHHHHHHHHHHHhCcc------cccceeEEEecCC-eE---EEEEEE
Confidence 35899999965 57899999865 8999999999999999999998751 1223445554432 11 234566
Q ss_pred EEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 311 DLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 311 dl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
.+.+.... .+..++.|++++++.+
T Consensus 81 ~~~~~~~~------~~~~~~~W~~~eel~~ 104 (118)
T cd03431 81 LARLEGDL------LAPDEGRWVPLEELDE 104 (118)
T ss_pred EEEEeCCC------cCccccEEccHHHHhh
Confidence 66554321 2456789999998876
No 91
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.32 E-value=2.3e-06 Score=75.64 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=63.8
Q ss_pred ceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEE-EEeeCCCeeeeEEEEE
Q 016606 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS-YTDINGFSYKRDVIFC 309 (386)
Q Consensus 231 ~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~is-y~~~~~~gi~~ev~~v 309 (386)
..++|+-.=|+.. -.| ++|+||++++|++.+||+||+.||||+...+.+ ..|.+. +.......... -+.
T Consensus 23 ~ieVLlvsSs~~~----~~w-i~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~---~~~g~~~~~~~~~~~~~k--~~~ 92 (145)
T KOG2839|consen 23 KIEVLLVSSSKKP----HRW-IVPKGGWEPDESVEEAALRETWEEAGVKGKLGR---LLGGFEDFLSKKHRTKPK--GVM 92 (145)
T ss_pred ceEEEEEecCCCC----CCc-cCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec---cccchhhccChhhccccc--cee
Confidence 3566666544422 245 577999999999999999999999999887643 122221 11111111101 134
Q ss_pred EEEEcCCCcccCC-CCCceeeEEEEcHHHHHHHHHc
Q 016606 310 YDLKLPEDFVPMN-QDGEVESFQLMPVAHVANVIRR 344 (386)
Q Consensus 310 Ydl~l~~d~~p~~-~dgEV~~f~wv~~dEv~~~l~~ 344 (386)
|-+.+.+....-+ ...|....+|+.++|..+.++.
T Consensus 93 ~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~ 128 (145)
T KOG2839|consen 93 YVLAVTEELEDWPESEHEFREREWLKLEDAIELCQH 128 (145)
T ss_pred ehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhh
Confidence 5444433322111 2345888999999999998873
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=1.9e-05 Score=77.46 Aligned_cols=131 Identities=17% Similarity=0.266 Sum_probs=81.0
Q ss_pred EEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCC--C
Q 016606 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING--F 300 (386)
Q Consensus 223 ~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~--~ 300 (386)
.++|+ |...+|+|-+=-..-..++|.|-. ++|.|..||++.++++||++||+|++.+..+-+ .+..... .
T Consensus 119 g~~V~-n~~~eVlVv~e~d~~~~~~~~wK~-ptG~v~~~e~i~~gavrEvkeetgid~ef~eVl------a~r~~H~~~~ 190 (295)
T KOG0648|consen 119 GAFVL-NKKKEVLVVQEKDGAVKIRGGWKL-PTGRVEEGEDIWHGAVREVKEETGIDTEFVEVL------AFRRAHNATF 190 (295)
T ss_pred eeeEe-cCCceeEEEEecccceeecccccc-cceEecccccchhhhhhhhHHHhCcchhhhhHH------HHHhhhcchh
Confidence 34454 444577775432334557899975 588999999999999999999999977654311 1111111 1
Q ss_pred e-eeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcC--CCCCCCcHHHHHHHHHHc
Q 016606 301 S-YKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRT--EFFKPNCSLAIIDFLFRH 363 (386)
Q Consensus 301 g-i~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~--~~fkpn~alVlldfl~Rh 363 (386)
+ ...+..++..++ |-.+....++.|++.++||++++........ +.|+ +...|.+..+..+
T Consensus 191 ~~~ksd~f~~c~L~-p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~-~~~~Ic~~~~~~~ 254 (295)
T KOG0648|consen 191 GLIKSDMFFTCELR-PRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFR-LAAGICLNRLEEF 254 (295)
T ss_pred hcccccceeEEEee-ccccccchhHHHHHHHhcccHHHhhcccccccchhhH-HHhhhhHHHHhhh
Confidence 1 122334444443 3456667788999999999999887765432 1222 2344555555554
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.11 E-value=0.0029 Score=57.30 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=75.9
Q ss_pred EEEEEEeCCCC--CCCCCccccccccCCCCCCCH--H-----HHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeee
Q 016606 233 FLWIGKRSQVK--STYPGMLDILAGGGLPHGIAC--G-----ENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYK 303 (386)
Q Consensus 233 ~llIqrRS~~K--~t~PG~wD~~vaGgV~aGEs~--~-----eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~ 303 (386)
+++|-.|-... .-.-|++..-+|||+..|+.. . -.+.||+.||.++.....+.+.++|-|.-....-..++
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 88888886522 224478888899999877542 2 24789999999999877666778876643322212233
Q ss_pred eEEEEEEEEEcC-CCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHH
Q 016606 304 RDVIFCYDLKLP-EDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIID 358 (386)
Q Consensus 304 ~ev~~vYdl~l~-~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlld 358 (386)
-.+ +|.+.+. .++..+ +.+.-+++|+.+.++..... .+..++.+++-+
T Consensus 153 iG~--lf~~~~k~ndvevK--Ekd~~~~kwik~~ele~~y~---~~EtWS~~~~~~ 201 (203)
T COG4112 153 IGA--LFLGRGKFNDVEVK--EKDLFEWKWIKLEELEKFYG---VMETWSKISAAV 201 (203)
T ss_pred EEE--EEEeeccccceeee--ecceeeeeeeeHHHHHHHhh---hhHHHHHHHHHH
Confidence 233 3444432 344333 44677899999999988432 355666665543
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.05 E-value=0.0014 Score=54.95 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=55.1
Q ss_pred ECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEE
Q 016606 228 KDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVI 307 (386)
Q Consensus 228 ~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~ 307 (386)
.+.++++|++||.. |..|-|+|+++ .--.+ +++..+.+.+.+.+..|+..... ..++.+.+.... . .-.+
T Consensus 5 ~~~~~~~Ll~kRp~-~gll~GLwefP-~~e~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~~v~H~fSH-~---~~~~ 74 (114)
T PF14815_consen 5 IRSQGRVLLEKRPE-KGLLAGLWEFP-LIESD-EEDDEEELEEWLEEQLGLSIRSV---EPLGTVKHVFSH-R---RWTI 74 (114)
T ss_dssp EETTSEEEEEE--S-SSTTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE----S-SEEEEEE-SS-E---EEEE
T ss_pred EEeCCEEEEEECCC-CChhhcCcccC-EeCcc-CCCCHHHHHHHHHHHcCCChhhh---eecCcEEEEccc-e---EEEE
Confidence 34556899999964 67899999976 43344 44445666667777888876543 255666666533 2 2335
Q ss_pred EEEEEEcCCCcccCCCCCceeeEEEEcHHHHHH
Q 016606 308 FCYDLKLPEDFVPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 308 ~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
.+|.+.+...... +-.+..|++.+++.+
T Consensus 75 ~~~~~~~~~~~~~-----~~~~~~W~~~~~l~~ 102 (114)
T PF14815_consen 75 HVYEVEVSADPPA-----EPEEGQWVSLEELDQ 102 (114)
T ss_dssp EEEEEEEE-SS---------TTEEEEEGGGGGG
T ss_pred EEEEEEecCCCCC-----CCCCcEEEEHHHHhh
Confidence 6777777653211 456789999999865
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.68 E-value=0.013 Score=51.28 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeE-------EE--EEEeeCCCeeeeEEEEEEEEEcCCC
Q 016606 247 PGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG-------AV--SYTDINGFSYKRDVIFCYDLKLPED 317 (386)
Q Consensus 247 PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg-------~i--sy~~~~~~gi~~ev~~vYdl~l~~d 317 (386)
-|-|.+ +-|-...||.++.||+||..||+||.++-- ...+| .+ .|..+....+..-..-.|.++-|+.
T Consensus 35 ~GAWSI-PKGey~~gEdp~~AArREf~EE~Gi~vdGP--~~~lG~~kQ~GGKvVta~~veae~Dva~~rSntFe~eWPpr 111 (161)
T COG4119 35 DGAWSI-PKGEYTGGEDPWLAARREFSEEIGICVDGP--RIDLGSLKQSGGKVVTAFGVEAELDVADARSNTFELEWPPR 111 (161)
T ss_pred CCcccc-cccccCCCcCHHHHHHHHhhhhhceeecCc--hhhhhhhccCCCcEEEEEeeeeeeehhhhhcceeeeecCCC
Confidence 378865 599999999999999999999999988531 11111 11 1111110000000013455555532
Q ss_pred c-ccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcCCC
Q 016606 318 F-VPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYI 366 (386)
Q Consensus 318 ~-~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG~i 366 (386)
- .-+ .=.||+..-|++++|....+..+. .| +||-|..|-.+
T Consensus 112 SG~M~-~FPEVDRagWF~l~eAr~Kil~gQ--Rp-----fldrL~a~~~a 153 (161)
T COG4119 112 SGKMR-KFPEVDRAGWFPLAEARTKILKGQ--RP-----FLDRLMAHAVA 153 (161)
T ss_pred CCccc-cCcccccccceecHHHHhHHhhcc--ch-----HHHHHHHHhcc
Confidence 1 011 124899999999999998887652 22 57777666433
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.087 Score=50.12 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=32.4
Q ss_pred EEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhC
Q 016606 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAG 277 (386)
Q Consensus 233 ~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaG 277 (386)
+++.-||+.. |.|- ++||.+++||-+-.+++||..||+=
T Consensus 140 e~vavkr~d~-----~~WA-iPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWA-IPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-----Cccc-CCCCcCCchhhhhHHHHHHHHHHHH
Confidence 5666677665 5675 5699999999999999999999984
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=85.10 E-value=3.6 Score=41.05 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=61.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEe---eCCCeeeeEEEEEEEEEcCCC--ccc---CCCC
Q 016606 253 LAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTD---INGFSYKRDVIFCYDLKLPED--FVP---MNQD 324 (386)
Q Consensus 253 ~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~---~~~~gi~~ev~~vYdl~l~~d--~~p---~~~d 324 (386)
+++|-|+..-+-.+-+.||..||.|.+..... ++.+ ..|.. .++. +..+| -+++.+. -.| ...+
T Consensus 288 Lcag~Vd~p~s~~e~a~~e~veecGYdlp~~~-~k~v--a~y~sGVG~SG~---~QTmf--y~eVTdA~rsgpGgg~~ee 359 (405)
T KOG4432|consen 288 LCAGRVDDPFSDPEKAARESVEECGYDLPEDS-FKLV--AKYISGVGQSGD---TQTMF--YVEVTDARRSGPGGGEKEE 359 (405)
T ss_pred eecccCCCCcccHHHHHHHHHHHhCCCCCHHH-Hhhh--heeecccCCcCC---eeEEE--EEEeehhhccCCCCCcccc
Confidence 57899998899999999999999999875432 3322 12221 1221 12333 3443211 001 1235
Q ss_pred CceeeEEEEcHHHHHHHHHcCCCCCCC-cHHHHHHHHHH
Q 016606 325 GEVESFQLMPVAHVANVIRRTEFFKPN-CSLAIIDFLFR 362 (386)
Q Consensus 325 gEV~~f~wv~~dEv~~~l~~~~~fkpn-~alVlldfl~R 362 (386)
+|..+..-++++++..+.+++. +.|. ..+.-+-|++.
T Consensus 360 ~E~IEvv~lsle~a~~~~~q~~-I~~~lt~~~gi~wfl~ 397 (405)
T KOG4432|consen 360 DEDIEVVRLSLEDAPSLYRQHN-IGPPLTTYYGIGWFLD 397 (405)
T ss_pred cceeeEEEechhhhhHHHhccC-CCCCcceeeeHHHHHh
Confidence 6888889999999999999864 4333 44444555543
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=83.17 E-value=3.8 Score=40.90 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=62.9
Q ss_pred cccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCC---cee
Q 016606 252 ILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDG---EVE 328 (386)
Q Consensus 252 ~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dg---EV~ 328 (386)
.++||-|+...++.|-|..|+.||.|..++... ++.+ ++|....+ -.--.+++|-+++.+.....-..| |+.
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~-l~hv--~~~~~g~~--~s~sa~~l~y~ei~es~kis~gggv~~~~~ 156 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDD-LIHV--ITFVVGAH--QSGSAQHLYYAEIDESMKISEGGGVITKVY 156 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhH-ceEE--EEEEeccc--cCccchheeeeecchhhccccCCceeeEEE
Confidence 467999999999999999999999999988754 5543 44442211 111234566677765433332222 333
Q ss_pred eEEEEcHHHHHHHHHcCCCCC-CCcHHHHHHHHHH
Q 016606 329 SFQLMPVAHVANVIRRTEFFK-PNCSLAIIDFLFR 362 (386)
Q Consensus 329 ~f~wv~~dEv~~~l~~~~~fk-pn~alVlldfl~R 362 (386)
-..=|+.++...++..+.+.| |.+.|..+.|+.+
T Consensus 157 ~~~~~a~e~ar~~i~t~a~~~g~p~~l~~~~~me~ 191 (405)
T KOG4432|consen 157 YPVNVAREIARPAIGTHAEVKGPPGVLFAFQWMEL 191 (405)
T ss_pred EeehhhHHHHHHhhccCccccCCCeeeeHHHHHHH
Confidence 344456677777776543332 2233444555544
No 99
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=63.70 E-value=8 Score=45.41 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=47.3
Q ss_pred eeeEEEEEEECCceEEEEEEeCCCCCCCCCcc---ccccccCCCCCCC-----HHHHHHHHHHhhhCCCccc
Q 016606 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGML---DILAGGGLPHGIA-----CGENIIKECEEEAGIPRSI 282 (386)
Q Consensus 219 gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~w---D~~vaGgV~aGEs-----~~eAa~REl~EEaGL~~~~ 282 (386)
.---|||++.+|---+++||++.-++.|.-.+ .|+ -|.-+.|-| ..+.++||+.+|+||.++.
T Consensus 225 DeagnGY~Rseg~~avllqrk~~ArRvYAtilnartNT-DGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 225 DEAGNGYCRSEGVVAVLLQRKSLARRVYATILNARTNT-DGFKEQGVTFPSGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred hccCCceeecCceEEEEEehhHHHHHHHHHhhccccCC-CchhhcCccCCCcHHHHHHHHHHHHhcCCCccc
Confidence 34568898877777899999998887776433 122 466666654 5788999999999999875
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=63.61 E-value=1.2e+02 Score=28.46 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=52.5
Q ss_pred EEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCccccCCce---eeEEEEE-------
Q 016606 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRAR---PVGAVSY------- 294 (386)
Q Consensus 225 yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~---~vg~isy------- 294 (386)
.|...+-.+||+-|...+ .+ -++||.+..||+..+++.|.+.|-+|.......... .+|....
T Consensus 51 lvh~h~~PHvLLLq~~~~------~f-kLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~ 123 (188)
T PF13869_consen 51 LVHEHGHPHVLLLQIGNT------FF-KLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFM 123 (188)
T ss_dssp EEEETTEEEEEEEEETTT------EE-E-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--
T ss_pred EEecCCCcEEEEEeccCc------cc-cCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCC
Confidence 333344456777665443 23 357999999999999999999999998754322221 2232211
Q ss_pred -EeeCCC-eeeeEEEEEEEEEcCCCc---ccCCCCCceeeEEEEcHHHHHH
Q 016606 295 -TDINGF-SYKRDVIFCYDLKLPEDF---VPMNQDGEVESFQLMPVAHVAN 340 (386)
Q Consensus 295 -~~~~~~-gi~~ev~~vYdl~l~~d~---~p~~~dgEV~~f~wv~~dEv~~ 340 (386)
.|.... .--.|+..+|.+.+|+.. +|++ ....-+|+=|+.+
T Consensus 124 YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn-----~kL~AvPLFeLyd 169 (188)
T PF13869_consen 124 YPYLPPHITKPKECIKLYLVQLPEKCLFAVPKN-----MKLVAVPLFELYD 169 (188)
T ss_dssp BSS--TT-SS-SEEEEEEEEE--SSEEEEEETT-----SEEEEEEHHHHTT
T ss_pred CCCCCcccCChhheeEEEEEecCCCceEecCCC-----CeEEeecHhhhhc
Confidence 110000 012378888999998752 3332 2345566666654
No 101
>PRK10880 adenine DNA glycosylase; Provisional
Probab=63.44 E-value=59 Score=33.27 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=26.8
Q ss_pred eEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHhhhCCCc
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~EEaGL~~ 280 (386)
++++++||.. +..|.|+|+++ . ++ + .+ ..+|..|+.|+..
T Consensus 242 ~~~~l~~r~~-~gl~~gl~~fP-~--~~---~-~~-~~~~~~~~~~~~~ 281 (350)
T PRK10880 242 DEVWLEQRPP-SGLWGGLFCFP-Q--FA---D-EE-ELRQWLAQRGIAA 281 (350)
T ss_pred CEEEEEECCc-cChhhccccCC-C--Cc---c-hh-hHHHHHHhcCCch
Confidence 4899999965 46799999876 3 22 1 12 2456668888753
No 102
>PF14443 DBC1: DBC1
Probab=62.27 E-value=42 Score=29.48 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCCCCCCCcccccc-ccCCCC-CCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCC--eeeeEEE
Q 016606 232 KFLWIGKRSQVKSTYPGMLDILA-GGGLPH-GIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF--SYKRDVI 307 (386)
Q Consensus 232 ~~llIqrRS~~K~t~PG~wD~~v-aGgV~a-GEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~--gi~~ev~ 307 (386)
.++++.+|.+.--.-.|-|+-.- ||.... ..+...+|+|=++|=+||+.....+-...-.+.|...... .-..|+.
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~Eiv 87 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIV 87 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEE
Confidence 47888887663333467887653 334443 3467899999999999999876544323335666653321 1234665
Q ss_pred EEE
Q 016606 308 FCY 310 (386)
Q Consensus 308 ~vY 310 (386)
.+|
T Consensus 88 VlF 90 (126)
T PF14443_consen 88 VLF 90 (126)
T ss_pred EEE
Confidence 555
No 103
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=50.59 E-value=74 Score=31.21 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=58.4
Q ss_pred CceEEEEEEeCCCCCCCCCccccccccCC-CCCCCHHHHHHHHHHhhhCCCcccc-CCceeeEEEEEEeeCCCee----e
Q 016606 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGL-PHGIACGENIIKECEEEAGIPRSIS-NRARPVGAVSYTDINGFSY----K 303 (386)
Q Consensus 230 g~~~llIqrRS~~K~t~PG~wD~~vaGgV-~aGEs~~eAa~REl~EEaGL~~~~~-~~l~~vg~isy~~~~~~gi----~ 303 (386)
....|+|+ |.-.+. +.| ..+-+-. +.|++...+|.|++.+=.|=..... ..-.|+|...+.++..... .
T Consensus 138 r~LyLLV~-~k~g~~---s~w-~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~ 212 (263)
T KOG4548|consen 138 RKLYLLVK-RKFGKS---SVW-IFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVS 212 (263)
T ss_pred ceEEEEEe-eccCcc---cee-eCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccccccc
Confidence 33345555 544443 245 3456666 8899999999999998887544321 1123555433333221110 1
Q ss_pred eEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHH
Q 016606 304 RDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIR 343 (386)
Q Consensus 304 ~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~ 343 (386)
.-+.+.+-.-++.++ +++ +-.++|.|++-+|+.+.+.
T Consensus 213 sk~ff~k~~lv~~~~-~kn--~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 213 SKVFFFKASLVANSN-QKN--QNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred ceeEEeeeeeccccc-hhc--ccccceEEechHHHhhhcc
Confidence 123333333333332 333 3467799999999987553
No 104
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=36.98 E-value=28 Score=24.60 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=12.2
Q ss_pred ccCCCCCCCHHHHHHHHHHhhh
Q 016606 255 GGGLPHGIACGENIIKECEEEA 276 (386)
Q Consensus 255 aGgV~aGEs~~eAa~REl~EEa 276 (386)
||-..+|--|..++.||+-||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 7777788899999999999997
No 105
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=26.19 E-value=54 Score=26.07 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=24.3
Q ss_pred EEEcHHHHHHHHHcCCCCCCCcHHHHHHHHHHcCCCC
Q 016606 331 QLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIR 367 (386)
Q Consensus 331 ~wv~~dEv~~~l~~~~~fkpn~alVlldfl~RhG~i~ 367 (386)
.+++.+++.+++. + .-.+...-+.+||.++|+|+
T Consensus 52 ~~lt~~~~~~~i~-~--~d~~~~~ri~~FL~~~G~IN 85 (86)
T PF04433_consen 52 KYLTKTDARKLIK-G--IDVNKIRRIYDFLERWGLIN 85 (86)
T ss_dssp S---HHHHHHHTT-S--SSHHHHHHHHHHHHHTTSSS
T ss_pred CcccHHHHHHHcc-c--cCHHHHHHHHHHHHHcCccC
Confidence 4578899988886 2 22566778899999999995
No 106
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=25.85 E-value=40 Score=18.20 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=9.8
Q ss_pred ceeeEeecCCCC
Q 016606 9 TQTIRLSFPPLH 20 (386)
Q Consensus 9 ~~~~~~~~~~~~ 20 (386)
|.+.|+.||.|.
T Consensus 2 thsmrlrfptln 13 (14)
T PF08057_consen 2 THSMRLRFPTLN 13 (14)
T ss_pred ccceeeeccccC
Confidence 678899999873
No 107
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=23.01 E-value=61 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHcCCCCCCCC-CHHHHHHhcccC
Q 016606 350 PNCSLAIIDFLFRHGYIRPEYF-GYLDLLQSLRRG 383 (386)
Q Consensus 350 pn~alVlldfl~RhG~i~p~~~-~y~ei~~~l~r~ 383 (386)
..+++-++..|-++|.|+|+|- -..+++..++|.
T Consensus 36 ~~s~l~lf~~Le~~~~l~~~nl~~L~~lL~~i~R~ 70 (77)
T cd00045 36 IKTPFDLFLVLERQGKLGEDNLSYLEELLRSIGRN 70 (77)
T ss_pred cCCHHHHHHHHHHcCCCCCchHHHHHHHHHHcCHH
Confidence 3567788999999999999994 567888888764
Done!