BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016609
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EVY|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4EVY|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4F0Y|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
pdb|4F0Y|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
Length = 166
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 58 LVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLEEW 117
L+A D + + +++ SI+ V + + VG++ G+ V P HRR G+ + L+ + E W
Sbjct: 66 LLAYSDHQAIAMLEASIRFEYVNGT--ETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVW 123
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 88 KVGYVLGLRVAPLHRRKGIGSSLVCKLEEWFTSNDVDYAYM-ATE 131
K GY+L L V P HR +GIG +L + E F + +A + ATE
Sbjct: 86 KRGYILNLYVDPSHRERGIGQALXNRAEAEFAERGIAFAVLHATE 130
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 55 YKMLVAELDR-ELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCK 113
+K VA +R EL+G + I TV D K+ Y+ + V R GIGS+L+ K
Sbjct: 61 HKFFVALNERSELLGHVWICITLDTV-----DYVKIAYIYDIEVVKWARGLGIGSALLRK 115
Query: 114 LEEWFTSNDVDYAYMATEKDNEA 136
EEW + E DN A
Sbjct: 116 AEEWAKERGAKKIVLRVEIDNPA 138
>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 50 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 108
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 109 SKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 168
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 169 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 226
Query: 317 A 317
A
Sbjct: 227 A 227
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 50 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 108
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 109 SKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 168
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 169 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 226
Query: 317 A 317
A
Sbjct: 227 A 227
>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of
Unliganded Human Caspase-3
Length = 257
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
pdb|1CP3|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
Length = 277
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 50 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 108
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 109 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 168
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 169 DCGIETDSG--VDDDMACHKIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 226
Query: 317 A 317
A
Sbjct: 227 A 227
>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
Length = 249
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQAXRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMQ|B Chain B, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMS|A Chain A, Caspase-3 Tethered To Irreversible Inhibitor
pdb|1NMS|B Chain B, Caspase-3 Tethered To Irreversible Inhibitor
Length = 249
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3
Length = 250
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
pdb|3H0E|B Chain B, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
Length = 255
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 50 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 108
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 109 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 168
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 169 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 226
Query: 317 A 317
A
Sbjct: 227 A 227
>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(Pro)caspase-3
Length = 250
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIATDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(pro)caspase-3
Length = 250
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKA-PL 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTAL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|3PD1|A Chain A, Caspase-3 K242a
Length = 250
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant
Length = 250
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQI-------FPKSWAMVSVWNSGELFKLRLGKAP-L 256
K S V GE FG+NG + F + S+ +LF ++ + L
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140
Query: 257 SCLLYTKSSKLIDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHNM 316
C + T S +D + C K+P DF + + Y R +++LC +
Sbjct: 141 DCGIETDSG--VDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 198
Query: 317 A 317
A
Sbjct: 199 A 199
>pdb|3PD0|A Chain A, Caspase-3 E246a
Length = 250
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 28/182 (15%)
Query: 160 VNNRMFH--------TPSNVQIRKLRIEEAENLYYKFMASTEFFPYDIGNILRN------ 205
+NN+ FH + ++V LR E NL Y+ + +I ++R+
Sbjct: 22 INNKNFHKSTGMTSRSGTDVDAANLR-ETFRNLKYEVRNKNDLTREEIVELMRDVSKEDH 80
Query: 206 -KLSLGTWVAYPRGEIVGEFGSNGQIFPKSWAMVSVWNSGELFKLRLGKAPLSCLLYTKS 264
K S V GE FG+NG P ++ + G+ + GK L + +
Sbjct: 81 SKRSSFVCVLLSHGEEGIIFGTNG---PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRG 137
Query: 265 SKL---------IDKFLPCFKLPAIPDFYHPFGFYFMYGMHREGPLSGKMVRTLCQFVHN 315
++L +D + C K+P DF + + Y R +++LC +
Sbjct: 138 TELDSGIETDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQ 197
Query: 316 MA 317
A
Sbjct: 198 YA 199
>pdb|3JVN|A Chain A, Crystal Structure Of The Acetyltransferase Vf_1542 From
Vibrio Fischeri, Northeast Structural Genomics
Consortium Target Vfr136
Length = 166
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 46 ICRIRNSPMYKMLVAELDRELVGVIQGSIKQV--TVQKPHEDLAKVGYVLGLRVAPLHRR 103
I R + P + VAE D ++G I G ++ TV K L + L + +RR
Sbjct: 47 IARYLDDPECXVYVAEXDDVIIGFITGHFCELISTVSK----LVXXATIDELYIEKEYRR 102
Query: 104 KGIGSSLVCKLEEWFTSNDVDYAYMATEKDNEASVKLFVNKLG 146
+G+ L ++E+ V ++ N+ +++ F NK G
Sbjct: 103 EGVAEQLXXRIEQELKDYGVKEIFVEVWDFNKGALE-FYNKQG 144
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 41 TLGDPICRIRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPL 100
T+ DP I + P + +R+L+G I G + + V P D A+ G+ +R PL
Sbjct: 100 TIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSF-MRDGPL 158
Query: 101 HRRKGIGSSLVCKLEEWF-TSNDVDYAYM 128
R + + EW T+ + D A++
Sbjct: 159 DMR--MDPTRGQSAAEWLQTAEEADIAWV 185
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 28 EVGPAERVFLFTDTLGDPICRIRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLA 87
+V E+ +L D N P + +A L +++G I ++K + A
Sbjct: 49 DVPSYEKSYLQNDNEELVYNEYINKPNQIIYIALLHNQIIGFI-------VLKKNWNNYA 101
Query: 88 KVGYVLGLRVAPLHRRKGIGSSLVCKLEEWFTSNDVDYAYMATEKDNEASVKLFVNKLGY 147
Y+ + V +R G+G L+ + ++W + + T+ +N A+ K F K G+
Sbjct: 102 ---YIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLETQNNNVAACK-FYEKCGF 157
Query: 148 V 148
V
Sbjct: 158 V 158
>pdb|1S3Z|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S3Z|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S5K|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S5K|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S60|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 2)
pdb|2VBQ|A Chain A, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine.
pdb|2VBQ|B Chain B, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine
Length = 165
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 58 LVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLEEW 117
+A D +G SI+ V D + V ++ G+ V P R++G+ L+ ++ W
Sbjct: 66 FIAMADGVAIGFADASIRHDYVNGC--DSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRW 123
Query: 118 FTSNDVDYAYMATEKDNEASVKLFVNKLGY 147
T+ T +N S K+ LG+
Sbjct: 124 GTNKGCREMASDTSPENTISQKVH-QALGF 152
>pdb|4E8O|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
pdb|4E8O|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
Length = 167
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 49 IRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGS 108
I + ++L ++ + +++ SI+ V + V ++ G+ V P +RR GI +
Sbjct: 58 ITQAHRLQLLAYTDTQQAIAMLEASIRYEYVNGTQT--SPVAFLEGIFVLPEYRRSGIAT 115
Query: 109 SLVCKLEEW 117
LV ++E W
Sbjct: 116 GLVQQVEIW 124
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 167 TPSNVQIRKLRIEEAENLYYK----FMASTEFFPYDIGNI 202
T +VQ ++R+E +N+Y++ F A TEF+ D +I
Sbjct: 228 TSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDI 267
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 147 YVNFRTPAILVHPVNNRMFHTPSNVQIRKLRIEEAENLYYKFMASTEFFPYD 198
Y NFR P + H + + S ++ KL I ++NL + +EF PY+
Sbjct: 165 YQNFRDPFVFWHDESQKWVVVTSIAELHKLAIYTSDNL-KDWKLVSEFGPYN 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,853,486
Number of Sequences: 62578
Number of extensions: 499796
Number of successful extensions: 879
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 30
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)