BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016610
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
KR R++ N+ +A + R R++ + L + D L DE ++L++EI L + EKL
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 12 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 11 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 55
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 6 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 7 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 53
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
+K ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 59
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300
QN + L +ER+ R S + L AE EE ++ + L +++ S+ SE+ + EK
Sbjct: 998 QNNK-LTKERKLLEERVSDLTTNL---AEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 301 LRQENAALLEKLKSAQLGNKQEI 323
RQE LEK+K G ++
Sbjct: 1054 SRQE----LEKIKRKLEGESSDL 1072
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305
LK++RR NR A+ R ++ + L + LI + LK E+++L+ R+ +
Sbjct: 30 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA------RERD 83
Query: 306 AALLEKLKSAQLGN 319
A K+KS +L N
Sbjct: 84 AY---KVKSEKLAN 94
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301
+KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 90
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305
LK++RR NR A+ R ++ + L + LI + LK E+++L+ R+ +
Sbjct: 26 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA------RERD 79
Query: 306 AALLEKLKSAQLGN 319
A K+KS +L N
Sbjct: 80 AY---KVKSEKLAN 90
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
Length = 107
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 220 VKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRK--- 276
V S + Q L E IQ LK+ RR NR A R+++ + EEL ++
Sbjct: 14 VTXSVRELNQHLRGLSKEEIIQ----LKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAE 69
Query: 277 ----VDSLIDENASLKSEINQLSENSEKL 301
V+ L ENAS K E++ L E L
Sbjct: 70 LQQEVEKLASENASXKLELDALRSKYEAL 98
>pdb|3SSU|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
pdb|3SSU|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
Length = 93
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
+ E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|3S4R|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
pdb|3S4R|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
Length = 93
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304
+ E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296
KRE R NRE+AR SR +K+ + L +V L ++N +L E+ L +
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.125 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,106,385
Number of Sequences: 62578
Number of extensions: 370942
Number of successful extensions: 895
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 64
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)