Query 016610
Match_columns 386
No_of_seqs 194 out of 933
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 8.8E-72 1.9E-76 511.5 15.4 179 1-180 1-189 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 2.3E-13 4.9E-18 104.9 9.4 64 243-306 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 9.7E-13 2.1E-17 101.5 9.2 61 245-305 3-63 (65)
4 KOG3584 cAMP response element 99.3 6.6E-12 1.4E-16 122.9 7.6 67 234-300 278-344 (348)
5 KOG4343 bZIP transcription fac 99.2 3E-11 6.5E-16 125.7 9.6 70 241-310 275-344 (655)
6 KOG4005 Transcription factor X 99.2 2E-10 4.4E-15 110.2 10.6 71 245-315 67-137 (292)
7 KOG0709 CREB/ATF family transc 99.1 6.2E-11 1.3E-15 121.8 7.0 81 234-314 236-318 (472)
8 PF07716 bZIP_2: Basic region 99.1 4.5E-10 9.6E-15 84.4 8.8 51 246-297 4-54 (54)
9 KOG0837 Transcriptional activa 98.6 2.2E-07 4.7E-12 90.4 9.4 65 236-300 195-259 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 4.4E-09 9.4E-14 86.9 -6.8 68 241-308 24-91 (92)
11 KOG3119 Basic region leucine z 98.0 2.3E-05 5E-10 76.3 8.7 52 251-302 198-249 (269)
12 KOG4571 Activating transcripti 97.9 7.3E-05 1.6E-09 74.0 10.1 53 250-302 230-282 (294)
13 KOG4196 bZIP transcription fac 97.7 0.00034 7.4E-09 62.4 9.9 70 242-318 48-117 (135)
14 KOG3863 bZIP transcription fac 97.2 0.00068 1.5E-08 72.8 6.7 63 247-309 490-552 (604)
15 PRK10884 SH3 domain-containing 96.7 0.02 4.3E-07 54.3 11.6 72 243-314 99-171 (206)
16 PF06156 DUF972: Protein of un 96.6 0.011 2.4E-07 50.9 7.9 50 268-317 8-57 (107)
17 PRK13169 DNA replication intia 96.3 0.021 4.6E-07 49.6 7.9 48 268-315 8-55 (110)
18 PF10224 DUF2205: Predicted co 96.2 0.029 6.3E-07 46.3 8.1 46 270-315 18-63 (80)
19 PF06005 DUF904: Protein of un 96.2 0.035 7.5E-07 44.9 8.2 49 268-316 4-52 (72)
20 TIGR02894 DNA_bind_RsfA transc 95.4 0.063 1.4E-06 49.6 7.7 77 240-316 59-138 (161)
21 PRK13729 conjugal transfer pil 95.4 0.074 1.6E-06 56.3 9.1 49 267-315 75-123 (475)
22 PRK10884 SH3 domain-containing 95.3 0.26 5.6E-06 46.9 11.7 62 261-322 111-172 (206)
23 COG3074 Uncharacterized protei 95.2 0.071 1.5E-06 43.6 6.5 48 269-316 19-66 (79)
24 TIGR02449 conserved hypothetic 95.1 0.11 2.4E-06 41.5 7.2 45 270-314 2-46 (65)
25 TIGR02449 conserved hypothetic 95.1 0.15 3.3E-06 40.7 8.0 48 268-315 7-54 (65)
26 PF04102 SlyX: SlyX; InterPro 94.9 0.14 3.1E-06 40.6 7.2 50 267-316 3-52 (69)
27 PF06005 DUF904: Protein of un 94.8 0.21 4.6E-06 40.4 8.2 45 270-314 20-64 (72)
28 COG4026 Uncharacterized protei 94.7 0.19 4.1E-06 49.2 8.9 55 261-315 135-189 (290)
29 PF08614 ATG16: Autophagy prot 94.6 0.6 1.3E-05 43.2 11.9 68 248-315 117-184 (194)
30 COG4467 Regulator of replicati 94.5 0.13 2.8E-06 45.0 6.6 47 268-314 8-54 (114)
31 PF13747 DUF4164: Domain of un 94.3 0.85 1.8E-05 38.1 11.0 74 242-315 6-79 (89)
32 PRK00295 hypothetical protein; 94.1 0.37 8E-06 38.4 8.1 49 268-316 5-53 (68)
33 PRK02793 phi X174 lysis protei 94.1 0.34 7.4E-06 39.0 8.0 51 267-317 7-57 (72)
34 PRK02119 hypothetical protein; 94.1 0.34 7.3E-06 39.1 7.8 50 267-316 8-57 (73)
35 KOG4005 Transcription factor X 94.0 0.53 1.1E-05 46.4 10.5 48 268-315 97-144 (292)
36 KOG1414 Transcriptional activa 94.0 0.0024 5.2E-08 65.3 -5.7 62 240-301 147-212 (395)
37 PRK04325 hypothetical protein; 94.0 0.37 8.1E-06 38.9 8.0 49 268-316 9-57 (74)
38 PRK15422 septal ring assembly 94.0 0.3 6.5E-06 40.5 7.4 48 269-316 19-66 (79)
39 PRK00736 hypothetical protein; 94.0 0.41 8.8E-06 38.1 8.0 50 268-317 5-54 (68)
40 PF02183 HALZ: Homeobox associ 93.9 0.19 4E-06 37.4 5.6 38 279-316 2-39 (45)
41 PRK04406 hypothetical protein; 93.8 0.44 9.5E-06 38.8 8.0 49 268-316 11-59 (75)
42 PF11559 ADIP: Afadin- and alp 93.7 1.1 2.4E-05 39.6 11.4 70 246-315 44-113 (151)
43 PF11932 DUF3450: Protein of u 93.6 0.83 1.8E-05 43.7 11.0 45 271-315 52-96 (251)
44 PF06156 DUF972: Protein of un 93.3 0.38 8.2E-06 41.6 7.3 46 272-317 5-50 (107)
45 TIGR00219 mreC rod shape-deter 93.2 0.18 4E-06 49.6 6.0 40 276-315 67-110 (283)
46 PF10473 CENP-F_leu_zip: Leuci 93.0 1.9 4.1E-05 39.1 11.7 66 251-316 35-100 (140)
47 PRK00846 hypothetical protein; 93.0 0.71 1.5E-05 38.1 8.1 51 267-317 12-62 (77)
48 KOG0982 Centrosomal protein Nu 92.9 0.78 1.7E-05 48.4 10.1 51 266-316 295-345 (502)
49 PF10186 Atg14: UV radiation r 92.6 1.7 3.6E-05 41.2 11.4 50 264-313 59-108 (302)
50 PRK11637 AmiB activator; Provi 92.3 1.8 3.9E-05 44.4 12.0 51 265-315 72-122 (428)
51 COG3074 Uncharacterized protei 92.3 0.83 1.8E-05 37.5 7.5 51 265-315 22-72 (79)
52 PRK15422 septal ring assembly 92.2 0.78 1.7E-05 38.1 7.4 38 270-307 6-43 (79)
53 PRK13922 rod shape-determining 92.2 0.96 2.1E-05 43.6 9.3 40 276-315 70-112 (276)
54 PF07106 TBPIP: Tat binding pr 92.1 0.79 1.7E-05 41.4 8.2 52 266-317 84-137 (169)
55 PF09726 Macoilin: Transmembra 92.1 1.1 2.4E-05 49.6 10.9 41 271-311 541-581 (697)
56 KOG3650 Predicted coiled-coil 92.1 0.63 1.4E-05 40.5 7.1 40 276-315 64-103 (120)
57 PF04880 NUDE_C: NUDE protein, 92.1 0.23 5E-06 46.1 4.8 42 270-315 2-43 (166)
58 PRK11637 AmiB activator; Provi 91.9 1.9 4E-05 44.4 11.6 57 260-316 60-116 (428)
59 KOG1962 B-cell receptor-associ 91.9 0.75 1.6E-05 44.5 8.1 47 267-313 164-210 (216)
60 PF08172 CASP_C: CASP C termin 91.8 0.72 1.6E-05 45.1 8.0 44 276-319 94-137 (248)
61 PF02183 HALZ: Homeobox associ 91.5 0.87 1.9E-05 33.8 6.3 41 273-313 3-43 (45)
62 KOG4196 bZIP transcription fac 91.5 0.67 1.5E-05 41.8 6.8 50 266-315 45-107 (135)
63 smart00338 BRLZ basic region l 91.5 1.9 4.2E-05 33.1 8.6 40 274-313 25-64 (65)
64 PRK13169 DNA replication intia 91.3 0.91 2E-05 39.6 7.3 47 271-317 4-50 (110)
65 PF12711 Kinesin-relat_1: Kine 90.8 1.2 2.6E-05 37.4 7.2 39 278-316 20-64 (86)
66 PF11932 DUF3450: Protein of u 90.7 4.2 9.1E-05 39.0 12.0 54 262-315 50-103 (251)
67 PF00170 bZIP_1: bZIP transcri 90.7 3 6.6E-05 32.0 9.0 37 275-311 26-62 (64)
68 PF11559 ADIP: Afadin- and alp 90.7 4.6 0.0001 35.7 11.3 44 270-313 75-118 (151)
69 KOG3335 Predicted coiled-coil 90.6 0.35 7.6E-06 45.5 4.3 42 248-295 92-133 (181)
70 TIGR03752 conj_TIGR03752 integ 90.5 0.95 2.1E-05 48.1 7.9 29 284-312 111-139 (472)
71 PF04728 LPP: Lipoprotein leuc 90.5 2.5 5.3E-05 33.1 8.2 48 268-315 3-50 (56)
72 PRK00888 ftsB cell division pr 90.4 1.1 2.4E-05 38.4 6.9 33 264-296 30-62 (105)
73 PF14197 Cep57_CLD_2: Centroso 90.3 2.1 4.4E-05 34.4 7.9 48 268-315 12-66 (69)
74 PF12718 Tropomyosin_1: Tropom 90.2 1.5 3.3E-05 39.3 7.9 49 267-315 13-61 (143)
75 PF14197 Cep57_CLD_2: Centroso 89.5 2.4 5.3E-05 34.0 7.8 22 273-294 10-31 (69)
76 PF01166 TSC22: TSC-22/dip/bun 89.4 0.46 1E-05 37.5 3.4 33 282-314 14-46 (59)
77 PF05103 DivIVA: DivIVA protei 89.2 0.2 4.4E-06 42.5 1.6 50 267-316 24-73 (131)
78 KOG0977 Nuclear envelope prote 89.0 1.5 3.2E-05 47.5 8.1 69 257-325 130-198 (546)
79 COG1579 Zn-ribbon protein, pos 88.8 3.9 8.3E-05 40.1 10.1 50 266-315 87-136 (239)
80 KOG2236 Uncharacterized conser 88.8 0.55 1.2E-05 49.8 4.6 32 44-84 420-454 (483)
81 PRK02119 hypothetical protein; 88.8 3.1 6.7E-05 33.6 8.0 51 269-319 3-55 (73)
82 PRK10803 tol-pal system protei 88.8 3.4 7.3E-05 40.4 9.8 47 269-315 55-101 (263)
83 PHA02562 46 endonuclease subun 88.7 4.1 8.9E-05 42.4 11.0 28 277-304 367-394 (562)
84 KOG1414 Transcriptional activa 88.7 0.097 2.1E-06 53.8 -0.9 41 248-288 286-326 (395)
85 PF13851 GAS: Growth-arrest sp 88.7 7.8 0.00017 36.6 11.8 61 242-302 67-127 (201)
86 PF05266 DUF724: Protein of un 88.6 6.6 0.00014 37.0 11.2 29 252-280 94-122 (190)
87 COG4942 Membrane-bound metallo 88.6 5.1 0.00011 42.3 11.4 72 247-318 38-109 (420)
88 KOG2264 Exostosin EXT1L [Signa 88.5 1.8 3.8E-05 47.5 8.2 53 267-319 92-144 (907)
89 KOG1962 B-cell receptor-associ 88.5 3.6 7.7E-05 39.9 9.5 44 273-316 149-192 (216)
90 PRK04406 hypothetical protein; 88.4 3.5 7.5E-05 33.6 8.1 46 270-315 6-51 (75)
91 PF07888 CALCOCO1: Calcium bin 88.4 5.6 0.00012 43.2 11.9 12 53-64 28-39 (546)
92 PF03962 Mnd1: Mnd1 family; I 88.4 3 6.6E-05 39.0 8.8 51 264-315 79-129 (188)
93 KOG1853 LIS1-interacting prote 88.3 3.1 6.6E-05 41.7 9.1 93 268-363 52-160 (333)
94 COG2433 Uncharacterized conser 88.2 1.7 3.7E-05 47.6 7.9 45 269-313 423-467 (652)
95 PF05700 BCAS2: Breast carcino 88.1 6.4 0.00014 37.4 10.9 55 261-316 162-216 (221)
96 PF08317 Spc7: Spc7 kinetochor 88.1 4.8 0.0001 40.2 10.6 47 268-314 209-255 (325)
97 PF09755 DUF2046: Uncharacteri 88.0 1.4 3E-05 44.7 6.8 46 271-316 23-68 (310)
98 PF10805 DUF2730: Protein of u 87.9 2.3 4.9E-05 36.4 7.1 42 274-315 48-91 (106)
99 KOG1029 Endocytic adaptor prot 87.8 4.4 9.5E-05 45.9 10.8 17 298-314 439-455 (1118)
100 PF12325 TMF_TATA_bd: TATA ele 87.8 3.8 8.2E-05 36.2 8.5 22 273-294 35-56 (120)
101 COG2900 SlyX Uncharacterized p 87.6 4.2 9.1E-05 33.4 8.0 52 267-318 7-58 (72)
102 PF15294 Leu_zip: Leucine zipp 87.6 1.7 3.8E-05 43.4 7.0 45 273-317 130-174 (278)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.5 8.4 0.00018 33.8 10.6 30 285-314 101-130 (132)
104 KOG3119 Basic region leucine z 87.4 4 8.6E-05 40.2 9.4 61 240-300 190-254 (269)
105 PF06785 UPF0242: Uncharacteri 87.2 5.2 0.00011 41.4 10.2 53 263-315 122-174 (401)
106 COG4026 Uncharacterized protei 87.2 2.8 6.1E-05 41.3 8.0 44 270-313 137-180 (290)
107 PF04111 APG6: Autophagy prote 87.1 2.6 5.6E-05 42.3 8.1 43 271-313 46-88 (314)
108 PF07989 Microtub_assoc: Micro 87.1 3 6.5E-05 33.9 7.0 47 270-316 2-56 (75)
109 PRK00888 ftsB cell division pr 87.1 2.4 5.2E-05 36.3 6.7 36 269-304 28-63 (105)
110 PF04977 DivIC: Septum formati 87.0 3.9 8.5E-05 31.6 7.4 29 266-294 22-50 (80)
111 COG1579 Zn-ribbon protein, pos 86.9 8.9 0.00019 37.6 11.3 67 249-315 33-108 (239)
112 COG4467 Regulator of replicati 86.9 2.7 5.9E-05 37.0 7.0 45 272-316 5-49 (114)
113 PF05266 DUF724: Protein of un 86.8 7.8 0.00017 36.6 10.6 53 264-316 127-179 (190)
114 PF09789 DUF2353: Uncharacteri 86.8 4.1 8.9E-05 41.5 9.3 49 271-319 68-116 (319)
115 PF05529 Bap31: B-cell recepto 86.7 5.1 0.00011 36.8 9.2 37 280-316 152-188 (192)
116 PF05377 FlaC_arch: Flagella a 86.6 2.9 6.2E-05 32.6 6.2 33 270-302 2-34 (55)
117 PF08172 CASP_C: CASP C termin 86.5 2.8 6E-05 41.1 7.7 45 268-312 93-137 (248)
118 PF12709 Kinetocho_Slk19: Cent 86.5 3.8 8.3E-05 34.6 7.4 43 266-308 40-82 (87)
119 KOG4571 Activating transcripti 86.3 4.6 0.0001 40.8 9.1 58 245-302 229-289 (294)
120 PF10186 Atg14: UV radiation r 85.9 13 0.00028 35.2 11.7 36 263-298 65-100 (302)
121 PRK02793 phi X174 lysis protei 85.9 5.5 0.00012 32.1 7.8 52 271-322 4-57 (72)
122 PF10473 CENP-F_leu_zip: Leuci 85.7 16 0.00034 33.3 11.5 75 241-315 7-85 (140)
123 PF14662 CCDC155: Coiled-coil 85.6 3.2 6.9E-05 39.6 7.3 36 280-315 20-55 (193)
124 PF09738 DUF2051: Double stran 85.5 3.5 7.6E-05 41.6 8.0 73 243-315 88-166 (302)
125 PF09744 Jnk-SapK_ap_N: JNK_SA 85.3 6.3 0.00014 36.3 8.9 16 279-294 86-101 (158)
126 PF12808 Mto2_bdg: Micro-tubul 85.3 2.8 6E-05 32.3 5.5 48 266-316 2-49 (52)
127 KOG0250 DNA repair protein RAD 85.2 6.5 0.00014 45.6 10.8 57 259-315 370-427 (1074)
128 KOG0995 Centromere-associated 85.0 6 0.00013 43.2 9.9 48 267-314 279-326 (581)
129 PF12329 TMF_DNA_bd: TATA elem 85.0 6.7 0.00014 31.7 7.9 51 265-315 9-59 (74)
130 TIGR02894 DNA_bind_RsfA transc 84.9 4.2 9.1E-05 37.9 7.6 36 266-301 109-144 (161)
131 PF09304 Cortex-I_coil: Cortex 84.9 7.2 0.00016 34.2 8.6 58 249-306 18-75 (107)
132 KOG4797 Transcriptional regula 84.8 1.5 3.3E-05 38.7 4.4 28 283-310 68-95 (123)
133 PRK00295 hypothetical protein; 84.8 6 0.00013 31.5 7.5 43 273-315 3-45 (68)
134 PF04156 IncA: IncA protein; 84.6 19 0.0004 32.7 11.7 20 276-295 131-150 (191)
135 PF13815 Dzip-like_N: Iguana/D 84.5 3.1 6.8E-05 35.9 6.3 39 273-311 78-116 (118)
136 KOG2391 Vacuolar sorting prote 84.3 8.8 0.00019 39.7 10.2 51 264-314 228-278 (365)
137 PF05278 PEARLI-4: Arabidopsis 84.2 14 0.00031 36.9 11.4 50 267-316 206-255 (269)
138 PF08232 Striatin: Striatin fa 84.1 8 0.00017 34.4 8.8 46 271-316 28-73 (134)
139 PF07407 Seadorna_VP6: Seadorn 83.9 1.9 4.1E-05 44.5 5.3 25 277-301 34-58 (420)
140 PF14662 CCDC155: Coiled-coil 83.8 6.8 0.00015 37.5 8.6 40 273-312 100-139 (193)
141 PF09304 Cortex-I_coil: Cortex 83.8 23 0.00049 31.1 11.1 50 263-312 25-74 (107)
142 PF07106 TBPIP: Tat binding pr 83.6 3.9 8.5E-05 36.9 6.8 48 269-316 80-129 (169)
143 PF08647 BRE1: BRE1 E3 ubiquit 83.5 18 0.00039 30.3 10.3 65 251-315 7-71 (96)
144 PF08826 DMPK_coil: DMPK coile 83.5 12 0.00025 29.7 8.5 44 273-316 16-59 (61)
145 KOG1103 Predicted coiled-coil 83.5 4.7 0.0001 42.1 8.0 60 257-316 227-286 (561)
146 PF05377 FlaC_arch: Flagella a 83.5 4.1 8.9E-05 31.8 5.8 38 277-314 2-39 (55)
147 PF08826 DMPK_coil: DMPK coile 83.5 19 0.00041 28.6 9.6 37 267-303 24-60 (61)
148 PF04871 Uso1_p115_C: Uso1 / p 83.3 20 0.00044 32.0 11.1 46 270-315 64-110 (136)
149 PF13118 DUF3972: Protein of u 83.1 4.8 0.0001 36.1 7.0 47 270-316 80-126 (126)
150 PF08614 ATG16: Autophagy prot 83.0 17 0.00036 33.8 10.8 47 270-316 125-171 (194)
151 PRK09039 hypothetical protein; 82.7 9.5 0.00021 38.7 9.8 16 280-295 142-157 (343)
152 PF10226 DUF2216: Uncharacteri 82.6 10 0.00022 36.3 9.3 75 242-316 18-121 (195)
153 PF13851 GAS: Growth-arrest sp 82.6 20 0.00044 33.8 11.4 46 269-314 87-132 (201)
154 TIGR03545 conserved hypothetic 82.6 3.9 8.4E-05 44.3 7.4 75 240-314 160-237 (555)
155 PRK00846 hypothetical protein; 81.9 9.4 0.0002 31.5 7.7 46 270-315 8-53 (77)
156 PF15397 DUF4618: Domain of un 81.9 21 0.00046 35.5 11.6 81 244-326 141-232 (258)
157 PF01486 K-box: K-box region; 81.9 20 0.00042 29.9 9.9 46 268-313 49-99 (100)
158 COG3883 Uncharacterized protei 81.9 6.3 0.00014 39.3 8.0 64 253-316 44-111 (265)
159 PRK03918 chromosome segregatio 81.8 16 0.00035 40.4 11.9 14 139-152 24-37 (880)
160 PRK04325 hypothetical protein; 81.8 7.6 0.00016 31.4 7.1 47 269-315 3-49 (74)
161 PF04977 DivIC: Septum formati 81.6 5.7 0.00012 30.8 6.2 31 271-301 20-50 (80)
162 PF10211 Ax_dynein_light: Axon 81.6 13 0.00028 34.8 9.6 43 270-312 122-164 (189)
163 COG2433 Uncharacterized conser 81.6 9.5 0.0002 42.1 9.7 44 253-296 420-464 (652)
164 KOG2010 Double stranded RNA bi 81.5 5.4 0.00012 41.2 7.5 48 267-314 153-200 (405)
165 PHA02562 46 endonuclease subun 81.3 15 0.00033 38.3 11.0 6 269-274 338-343 (562)
166 KOG2391 Vacuolar sorting prote 81.3 10 0.00022 39.3 9.3 71 243-315 216-286 (365)
167 PRK14127 cell division protein 81.1 3.8 8.3E-05 35.8 5.5 34 268-301 30-63 (109)
168 PF10211 Ax_dynein_light: Axon 81.1 13 0.00028 34.8 9.4 17 271-287 130-146 (189)
169 PF07888 CALCOCO1: Calcium bin 81.0 20 0.00043 39.2 11.9 6 81-86 15-20 (546)
170 PF04102 SlyX: SlyX; InterPro 81.0 11 0.00023 30.0 7.5 45 272-316 1-45 (69)
171 PRK14160 heat shock protein Gr 80.9 8.6 0.00019 37.1 8.3 48 267-314 53-100 (211)
172 KOG0977 Nuclear envelope prote 80.9 10 0.00022 41.3 9.8 59 252-310 132-190 (546)
173 TIGR03752 conj_TIGR03752 integ 80.9 5.7 0.00012 42.5 7.7 45 271-315 76-135 (472)
174 PRK13729 conjugal transfer pil 80.9 5.2 0.00011 42.8 7.4 47 267-313 82-128 (475)
175 KOG0946 ER-Golgi vesicle-tethe 80.6 14 0.00031 42.1 10.8 66 250-315 653-718 (970)
176 KOG0971 Microtubule-associated 80.3 19 0.00041 41.7 11.8 46 271-316 328-388 (1243)
177 PF10205 KLRAQ: Predicted coil 80.3 17 0.00037 31.6 9.1 42 275-316 26-67 (102)
178 smart00340 HALZ homeobox assoc 80.3 3.6 7.7E-05 30.8 4.3 25 292-316 8-32 (44)
179 PF14988 DUF4515: Domain of un 80.2 20 0.00044 34.2 10.5 48 270-317 151-198 (206)
180 PF10805 DUF2730: Protein of u 80.0 22 0.00047 30.4 9.6 50 266-315 47-98 (106)
181 TIGR02209 ftsL_broad cell divi 79.9 7.4 0.00016 30.9 6.4 29 266-294 29-57 (85)
182 PRK00736 hypothetical protein; 79.9 12 0.00026 29.8 7.6 43 273-315 3-45 (68)
183 PF07412 Geminin: Geminin; In 79.8 5.1 0.00011 38.5 6.3 34 282-315 125-158 (200)
184 PF07558 Shugoshin_N: Shugoshi 79.8 2 4.4E-05 31.9 2.9 35 278-312 10-44 (46)
185 PF07558 Shugoshin_N: Shugoshi 79.8 2 4.4E-05 31.9 2.9 43 248-291 2-44 (46)
186 KOG4343 bZIP transcription fac 79.6 7.6 0.00017 42.4 8.2 68 238-316 269-336 (655)
187 PF15556 Zwint: ZW10 interacto 79.2 33 0.00072 33.6 11.5 62 253-314 119-180 (252)
188 PF10669 Phage_Gp23: Protein g 79.1 18 0.0004 31.7 8.9 48 239-290 47-94 (121)
189 PF15035 Rootletin: Ciliary ro 78.9 8.9 0.00019 36.0 7.6 41 274-314 73-113 (182)
190 PF09726 Macoilin: Transmembra 78.9 1.2E+02 0.0026 34.2 22.7 39 275-313 460-498 (697)
191 KOG1853 LIS1-interacting prote 78.9 18 0.00039 36.5 9.9 55 260-314 125-182 (333)
192 PF05529 Bap31: B-cell recepto 78.8 13 0.00029 34.1 8.6 28 273-300 159-186 (192)
193 PRK15396 murein lipoprotein; P 78.8 14 0.00029 30.7 7.7 47 269-315 26-72 (78)
194 TIGR02231 conserved hypothetic 78.7 24 0.00052 37.3 11.6 45 272-316 128-172 (525)
195 PF12325 TMF_TATA_bd: TATA ele 78.7 38 0.00082 30.0 11.0 45 243-287 19-63 (120)
196 PF01166 TSC22: TSC-22/dip/bun 78.7 2.3 4.9E-05 33.7 3.0 28 269-296 15-42 (59)
197 PF09730 BicD: Microtubule-ass 78.7 17 0.00037 40.9 10.8 39 276-314 98-146 (717)
198 PF10224 DUF2205: Predicted co 78.7 10 0.00022 31.5 7.0 37 267-303 29-65 (80)
199 PF09744 Jnk-SapK_ap_N: JNK_SA 78.7 20 0.00043 33.1 9.6 43 273-315 94-136 (158)
200 PRK04863 mukB cell division pr 78.5 25 0.00053 42.6 12.7 19 330-348 431-449 (1486)
201 PF04156 IncA: IncA protein; 78.4 39 0.00086 30.6 11.5 57 258-314 120-176 (191)
202 PF14282 FlxA: FlxA-like prote 78.4 8 0.00017 33.0 6.5 44 271-314 29-76 (106)
203 cd07596 BAR_SNX The Bin/Amphip 78.4 27 0.00058 31.3 10.3 52 248-299 111-169 (218)
204 PF04859 DUF641: Plant protein 78.2 7.1 0.00015 35.1 6.4 42 270-311 89-130 (131)
205 KOG0709 CREB/ATF family transc 78.0 6.3 0.00014 42.1 6.9 44 277-320 274-317 (472)
206 PF04849 HAP1_N: HAP1 N-termin 78.0 6.2 0.00013 40.1 6.6 52 267-318 198-249 (306)
207 PRK14162 heat shock protein Gr 77.9 9.5 0.00021 36.3 7.5 11 367-377 149-159 (194)
208 PF00038 Filament: Intermediat 77.9 32 0.00069 33.4 11.4 41 276-316 210-250 (312)
209 PF15030 DUF4527: Protein of u 77.9 24 0.00051 35.3 10.3 25 243-267 11-35 (277)
210 COG1382 GimC Prefoldin, chaper 77.9 10 0.00022 33.7 7.2 40 265-304 67-106 (119)
211 PF04728 LPP: Lipoprotein leuc 77.8 13 0.00028 29.2 6.9 38 275-312 3-40 (56)
212 KOG0933 Structural maintenance 77.7 20 0.00043 41.9 11.0 52 265-316 812-863 (1174)
213 PF15070 GOLGA2L5: Putative go 77.5 16 0.00034 40.4 10.0 19 265-283 119-137 (617)
214 PF02403 Seryl_tRNA_N: Seryl-t 77.4 36 0.00078 28.3 10.1 41 275-315 43-86 (108)
215 PRK12705 hypothetical protein; 77.4 23 0.00049 38.3 10.9 29 273-301 93-121 (508)
216 PRK14161 heat shock protein Gr 77.3 9.8 0.00021 35.6 7.3 46 269-314 13-58 (178)
217 PRK10803 tol-pal system protei 77.2 8.5 0.00018 37.6 7.2 51 262-312 55-105 (263)
218 PF03670 UPF0184: Uncharacteri 77.2 18 0.00039 30.4 8.0 46 270-315 28-73 (83)
219 COG3883 Uncharacterized protei 77.2 12 0.00026 37.4 8.2 50 266-315 50-99 (265)
220 PF15058 Speriolin_N: Sperioli 77.2 5.6 0.00012 38.1 5.7 38 270-315 7-44 (200)
221 PF03980 Nnf1: Nnf1 ; InterPr 77.1 3.9 8.5E-05 34.4 4.3 30 266-295 78-107 (109)
222 PF05667 DUF812: Protein of un 77.1 11 0.00024 41.3 8.7 46 268-313 335-380 (594)
223 TIGR02209 ftsL_broad cell divi 77.0 8.6 0.00019 30.5 6.0 34 282-315 24-57 (85)
224 PF11180 DUF2968: Protein of u 76.7 39 0.00086 32.4 11.2 73 243-316 102-174 (192)
225 KOG2077 JNK/SAPK-associated pr 76.7 5.9 0.00013 43.6 6.4 45 271-315 325-369 (832)
226 KOG0804 Cytoplasmic Zn-finger 76.6 23 0.0005 38.0 10.5 76 250-326 367-450 (493)
227 PRK02224 chromosome segregatio 76.5 27 0.00059 38.8 11.7 49 264-312 505-553 (880)
228 KOG4643 Uncharacterized coiled 76.4 19 0.00042 41.9 10.5 47 250-296 500-558 (1195)
229 PRK14154 heat shock protein Gr 76.2 10 0.00022 36.5 7.2 13 367-379 164-176 (208)
230 PTZ00454 26S protease regulato 76.0 11 0.00023 39.2 7.8 36 273-308 27-62 (398)
231 PF13863 DUF4200: Domain of un 76.0 29 0.00064 29.4 9.4 30 286-315 78-107 (126)
232 smart00340 HALZ homeobox assoc 76.0 6.1 0.00013 29.6 4.4 28 269-296 6-33 (44)
233 PF11500 Cut12: Spindle pole b 75.9 25 0.00055 32.5 9.4 56 243-298 80-135 (152)
234 PHA02682 ORF080 virion core pr 75.9 7.9 0.00017 37.7 6.4 66 267-348 214-279 (280)
235 PF12718 Tropomyosin_1: Tropom 75.8 15 0.00033 33.0 7.9 51 265-315 32-85 (143)
236 PF13815 Dzip-like_N: Iguana/D 75.8 11 0.00023 32.6 6.6 40 277-316 75-114 (118)
237 PRK14143 heat shock protein Gr 75.4 7.6 0.00016 38.0 6.3 12 367-378 178-189 (238)
238 PF04568 IATP: Mitochondrial A 75.4 16 0.00035 31.5 7.6 46 253-298 54-99 (100)
239 KOG2129 Uncharacterized conser 75.2 4.2 9E-05 43.2 4.7 49 271-319 46-94 (552)
240 PRK03992 proteasome-activating 75.1 10 0.00022 38.7 7.5 44 272-315 5-48 (389)
241 PF07716 bZIP_2: Basic region 75.0 27 0.0006 26.1 7.9 25 291-315 27-51 (54)
242 COG1792 MreC Cell shape-determ 75.0 11 0.00024 37.3 7.5 47 266-316 64-110 (284)
243 PF14645 Chibby: Chibby family 74.8 13 0.00028 32.7 6.9 42 271-312 74-115 (116)
244 PF11382 DUF3186: Protein of u 74.7 13 0.00028 37.2 7.9 107 268-376 32-138 (308)
245 PF06810 Phage_GP20: Phage min 74.6 33 0.00071 31.3 9.8 34 266-299 32-68 (155)
246 TIGR02977 phageshock_pspA phag 74.6 29 0.00063 32.8 9.8 50 267-316 98-147 (219)
247 PF08961 DUF1875: Domain of un 74.4 1 2.2E-05 44.0 0.0 42 267-308 121-162 (243)
248 PRK14158 heat shock protein Gr 74.3 15 0.00033 34.9 7.8 13 367-379 150-162 (194)
249 KOG0980 Actin-binding protein 74.3 27 0.00059 40.2 10.8 67 250-316 448-514 (980)
250 PF10828 DUF2570: Protein of u 74.1 50 0.0011 28.2 10.3 73 270-343 34-108 (110)
251 PF12709 Kinetocho_Slk19: Cent 73.9 11 0.00024 31.9 6.1 48 268-315 27-75 (87)
252 PF14915 CCDC144C: CCDC144C pr 73.9 24 0.00052 35.9 9.5 61 256-316 181-241 (305)
253 PTZ00454 26S protease regulato 73.8 14 0.0003 38.3 8.0 44 273-316 20-63 (398)
254 COG4942 Membrane-bound metallo 73.6 25 0.00055 37.3 9.9 31 268-298 66-96 (420)
255 PRK14148 heat shock protein Gr 73.5 8.9 0.00019 36.5 6.1 39 275-313 40-78 (195)
256 KOG3248 Transcription factor T 73.5 11 0.00025 39.1 7.2 77 27-105 72-161 (421)
257 PF14817 HAUS5: HAUS augmin-li 73.4 14 0.00031 40.8 8.4 13 371-383 211-223 (632)
258 PF08537 NBP1: Fungal Nap bind 73.3 40 0.00087 34.7 11.0 26 245-270 120-145 (323)
259 PF11365 DUF3166: Protein of u 73.2 13 0.00028 32.0 6.4 38 279-316 5-42 (96)
260 COG1730 GIM5 Predicted prefold 73.1 18 0.0004 33.0 7.7 43 271-313 97-139 (145)
261 KOG2264 Exostosin EXT1L [Signa 72.8 34 0.00074 38.1 10.8 68 256-323 88-155 (907)
262 TIGR00606 rad50 rad50. This fa 72.6 31 0.00067 40.8 11.4 14 260-273 849-862 (1311)
263 COG4238 Murein lipoprotein [Ce 72.5 22 0.00048 29.6 7.3 48 268-315 25-72 (78)
264 PRK14155 heat shock protein Gr 72.5 11 0.00025 36.1 6.6 13 367-379 127-139 (208)
265 smart00787 Spc7 Spc7 kinetocho 72.4 49 0.0011 33.5 11.4 38 269-306 205-242 (312)
266 PF10146 zf-C4H2: Zinc finger- 72.2 91 0.002 30.4 12.7 43 274-316 59-101 (230)
267 PF00038 Filament: Intermediat 72.1 64 0.0014 31.4 11.8 78 238-315 48-136 (312)
268 KOG1318 Helix loop helix trans 72.0 58 0.0012 34.6 12.0 36 242-277 224-259 (411)
269 TIGR02231 conserved hypothetic 71.9 46 0.001 35.2 11.6 40 277-316 126-165 (525)
270 PF11180 DUF2968: Protein of u 71.9 38 0.00082 32.5 9.8 29 287-315 152-180 (192)
271 PRK02224 chromosome segregatio 71.9 40 0.00087 37.5 11.6 14 253-266 625-638 (880)
272 KOG1318 Helix loop helix trans 71.8 11 0.00024 39.7 6.8 52 265-316 287-351 (411)
273 PF05911 DUF869: Plant protein 71.6 37 0.00081 38.5 11.2 24 292-315 137-160 (769)
274 cd07596 BAR_SNX The Bin/Amphip 71.3 62 0.0014 28.9 10.8 58 258-315 107-171 (218)
275 PF13935 Ead_Ea22: Ead/Ea22-li 71.3 35 0.00075 30.4 9.0 48 268-315 90-138 (139)
276 PRK14872 rod shape-determining 71.1 18 0.00039 37.2 8.0 38 276-313 58-98 (337)
277 KOG4001 Axonemal dynein light 71.0 38 0.00083 33.2 9.7 42 257-298 170-215 (259)
278 PRK11546 zraP zinc resistance 70.6 14 0.00031 33.8 6.4 23 295-317 88-110 (143)
279 PF13805 Pil1: Eisosome compon 70.4 13 0.00029 37.2 6.7 65 247-316 127-192 (271)
280 COG4372 Uncharacterized protei 70.2 46 0.00099 35.5 10.7 28 286-313 148-175 (499)
281 PRK14139 heat shock protein Gr 70.2 20 0.00044 33.9 7.6 12 367-378 140-151 (185)
282 PRK03992 proteasome-activating 70.1 14 0.0003 37.7 7.1 41 270-310 10-50 (389)
283 PF12808 Mto2_bdg: Micro-tubul 70.0 14 0.0003 28.5 5.3 26 271-296 25-50 (52)
284 PRK14140 heat shock protein Gr 69.7 20 0.00044 34.0 7.5 14 367-380 147-160 (191)
285 PF04899 MbeD_MobD: MbeD/MobD 69.6 22 0.00047 28.9 6.6 30 272-301 32-61 (70)
286 PF09738 DUF2051: Double stran 69.5 20 0.00043 36.3 7.8 49 268-316 112-160 (302)
287 KOG0288 WD40 repeat protein Ti 69.5 29 0.00063 36.9 9.2 44 251-294 26-74 (459)
288 PF02403 Seryl_tRNA_N: Seryl-t 69.4 24 0.00052 29.4 7.2 49 266-314 41-99 (108)
289 PF10779 XhlA: Haemolysin XhlA 69.4 24 0.00053 27.9 6.8 30 273-302 18-47 (71)
290 PF05557 MAD: Mitotic checkpoi 69.4 20 0.00043 39.6 8.5 23 296-318 566-588 (722)
291 PF05812 Herpes_BLRF2: Herpesv 69.3 8.2 0.00018 34.4 4.5 30 266-295 1-30 (118)
292 PF09789 DUF2353: Uncharacteri 69.3 35 0.00076 35.0 9.5 32 285-316 68-99 (319)
293 PF04201 TPD52: Tumour protein 68.9 15 0.00033 34.2 6.4 6 370-375 149-154 (162)
294 PF11544 Spc42p: Spindle pole 68.9 40 0.00086 28.0 8.1 35 276-310 20-54 (76)
295 PF06810 Phage_GP20: Phage min 68.8 19 0.0004 32.9 6.8 52 267-318 26-84 (155)
296 PF05812 Herpes_BLRF2: Herpesv 68.7 7.5 0.00016 34.6 4.1 25 291-315 5-29 (118)
297 KOG0999 Microtubule-associated 68.6 42 0.00091 37.2 10.4 40 273-312 168-210 (772)
298 PHA03161 hypothetical protein; 68.5 28 0.0006 32.3 7.8 59 256-316 44-102 (150)
299 PF08232 Striatin: Striatin fa 68.4 35 0.00077 30.4 8.4 49 270-318 13-61 (134)
300 PF13870 DUF4201: Domain of un 68.4 88 0.0019 28.4 11.2 41 275-315 91-131 (177)
301 PF04999 FtsL: Cell division p 68.2 20 0.00044 29.4 6.4 34 282-315 35-68 (97)
302 PF04012 PspA_IM30: PspA/IM30 68.1 44 0.00096 31.1 9.4 47 269-315 99-145 (221)
303 PF08606 Prp19: Prp19/Pso4-lik 68.1 32 0.00069 28.2 7.3 31 270-300 10-40 (70)
304 TIGR01554 major_cap_HK97 phage 68.0 30 0.00065 34.9 8.8 17 272-288 38-54 (378)
305 PF04880 NUDE_C: NUDE protein, 67.7 4.5 9.7E-05 37.7 2.7 27 286-313 28-54 (166)
306 TIGR03185 DNA_S_dndD DNA sulfu 67.7 58 0.0013 35.5 11.5 45 269-313 422-466 (650)
307 PF10018 Med4: Vitamin-D-recep 67.6 65 0.0014 29.9 10.3 13 329-341 76-88 (188)
308 PF07047 OPA3: Optic atrophy 3 67.1 11 0.00025 33.3 5.0 36 246-287 96-131 (134)
309 PF09766 FimP: Fms-interacting 67.0 31 0.00067 35.3 8.8 53 261-313 101-153 (355)
310 PF10168 Nup88: Nuclear pore c 67.0 29 0.00063 38.9 9.2 33 270-302 581-613 (717)
311 KOG0288 WD40 repeat protein Ti 66.8 52 0.0011 35.1 10.4 13 368-380 141-153 (459)
312 PF04949 Transcrip_act: Transc 66.8 74 0.0016 29.7 10.2 57 242-298 39-100 (159)
313 KOG0249 LAR-interacting protei 66.8 50 0.0011 37.6 10.7 41 276-316 217-257 (916)
314 PF07047 OPA3: Optic atrophy 3 66.6 13 0.00028 33.0 5.3 37 260-296 97-133 (134)
315 PF04849 HAP1_N: HAP1 N-termin 66.6 52 0.0011 33.6 10.1 32 283-314 235-266 (306)
316 PF05278 PEARLI-4: Arabidopsis 66.6 96 0.0021 31.2 11.7 28 288-315 213-240 (269)
317 KOG2891 Surface glycoprotein [ 66.5 65 0.0014 33.2 10.6 17 260-276 354-370 (445)
318 PF12329 TMF_DNA_bd: TATA elem 66.5 26 0.00057 28.3 6.6 40 274-313 32-71 (74)
319 PRK14151 heat shock protein Gr 66.5 23 0.00051 33.1 7.1 14 367-380 131-144 (176)
320 KOG0250 DNA repair protein RAD 66.4 58 0.0013 38.3 11.5 52 265-316 369-421 (1074)
321 PF06698 DUF1192: Protein of u 66.4 20 0.00043 28.4 5.6 25 270-294 23-47 (59)
322 PF05667 DUF812: Protein of un 66.4 21 0.00046 39.1 7.9 50 266-315 326-375 (594)
323 PF02994 Transposase_22: L1 tr 66.3 18 0.0004 37.1 7.0 46 271-316 140-185 (370)
324 PF07798 DUF1640: Protein of u 66.3 22 0.00048 32.6 6.9 13 279-291 55-67 (177)
325 PF07889 DUF1664: Protein of u 66.1 62 0.0013 29.0 9.4 48 268-315 68-115 (126)
326 PHA03162 hypothetical protein; 66.0 4.4 9.4E-05 36.8 2.2 28 265-292 10-37 (135)
327 KOG4797 Transcriptional regula 66.0 12 0.00027 33.1 4.9 29 268-296 67-95 (123)
328 KOG0249 LAR-interacting protei 65.9 54 0.0012 37.3 10.7 30 286-315 220-249 (916)
329 PRK10361 DNA recombination pro 65.7 80 0.0017 34.1 11.8 30 269-298 61-90 (475)
330 PRK04863 mukB cell division pr 65.6 60 0.0013 39.5 11.9 13 251-263 325-337 (1486)
331 PF15556 Zwint: ZW10 interacto 65.6 89 0.0019 30.7 11.0 64 253-316 112-175 (252)
332 PF07407 Seadorna_VP6: Seadorn 65.5 20 0.00043 37.3 6.9 31 269-299 33-63 (420)
333 PF03194 LUC7: LUC7 N_terminus 65.5 41 0.0009 33.0 9.0 16 330-346 191-206 (254)
334 PRK13922 rod shape-determining 65.5 23 0.0005 34.2 7.2 22 271-292 72-93 (276)
335 PF15030 DUF4527: Protein of u 65.3 47 0.001 33.3 9.2 50 251-300 41-90 (277)
336 PRK14163 heat shock protein Gr 65.2 24 0.00053 34.2 7.2 11 367-377 143-153 (214)
337 PF05622 HOOK: HOOK protein; 65.2 2.1 4.5E-05 47.1 0.0 76 240-315 296-375 (713)
338 PRK10698 phage shock protein P 65.2 89 0.0019 30.0 11.0 49 268-316 99-147 (222)
339 PRK14141 heat shock protein Gr 65.2 22 0.00048 34.3 6.9 13 367-379 147-159 (209)
340 PRK14147 heat shock protein Gr 65.1 24 0.00053 32.8 7.0 13 367-379 126-138 (172)
341 PF01920 Prefoldin_2: Prefoldi 65.1 21 0.00045 29.0 5.9 34 280-313 67-100 (106)
342 PHA03162 hypothetical protein; 65.0 8.7 0.00019 34.9 3.8 25 291-315 15-39 (135)
343 PF15035 Rootletin: Ciliary ro 64.9 34 0.00074 32.1 7.9 48 266-313 72-119 (182)
344 PF12999 PRKCSH-like: Glucosid 64.9 39 0.00084 31.9 8.3 32 264-295 142-173 (176)
345 PRK05431 seryl-tRNA synthetase 64.7 48 0.001 34.7 9.8 19 294-312 78-96 (425)
346 PHA03155 hypothetical protein; 64.6 8.5 0.00019 34.1 3.7 25 269-293 9-33 (115)
347 PHA03155 hypothetical protein; 64.4 8.7 0.00019 34.1 3.7 24 291-314 10-33 (115)
348 COG1842 PspA Phage shock prote 64.4 1.1E+02 0.0024 29.7 11.6 46 270-315 94-139 (225)
349 PF12711 Kinesin-relat_1: Kine 64.2 78 0.0017 26.8 9.1 38 277-316 46-83 (86)
350 PF04420 CHD5: CHD5-like prote 64.2 24 0.00053 32.1 6.7 21 293-313 70-90 (161)
351 PF10205 KLRAQ: Predicted coil 64.2 49 0.0011 28.9 8.1 30 269-298 41-70 (102)
352 PF03245 Phage_lysis: Bacterio 64.2 69 0.0015 28.2 9.3 52 264-315 10-61 (125)
353 KOG0971 Microtubule-associated 64.1 54 0.0012 38.3 10.5 32 284-315 327-358 (1243)
354 PF03980 Nnf1: Nnf1 ; InterPr 64.0 60 0.0013 27.3 8.6 32 285-316 76-107 (109)
355 PF04340 DUF484: Protein of un 63.7 23 0.00049 33.4 6.6 24 272-295 44-67 (225)
356 PF10482 CtIP_N: Tumour-suppre 63.7 41 0.00089 30.1 7.7 52 264-315 10-61 (120)
357 PF01486 K-box: K-box region; 63.6 37 0.0008 28.2 7.2 34 258-291 61-98 (100)
358 PF11544 Spc42p: Spindle pole 63.4 62 0.0013 26.9 8.2 48 270-317 7-54 (76)
359 PF06210 DUF1003: Protein of u 63.4 39 0.00084 29.4 7.4 22 283-304 81-102 (108)
360 PF09403 FadA: Adhesion protei 63.4 1.1E+02 0.0024 27.4 11.4 64 249-314 35-107 (126)
361 KOG0161 Myosin class II heavy 63.1 56 0.0012 40.7 11.1 64 252-315 1644-1707(1930)
362 PHA02109 hypothetical protein 63.1 21 0.00045 34.3 6.1 32 267-298 192-223 (233)
363 COG1340 Uncharacterized archae 63.0 1.1E+02 0.0024 31.1 11.6 7 242-248 9-15 (294)
364 KOG2185 Predicted RNA-processi 63.0 29 0.00064 36.9 7.7 63 254-316 399-471 (486)
365 PF10506 MCC-bdg_PDZ: PDZ doma 62.9 29 0.00062 28.0 6.1 34 272-305 2-35 (67)
366 KOG0239 Kinesin (KAR3 subfamil 62.8 48 0.001 37.1 9.8 43 270-312 243-285 (670)
367 COG3352 FlaC Putative archaeal 62.7 35 0.00077 31.8 7.4 49 267-315 78-127 (157)
368 PF07200 Mod_r: Modifier of ru 62.5 86 0.0019 27.5 9.7 50 251-301 39-88 (150)
369 COG2919 Septum formation initi 62.5 1E+02 0.0023 26.7 11.3 30 287-316 55-84 (117)
370 PF10168 Nup88: Nuclear pore c 62.4 90 0.002 35.2 11.9 46 270-315 560-605 (717)
371 PF13805 Pil1: Eisosome compon 62.3 46 0.001 33.4 8.7 30 269-298 166-195 (271)
372 PRK09413 IS2 repressor TnpA; R 62.2 18 0.0004 31.0 5.3 30 286-315 75-104 (121)
373 KOG3650 Predicted coiled-coil 62.1 17 0.00037 31.9 5.0 41 264-304 66-106 (120)
374 TIGR01730 RND_mfp RND family e 62.0 42 0.00092 31.8 8.2 33 283-315 103-135 (322)
375 PRK06569 F0F1 ATP synthase sub 62.0 1.3E+02 0.0027 28.0 10.9 65 247-314 41-106 (155)
376 TIGR03689 pup_AAA proteasome A 61.8 16 0.00035 39.3 5.9 38 271-315 4-41 (512)
377 PRK14153 heat shock protein Gr 61.7 27 0.00059 33.3 6.8 12 367-378 143-154 (194)
378 PRK03947 prefoldin subunit alp 61.7 40 0.00087 29.4 7.4 35 273-307 99-133 (140)
379 cd00632 Prefoldin_beta Prefold 61.6 37 0.00081 28.4 6.9 38 279-316 67-104 (105)
380 PF05600 DUF773: Protein of un 61.5 37 0.00079 36.6 8.4 43 271-313 449-491 (507)
381 PF05384 DegS: Sensor protein 61.4 96 0.0021 28.8 10.1 35 256-290 22-56 (159)
382 COG4372 Uncharacterized protei 61.4 67 0.0014 34.3 9.9 52 258-309 127-178 (499)
383 PF07889 DUF1664: Protein of u 61.3 1.1E+02 0.0023 27.5 10.0 64 246-315 59-122 (126)
384 PF15136 UPF0449: Uncharacteri 61.2 42 0.00092 29.0 7.2 40 275-314 57-96 (97)
385 PF05837 CENP-H: Centromere pr 61.2 28 0.00061 29.7 6.2 43 273-315 1-43 (106)
386 PF07200 Mod_r: Modifier of ru 61.2 46 0.00099 29.2 7.7 49 256-304 36-84 (150)
387 KOG4661 Hsp27-ERE-TATA-binding 61.1 68 0.0015 35.8 10.3 14 96-109 445-458 (940)
388 PF14775 NYD-SP28_assoc: Sperm 61.0 65 0.0014 25.2 7.6 36 278-314 23-58 (60)
389 PRK09343 prefoldin subunit bet 60.9 45 0.00097 29.1 7.5 31 285-315 74-104 (121)
390 PF05911 DUF869: Plant protein 60.9 39 0.00084 38.4 8.8 37 261-297 127-163 (769)
391 COG2919 Septum formation initi 60.8 1E+02 0.0022 26.8 9.6 62 243-304 17-86 (117)
392 TIGR00606 rad50 rad50. This fa 60.8 56 0.0012 38.7 10.4 45 269-313 882-926 (1311)
393 PF14282 FlxA: FlxA-like prote 60.8 40 0.00087 28.8 7.0 55 268-322 19-77 (106)
394 PF09728 Taxilin: Myosin-like 60.8 1E+02 0.0022 31.1 11.0 69 247-315 50-147 (309)
395 KOG0993 Rab5 GTPase effector R 60.6 38 0.00082 36.3 8.0 50 267-316 133-182 (542)
396 PF10458 Val_tRNA-synt_C: Valy 60.5 62 0.0013 25.2 7.5 21 295-315 45-65 (66)
397 PRK14144 heat shock protein Gr 60.4 36 0.00079 32.6 7.4 13 367-379 154-166 (199)
398 PRK09973 putative outer membra 60.3 52 0.0011 27.8 7.4 46 269-314 25-70 (85)
399 KOG3433 Protein involved in me 60.2 92 0.002 30.1 9.9 37 260-296 108-144 (203)
400 PF06216 RTBV_P46: Rice tungro 59.9 24 0.00051 35.7 6.2 48 253-303 66-113 (389)
401 PF06216 RTBV_P46: Rice tungro 59.8 50 0.0011 33.5 8.4 52 268-319 64-115 (389)
402 PF12999 PRKCSH-like: Glucosid 59.7 76 0.0017 30.0 9.2 15 300-314 157-171 (176)
403 PF03961 DUF342: Protein of un 59.5 60 0.0013 33.8 9.4 28 287-314 380-407 (451)
404 PF15397 DUF4618: Domain of un 59.5 90 0.002 31.2 10.1 40 257-296 70-109 (258)
405 KOG0837 Transcriptional activa 59.4 48 0.001 33.4 8.2 37 277-313 229-265 (279)
406 PRK10963 hypothetical protein; 59.2 28 0.00061 33.1 6.4 28 271-298 54-84 (223)
407 PF07334 IFP_35_N: Interferon- 59.2 19 0.0004 29.9 4.5 18 278-295 3-20 (76)
408 cd07429 Cby_like Chibby, a nuc 59.0 21 0.00045 31.4 5.0 21 277-297 81-101 (108)
409 PF06428 Sec2p: GDP/GTP exchan 58.9 60 0.0013 28.0 7.7 25 292-316 40-64 (100)
410 KOG4603 TBP-1 interacting prot 58.8 48 0.001 31.7 7.7 53 267-319 92-146 (201)
411 PF08912 Rho_Binding: Rho Bind 58.7 40 0.00086 27.6 6.2 33 273-305 1-33 (69)
412 KOG4010 Coiled-coil protein TP 58.6 30 0.00065 33.3 6.4 32 272-303 48-79 (208)
413 PLN02678 seryl-tRNA synthetase 58.5 57 0.0012 34.7 9.1 23 291-313 80-102 (448)
414 PRK01156 chromosome segregatio 58.5 88 0.0019 35.1 11.1 6 338-343 768-773 (895)
415 KOG0243 Kinesin-like protein [ 58.5 95 0.0021 36.6 11.4 19 267-285 447-465 (1041)
416 PF10174 Cast: RIM-binding pro 58.4 37 0.0008 38.6 8.1 52 265-316 298-349 (775)
417 PRK14145 heat shock protein Gr 58.3 53 0.0012 31.4 8.1 12 367-378 152-163 (196)
418 KOG0483 Transcription factor H 58.2 14 0.00031 35.2 4.3 31 285-315 115-145 (198)
419 PF12777 MT: Microtubule-bindi 58.2 28 0.0006 35.1 6.5 57 260-316 220-276 (344)
420 KOG4360 Uncharacterized coiled 58.1 37 0.00079 37.2 7.6 46 269-314 220-265 (596)
421 cd07666 BAR_SNX7 The Bin/Amphi 58.1 44 0.00096 32.8 7.7 56 259-317 154-209 (243)
422 PF06637 PV-1: PV-1 protein (P 57.9 1.3E+02 0.0029 31.9 11.4 22 327-348 409-430 (442)
423 PF10779 XhlA: Haemolysin XhlA 57.8 75 0.0016 25.1 7.7 44 272-315 3-46 (71)
424 PF15290 Syntaphilin: Golgi-lo 57.7 52 0.0011 33.5 8.2 15 330-344 155-169 (305)
425 TIGR01242 26Sp45 26S proteasom 57.6 23 0.00051 35.4 5.9 31 286-316 10-40 (364)
426 KOG2751 Beclin-like protein [S 57.6 1.2E+02 0.0026 32.6 11.1 66 251-316 147-217 (447)
427 COG1340 Uncharacterized archae 57.5 1.6E+02 0.0034 30.2 11.5 65 251-315 30-95 (294)
428 PF15369 KIAA1328: Uncharacter 57.5 1E+02 0.0022 31.9 10.3 50 251-300 8-65 (328)
429 cd00632 Prefoldin_beta Prefold 57.4 55 0.0012 27.4 7.3 34 271-304 66-99 (105)
430 PF09727 CortBP2: Cortactin-bi 57.4 99 0.0021 29.7 9.6 38 277-314 136-173 (192)
431 KOG2077 JNK/SAPK-associated pr 57.4 30 0.00066 38.4 6.9 48 268-315 329-376 (832)
432 PF10146 zf-C4H2: Zinc finger- 57.3 37 0.0008 33.1 7.0 45 269-313 61-106 (230)
433 PF03670 UPF0184: Uncharacteri 57.3 42 0.00091 28.3 6.3 40 268-307 33-72 (83)
434 KOG4674 Uncharacterized conser 57.3 88 0.0019 38.9 11.3 73 243-315 811-884 (1822)
435 PF11365 DUF3166: Protein of u 57.0 50 0.0011 28.5 6.9 45 271-315 4-48 (96)
436 PRK06835 DNA replication prote 56.9 96 0.0021 31.4 10.1 21 295-315 64-84 (329)
437 TIGR02338 gimC_beta prefoldin, 56.7 54 0.0012 27.8 7.1 28 287-314 72-99 (110)
438 TIGR01628 PABP-1234 polyadenyl 56.7 32 0.00069 36.3 6.9 21 46-66 398-418 (562)
439 PF09730 BicD: Microtubule-ass 56.6 65 0.0014 36.4 9.6 47 270-316 71-117 (717)
440 KOG0239 Kinesin (KAR3 subfamil 56.6 1.2E+02 0.0025 34.1 11.4 13 303-315 300-312 (670)
441 COG3879 Uncharacterized protei 56.6 49 0.0011 32.9 7.7 25 271-295 60-84 (247)
442 KOG4593 Mitotic checkpoint pro 56.6 79 0.0017 35.7 10.0 69 253-321 483-584 (716)
443 PF14915 CCDC144C: CCDC144C pr 56.4 1.3E+02 0.0029 30.8 10.8 44 272-315 60-103 (305)
444 PRK05771 V-type ATP synthase s 56.2 74 0.0016 34.7 9.8 39 278-316 89-127 (646)
445 PF04012 PspA_IM30: PspA/IM30 56.2 1.5E+02 0.0032 27.7 10.6 44 272-315 95-138 (221)
446 KOG0982 Centrosomal protein Nu 56.2 85 0.0018 33.8 9.8 53 261-315 278-330 (502)
447 PF00261 Tropomyosin: Tropomyo 56.1 79 0.0017 30.2 8.9 45 271-315 116-160 (237)
448 PF01025 GrpE: GrpE; InterPro 55.7 11 0.00024 33.4 2.9 15 367-381 121-135 (165)
449 TIGR00414 serS seryl-tRNA synt 55.4 69 0.0015 33.4 9.0 82 257-338 33-120 (418)
450 KOG0995 Centromere-associated 55.4 59 0.0013 35.9 8.7 66 250-315 275-351 (581)
451 PF14073 Cep57_CLD: Centrosome 55.4 1.9E+02 0.0042 27.5 11.4 31 243-273 77-107 (178)
452 PRK14157 heat shock protein Gr 55.2 46 0.001 32.6 7.2 12 367-378 180-191 (227)
453 PRK14160 heat shock protein Gr 55.0 34 0.00073 33.1 6.2 31 270-300 63-93 (211)
454 KOG0996 Structural maintenance 54.9 1E+02 0.0023 36.8 11.0 51 264-314 538-588 (1293)
455 PF00769 ERM: Ezrin/radixin/mo 54.9 1.2E+02 0.0027 29.4 10.2 37 280-316 80-116 (246)
456 PF05622 HOOK: HOOK protein; 54.9 4 8.8E-05 44.9 0.0 29 287-315 396-424 (713)
457 COG3879 Uncharacterized protei 54.8 58 0.0013 32.4 7.9 9 305-313 98-106 (247)
458 PF13863 DUF4200: Domain of un 54.8 1.3E+02 0.0028 25.4 12.4 18 298-315 83-100 (126)
459 KOG0978 E3 ubiquitin ligase in 54.5 82 0.0018 35.6 9.8 63 257-319 562-624 (698)
460 PF02388 FemAB: FemAB family; 54.5 58 0.0013 33.6 8.3 48 268-315 242-292 (406)
461 PF03961 DUF342: Protein of un 54.4 61 0.0013 33.8 8.5 50 267-316 347-402 (451)
462 TIGR01069 mutS2 MutS2 family p 54.3 1.4E+02 0.0031 33.8 11.8 8 273-280 548-555 (771)
463 PRK10636 putative ABC transpor 54.2 63 0.0014 35.2 8.9 25 268-292 563-587 (638)
464 PF05483 SCP-1: Synaptonemal c 54.1 68 0.0015 36.3 9.0 73 272-344 605-678 (786)
465 PRK11239 hypothetical protein; 54.0 21 0.00045 34.8 4.6 26 271-296 186-211 (215)
466 KOG4643 Uncharacterized coiled 53.8 1E+02 0.0022 36.5 10.4 67 249-315 375-441 (1195)
467 PLN02320 seryl-tRNA synthetase 53.7 33 0.00071 37.1 6.5 53 251-303 113-165 (502)
468 PRK13455 F0F1 ATP synthase sub 53.4 1.4E+02 0.0031 27.3 9.8 45 246-290 57-101 (184)
469 PRK14127 cell division protein 53.4 58 0.0013 28.5 6.9 32 282-313 37-68 (109)
470 COG2900 SlyX Uncharacterized p 53.3 82 0.0018 26.0 7.2 45 271-315 4-48 (72)
471 PF12128 DUF3584: Protein of u 53.2 1.2E+02 0.0026 35.8 11.4 14 331-344 556-569 (1201)
472 KOG3647 Predicted coiled-coil 53.1 1.2E+02 0.0027 31.0 9.9 107 264-372 143-256 (338)
473 PF15456 Uds1: Up-regulated Du 53.1 1.7E+02 0.0036 26.1 10.9 73 240-312 21-111 (124)
474 TIGR03689 pup_AAA proteasome A 53.0 27 0.00058 37.7 5.7 42 275-316 1-42 (512)
475 KOG2893 Zn finger protein [Gen 53.0 50 0.0011 33.2 7.1 65 41-108 130-204 (341)
476 PF11853 DUF3373: Protein of u 53.0 13 0.00028 40.0 3.3 39 259-297 22-60 (489)
477 PF07767 Nop53: Nop53 (60S rib 52.9 1.2E+02 0.0026 31.1 10.2 89 247-337 276-364 (387)
478 PRK14146 heat shock protein Gr 52.9 58 0.0013 31.5 7.5 61 270-345 56-116 (215)
479 PRK05431 seryl-tRNA synthetase 52.9 76 0.0016 33.2 8.9 69 247-315 35-106 (425)
480 KOG0483 Transcription factor H 52.8 23 0.00051 33.9 4.7 40 276-315 106-145 (198)
481 PF15186 TEX13: Testis-express 52.8 1.4E+02 0.0031 27.8 9.5 58 259-316 76-137 (152)
482 KOG0946 ER-Golgi vesicle-tethe 52.8 51 0.0011 37.9 7.9 90 267-371 649-743 (970)
483 PF10481 CENP-F_N: Cenp-F N-te 52.8 1E+02 0.0023 31.4 9.3 70 244-313 15-91 (307)
484 PF06785 UPF0242: Uncharacteri 52.7 70 0.0015 33.5 8.3 57 260-316 60-119 (401)
485 cd00890 Prefoldin Prefoldin is 52.7 67 0.0015 26.9 7.1 43 266-308 85-127 (129)
486 PF02646 RmuC: RmuC family; I 52.6 48 0.001 33.0 7.1 59 267-325 12-78 (304)
487 PF09798 LCD1: DNA damage chec 52.4 52 0.0011 36.8 7.9 49 264-315 11-59 (654)
488 KOG0612 Rho-associated, coiled 52.4 1.3E+02 0.0028 36.2 11.2 72 244-315 468-541 (1317)
489 PF10498 IFT57: Intra-flagella 52.1 1.4E+02 0.0029 31.1 10.4 65 243-307 255-319 (359)
490 KOG3684 Ca2+-activated K+ chan 51.9 1.5E+02 0.0033 32.2 10.8 75 242-316 387-461 (489)
491 KOG0612 Rho-associated, coiled 51.8 1.2E+02 0.0026 36.5 10.8 77 240-316 470-549 (1317)
492 PF12128 DUF3584: Protein of u 51.8 1.1E+02 0.0024 36.0 10.9 86 232-323 591-676 (1201)
493 KOG3091 Nuclear pore complex, 51.6 92 0.002 33.9 9.3 124 243-375 337-476 (508)
494 PF02996 Prefoldin: Prefoldin 51.6 58 0.0013 27.2 6.5 45 267-311 76-120 (120)
495 PF13600 DUF4140: N-terminal d 51.5 41 0.00088 27.8 5.5 35 282-316 70-104 (104)
496 PF12072 DUF3552: Domain of un 51.4 1.9E+02 0.0041 27.1 10.5 85 237-323 60-151 (201)
497 PF14645 Chibby: Chibby family 51.4 33 0.00072 30.1 5.1 41 280-320 69-109 (116)
498 PRK14158 heat shock protein Gr 51.3 45 0.00098 31.8 6.4 43 272-314 37-79 (194)
499 PF10234 Cluap1: Clusterin-ass 51.2 75 0.0016 31.8 8.1 50 267-316 168-217 (267)
500 PF04999 FtsL: Cell division p 51.0 52 0.0011 26.9 6.0 37 273-309 33-69 (97)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8.8e-72 Score=511.45 Aligned_cols=179 Identities=61% Similarity=1.051 Sum_probs=168.3
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC--C
Q 016610 1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y 78 (386)
Q Consensus 1 MG~~e~~~~~k~~K~ss~~~~~~~~~~~ypDWs~mQAYygp~~~~pp~f~s~vas~~~phPYmWG~~qpmmppyGtP--Y 78 (386)
||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||+++||++|+|||||||+||||||||||| |
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY 79 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY 79 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence 999999999999999887655899999999999999999999 8899999999999999999999999999999997 9
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCCC--CCCCCCcCC-CCCCCCCcccchhhhhcccC-CcccccCCCCCCCCCC
Q 016610 79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG 154 (386)
Q Consensus 79 ~a~Yp~GgvYaHP~~p~g~~p~~~~~~~sp~--~~tp~s~e~-~~k~~~~~~~~~~Kk~Kg~~-g~~m~~g~~~~~~~~~ 154 (386)
+||||||||||||+||+|+|||++++++++. ++||+++|+ ++|++++|||+++||||||| ||+|++|||+.+++++
T Consensus 80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~ 159 (189)
T PF07777_consen 80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG 159 (189)
T ss_pred ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence 9999999999999999999999999999854 478999999 69999999999999999999 6999999999999998
Q ss_pred C-CCCCCCCc-C--CCCCCCCCCCCCcccc
Q 016610 155 G-AEQRPSQS-E--ADGSTDGSDGNTVRAG 180 (386)
Q Consensus 155 ~-~~~~~sqS-~--segssdgsd~n~~~~~ 180 (386)
+ +|++.||| | +||||||||+|+++++
T Consensus 160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS 189 (189)
T ss_pred CCCCCccCccccccccccccCcCccccCCC
Confidence 5 58899997 3 7999999999999874
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.48 E-value=2.3e-13 Score=104.89 Aligned_cols=64 Identities=52% Similarity=0.702 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
|++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677899999999999999999999999999999999999999999999999999999998873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.42 E-value=9.7e-13 Score=101.51 Aligned_cols=61 Identities=56% Similarity=0.732 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305 (386)
Q Consensus 245 ElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN 305 (386)
+.|+.||+++||+||++||.||++|+.+|+.+|..|+.+|..|+.++..|..++..|..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999888777776665
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.28 E-value=6.6e-12 Score=122.89 Aligned_cols=67 Identities=33% Similarity=0.334 Sum_probs=60.8
Q ss_pred CCCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 234 LPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 234 ~~~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
+.+...+.||.-+||+-|+++|||+||.||+|||+|+.+||.||.+|+.+|..|-+||..|++.+..
T Consensus 278 ltsp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 278 LTSPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred ccCCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 4345567799999999999999999999999999999999999999999999999999999886643
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.22 E-value=3e-11 Score=125.72 Aligned_cols=70 Identities=34% Similarity=0.415 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 241 qdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
-|.+-+||+.||++|||||..||+|||+|++.||.++..|.+||..|+.|...|++++..|..||..|+-
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 3788999999999999999999999999999999999999999999999999999999999999998864
No 6
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.15 E-value=2e-10 Score=110.18 Aligned_cols=71 Identities=35% Similarity=0.420 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 245 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 245 ElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|+|-+|||++||.+|+-+|.|||+++++|+.++.+|+.||..|+.|...|++..+.|..+|..|..+|..+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999998888854
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.14 E-value=6.2e-11 Score=121.77 Aligned_cols=81 Identities=30% Similarity=0.399 Sum_probs=65.3
Q ss_pred CCCCcccc--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 234 LPPETWIQ--NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 234 ~~~e~~lq--dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
+|....++ +|+.+||.|||++|++||+.||+|||+|++.||.||....+||++|++++.+|..++..|.++.+.|...
T Consensus 236 lPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 236 LPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34444443 8999999999999999999999999999999999999999999999999988766555555554444444
Q ss_pred HHH
Q 016610 312 LKS 314 (386)
Q Consensus 312 L~~ 314 (386)
+.+
T Consensus 316 v~q 318 (472)
T KOG0709|consen 316 VIQ 318 (472)
T ss_pred Hhh
Confidence 443
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.11 E-value=4.5e-10 Score=84.40 Aligned_cols=51 Identities=53% Similarity=0.730 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
.++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..+|..|+.+
T Consensus 4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566777 99999999999999999999999999999999999999988653
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.58 E-value=2.2e-07 Score=90.37 Aligned_cols=65 Identities=31% Similarity=0.418 Sum_probs=57.6
Q ss_pred CCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 236 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 236 ~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
....++++..+|-+|.+++|||+|++||.||.+++.+||.+|..|..+|..|..++..|++.+.+
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999998888665433
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.38 E-value=4.4e-09 Score=86.86 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 241 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 241 qdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
.+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..+..++..+...+..|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999999999999999999999999999988888888887777776665555544444
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.00 E-value=2.3e-05 Score=76.31 Aligned_cols=52 Identities=31% Similarity=0.593 Sum_probs=45.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
|+.+|-++|||||.+.+...+++..||..|++||..|+.+|.+|+.++..|+
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446999999999999999999999999999999999999998876544443
No 12
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.89 E-value=7.3e-05 Score=73.98 Aligned_cols=53 Identities=32% Similarity=0.494 Sum_probs=44.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
|.++.|..+|-|-|+||+++.+.|+.+++.|+.+|.+|+.++..|.++++.|+
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677899999999999999999999999999999998888766555544
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.68 E-value=0.00034 Score=62.36 Aligned_cols=70 Identities=30% Similarity=0.450 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
+--.+|..||-++||=-|+-||-|+-..-++||. +|..|..+|..|++++..+..|...|+.+...|+-.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~-------~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEK-------EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456889999999999999999999876666554 555566666666666666777777888888777533
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.19 E-value=0.00068 Score=72.81 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=49.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
|-.||+=+||.||++||.||-.-|..||..|+.|+.|-..|.+|-..+...+..+..+...|-
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY 552 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999999999999999988888887776666555544444444443
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.74 E-value=0.02 Score=54.32 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 243 ErElKR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|+++...+-++.| +..........++.+++++..+..|+++|..|++++..++.+++.|+.||..|+..+..
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444 22222333334555666777777778888888888877777777777777777776654
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.57 E-value=0.011 Score=50.91 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
..+.+|++++..|-.+...|+..+..|.+++..|+.||..||++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999998754
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.26 E-value=0.021 Score=49.62 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..+..|++++..|..+...|+..+..|.+++..|+.||..||++|..+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999986
No 18
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.21 E-value=0.029 Score=46.35 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-++|..++..|+.....|..++...+++|.+|+.||..|..-|.+|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999998
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.19 E-value=0.035 Score=44.89 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.++.||.+|..+-..+..|+.++..|+++...|..+|..|+++...++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777776666666666666666554
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.42 E-value=0.063 Score=49.63 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELS---RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE---~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++-++.+..|+..+|....-+=.-=-..|..|. .....|..||..|+.++..|++++..|+.||..|..++..++
T Consensus 59 Y~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 59 YEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666655322111111112233333 346677788888888888888888888888888888777664
No 21
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.39 E-value=0.074 Score=56.29 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|...++||++++.|++|...|.++...+++++++|+.||+.|+++++.+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999999999999999999999999999999653
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.34 E-value=0.26 Score=46.92 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 322 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~E 322 (386)
..+..-+++..+|+++++.+..+...|..++.+|++++..+..|+..|++++..++.....+
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 111 NIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456777888888888888888888888888888888888888888888776544333
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.071 Score=43.57 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-+.-|+-+|++|+.+|..|..++..++...+.|+.||.+|+++-..-|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999999999998766543
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.10 E-value=0.11 Score=41.54 Aligned_cols=45 Identities=33% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+..|+.+|+.|-..-..|+.++..|+++...+..|+..|.++...
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.08 E-value=0.15 Score=40.70 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.++.|-..++.|+.||..|+.++..+..+-..|...|..=+.+|..+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999988875
No 26
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.86 E-value=0.14 Score=40.58 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++++||.++..++.-...|...+....+++..|+.+...|.++|..++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999876
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.80 E-value=0.21 Score=40.37 Aligned_cols=45 Identities=36% Similarity=0.475 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.-|+.+++.|+.+|..|..+...|++++.+|+.|-.....+|..
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 28
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.66 E-value=0.19 Score=49.20 Aligned_cols=55 Identities=27% Similarity=0.368 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+-++--++.++++..+.+.|..+|..|..+++.+++++..|+-||+.|.+.+..+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445667777788888888888888888888889999999999998888865
No 29
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.62 E-value=0.6 Score=43.22 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=51.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+.....+..-+.-......++.++..-++.|..|...|.-++..+.+++.+|+.||..|-+++...
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555556667777888888888888888888888888889999999999998888764
No 30
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.47 E-value=0.13 Score=45.01 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..+.+|++++.+|-++...|++.+..|-++...|+.||.-||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45678889999999999999999999999999999999999998887
No 31
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=94.35 E-value=0.85 Score=38.11 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-|.-++|..+++.+=|++=..|.-+.....+|+.++..|..+...|-.++.....++.+|+.-|..+..+|..+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999898888888888888999999999999999999999999999999999999999999865
No 32
>PRK00295 hypothetical protein; Provisional
Probab=94.13 E-value=0.37 Score=38.40 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++++||.++..++.-...|-..|.+..+++..|+.+.+.|..+|+.++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999999875
No 33
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.12 E-value=0.34 Score=38.97 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
.+++.+||.++..++.-...|-+.|.+.++++..|..+.+.|..+|..++.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357899999999999999999999999999999999999999999988753
No 34
>PRK02119 hypothetical protein; Provisional
Probab=94.06 E-value=0.34 Score=39.15 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++.+||.++..++.-...|-..|.+.++++..|+.+.+.|.++|+.++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999999999999999999998865
No 35
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.04 E-value=0.53 Score=46.43 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++.+|+++-+.|..||..|+.....|--+.++|.++...|++.|.++
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999999999999999987
No 36
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.03 E-value=0.0024 Score=65.31 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=52.9
Q ss_pred ccchHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKL 301 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~Le-~EN~~Lr~el~~L~ee~~~L 301 (386)
+-.|.+.||.+|+++|+.+|.+ ||-|++....+|+.+|+.|+ .+|..|..+|..|+.+.+.|
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l 212 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL 212 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence 3467788899999999999999 99999999999999999999 88888777777765544443
No 37
>PRK04325 hypothetical protein; Provisional
Probab=94.02 E-value=0.37 Score=38.94 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++++||.++..++.-...|-..|...++++..|+.+.+.|..+|++++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998875
No 38
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.97 E-value=0.3 Score=40.52 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.=|+-+|++|+.+|..|..++..++.....|+.||..|+++...-+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888888888888877777788888888888777654
No 39
>PRK00736 hypothetical protein; Provisional
Probab=93.96 E-value=0.41 Score=38.15 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
+++++||.++..++.-...|-+.|.+-.+++..|..+.+.|.++|+..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45999999999999999999999999999999999999999999988653
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.92 E-value=0.19 Score=37.36 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+|+.+-..|+.....|+.+++.|..||..|++++..+.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666667777777777776653
No 41
>PRK04406 hypothetical protein; Provisional
Probab=93.75 E-value=0.44 Score=38.76 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++.+||.++..++.-...|-..+...++++..|+.+.+.|.++|..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788899999988888889999999988899999999999988888765
No 42
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.75 E-value=1.1 Score=39.56 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=48.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+..|-...||..-....++...++.|+..++.|+.++..+..++..+..+...|..++..+...++..
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556777777777787778887777777777777777777777666666666666555555543
No 43
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.58 E-value=0.83 Score=43.72 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|..+++.|+.|...|...+..|...+..++.+...|.+++.++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.25 E-value=0.38 Score=41.57 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
+|=.++..|++....|..++..|+.++..|..||..|+-+...|+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999863
No 45
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.22 E-value=0.18 Score=49.63 Aligned_cols=40 Identities=38% Similarity=0.443 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 016610 276 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSA 315 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~----~L~sEN~~LkeqL~~l 315 (386)
.+..|.+||.+|++|+..|++++. .|+.||++||+.|.-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455677788888887766644433 4899999999987753
No 46
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.04 E-value=1.9 Score=39.08 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+.|++.+-+--.-+++.++.|+.++..|..+...|..++..|+.+...|..+....+.+|..|.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888888888888888888888888888877777777777777777777764
No 47
>PRK00846 hypothetical protein; Provisional
Probab=92.95 E-value=0.71 Score=38.06 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
.+++++||.++...+.-...|-..+......+..|+.+...|.++|++++.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999999999999998863
No 48
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.86 E-value=0.78 Score=48.44 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|--+.+-|+.++.+|+.||..||..+..|+..+++|..+-+.+.++|..++
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444567788899999999999999999999999999888877777766653
No 49
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.62 E-value=1.7 Score=41.25 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
...+.++++++.+++.|+.+...++.++..+++++.+++.++...+..|.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555554444443
No 50
>PRK11637 AmiB activator; Provisional
Probab=92.30 E-value=1.8 Score=44.45 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.-+.+++.|+.++..++.+...+..+|..+..++..|+.+...|+.+|...
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666555565666666665555555555555555554
No 51
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.28 E-value=0.83 Score=37.49 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
==|-++++|..+-..|..|.+.++.....|..+.++|..|...-.++|..|
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777777777776655
No 52
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.24 E-value=0.78 Score=38.12 Aligned_cols=38 Identities=37% Similarity=0.431 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
++.||.+|...-..+.-|+-||..|+++...|..|+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555444
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.20 E-value=0.96 Score=43.61 Aligned_cols=40 Identities=35% Similarity=0.393 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 016610 276 KVDSLIDENASLKSEINQLSENSE---KLRQENAALLEKLKSA 315 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~---~L~sEN~~LkeqL~~l 315 (386)
....|.+||..|++|+..|+.+.. .|+.||..|++.|...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344555555556655555555444 6799999999987743
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.15 E-value=0.79 Score=41.36 Aligned_cols=52 Identities=40% Similarity=0.420 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el--~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
-++++.+|+.++..|+.+...|...+ ..|...+..|+.|+..|.++|..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777766665 56778889999999999999998875
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.14 E-value=1.1 Score=49.59 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
|-+.+|..+|+.|...|+.++....+++..|+.|.+.|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667778888888888888888888888777777766654
No 56
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=92.10 E-value=0.63 Score=40.51 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|-+|..-...|.+++..++++..+|++||+.|-+.|++|
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3445555555666777777788888899999999999887
No 57
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=92.09 E-value=0.23 Score=46.07 Aligned_cols=42 Identities=33% Similarity=0.550 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|+++|.++.+--++|.-|..|| ++-+.|+.+++.||.++.+|
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888877 33444555555555555554
No 58
>PRK11637 AmiB activator; Provisional
Probab=91.95 E-value=1.9 Score=44.38 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.......+.++.+++.+++.|..+...+..+|..+++++..+..+...|..+|..++
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445556666666666666666666666666666666666666666666664
No 59
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.90 E-value=0.75 Score=44.45 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+.++++.+.+.+.++.++..|+++.+.+..+++.|..|++.|+++|.
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444445555555556666666666666666666667766666664
No 60
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.82 E-value=0.72 Score=45.06 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
|+.+||+|+..+..++..|+.+++.|+..|-.|-+++.=+|-..
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 35566666666677777777777778889999999999987555
No 61
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.51 E-value=0.87 Score=33.82 Aligned_cols=41 Identities=44% Similarity=0.552 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
||...+.|++.-..|+.+...|.++.+.|++|...|+.++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56667777777777777777777777777778887777764
No 62
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=91.50 E-value=0.67 Score=41.79 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDEN-------------ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN-------------~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-++++-.|.++-..|+..- .+|..+...|.+++++|..||+.++.++..+
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555433 3455555555666666666666666555554
No 63
>smart00338 BRLZ basic region leucin zipper.
Probab=91.50 E-value=1.9 Score=33.15 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777888888887777777777777777653
No 64
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.33 E-value=0.91 Score=39.61 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
.+|=.++..|++....|..++..|++.+..|..||..|+-+-..|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999888863
No 65
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.75 E-value=1.2 Score=37.44 Aligned_cols=39 Identities=38% Similarity=0.479 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 016610 278 DSLIDENASLKSEINQLSENS------EKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~------~~L~sEN~~LkeqL~~lq 316 (386)
..|..+|..|..||..|+.++ .+...||.+|++++..++
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888887644 568899999999999886
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.74 E-value=4.2 Score=38.96 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 262 SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+......+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888888888888888888888888877777776655554
No 67
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.69 E-value=3 Score=32.03 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
..++.|+.+...|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555555444
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.66 E-value=4.6 Score=35.69 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++.|+.+++.++.++..+..+...|+.++..+...+..+++++.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333333333333333333333333
No 69
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.59 E-value=0.35 Score=45.51 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=27.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
|.+|+.+++ -+..++++.+|+.+|+.|+.+..++++.+..|-
T Consensus 92 R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 92 RQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred Hhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665 355667788888888888775555555555543
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.52 E-value=0.95 Score=48.15 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
..+|.++.++|+++..+|......|..+|
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 71
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=90.49 E-value=2.5 Score=33.12 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+++|...|..|..+...|..++..|+..+.....|-..-.++|.++
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788888888888888888888888888777777777777777654
No 72
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=90.44 E-value=1.1 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.+.++++++++++++.|+++|..|+.++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345556666677777777777777777666654
No 73
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.32 E-value=2.1 Score=34.43 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSE-------INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~e-------l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+++.|..++.....+|..|+.+ +.....++.+|..||..|+.+|...
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555544 4555556666666666666666554
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.15 E-value=1.5 Score=39.31 Aligned_cols=49 Identities=41% Similarity=0.498 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+...++|+.++..|+.++..+..+|..|+.++..|+.+...|..+|..+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666654
No 75
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.52 E-value=2.4 Score=33.99 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L 294 (386)
|..+.+.|..+|.....++..|
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 76
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.37 E-value=0.46 Score=37.47 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|...|+.+|..|.+++.+|+.||..||+...-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 455567777777777888888899999876554
No 77
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=89.23 E-value=0.2 Score=42.54 Aligned_cols=50 Identities=38% Similarity=0.504 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+|+.|...+..|..+|..|..++..|..++..+..+...|+..|...+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 36889999999999999999999999999999999999999988886553
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.00 E-value=1.5 Score=47.51 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhc
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVL 325 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~ 325 (386)
+.+.+.|..-++.+.++..++..|+++...++..+..|.++...|+.||..|+.+|..++.....|+.+
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 344455555566677777888888888888888888888888888888888888888876555555544
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.83 E-value=3.9 Score=40.14 Aligned_cols=50 Identities=28% Similarity=0.356 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
...++..|..++..++.+...|..++..|..+...|+.+...|+.++..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666666666666666654
No 80
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.82 E-value=0.55 Score=49.76 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=19.5
Q ss_pred CCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCC--CCccccCC
Q 016610 44 AIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST 84 (386)
Q Consensus 44 ~~p-p~f~s~vas~~~phPYmWG~~qpmmppyGt--PY~a~Yp~ 84 (386)
++| |+|+.+ ++||.+ +.+.+.||- ||-+|||-
T Consensus 420 ppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~ 454 (483)
T KOG2236|consen 420 PPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA 454 (483)
T ss_pred CCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence 444 677544 667754 445566765 87777754
No 81
>PRK02119 hypothetical protein; Provisional
Probab=88.80 E-value=3.1 Score=33.64 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGN 319 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l--ql~~ 319 (386)
++..|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..| ++..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999988 4444
No 82
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.77 E-value=3.4 Score=40.37 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-+.+|..+++.|+.|+..|+-+|+++.-+++++....+.|-.+|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888888887777764
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.74 E-value=4.1 Score=42.44 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
++.|+.++..+..++..|.+++..+..+
T Consensus 367 i~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 367 IEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 84
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.70 E-value=0.097 Score=53.77 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=38.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 288 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr 288 (386)
|.|=..+||.+|-|||.|||.....|+.+.+.+..+|..|.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 36678899999999999999999999999999999999988
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.67 E-value=7.8 Score=36.61 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
.+++....++.+.+-+.-+.+-..-+..+..++.++..|+-++..|..++..|.++...|.
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778877777776676777777777777777777777777777766665554
No 86
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.57 E-value=6.6 Score=37.03 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 252 KQSNRESARRSRLRKQAEAEELSRKVDSL 280 (386)
Q Consensus 252 k~sNRESARRSRlRKqa~leeLE~rVe~L 280 (386)
++....+-+..+...+.+...|+.++..-
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555444443
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.57 E-value=5.1 Score=42.26 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=56.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
+|++-.+++=+.-.++....+.+...|+.++..|+.++..|..++......+.+++..+..+...|..|+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 444445555555556666677788899999999999999999999998888888888888888888887533
No 88
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.54 E-value=1.8 Score=47.55 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
..++.+||.+-.+|.+|..++..+++.|++.+.+...|..+|+-.|...|...
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 46788899999999999999999999999988888888888888888776444
No 89
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.52 E-value=3.6 Score=39.91 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|+++.+.+.++-..|+.+++....+++.+..++..|+.+.+.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55566666666666666666666666667777777777766653
No 90
>PRK04406 hypothetical protein; Provisional
Probab=88.44 E-value=3.5 Score=33.59 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999988
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.43 E-value=5.6 Score=43.23 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=5.3
Q ss_pred CCCCCCCCCCcc
Q 016610 53 IASGHAPQPYMW 64 (386)
Q Consensus 53 vas~~~phPYmW 64 (386)
+.+...||++=|
T Consensus 28 lt~~~~ps~~DW 39 (546)
T PF07888_consen 28 LTPGFHPSSKDW 39 (546)
T ss_pred cCCCCCCCCCCe
Confidence 333344445444
No 92
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.37 E-value=3 Score=38.99 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.++.+.+|+.+++.+......- .+-..+-+++..|+.++..|+.+|..+
T Consensus 79 ~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555443322111 222233345555666666666666644
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.28 E-value=3.1 Score=41.71 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh-----ccccchhhcccccCC
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENS-----------EKLRQENAALLEKLKSAQ-----LGNKQEIVLNEDKRV 331 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~-----------~~L~sEN~~LkeqL~~lq-----l~~~~Ev~~~~~~~~ 331 (386)
.+|++|+.+...|+.+|+.|+-|+.+++++. ..|+.+|..+++.-..++ +.+..+. +.-.++.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd-LErakRa 130 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD-LERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHhhhh
Confidence 4566667777777777777777777766533 346666665555444442 2222222 1134677
Q ss_pred CCcchHHHhhhccCCCCCcCcccccccccccC
Q 016610 332 TPVSTENLLSRVNNSGTVDRNMEEGGHLFEKN 363 (386)
Q Consensus 332 ~p~~~e~lls~vd~~~~~~~~~~~~~~~~~~~ 363 (386)
.-++.++|-+++|.. ..|+.--|.+++|+.
T Consensus 131 ti~sleDfeqrLnqA--IErnAfLESELdEke 160 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQA--IERNAFLESELDEKE 160 (333)
T ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence 778899999998853 334444455555554
No 94
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=1.7 Score=47.63 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++..|+.+|+.|+.||..|..++.+|+.++..|+++...++.++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666655555544
No 95
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=88.12 E-value=6.4 Score=37.45 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
--+.||..+++ ...++..|+.+=..|..++-.+...|..|+.|...|+.+...++
T Consensus 162 vN~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 162 VNRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555444 66777788888888888888888888888888888888777653
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.07 E-value=4.8 Score=40.24 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.+++.|..++..+..++..++.++..|+.++..+..+...+.+++..
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444444443333333
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.04 E-value=1.4 Score=44.67 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++|..++..|+++|..|+.++..++.+|..|..||..||+....++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777777777777777777766664
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.93 E-value=2.3 Score=36.38 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 274 SRKVDSLIDENASL--KSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 274 E~rVe~Le~EN~~L--r~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.|+..|+.+...| +.++..|+-++.+++-+...|.++|+.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444444444 4444444444444455555555555443
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=4.4 Score=45.93 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016610 298 SEKLRQENAALLEKLKS 314 (386)
Q Consensus 298 ~~~L~sEN~~LkeqL~~ 314 (386)
...|..|...|..++..
T Consensus 439 ~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.75 E-value=3.8 Score=36.18 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L 294 (386)
|..++..|+.+-..|..||-.|
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 101
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.64 E-value=4.2 Score=33.37 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
.+++.+||.++..-+.-..+|...+...+..+.++..+.+.|-+++++++..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3578899999998888889999999999999999999999999999988643
No 102
>PF15294 Leu_zip: Leucine zipper
Probab=87.57 E-value=1.7 Score=43.40 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
|..++..|..||..|+.++..+..+|.....|...|..+|.++|.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999986
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.55 E-value=8.4 Score=33.76 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|..++..+..+|..|..+|..|-.+|..
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666667777777777666654
No 104
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=87.41 E-value=4 Score=40.18 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=38.0
Q ss_pred ccchHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERR----KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 240 lqdErElKR~RR----k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
..+++...|+|| ..+-|..+|.--..-+.++.+|+.+.+.|+.++.+|++++..|+..+..
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 2334555555555556667777777888888888888877777765544
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.21 E-value=5.2 Score=41.40 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
=.|-+.+...||.-+..|++||..|.-++..+.++|.+.+.|++.|..+|.+.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34566777888888999999999999999999999999999999998888875
No 106
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.19 E-value=2.8 Score=41.29 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.++|..+.+.+.+||..|.+++..|+.++..+..+...|+.+..
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443333
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.14 E-value=2.6 Score=42.30 Aligned_cols=43 Identities=35% Similarity=0.502 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++++.+++.|+.|...|.+++..|..+...|..|...|+.++.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444333333333333333
No 108
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=87.12 E-value=3 Score=33.95 Aligned_cols=47 Identities=34% Similarity=0.374 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEK--------LRQENAALLEKLKSAQ 316 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~--------L~sEN~~LkeqL~~lq 316 (386)
+.+++..++.|+.||-.|+-+|-.|.+.+.. +..||-.|+..+..++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888776653 4666666776666664
No 109
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.07 E-value=2.4 Score=36.29 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.+.+|+++++.++++|..|+.++..|++++..|...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 466788888888888888888888888888877753
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.00 E-value=3.9 Score=31.65 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.++++.+|+.+++.|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666666666555555
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.91 E-value=8.9 Score=37.65 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHh
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE---------NSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e---------e~~~L~sEN~~LkeqL~~l 315 (386)
.++.+.-.+.+++.=.-++.++++|+.+|..++.+...++.++..++. ++..|..|...++.++..|
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577778888888889999999999999988888888777654 3344555555555555554
No 112
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.86 E-value=2.7 Score=36.97 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+|=.+|..|+.....|..++..|++++..|..||..|+-+...|+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 455688999999999999999999999999999999999999986
No 113
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.82 E-value=7.8 Score=36.56 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+...++.+|+.++.+|+.+...|..+......++.+|..+.+.|.+.+.+.+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666655665566666666666666666666666654
No 114
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.79 E-value=4.1 Score=41.51 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
..|..-+...+.+|..|..++..|++++.++..++..||+++...+++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 5677778888889999999999999999999999999999998876555
No 115
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.73 E-value=5.1 Score=36.83 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++.++..+..|++.|++++.+.+.|...|+.|.+.++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888999999999999999999999998875
No 116
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.56 E-value=2.9 Score=32.64 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
+++||.++..|+.....++++++.|++.++++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555555555444443
No 117
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.53 E-value=2.8 Score=41.06 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
++..|||+++..+..++..|+.|+..|+..+.+|-...+-|..--
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345788888888888888888888888888888888777765544
No 118
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=86.48 E-value=3.8 Score=34.64 Aligned_cols=43 Identities=35% Similarity=0.457 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
|+-|-...+.+|+.|+.+|..|..++..|+.++...+.|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555444444444433
No 119
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=86.26 E-value=4.6 Score=40.77 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=33.0
Q ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 245 ELKRERRKQSN---RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 245 ElKR~RRk~sN---RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
..||+.||..- |+--|+-++-=.-+|++|+.|-+.|+..-.+|.+||..|++-+.+..
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666632 33333333333345666667777777777777777777766655443
No 120
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.93 E-value=13 Score=35.23 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+.+++.+++.|..+++.++.++..++.++..+++.+
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 121
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.91 E-value=5.5 Score=32.07 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccch
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQE 322 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l--ql~~~~E 322 (386)
.+|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..| ++...++
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999999999988 4544433
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.68 E-value=16 Score=33.27 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 241 QNERELKRERRKQSN----RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 241 qdErElKR~RRk~sN----RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+-+.++||.+|...| =++..|--.--+...+.+....+.-++++..|..++..+...+..|..|...|+.+-.++
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655443 123333333344444444444444444555555555555444444444444444444443
No 123
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.60 E-value=3.2 Score=39.65 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|..||..|...+..+.+...+|..|+..|+.++..+
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 124
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.52 E-value=3.5 Score=41.57 Aligned_cols=73 Identities=27% Similarity=0.269 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 243 ERELKRERRKQSNRE-----SARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 243 ErElKR~RRk~sNRE-----SARRSRlRK-qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|-|.|-.+=|++|.. ++..-..-- +..|++|+..+..|..++.....++.+++..+..|+.|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777732 111111111 4455666666666666666666667777888888888888888888764
No 125
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.32 E-value=6.3 Score=36.31 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 016610 279 SLIDENASLKSEINQL 294 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L 294 (386)
.++.+...|...+..|
T Consensus 86 ~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 126
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.27 E-value=2.8 Score=32.35 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++..++||+.++..=. ..=...-...+.++.+|+.||..|+++|.-+|
T Consensus 2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667766654322 11112234455666777778888888877654
No 127
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.24 E-value=6.5 Score=45.65 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 259 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 259 ARRSRlRKqa~leeLE~rV-e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++++.+....+.+++.+. ..|..+..++..++..|+++++.|+.++..|++++.++
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555 55555556666677777777777777777777777765
No 128
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.05 E-value=6 Score=43.19 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.|+..|+.+...+......|..|+....++|+.|..+|..|+.+|..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777777777777777777777777763
No 129
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.97 E-value=6.7 Score=31.71 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-|.+.+..|..+-+.|......+...|..|+.++..++.+...|+.++..+
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888888888888888888888888887777765
No 130
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.93 E-value=4.2 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
.+.++.+|+.+++.|+.+|..|.+++..+.+.+..|
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554444444443
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.92 E-value=7.2 Score=34.19 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=33.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
.+-++.-.|..+-|+..=..+-++|+..+..|+.+|..+.+.+..|+.++..+.....
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666665555555666666666666666666666666655555544433
No 132
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.82 E-value=1.5 Score=38.67 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
|...|+.+|..|.+++..|+.||..||.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555555555556666666664
No 133
>PRK00295 hypothetical protein; Provisional
Probab=84.82 E-value=6 Score=31.53 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|+.++..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999988888888888888888888888888888887
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.57 E-value=19 Score=32.69 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ 295 (386)
+++.++.....+.+++..|.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 135
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=84.54 E-value=3.1 Score=35.87 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
|...+..|+.++..+..++.+|++.+.++..+...|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555444
No 136
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.27 E-value=8.8 Score=39.71 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|-+++++.|.++-++|..-.++|+.++++|+++...|......|+.++++
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344556666666667777777777777777777777777777777777776
No 137
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.16 E-value=14 Score=36.94 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.+++.++.++...+++...++.++...+.++..|+.+-..|...|..+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777776666553
No 138
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=84.05 E-value=8 Score=34.44 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.||..|+..|+.|+..+..-...|...+.-|+-.+...+.++..+.
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4666777777777777777777777777778888888887777654
No 139
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=83.93 E-value=1.9 Score=44.46 Aligned_cols=25 Identities=44% Similarity=0.351 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
...|+.||..|++|++.|+.++++|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 140
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.78 E-value=6.8 Score=37.48 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
|..++..|..+|..|..+...|+.+...|..++..|+.+|
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444444444444444444444444444444
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.76 E-value=23 Score=31.15 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
..--+.-.++|..+-+.|+.-+..|..+...+.+.+..|..+...++..|
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444433
No 142
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.58 E-value=3.9 Score=36.87 Aligned_cols=48 Identities=33% Similarity=0.468 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~--~~L~sEN~~LkeqL~~lq 316 (386)
++.+|+.++..|+.++..|+.++..|.... .+|..+...|++++..++
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888777777654 667777777777777763
No 143
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=83.53 E-value=18 Score=30.30 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++...++..+..=..|...+..|++++..|..|...-..++-.+....+.|..|+..|+..+..-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 55667777888888999999999999999999999999999999999999999999999888764
No 144
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.52 E-value=12 Score=29.71 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|..++...+..|-.+.+++.....++..|..|...|+.++..++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444456677777777777777777777777777777777665
No 145
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.51 E-value=4.7 Score=42.13 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.|..-|.|-.+--...|..++++..|...|+.+++++...-.-|..|+..||+-++.++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455556666666667777888888999999999999999999999999999999988874
No 146
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.49 E-value=4.1 Score=31.81 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+++|+.+...|...+..++.+++.|..+...|.+-+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444444444444444433
No 147
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.45 E-value=19 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+.-...++.++...+..|..|..+|..|+++++.+++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566777778888888888888888877777664
No 148
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=83.29 E-value=20 Score=32.00 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN-~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|+.....|..+. ..++.++..|--.+..+...+..+|.+|+.|
T Consensus 64 ~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 64 VKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 333444444444333 3444555555555566677777777777765
No 149
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=83.15 E-value=4.8 Score=36.15 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+....+-+..|+.||..|+..+..+++.++.=+.....|+++|+..|
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q 126 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ 126 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44455667899999999999999999999999999999999998654
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.02 E-value=17 Score=33.76 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+..|+.++..|+.+...+..-+..|+.++..|..++..|.+++..++
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555555555555555555543
No 151
>PRK09039 hypothetical protein; Validated
Probab=82.68 E-value=9.5 Score=38.74 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016610 280 LIDENASLKSEINQLS 295 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ 295 (386)
|+++...|+.++..|+
T Consensus 142 L~~qI~aLr~Qla~le 157 (343)
T PRK09039 142 LNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 152
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.61 E-value=10 Score=36.35 Aligned_cols=75 Identities=24% Similarity=0.268 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSEK----------------- 300 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~----leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~----------------- 300 (386)
-|.-.+|.||-...+.++-.-+-+=-++ +...-.++..|+..|..|..+...|+..|.-
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQr 97 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQR 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHH
Confidence 4566788888888888775444433332 2333355677888888888888888776643
Q ss_pred --------HHHHHHHHHHHHHHhh
Q 016610 301 --------LRQENAALLEKLKSAQ 316 (386)
Q Consensus 301 --------L~sEN~~LkeqL~~lq 316 (386)
++.|.....++|++|+
T Consensus 98 FGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 98 FGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777773
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.61 E-value=20 Score=33.83 Aligned_cols=46 Identities=33% Similarity=0.374 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.+..+..++..++.+...|+-+...|.++|.+|+.|-..|..+...
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555544444
No 154
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=82.58 E-value=3.9 Score=44.34 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=44.0
Q ss_pred ccchHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERR---KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 240 lqdErElKR~RR---k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++..++.++.++ ..+++..+|...+-+++.+++++++++.|+..+=.=-.++.+..+++++|..|-+..++++..
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~ 237 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555454444444 445677777788878889999999999999862222223334444444444444444444443
No 155
>PRK00846 hypothetical protein; Provisional
Probab=81.94 E-value=9.4 Score=31.54 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-++|+.|+..|+........-|..|.+.+.+...+...|+.+|..+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999998876
No 156
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.94 E-value=21 Score=35.49 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 244 RELKRERRKQSNRESARRSRLRKQAEAEE---------LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlRKqa~lee---------LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.++.+.++++...-+.+ +..|++.+.. +...+..+..+|..+.+++..-++.+..|+.+...|+++++.
T Consensus 141 del~e~~~~el~~l~~~--~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSRK--IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565554443333 2333333322 445566777899999999999999999999999999999999
Q ss_pred hh--ccccchhhcc
Q 016610 315 AQ--LGNKQEIVLN 326 (386)
Q Consensus 315 lq--l~~~~Ev~~~ 326 (386)
|+ ....+|++|.
T Consensus 219 L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 219 LQAQAQDPREVIFA 232 (258)
T ss_pred HHHhhcchHHHhhH
Confidence 96 4444777774
No 157
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.93 E-value=20 Score=29.87 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSL-----IDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 268 a~leeLE~rVe~L-----e~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.++..||.+++.- ...+..|..++..|+.+...|..+|..|+.++.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666665532 225556788888888888889999999998875
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.86 E-value=6.3 Score=39.29 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 016610 253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR----QENAALLEKLKSAQ 316 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~----sEN~~LkeqL~~lq 316 (386)
+++..-++.--.+....++++..+++.++.++..+..++..|+.++..|+ .++..|+.++..++
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445556666666666666777777777766666666665543 34445555555443
No 159
>PRK03918 chromosome segregation protein; Provisional
Probab=81.84 E-value=16 Score=40.36 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=7.8
Q ss_pred CcccccCCCCCCCC
Q 016610 139 GLAMSIGNASAESA 152 (386)
Q Consensus 139 g~~m~~g~~~~~~~ 152 (386)
|+++++|.+.+||+
T Consensus 24 g~~~i~G~nG~GKS 37 (880)
T PRK03918 24 GINLIIGQNGSGKS 37 (880)
T ss_pred CcEEEEcCCCCCHH
Confidence 55666665555554
No 160
>PRK04325 hypothetical protein; Provisional
Probab=81.83 E-value=7.6 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
....|+.|+..|+.....+...|..|.+.+.+...+...|+.+|..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999888
No 161
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.65 E-value=5.7 Score=30.75 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
..+..++..|+.++..|+.++..|++++..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444
No 162
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.63 E-value=13 Score=34.78 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888888888888877777666655443
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.55 E-value=9.5 Score=42.12 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 253 QSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 253 ~sNRESARRSRlRK-qa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
..+|..+.+.+..+ +.+..+|+.++++|+.++..|+.++..++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 344555666666666666666666655544
No 164
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=81.48 E-value=5.4 Score=41.16 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|..|++++.++..-..+|..+.+|+.+++.-|..|...-..||+.|..
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888899889999999999999999999999999999998886
No 165
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.33 E-value=15 Score=38.31 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016610 269 EAEELS 274 (386)
Q Consensus 269 ~leeLE 274 (386)
++.+|+
T Consensus 338 ~i~el~ 343 (562)
T PHA02562 338 KLLELK 343 (562)
T ss_pred HHHHHH
Confidence 333333
No 166
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=10 Score=39.31 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..+++.++.+-+|..|-.+-+|+.. |+|..=..+|+.+..+|..++..|+..++-|....+.-.++++++
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Confidence 34444455555556666555555544 444445555555555555555555555555555444434444443
No 167
>PRK14127 cell division protein GpsB; Provisional
Probab=81.13 E-value=3.8 Score=35.77 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
+.|+++...++.|..||..|+.++..|++++..+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433333
No 168
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.12 E-value=13 Score=34.79 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASL 287 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~L 287 (386)
.+|+.+.+.|+.+...|
T Consensus 130 ~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 130 EELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 169
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.03 E-value=20 Score=39.16 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.8
Q ss_pred ccCCCc
Q 016610 81 IYSTGG 86 (386)
Q Consensus 81 ~Yp~Gg 86 (386)
.|+||+
T Consensus 15 ~Y~P~~ 20 (546)
T PF07888_consen 15 SYIPGT 20 (546)
T ss_pred ccCCCC
Confidence 444444
No 170
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.96 E-value=11 Score=29.96 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|+.++..|+.....+...|..|.+.+.+...+...|+.+|..|.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888889998888888888888888888888888888888873
No 171
>PRK14160 heat shock protein GrpE; Provisional
Probab=80.95 E-value=8.6 Score=37.07 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
...+..|+.++..|+.++..|..++..|+.++.++.++...+|.+...
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777778888888888888888888888888887777777665
No 172
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.93 E-value=10 Score=41.26 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
+++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...+|.
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33344444443332333444444444444444444444444444444444444444443
No 173
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.87 E-value=5.7 Score=42.47 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEIN---------------QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~---------------~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++|..+-+.|.+||..|+++.. +|.++.++|..|...|+..|..|
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554322 33334445555555555555555
No 174
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.86 E-value=5.2 Score=42.82 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+++|+.|+++++.|.+.+..|.++|+.|+.++..|+.+...+++++.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34455666666666666666677777777777777666655555543
No 175
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.56 E-value=14 Score=42.13 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
....++-..=+--+++-+..++.|.+.+..|+-||.+|..++.....+..+|+.++..||.+|...
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444555666778888899999999999999999999999999999999999999999999843
No 176
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.34 E-value=19 Score=41.72 Aligned_cols=46 Identities=26% Similarity=0.418 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSE---------------NSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~e---------------e~~~L~sEN~~LkeqL~~lq 316 (386)
+.|+.+|+.|+..+.+|.-.++.|+. ++.+|+.+|..||+-|-.|+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554 33457777777777666664
No 177
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.31 E-value=17 Score=31.62 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+...|+.+...-...|.++.++++.|.-.|.+|-.++..||
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666666666666777766666665
No 178
>smart00340 HALZ homeobox associated leucin zipper.
Probab=80.30 E-value=3.6 Score=30.77 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 292 NQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-|++.|+.|..||+.|+.+|++|+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777775
No 179
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=80.20 E-value=20 Score=34.17 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
...|-.-+..+..||..|+.++..|.+++..|+..+..|..+-..|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667788899999999999999999999999999888887753
No 180
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.97 E-value=22 Score=30.42 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSL--IDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~L--e~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
...++..||.+++.| ..+...|+-++..++-++..|..+.+.+..++.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888 77777788778777777777777777776666644
No 181
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.93 E-value=7.4 Score=30.93 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
...++..++++++.|+.+|..|+.|+..|
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444
No 182
>PRK00736 hypothetical protein; Provisional
Probab=79.93 E-value=12 Score=29.80 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.|+..|+.....+...|..|.+.+.+-..+...|+.+|..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888888888877
No 183
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=79.85 E-value=5.1 Score=38.46 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.||..|..+|..+.+++..|+.||..|++-...+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777766654443
No 184
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.82 E-value=2 Score=31.89 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
.+|-..|..|..++..|..++..|..||..||+++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34444556666666666666666666666666654
No 185
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.77 E-value=2 Score=31.90 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el 291 (386)
++++...||+=|+..-... ..|.+|+.++..|..||..|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3566777888877765544 346777777777777777777654
No 186
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=79.62 E-value=7.6 Score=42.37 Aligned_cols=68 Identities=26% Similarity=0.316 Sum_probs=46.7
Q ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 238 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 238 ~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
....-+.+.|-.+|.| |+=|-.+-.++-++.+ ++--..|..+|+.|-++|+.|+.||..||.+|..+.
T Consensus 269 stp~~~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 269 STPNVGSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred CCCCCccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3344688888888665 2334344444443322 223356888899999999999999999999999874
No 187
>PF15556 Zwint: ZW10 interactor
Probab=79.18 E-value=33 Score=33.59 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.++|.+.+.-.+....++..|.....+++..-..-..++..|.+++..|+.+-..-+++|..
T Consensus 119 eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 119 EKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555555555555554444444443
No 188
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=79.11 E-value=18 Score=31.66 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=29.2
Q ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 239 WIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE 290 (386)
Q Consensus 239 ~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~e 290 (386)
.+.+||+-+.++|..+||||-+. |+.-+-.+..+-..|..+|.-+.++
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~q 94 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQ 94 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHH
Confidence 36678888888999999987543 3333333333333455555555444
No 189
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.91 E-value=8.9 Score=35.95 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.+++.|..-|.-|+.++......+..|..++..|...+..
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 190
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.91 E-value=1.2e+02 Score=34.18 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.++..|+.+|..|..++..|....++=+....+|..+|.
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443333333333333333
No 191
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.89 E-value=18 Score=36.48 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~---~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
-|+.+-+---++++++++++.-..|.-|..|+. .|-+.++.|+.|-+.||++|+-
T Consensus 125 ErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556678888888888888888887765 4556778888888888888874
No 192
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.81 E-value=13 Score=34.11 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
++.+++.|+.|......+++.|+++++.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 193
>PRK15396 murein lipoprotein; Provisional
Probab=78.75 E-value=14 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++.|..+|..|..+...|...+..++........|-.+-.++|.++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888888777777777777666666654
No 194
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.75 E-value=24 Score=37.31 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+|.+-...+.++..+|..++..|.+++.+|+.+...|+.+|..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555556666666677777777777777777777776653
No 195
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.75 E-value=38 Score=29.99 Aligned_cols=45 Identities=31% Similarity=0.394 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 287 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~L 287 (386)
|+-.-..||+..-..+.+.--.|=.+.-+.|..++-.|..+|..+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343444555555555554444444444455555555555555443
No 196
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.74 E-value=2.3 Score=33.66 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++.|..++.+|+.+|..|..|...|++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 197
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.74 E-value=17 Score=40.86 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSE----------NSEKLRQENAALLEKLKS 314 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~e----------e~~~L~sEN~~LkeqL~~ 314 (386)
...+|+.||-.|.+.|..|++ ++..|..|+..|+.+|.+
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766654 444455555555555544
No 198
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=78.68 E-value=10 Score=31.48 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
|.-|++|-.||+..+.||..|..+..-|++-+..|..
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665555543
No 199
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.68 E-value=20 Score=33.09 Aligned_cols=43 Identities=28% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|..+|+.|+.+|..|..++..+..+...|......|+.++..+
T Consensus 94 L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433
No 200
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.52 E-value=25 Score=42.61 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=12.8
Q ss_pred CCCCcchHHHhhhccCCCC
Q 016610 330 RVTPVSTENLLSRVNNSGT 348 (386)
Q Consensus 330 ~~~p~~~e~lls~vd~~~~ 348 (386)
...+++.++|...+++-..
T Consensus 431 ~~~~~SdEeLe~~LenF~a 449 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQA 449 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 3457788888877776543
No 201
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.42 E-value=39 Score=30.59 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 258 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..+.-+...+++++.++..++.+.++-..|.+++..+++++..++.+...+++.+..
T Consensus 120 ~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 120 ELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ 176 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666666666666644444444444444444444443333
No 202
>PF14282 FlxA: FlxA-like protein
Probab=78.38 E-value=8 Score=33.04 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDE----NASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 271 eeLE~rVe~Le~E----N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|+.++..|... ...-..++..|..++..|..+...|..+...
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555551 1334444555555555555555555544443
No 203
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.35 E-value=27 Score=31.26 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE-------~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
+..+++..-+.+.+.-.+|++.++.|+ .+|+.|+.+...+..++..++..+.
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666665555554 2455555555555555554444433
No 204
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=78.19 E-value=7.1 Score=35.12 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
+...|..++.|+.+...=-.||..|++++..+...|..|..+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444455555555555555555555555555555555443
No 205
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=78.03 E-value=6.3 Score=42.07 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 320 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~ 320 (386)
++.|+.....-..+...|+++++.|+.+|..|.++|+.+|....
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 56788888888888999999999999999999999999875543
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.98 E-value=6.2 Score=40.09 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
++-+.+--.+......+...|..+|.+-.+++.....|...|..+|..+|..
T Consensus 198 qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r 249 (306)
T PF04849_consen 198 QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQR 249 (306)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555556677777777777788888888888888887643
No 207
>PRK14162 heat shock protein GrpE; Provisional
Probab=77.95 E-value=9.5 Score=36.27 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=7.0
Q ss_pred hhhHhhhhcCC
Q 016610 367 GAKLHQLLDAS 377 (386)
Q Consensus 367 ~~kl~qll~~~ 377 (386)
.+.+|+-+..-
T Consensus 149 DP~~HEAv~~~ 159 (194)
T PRK14162 149 DPTLHQAVQTV 159 (194)
T ss_pred ChhHhhhheee
Confidence 46777777543
No 208
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.93 E-value=32 Score=33.44 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+..++.|+..++..+..|+.++..|+..|..|..+|..++
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 34556666666666666666667777777777777776664
No 209
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=77.91 E-value=24 Score=35.30 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQ 267 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKq 267 (386)
|+++|-.-|++..+.=--+|-+|-|
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ 35 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQ 35 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333333
No 210
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=77.90 E-value=10 Score=33.71 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.|..-+++|+.+++.|+-+...|.+.-..|++++.+|.++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777666666666666666666655555544
No 211
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.81 E-value=13 Score=29.17 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
.++++|..+...|..++.+|...+..|+.+....+++.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665555555555444443
No 212
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.67 E-value=20 Score=41.89 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++..+.+.|+-++++|+.+...+..++..+..++..|..|+..|+.++...+
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345567788888888888888888888888888888888888888877664
No 213
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.47 E-value=16 Score=40.37 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDE 283 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~E 283 (386)
.+.+++.+|+.+++.+..+
T Consensus 119 EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766554
No 214
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.43 E-value=36 Score=28.33 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 016610 275 RKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL~~l 315 (386)
.+++.|+.+-..+.++|..+.. ....|..|-..|+.+|..+
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444333333 2344444555555555544
No 215
>PRK12705 hypothetical protein; Provisional
Probab=77.36 E-value=23 Score=38.33 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
|+.+.+.|......|..+-..|..+...|
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444443333333
No 216
>PRK14161 heat shock protein GrpE; Provisional
Probab=77.33 E-value=9.8 Score=35.64 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
-.+-|+.-|+.++.+...|..++..|+.++.++.+|...+|.+...
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666665555555543
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.24 E-value=8.5 Score=37.60 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 262 SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
+-..=+.++++|+.+|..|+-+++++..++++++++-..+..+...+..++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334668999999999999999999999999999999999988877766544
No 218
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=77.19 E-value=18 Score=30.45 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|...++.|..-...|.++...|..++.+|...|++.|.+++.-
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555566777777777653
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.18 E-value=12 Score=37.41 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
=+.+++.|..+|+.+..+...+..++.++.+++.+|..+...|++.|.+-
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777777777777777777664
No 220
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.17 E-value=5.6 Score=38.14 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|.|.++++.|-.||++|++.++.|+ ||..||.-|.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHh
Confidence 46777888888899998888776654 577777776664
No 221
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.13 E-value=3.9 Score=34.44 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
|+.+++.|..+++.|+.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666666666666666666665554
No 222
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.12 E-value=11 Score=41.32 Aligned_cols=46 Identities=37% Similarity=0.467 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.++++|..+++.++.+...|..++.++.+++...+.++..|.+++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555544
No 223
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.98 E-value=8.6 Score=30.52 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.....+..++..+++++..++.||..|+.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777777777765
No 224
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.74 E-value=39 Score=32.40 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-|++|. +.+.-.+-..|.-..-+++...|+..+..-...-.....+-..++++...|+.|...++.+|..||
T Consensus 102 ~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 102 DVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544 466666777777777788888888888777776666666666666666666666666666666664
No 225
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=76.74 E-value=5.9 Score=43.64 Aligned_cols=45 Identities=33% Similarity=0.428 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|-.+|++|..|+..|+.|+...++...+|+..+..|.++|+.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999888877777777777777777776665
No 226
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.60 E-value=23 Score=37.99 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccccc
Q 016610 250 RRKQSNRESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSEK----LRQENAALLEKLKSAQLGNKQ 321 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~----leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~----L~sEN~~LkeqL~~lql~~~~ 321 (386)
+-.++|=++++.+-.||.++ +++++.+...++.+|..|.+....++.++.+ +..++.++-++|.+|| .|.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq-EQlr 445 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ-EQLR 445 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34456667777776666543 4566677777777777777665544444333 3333444444555553 3445
Q ss_pred hhhcc
Q 016610 322 EIVLN 326 (386)
Q Consensus 322 Ev~~~ 326 (386)
++++.
T Consensus 446 Dlmf~ 450 (493)
T KOG0804|consen 446 DLMFF 450 (493)
T ss_pred hHhee
Confidence 55554
No 227
>PRK02224 chromosome segregation protein; Provisional
Probab=76.49 E-value=27 Score=38.80 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
.+++.++.+|+.+++.|+.....+..++....+++..|..+...|++.+
T Consensus 505 ~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555544444444444433334444444443333333
No 228
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.36 E-value=19 Score=41.95 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=36.8
Q ss_pred HHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 250 RRKQSNRESARRSRLRK------------QAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 250 RRk~sNRESARRSRlRK------------qa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
|-+.-+|..|+...++. ..+|++|+..+-.|+.||..|..+|..|..
T Consensus 500 r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 500 RDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445566776666554 367899999999999999999999998876
No 229
>PRK14154 heat shock protein GrpE; Provisional
Probab=76.16 E-value=10 Score=36.53 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=8.5
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.||+-+..-+.
T Consensus 164 DP~~HEAv~~~~~ 176 (208)
T PRK14154 164 DPALHEAMSVQAV 176 (208)
T ss_pred ChhHhheeeeeCC
Confidence 5778887765443
No 230
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.00 E-value=11 Score=39.16 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
|+.+++.|+.++..|..++..+++++.+++.|+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444444444443333
No 231
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.99 E-value=29 Score=29.37 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
....+|..|+.++..|..+...|..+|..+
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544
No 232
>smart00340 HALZ homeobox associated leucin zipper.
Probab=75.97 E-value=6.1 Score=29.55 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.|+-|..-++.|..||..|+.|+..|+.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888877754
No 233
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=75.93 E-value=25 Score=32.50 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
++-.+..+++++.|..|+-.-+.|-.++.+|..++...+.....+..+|..|...+
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677788889888889999999999888777766666666666654433
No 234
>PHA02682 ORF080 virion core protein; Provisional
Probab=75.91 E-value=7.9 Score=37.73 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccccCCCCcchHHHhhhccCC
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNS 346 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~~~~~~p~~~e~lls~vd~~ 346 (386)
|.+|.++...|..|..|-..|..+|+..++-....-.. ||.-|... +. .- -...--|+.||||+
T Consensus 214 kkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdD---LRrLl~~~--~v----~~-------~~tps~l~drvdnt 277 (280)
T PHA02682 214 KKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDD---LRRLLTGG--GV----AR-------RDTPSALRDRVDNT 277 (280)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHH---HHHHHhcC--Cc----cc-------cCChHHHHHhhhcc
Confidence 34678899999999999999999998876644333322 22222211 11 00 01345688899998
Q ss_pred CC
Q 016610 347 GT 348 (386)
Q Consensus 347 ~~ 348 (386)
++
T Consensus 278 gt 279 (280)
T PHA02682 278 GT 279 (280)
T ss_pred CC
Confidence 75
No 235
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.82 E-value=15 Score=33.02 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR---QENAALLEKLKSA 315 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~---sEN~~LkeqL~~l 315 (386)
++-.++..|..++..|+.+...|..++..++..+.... ..+..|..+|..|
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 34444455555555555555555544444444333222 2334454454444
No 236
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=75.76 E-value=11 Score=32.63 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-+.|...+..|..++..+.+++++|+.++..+.++++.++
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666653
No 237
>PRK14143 heat shock protein GrpE; Provisional
Probab=75.39 E-value=7.6 Score=37.98 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=7.3
Q ss_pred hhhHhhhhcCCC
Q 016610 367 GAKLHQLLDASP 378 (386)
Q Consensus 367 ~~kl~qll~~~~ 378 (386)
.+.||+-+..-+
T Consensus 178 DP~~HEAv~~~~ 189 (238)
T PRK14143 178 DPNLHEAVLREP 189 (238)
T ss_pred ChHHhheeeeec
Confidence 467777665443
No 238
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=75.36 E-value=16 Score=31.48 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=29.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
..-||.|+..+-=++.+.+.|+.--+.|+.|...-+++|..|.+++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346777777666666666666666666666666666666665543
No 239
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.17 E-value=4.2 Score=43.21 Aligned_cols=49 Identities=31% Similarity=0.370 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
++|..+|..|.++|..|+.+++.++-.|.-+..||.-|+.--..+|...
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQara 94 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARA 94 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhcc
Confidence 5677789999999999999999999999999999998887776676433
No 240
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.09 E-value=10 Score=38.68 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|..++..|+.++..|+.++..|..++..++.+...|++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444455555555555555544
No 241
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.97 E-value=27 Score=26.07 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|..++..|..+|..|+.+|..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555544
No 242
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=74.96 E-value=11 Score=37.35 Aligned_cols=47 Identities=32% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-.+..+|..+-+.|+.++.+|. .+..+...|+.||..||+.|...+
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33444455555555555544433 334456779999999999888654
No 243
>PF14645 Chibby: Chibby family
Probab=74.78 E-value=13 Score=32.67 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
..|.++...|+.||.-|+-+++.|-.=+.....|...+..+|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455667777777777777777665555555555554443
No 244
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=74.69 E-value=13 Score=37.18 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccccCCCCcchHHHhhhccCCC
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSG 347 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~~~~~~p~~~e~lls~vd~~~ 347 (386)
.-.+.|+.+++.|++||..|+.+++.|+.++.....=...+-..+-.=+|....-++.. ......-..+.+...|...+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~L~g~~V~vV~-~p~a~~~~~~~v~~~L~~AG 110 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGRLTGRSVAVVT-LPGADDEDVDAVRELLEQAG 110 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCEEEEEE-cCCCChHHHHHHHHHHHHCC
Confidence 34577888888888888888888887776655544443333333333233332222221 11111123566666666666
Q ss_pred CCcCcccccccccccCCCchhhHhhhhcC
Q 016610 348 TVDRNMEEGGHLFEKNSNSGAKLHQLLDA 376 (386)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~kl~qll~~ 376 (386)
...-..-.=.+-|- ++....+|.+++..
T Consensus 111 A~v~g~i~lt~~~~-d~~~~~~l~~~~~~ 138 (308)
T PF11382_consen 111 ATVTGRITLTDKFL-DPEQADKLRSLAAQ 138 (308)
T ss_pred CeEEEEEEEchhhc-ChhhHHHHHHHHhh
Confidence 55322211111122 34456777777765
No 245
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.64 E-value=33 Score=31.32 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLID---ENASLKSEINQLSENSE 299 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~---EN~~Lr~el~~L~ee~~ 299 (386)
-+..|.+...+++.|+. .|..|+.+|..|+..+.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444444444444 44445444444444443
No 246
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.58 E-value=29 Score=32.82 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++.++.|+.+++.++.....|...+..|+.++..++..-..|..+....+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777766554
No 247
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=74.38 E-value=1 Score=44.00 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
+..++|+..++..|+.....|..++++|++++.+|.+||..|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777666677777776
No 248
>PRK14158 heat shock protein GrpE; Provisional
Probab=74.33 E-value=15 Score=34.92 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=8.7
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.||+-+..-+.
T Consensus 150 DP~~HEAv~~~~~ 162 (194)
T PRK14158 150 DPAYHQAMCQVES 162 (194)
T ss_pred ChHHhhhheeecC
Confidence 5778888865443
No 249
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=74.26 E-value=27 Score=40.22 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=46.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.-.++.-++++.+-....++..+|..+++.|..+-..+..+.+.....++.|+.|...|..+++.++
T Consensus 448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888877777778888888877777777666666666666666666666666666654
No 250
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=74.11 E-value=50 Score=28.21 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccc--ccCCCCcchHHHhhhc
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNE--DKRVTPVSTENLLSRV 343 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~--~~~~~p~~~e~lls~v 343 (386)
.+.+++.+...+..|..|...+..-++-..++...++.|+.+....+ .....++-.+ .....|.++-++|.++
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~-e~ik~~lk~d~Ca~~~~P~~V~d~L~~~ 108 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERR-ESIKTALKDDPCANTAVPDAVIDSLRRL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccCCCCHHHHHHHHHh
Confidence 45555666666666777777666666666666666666666555432 1222222221 1245666677777665
No 251
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=73.91 E-value=11 Score=31.89 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENA-SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~-~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|-..=+.+|..|+.-.. ....++..|..++..|..||..|+.+|..-
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777764332 366677777778888888888888777653
No 252
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.90 E-value=24 Score=35.94 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-|+++|-....+.++.+++.....=+........+-+.|.+.+.+|.+||--|+++|.+.+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777887777766666666777778889999999999999999999985
No 253
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.79 E-value=14 Score=38.34 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|+.+...|+.++..|..++..|+.++..++.|...|+++|..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445667778888888888888888888888888888888774
No 254
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.61 E-value=25 Score=37.25 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.++.+|+.++..++.+.......+..+++.+
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3344444444444444333333333333333
No 255
>PRK14148 heat shock protein GrpE; Provisional
Probab=73.50 E-value=8.9 Score=36.48 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+++.|+.+...|..++..|+.++.++.+|...+|.++.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444545444444443
No 256
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=73.48 E-value=11 Score=39.06 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=49.9
Q ss_pred CCCCChhhhhhhcCCCCCC--CCCC-CCCCCCCCCCCCCccCCCCCCCCCCCC--CCcc--------ccCCCccccCCCC
Q 016610 27 HMYTDWAAMQAYYGPRVAI--PPYY-NSPIASGHAPQPYMWGPAQPMMPPYGA--PYAA--------IYSTGGVYAHPAV 93 (386)
Q Consensus 27 ~~ypDWs~mQAYygp~~~~--pp~f-~s~vas~~~phPYmWG~~qpmmppyGt--PY~a--------~Yp~GgvYaHP~~ 93 (386)
|.-.|-+.+|.-|-|..++ .||| +++-|-+.-|||--| + --|+|+||. ||++ +-||-++=.||..
T Consensus 72 ~~p~dis~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~w-p-~y~~pt~~~~~p~p~~~~asmsrf~ph~~~p~~p~~ 149 (421)
T KOG3248|consen 72 PLPADISPKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGW-P-VYPIPTFGFRHPYPGVVNASMSRFSPHHVEPGHPGL 149 (421)
T ss_pred CCcccccccCCCCCCCCCccccccccCCccccccCCCccCC-c-cccCCCCCCCCCCchhhhhhhhhcchhccCCCCCCc
Confidence 3446778889666554332 4566 455566778999999 2 446788888 8885 3356666678876
Q ss_pred CCCCCCCCCCCC
Q 016610 94 PLGSHAHNHGVP 105 (386)
Q Consensus 94 p~g~~p~~~~~~ 105 (386)
...-||+..-++
T Consensus 150 ~tagiPhpaiv~ 161 (421)
T KOG3248|consen 150 HTAGIPHPAIVT 161 (421)
T ss_pred cccCCCCccccC
Confidence 666666544333
No 257
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.39 E-value=14 Score=40.84 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=6.1
Q ss_pred hhhhcCCCccccc
Q 016610 371 HQLLDASPRTDAV 383 (386)
Q Consensus 371 ~qll~~~~~~dav 383 (386)
+.||.+.+..+-+
T Consensus 211 q~l~~~~~~~~~~ 223 (632)
T PF14817_consen 211 QSLLESFPAYGSS 223 (632)
T ss_pred HHHhcccccCCCC
Confidence 4455544444433
No 258
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=73.33 E-value=40 Score=34.67 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016610 245 ELKRERRKQSNRESARRSRLRKQAEA 270 (386)
Q Consensus 245 ElKR~RRk~sNRESARRSRlRKqa~l 270 (386)
..+++|+++++|...-..=.||..++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788877666655554433
No 259
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=73.24 E-value=13 Score=31.96 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+|+.+.+-...|...|++.+.+|+.||..|..+|..++
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555666667777777777664
No 260
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=18 Score=33.02 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+.|..+++.|.+....|...+..|.+.+..++.+++.|.++..
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555556666666666666666666666665554
No 261
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.77 E-value=34 Score=38.09 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI 323 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev 323 (386)
|+|.+..-..-+..-.+|..+++++.....+|++.|.+-+.++.+|+.+.++-..+++++.....-++
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 34444333333334456777777888888888888888888888888888877777777755554444
No 262
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.63 E-value=31 Score=40.78 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEEL 273 (386)
Q Consensus 260 RRSRlRKqa~leeL 273 (386)
+..+.+++.++.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444444
No 263
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=72.48 E-value=22 Score=29.57 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+++|...|..|......|...+..++.+......|+.+-+++|.+.
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 556888888999999999999999999999999999999988888764
No 264
>PRK14155 heat shock protein GrpE; Provisional
Probab=72.46 E-value=11 Score=36.10 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=8.1
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.||+-+..-+.
T Consensus 127 DP~~HEAv~~~~~ 139 (208)
T PRK14155 127 DPHLHQAMMEQPS 139 (208)
T ss_pred ChhHhceeeeecC
Confidence 4677777665443
No 265
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.45 E-value=49 Score=33.49 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
++..|..++..+..++...+.++..+++++..+.....
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333
No 266
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.15 E-value=91 Score=30.42 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.+..|+.....++.+..+.++....|..|-..|+.++..++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655555556666666666666666553
No 267
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.09 E-value=64 Score=31.36 Aligned_cols=78 Identities=26% Similarity=0.324 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHHh--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 016610 238 TWIQNERELKRERRKQSN--RESA--RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK-------LRQENA 306 (386)
Q Consensus 238 ~~lqdErElKR~RRk~sN--RESA--RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~-------L~sEN~ 306 (386)
.|..-+.+++..|+.+.. ++-| .--+..=+..++++..+++.....+..|..++..|+..++. |+.+..
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 344456666666665431 1111 11222224455566666665555555555555555555544 444445
Q ss_pred HHHHHHHHh
Q 016610 307 ALLEKLKSA 315 (386)
Q Consensus 307 ~LkeqL~~l 315 (386)
.|+++|.-+
T Consensus 128 ~L~eEl~fl 136 (312)
T PF00038_consen 128 SLKEELEFL 136 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 268
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=72.05 E-value=58 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKV 277 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rV 277 (386)
.....|.+|||....|-=||.|..=..++.+|-+-|
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~li 259 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLI 259 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 344444555666667888888888777777776544
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.93 E-value=46 Score=35.20 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+..|.+-...+..++..|..++..|+.+...|+++|..|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777777777777774
No 270
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.91 E-value=38 Score=32.52 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.+...|..+-..+..+.+.|..+|..|
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444
No 271
>PRK02224 chromosome segregation protein; Provisional
Probab=71.89 E-value=40 Score=37.51 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=5.7
Q ss_pred HHhHHHHHHHHHHH
Q 016610 253 QSNRESARRSRLRK 266 (386)
Q Consensus 253 ~sNRESARRSRlRK 266 (386)
+.+|....|.|..+
T Consensus 625 ~~~~l~~~r~~i~~ 638 (880)
T PRK02224 625 RRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 272
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=71.79 E-value=11 Score=39.75 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK-------------LRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~-------------L~sEN~~LkeqL~~lq 316 (386)
++++++.|++.+.+.|+..|..|..+++.|+.++.. ++..+..+++++..+.
T Consensus 287 q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~~l~ 351 (411)
T KOG1318|consen 287 QTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESDSLE 351 (411)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcchhhh
Confidence 344456777777777777777777777777665543 3444555555555443
No 273
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.56 E-value=37 Score=38.53 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 292 NQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|..+++.++.||..||-+|..+
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 274
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.34 E-value=62 Score=28.91 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 258 SARRSRLRKQAEAEELSRKVDSLIDENASLK-------SEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rVe~Le~EN~~Lr-------~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+-.-|.++..+++.++..+...+.+...|+ .++..|++++..++.+-..++.++..+
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544443 245555555555555544444444443
No 275
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=71.34 E-value=35 Score=30.38 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEI-NQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el-~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+..++...+..|+.++....+.+ ..+.++....+.....+.++|.+|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 556666666776666666655555 344444455555566666666654
No 276
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=71.09 E-value=18 Score=37.22 Aligned_cols=38 Identities=32% Similarity=0.232 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSEN---SEKLRQENAALLEKLK 313 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee---~~~L~sEN~~LkeqL~ 313 (386)
..-.|.+||.+|++|+.+|+.+ ++.++.||..|+..+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555433 3445677887776554
No 277
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=70.99 E-value=38 Score=33.23 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 257 ESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 257 ESARRSRlRKqa~----leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+|+-..-+||.-. -..++.++..|+.++..|..+|+.++.++
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444444454322 23445555555555555555555554444
No 278
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.56 E-value=14 Score=33.76 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 016610 295 SENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 295 ~ee~~~L~sEN~~LkeqL~~lql 317 (386)
.+.+.+|..|...|+.+|.++++
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776554
No 279
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=70.37 E-value=13 Score=37.16 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 247 KRERRKQSNRESARR-SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 247 KR~RRk~sNRESARR-SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|---.-++|||..-. +|.||+.- ..++..|+...- -..+|..|++++..++.||....++|.++-
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l----~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKL----QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHH----HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 333445668876644 44444432 333334443322 234566777777777777777777776653
No 280
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.20 E-value=46 Score=35.46 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.|+.++..|.++..+|..|...|...-+
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k 175 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQK 175 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443444444444333333333
No 281
>PRK14139 heat shock protein GrpE; Provisional
Probab=70.15 E-value=20 Score=33.86 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=7.7
Q ss_pred hhhHhhhhcCCC
Q 016610 367 GAKLHQLLDASP 378 (386)
Q Consensus 367 ~~kl~qll~~~~ 378 (386)
.+.+|+-+..-+
T Consensus 140 DP~~HEAv~~~~ 151 (185)
T PRK14139 140 DPHQHQAISMVP 151 (185)
T ss_pred ChHHhheeeeec
Confidence 467777776544
No 282
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.11 E-value=14 Score=37.73 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
+.+|+.+++.|+..+..|..++..+++++.+++.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44567788889999999999999999999999999988876
No 283
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=69.98 E-value=14 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.....++..|+.||..|+.++..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667788889999999998887754
No 284
>PRK14140 heat shock protein GrpE; Provisional
Probab=69.74 E-value=20 Score=34.02 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=8.9
Q ss_pred hhhHhhhhcCCCcc
Q 016610 367 GAKLHQLLDASPRT 380 (386)
Q Consensus 367 ~~kl~qll~~~~~~ 380 (386)
.+.+|+-+..-+..
T Consensus 147 DP~~HEAv~~~~~~ 160 (191)
T PRK14140 147 DPNLHQAVMQDEDE 160 (191)
T ss_pred ChHHhccceeeCCC
Confidence 46778877655543
No 285
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.60 E-value=22 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
+|+.....-..+|..|...+..|.+++..|
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333
No 286
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.53 E-value=20 Score=36.34 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-+++-|..+++.|+.....|+.++.....+++.+......|+.++..|+
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888777788888888888888888885
No 287
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.53 E-value=29 Score=36.94 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRK-----QAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 251 Rk~sNRESARRSRlRK-----qa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
-+..-|.+|++--+|- ++++.++|..+..|+.||..|..+.-++
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666555543 3455566666666666666666555443
No 288
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.43 E-value=24 Score=29.36 Aligned_cols=49 Identities=33% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENAS----------LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~----------Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
-+.++++|..+...+.++... |..++..|++++..|+.+...+.+++..
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443 3334444444444444444444444443
No 289
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.40 E-value=24 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
++.++..|+..+..+..++..+.+++.++.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 290
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.39 E-value=20 Score=39.60 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 016610 296 ENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 296 ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
..+..|+.||..|+++|..+..+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 45677888999999998777543
No 291
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=69.29 E-value=8.2 Score=34.36 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
|..-+|+|+.++..|+-||..|+++|..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345678899999999999999888877543
No 292
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.26 E-value=35 Score=34.97 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..|..-+...++++..|..|...|+++|.+++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566667777777777777777777764
No 293
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=68.93 E-value=15 Score=34.24 Aligned_cols=6 Identities=17% Similarity=0.672 Sum_probs=2.7
Q ss_pred Hhhhhc
Q 016610 370 LHQLLD 375 (386)
Q Consensus 370 l~qll~ 375 (386)
|..+|+
T Consensus 149 ~~~~~~ 154 (162)
T PF04201_consen 149 FDEVLN 154 (162)
T ss_pred cchhhc
Confidence 444444
No 294
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.88 E-value=40 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
+++.|..-...|+.++....+-..+|+.++..++.
T Consensus 20 EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 20 EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444443
No 295
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.78 E-value=19 Score=32.91 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHhhcc
Q 016610 267 QAEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENA----ALLEKLKSAQLG 318 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~---el~~L~ee~~~L~sEN~----~LkeqL~~lql~ 318 (386)
.++++.|+.++.....+...|+. -+..|+.++..|..+|. .+.++|..++..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~ 84 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKD 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777 67777778888888877 555555555433
No 296
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=68.72 E-value=7.5 Score=34.60 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.|..++.+|+.||..||.+|..-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5677778888899999999999864
No 297
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.60 E-value=42 Score=37.20 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEKL 312 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL 312 (386)
|-....+|+.||-.|.+.+..|++ +++.|+.|+..|.+++
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEET 210 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 334556777888888888777765 4455555555555443
No 298
>PHA03161 hypothetical protein; Provisional
Probab=68.55 E-value=28 Score=32.27 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|.+-|+.+.+|+. .+|+..|..|..+.....+|+..|..-..+-......|..++.+|.
T Consensus 44 ~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLk 102 (150)
T PHA03161 44 KKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELK 102 (150)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 6777777777777777777777776533333444444555555543
No 299
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=68.43 E-value=35 Score=30.39 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
...+|..-..=+-|-++|+.+|..|+-+...++.=|..|..+|++|+-.
T Consensus 13 w~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 13 WHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566677777777777777777777777777776533
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.37 E-value=88 Score=28.39 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+...|+.+.......+..+++++..+..+...|+.++..+
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444443
No 301
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=68.16 E-value=20 Score=29.36 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+...+..++..++.+..+|..||..|+-++..+
T Consensus 35 ~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 35 HQSRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666666666665554
No 302
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.11 E-value=44 Score=31.12 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++.|+..++.+......|+..+..|+.++..++.+-..|+.+....
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666655543
No 303
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=68.10 E-value=32 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
+..|+.+-+.+.-|+-.|++++..+++++..
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777666543
No 304
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=67.98 E-value=30 Score=34.89 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLK 288 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr 288 (386)
+|+.+++.++++...+.
T Consensus 38 ~l~~~~~~~~~~~~~~~ 54 (378)
T TIGR01554 38 ELETDVEKLKEEIKLLE 54 (378)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 305
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=67.67 E-value=4.5 Score=37.72 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.|+.++++|+.++..|+.|. .+++++.
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 35555555555555555555 4554443
No 306
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.66 E-value=58 Score=35.52 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+..|..+++.++.+...+..++..+.+++..+..+...|+.++.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 307
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=67.58 E-value=65 Score=29.90 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=8.7
Q ss_pred cCCCCcchHHHhh
Q 016610 329 KRVTPVSTENLLS 341 (386)
Q Consensus 329 ~~~~p~~~e~lls 341 (386)
....+|.+++||.
T Consensus 76 ~~~~~v~~~eLL~ 88 (188)
T PF10018_consen 76 AEKRPVDYEELLS 88 (188)
T ss_pred cccCCCCHHHHHH
Confidence 3556677887774
No 308
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=67.11 E-value=11 Score=33.31 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 287 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~L 287 (386)
..|..|+.++||.+ .++++++|+.+++.|+.++..+
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444432 2344555555555555554443
No 309
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=67.04 E-value=31 Score=35.28 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.-|++..+++++|+.+.+.|.++|...+..+..|..++..|..--.-|...+.
T Consensus 101 ~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 101 EQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 34677788889999999999999999999999999988888877777777664
No 310
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.03 E-value=29 Score=38.93 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
+.+|+++.+.|+..-..|.++++.+.++.+.|.
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 311
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.79 E-value=52 Score=35.15 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=6.9
Q ss_pred hhHhhhhcCCCcc
Q 016610 368 AKLHQLLDASPRT 380 (386)
Q Consensus 368 ~kl~qll~~~~~~ 380 (386)
-++|+.+++.|++
T Consensus 141 ~r~~s~~ga~~~~ 153 (459)
T KOG0288|consen 141 LRRQSVDGAVPRT 153 (459)
T ss_pred hhhhhhcCCCccc
Confidence 3445555555554
No 312
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=66.78 E-value=74 Score=29.72 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 242 NERELKRERRKQSNRESARRSRLRK-----QAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRK-----qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
-|.++.|.++-++.|..++++|.-. ....++|+.-++-+++|...++++|..+..++
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreL 100 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNREL 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Confidence 3666677777788888888887532 22234455444444555555555555444333
No 313
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.76 E-value=50 Score=37.56 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.+.|.++...+++.+..++..-++|...+..|++++..|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556666666777777777777777778888888888775
No 314
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=66.61 E-value=13 Score=32.98 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.|++++.+..-++++++++.|+.+...|..+++.+++
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555666677778888888887777777766543
No 315
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.60 E-value=52 Score=33.63 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|...|..+|..|+.+|..+..||..|...|..
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444444444444555555555555544443
No 316
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.55 E-value=96 Score=31.25 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..++.+..+++..+.......+++|..+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444
No 317
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.49 E-value=65 Score=33.16 Aligned_cols=17 Identities=47% Similarity=0.644 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEELSRK 276 (386)
Q Consensus 260 RRSRlRKqa~leeLE~r 276 (386)
+|.-.|+|.++++|+..
T Consensus 354 qraeekeq~eaee~~ra 370 (445)
T KOG2891|consen 354 QRAEEKEQKEAEELERA 370 (445)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33344555566666543
No 318
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.48 E-value=26 Score=28.27 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
...+..|+..+..+...+..|..++..+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555555555555554
No 319
>PRK14151 heat shock protein GrpE; Provisional
Probab=66.47 E-value=23 Score=33.06 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=9.6
Q ss_pred hhhHhhhhcCCCcc
Q 016610 367 GAKLHQLLDASPRT 380 (386)
Q Consensus 367 ~~kl~qll~~~~~~ 380 (386)
.+.+|+-+..-+..
T Consensus 131 DP~~HEAv~~~~~~ 144 (176)
T PRK14151 131 NPEHHQAMAMQESA 144 (176)
T ss_pred CHHHhhcceeeCCC
Confidence 47788888765543
No 320
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.41 E-value=58 Score=38.30 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN-~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++..++.|+.++..++++- ..|..++.++..++..|..|+..|..++..|+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666654 66777777777777778888888877777764
No 321
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=66.39 E-value=20 Score=28.35 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
++||+.++..|+.|...++.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766666666666555543
No 322
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.36 E-value=21 Score=39.14 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++++++|+.+++.|..+...+..++..|+.++.++..|....+.++..+
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666555555
No 323
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=66.31 E-value=18 Score=37.09 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..|..+|+.|+.....|..++..+.+....++.++..|.++|.+++
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888774
No 324
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.29 E-value=22 Score=32.56 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 016610 279 SLIDENASLKSEI 291 (386)
Q Consensus 279 ~Le~EN~~Lr~el 291 (386)
.++....+|+.++
T Consensus 55 ~~~a~~~eLr~el 67 (177)
T PF07798_consen 55 LFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 325
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.14 E-value=62 Score=28.99 Aligned_cols=48 Identities=10% Similarity=0.291 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++++.|..++++..+-....++++..++..+..+..+...+...+..|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444444444444433
No 326
>PHA03162 hypothetical protein; Provisional
Probab=66.04 E-value=4.4 Score=36.75 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
+++.-+|+|+.++..|+-||..|+++|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999884
No 327
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.02 E-value=12 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++|-|..++.+|+..|..|++|...|+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666665544
No 328
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.85 E-value=54 Score=37.35 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|.+++..+++++..++.+-..|+..+..|
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444444444444444444444444444
No 329
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.68 E-value=80 Score=34.06 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+++.++.++..+..++..+..++..|+.++
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444443
No 330
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.61 E-value=60 Score=39.46 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=5.8
Q ss_pred HHHHhHHHHHHHH
Q 016610 251 RKQSNRESARRSR 263 (386)
Q Consensus 251 Rk~sNRESARRSR 263 (386)
...+.++.|++.+
T Consensus 325 kLEkQaEkA~kyl 337 (1486)
T PRK04863 325 DLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445554443
No 331
>PF15556 Zwint: ZW10 interactor
Probab=65.60 E-value=89 Score=30.74 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+-+++..+.|.-.+++.-.-+..+..|..-..+++.+....+++++.|..|...|+.+...-+
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888899999999999999999999999999999999998887654
No 332
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=65.53 E-value=20 Score=37.29 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
+.-.|+++-..|++||+.|+.|+++|+.+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666667777777777777777755444
No 333
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=65.52 E-value=41 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=11.0
Q ss_pred CCCCcchHHHhhhccCC
Q 016610 330 RVTPVSTENLLSRVNNS 346 (386)
Q Consensus 330 ~~~p~~~e~lls~vd~~ 346 (386)
++|.| +.-||++.|+.
T Consensus 191 ~VCeV-CGA~Ls~~D~d 206 (254)
T PF03194_consen 191 EVCEV-CGAFLSVGDND 206 (254)
T ss_pred cchhh-hhhHHhccchH
Confidence 44554 77888888874
No 334
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.46 E-value=23 Score=34.17 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~ 292 (386)
.+|.++.+.|++||..|+.++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333
No 335
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=65.27 E-value=47 Score=33.29 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
..+.-|+-|.+-|..=|.+++||+++-.+-.-...-|+.++..|-++|.+
T Consensus 41 eLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 41 ELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 34555666777777777777777777776666667788888777666543
No 336
>PRK14163 heat shock protein GrpE; Provisional
Probab=65.21 E-value=24 Score=34.17 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=7.1
Q ss_pred hhhHhhhhcCC
Q 016610 367 GAKLHQLLDAS 377 (386)
Q Consensus 367 ~~kl~qll~~~ 377 (386)
.+.||+-+..-
T Consensus 143 DP~~HEAv~~~ 153 (214)
T PRK14163 143 DPTIHEALMHS 153 (214)
T ss_pred ChhHhceeeee
Confidence 46778777543
No 337
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=65.21 E-value=2.1 Score=47.06 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 016610 240 IQNERELKRERRKQSNRESARRSR-LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK---LRQENAALLEKLKSA 315 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARRSR-lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~---L~sEN~~LkeqL~~l 315 (386)
+.||-+.=|.+.-.-.|-.+.-.+ ++|-+.+++|..+|+.|+.+|..|...+..|.+++.+ ++.++..|+.+|.++
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456655555554444443332222 3466788999999999999998888877777665544 444445555555544
No 338
>PRK10698 phage shock protein PspA; Provisional
Probab=65.20 E-value=89 Score=29.96 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.+..|+.+++.++.....|...+..|+.++..++..-..|..+....+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777777777776653
No 339
>PRK14141 heat shock protein GrpE; Provisional
Probab=65.19 E-value=22 Score=34.26 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=8.4
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.||+-+..-+.
T Consensus 147 DP~~HEAv~~~~~ 159 (209)
T PRK14141 147 DPNFHQAMFEVPN 159 (209)
T ss_pred ChHHhceeeeecC
Confidence 4677887765444
No 340
>PRK14147 heat shock protein GrpE; Provisional
Probab=65.12 E-value=24 Score=32.79 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=8.2
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.+|+-+..-+.
T Consensus 126 DP~~HeAv~~~~~ 138 (172)
T PRK14147 126 NPEHHQAISQGEA 138 (172)
T ss_pred ChHHhceeeeecC
Confidence 4677877765443
No 341
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.10 E-value=21 Score=29.00 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
|+.+...|..++..|+.+...+..+...|+..|.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 342
>PHA03162 hypothetical protein; Provisional
Probab=65.01 E-value=8.7 Score=34.89 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.|..++.+|+.||..||.+|..-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777888889999999998753
No 343
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.94 E-value=34 Score=32.12 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.++++++|++--..|+.........+..|...+.+|..+-..|+.+|.
T Consensus 72 EqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 72 EQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566644444444444444444444444444444444444444443
No 344
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=64.90 E-value=39 Score=31.94 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
.+|++++++-+.+.+.++.+..+|+.+|...+
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555554443
No 345
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.70 E-value=48 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 294 LSENSEKLRQENAALLEKL 312 (386)
Q Consensus 294 L~ee~~~L~sEN~~LkeqL 312 (386)
|++++..|+.+...|.+++
T Consensus 78 l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 78 LKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 346
>PHA03155 hypothetical protein; Provisional
Probab=64.61 E-value=8.5 Score=34.11 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
-+|+|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999988854
No 347
>PHA03155 hypothetical protein; Provisional
Probab=64.43 E-value=8.7 Score=34.05 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++.|..++.+|+.||..||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777788899999988875
No 348
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.35 E-value=1.1e+02 Score=29.66 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
...|+..+..++.+...+...+..|+..+..|+.....|+.++..+
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666665555555555554
No 349
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=64.24 E-value=78 Score=26.78 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|...-.||..|+.++.+|+.-+ ...|-..|.++|..|+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 4456668888888888887655 4445566666666654
No 350
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=64.22 E-value=24 Score=32.10 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 293 QLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+|++++++|+.|.+.|++.+.
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 351
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.20 E-value=49 Score=28.87 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.+..++++++.|.-.|..|.++++.|+.++
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 352
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=64.15 E-value=69 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
...++.++.....++.+......|..-=.+..+++...+.||..|+..|..=
T Consensus 10 ~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 10 DQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 3334444444444554444444444444456677888899999999999864
No 353
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.09 E-value=54 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-..|..++..|+++++.|+.+...||+++.+-
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577777888888888888888888877764
No 354
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=64.02 E-value=60 Score=27.26 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+..++..|...+..+..+|..|.++|..++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888999999999999999999998765
No 355
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=63.70 E-value=23 Score=33.40 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
=.|.+++.|+++|..|+.+++.|.
T Consensus 44 L~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 44 LVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555443
No 356
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=63.69 E-value=41 Score=30.07 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.=-..++.+|+.++..|..|-..=.+.++.|-.+.+.|+.++..|.+-|.-|
T Consensus 10 E~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 10 EIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3344567778888888877776666677777777777777888887777766
No 357
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.60 E-value=37 Score=28.24 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=19.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 258 SARRSRLRKQ----AEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 258 SARRSRlRKq----a~leeLE~rVe~Le~EN~~Lr~el 291 (386)
+-++-|.||. .+++.|..++..|..+|..|+.++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455553 355566666666666666666554
No 358
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=63.44 E-value=62 Score=26.92 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
-.+|..++..-+.|+..|..-+..|+.++.+...-|..|..++..++.
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777777777777777777777777777777654
No 359
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.38 E-value=39 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 283 ENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sE 304 (386)
|+..|..++..+.++...+..+
T Consensus 81 ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 81 EIERLHRKLDALREKLGELLER 102 (108)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555554444433333
No 360
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=63.38 E-value=1.1e+02 Score=27.35 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=45.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---------ENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~---------ee~~~L~sEN~~LkeqL~~ 314 (386)
+--++-|.|.||-.++|.++ +.++.++..|......+...+..|. .++..|..+...++.+|..
T Consensus 35 e~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 35 EYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455578888888777766 5778888888777777777777664 4667777777777666664
No 361
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.14 E-value=56 Score=40.74 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=51.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.-.+.+++++.-=++.+..++.|++.|++|+.+|+..+..+.+.-..++.|...+.++|..+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3346778888888888888888888888888888888888888887777777777777777765
No 362
>PHA02109 hypothetical protein
Probab=63.06 E-value=21 Score=34.29 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.+++-+|+.+++.|..|-.+|+.++..+++++
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444444444444444433
No 363
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.04 E-value=1.1e+02 Score=31.14 Aligned_cols=7 Identities=71% Similarity=0.909 Sum_probs=2.7
Q ss_pred chHHHHH
Q 016610 242 NERELKR 248 (386)
Q Consensus 242 dErElKR 248 (386)
+|.+.|+
T Consensus 9 ~E~e~K~ 15 (294)
T COG1340 9 DELELKR 15 (294)
T ss_pred hHHHHHH
Confidence 3333333
No 364
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=62.96 E-value=29 Score=36.94 Aligned_cols=63 Identities=25% Similarity=0.264 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 254 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN----------QLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 254 sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~----------~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++|+-|.-|-+-+-..+-+++.+++.|+.+...|++-|. +|++++...+.+..+|+++...|+
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls 471 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALS 471 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455655555554555666777777777777666665554 455666666666666666666654
No 365
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=62.90 E-value=29 Score=28.05 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN 305 (386)
.|..++++|+..|..|...++..+.+++.|....
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~l 35 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDL 35 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555554433
No 366
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.78 E-value=48 Score=37.05 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
+..|.+++..|+++...|..++..+.+++..+..++..|..+|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 285 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL 285 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444444444444333333333
No 367
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=62.65 E-value=35 Score=31.78 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSE-KLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~-~L~sEN~~LkeqL~~l 315 (386)
+.++++|+.+++.|......+.+++..++.++. .++.+...|.+++.++
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el 127 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNEL 127 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888887777777766553 3444555666666554
No 368
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.52 E-value=86 Score=27.51 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
-+..|+.-|++. +-++.++++|..++..+-.+-..|..++..+..++..+
T Consensus 39 l~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 39 LLAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666544 22345555555555555555555555555555555554
No 369
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=62.50 E-value=1e+02 Score=26.67 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|..+++.+..+++.|..+|..|++++..|+
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444444444444444444443
No 370
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.35 E-value=90 Score=35.15 Aligned_cols=46 Identities=28% Similarity=0.451 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++|+.+|..|+.+-.....++..|+++.+.|+.....|.++++.+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555443
No 371
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=62.29 E-value=46 Score=33.41 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.+..|++++..++.++.....+|..++++.
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 678888888888888888888888777654
No 372
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=62.25 E-value=18 Score=31.00 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+..++.+|++++.+|+.||..|+.-+.-.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555666666777777666543
No 373
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.12 E-value=17 Score=31.86 Aligned_cols=41 Identities=37% Similarity=0.464 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
+.-|.-+++|.+||+..+.||-.|+.|.+-|-+-++.|.+-
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 45677899999999999999999999999998877666544
No 374
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=62.01 E-value=42 Score=31.84 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+...++.++..++.++..++.+...++.++..+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 103 DLDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334444555555555555555556666655554
No 375
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=61.97 E-value=1.3e+02 Score=27.95 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE-INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~e-l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+|+.+...+-+.|.+.+..=.+...+.+.++..-+.+-..++.+ ...|..+ ...+...|.++|..
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~---~~~~~~~~ea~L~~ 106 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESE---FLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45667777778888877776666677777777666666666665 4444332 23333444444444
No 376
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=61.76 E-value=16 Score=39.31 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|..++..|.+.|..|...+.. .+.|...|+++|..|
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKA-------ARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 34555555555555555555544 455555566666655
No 377
>PRK14153 heat shock protein GrpE; Provisional
Probab=61.70 E-value=27 Score=33.26 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=7.2
Q ss_pred hhhHhhhhcCCC
Q 016610 367 GAKLHQLLDASP 378 (386)
Q Consensus 367 ~~kl~qll~~~~ 378 (386)
.+.+|+-+..-+
T Consensus 143 DP~~HEAv~~~~ 154 (194)
T PRK14153 143 DPHRHEAMMHVE 154 (194)
T ss_pred ChhHhceeeeeC
Confidence 466677665544
No 378
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=61.69 E-value=40 Score=29.39 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
|+.+++.|+.....|...+..++++++.+......
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333333
No 379
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.55 E-value=37 Score=28.44 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|+.....|..++..|..++..+..+...|+.+|.+++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555666666666666666666666553
No 380
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=61.49 E-value=37 Score=36.59 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+.+..++..|+....+++.++..+.-++..|..+-+.|+.+|.
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444
No 381
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.44 E-value=96 Score=28.75 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSE 290 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~e 290 (386)
.|+||..-.+-+.+++++..+|...-.+...|..+
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776665554444444433
No 382
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=61.44 E-value=67 Score=34.30 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 258 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
.|++--.+-++++..|..+...|..+...|..+..+|..+...|..+-..|.
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666666666666666666666655555555555554
No 383
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.26 E-value=1.1e+02 Score=27.55 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+...||.+..|...--.++-++.++.+ ..+.+..+++..+..+...+..+..--..|..+|..+
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~------~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISK------QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555544444433333322 2223333344444444444444444444444444443
No 384
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=61.20 E-value=42 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.++...-.-|..|...-..|+++|+.|+.-+..|...|.+
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466677778888888888888888888888888877753
No 385
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=61.19 E-value=28 Score=29.71 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|-..+..+.+++..|+.++..++.+...+...|..|-.++..+
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 386
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.17 E-value=46 Score=29.24 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
++....+-.+=.+....++.+++.++.+...+..++..|..++..+..+
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333444444444444444444444444444444433
No 387
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=61.12 E-value=68 Score=35.84 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCC
Q 016610 96 GSHAHNHGVPTSPA 109 (386)
Q Consensus 96 g~~p~~~~~~~sp~ 109 (386)
|..=|+...|++..
T Consensus 445 GaRCYGfVTMSts~ 458 (940)
T KOG4661|consen 445 GARCYGFVTMSTSA 458 (940)
T ss_pred CcceeEEEEecchH
Confidence 44445555555543
No 388
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=60.97 E-value=65 Score=25.22 Aligned_cols=36 Identities=31% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|++=|..|..+.. |.+++..|+.||..|+.-|+.
T Consensus 23 ~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666544 446678899999999988764
No 389
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.91 E-value=45 Score=29.09 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|..+++.+..++..|+.+...|+.++.++
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554
No 390
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.91 E-value=39 Score=38.42 Aligned_cols=37 Identities=35% Similarity=0.486 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+++-+-.+++..|..+++.+++||..|+-++..|.++
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ke 163 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKE 163 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677899999999999999999999877653
No 391
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=60.83 E-value=1e+02 Score=26.76 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQA--------EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa--------~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.+...+.+|++-.+..+-..-...-. ....|..+++.++++|..|..+...|..++..|..+
T Consensus 17 ~~~~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 17 GERRVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445556666666666554443332 233444555555555555555555555555555555
No 392
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.81 E-value=56 Score=38.73 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
....|+.+++.|..++..|..++..+.+++..|..+...+..++.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344555555555555555555555555444444444444444443
No 393
>PF14282 FlxA: FlxA-like protein
Probab=60.80 E-value=40 Score=28.77 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016610 268 AEAEELSRKVDSLIDENASLKS----EINQLSENSEKLRQENAALLEKLKSAQLGNKQE 322 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~----el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~E 322 (386)
..++.|+.++..|..+...|.. -.....++...|..+...|..+|..++.....+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776 224556666777777777777777775444333
No 394
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.75 E-value=1e+02 Score=31.08 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE-----------------------------N 297 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e-----------------------------e 297 (386)
|+.--.++.++..+.-+.|-..-.+.||.-+..|..+|..|..+...+.. .
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~ 129 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSER 129 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016610 298 SEKLRQENAALLEKLKSA 315 (386)
Q Consensus 298 ~~~L~sEN~~LkeqL~~l 315 (386)
..++..||..|+++|+.+
T Consensus 130 ~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 130 NIKLREENEELREKLKSL 147 (309)
T ss_pred hHHHHHHHHHHHHHHHHH
No 395
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.60 E-value=38 Score=36.28 Aligned_cols=50 Identities=10% Similarity=0.237 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-.|.+.|+.+.+.-...-..|+.-+.-+..++..|...|..-.++|.+|+
T Consensus 133 ~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 133 GQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred cchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555555555555444444554444444555555555544444555443
No 396
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.50 E-value=62 Score=25.20 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016610 295 SENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 295 ~ee~~~L~sEN~~LkeqL~~l 315 (386)
++++..+..+...|.+.|..|
T Consensus 45 r~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666554
No 397
>PRK14144 heat shock protein GrpE; Provisional
Probab=60.39 E-value=36 Score=32.61 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=8.3
Q ss_pred hhhHhhhhcCCCc
Q 016610 367 GAKLHQLLDASPR 379 (386)
Q Consensus 367 ~~kl~qll~~~~~ 379 (386)
.+.+|+-+..-+.
T Consensus 154 DP~~HEAv~~~~~ 166 (199)
T PRK14144 154 DPQQHEAMSMQPA 166 (199)
T ss_pred ChhHhceeeeeCC
Confidence 4677887765443
No 398
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=60.34 E-value=52 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.+++|..+|..|......|..++..++........|-..=.++|.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5667777777777777777777777777666666665555555554
No 399
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.23 E-value=92 Score=30.08 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.+.|....++.++|+.+...|+.+...|+.++..+++
T Consensus 108 K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 108 KAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444444444433
No 400
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.87 E-value=24 Score=35.68 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 253 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+=|.|+-+.+ =+.+++.|..+|..|+..|.+|++++...++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455555443 45678888888999988888888888888877776654
No 401
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.78 E-value=50 Score=33.49 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
+|+=-||.+.+....|-..|+.++..|+.+...++.+.+..|+.|.-|+...
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444566666666666666777777777666666666666666666665433
No 402
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.75 E-value=76 Score=30.03 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 300 KLRQENAALLEKLKS 314 (386)
Q Consensus 300 ~L~sEN~~LkeqL~~ 314 (386)
+++.+...|+++|+.
T Consensus 157 e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 157 ELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445555444
No 403
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.52 E-value=60 Score=33.81 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|......|.+++.+|..+...|+++|..
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444443
No 404
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=59.49 E-value=90 Score=31.19 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
..=+.-..+-..++..|+.+|+.|.++......++..|..
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566667888888888888888888888888764
No 405
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=59.43 E-value=48 Score=33.39 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+..|+.....|..++..|..++..|+....+|++++.
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333333333333
No 406
>PRK10963 hypothetical protein; Provisional
Probab=59.19 E-value=28 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=15.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLI---DENASLKSEINQLSENS 298 (386)
Q Consensus 271 eeLE~rVe~Le---~EN~~Lr~el~~L~ee~ 298 (386)
.+|+.++..|- .+|..+-.++.+|..++
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 36666666666665544
No 407
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=59.18 E-value=19 Score=29.90 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 278 DSLIDENASLKSEINQLS 295 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ 295 (386)
.+|.+||..|+.+|..|.
T Consensus 3 ~ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 408
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=59.04 E-value=21 Score=31.36 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee 297 (386)
..+|++||.-|+-+++.|-.-
T Consensus 81 ~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777887777777776443
No 409
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=58.93 E-value=60 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 292 NQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..-+.+...++..|..|..+|.+.+
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777877777753
No 410
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.79 E-value=48 Score=31.73 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el--~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
++.+..|++.+...++|...|.+-| ..+++++.+|..|....+++|.++..+.
T Consensus 92 ~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 92 TEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666666666665543 4678888888888888999999886544
No 411
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=58.69 E-value=40 Score=27.56 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN 305 (386)
|...|+.|..|+..|..++..+.+++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776666666655554
No 412
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=58.55 E-value=30 Score=33.34 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+|..++..++.|+..|++=|..-+++|.+|..
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544443
No 413
>PLN02678 seryl-tRNA synthetase
Probab=58.55 E-value=57 Score=34.74 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+..|++++..|+.+...|.++|.
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333
No 414
>PRK01156 chromosome segregation protein; Provisional
Probab=58.53 E-value=88 Score=35.13 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.5
Q ss_pred HHhhhc
Q 016610 338 NLLSRV 343 (386)
Q Consensus 338 ~lls~v 343 (386)
+++..+
T Consensus 768 e~~~~~ 773 (895)
T PRK01156 768 KYLFEF 773 (895)
T ss_pred HHHHHh
Confidence 344444
No 415
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.51 E-value=95 Score=36.58 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENA 285 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~ 285 (386)
...|++|+.+++.|+.+..
T Consensus 447 ~~~ieele~el~~~~~~l~ 465 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLK 465 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 416
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=58.38 E-value=37 Score=38.57 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
||..++..|..+++.+...+..++..|..|+..+...+.++..|...+..|+
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 417
>PRK14145 heat shock protein GrpE; Provisional
Probab=58.27 E-value=53 Score=31.41 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=6.9
Q ss_pred hhhHhhhhcCCC
Q 016610 367 GAKLHQLLDASP 378 (386)
Q Consensus 367 ~~kl~qll~~~~ 378 (386)
.+.+|+-+..-+
T Consensus 152 DP~~HEAv~~~~ 163 (196)
T PRK14145 152 DPYKHHAVMQEE 163 (196)
T ss_pred CchhhheeeeeC
Confidence 356676665544
No 418
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=58.20 E-value=14 Score=35.23 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|+.++..|+.++..|..|+..|+.++..+
T Consensus 115 ~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 115 ESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444454444443
No 419
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.15 E-value=28 Score=35.13 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|..-.+-++.+++.+.+++.++.+...|..++..|+.+++....|...|..++...+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.12 E-value=37 Score=37.17 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+++.+..+...+..||..|..+|..++++...+..|+..|.+.|..
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666666666666666666666666555543
No 421
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.08 E-value=44 Score=32.82 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 259 ARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
.-+.|.-+|..++.+.+-+..++.+...|..++..|..+++.. |..||.++...+.
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~ 209 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3344556666666666666666666666777777776665555 5557776666543
No 422
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=57.86 E-value=1.3e+02 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=15.8
Q ss_pred cccCCCCcchHHHhhhccCCCC
Q 016610 327 EDKRVTPVSTENLLSRVNNSGT 348 (386)
Q Consensus 327 ~~~~~~p~~~e~lls~vd~~~~ 348 (386)
...++.|.+-|+|..+|=++.-
T Consensus 409 np~pidp~~leefkrrilesqr 430 (442)
T PF06637_consen 409 NPPPIDPASLEEFKRRILESQR 430 (442)
T ss_pred CCCCCChHHHHHHHHHHHhccC
Confidence 3346777888999988876643
No 423
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=57.75 E-value=75 Score=25.12 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++++++..++.+...+..++..|......++.+-..|..+|.++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555554
No 424
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.68 E-value=52 Score=33.48 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.0
Q ss_pred CCCCcchHHHhhhcc
Q 016610 330 RVTPVSTENLLSRVN 344 (386)
Q Consensus 330 ~~~p~~~e~lls~vd 344 (386)
.+.-.+-|.||..+.
T Consensus 155 NiQN~KLEsLLqsME 169 (305)
T PF15290_consen 155 NIQNKKLESLLQSME 169 (305)
T ss_pred hhhHhHHHHHHHHHH
Confidence 445556888887655
No 425
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=57.64 E-value=23 Score=35.38 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|+.++..++.++..++.|...|+++|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 10 KLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444555555666666553
No 426
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=57.60 E-value=1.2e+02 Score=32.58 Aligned_cols=66 Identities=26% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSR-----KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~-----rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++-+-=+-|.+-+..-+++++.|++ ..++|..|-..|..+-.+|-+++..|+.++..|-..|..++
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555666666677777764 34456666666666666666677777777776666666653
No 427
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.49 E-value=1.6e+02 Score=30.15 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 251 RKQSNRESARRSRLR-KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 251 Rk~sNRESARRSRlR-Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..+.+..++-++.++ +-+.+-+|-.++..|..+-..+-.++..|+.+-..+-...+.|+..+..+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 23444555555555555555555555555554444444444444444443
No 428
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=57.48 E-value=1e+02 Score=31.89 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=34.1
Q ss_pred HHHHh--HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSN--RESARRSRLRK------QAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 251 Rk~sN--RESARRSRlRK------qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
|+++| +|=||-+-.|. +.+-+.+|.++..|+.+|.-+.+|-..|..++.+
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444 56666554443 4556778888888888888888888877765544
No 429
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.40 E-value=55 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
..|+.+++.|+.+...|..++..+..++..|+.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 430
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=57.36 E-value=99 Score=29.69 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+..|+.|-..|+..+..-+.+...++.|+..+..+|.+
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888888888888888888888777776
No 431
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=57.35 E-value=30 Score=38.40 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+++|.-+-+.|+-||...+.--..|++++.+|+.|...+|+++...
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555566666666666666666665554
No 432
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.34 E-value=37 Score=33.07 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK-LK 313 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq-L~ 313 (386)
-+..||.-+..++.+....+..+.++.++|..|..+...+|.. |.
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566777777777777777777777777777777777777666 44
No 433
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.34 E-value=42 Score=28.31 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
..|+.|..-++.|++.|..|..++..|-+.+.+.+.|-++
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888888777777766433
No 434
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.30 E-value=88 Score=38.88 Aligned_cols=73 Identities=30% Similarity=0.343 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 243 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 243 ErElKR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++++.+.|+++.+ +.=.|+.+.-+...+..+..+|++|..++..+...+..++..+..|+.+...|..+|+..
T Consensus 811 ~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 811 ERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777666 444566666677778888888888888888888888888888888888888888888765
No 435
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.02 E-value=50 Score=28.46 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|..++.-.+.|-.-|++.+..|..+.+.|..|.+.++.+...+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666666667777777777777777777777777777766544
No 436
>PRK06835 DNA replication protein DnaC; Validated
Probab=56.88 E-value=96 Score=31.43 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016610 295 SENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 295 ~ee~~~L~sEN~~LkeqL~~l 315 (386)
...+..|+.++..|+++...|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554
No 437
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.71 E-value=54 Score=27.81 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|..++..+...+..|..+-..|+.++.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334443333
No 438
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=56.66 E-value=32 Score=36.29 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCCccCC
Q 016610 46 PPYYNSPIASGHAPQPYMWGP 66 (386)
Q Consensus 46 pp~f~s~vas~~~phPYmWG~ 66 (386)
|+||........++.|++|+.
T Consensus 398 p~~~~~~~~~~~~~~p~~~~~ 418 (562)
T TIGR01628 398 PPYYGQGPQQQFNGQPLGWPR 418 (562)
T ss_pred CCccCCCCcccCCCCCCCCCC
Confidence 344433332223445677764
No 439
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.65 E-value=65 Score=36.41 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++.|+.+...|+.|..+++.+=.+|-+.|..|+.||-.|..++..|+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666667788999999999999999985
No 440
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=56.61 E-value=1.2e+02 Score=34.12 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHh
Q 016610 303 QENAALLEKLKSA 315 (386)
Q Consensus 303 sEN~~LkeqL~~l 315 (386)
.+++.|..+|.+|
T Consensus 300 ~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 300 EERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666666665
No 441
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.60 E-value=49 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
..+++++..|..|...|..++...+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 442
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.55 E-value=79 Score=35.71 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Q 016610 253 QSNRESARRSRLRKQAE-----AEELSRKVDSLIDENASLKSEIN----------------------------QLSENSE 299 (386)
Q Consensus 253 ~sNRESARRSRlRKqa~-----leeLE~rVe~Le~EN~~Lr~el~----------------------------~L~ee~~ 299 (386)
+-+|...--.+.|+... ++....+.+.|+.||..|+..+. ..+..+.
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 016610 300 KLRQENAALLEKLKSAQLGNKQ 321 (386)
Q Consensus 300 ~L~sEN~~LkeqL~~lql~~~~ 321 (386)
.|++||+.||+.+..+......
T Consensus 563 ~LqaE~~~lk~~l~~le~~~~~ 584 (716)
T KOG4593|consen 563 ELQAELERLKERLTALEGDKMQ 584 (716)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
No 443
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=56.36 E-value=1.3e+02 Score=30.78 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
....++..|++||..|..++..-++..+.|+.|..+++.+|...
T Consensus 60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA 103 (305)
T PF14915_consen 60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA 103 (305)
T ss_pred HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777888888777777764
No 444
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=56.24 E-value=74 Score=34.73 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..++.+...+.+++..|.++.++|++|.+.|++++..++
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556677777777888888888888888888877665
No 445
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.17 E-value=1.5e+02 Score=27.67 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++.++..|+.....+...+..|+..+..|+.....|+.+...+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555554
No 446
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.17 E-value=85 Score=33.81 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.-+.|++.++..+..|++.|+.||..++ ++.|.++...|+.....|+.....+
T Consensus 278 ~Ee~rrhrEil~k~eReasle~Enlqmr--~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 278 SEEERRHREILIKKEREASLEKENLQMR--DQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666654433 4444444444444444444444433
No 447
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.15 E-value=79 Score=30.23 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.+.++..++.+......++..+..++..|+.+...+...|+.+
T Consensus 116 ~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 116 EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444444443
No 448
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=55.69 E-value=11 Score=33.43 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=8.5
Q ss_pred hhhHhhhhcCCCccc
Q 016610 367 GAKLHQLLDASPRTD 381 (386)
Q Consensus 367 ~~kl~qll~~~~~~d 381 (386)
.+.+|+.+++-+..|
T Consensus 121 Dp~~heav~~~~~~~ 135 (165)
T PF01025_consen 121 DPNLHEAVETVPDPD 135 (165)
T ss_dssp -TTTEEEEEEECSSS
T ss_pred CHHHheeheecCcCC
Confidence 456677766655544
No 449
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=55.40 E-value=69 Score=33.44 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccccchh--hcccccC
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSE----INQLSENSEKLRQENAALLEKLKSAQLGNKQEI--VLNEDKR 330 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~e----l~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev--~~~~~~~ 330 (386)
...-+.|+.-+.++++|..+-..+.++...+... .+.|.++..+|..+...|.+++..++......+ +++-...
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~ 112 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHE 112 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q ss_pred CCCcchHH
Q 016610 331 VTPVSTEN 338 (386)
Q Consensus 331 ~~p~~~e~ 338 (386)
..|+..++
T Consensus 113 ~vP~g~~~ 120 (418)
T TIGR00414 113 SVPVGKDE 120 (418)
T ss_pred cCCCCCCc
No 450
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.39 E-value=59 Score=35.89 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 016610 250 RRKQSNRESARRSRLR--------KQAEAEELSRKVDSLIDENASLKSEINQL---SENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 250 RRk~sNRESARRSRlR--------Kqa~leeLE~rVe~Le~EN~~Lr~el~~L---~ee~~~L~sEN~~LkeqL~~l 315 (386)
-+|..+=+++-.++.+ .+.++++-|.+++.|+.+|..|+..|..- -++++++..|+..|...|.++
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555433 23445555555555555555555544311 123344455555555555444
No 451
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=55.37 E-value=1.9e+02 Score=27.51 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEEL 273 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeL 273 (386)
|+.+-..|+++.|=+.=|-..+.+|..++..
T Consensus 77 EKQLeyMRkmv~~ae~er~~~le~q~~l~~e 107 (178)
T PF14073_consen 77 EKQLEYMRKMVESAEKERNAVLEQQVSLQRE 107 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777788888888777777766666554444
No 452
>PRK14157 heat shock protein GrpE; Provisional
Probab=55.24 E-value=46 Score=32.59 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=7.4
Q ss_pred hhhHhhhhcCCC
Q 016610 367 GAKLHQLLDASP 378 (386)
Q Consensus 367 ~~kl~qll~~~~ 378 (386)
.+.||+-+..-+
T Consensus 180 DP~~HEAV~~~~ 191 (227)
T PRK14157 180 DPTKHDAILHKP 191 (227)
T ss_pred Chhhhceeeeec
Confidence 467787765433
No 453
>PRK14160 heat shock protein GrpE; Provisional
Probab=55.00 E-value=34 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
++.|+.+++.|+.+...|+.++.++..+++-
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN 93 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDN 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 454
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.93 E-value=1e+02 Score=36.79 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.+++..+.+|+..+..++.|..+..+++..++.+...|......|++++.+
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444
No 455
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.91 E-value=1.2e+02 Score=29.44 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|..+...+..++..|.+.......|...|+.+|...+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555666666666666554
No 456
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.85 E-value=4 Score=44.85 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|..++..|..+...|..|-..|++.+..|
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333444433333
No 457
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.78 E-value=58 Score=32.37 Aligned_cols=9 Identities=11% Similarity=-0.293 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 016610 305 NAALLEKLK 313 (386)
Q Consensus 305 N~~LkeqL~ 313 (386)
...|+.-+.
T Consensus 98 l~~l~~~aG 106 (247)
T COG3879 98 LEKLRMLAG 106 (247)
T ss_pred HHHHHHHhc
Confidence 333444443
No 458
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.77 E-value=1.3e+02 Score=25.39 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016610 298 SEKLRQENAALLEKLKSA 315 (386)
Q Consensus 298 ~~~L~sEN~~LkeqL~~l 315 (386)
+..|..+...|+.++..+
T Consensus 83 i~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 459
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=82 Score=35.59 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
.=+.++..-=|.+++..+.++++++.....+..++..++.....|+.|+..|+-+|..++...
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334556666677888888888888888899999999999999999999999999998876443
No 460
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.47 E-value=58 Score=33.61 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQ---LSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~---L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++++.|+++++.|+.+...|..+++. .+.++..|..+...|..+|.++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666654322 2223444444445555555444
No 461
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.41 E-value=61 Score=33.77 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDE------NASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~E------N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.++++|+..+..|+.. ....+..+..|.+.+..|..+...|++++..|+
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555442 234566777788888888888888888888774
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.34 E-value=1.4e+02 Score=33.80 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016610 273 LSRKVDSL 280 (386)
Q Consensus 273 LE~rVe~L 280 (386)
|+.+.+.|
T Consensus 548 l~~~~~~l 555 (771)
T TIGR01069 548 LEQEMEEL 555 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 463
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=54.20 E-value=63 Score=35.24 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
++++.||.+++.|+.+..+|..++.
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555677777777777666665553
No 464
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=54.13 E-value=68 Score=36.28 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcc-cccCCCCcchHHHhhhcc
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN-EDKRVTPVSTENLLSRVN 344 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~-~~~~~~p~~~e~lls~vd 344 (386)
.-...++.|..+|..|.+++..-..++..+......|..++.+++-.-.++...+ ++-..-..+.++|+.-|+
T Consensus 605 nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~Eve 678 (786)
T PF05483_consen 605 NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVE 678 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344445566666666666666666666666666666666666543322222222 111111224566665554
No 465
>PRK11239 hypothetical protein; Provisional
Probab=53.96 E-value=21 Score=34.80 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++|+.+|..|++|...|+.++..|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665544
No 466
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.81 E-value=1e+02 Score=36.49 Aligned_cols=67 Identities=24% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+-.+.||+=-..--+++-..++++-.+.-.|+.++..|..+++.|.+++.++...+..|...-++|
T Consensus 375 lkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 375 LKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667776666667777777887778778888877777777777777777776666666665555
No 467
>PLN02320 seryl-tRNA synthetase
Probab=53.68 E-value=33 Score=37.14 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
|..+|..|.+-...+++...++|..++..|+.+...|..++..+.+++..+..
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=53.37 E-value=1.4e+02 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE 290 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~e 290 (386)
.+|+.+...+-+.|.+.|..=++.+.+.+.++...+.+-..+..+
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777777777666666655544
No 469
>PRK14127 cell division protein GpsB; Provisional
Probab=53.36 E-value=58 Score=28.51 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+...|..++..|++++..|+.+...++.++.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35555555555555555555555555555444
No 470
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.33 E-value=82 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|+.|+..|+...+.-.+.|..|...+.+.......++.+|.-|
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777666666666666666655
No 471
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.24 E-value=1.2e+02 Score=35.79 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=8.0
Q ss_pred CCCcchHHHhhhcc
Q 016610 331 VTPVSTENLLSRVN 344 (386)
Q Consensus 331 ~~p~~~e~lls~vd 344 (386)
+-.|-.++||.+-|
T Consensus 556 IGKVid~eLL~r~d 569 (1201)
T PF12128_consen 556 IGKVIDEELLYRTD 569 (1201)
T ss_pred hHhhCCHHHhcCCC
Confidence 34445566776655
No 472
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.11 E-value=1.2e+02 Score=30.97 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccccCCCCcch
Q 016610 264 LRKQAEAEELSRKVDSLID-------ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVST 336 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~-------EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~~~~~~p~~~ 336 (386)
+||+.+++.+.+|++.|.+ |.....+++..|-+.|-.--.-...|+.+|..... .+.+.+.+.+...++.+
T Consensus 143 errk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r--se~~rqeeaensm~~i~ 220 (338)
T KOG3647|consen 143 ERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR--SEPIRQEEAENSMPFIP 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh--hhHHHHHHHHhcchhhH
Q ss_pred HHHhhhccCCCCCcCcccccccccccCCCchhhHhh
Q 016610 337 ENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQ 372 (386)
Q Consensus 337 e~lls~vd~~~~~~~~~~~~~~~~~~~~~~~~kl~q 372 (386)
+.|..-=+.....+..-.++.|+-.-.-.-.-++-|
T Consensus 221 ekl~ee~~~~d~~g~~DD~d~D~~~~D~rds~~~~~ 256 (338)
T KOG3647|consen 221 EKLIEEDDDDDDEGDLDDEDLDSEIPDIRDSDKLMQ 256 (338)
T ss_pred HHhhhhhhhccccccccccccCCCCCchhhHHHHHH
No 473
>PF15456 Uds1: Up-regulated During Septation
Probab=53.10 E-value=1.7e+02 Score=26.08 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL------------------IDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L------------------e~EN~~Lr~el~~L~ee~~~L 301 (386)
.++=.++||+-+.+.+|.-+-|.+..=...+-+....+..| +.+...+..++..+..++..+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 016610 302 RQENAALLEKL 312 (386)
Q Consensus 302 ~sEN~~LkeqL 312 (386)
+..-..++.+|
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 474
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=53.04 E-value=27 Score=37.74 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.....|+.+|..|..++.+|.+.+.+.+.|...|+++|..|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 1 DDLRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 475
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=53.02 E-value=50 Score=33.22 Aligned_cols=65 Identities=32% Similarity=0.587 Sum_probs=0.0
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCccCCCCCCCCCCCC---CCcccc-CCCc---cccCCCCCCCCCCCCCCCCCCC
Q 016610 41 PRVAIPP---YYNSPIASGHAPQPYMWGPAQPMMPPYGA---PYAAIY-STGG---VYAHPAVPLGSHAHNHGVPTSP 108 (386)
Q Consensus 41 p~~~~pp---~f~s~vas~~~phPYmWG~~qpmmppyGt---PY~a~Y-p~Gg---vYaHP~~p~g~~p~~~~~~~sp 108 (386)
|...+|| |.-++|.+++-+.+=|=|. |-||-|- |-+.+| |+|| .|.-|-||+|.-+-+..+|+-+
T Consensus 130 p~g~~pp~~~~gmpp~p~~~~~p~gmp~~---~ppp~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~pg~ 204 (341)
T KOG2893|consen 130 PSGPPPPSMAYGMPPMPSGMMPPRGMPGA---YPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPGP 204 (341)
T ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCCCCC
No 476
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=52.96 E-value=13 Score=40.04 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 259 ARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
|.-...-++++|++|++|+++|+++...|.++|.+++++
T Consensus 22 a~~~~~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 22 AMADDIDLLQKIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccccccchhhHh
No 477
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=52.94 E-value=1.2e+02 Score=31.06 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcc
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN 326 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~ 326 (386)
+|.-|.++||+..++-+++++++...+..++.+| .....|..+|....++...+...-. .+..-..++-..++..-+.
T Consensus 276 kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i-~~l~~i~~ei~~~e~~~~~~~~~r~-~~~~~~~~~~~rlgk~~~~ 353 (387)
T PF07767_consen 276 KKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI-DRLKEIAKEIEKEEEEREKRRERRK-RKKEKKKLKPKRLGKHKFP 353 (387)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccccccCccCCC
Q ss_pred cccCCCCcchH
Q 016610 327 EDKRVTPVSTE 337 (386)
Q Consensus 327 ~~~~~~p~~~e 337 (386)
+......++-|
T Consensus 354 ~~~~eV~L~dE 364 (387)
T PF07767_consen 354 EPPLEVQLSDE 364 (387)
T ss_pred CCCCCccChhh
No 478
>PRK14146 heat shock protein GrpE; Provisional
Probab=52.90 E-value=58 Score=31.47 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccccCCCCcchHHHhhhccC
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNN 345 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~~~~~~p~~~e~lls~vd~ 345 (386)
...|+.+++.|+.+...|+.++-++..+++-++.....=++++....... -...||..|||
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~---------------~~~~lLpv~Dn 116 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKS---------------LVSGFLNPIDN 116 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhHHhH
No 479
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.87 E-value=76 Score=33.22 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRK---VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~r---Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|..+..-+..|+-|-.-...+..+... ++.|..+...|++++..|.+++..++.+...+...|-++
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
No 480
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=52.83 E-value=23 Score=33.85 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..+|+.+-..|+.++..|+.++..|..|+..|+.++..+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
No 481
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=52.83 E-value=1.4e+02 Score=27.80 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 016610 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSAQ 316 (386)
Q Consensus 259 ARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~----~L~sEN~~LkeqL~~lq 316 (386)
|.|-|.-...++.-|+..++.-+.--..|..++.+|+++-+ +...+...-...|.+.+
T Consensus 76 A~RQ~q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~ 137 (152)
T PF15186_consen 76 AARQRQLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQ 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.80 E-value=51 Score=37.91 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccccchhhcccccCCCCcchHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA-----QLGNKQEIVLNEDKRVTPVSTENLLS 341 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l-----ql~~~~Ev~~~~~~~~~p~~~e~lls 341 (386)
..|+++|...+..|+....+|--+++.|++....|..||..|.++++.+ ++.. ..++|.-
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~---------------q~~~Lk~ 713 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD---------------QLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q ss_pred hccCCCCCcCcccccccccccCCCchhhHh
Q 016610 342 RVNNSGTVDRNMEEGGHLFEKNSNSGAKLH 371 (386)
Q Consensus 342 ~vd~~~~~~~~~~~~~~~~~~~~~~~~kl~ 371 (386)
.+-+-++..+..-++.++++...+.-..++
T Consensus 714 qLg~~~~~~~~~~q~~e~~~t~~eel~a~~ 743 (970)
T KOG0946|consen 714 QLGIISSKQRDLLQGAEASKTQNEELNAAL 743 (970)
T ss_pred HhcccccchhhHHhHHHhccCChHHHHHHH
No 483
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=52.76 E-value=1e+02 Score=31.39 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 244 RELKRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlRKqa~leeLE-------~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+.+.+..-+..+-+--++-|..||=+|+-|| ++|+.-+.+...|..|+..|.+.|+.|+.-+..|-..|.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
No 484
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.75 E-value=70 Score=33.47 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL~~lq 316 (386)
+|-+.=|.+--.-|+.++..+...|..|++--+.+++ +.++|+.+|+.|+.+|-..+
T Consensus 60 ~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 60 RREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 485
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.74 E-value=67 Score=26.95 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
..+-++.|+.+++.|+.+...|.+++..+++++..|+.+.+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.56 E-value=48 Score=33.02 Aligned_cols=59 Identities=29% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh-ccccchhhc
Q 016610 267 QAEAEELSRKVDSLIDENAS----LKSEINQLSENS---EKLRQENAALLEKLKSAQ-LGNKQEIVL 325 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~----Lr~el~~L~ee~---~~L~sEN~~LkeqL~~lq-l~~~~Ev~~ 325 (386)
++.++.++++|+.+..+... |..+|..|.+.. ..|..+-..|..-|.+.. .|.-+|+.+
T Consensus 12 ~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~L 78 (304)
T PF02646_consen 12 KEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQL 78 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHH
No 487
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=52.40 E-value=52 Score=36.80 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|++++..|..++++|++.. ..+++.|+.++++|+.|..-|.-++..+
T Consensus 11 ~ek~~E~~~l~~~~~~lk~~~---~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 11 QEKQKERQALKSSVEELKESH---EEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.37 E-value=1.3e+02 Score=36.17 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 244 RELKRERRKQSNRESARR--SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 244 rElKR~RRk~sNRESARR--SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++....-+++.+++.-+ -+.=-|....+.++++.+++.+...|..++.+++++++.+...|..++..+...
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
No 489
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.13 E-value=1.4e+02 Score=31.06 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
|+-.+|++..-.+=+.-.+-=+..++++.+++.+..++..-...+..++.++.++++++..|...
T Consensus 255 ekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 255 EKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=51.85 E-value=1.5e+02 Score=32.18 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|...+++-.||.=--.-+-|+=+.+|..+.|-..-.-++.+--..+.+-+.+|.+.-++|+.+...|..+|+.|+
T Consensus 387 ~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~ 461 (489)
T KOG3684|consen 387 DQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALT 461 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=51.84 E-value=1.2e+02 Score=36.49 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 240 IQNERELKRERRKQSNRES---ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 240 lqdErElKR~RRk~sNRES---ARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++..+.++.++..-+|+- ++.+-....+.+.+++.+...|++++..|..++..+++....+..++..+-+..+.|.
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 492
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.82 E-value=1.1e+02 Score=36.05 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCCCCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 232 AVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 232 ~~~~~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
..+...-|..+|.+++.+ .+.+...-.+.+.+.++++.++.....+...+..++..++.++...+.+...|+.+
T Consensus 591 ~~I~~pd~~~~ee~L~~~------l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 664 (1201)
T PF12128_consen 591 SAIDVPDYAASEEELRER------LEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNE 664 (1201)
T ss_pred hhcCCchhhcChHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHhhccccchh
Q 016610 312 LKSAQLGNKQEI 323 (386)
Q Consensus 312 L~~lql~~~~Ev 323 (386)
...++....++.
T Consensus 665 ~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 665 REQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHH
No 493
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.60 E-value=92 Score=33.92 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK--------------LRQENAAL 308 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~--------------L~sEN~~L 308 (386)
|.-.+|.+=...+-...|..-..=.+.+.+|...-..--....+++.++.+|..++.+ |..+-+.|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HHHHHHh--hccccchhhcccccCCCCcchHHHhhhccCCCCCcCcccccccccccCCCchhhHhhhhc
Q 016610 309 LEKLKSA--QLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLD 375 (386)
Q Consensus 309 keqL~~l--ql~~~~Ev~~~~~~~~~p~~~e~lls~vd~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~ 375 (386)
+.+|..| ++....|+-. -...|++++....+.+++.++--..++.+...-.+|-|-+|
T Consensus 417 r~Kldtll~~ln~Pnq~k~---------Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e 476 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAPNQLKA---------RLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQE 476 (508)
T ss_pred HHHHHHHHHHhcChHHHHH---------HHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHH
No 494
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=51.59 E-value=58 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
.+-++-|+.|++.|+.....|..++..++.++..++...++|-.+
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 495
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.54 E-value=41 Score=27.80 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+...|++++..|+.+...+..+...++.+++-|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 496
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=51.42 E-value=1.9e+02 Score=27.12 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred CccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 016610 237 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE------ 310 (386)
Q Consensus 237 e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke------ 310 (386)
+.+.+--.+..++-+..++....+..|+.+++ +.|..+.+.|......|..+-..|.++...|......|..
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE--~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~ 137 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQRE--EQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQ 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHhhccccchh
Q 016610 311 -KLKSAQLGNKQEI 323 (386)
Q Consensus 311 -qL~~lql~~~~Ev 323 (386)
+|..+.--+..|+
T Consensus 138 ~~Le~iAglT~eEA 151 (201)
T PF12072_consen 138 QELEEIAGLTAEEA 151 (201)
T ss_pred HHHHHHhCCCHHHH
No 497
>PF14645 Chibby: Chibby family
Probab=51.36 E-value=33 Score=30.10 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 320 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~ 320 (386)
...++..|++++.+|++++..|+-++..|..-|.+..+..+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~ 109 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAH 109 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK14158 heat shock protein GrpE; Provisional
Probab=51.26 E-value=45 Score=31.78 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.+.++..|+.+...|..++..|+.++.++.+|...+|.+...
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=51.18 E-value=75 Score=31.84 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++-+..+..+++.++.....|..+...|..++++.+.|....+.+|+.||
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=51.01 E-value=52 Score=26.93 Aligned_cols=37 Identities=38% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
+..+...+..+...|..++.+|+++...|+.|...|.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!