Query 016610
Match_columns 386
No_of_seqs 194 out of 933
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.4E-14 4.8E-19 109.1 6.3 52 247-298 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 9.8E-13 3.4E-17 101.0 9.7 56 247-302 2-57 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 1.5E-12 5.3E-17 99.0 9.1 56 247-302 1-56 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.3 2.6E-12 8.9E-17 98.2 7.5 55 247-301 1-55 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 2.3E-12 7.9E-17 99.5 6.8 51 249-299 11-61 (63)
6 1ci6_A Transcription factor AT 99.2 6.6E-11 2.3E-15 91.1 7.4 61 246-313 1-61 (63)
7 1gd2_E Transcription factor PA 99.1 1.9E-10 6.6E-15 90.7 8.4 61 249-309 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 98.9 5.9E-09 2E-13 85.3 9.0 62 247-315 15-76 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 7.2E-09 2.5E-13 83.2 8.8 55 248-302 16-70 (78)
10 3a5t_A Transcription factor MA 98.8 1.5E-10 5.3E-15 97.9 -4.0 59 240-298 30-88 (107)
11 2wt7_B Transcription factor MA 98.5 7E-07 2.4E-11 73.6 10.0 69 240-315 20-88 (90)
12 2oqq_A Transcription factor HY 97.6 0.00013 4.3E-09 52.5 5.8 40 267-313 2-41 (42)
13 1deb_A APC protein, adenomatou 97.1 0.0026 8.8E-08 47.6 7.9 47 270-316 5-51 (54)
14 1skn_P DNA-binding domain of S 96.6 0.0009 3.1E-08 55.2 2.7 32 244-275 59-90 (92)
15 2w6a_A ARF GTPase-activating p 95.8 0.036 1.2E-06 42.7 7.4 41 270-310 22-62 (63)
16 3s9g_A Protein hexim1; cyclin 95.8 0.037 1.3E-06 46.4 8.1 53 264-316 33-92 (104)
17 2jee_A YIIU; FTSZ, septum, coi 95.6 0.052 1.8E-06 43.9 8.2 48 269-316 21-68 (81)
18 3hnw_A Uncharacterized protein 95.4 0.068 2.3E-06 46.6 8.9 53 264-316 71-123 (138)
19 3oja_B Anopheles plasmodium-re 95.0 0.25 8.4E-06 49.8 13.0 41 275-315 537-577 (597)
20 3m48_A General control protein 94.9 0.025 8.5E-07 38.8 3.7 27 270-296 2-28 (33)
21 3he5_A Synzip1; heterodimeric 94.9 0.091 3.1E-06 38.0 6.8 44 270-313 5-48 (49)
22 1go4_E MAD1 (mitotic arrest de 94.9 0.069 2.3E-06 44.7 7.0 23 295-317 74-96 (100)
23 2c9l_Y EB1, zebra, BZLF1 trans 94.9 0.13 4.4E-06 39.2 7.8 38 251-288 5-42 (63)
24 2oxj_A Hybrid alpha/beta pepti 94.7 0.044 1.5E-06 37.7 4.4 29 269-297 2-30 (34)
25 1kd8_B GABH BLL, GCN4 acid bas 94.5 0.071 2.4E-06 37.1 5.1 31 269-299 2-32 (36)
26 3a7p_A Autophagy protein 16; c 94.2 0.61 2.1E-05 41.6 11.9 72 244-315 65-136 (152)
27 1kd8_A GABH AIV, GCN4 acid bas 94.2 0.061 2.1E-06 37.4 4.3 31 269-299 2-32 (36)
28 3hnw_A Uncharacterized protein 94.1 0.32 1.1E-05 42.3 9.8 50 267-316 81-130 (138)
29 3vmx_A Voltage-gated hydrogen 93.8 0.24 8.1E-06 36.6 7.1 41 274-314 3-43 (48)
30 3c3f_A Alpha/beta peptide with 93.7 0.091 3.1E-06 36.1 4.4 29 269-297 2-30 (34)
31 2jee_A YIIU; FTSZ, septum, coi 93.7 0.32 1.1E-05 39.4 8.4 39 269-307 7-45 (81)
32 3efg_A Protein SLYX homolog; x 93.7 0.17 5.7E-06 40.3 6.6 50 268-317 14-63 (78)
33 1t2k_D Cyclic-AMP-dependent tr 93.2 0.51 1.8E-05 35.3 8.4 38 275-312 22-59 (61)
34 3a2a_A Voltage-gated hydrogen 93.2 0.21 7.3E-06 37.9 6.1 41 274-314 10-50 (58)
35 3cvf_A Homer-3, homer protein 93.2 0.15 5.3E-06 41.0 5.7 47 269-315 7-53 (79)
36 3c3g_A Alpha/beta peptide with 93.1 0.13 4.5E-06 35.2 4.4 28 270-297 2-29 (33)
37 3m9b_A Proteasome-associated A 93.0 0.066 2.3E-06 51.2 4.0 42 268-316 54-95 (251)
38 2bni_A General control protein 93.0 0.11 3.7E-06 35.8 3.9 29 268-296 1-29 (34)
39 3oja_B Anopheles plasmodium-re 93.0 0.55 1.9E-05 47.3 10.8 52 264-315 505-556 (597)
40 1uo4_A General control protein 92.9 0.12 4E-06 35.7 3.9 28 269-296 2-29 (34)
41 3mq7_A Bone marrow stromal ant 92.7 0.52 1.8E-05 40.6 8.6 41 274-314 70-110 (121)
42 1ci6_A Transcription factor AT 92.7 0.33 1.1E-05 36.9 6.7 27 270-296 32-58 (63)
43 2hy6_A General control protein 92.6 0.16 5.4E-06 35.0 4.2 29 269-297 2-30 (34)
44 2dfs_A Myosin-5A; myosin-V, in 92.4 0.73 2.5E-05 51.5 11.8 16 300-315 1027-1042(1080)
45 3m91_A Proteasome-associated A 92.3 0.52 1.8E-05 35.0 7.2 38 270-307 11-48 (51)
46 2wq1_A General control protein 92.3 0.2 6.8E-06 34.3 4.4 27 270-296 2-28 (33)
47 3m91_A Proteasome-associated A 92.1 0.55 1.9E-05 34.9 7.1 42 274-315 8-49 (51)
48 3cve_A Homer protein homolog 1 91.9 0.61 2.1E-05 36.9 7.5 45 271-315 3-47 (72)
49 2wt7_A Proto-oncogene protein 91.8 1.5 5.2E-05 33.1 9.5 36 277-312 25-60 (63)
50 2kz5_A Transcription factor NF 91.3 0.016 5.6E-07 47.7 -2.1 25 244-268 63-87 (91)
51 4emc_A Monopolin complex subun 91.2 0.36 1.2E-05 44.4 6.4 83 270-361 15-99 (190)
52 1jnm_A Proto-oncogene C-JUN; B 91.1 0.63 2.1E-05 35.0 6.6 36 276-311 23-58 (62)
53 2zxx_A Geminin; coiled-coil, c 90.8 0.58 2E-05 37.7 6.5 39 278-316 30-68 (79)
54 2yy0_A C-MYC-binding protein; 90.8 0.44 1.5E-05 35.4 5.3 32 275-313 19-50 (53)
55 1t6f_A Geminin; coiled-coil, c 90.7 0.36 1.2E-05 33.7 4.5 30 281-310 6-35 (37)
56 2yy0_A C-MYC-binding protein; 90.7 0.36 1.2E-05 35.9 4.8 23 272-294 23-45 (53)
57 1uii_A Geminin; human, DNA rep 90.7 0.92 3.2E-05 36.9 7.5 39 278-316 42-80 (83)
58 4h22_A Leucine-rich repeat fli 90.1 1.2 4E-05 37.5 7.9 47 269-315 31-77 (103)
59 1nkp_B MAX protein, MYC proto- 89.6 1.2 4.2E-05 34.8 7.4 33 284-316 49-81 (83)
60 2wt7_B Transcription factor MA 89.1 0.92 3.1E-05 37.2 6.5 31 285-315 51-81 (90)
61 1jcd_A Major outer membrane li 88.8 2.3 8E-05 31.6 7.9 47 268-314 4-50 (52)
62 2w83_C C-JUN-amino-terminal ki 88.5 0.71 2.4E-05 37.0 5.3 43 273-315 7-56 (77)
63 1fmh_A General control protein 88.3 0.57 2E-05 31.4 3.9 29 270-298 3-31 (33)
64 1wlq_A Geminin; coiled-coil; 2 88.3 1.4 4.9E-05 35.7 7.0 38 278-315 34-71 (83)
65 3htk_A Structural maintenance 88.0 3.4 0.00011 30.2 8.4 48 266-313 10-57 (60)
66 2r2v_A GCN4 leucine zipper; co 87.9 0.77 2.6E-05 31.6 4.4 28 269-296 2-29 (34)
67 3a7o_A Autophagy protein 16; c 87.9 2 6.7E-05 34.2 7.3 49 269-317 26-74 (75)
68 1gd2_E Transcription factor PA 87.9 2.3 7.8E-05 33.3 7.8 27 272-298 40-66 (70)
69 3i00_A HIP-I, huntingtin-inter 87.8 6.8 0.00023 33.4 11.4 47 263-316 35-81 (120)
70 1nkp_A C-MYC, MYC proto-oncoge 87.7 2.2 7.7E-05 34.2 7.9 33 284-316 54-86 (88)
71 2wvr_A Geminin; DNA replicatio 87.3 1.6 5.3E-05 40.8 7.5 38 279-316 112-149 (209)
72 3oja_A Leucine-rich immune mol 87.3 5.8 0.0002 39.1 12.3 34 280-313 433-466 (487)
73 1wt6_A Myotonin-protein kinase 87.1 6.7 0.00023 31.7 10.2 62 255-319 14-75 (81)
74 3u06_A Protein claret segregat 86.9 1.8 6.1E-05 43.5 8.4 50 267-316 9-58 (412)
75 4etp_A Kinesin-like protein KA 86.6 2 6.9E-05 42.9 8.6 50 266-315 8-57 (403)
76 3m9b_A Proteasome-associated A 86.6 0.68 2.3E-05 44.3 4.9 35 266-300 59-93 (251)
77 1gmj_A ATPase inhibitor; coile 86.2 5.9 0.0002 32.2 9.5 54 255-315 24-77 (84)
78 3o0z_A RHO-associated protein 86.1 9.2 0.00032 34.6 11.7 70 242-314 11-80 (168)
79 2v4h_A NF-kappa-B essential mo 85.9 8.9 0.0003 32.6 10.9 62 255-316 32-103 (110)
80 1nkp_B MAX protein, MYC proto- 85.8 0.93 3.2E-05 35.5 4.6 30 268-297 47-76 (83)
81 3nmd_A CGMP dependent protein 85.7 1.3 4.5E-05 35.0 5.3 20 269-288 41-60 (72)
82 1hjb_A Ccaat/enhancer binding 85.6 4.9 0.00017 32.6 8.9 61 243-303 15-78 (87)
83 1ic2_A Tropomyosin alpha chain 85.5 4.4 0.00015 31.7 8.4 48 268-315 20-67 (81)
84 3a7p_A Autophagy protein 16; c 85.5 3.3 0.00011 36.9 8.4 46 271-316 78-123 (152)
85 3s9g_A Protein hexim1; cyclin 85.1 4.8 0.00016 33.8 8.7 30 267-296 64-93 (104)
86 1dip_A Delta-sleep-inducing pe 85.0 0.51 1.7E-05 37.8 2.7 37 283-319 16-52 (78)
87 3nmd_A CGMP dependent protein 84.7 4.3 0.00015 32.2 7.8 35 266-300 31-65 (72)
88 1am9_A Srebp-1A, protein (ster 84.5 3.5 0.00012 32.4 7.4 67 250-316 5-77 (82)
89 3u1c_A Tropomyosin alpha-1 cha 84.4 15 0.00053 29.9 11.9 28 271-298 33-60 (101)
90 3u1c_A Tropomyosin alpha-1 cha 84.2 16 0.00054 29.9 12.3 50 266-315 21-70 (101)
91 4h22_A Leucine-rich repeat fli 84.2 4.1 0.00014 34.3 7.9 48 267-314 36-83 (103)
92 1nlw_A MAD protein, MAX dimeri 83.9 1.9 6.6E-05 34.1 5.6 27 287-313 52-78 (80)
93 1a93_B MAX protein, coiled coi 83.9 1.8 6.2E-05 29.8 4.6 26 289-314 7-32 (34)
94 2j5u_A MREC protein; bacterial 83.7 0.5 1.7E-05 44.4 2.5 36 280-315 24-62 (255)
95 3s4r_A Vimentin; alpha-helix, 83.7 4.9 0.00017 32.7 8.1 22 275-296 23-44 (93)
96 4b4t_K 26S protease regulatory 83.7 1.7 5.7E-05 43.8 6.4 46 271-316 45-90 (428)
97 2v66_B Nuclear distribution pr 83.6 5.1 0.00018 33.9 8.4 34 273-306 40-73 (111)
98 1ic2_A Tropomyosin alpha chain 83.5 14 0.00048 28.8 12.2 61 255-315 14-74 (81)
99 3o0z_A RHO-associated protein 83.3 15 0.00053 33.1 11.9 41 252-292 74-114 (168)
100 2eqb_B RAB guanine nucleotide 83.2 4.8 0.00016 33.5 7.9 18 297-314 77-94 (97)
101 3swy_A Cyclic nucleotide-gated 83.1 5 0.00017 29.2 7.0 42 272-316 2-43 (46)
102 2oqq_A Transcription factor HY 83.0 2.4 8.2E-05 30.5 5.2 25 267-291 16-40 (42)
103 3na7_A HP0958; flagellar bioge 83.0 11 0.00037 35.0 11.2 42 269-310 91-132 (256)
104 3q8t_A Beclin-1; autophagy, AT 82.7 18 0.00062 29.4 12.1 22 291-312 62-83 (96)
105 2lw1_A ABC transporter ATP-bin 82.7 3.8 0.00013 32.6 7.0 50 266-315 20-75 (89)
106 3q8t_A Beclin-1; autophagy, AT 82.5 6 0.0002 32.3 8.2 32 272-303 22-53 (96)
107 2fxo_A Myosin heavy chain, car 82.4 12 0.00041 31.6 10.4 43 273-315 81-123 (129)
108 3efg_A Protein SLYX homolog; x 82.3 4.5 0.00015 32.0 7.2 45 271-315 10-54 (78)
109 2w83_C C-JUN-amino-terminal ki 82.0 6.5 0.00022 31.5 7.9 43 271-313 33-75 (77)
110 3trt_A Vimentin; cytoskeleton, 81.9 15 0.00052 28.0 10.4 55 252-309 22-76 (77)
111 4dzn_A Coiled-coil peptide CC- 81.5 2.9 0.0001 28.0 4.8 23 287-309 7-29 (33)
112 3htk_A Structural maintenance 81.4 9.4 0.00032 27.8 8.2 47 269-315 6-52 (60)
113 3u59_A Tropomyosin beta chain; 81.2 7.6 0.00026 31.6 8.4 33 272-304 27-59 (101)
114 2xdj_A Uncharacterized protein 81.2 15 0.00053 29.4 10.0 44 270-313 22-65 (83)
115 1wt6_A Myotonin-protein kinase 81.0 7.1 0.00024 31.6 7.9 50 255-304 25-74 (81)
116 3ghg_A Fibrinogen alpha chain; 80.7 3.5 0.00012 43.2 7.6 18 240-257 56-73 (562)
117 2wuj_A Septum site-determining 80.4 1.6 5.5E-05 32.5 3.7 29 268-296 27-55 (57)
118 1joc_A EEA1, early endosomal a 80.2 9 0.00031 32.3 8.8 46 268-313 11-56 (125)
119 2xdj_A Uncharacterized protein 80.1 14 0.00049 29.6 9.4 46 261-306 20-65 (83)
120 3mq9_A Bone marrow stromal ant 79.9 14 0.00047 36.3 11.3 31 287-317 434-464 (471)
121 3mq7_A Bone marrow stromal ant 79.6 7.2 0.00025 33.6 7.9 32 284-315 73-104 (121)
122 2dgc_A Protein (GCN4); basic d 79.5 8.2 0.00028 29.3 7.5 25 291-315 32-56 (63)
123 2v66_B Nuclear distribution pr 79.3 28 0.00095 29.4 12.3 25 291-315 37-61 (111)
124 1nkp_A C-MYC, MYC proto-oncoge 79.2 3.8 0.00013 32.8 5.9 32 268-299 52-83 (88)
125 3oja_A Leucine-rich immune mol 79.2 17 0.00059 35.8 11.8 51 262-312 429-479 (487)
126 2v71_A Nuclear distribution pr 79.2 28 0.00096 31.9 12.3 45 271-315 91-135 (189)
127 3he5_B Synzip2; heterodimeric 78.9 6.3 0.00022 28.7 6.3 25 279-303 21-45 (52)
128 3swf_A CGMP-gated cation chann 78.2 5.3 0.00018 31.8 6.3 44 271-317 3-46 (74)
129 2ve7_C Kinetochore protein NUF 78.2 3 0.0001 39.3 5.7 52 246-297 119-170 (250)
130 4ati_A MITF, microphthalmia-as 78.0 6.3 0.00022 33.2 7.1 72 246-317 22-112 (118)
131 1gu4_A CAAT/enhancer binding p 77.5 7.9 0.00027 30.7 7.1 54 245-298 17-73 (78)
132 3cvf_A Homer-3, homer protein 77.2 26 0.0009 28.0 10.1 49 267-315 26-74 (79)
133 1gmj_A ATPase inhibitor; coile 77.0 17 0.00058 29.5 9.0 40 255-294 36-77 (84)
134 1dh3_A Transcription factor CR 76.9 3.7 0.00013 30.4 4.8 27 290-316 23-49 (55)
135 3bas_A Myosin heavy chain, str 76.8 27 0.00091 27.8 12.2 52 265-316 32-83 (89)
136 4dzn_A Coiled-coil peptide CC- 76.5 6.2 0.00021 26.5 5.2 27 270-296 4-30 (33)
137 3u59_A Tropomyosin beta chain; 76.2 29 0.001 28.0 12.3 58 256-313 18-75 (101)
138 3ra3_B P2F; coiled coil domain 75.5 2.2 7.6E-05 27.7 2.8 19 279-297 4-22 (28)
139 3na7_A HP0958; flagellar bioge 75.5 15 0.00051 34.0 9.6 48 268-315 32-79 (256)
140 2eqb_B RAB guanine nucleotide 75.1 35 0.0012 28.3 12.3 49 268-316 12-60 (97)
141 4emc_A Monopolin complex subun 74.9 3.5 0.00012 38.0 5.0 41 269-309 21-61 (190)
142 3i00_A HIP-I, huntingtin-inter 74.9 20 0.00068 30.5 9.4 38 270-307 17-58 (120)
143 3bbp_D GRIP and coiled-coil do 74.6 2.4 8.2E-05 33.5 3.3 50 272-321 19-68 (71)
144 4ani_A Protein GRPE; chaperone 74.5 8.7 0.0003 35.7 7.7 9 368-376 170-178 (213)
145 2v4h_A NF-kappa-B essential mo 74.4 36 0.0012 28.9 10.7 48 268-315 62-109 (110)
146 3cve_A Homer protein homolog 1 74.0 30 0.001 27.2 10.1 49 267-315 20-68 (72)
147 1nlw_A MAD protein, MAX dimeri 73.9 7.1 0.00024 30.8 6.0 34 267-300 46-79 (80)
148 3ra3_A P1C; coiled coil domain 73.8 2.1 7.3E-05 27.8 2.3 24 278-301 3-26 (28)
149 1am9_A Srebp-1A, protein (ster 73.8 4.8 0.00016 31.7 5.0 28 267-294 49-76 (82)
150 1a93_B MAX protein, coiled coi 72.3 5.5 0.00019 27.5 4.2 25 282-306 7-31 (34)
151 1ik9_A DNA repair protein XRCC 72.1 9.9 0.00034 35.1 7.4 24 270-293 141-164 (213)
152 2oto_A M protein; helical coil 71.4 21 0.0007 30.8 8.9 32 270-301 52-83 (155)
153 3qh9_A Liprin-beta-2; coiled-c 71.0 22 0.00076 28.7 8.2 24 268-291 26-49 (81)
154 1wle_A Seryl-tRNA synthetase; 70.6 19 0.00065 37.1 9.8 16 300-315 120-135 (501)
155 1gk7_A Vimentin; intermediate 70.5 7.7 0.00027 27.1 4.8 28 287-314 11-38 (39)
156 1fmh_B General control protein 70.5 7.3 0.00025 26.1 4.4 29 270-298 3-31 (33)
157 4etp_A Kinesin-like protein KA 70.4 8.6 0.00029 38.3 7.1 43 269-311 18-60 (403)
158 2xv5_A Lamin-A/C; structural p 70.3 28 0.00097 27.2 8.6 45 271-315 8-52 (74)
159 3iv1_A Tumor susceptibility ge 70.3 33 0.0011 27.4 9.1 52 265-316 22-73 (78)
160 2dq0_A Seryl-tRNA synthetase; 69.9 18 0.00062 36.6 9.4 27 288-314 75-101 (455)
161 3qne_A Seryl-tRNA synthetase, 69.8 18 0.0006 37.3 9.4 22 263-284 42-63 (485)
162 1p9i_A Cortexillin I/GCN4 hybr 69.8 6.1 0.00021 26.2 3.9 18 298-315 8-25 (31)
163 2ve7_C Kinetochore protein NUF 69.8 2.1 7.2E-05 40.3 2.4 39 264-302 144-182 (250)
164 3he5_A Synzip1; heterodimeric 69.6 18 0.00063 26.0 6.7 40 277-316 5-44 (49)
165 3a2a_A Voltage-gated hydrogen 69.5 13 0.00044 28.2 6.1 27 270-296 20-46 (58)
166 3tnu_B Keratin, type II cytosk 69.5 7 0.00024 32.9 5.4 24 271-294 46-69 (129)
167 2ve7_A Kinetochore protein HEC 69.3 6.2 0.00021 38.1 5.7 35 274-308 184-218 (315)
168 3s4r_A Vimentin; alpha-helix, 69.0 44 0.0015 27.0 10.5 24 291-314 58-81 (93)
169 3he5_B Synzip2; heterodimeric 69.0 21 0.0007 26.0 6.9 32 277-308 12-43 (52)
170 1f5n_A Interferon-induced guan 68.8 37 0.0013 35.6 11.8 20 243-265 486-505 (592)
171 1wle_A Seryl-tRNA synthetase; 68.8 41 0.0014 34.7 11.9 29 286-314 120-148 (501)
172 4e61_A Protein BIM1; EB1-like 68.8 20 0.00067 30.3 7.8 45 272-316 8-52 (106)
173 1jcd_A Major outer membrane li 68.6 18 0.00061 26.8 6.7 37 275-311 4-40 (52)
174 1p9i_A Cortexillin I/GCN4 hybr 68.6 4.6 0.00016 26.7 3.1 26 271-296 2-27 (31)
175 3qh9_A Liprin-beta-2; coiled-c 68.3 25 0.00084 28.4 7.9 45 270-314 21-65 (81)
176 3oa7_A Head morphogenesis prot 68.2 12 0.00042 34.7 7.0 50 277-326 32-81 (206)
177 3iv1_A Tumor susceptibility ge 67.9 45 0.0015 26.6 10.3 54 263-316 13-66 (78)
178 3u06_A Protein claret segregat 67.6 7.6 0.00026 38.9 6.1 21 273-293 22-42 (412)
179 1g6u_A Domain swapped dimer; d 67.5 22 0.00074 25.6 6.6 25 290-314 21-45 (48)
180 1dip_A Delta-sleep-inducing pe 67.3 3.1 0.00011 33.3 2.5 24 271-294 18-41 (78)
181 1lwu_C Fibrinogen gamma chain; 67.2 15 0.00052 36.0 7.9 44 269-312 13-56 (323)
182 2xzr_A Immunoglobulin-binding 66.6 57 0.002 27.4 10.9 11 250-260 34-44 (114)
183 2xv5_A Lamin-A/C; structural p 66.1 34 0.0012 26.8 8.3 53 261-313 5-57 (74)
184 1go4_E MAD1 (mitotic arrest de 65.4 12 0.00041 31.2 5.8 24 270-293 14-37 (100)
185 2fxo_A Myosin heavy chain, car 65.2 61 0.0021 27.2 12.3 46 270-315 64-109 (129)
186 3lay_A Zinc resistance-associa 65.1 27 0.00093 31.4 8.6 6 239-244 67-72 (175)
187 3bas_A Myosin heavy chain, str 65.1 40 0.0014 26.8 8.8 34 275-308 35-68 (89)
188 3q0x_A Centriole protein; cent 65.0 16 0.00056 34.3 7.4 38 269-306 179-216 (228)
189 2lz1_A Nuclear factor erythroi 64.7 0.13 4.4E-06 42.4 -6.0 23 245-267 64-86 (90)
190 1lwu_C Fibrinogen gamma chain; 64.6 16 0.00054 35.9 7.5 44 272-315 9-52 (323)
191 1ses_A Seryl-tRNA synthetase; 64.2 28 0.00096 34.8 9.4 30 286-315 68-97 (421)
192 1fxk_C Protein (prefoldin); ar 64.1 29 0.00099 28.7 8.1 26 272-297 99-124 (133)
193 3w03_C DNA repair protein XRCC 64.1 16 0.00054 33.4 6.9 27 270-296 147-173 (184)
194 1zme_C Proline utilization tra 63.8 6.1 0.00021 28.9 3.4 24 268-291 44-67 (70)
195 3lay_A Zinc resistance-associa 63.8 51 0.0018 29.5 10.1 16 299-314 116-131 (175)
196 1j1d_C Troponin I, TNI; THIN f 63.6 20 0.00069 31.2 7.2 68 271-343 61-128 (133)
197 1m1j_A Fibrinogen alpha subuni 63.5 60 0.002 33.7 11.6 74 240-313 57-156 (491)
198 4gkw_A Spindle assembly abnorm 63.3 39 0.0013 29.9 8.9 42 276-317 113-161 (167)
199 3jsv_C NF-kappa-B essential mo 63.3 51 0.0017 27.2 9.1 63 254-316 9-81 (94)
200 4b4t_K 26S protease regulatory 63.0 13 0.00044 37.4 6.7 43 268-310 49-91 (428)
201 3m48_A General control protein 62.8 7.4 0.00025 26.6 3.3 23 293-315 4-26 (33)
202 2oa5_A Hypothetical protein BQ 62.8 4 0.00014 34.7 2.5 25 269-293 9-33 (110)
203 2zqm_A Prefoldin beta subunit 62.5 27 0.00092 27.9 7.4 37 279-315 74-110 (117)
204 2oxj_A Hybrid alpha/beta pepti 62.1 16 0.00053 25.2 4.8 24 287-310 6-29 (34)
205 2ocy_A RAB guanine nucleotide 62.0 53 0.0018 29.2 9.7 17 299-315 111-127 (154)
206 1hlo_A Protein (transcription 61.8 16 0.00055 28.3 5.7 60 257-316 18-77 (80)
207 2q6q_A Spindle POLE BODY compo 60.9 54 0.0019 25.9 8.4 40 277-316 19-58 (74)
208 1kd8_B GABH BLL, GCN4 acid bas 60.7 19 0.00066 25.0 5.2 28 286-313 5-32 (36)
209 3mtu_A Tropomyosin alpha-1 cha 60.6 15 0.00051 28.7 5.3 48 268-315 16-63 (75)
210 3ljm_A Coil Ser L9C; de novo d 60.6 12 0.0004 24.8 3.9 25 270-294 3-27 (31)
211 2zvf_A Alanyl-tRNA synthetase; 59.8 6.9 0.00023 33.5 3.6 26 272-297 29-54 (171)
212 1m1j_B Fibrinogen beta chain; 59.4 91 0.0031 32.1 12.2 18 298-315 170-187 (464)
213 2oa5_A Hypothetical protein BQ 59.2 5 0.00017 34.1 2.5 24 291-314 10-33 (110)
214 1uii_A Geminin; human, DNA rep 59.1 21 0.00073 28.9 6.0 29 268-296 46-74 (83)
215 3uux_B Mitochondrial division 58.9 37 0.0013 32.3 8.6 77 244-320 152-229 (242)
216 1joc_A EEA1, early endosomal a 58.9 34 0.0012 28.7 7.6 48 269-316 5-52 (125)
217 1deq_A Fibrinogen (alpha chain 58.6 22 0.00076 35.9 7.4 45 268-312 113-157 (390)
218 2b5u_A Colicin E3; high resolu 58.6 62 0.0021 33.9 10.8 25 257-281 317-341 (551)
219 1deb_A APC protein, adenomatou 58.4 12 0.00042 27.9 4.1 23 292-314 6-28 (54)
220 1fmh_A General control protein 58.0 11 0.00039 25.2 3.5 26 291-316 3-28 (33)
221 1uix_A RHO-associated kinase; 57.8 33 0.0011 27.0 6.8 30 273-302 2-31 (71)
222 3ghg_A Fibrinogen alpha chain; 57.6 23 0.0008 37.2 7.6 49 265-313 107-155 (562)
223 2wuj_A Septum site-determining 57.3 10 0.00034 28.1 3.6 24 293-316 31-54 (57)
224 1gk6_A Vimentin; intermediate 57.1 26 0.00088 26.1 5.9 45 271-315 3-47 (59)
225 4ath_A MITF, microphthalmia-as 57.1 19 0.00066 29.1 5.5 17 300-316 60-76 (83)
226 1s1c_X RHO-associated, coiled- 56.7 45 0.0015 26.2 7.4 31 272-302 3-33 (71)
227 1wlq_A Geminin; coiled-coil; 2 56.6 35 0.0012 27.7 6.9 28 269-296 39-66 (83)
228 3vkg_A Dynein heavy chain, cyt 56.6 58 0.002 40.9 11.9 32 282-313 2035-2066(3245)
229 4b4t_M 26S protease regulatory 56.0 10 0.00035 38.2 4.6 44 273-316 30-73 (434)
230 2b9c_A Striated-muscle alpha t 55.7 1E+02 0.0035 26.8 11.6 70 247-316 37-121 (147)
231 3vmx_A Voltage-gated hydrogen 55.6 57 0.002 24.0 7.2 29 268-296 11-39 (48)
232 2zvf_A Alanyl-tRNA synthetase; 55.5 14 0.00048 31.6 4.8 32 285-316 28-59 (171)
233 3trt_A Vimentin; cytoskeleton, 55.5 65 0.0022 24.4 8.9 42 274-315 34-75 (77)
234 1kd8_A GABH AIV, GCN4 acid bas 55.3 29 0.00099 24.1 5.3 27 287-313 6-32 (36)
235 1ses_A Seryl-tRNA synthetase; 55.3 1.3E+02 0.0045 29.9 12.5 17 299-315 67-83 (421)
236 1deq_A Fibrinogen (alpha chain 55.2 76 0.0026 32.1 10.5 18 241-258 60-77 (390)
237 3sja_C Golgi to ER traffic pro 54.7 27 0.00091 27.1 5.7 24 291-314 34-57 (65)
238 1ytz_T Troponin T; muscle, THI 54.6 94 0.0032 25.9 11.2 45 271-315 45-89 (107)
239 3mud_A DNA repair protein XRCC 54.4 41 0.0014 30.6 7.8 31 274-304 134-164 (175)
240 3q0x_A Centriole protein; cent 54.1 31 0.0011 32.4 7.2 41 272-312 175-215 (228)
241 2fic_A Bridging integrator 1; 54.1 49 0.0017 29.7 8.4 53 260-315 150-209 (251)
242 2wvr_A Geminin; DNA replicatio 53.9 37 0.0013 31.7 7.5 44 268-315 115-158 (209)
243 3plt_A Sphingolipid long chain 53.8 24 0.00082 33.4 6.4 63 248-315 94-157 (234)
244 2dq3_A Seryl-tRNA synthetase; 53.2 20 0.00067 35.9 6.1 27 288-314 74-100 (425)
245 1fzc_C Fibrin; blood coagulati 52.9 6.9 0.00024 38.4 2.7 45 268-312 4-48 (319)
246 3vkg_A Dynein heavy chain, cyt 52.8 56 0.0019 41.0 10.9 7 141-147 1649-1655(3245)
247 2yko_A LINE-1 ORF1P; RNA-bindi 52.8 23 0.00077 33.5 6.0 45 271-315 2-46 (233)
248 3ol1_A Vimentin; structural ge 52.7 1E+02 0.0034 25.7 12.2 35 281-315 68-102 (119)
249 3he4_A Synzip6; heterodimeric 52.6 43 0.0015 24.7 6.2 32 271-302 20-51 (56)
250 1zxa_A CGMP-dependent protein 52.4 21 0.0007 27.8 4.8 32 265-296 22-53 (67)
251 3e98_A GAF domain of unknown f 52.2 28 0.00095 32.5 6.6 30 270-299 81-113 (252)
252 2b5u_A Colicin E3; high resolu 52.2 96 0.0033 32.5 11.0 30 270-299 316-345 (551)
253 3w03_C DNA repair protein XRCC 51.2 45 0.0015 30.4 7.6 34 266-299 150-183 (184)
254 1m1j_C Fibrinogen gamma chain; 51.2 10 0.00035 38.3 3.7 46 271-316 87-132 (409)
255 4dk0_A Putative MACA; alpha-ha 51.1 87 0.003 29.2 9.9 23 292-314 125-147 (369)
256 2no2_A HIP-I, huntingtin-inter 51.1 1E+02 0.0036 25.4 11.7 42 275-316 54-95 (107)
257 3lss_A Seryl-tRNA synthetase; 51.0 48 0.0016 34.1 8.6 25 263-287 46-70 (484)
258 1fxk_A Prefoldin; archaeal pro 50.8 38 0.0013 26.7 6.4 30 286-315 69-98 (107)
259 2odv_A Plectin 1, HD1; plakin 50.4 1.3E+02 0.0044 27.8 10.8 37 243-279 99-135 (235)
260 3k29_A Putative uncharacterize 50.4 1.5E+02 0.005 26.9 12.2 16 246-261 32-47 (169)
261 2xu6_A MDV1 coiled coil; prote 50.0 41 0.0014 26.6 6.1 49 268-316 21-69 (72)
262 2i1j_A Moesin; FERM, coiled-co 49.9 13 0.00044 38.8 4.3 28 269-296 336-363 (575)
263 1gk6_A Vimentin; intermediate 49.5 77 0.0026 23.4 8.1 47 267-313 6-52 (59)
264 2pnv_A Small conductance calci 49.4 21 0.00072 25.5 4.0 25 272-296 13-37 (43)
265 3tq2_A KE1; parallel three hel 49.2 42 0.0014 22.8 5.3 31 285-315 4-34 (36)
266 2z5i_A TM, general control pro 49.2 62 0.0021 23.6 6.7 30 285-314 15-44 (52)
267 3ghg_C Fibrinogen gamma chain; 49.2 86 0.0029 31.8 10.0 62 280-341 96-158 (411)
268 2er8_A Regulatory protein Leu3 48.9 9.2 0.00031 28.2 2.3 22 267-288 48-69 (72)
269 3ljm_A Coil Ser L9C; de novo d 48.6 23 0.00077 23.5 3.7 26 292-317 4-29 (31)
270 3c3g_A Alpha/beta peptide with 48.5 36 0.0012 23.2 4.8 23 293-315 4-26 (33)
271 1m1j_C Fibrinogen gamma chain; 48.4 43 0.0015 33.8 7.7 8 368-375 231-238 (409)
272 4ath_A MITF, microphthalmia-as 47.7 39 0.0013 27.3 5.9 32 267-298 48-79 (83)
273 3he4_A Synzip6; heterodimeric 47.3 6.5 0.00022 29.0 1.1 36 281-316 16-51 (56)
274 2zxx_A Geminin; coiled-coil, c 47.2 50 0.0017 26.5 6.4 39 271-313 37-75 (79)
275 1ik9_A DNA repair protein XRCC 47.2 71 0.0024 29.4 8.4 34 271-304 135-168 (213)
276 3hhm_B NISH2 P85alpha; PI3KCA, 47.0 66 0.0023 31.9 8.7 46 270-315 207-252 (373)
277 3viq_B Mating-type switching p 47.0 1.1E+02 0.0039 24.7 9.0 16 301-316 53-68 (85)
278 3sjb_C Golgi to ER traffic pro 47.0 57 0.002 26.9 6.9 23 292-314 52-74 (93)
279 2dq0_A Seryl-tRNA synthetase; 46.5 34 0.0012 34.6 6.6 43 273-315 43-88 (455)
280 3c3f_A Alpha/beta peptide with 46.4 40 0.0014 23.1 4.8 23 293-315 5-27 (34)
281 1fzc_C Fibrin; blood coagulati 46.3 16 0.00054 35.8 4.1 42 275-316 4-45 (319)
282 1j1e_C Troponin I, TNI; THIN f 46.2 37 0.0013 30.9 6.2 46 271-316 61-106 (180)
283 3ni0_A Bone marrow stromal ant 45.8 1.3E+02 0.0044 25.0 9.8 22 295-316 66-87 (99)
284 2zdi_C Prefoldin subunit alpha 45.5 42 0.0014 28.6 6.2 37 272-308 102-138 (151)
285 3ra3_A P1C; coiled coil domain 45.4 11 0.00036 24.5 1.7 17 277-293 9-25 (28)
286 3jsv_C NF-kappa-B essential mo 45.1 85 0.0029 25.9 7.6 48 268-315 40-87 (94)
287 1x8y_A Lamin A/C; structural p 45.0 1.1E+02 0.0038 24.0 9.8 49 267-315 27-75 (86)
288 2l5g_B Putative uncharacterize 44.7 46 0.0016 23.8 5.2 28 288-315 8-35 (42)
289 1lwu_B Fibrinogen beta chain; 44.7 43 0.0015 32.7 6.8 10 332-341 72-81 (323)
290 2wq1_A General control protein 44.5 45 0.0015 22.8 4.8 24 287-310 5-28 (33)
291 3q4f_C DNA repair protein XRCC 44.1 40 0.0014 30.9 6.0 22 275-296 161-182 (186)
292 4dzo_A Mitotic spindle assembl 44.1 42 0.0014 28.5 5.9 27 268-294 4-30 (123)
293 4ani_A Protein GRPE; chaperone 44.1 48 0.0016 30.7 6.7 15 274-288 65-79 (213)
294 3gp4_A Transcriptional regulat 43.5 90 0.0031 26.4 7.9 11 242-252 42-52 (142)
295 3m0a_A TNF receptor-associated 43.4 96 0.0033 22.8 8.2 36 271-306 8-43 (66)
296 3gp4_A Transcriptional regulat 42.9 1.5E+02 0.0052 24.9 9.6 8 277-284 90-97 (142)
297 2aze_A Transcription factor DP 42.9 61 0.0021 28.9 6.9 15 264-278 22-36 (155)
298 1fxk_C Protein (prefoldin); ar 42.7 80 0.0027 26.0 7.4 39 271-309 91-129 (133)
299 2wg5_A General control protein 42.6 21 0.00072 29.4 3.7 25 292-316 10-34 (109)
300 3qne_A Seryl-tRNA synthetase, 42.5 48 0.0016 34.2 7.1 22 272-293 44-65 (485)
301 3ol1_A Vimentin; structural ge 42.4 1.5E+02 0.005 24.7 11.8 15 239-253 15-29 (119)
302 2l5g_B Putative uncharacterize 42.3 52 0.0018 23.6 5.1 33 271-303 5-37 (42)
303 1uo4_A General control protein 41.6 41 0.0014 23.1 4.3 23 293-315 5-27 (34)
304 2hy6_A General control protein 41.6 48 0.0016 22.8 4.6 24 287-310 6-29 (34)
305 1ykh_B RNA polymerase II holoe 41.4 43 0.0015 28.6 5.6 20 275-294 92-111 (132)
306 3mov_A Lamin-B1; LMNB1, B-type 41.4 1.4E+02 0.0048 24.2 9.3 47 269-315 38-84 (95)
307 4b4t_L 26S protease subunit RP 41.1 27 0.00092 35.2 4.9 24 293-316 76-99 (437)
308 3rrk_A V-type ATPase 116 kDa s 40.9 56 0.0019 30.9 6.9 28 284-311 101-128 (357)
309 4b4t_J 26S protease regulatory 40.8 29 0.001 34.8 5.1 41 269-316 26-66 (405)
310 3lss_A Seryl-tRNA synthetase; 40.7 1.6E+02 0.0055 30.2 10.6 22 272-293 48-69 (484)
311 2bni_A General control protein 40.6 39 0.0013 23.2 4.1 23 293-315 5-27 (34)
312 2k48_A Nucleoprotein; viral pr 40.2 1.5E+02 0.005 25.0 8.4 14 301-314 87-100 (107)
313 1yke_B RNA polymerase II holoe 39.8 57 0.0019 28.6 6.2 22 275-296 92-113 (151)
314 3p7i_A PHND, subunit of alkylp 39.6 21 0.00071 33.6 3.6 54 236-289 259-312 (321)
315 3fpp_A Macrolide-specific effl 39.4 1.8E+02 0.006 26.8 9.9 24 291-314 116-139 (341)
316 3tq7_B Microtubule-associated 39.3 54 0.0018 26.3 5.4 48 268-315 8-55 (82)
317 2lq4_p Lysophosphatidic acid r 39.0 6.4 0.00022 30.8 -0.0 44 270-313 15-79 (80)
318 1dkg_A Nucleotide exchange fac 38.8 84 0.0029 28.5 7.4 8 368-375 151-158 (197)
319 3plt_A Sphingolipid long chain 38.8 1.6E+02 0.0053 27.9 9.4 29 269-297 132-160 (234)
320 3rrk_A V-type ATPase 116 kDa s 38.7 1E+02 0.0035 29.1 8.3 28 270-297 228-255 (357)
321 2gkw_A TNF receptor-associated 38.3 50 0.0017 28.9 5.7 33 271-303 3-35 (192)
322 2e7s_A RAB guanine nucleotide 38.2 35 0.0012 29.8 4.5 48 269-316 33-80 (135)
323 3l4q_C Phosphatidylinositol 3- 37.9 1.1E+02 0.0038 27.5 7.9 43 272-314 114-156 (170)
324 4dk0_A Putative MACA; alpha-ha 37.8 46 0.0016 31.1 5.7 37 279-315 119-155 (369)
325 1vcs_A Vesicle transport throu 37.6 1.3E+02 0.0043 24.3 7.6 52 265-316 35-94 (102)
326 1zxa_A CGMP-dependent protein 37.2 48 0.0016 25.8 4.7 15 301-315 37-51 (67)
327 2r2v_A GCN4 leucine zipper; co 36.8 69 0.0024 22.0 4.8 26 287-312 6-31 (34)
328 2z5i_A TM, general control pro 36.7 1.2E+02 0.0041 22.1 6.6 35 257-291 8-42 (52)
329 3iox_A AGI/II, PA; alpha helix 36.4 1E+02 0.0035 32.1 8.3 28 270-297 36-63 (497)
330 1gk4_A Vimentin; intermediate 36.2 1.5E+02 0.0052 23.1 11.1 51 265-315 23-73 (84)
331 2q6q_A Spindle POLE BODY compo 36.1 1.6E+02 0.0054 23.2 7.5 43 272-314 7-49 (74)
332 2lw1_A ABC transporter ATP-bin 36.0 1.1E+02 0.0037 24.0 6.8 48 268-315 29-82 (89)
333 2ke4_A CDC42-interacting prote 35.9 1.8E+02 0.0061 23.7 8.6 29 287-315 60-88 (98)
334 3zwh_Q Myosin-9; Ca-binding pr 35.9 15 0.00051 26.6 1.5 22 268-289 6-27 (45)
335 1lrz_A FEMA, factor essential 35.5 1.1E+02 0.0038 29.8 8.3 48 268-315 247-300 (426)
336 2p22_A Suppressor protein STP2 35.4 66 0.0023 29.0 6.0 38 276-313 50-87 (174)
337 1t3j_A Mitofusin 1; coiled coi 35.2 1.3E+02 0.0043 24.9 7.2 41 271-315 50-90 (96)
338 1l8d_A DNA double-strand break 35.1 1.7E+02 0.0057 23.2 11.3 13 268-280 31-43 (112)
339 2akf_A Coronin-1A; coiled coil 35.1 88 0.003 21.0 5.0 23 273-295 4-26 (32)
340 1a93_A Coiled coil, LZ, MYC pr 35.0 70 0.0024 21.9 4.6 24 292-315 10-33 (34)
341 4b4t_L 26S protease subunit RP 34.8 39 0.0013 34.1 4.9 29 281-309 71-99 (437)
342 1l8d_A DNA double-strand break 34.3 1.7E+02 0.0059 23.1 10.8 37 277-313 66-102 (112)
343 2yo3_A General control protein 34.2 1.1E+02 0.0037 29.5 7.6 56 258-313 206-261 (268)
344 2w6b_A RHO guanine nucleotide 34.1 1.5E+02 0.0051 22.3 7.1 22 272-293 14-35 (56)
345 2j69_A Bacterial dynamin-like 34.0 1E+02 0.0034 32.5 8.1 44 273-316 350-393 (695)
346 2xnx_M M protein, M1-BC1; cell 33.8 1.8E+02 0.0062 25.7 8.4 27 285-311 69-95 (146)
347 3v86_A De novo design helix; c 33.5 75 0.0026 20.4 4.3 18 274-291 6-23 (27)
348 4e61_A Protein BIM1; EB1-like 33.1 2.1E+02 0.0071 24.0 8.3 28 269-296 12-39 (106)
349 3onj_A T-snare VTI1; helix, HA 33.1 1.9E+02 0.0064 23.1 8.0 23 293-315 69-92 (97)
350 3swy_A Cyclic nucleotide-gated 32.9 1.4E+02 0.0046 21.6 6.2 23 270-292 7-29 (46)
351 2wg5_A General control protein 32.9 30 0.001 28.4 3.2 33 289-323 14-46 (109)
352 2xzr_A Immunoglobulin-binding 32.9 1.5E+02 0.005 24.9 7.2 45 268-312 62-106 (114)
353 2p22_A Suppressor protein STP2 32.9 1.2E+02 0.0039 27.4 7.2 56 261-316 27-83 (174)
354 3q4f_C DNA repair protein XRCC 32.8 68 0.0023 29.4 5.7 25 267-291 160-184 (186)
355 3m0d_C TNF receptor-associated 32.8 1.5E+02 0.0053 22.1 8.6 36 269-304 7-42 (65)
356 4fi5_A Nucleoprotein; structur 32.6 1.8E+02 0.0063 24.7 7.9 17 299-315 72-88 (113)
357 3a5t_A Transcription factor MA 32.6 5.6 0.00019 33.5 -1.4 28 287-314 63-90 (107)
358 4b4t_J 26S protease regulatory 32.4 65 0.0022 32.3 6.1 21 276-296 40-60 (405)
359 3tnu_B Keratin, type II cytosk 32.4 2.2E+02 0.0074 23.7 11.6 12 243-254 35-46 (129)
360 1qvr_A CLPB protein; coiled co 32.3 1.8E+02 0.0061 31.0 9.8 19 266-284 399-417 (854)
361 1m1j_B Fibrinogen beta chain; 32.0 3.3E+02 0.011 27.9 11.2 27 289-315 168-194 (464)
362 3ghg_C Fibrinogen gamma chain; 31.7 51 0.0017 33.4 5.2 45 268-312 91-135 (411)
363 3vem_A Helicase protein MOM1; 31.7 2.4E+02 0.0083 24.0 11.3 32 261-292 54-85 (115)
364 2aze_B Transcription factor E2 31.3 80 0.0027 26.1 5.5 25 274-298 12-36 (106)
365 1x8y_A Lamin A/C; structural p 31.1 1.9E+02 0.0066 22.7 9.3 48 266-313 33-80 (86)
366 2zdi_C Prefoldin subunit alpha 30.7 1.3E+02 0.0043 25.5 6.9 33 271-303 108-140 (151)
367 4ati_A MITF, microphthalmia-as 30.4 30 0.001 29.0 2.8 35 268-302 74-111 (118)
368 2ic9_A Nucleocapsid protein; h 30.4 2.2E+02 0.0077 23.5 7.9 14 301-314 57-70 (96)
369 2zqm_A Prefoldin beta subunit 30.3 2E+02 0.0069 22.7 12.1 34 283-316 71-104 (117)
370 1j1d_B Troponin T, TNT; THIN f 29.8 2.4E+02 0.0082 23.4 9.4 45 271-315 45-89 (106)
371 3n7n_E Monopolin complex subun 29.8 11 0.00038 31.2 0.0 36 278-313 39-74 (95)
372 1lq7_A Alpha3W; three helix bu 29.7 1.8E+02 0.0062 22.0 7.1 12 302-313 54-65 (67)
373 3okq_A BUD site selection prot 29.6 2.9E+02 0.0099 24.2 10.0 59 255-313 8-78 (141)
374 2ic6_A Nucleocapsid protein; h 29.5 2.2E+02 0.0074 22.8 7.9 24 270-293 7-30 (78)
375 1d7m_A Cortexillin I; coiled-c 29.5 2.4E+02 0.0082 23.3 8.4 39 260-298 17-55 (101)
376 2ve7_A Kinetochore protein HEC 29.4 52 0.0018 31.7 4.6 30 267-296 184-213 (315)
377 3swf_A CGMP-gated cation chann 29.4 1E+02 0.0034 24.5 5.4 28 268-295 7-34 (74)
378 3n5l_A Binding protein compone 29.1 70 0.0024 29.6 5.3 52 238-289 252-303 (310)
379 3kin_B Kinesin heavy chain; mo 29.1 80 0.0027 26.3 5.2 13 270-282 98-110 (117)
380 4h10_A ARYL hydrocarbon recept 29.0 1.2E+02 0.004 23.5 5.7 34 247-280 5-38 (73)
381 2qyw_A Vesicle transport throu 28.7 2.3E+02 0.0079 22.8 9.9 56 239-294 17-75 (102)
382 3cl3_D NF-kappa-B essential mo 28.6 19 0.00065 31.4 1.2 50 262-314 24-73 (130)
383 3viq_B Mating-type switching p 28.6 2.3E+02 0.008 22.8 7.9 23 272-294 5-27 (85)
384 2pnv_A Small conductance calci 28.5 72 0.0025 22.8 4.0 16 281-296 15-30 (43)
385 3qwe_A GMIP, GEM-interacting p 28.5 4E+02 0.014 25.5 11.7 68 258-325 134-223 (279)
386 1ytz_T Troponin T; muscle, THI 28.4 1.5E+02 0.0052 24.6 6.7 18 280-297 47-64 (107)
387 2aze_B Transcription factor E2 28.2 1.3E+02 0.0046 24.7 6.3 34 276-309 7-40 (106)
388 2w6b_A RHO guanine nucleotide 28.1 1.2E+02 0.004 22.9 5.3 28 287-314 8-35 (56)
389 1hwt_C Protein (heme activator 27.9 32 0.0011 25.6 2.3 23 265-287 55-77 (81)
390 1flk_A TNF receptor associated 27.6 67 0.0023 29.0 4.8 31 273-303 41-71 (228)
391 2aze_A Transcription factor DP 27.5 1.5E+02 0.0052 26.3 6.9 39 275-313 5-43 (155)
392 4gkw_A Spindle assembly abnorm 27.4 3.2E+02 0.011 24.1 10.1 20 275-294 46-65 (167)
393 3gwk_C SAG1039, putative uncha 27.4 1.3E+02 0.0045 22.8 5.9 10 271-280 32-41 (98)
394 2lf0_A Uncharacterized protein 27.2 94 0.0032 26.8 5.3 14 247-260 9-22 (123)
395 2yko_A LINE-1 ORF1P; RNA-bindi 27.1 1.3E+02 0.0046 28.3 6.8 44 270-313 8-51 (233)
396 3okq_A BUD site selection prot 27.1 2E+02 0.0067 25.3 7.4 12 270-281 30-41 (141)
397 1gax_A Valrs, valyl-tRNA synth 26.9 1E+02 0.0035 33.6 6.8 29 30-65 398-427 (862)
398 4b4t_M 26S protease regulatory 26.8 43 0.0015 33.7 3.6 36 273-308 37-72 (434)
399 1ykh_B RNA polymerase II holoe 26.7 1.6E+02 0.0054 25.0 6.7 27 287-313 97-123 (132)
400 4gif_A Polycystic kidney disea 26.5 1.7E+02 0.0057 21.2 5.7 33 268-300 7-39 (45)
401 4ad8_A DNA repair protein RECN 26.5 2E+02 0.0067 28.7 8.4 45 250-294 189-239 (517)
402 3pik_A Cation efflux system pr 26.4 4E+02 0.014 24.8 11.4 37 258-294 341-377 (446)
403 2fic_A Bridging integrator 1; 26.3 2.6E+02 0.0089 24.9 8.5 24 272-295 187-210 (251)
404 1dkg_A Nucleotide exchange fac 26.2 1.3E+02 0.0044 27.3 6.4 14 298-311 62-75 (197)
405 1cii_A Colicin IA; bacteriocin 26.1 5.6E+02 0.019 26.9 11.6 37 255-293 345-381 (602)
406 4aj5_1 SKA3, spindle and kinet 26.1 2.9E+02 0.0098 23.1 9.3 49 243-293 19-67 (101)
407 3mud_A DNA repair protein XRCC 25.8 1.2E+02 0.0043 27.4 6.1 34 259-292 133-166 (175)
408 2js5_A Uncharacterized protein 25.7 2.4E+02 0.0083 22.1 7.9 27 290-316 39-65 (71)
409 1fmh_B General control protein 25.3 86 0.0029 21.0 3.7 26 291-316 3-28 (33)
410 3brv_B NF-kappa-B essential mo 25.2 2.5E+02 0.0085 22.0 7.5 13 282-294 26-38 (70)
411 1yke_B RNA polymerase II holoe 25.1 1.7E+02 0.006 25.4 6.8 34 282-315 92-125 (151)
412 1rtm_1 Mannose-binding protein 24.7 83 0.0028 25.6 4.5 15 270-284 6-20 (149)
413 1j1d_C Troponin I, TNI; THIN f 24.6 1.8E+02 0.0061 25.2 6.6 27 286-312 62-88 (133)
414 3pik_A Cation efflux system pr 24.5 4.3E+02 0.015 24.6 10.3 30 271-300 347-376 (446)
415 2ocy_A RAB guanine nucleotide 24.5 3.7E+02 0.013 23.8 11.7 33 283-315 109-141 (154)
416 3ibp_A Chromosome partition pr 24.4 3.2E+02 0.011 26.7 9.1 19 270-288 226-244 (302)
417 3vlc_E Golgi to ER traffic pro 24.4 74 0.0025 26.3 4.0 23 292-314 59-81 (94)
418 3t97_B Nuclear pore complex pr 24.3 1.9E+02 0.0065 22.3 6.0 36 267-302 9-44 (65)
419 4i0x_B ESAT-6-like protein MAB 24.2 1.7E+02 0.0057 22.9 6.0 15 269-283 33-47 (103)
420 3iyn_Q Protein IX, PIX, hexon- 24.2 48 0.0016 28.9 2.9 21 274-294 104-124 (140)
421 1f5n_A Interferon-induced guan 24.1 5.6E+02 0.019 26.7 11.6 6 60-65 77-82 (592)
422 3p8q_A GP5, head protein; viru 24.0 16 0.00056 35.6 0.0 25 272-296 38-62 (385)
423 2xus_A Breast cancer metastasi 23.7 2.2E+02 0.0075 20.9 6.0 24 264-291 6-29 (49)
424 3swk_A Vimentin; cytoskeleton, 23.6 2.7E+02 0.0093 21.9 10.0 31 283-313 50-80 (86)
425 1fxk_A Prefoldin; archaeal pro 23.5 2.6E+02 0.0089 21.7 11.6 36 279-314 69-104 (107)
426 1no4_A Late, head morphogenesi 23.4 2.7E+02 0.0093 22.6 7.0 35 277-311 28-62 (97)
427 2xus_A Breast cancer metastasi 23.2 2.2E+02 0.0077 20.8 6.1 35 280-316 11-45 (49)
428 4ghu_A TNF receptor-associated 23.1 1.1E+02 0.0036 27.2 5.2 31 272-302 4-34 (198)
429 3u0c_A Invasin IPAB, 62 kDa an 23.0 4.4E+02 0.015 24.1 11.1 73 246-318 70-146 (201)
430 3pjs_K KCSA, voltage-gated pot 22.8 1.6E+02 0.0054 25.2 6.1 21 268-288 138-158 (166)
431 3zbh_A ESXA; unknown function, 22.8 1.8E+02 0.0063 21.6 5.9 11 270-280 32-42 (99)
432 2f1m_A Acriflavine resistance 22.7 1.6E+02 0.0055 26.3 6.4 28 288-315 104-131 (277)
433 3csx_A Putative uncharacterize 22.7 2.1E+02 0.0071 23.0 6.2 28 289-316 50-77 (81)
434 2gd5_A Charged multivesicular 22.6 1.4E+02 0.0046 26.2 5.7 10 367-376 158-167 (179)
435 2i1j_A Moesin; FERM, coiled-co 22.6 49 0.0017 34.4 3.3 6 35-40 130-135 (575)
436 4f3l_B BMAL1B; BHLH, PAS, circ 22.5 51 0.0017 31.8 3.2 38 243-280 5-42 (387)
437 4g2k_A General control protein 22.5 1.7E+02 0.0058 25.3 6.0 9 354-362 98-106 (125)
438 1r8e_A Multidrug-efflux transp 22.5 2.2E+02 0.0074 25.5 7.2 11 286-296 90-100 (278)
439 1zhc_A Hypothetical protein HP 22.4 80 0.0028 24.5 3.7 18 290-307 45-62 (76)
440 1j1d_B Troponin T, TNT; THIN f 22.4 1.7E+02 0.006 24.3 6.0 22 287-308 47-68 (106)
441 3eff_K Voltage-gated potassium 22.3 2E+02 0.007 23.5 6.5 10 272-281 115-124 (139)
442 4ioe_A Secreted protein ESXB; 22.1 1.3E+02 0.0045 22.4 4.8 12 269-280 31-42 (93)
443 2dq3_A Seryl-tRNA synthetase; 21.9 35 0.0012 34.1 1.9 18 275-292 44-61 (425)
444 1gk7_A Vimentin; intermediate 21.8 1.5E+02 0.0051 20.5 4.6 18 275-292 20-37 (39)
445 3aon_A V-type sodium ATPase su 21.7 3.4E+02 0.012 24.5 8.4 35 270-304 33-67 (217)
446 1fzc_B Fibrin; blood coagulati 21.6 46 0.0016 32.5 2.6 10 332-341 74-83 (328)
447 3frt_A Charged multivesicular 21.6 1.8E+02 0.0061 26.8 6.5 9 307-315 75-83 (218)
448 1urq_A M-tomosyn isoform; tran 21.6 1.7E+02 0.0058 22.0 5.3 32 266-297 30-61 (63)
449 3f6n_A Virion-associated prote 21.5 3.9E+02 0.014 23.0 8.4 25 271-295 5-29 (129)
450 1lwu_B Fibrinogen beta chain; 21.5 1.4E+02 0.0047 29.2 6.0 8 368-375 161-168 (323)
451 3l4f_A RHO guanine nucleotide 21.3 2.8E+02 0.0095 21.2 6.9 43 272-314 11-53 (61)
452 2qag_B Septin-6, protein NEDD5 21.3 20 0.00068 36.1 0.0 14 291-304 379-392 (427)
453 3mov_A Lamin-B1; LMNB1, B-type 21.3 3.2E+02 0.011 22.0 8.6 42 268-309 44-85 (95)
454 1avy_A Fibritin, gpwac M; bact 21.2 1.4E+02 0.0049 23.6 4.8 37 273-309 6-42 (74)
455 1a93_A Coiled coil, LZ, MYC pr 21.2 1.3E+02 0.0045 20.5 4.1 18 276-293 15-32 (34)
456 3rvy_A ION transport protein; 20.9 21 0.0007 32.7 0.0 19 270-288 258-276 (285)
457 1a92_A Delta antigen; leucine 20.9 2E+02 0.007 21.2 5.3 20 286-305 18-37 (50)
458 3he4_B Synzip5; heterodimeric 20.8 2.3E+02 0.0079 20.1 6.6 10 277-286 12-21 (46)
459 3hhm_B NISH2 P85alpha; PI3KCA, 20.8 2.7E+02 0.0093 27.4 8.0 38 278-315 208-245 (373)
460 3gpv_A Transcriptional regulat 20.8 1.5E+02 0.0051 25.0 5.4 29 287-315 100-128 (148)
461 3sjd_D Golgi to ER traffic pro 20.7 81 0.0028 22.9 3.1 30 236-265 12-41 (46)
462 4fm3_A Uncharacterized hypothe 20.7 3.1E+02 0.011 22.6 7.1 26 272-297 61-86 (98)
463 3tq2_A KE1; parallel three hel 20.6 2.1E+02 0.0071 19.4 5.5 31 271-301 4-34 (36)
464 1cii_A Colicin IA; bacteriocin 20.5 5E+02 0.017 27.2 10.0 47 263-309 358-404 (602)
465 2f1m_A Acriflavine resistance 20.4 1.9E+02 0.0064 25.8 6.3 29 288-316 97-125 (277)
466 2efr_A General control protein 20.3 4.4E+02 0.015 23.1 11.2 9 273-281 75-83 (155)
467 2vs0_A Virulence factor ESXA; 20.3 2.3E+02 0.0077 21.0 5.9 10 271-280 30-39 (97)
468 3gpv_A Transcriptional regulat 20.2 2E+02 0.0068 24.3 6.1 35 277-311 97-131 (148)
469 3iyn_Q Protein IX, PIX, hexon- 20.2 1.6E+02 0.0054 25.7 5.3 15 286-300 109-123 (140)
470 4a17_U RPL35, 60S ribosomal pr 20.0 2.5E+02 0.0086 24.0 6.6 53 270-322 15-72 (124)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=1.4e-14 Score=109.13 Aligned_cols=52 Identities=37% Similarity=0.470 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
||++|+++||+||++||.||++|+++||.+|..|+.||..|..++..|+++|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999987765
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.41 E-value=9.8e-13 Score=101.03 Aligned_cols=56 Identities=34% Similarity=0.528 Sum_probs=51.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999988877665554
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.38 E-value=1.5e-12 Score=99.05 Aligned_cols=56 Identities=30% Similarity=0.463 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999988866554443
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.33 E-value=2.6e-12 Score=98.18 Aligned_cols=55 Identities=38% Similarity=0.485 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
|++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|++++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999998876654443
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.32 E-value=2.3e-12 Score=99.47 Aligned_cols=51 Identities=33% Similarity=0.492 Sum_probs=44.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 11 ~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445999999999999999999999999999999999999999887653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.16 E-value=6.6e-11 Score=91.08 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=47.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+|+.+++++||.||+|||.||++++++|+.+++.|+.+|..|..+|..|+. |+..|+.-|.
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~-------E~~~Lk~ll~ 61 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK-------EIQYLKDLIE 61 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 368889999999999999999999999999999999999999998888755 5555555543
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.11 E-value=1.9e-10 Score=90.72 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=56.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 249 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 249 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
.||+..||+|+|.+|.||++|+.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999999999999999999999999988775
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.89 E-value=5.9e-09 Score=85.34 Aligned_cols=62 Identities=29% Similarity=0.344 Sum_probs=51.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+...|+.+|.+||+|||.++++...+++.+|+.|+.||..|+.+|..|+. |+..|+..|..+
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-------E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------ELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence 35566778999999999999999999999999999999999999988766 455555555543
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.87 E-value=7.2e-09 Score=83.24 Aligned_cols=55 Identities=31% Similarity=0.385 Sum_probs=47.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 248 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 248 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
...|+.+|.+||+|||.++++...+++.+|..|+.||..|+.+|..|+.++..|+
T Consensus 16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778999999999999999999999999999999999999998766555443
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.78 E-value=1.5e-10 Score=97.93 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.++..++|.+||+++||.+|++||.||.+++++||.++..|..+...|..|+..|+.++
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~ 88 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLEL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999777666665555555544444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.49 E-value=7e-07 Score=73.57 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=53.4
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 240 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-++-..+|..||.++||.+|+-||.||.++..+||.++..|..+...|+.++..+.. |...+++++..|
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L 88 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 345678999999999999999999999999999988888777776666666666554 555556655544
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00013 Score=52.48 Aligned_cols=40 Identities=33% Similarity=0.446 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
|+|+.+||.++..|+..|.+|..++..| ..||..||+.|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHhc
Confidence 5899999999999999999999888886 568999998876
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=97.06 E-value=0.0026 Score=47.56 Aligned_cols=47 Identities=32% Similarity=0.435 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.|-++|+.|+.||..|++|++.=..++.+|+.|-.-+|+-++.+|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999876
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.62 E-value=0.0009 Score=55.21 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016610 244 RELKRERRKQSNRESARRSRLRKQAEAEELSR 275 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlRKqa~leeLE~ 275 (386)
..+|..||+.+||.+|++||.||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45667899999999999999999999988764
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.76 E-value=0.036 Score=42.68 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
+..-|.+|.+|.+-|..|.+|+..|+.++..|.+||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34557789999999999999999999999999999999984
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.76 E-value=0.037 Score=46.44 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~-------el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.-=-+++-+||.+++.|+.||..|+. +|..|..++++|+.||..|+.+-+.-+
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345667899999999999988887 788888999999999999988877643
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.61 E-value=0.052 Score=43.95 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.-|+.+++.|+.+|..|..++..++.....|..||..|+++....+
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777778888888888877654
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.39 E-value=0.068 Score=46.60 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..|+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777664
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.00 E-value=0.25 Score=49.80 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++.+.|++|...|+++++..+++..+|..|+..++++|+.+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444443
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.94 E-value=0.025 Score=38.76 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+..||.+|+.|-.+|..|..|+.+|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999999876
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.93 E-value=0.091 Score=37.98 Aligned_cols=44 Identities=30% Similarity=0.319 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+..|+.+|..|+.||..|+++.---+.-+.-|+.|...||.+|.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999999999888778888889999999988874
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.87 E-value=0.069 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 016610 295 SENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 295 ~ee~~~L~sEN~~LkeqL~~lql 317 (386)
++.+.+|+.|+..||.+|..++.
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666677777788877776654
No 23
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.86 E-value=0.13 Score=39.17 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 251 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 288 (386)
Q Consensus 251 Rk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr 288 (386)
.+-+||.++|+||.|=+..++....-...-.+||..|+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 34459999999999988776665544444444444433
No 24
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.67 E-value=0.044 Score=37.72 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
++..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57889999999999999999999998763
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.46 E-value=0.071 Score=37.12 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
++..||.+|+.|-.+|..|..++.+|++-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999877543
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.61 Score=41.65 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 244 RELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.+..++..+.+.+-++.-....+++.+-..-++.|..|...|.-++..+.+++.+|+.||..|-+++..-
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555556667777788889999999999999999999999999999999888753
No 27
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.20 E-value=0.061 Score=37.44 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
++..||.+|+.|..+|..|..++.+|++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999877543
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.06 E-value=0.32 Score=42.33 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.+++++.++..|+.++..++.++..+.+++.+|+.++..|..++..|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666654
No 29
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.80 E-value=0.24 Score=36.59 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++++..|+.-|..|..++..|+..|.+++.|+..|+.-|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999988875
No 30
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=93.72 E-value=0.091 Score=36.14 Aligned_cols=29 Identities=7% Similarity=0.243 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
++..||.+|+.|-.+|..|..|+.+|+.-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57889999999999999999999998763
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.72 E-value=0.32 Score=39.36 Aligned_cols=39 Identities=36% Similarity=0.404 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
-++.|+.||..+-..+.-|+-++..|+++...|..||..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555555555555555555555555
No 32
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=93.68 E-value=0.17 Score=40.34 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
+++++||.++..++.-...|...|.+...++..|+.+...|.++|++++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46889999999999999999999999999999999999999999988763
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.21 E-value=0.51 Score=35.28 Aligned_cols=38 Identities=34% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
..+..|+.+...|..++..|..++..|+.|+..|+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677777777777777777777777777776655
No 34
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=93.19 E-value=0.21 Score=37.88 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++++..|++-|-.|..+++.|+.+|.+.+.|+..|..-|++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999988875
No 35
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.17 E-value=0.15 Score=40.96 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++++..+++.|+.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888877776
No 36
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.11 E-value=0.13 Score=35.16 Aligned_cols=28 Identities=4% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+..||.+|+.|-.+|..|..|+.+|+.-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5789999999999999999999998763
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.03 E-value=0.066 Score=51.18 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+.+|+.+++.|...|..|..++..+++ |...|+++|+.|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~-------El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 34555666666666666666665555555 5555555555553
No 38
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.02 E-value=0.11 Score=35.84 Aligned_cols=29 Identities=7% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++..||.+|+.|-.+|..|..|+.+|++
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35678999999999999999999999876
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.96 E-value=0.55 Score=47.27 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+-.+.+..++++.+.++.++..++++++.++++++.++.|...|+.++++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 4445556677777888888888888888888888887777877777777664
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.88 E-value=0.12 Score=35.68 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999999876
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=92.71 E-value=0.52 Score=40.57 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.+|+.|+.|+..|..+|..+..++++|+.+|..|..+|..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 33466666677777777777777777777777777766654
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.69 E-value=0.33 Score=36.90 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++|+.+...|+.+...|..|+..|++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 43
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=92.58 E-value=0.16 Score=34.99 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
++..||.+|+.|-.+|..|..++.+|++-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999998763
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.44 E-value=0.73 Score=51.55 Aligned_cols=16 Identities=19% Similarity=0.327 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016610 300 KLRQENAALLEKLKSA 315 (386)
Q Consensus 300 ~L~sEN~~LkeqL~~l 315 (386)
.|+.||..|++++.++
T Consensus 1027 ~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 45
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.33 E-value=0.52 Score=34.97 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 307 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~ 307 (386)
+.+|..++..|.+.|..|...+...++++..|..|...
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655555544444433
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.30 E-value=0.2 Score=34.31 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999999998876
No 47
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.15 E-value=0.55 Score=34.87 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.++..|+.++..|..++.+|.+-+...+.|...|+++|..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778888888888888888888888888888888888765
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.88 E-value=0.61 Score=36.90 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.++..+++.++.+|..|..+|..|++.++.-+.+-..++.+|+.+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888877777777777777765
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.85 E-value=1.5 Score=33.06 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
+..|+.+...|..+...|..++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555544
No 50
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.33 E-value=0.016 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 016610 244 RELKRERRKQSNRESARRSRLRKQA 268 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlRKqa 268 (386)
..++..||+.+||.+|++||.||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3467789999999999999999854
No 51
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=91.18 E-value=0.36 Score=44.44 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhhcccccCCCCcchHHHhhhccCCC
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLNEDKRVTPVSTENLLSRVNNSG 347 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq--l~~~~Ev~~~~~~~~~p~~~e~lls~vd~~~ 347 (386)
++.-..-|..|..||..|..++....+++..|+.+.+.|++++...+ +....|-+. -+++|++.+...-
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~---------i~~DL~e~LTGl~ 85 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE---------VIKDLYEYLCNVR 85 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh---------HHHHHHHHccCcE
Confidence 33334446666777777777777766666666666666666665442 222223222 2777877775554
Q ss_pred CCcCcccccccccc
Q 016610 348 TVDRNMEEGGHLFE 361 (386)
Q Consensus 348 ~~~~~~~~~~~~~~ 361 (386)
-.+.-..+++.+|.
T Consensus 86 V~~~~ed~~~~~FD 99 (190)
T 4emc_A 86 VHKSYEDDSGLWFD 99 (190)
T ss_dssp CCCCCCCSSCEEEE
T ss_pred EEEEEEcCCCeEEE
Confidence 44433334444443
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.13 E-value=0.63 Score=34.97 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
.+..|+.+...|..+...|..++..|+.|+..|+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.84 E-value=0.58 Score=37.68 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..--.||..|..+|..+.+++..|+.||..|++-+...+
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344468899999999999999999999999988777654
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.77 E-value=0.44 Score=35.43 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
..|+.|+.||..|+.++..| ..++..|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L-------~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAI-------VEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 34555555555555555554 445555555554
No 55
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=90.72 E-value=0.36 Score=33.67 Aligned_cols=30 Identities=37% Similarity=0.550 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 281 IDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 281 e~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
-.||..|..+|..-.+++..|+.||..|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368999999999999999999999998864
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.69 E-value=0.36 Score=35.87 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.|..+++.|+.++..|..++..|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 57
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=90.65 E-value=0.92 Score=36.86 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..--.||..|..+|..|.+++..|+.+|..|++-....|
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457888888888888888888888888887766544
No 58
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.06 E-value=1.2 Score=37.55 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++-|..+++.++.....|+.++....++++.+...+..|+.++..+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555554
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=89.57 E-value=1.2 Score=34.84 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
...|..++..|..++..|+.+|..|+++|..|+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777777778888888888887653
No 60
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=89.13 E-value=0.92 Score=37.25 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|..++..|..+.+.|..||..+..++..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666777777776655
No 61
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=88.78 E-value=2.3 Score=31.60 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+.+++|..+|..|..+...|..++..|+..+.....|-..-.++|.+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34677777777777777777777777777766666666666555543
No 62
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=88.52 E-value=0.71 Score=37.03 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~-------~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+-.+|+.|-.||.+|.+.-. .|..++++|..|+..|+.+|..+
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455555555555554333 23345555555555555555554
No 63
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=88.34 E-value=0.57 Score=31.44 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+..|+.+|.+.+.||-.|.+++.+|..+|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 55678888888888888888887776554
No 64
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.34 E-value=1.4 Score=35.74 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..--.||..|..+|..+.+++..|+.||..|++-....
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888888888888888888888887765543
No 65
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.96 E-value=3.4 Score=30.25 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566555555555555555555554
No 66
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=87.93 E-value=0.77 Score=31.63 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999999999888865
No 67
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.90 E-value=2 Score=34.17 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
++.+-+.++..|+....--.+..++|..++-.|--||..|.++|..++.
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3444445555555555555556778888888899999999999988753
No 68
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.89 E-value=2.3 Score=33.28 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+|+.....|..||..|+.+|..|..++
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.80 E-value=6.8 Score=33.40 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
...-+.++.+|+.+|..|+.+...-+.. ...+..||..|+.++..++
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665555544 4445566666777666653
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=87.73 E-value=2.2 Score=34.19 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
...|..+...|..+...|+.+|..|+.+|..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777777777888889999999998875
No 71
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=87.32 E-value=1.6 Score=40.77 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.--.||..|..+|..|.+++..|+.||..|++-+..+|
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777777777777777777777666554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.29 E-value=5.8 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++++....+.+++.|+++.++++.++..|..+|.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3333333333444444433333333333333333
No 73
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.11 E-value=6.7 Score=31.72 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
|=.||-.+-.|-|+ -+..++...+..|..+.+++.....++..|..|...|+.++.+|+...
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44555555544443 344455777788999999999999999999999999999999987443
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=86.90 E-value=1.8 Score=43.51 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++++|.+++++|++++..+..++..+.+++.+.+.+.+.|-.+|.+++
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778888888888888888888888888888888888888888888873
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.59 E-value=2 Score=42.86 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+++++.|+++++.|+.++..|..++..|.+++.+.+.+-+.|-.+|.++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677788888888888888888888888888877777777787777776
No 76
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.55 E-value=0.68 Score=44.28 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
.+.+++.|+.+.+.|..+...|++||..|++++++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777776654443
No 77
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=86.17 E-value=5.9 Score=32.21 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-||+|+.-+-=++.+.+.|..--+.| ..+|..-++++..|+.+...++.+|.+|
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666665533333333333322222 3334444444444455555555555554
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.08 E-value=9.2 Score=34.55 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 242 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 242 dErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
=|+.+.-...+++ -|+=---|+||++ .||...+..++..+..|...+..|......|+.|+..|..+|..
T Consensus 11 LekQL~E~n~kLk-~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 11 LQKQLEEANDLLR-TESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544 3444455566665 55666666666666666666666666666666666555555544
No 79
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.95 E-value=8.9 Score=32.57 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENS-------EKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~---EN~~Lr~el~~L~ee~-------~~L~sEN~~LkeqL~~lq 316 (386)
|=.+|-+.=..|+..|++|.+++..++. .+..|+.++...+..+ +++..|...|.++|..|+
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3456666666788888888877777776 5555666666555443 456667777777777665
No 80
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.78 E-value=0.93 Score=35.52 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
.|+..|+.++..|+.+...|+.++..|+.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 81
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.70 E-value=1.3 Score=35.05 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLK 288 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr 288 (386)
.+++|+.++.+++.++..|+
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.63 E-value=4.9 Score=32.60 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLR---KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlR---Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+--.||.|=-++=|.|-...|.| -+.++++|+.+-..|+.++..|..|+..|+.-+..+-.
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 33444555555554444444433 45668888899999999999999999988876665443
No 83
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.54 E-value=4.4 Score=31.74 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..++.++.++...+..+..+..+|..|+.++..|+.+...+.++|...
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443
No 84
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.46 E-value=3.3 Score=36.94 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..|+.++..|+.+...-.+-+..|+.++..|..|+..|.+++..++
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333334444455555555555555555555543
No 85
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.10 E-value=4.8 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
-..+.+|+.+|+.|+.||..|+.+....++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456777888888888888887777666544
No 86
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=85.03 E-value=0.51 Score=37.77 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 319 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~ 319 (386)
|...|+.+|..|.+++.+|+.||..||.-..--++.+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q 52 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK 52 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4456777777777788888889999987665444444
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.66 E-value=4.3 Score=32.16 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
|-+++...+.+++.|+.+..++..+|..|+.+|.+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555444444444444444444433
No 88
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=84.52 E-value=3.5 Score=32.44 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSL---IDENASLKS---EINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~leeLE~rVe~L---e~EN~~Lr~---el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|+.....+-|+-|.+=...+.+|..-|-.. ...-.-|.. =|..|+.++..|..|+..|+.++++.+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555666666666677777777655432 011112222 244677777888888888888888654
No 89
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.41 E-value=15 Score=29.91 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.+++.+...++.+...|..++..|..++
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.23 E-value=16 Score=29.87 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-..+.+.++.++..++.++..+..+|..|+.++..|+.+...+..+|...
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555543
No 91
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=84.20 E-value=4.1 Score=34.27 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+..++++++.+.+|.+++.....++..++..+..|..+...|+.+|..
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999986
No 92
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=83.86 E-value=1.9 Score=34.09 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
|..+...|.++.+.|+.||..|+.+|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445555555655554
No 93
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=83.85 E-value=1.8 Score=29.83 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 289 SEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 289 ~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.++...++.++.|+.+|..|.+++..
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 33344444444445555555555543
No 94
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=83.69 E-value=0.5 Score=44.44 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 016610 280 LIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL~~l 315 (386)
|.+||.+|++|+..|++ ++..|+.||..||+.|...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444444444444432 3456788999999887743
No 95
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.66 E-value=4.9 Score=32.66 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.+|..|+++|..|..++..++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666555555543
No 96
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.65 E-value=1.7 Score=43.84 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+|..++..|+.+...|..+.+.|+.+...|..|...|+++++.+|
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666666666666666666666666667777777777765
No 97
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.57 E-value=5.1 Score=33.95 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
|+.++..|+..|..|...|..|.+.++.|+...+
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3333444444444444444444333333333333
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.51 E-value=14 Score=28.81 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.-+.|...-..-...+.+.+.+...++.+...|..++..|..++..+.........+|...
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666566667777888888888888888888888888888888888877777777764
No 99
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.27 E-value=15 Score=33.10 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
++.-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666666666666666666666655555544333
No 100
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.20 E-value=4.8 Score=33.48 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 297 NSEKLRQENAALLEKLKS 314 (386)
Q Consensus 297 e~~~L~sEN~~LkeqL~~ 314 (386)
+...++..|..|+++|.+
T Consensus 77 e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444455555555555554
No 101
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.12 E-value=5 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+||++|+.|+.-...|..++++|-.++.. -...|+++|..++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888888877777777777555443 3456788877764
No 102
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=83.05 E-value=2.4 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el 291 (386)
+....+||++|..|+.||..||+-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3456788888888888888888654
No 103
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.99 E-value=11 Score=34.97 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
+++.|+.+++.++.++..|..++..+.++++.+..+...+.+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444444443333333333
No 104
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.70 E-value=18 Score=29.42 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL 312 (386)
.+.+..+...+..|..+|..++
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 105
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=82.67 E-value=3.8 Score=32.55 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQL------SENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L------~ee~~~L~sEN~~LkeqL~~l 315 (386)
-|.+++.|+.+++.|+.+...|..++..- -.++..|..+...|.++|..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999888888887531 234555555666666665554
No 106
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.50 E-value=6 Score=32.30 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
.|..++..|+.+...|..+|..++.+...|..
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444433
No 107
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.37 E-value=12 Score=31.58 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|+.++..|..........+..|.....+|..++..|+.+|..+
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444443
No 108
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.34 E-value=4.5 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++|+.|+..|+...+.+...|..|.+.+.+...+...|+.+|..|
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999887
No 109
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.96 E-value=6.5 Score=31.51 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++|-.||++|..|+..|+.|+..+++-..+++..+..|.++|+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777766666666666654
No 110
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.92 E-value=15 Score=27.99 Aligned_cols=55 Identities=20% Similarity=0.133 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 252 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 252 k~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
..+||+-|-.-=. ..+++|...+..-..+....+.+|..|+..+..|+.|...||
T Consensus 22 a~knr~EaE~~y~---~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 22 AAKNLQEAEEWYK---SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445554433222 235667777776666666777777777777777777777665
No 111
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.55 E-value=2.9 Score=28.03 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
|++|+..|+.++..|.-|...|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444443
No 112
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.39 E-value=9.4 Score=27.79 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+..|+..++.++.+...++.++..++.++..+..+....+..|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777766666677777777777777777777777766665
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.23 E-value=7.6 Score=31.56 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.|+.++..++.++..+..++..|+.++..|+.+
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 114
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.19 E-value=15 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+-+|..+++.|+.|+..|+-.++.+.-++..|......+-..|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777666666666554
No 115
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=81.05 E-value=7.1 Score=31.57 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.+++-++-=-+=+...-.++.++.+.+..|..|..++..|++++..|+.+
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444443344455566677788888888888888888888877776544
No 116
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.71 E-value=3.5 Score=43.21 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHHHhHH
Q 016610 240 IQNERELKRERRKQSNRE 257 (386)
Q Consensus 240 lqdErElKR~RRk~sNRE 257 (386)
++.|++++....+++|..
T Consensus 56 dkqErDltkrINELKnqL 73 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHHH
Confidence 345777777666666643
No 117
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=80.39 E-value=1.6 Score=32.51 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+.|+++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666655555544
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=80.18 E-value=9 Score=32.31 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+.+-..|.+++.|+.++.+|+.++......+..|-.+|..|..++.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 4445556667777777777777777766666666667777665444
No 119
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.09 E-value=14 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
++=..=+..+++|+.+|..|+-.+..+..++..|+++-..+..+..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666666555555543
No 120
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.87 E-value=14 Score=36.31 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
|.+++.+-..++++|+.|...|..+|++++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555677777777777777777643
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.59 E-value=7.2 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..+|..||..|.+++..+..|...||.+...+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 44444444444444444444444444444433
No 122
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=79.53 E-value=8.2 Score=29.25 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|..++..|..||..|+.++..|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555554
No 123
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.27 E-value=28 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.229 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..|+.++..|+.+|..|+.+|.+|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666665555
No 124
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.24 E-value=3.8 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
+|+..|+.+...|..+...|+.+...|+.++.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444444444444444444333
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.21 E-value=17 Score=35.76 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 262 SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
-|.|.++.++....+.+.|++||+.|+.++..+..++.+....-..+..+-
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 344455555666666666666666666666666555555444444444333
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.20 E-value=28 Score=31.86 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|+.++..|+..+..|+..|..|...+..|+...+.+..-|.++
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 333444444444444444444444444444444444433333333
No 127
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=78.94 E-value=6.3 Score=28.72 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+|+..-+.|.+-+..|+.++..|+.
T Consensus 21 qlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 128
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.23 E-value=5.3 Score=31.78 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
++||.+|+.|+.-...|..++++|-.++.. -...||++|..|+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~ 46 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEK 46 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 467888888888888888777777555443 34567778777753
No 129
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=78.17 E-value=3 Score=39.28 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=28.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
.+|-||.++-=.==.|.|+-+...++++-.+.+.+..+...|..++..++.+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~ 170 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMK 170 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777665444455666666655555555555444444444444443333
No 130
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=78.00 E-value=6.3 Score=33.15 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---HHHHHHHHHHHHHH---HHHHHHHHH
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEAEELSRKVD-------------SLIDE---NASLKSEINQLSEN---SEKLRQENA 306 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~leeLE~rVe-------------~Le~E---N~~Lr~el~~L~ee---~~~L~sEN~ 306 (386)
.|+.+|+...-.+-|+-|.+=...+.+|..-|- .|..- ...|+.++..|++. ...|+.+|.
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~ 101 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANR 101 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566777777666677777765433 33222 23455555555543 556788888
Q ss_pred HHHHHHHHhhc
Q 016610 307 ALLEKLKSAQL 317 (386)
Q Consensus 307 ~LkeqL~~lql 317 (386)
.|..+|++|+.
T Consensus 102 ~L~~riqeLE~ 112 (118)
T 4ati_A 102 HLLLRVQELEM 112 (118)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88888888753
No 131
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.45 E-value=7.9 Score=30.74 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 245 ELKRERRKQSNRESARRSRLR---KQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 245 ElKR~RRk~sNRESARRSRlR---Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
-.||+|=-++=|-|-...|.| -+..+++|+.+-..|+.++..|..|+..|+.-+
T Consensus 17 ~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333 345567777777777777777777777776543
No 132
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=77.21 E-value=26 Score=28.00 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..+..|+.+++.-+.+-..++.++..+.+.+..-..|...|++.|..|
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445666666666666677777888888887777778888888888775
No 133
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.95 E-value=17 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 255 NRESARRSRLRKQ--AEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 255 NRESARRSRlRKq--a~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.++..+...+|++ .+++.-..+++.|+.+...++..|..|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555 444444455555555554444444444
No 134
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=76.94 E-value=3.7 Score=30.38 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 290 EINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 290 el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-+..|..++..|+.||..|+.+|..|+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777778888888888888875
No 135
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=76.77 E-value=27 Score=27.85 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-.....+|+.+...|..+...|..++..+.+.|..|......|..+|..++
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445557788888888888888888888889999999999999999999885
No 136
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.46 E-value=6.2 Score=26.47 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+..|.+++..|+.|...|+-|+..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555555555555555543
No 137
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.24 E-value=29 Score=28.04 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 256 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 256 RESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+.|..--..-++.+.+++.+...++.+...|..++..|..++..+......+..+|.
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555555555555555444444444443
No 138
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=75.52 E-value=2.2 Score=27.68 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 279 SLIDENASLKSEINQLSEN 297 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee 297 (386)
.|++.|..|++|+..|.-+
T Consensus 4 rlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444444554444444333
No 139
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.50 E-value=15 Score=34.01 Aligned_cols=48 Identities=15% Similarity=0.033 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++++|+.++..|+.+...+..++..+..++..++.+...+++++...
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444443
No 140
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.05 E-value=35 Score=28.33 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++..|+.++.....+...|..++..-+......+.++..|..+|.+|-
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666667777777776663
No 141
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.94 E-value=3.5 Score=37.97 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
.+..|..++..|..++.....|+..|++++..|+.+-..+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555555555555555555555555555555554443333
No 142
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.93 E-value=20 Score=30.51 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEI----NQLSENSEKLRQENAA 307 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el----~~L~ee~~~L~sEN~~ 307 (386)
++.|..+|+.|+.++..|..+. ..|+.++..|+.|+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544443332 2333344444444443
No 143
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=74.64 E-value=2.4 Score=33.46 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 321 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~ 321 (386)
+|.+++..+++.+..|..=+..-......|..+|..||++|..++..+.+
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 34444444444444444444444445555667777777777776554443
No 144
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=74.51 E-value=8.7 Score=35.71 Aligned_cols=9 Identities=33% Similarity=0.309 Sum_probs=4.9
Q ss_pred hhHhhhhcC
Q 016610 368 AKLHQLLDA 376 (386)
Q Consensus 368 ~kl~qll~~ 376 (386)
+.|||-+..
T Consensus 170 P~~HeAv~~ 178 (213)
T 4ani_A 170 PYLHQAVMQ 178 (213)
T ss_dssp TTTEEEEEE
T ss_pred HHHceeeee
Confidence 456665543
No 145
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.42 E-value=36 Score=28.87 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+.-|+.+|+..+..-..=+..-+++..+.+.|..++..|..++..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 367778888888888777777777778888888888888888877654
No 146
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.00 E-value=30 Score=27.20 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..+..|+.+++.-+.+-..++.++..+.+.+..--.|...|++.|..|
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445666666666666666777777777777777777777777777765
No 147
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.92 E-value=7.1 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
.+|+..|+.+...|..++..|+.++..|+.++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777777777777777666543
No 148
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=73.81 E-value=2.1 Score=27.79 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 278 DSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
+.|+-||..|.+++..|++++..|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 456667777777776666655544
No 149
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.80 E-value=4.8 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
-+|+..|+.++..|+.++..|+.++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777777777777777666553
No 150
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=72.26 E-value=5.5 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 282 DENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
.+|....+.|..|+.++..|+.|..
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 151
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=72.07 E-value=9.9 Score=35.12 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
+..|+.+++.|+.++..|..++++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444333333333
No 152
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.36 E-value=21 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
.++|+.++..|+..|..|..++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888777666444
No 153
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=70.96 E-value=22 Score=28.67 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el 291 (386)
+++.+|.-+|.+|+.|-.+...++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKL 49 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKL 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 154
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.57 E-value=19 Score=37.12 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 016610 300 KLRQENAALLEKLKSA 315 (386)
Q Consensus 300 ~L~sEN~~LkeqL~~l 315 (386)
.|..|-..|+++|+.+
T Consensus 120 ~l~~~~~~l~~~i~~l 135 (501)
T 1wle_A 120 SLRARGREIRKQLTLL 135 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 155
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=70.54 E-value=7.7 Score=27.09 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|-.++....+++..|+.+|..|..+|..
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555566677777777777653
No 156
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=70.47 E-value=7.3 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+..|..+|..|+..|-..+++++.|+.+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677777777777777777777776654
No 157
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.40 E-value=8.6 Score=38.34 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
++++|+++++.|+.++..|.+++........+|-.+...|+..
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444444444444444444444444444444433
No 158
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=70.33 E-value=28 Score=27.25 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+...+..|+.+...++.++.....+++.|..=.-.|-.+|..-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554444555555444
No 159
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.29 E-value=33 Score=27.39 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+++++.|.+--+.|+.=-..|..-+.+|.++...|......|+.+.++|.
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777888888888888888888888888888774
No 160
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.86 E-value=18 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..++..|++++..|+.+...|.++|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 161
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.81 E-value=18 Score=37.35 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 263 RLRKQAEAEELSRKVDSLIDEN 284 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN 284 (386)
|+.-+.++++|+.+.+.+.++.
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555444
No 162
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=69.80 E-value=6.1 Score=26.16 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016610 298 SEKLRQENAALLEKLKSA 315 (386)
Q Consensus 298 ~~~L~sEN~~LkeqL~~l 315 (386)
+..|+.||.+|++++.++
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555555544
No 163
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=69.78 E-value=2.1 Score=40.32 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
....++.+++..+++.|..||..|..+|++|+++..+.+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445555666666666666666666666655544433
No 164
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.62 E-value=18 Score=26.02 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|.+|+.|...|..+.+.|+.+...-..-..-|..+|.+|+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555444444455555555554
No 165
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=69.51 E-value=13 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
-..|..+|++|+..+.+..+||.+|..
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999888855
No 166
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.46 E-value=7 Score=32.92 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
..|+.+++.|+..+..|...+..+
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444433
No 167
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=69.32 E-value=6.2 Score=38.11 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
+++++.|+++|..|.+|+++|+++.+.+...|...
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 44566666666666666666666555555544333
No 168
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.03 E-value=44 Score=26.95 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|..|+.++..+..++..|..++.+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 169
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.00 E-value=21 Score=26.04 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
+..|+..|-+|...-+.|..-+..|+.|...|
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 44445555444444444444333344333333
No 170
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.84 E-value=37 Score=35.58 Aligned_cols=20 Identities=45% Similarity=0.463 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLR 265 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlR 265 (386)
|+++..+|.+ +|+|++-.+.
T Consensus 486 ~k~~~~~~~~---~e~~~~~~~~ 505 (592)
T 1f5n_A 486 EKEIEVERVK---AESAQASAKM 505 (592)
T ss_dssp HHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHH
Confidence 4444444433 4555444333
No 171
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.76 E-value=41 Score=34.66 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|..++..|++++..|+.+...|.++|..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555544
No 172
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=68.75 E-value=20 Score=30.25 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|..++..++.+...|..++..|+..+..|+.|-...=.+|.+++
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666777676667776664
No 173
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.61 E-value=18 Score=26.83 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
.++++|..+...|..++..|+..+..|+.+...-+++
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666655555555544444333
No 174
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.57 E-value=4.6 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+.|..-+..|+.||.+|+.+++.|-.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888999888888877643
No 175
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.27 E-value=25 Score=28.44 Aligned_cols=45 Identities=29% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.++|-++|..|+-....|..|-.+...++..-..|.+.|+.+|..
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666666666666654
No 176
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=68.23 E-value=12 Score=34.75 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcc
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN 326 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~ 326 (386)
+.+|+.+.....++.+.|+....+|++||..|+..|+.|.-...+.+.+.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 45677777778888888999999999999999999999976666666554
No 177
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=67.92 E-value=45 Score=26.65 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|+|-++.+..-..+++.|+.-...|..=-..|..-+.+|..|-..|...|..++
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777777777777777777664
No 178
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.64 E-value=7.6 Score=38.95 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~ 293 (386)
|+++.+.++.++..|.+++..
T Consensus 22 l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 22 LLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 179
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=67.48 E-value=22 Score=25.57 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 290 EINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 290 el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++..|..+++.|+.....|+.+|+.
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555543
No 180
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.33 E-value=3.1 Score=33.30 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
+.|..++.+|...|..|..|...|
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443443333333
No 181
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.18 E-value=15 Score=35.99 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
++..||..|...+.+...|+..+..++.++.+|..+...|+.++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555544444444433
No 182
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=66.63 E-value=57 Score=27.38 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=7.0
Q ss_pred HHHHHhHHHHH
Q 016610 250 RRKQSNRESAR 260 (386)
Q Consensus 250 RRk~sNRESAR 260 (386)
+|.-+|+.+-+
T Consensus 34 ~ri~~NtqaI~ 44 (114)
T 2xzr_A 34 GRVTRNTQSIE 44 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 45666776665
No 183
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=66.11 E-value=34 Score=26.75 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+-|...+..+..|+.++..++.+-.....+...|-.-...|+.|....|.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888888888888888888888888877888888888886654
No 184
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.41 E-value=12 Score=31.18 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
++.|..+++.|+.||..|++++..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 185
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.18 E-value=61 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+.+.+++.|......|..+|..|..++...+..|..|...-..+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555554444
No 186
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=65.11 E-value=27 Score=31.35 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.3
Q ss_pred cccchH
Q 016610 239 WIQNER 244 (386)
Q Consensus 239 ~lqdEr 244 (386)
.|.+|.
T Consensus 67 nLT~EQ 72 (175)
T 3lay_A 67 PLTTEQ 72 (175)
T ss_dssp -CCHHH
T ss_pred cCCHHH
Confidence 344444
No 187
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.08 E-value=40 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
.....|+..+..|..+...|..++..++.....|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L 68 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444444444433333333333
No 188
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=64.98 E-value=16 Score=34.27 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
++..|+++++..+.|+..+++.+++.+++..+++..-.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777777777766665555554433
No 189
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=64.74 E-value=0.13 Score=42.38 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 016610 245 ELKRERRKQSNRESARRSRLRKQ 267 (386)
Q Consensus 245 ElKR~RRk~sNRESARRSRlRKq 267 (386)
-++-.||+-+||.+|++||.||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 35568899999999999999984
No 190
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=64.56 E-value=16 Score=35.89 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|..++..|+........+|..|+..+..+......|+++|..|
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555555555444
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.24 E-value=28 Score=34.78 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|..++..|++++..|+.+...|.++|..+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555543
No 192
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=64.06 E-value=29 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
.|+.+++.|+.....++.++..+.+.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 193
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=64.05 E-value=16 Score=33.39 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++-|-.++..|+.+|..|.+++.+|+.
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 194
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.83 E-value=6.1 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el 291 (386)
.+++.|+.+++.|+..+..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888777776644
No 195
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.81 E-value=51 Score=29.54 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016610 299 EKLRQENAALLEKLKS 314 (386)
Q Consensus 299 ~~L~sEN~~LkeqL~~ 314 (386)
.+|..|...|+.+|..
T Consensus 116 ~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 116 NAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 196
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=63.58 E-value=20 Score=31.17 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccccCCCCcchHHHhhhc
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRV 343 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~~~~~~~~~p~~~e~lls~v 343 (386)
++|+..+.+|-.....|..+-=.|...+..-.-|...|+.++.+++-.-.. ..+ ...-+|.|.+|..+
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKfkK-P~L----kkVr~sad~ml~al 128 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKR-PTL----RRVRISADAMMQAL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcccCC-Ccc----CccccCHHHHHHHH
Confidence 445555555555555555555555555666666778888888877521100 011 33345677777654
No 197
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.53 E-value=60 Score=33.68 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHhHHHHH----------------HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 240 IQNERELKRERRKQSNRESAR----------------RSRL----------RKQAEAEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 240 lqdErElKR~RRk~sNRESAR----------------RSRl----------RKqa~leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
++.|+..+....+++|+..-- ..|. +=.++.++|+.++..|+.....-...|..
T Consensus 57 ~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Irv 136 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKA 136 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888875422 0111 11234455555555555544433355555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 294 LSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 294 L~ee~~~L~sEN~~LkeqL~ 313 (386)
|+..++.++.+.+.|...|.
T Consensus 137 Lq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 137 LQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544443
No 198
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=63.30 E-value=39 Score=29.86 Aligned_cols=42 Identities=31% Similarity=0.372 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 276 KVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~-------~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
-|+.|+.-..-|+++++ .....+++|..||..++++|.+.+.
T Consensus 113 MVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 35556665556666554 3334578899999999999998753
No 199
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.26 E-value=51 Score=27.23 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 016610 254 SNRESARRSRLRKQAEAEELSRKVDSLI---DENASLKSEINQLSENSE-------KLRQENAALLEKLKSAQ 316 (386)
Q Consensus 254 sNRESARRSRlRKqa~leeLE~rVe~Le---~EN~~Lr~el~~L~ee~~-------~L~sEN~~LkeqL~~lq 316 (386)
.|-.+|-..=..|+..+++|...+..++ ..+..|+.++...++-+. ++..|...|..+|..++
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556777777778888999988888777 556667777776665543 34445555555555553
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.03 E-value=13 Score=37.40 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
.++..|+.+.+.|+.++..|+.++..+++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566788888888888889999999999999888888877764
No 201
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=62.82 E-value=7.4 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 293 QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|..+++.|..+|..|..++..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555555555555544
No 202
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=62.75 E-value=4 Score=34.68 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
-+|+|+.++..|+-||..|++++..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888888888888777777753
No 203
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.46 E-value=27 Score=27.94 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|+.....|..++..|..++..+..+...|+.+|..+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555566666666655554
No 204
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=62.07 E-value=16 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
|..+++.|-.+...|+.|...||+
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333344444444444444444443
No 205
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.00 E-value=53 Score=29.17 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016610 299 EKLRQENAALLEKLKSA 315 (386)
Q Consensus 299 ~~L~sEN~~LkeqL~~l 315 (386)
..++..|..|+.+|.+.
T Consensus 111 ~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555443
No 206
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.81 E-value=16 Score=28.29 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+-|+-|.+=...+++|..-|-.+...-..=..-|....+-+..|..++..|++++..|+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444455566666655544210000001111222334455566666666655553
No 207
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.86 E-value=54 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++.|..-...||.++....+-..+|+.++.-++..+..|.
T Consensus 19 I~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 19 IFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3334444456667777777777778888777777777664
No 208
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.68 E-value=19 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+|..+++.|..+...|+.|-..|+..|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444444444444445555555555544
No 209
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=60.56 E-value=15 Score=28.70 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.+++..+++.|++|-.-.-.++..+.--|+..+.++..|..+|..+
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~I 63 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDI 63 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355666666666666666655566666666666666666666666654
No 210
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=60.55 E-value=12 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.+.|+.++..|++..+.|.++++.|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444433
No 211
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.82 E-value=6.9 Score=33.55 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+|..+|+.|..++..|++++..|+++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 212
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.37 E-value=91 Score=32.06 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016610 298 SEKLRQENAALLEKLKSA 315 (386)
Q Consensus 298 ~~~L~sEN~~LkeqL~~l 315 (386)
+..|+.....|+.+|..|
T Consensus 170 i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555555554
No 213
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.24 E-value=5 Score=34.08 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777778888999999999875
No 214
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.12 E-value=21 Score=28.90 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++-..|..+|+.|+.|+..|+.++..|++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666654
No 215
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=58.89 E-value=37 Score=32.33 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016610 244 RELKRERRKQSNRESARRSRLR-KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 320 (386)
Q Consensus 244 rElKR~RRk~sNRESARRSRlR-Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~ 320 (386)
..+|+++..+-++.-=---|+. -..++.+|..+++.|...-..+.++|+.|.+.=..|+.+...++.+|..+|...+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 3455555444433322222221 2468889999999999999999999999999999999999999999998876554
No 216
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.86 E-value=34 Score=28.74 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-..|-++.-..+.|...|+.++..|+..++..+.-...|..+...|+
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 334555566666667777777777776666555544444443333333
No 217
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.65 E-value=22 Score=35.89 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
++.++|++++..|+.....-...|..|+..++.++.+.+.|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555444466666666666666666665555
No 218
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.61 E-value=62 Score=33.90 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLI 281 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le 281 (386)
|.|+|-=.|-+++|++-+.-++.++
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444433
No 219
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.38 E-value=12 Score=27.92 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 292 NQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.+|-++++.|+.||..||.+|.+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 34555566666677777777765
No 220
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.02 E-value=11 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+.+|..+..+.+.||-+|.+++..|+
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555556666777777777776654
No 221
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=57.83 E-value=33 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
|...|+.|..|+..|..++..+.+++..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665555544
No 222
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.61 E-value=23 Score=37.17 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
.+.++.++|++++..|+.+...-...|+.|+..++.++.+.+.|...|.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666655555555445555555555555555555554444
No 223
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.25 E-value=10 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 293 QLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+.+.+..|..||..|+++|..++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777776553
No 224
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=57.10 E-value=26 Score=26.06 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+++..+..|+.+...++.++....++++.|..=.-.|-.+|..-
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345556666666666666666666666665555444555554443
No 225
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=57.06 E-value=19 Score=29.07 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016610 300 KLRQENAALLEKLKSAQ 316 (386)
Q Consensus 300 ~L~sEN~~LkeqL~~lq 316 (386)
.|+..|..|.-+|++|+
T Consensus 60 ~le~~n~~l~~riqELE 76 (83)
T 4ath_A 60 KLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 35555666666665553
No 226
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=56.75 E-value=45 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
+|...|+.|..|+..|..++..+.+++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777766655
No 227
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.58 E-value=35 Score=27.66 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+-+.|..+++.+..|...|+.++..|++
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555543
No 228
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.56 E-value=58 Score=40.86 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++...|.++++.|+++++++..|.+.|+.++.
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.98 E-value=10 Score=38.20 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
|..|...|+.+...|+.++.++..++..++.+...+++++..++
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444445555555555555555555556666666543
No 230
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=55.69 E-value=1e+02 Score=26.76 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQ---------------AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKq---------------a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
.|.|+.+-||.-+---|.... ...++...++..++.+......+......+|..|+.+...+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777666654432 23455566666666666666666677777777777777777777
Q ss_pred HHHhh
Q 016610 312 LKSAQ 316 (386)
Q Consensus 312 L~~lq 316 (386)
|+.|+
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 77664
No 231
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=55.56 E-value=57 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+-.+.|..+|.+|+.....+.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34467777888887777777777777754
No 232
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=55.49 E-value=14 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..|..++..|.+++..|+.|+..|+.++...+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888887776653
No 233
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.48 E-value=65 Score=24.36 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..+++.|......-..++...+.++..|+...+.|..+|..+
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666666666666666666666666666666554
No 234
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.34 E-value=29 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
|..+++.|..+...|+.|-..|+.-|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 333444444444444445555554444
No 235
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.33 E-value=1.3e+02 Score=29.92 Aligned_cols=17 Identities=35% Similarity=0.245 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016610 299 EKLRQENAALLEKLKSA 315 (386)
Q Consensus 299 ~~L~sEN~~LkeqL~~l 315 (386)
..|..|-..|+++|+.+
T Consensus 67 ~~l~~~~~~~~~~~~~~ 83 (421)
T 1ses_A 67 EALIARGKALGEEAKRL 83 (421)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 236
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.22 E-value=76 Score=32.10 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=12.1
Q ss_pred cchHHHHHHHHHHHhHHH
Q 016610 241 QNERELKRERRKQSNRES 258 (386)
Q Consensus 241 qdErElKR~RRk~sNRES 258 (386)
+.|++.+....+++|+..
T Consensus 60 k~er~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLF 77 (390)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 456777777777777654
No 237
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=54.72 E-value=27 Score=27.12 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
-..|++++.+|..|...|...|..
T Consensus 34 WaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 34 WTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677777777777777777664
No 238
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=54.56 E-value=94 Score=25.93 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++|...+.+|-.....|..+-=.|...+..-.-|...|+.++.++
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 356666666666666666666666667777777888888888877
No 239
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=54.37 E-value=41 Score=30.55 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
+..|..|+++|..|..++...++++..+..+
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 240
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=54.13 E-value=31 Score=32.35 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
.+..++..|+.....++.|...++.++.+.+.+...||++-
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 241
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=54.08 E-value=49 Score=29.72 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDE-------NASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~E-------N~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+-|.+|+-.++....++..|... ...+..+++..+++++.+ |..|+++|..+
T Consensus 150 ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 150 IAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333444444444444444444321 122333444444444433 55566665554
No 242
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.92 E-value=37 Score=31.66 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++-+.|..+++.|+.|+..|+.++..|++ |..+-+-|..-|..|
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l 158 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44556666677777777777766666654 344444455555544
No 243
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=53.75 E-value=24 Score=33.37 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 248 RERRKQSNRESA-RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 248 R~RRk~sNRESA-RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
-.-.-++|||.. +.+|.||+.-.+++. .|+... --..+|..|++++..++.|+....++|.++
T Consensus 94 ~~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~ 157 (234)
T 3plt_A 94 VTLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 334456688765 556666655444443 333221 112445566666666666665555555554
No 244
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.19 E-value=20 Score=35.88 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..++..|++++..|+.+...|.++|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 245
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=52.87 E-value=6.9 Score=38.36 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
+++..||.+|..++++...|+..+..+++++..|......|..++
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666766666666666666666665555554444444433
No 246
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.85 E-value=56 Score=41.05 Aligned_cols=7 Identities=43% Similarity=0.600 Sum_probs=2.6
Q ss_pred ccccCCC
Q 016610 141 AMSIGNA 147 (386)
Q Consensus 141 ~m~~g~~ 147 (386)
++-+|-|
T Consensus 1649 aLLVGvg 1655 (3245)
T 3vkg_A 1649 ALLIGVS 1655 (3245)
T ss_dssp EEEEEST
T ss_pred eEEecCC
Confidence 3333333
No 247
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=52.81 E-value=23 Score=33.54 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.|-.+|+.++...+.|..++..+.+..+..+.....|.+.|.+|
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554555555555554
No 248
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.68 E-value=1e+02 Score=25.69 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 281 IDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 281 e~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+...|++.+..+.-....|+.+...|+++|.-+
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333444555566666665544
No 249
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.60 E-value=43 Score=24.66 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
..||.-|..|+..|..|.+.|..|...+..|+
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 45566667777777777777766665555544
No 250
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=52.37 E-value=21 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.|.+.+.+||..++.-..++..|+.++.+++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777766666666666655543
No 251
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=52.23 E-value=28 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLI---DENASLKSEINQLSENSE 299 (386)
Q Consensus 270 leeLE~rVe~Le---~EN~~Lr~el~~L~ee~~ 299 (386)
+.+||.++..|- .+|..+..++.+|..++.
T Consensus 81 ~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 81 NIEMRHRLSQLMDVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344554444433 356666666666555443
No 252
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.17 E-value=96 Score=32.54 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
++..|.+.+.+++|..+-.+-++++++...
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666665555555555555433
No 253
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.21 E-value=45 Score=30.40 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSE 299 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~ 299 (386)
=-..+.+|+.++..|+++|..|+.+.+...++++
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777788888888888877777666543
No 254
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.21 E-value=10 Score=38.30 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..+.+++..|+........+|..|+..+..+......|+++|..|.
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444445555554445555666666666666666777777776664
No 255
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.13 E-value=87 Score=29.21 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 292 NQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..++.++..++.+...++.+|..
T Consensus 125 ~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 125 NNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444443
No 256
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=51.13 E-value=1e+02 Score=25.44 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++.|+.+...=..+|..|++.+..+..++..|..++..++
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666677777777777777777776653
No 257
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=51.01 E-value=48 Score=34.12 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASL 287 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~L 287 (386)
|+.-+.++++|..+.+.+.++...+
T Consensus 46 ~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 46 WRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444433
No 258
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.84 E-value=38 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.|..++..+..++..|..+...|..++.++
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 259
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=50.37 E-value=1.3e+02 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDS 279 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~ 279 (386)
++...+.-+-+..|+-|-+..+++++.++.|..+...
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~r 135 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888889999999999999999999877663
No 260
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=50.36 E-value=1.5e+02 Score=26.88 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHH
Q 016610 246 LKRERRKQSNRESARR 261 (386)
Q Consensus 246 lKR~RRk~sNRESARR 261 (386)
+.+++-+++-++++|-
T Consensus 32 le~ek~~l~~~e~~r~ 47 (169)
T 3k29_A 32 LELEQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444454443
No 261
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=49.95 E-value=41 Score=26.61 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.++.++..+++.|..--.-+..+++.|.+.=..|+.+...+..+|..+|
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777776666666666666666655544
No 262
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.91 E-value=13 Score=38.75 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+..+|+.++.+++.+......++.+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQD 363 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3566777777777776666655554444
No 263
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=49.47 E-value=77 Score=23.43 Aligned_cols=47 Identities=30% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+..+..|+.++..++.+-.....+...|-.-...|..|....|.-|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45677788888888888888888888887777788888888876664
No 264
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=49.36 E-value=21 Score=25.54 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+|..+-+.|++....|..++..|.+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 265
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=49.24 E-value=42 Score=22.82 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|++++..|++++.-|.-....|++++..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666667777777777777777776654
No 266
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=49.23 E-value=62 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|.++|..|..++..-..++..+.+.|..
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333334444444444443
No 267
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=49.22 E-value=86 Score=31.80 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh-cccccCCCCcchHHHhh
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV-LNEDKRVTPVSTENLLS 341 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev~-~~~~~~~~p~~~e~lls 341 (386)
|+.-+......|..|+..+.........|++.+..|.....+... ........++.+.+++.
T Consensus 96 ~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~~~~~~~~~~~~~~dC~~i~~ 158 (411)
T 3ghg_C 96 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIAN 158 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESCCCCSCCBSSHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCcCCCCCHHHHHh
Confidence 333333444444555555555555556666666666433322110 00222345667777765
No 268
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.89 E-value=9.2 Score=28.25 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLK 288 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr 288 (386)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888888887777665543
No 269
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=48.62 E-value=23 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016610 292 NQLSENSEKLRQENAALLEKLKSAQL 317 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~lql 317 (386)
+.|..+|..|++..+.|..+|..|+.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777777777777777776654
No 270
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=48.46 E-value=36 Score=23.24 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 293 QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|..+++.|..+|..|..++..|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444444443
No 271
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.39 E-value=43 Score=33.77 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=4.7
Q ss_pred hhHhhhhc
Q 016610 368 AKLHQLLD 375 (386)
Q Consensus 368 ~kl~qll~ 375 (386)
.+||+|-.
T Consensus 231 e~ih~LT~ 238 (409)
T 1m1j_C 231 EKIHLITT 238 (409)
T ss_dssp HHHHHHHT
T ss_pred cceeeccc
Confidence 46666654
No 272
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=47.72 E-value=39 Score=27.28 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
.+++.+++.+...|+..|..|...+..|..++
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35566777888888888888888887775543
No 273
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.30 E-value=6.5 Score=29.02 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 281 IDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 281 e~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-.||..|..-+.+|......|+.....|...|.+|+
T Consensus 16 lkenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 16 LKENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 357777777777776666666666666666666654
No 274
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.24 E-value=50 Score=26.47 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
..|..+++.+..++..|+.++..|++ |..+-..|.+-|.
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e----l~~~~~~laevl~ 75 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE----VAEHVQYMAEVIE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34444444444444444444444433 3334444444443
No 275
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.20 E-value=71 Score=29.35 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
.+|+.++..|+.+|..|..++..|..+++++..+
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666665555554444
No 276
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.04 E-value=66 Score=31.85 Aligned_cols=46 Identities=11% Similarity=0.300 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+.|..+++.|...-..|..++..-...+..|+.+...|+-.|..|
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3455555555555555555555555555556666666666655444
No 277
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=47.04 E-value=1.1e+02 Score=24.68 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 016610 301 LRQENAALLEKLKSAQ 316 (386)
Q Consensus 301 L~sEN~~LkeqL~~lq 316 (386)
++-=-..|-.+|+.++
T Consensus 53 iKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 53 IRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333344445555544
No 278
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=46.96 E-value=57 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 292 NQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|++++.+|..|...|+..|..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544
No 279
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=46.50 E-value=34 Score=34.64 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~e---e~~~L~sEN~~LkeqL~~l 315 (386)
|..+++.|+++...+.++|..++. +...|..|-..|+++|+.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443321 1233444444455555444
No 280
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.39 E-value=40 Score=23.14 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 293 QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|..+++.|..+|..|..++..|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 33344444444444444444433
No 281
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=46.25 E-value=16 Score=35.78 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+++..|+.....+..++..|+..+..++.+...|+++|..|+
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777777777777777777776664
No 282
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=46.23 E-value=37 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++|+..+.+|-.....|..+-=.|...+..-.-|...|+.++.+|+
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3455555555555555555555555555555667777888887775
No 283
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=45.83 E-value=1.3e+02 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016610 295 SENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 295 ~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..++.+|+.|...|+++|.++.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999988864
No 284
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=45.54 E-value=42 Score=28.58 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
.|+.|++.|+.....|...+..+++++..++...+.|
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 285
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.37 E-value=11 Score=24.55 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQ 293 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~ 293 (386)
-+.|++....|++++..
T Consensus 9 ndaleqkiaalkqkias 25 (28)
T 3ra3_A 9 NDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 286
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.11 E-value=85 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.+.-|+.+|+..+..-..=|.--+++.++.+.|..++..|+.++..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555444
No 287
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=44.98 E-value=1.1e+02 Score=24.05 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
...++.+...+..|+.+...++.++.....++..|..=.-.|-.+|..-
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455666667777777777777777766666666555555555555443
No 288
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.75 E-value=46 Score=23.84 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+++.++-.++.+.+.+...|+.++..|
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 289
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=44.65 E-value=43 Score=32.70 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.7
Q ss_pred CCcchHHHhh
Q 016610 332 TPVSTENLLS 341 (386)
Q Consensus 332 ~p~~~e~lls 341 (386)
.+.++.+++.
T Consensus 72 ~~~dC~~i~~ 81 (323)
T 1lwu_B 72 SGMHCEDIYR 81 (323)
T ss_dssp CBSSHHHHHH
T ss_pred CCCCHHHHHh
Confidence 4456666654
No 290
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.54 E-value=45 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
|..+++.|..+...|+.|...|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444443
No 291
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=44.14 E-value=40 Score=30.93 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.++..|+++|..|.+|.++|.+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 292
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=44.09 E-value=42 Score=28.49 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.++.+|+.+|+.++..|..|++-...-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666655544443
No 293
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.08 E-value=48 Score=30.74 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLK 288 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr 288 (386)
+.+++.|+.++..|+
T Consensus 65 ~~~l~~l~~e~~el~ 79 (213)
T 4ani_A 65 KAQIAELEAKLSEME 79 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 294
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.54 E-value=90 Score=26.36 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.2
Q ss_pred chHHHHHHHHH
Q 016610 242 NERELKRERRK 252 (386)
Q Consensus 242 dErElKR~RRk 252 (386)
++.++.+.+..
T Consensus 42 ~~~dl~~l~~I 52 (142)
T 3gp4_A 42 GAEDLRWILFT 52 (142)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44455544443
No 295
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=43.43 E-value=96 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 306 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~ 306 (386)
..|+.++..++.-...|..++..+.-.+..+..++.
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~ 43 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVERVAMTAEACSRQHR 43 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 334444444444333344444444444443333333
No 296
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.86 E-value=1.5e+02 Score=24.93 Aligned_cols=8 Identities=13% Similarity=-0.159 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 016610 277 VDSLIDEN 284 (386)
Q Consensus 277 Ve~Le~EN 284 (386)
.+.|+++.
T Consensus 90 ~~~l~~~i 97 (142)
T 3gp4_A 90 RIELKNRI 97 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 297
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=42.86 E-value=61 Score=28.91 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVD 278 (386)
Q Consensus 264 lRKqa~leeLE~rVe 278 (386)
++|+++|.+|..+..
T Consensus 22 ~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 22 KQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 298
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=42.68 E-value=80 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
+.|+.|++.|+.....|...+..+++++..+..+.+.+.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666777777666666666666666665555544443
No 299
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=42.56 E-value=21 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 292 NQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+|+.++..|+.|...|+++|+.|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555566666666664
No 300
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.55 E-value=48 Score=34.16 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~ 293 (386)
+|..+++.|+++-..+.++|..
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 301
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.45 E-value=1.5e+02 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.209 Sum_probs=8.2
Q ss_pred cccchHHHHHHHHHH
Q 016610 239 WIQNERELKRERRKQ 253 (386)
Q Consensus 239 ~lqdErElKR~RRk~ 253 (386)
+-.-|.++...||.+
T Consensus 15 ~~~ye~~I~~LR~qi 29 (119)
T 3ol1_A 15 GDLYEEEMRELRRQV 29 (119)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455666666655
No 302
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.33 E-value=52 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
++|-++++..-+|...-+++|..|+.+...|+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777766654
No 303
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=41.62 E-value=41 Score=23.11 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 293 QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|..+++.|..+|..|..++..|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444455554444443
No 304
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.57 E-value=48 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLE 310 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~Lke 310 (386)
|..+++.|-.+...|+.|-..|+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333334444444443
No 305
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.45 E-value=43 Score=28.55 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L 294 (386)
+++..|+.||.....++...
T Consensus 92 ~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 306
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.43 E-value=1.4e+02 Score=24.15 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++.++..+..|+.+...++.++.....++..|..=.-.|-.+|...
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666665555555554444555554443
No 307
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.11 E-value=27 Score=35.22 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 293 QLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+++++..|+.+...++++|+.|+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 76 QRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333334444444555555554
No 308
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=40.92 E-value=56 Score=30.94 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 284 NASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 284 N~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
...|..++..|.++..+|+.+...|+++
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444444
No 309
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.75 E-value=29 Score=34.79 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++++++.++..+.+....|..+. ..|..+...|++++..++
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~-------~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQR-------NALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 44555555554444444444333 344445555666666554
No 310
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.70 E-value=1.6e+02 Score=30.23 Aligned_cols=22 Identities=0% Similarity=-0.173 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~ 293 (386)
+|..+++.|+++-..+.++|..
T Consensus 48 ~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 48 RTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 311
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.59 E-value=39 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 293 QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+|..+++.|..+|..|..++..|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 44444444555555555555444
No 312
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.23 E-value=1.5e+02 Score=25.04 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 016610 301 LRQENAALLEKLKS 314 (386)
Q Consensus 301 L~sEN~~LkeqL~~ 314 (386)
|+.....|+.+|++
T Consensus 87 lq~KiaeLKrqLAd 100 (107)
T 2k48_A 87 LETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 313
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.80 E-value=57 Score=28.59 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++..|+.||.....++....+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~ 113 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIK 113 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444433
No 314
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=39.57 E-value=21 Score=33.63 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 236 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKS 289 (386)
Q Consensus 236 ~e~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~ 289 (386)
.+.+...-|++.+.+.++.-+..+.-+..-|++++.+|+.++..|+.....|..
T Consensus 259 ~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 259 SDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777666666666655666677777788888887777766655543
No 315
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.36 E-value=1.8e+02 Score=26.83 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
+...+.++..++.+...++.+|..
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~ 139 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKR 139 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444433
No 316
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=39.30 E-value=54 Score=26.31 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++.+|...|+.|++|..-.-.+|..+.--|+....++..|..+|..+
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~I 55 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGI 55 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 345566666666666666555555555555554444444445555443
No 317
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=38.98 E-value=6.4 Score=30.84 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDEN---------------------ASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN---------------------~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+..||.++.+|+.|. +.|++++.+|+=++..|...|.+|+.+|+
T Consensus 15 lqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 15 LQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 455666777777664 34778888888888888888888888775
No 318
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=38.83 E-value=84 Score=28.46 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.2
Q ss_pred hhHhhhhc
Q 016610 368 AKLHQLLD 375 (386)
Q Consensus 368 ~kl~qll~ 375 (386)
+.|||-+.
T Consensus 151 P~~HeAv~ 158 (197)
T 1dkg_A 151 PNVHQAIA 158 (197)
T ss_dssp TTSEEEEE
T ss_pred HHHhheee
Confidence 45565554
No 319
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=38.78 E-value=1.6e+02 Score=27.86 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
.+..|++++..++.++.....+|..++++
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 45566666666666666666666666553
No 320
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=38.66 E-value=1e+02 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+.+|+.+++.|+.+...+..++..+.++
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 321
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=38.28 E-value=50 Score=28.93 Aligned_cols=33 Identities=6% Similarity=-0.025 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
..||+++..|+.....+..++..|++++..|+.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666766666666666666666666665554
No 322
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.15 E-value=35 Score=29.80 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++..|...+.....+...|..++..-+......+.++..|..+|.+|-
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555556666666666666653
No 323
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.92 E-value=1.1e+02 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|++.++....+|..|..++..|+-++..|...-......|..
T Consensus 114 ~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 114 KLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQ 156 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555554444444443
No 324
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.80 E-value=46 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..+.+...++.++..++.++..++.+...++.+|...
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344445555566666666666666666666666543
No 325
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.62 E-value=1.3e+02 Score=24.34 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEIN--------QLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~--------~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.|++.+.+.+..+++.+.-...|.-|+. .+..++...+.+...|+.+++.++
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444443 344455556666666666666654
No 326
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.18 E-value=48 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 016610 301 LRQENAALLEKLKSA 315 (386)
Q Consensus 301 L~sEN~~LkeqL~~l 315 (386)
-..|+..|+.+|..+
T Consensus 37 kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 37 KEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 327
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.82 E-value=69 Score=21.99 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
|..+++.|-.+...|+.|...|++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44444444444444444555444443
No 328
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.70 E-value=1.2e+02 Score=22.12 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 257 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 257 ESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el 291 (386)
|-|-||=.+-+..+++||.++..-+.++..+..++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555554444444444433
No 329
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.42 E-value=1e+02 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+.+++.+-+.+++||..++++.+..+..
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~ 63 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKAD 63 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555554443
No 330
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.21 E-value=1.5e+02 Score=23.07 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 265 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|-...+.+++..+..|+.+...++.++.....++..|..=.-.|-.+|..-
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334456667777777777777777777777667766665555555555544
No 331
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=36.07 E-value=1.6e+02 Score=23.22 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
||..++..-..|...|..-+..|+.++.+...=|..|..++..
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~ 49 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLN 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 332
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.03 E-value=1.1e+02 Score=24.03 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENAS------LKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~------Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|+.|+.++..|+.+... =..++..|..++..+..+...+-++=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777642 13566677777777777777776665554
No 333
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=35.93 E-value=1.8e+02 Score=23.74 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+..+|..+..+++.|+.+...|...|.++
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665
No 334
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=35.91 E-value=15 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKS 289 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~ 289 (386)
.+|+|.+++.+.++.++..|+.
T Consensus 6 rELeEa~Erae~ae~~vnkLR~ 27 (45)
T 3zwh_Q 6 RELEDATETADAMNREVSSLKN 27 (45)
T ss_dssp SHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444443
No 335
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.52 E-value=1.1e+02 Score=29.76 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 016610 268 AEAEELSRKVDSLIDENASLKSEIN------QLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~------~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+++++|+++++.|+.+...|..+++ ..+.++..|..+...+..+|.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666643332 11333444444555555555544
No 336
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.41 E-value=66 Score=29.01 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+-+.|...-..|...+..|.++...|+.+...|++++.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555333
No 337
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.19 E-value=1.3e+02 Score=24.88 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
.+|+.+++.|+++...|.. ++.+...|+.+-..|..+|..+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555544432 2333344555555555555554
No 338
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.10 E-value=1.7e+02 Score=23.21 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSL 280 (386)
Q Consensus 268 a~leeLE~rVe~L 280 (386)
.+++.|+..+..|
T Consensus 31 ~~i~~l~~~l~~l 43 (112)
T 1l8d_A 31 NKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 339
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.06 E-value=88 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
||+.+..|..-.++|.+++.+|.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544444444444444443
No 340
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=34.98 E-value=70 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 292 NQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|..+.+.|+..+..|+.+|..+
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555666666666544
No 341
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.77 E-value=39 Score=34.05 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 281 IDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 281 e~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
+.+...++.++..|++++..++.|...|+
T Consensus 71 e~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 71 DDQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444455555555555565655444
No 342
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.31 E-value=1.7e+02 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++..+.+...|..++..|..++..|..+...|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555554
No 343
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=34.18 E-value=1.1e+02 Score=29.52 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 258 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+......--..++.+|..++..++.+-..+.+.++++.+.+..|+.|.++++.-|+
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444455667788888888888888888888888888888888888877765544
No 344
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.09 E-value=1.5e+02 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~ 293 (386)
.|..+|..|++||..|.+.++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443
No 345
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.01 E-value=1e+02 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++..+..|..+...++.++..++.++.+|+..-..++++|....
T Consensus 350 i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666666665543
No 346
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.81 E-value=1.8e+02 Score=25.70 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 285 ASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 285 ~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
..|+..+...+.....++.+...|+.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~ 95 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSE 95 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 334444444444444444444443333
No 347
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=33.54 E-value=75 Score=20.41 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEI 291 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el 291 (386)
..+|-+|+-|...|+.|+
T Consensus 6 kdevgelkgevralkdev 23 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHH
Confidence 333433333333333333
No 348
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.10 E-value=2.1e+02 Score=24.02 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
++.++..++..|.++...|+..+..|.+
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 349
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.06 E-value=1.9e+02 Score=23.12 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHh
Q 016610 293 QLSENSEKLRQENAA-LLEKLKSA 315 (386)
Q Consensus 293 ~L~ee~~~L~sEN~~-LkeqL~~l 315 (386)
.+..++...+.+... |+.+++.|
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555 66555554
No 350
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.92 E-value=1.4e+02 Score=21.62 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
++.|+.-++.|...-+.|..++.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 351
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.92 E-value=30 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 016610 289 SEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI 323 (386)
Q Consensus 289 ~el~~L~ee~~~L~sEN~~LkeqL~~lql~~~~Ev 323 (386)
.++..|++++..|+.|+..|++- =+..++.-|+
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~~~--P~~Vg~v~e~ 46 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLRSP--PLLVGVVSDI 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--CEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CceEEEEEEE
Confidence 33333344444444455555542 1344444443
No 352
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.90 E-value=1.5e+02 Score=24.91 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
++++..+.++.+=.+|-.++..+++.|-.++-.|+.|...|+.-+
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555555445555555555555555555555555555443
No 353
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.87 E-value=1.2e+02 Score=27.43 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 261 RSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 261 RSRlRKqa~leeLE~rV-e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+-|.+.++++...+..+ ..|++....|......|+..+..|+.+-..|...+..++
T Consensus 27 ~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~ 83 (174)
T 2p22_A 27 EDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLT 83 (174)
T ss_dssp HHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 444555666666666666666666666666666665553
No 354
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=32.80 E-value=68 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el 291 (386)
-..+.+|+.+..+|++||..|..+-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777777777777776653
No 355
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=32.77 E-value=1.5e+02 Score=22.11 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 269 ~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
-+.+|+.++..++.-...|..+++.+.-.++.+..+
T Consensus 7 ~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq 42 (65)
T 3m0d_C 7 LLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQ 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455666666666665555555565555555554444
No 356
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.56 E-value=1.8e+02 Score=24.67 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016610 299 EKLRQENAALLEKLKSA 315 (386)
Q Consensus 299 ~~L~sEN~~LkeqL~~l 315 (386)
..|+.....|+.+|...
T Consensus 72 s~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 72 VSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 357
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=32.55 E-value=5.6 Score=33.50 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|..++..|..+.+.|..||..|+.++..
T Consensus 63 LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 63 LEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445554444443
No 358
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.44 E-value=65 Score=32.28 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~e 296 (386)
.++.|+.+...|..++..+++
T Consensus 40 ~~~~l~~~~~~l~~~~~~~~~ 60 (405)
T 4b4t_J 40 NVRRLEAQRNALNDKVRFIKD 60 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 359
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.35 E-value=2.2e+02 Score=23.66 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHH
Q 016610 243 ERELKRERRKQS 254 (386)
Q Consensus 243 ErElKR~RRk~s 254 (386)
..|+...||.+.
T Consensus 35 k~Ei~elrr~iq 46 (129)
T 3tnu_B 35 KHEISEMNRMIQ 46 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 360
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.29 E-value=1.8e+02 Score=31.01 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDEN 284 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN 284 (386)
+-..+++|+.++..|+.+.
T Consensus 399 ~p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 3455666666666555543
No 361
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.01 E-value=3.3e+02 Score=27.93 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 289 SEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 289 ~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
..|..|+..++.|+.....|...+..+
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666776666676666554
No 362
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.69 E-value=51 Score=33.42 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
+++..|+.-+...+.....|+..+.....++..|+.....|..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555555555555555555544
No 363
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.67 E-value=2.4e+02 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 261 RSRLRKQAEAEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 261 RSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
.--.+|++-..|+++++++++++...|.++++
T Consensus 54 ~HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 54 TFEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667788888877777776666554
No 364
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.34 E-value=80 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+.+++.|+.+-..|-..+..+++++
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 365
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.12 E-value=1.9e+02 Score=22.67 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
-+..+..|+.++..++.+-.....+...|-.-...|..|....|.-|.
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344555666666666666666666666665555566666666554443
No 366
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.72 E-value=1.3e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
+.|+.+++.|+.....++.++..+...+.++..
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666555543
No 367
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=30.39 E-value=30 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDE---NASLKSEINQLSENSEKLR 302 (386)
Q Consensus 268 a~leeLE~rVe~Le~E---N~~Lr~el~~L~ee~~~L~ 302 (386)
+|+..|+.++..|+.+ +..|......|...+++|+
T Consensus 74 eYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 74 DYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666543 3334444444444444443
No 368
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=30.35 E-value=2.2e+02 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 016610 301 LRQENAALLEKLKS 314 (386)
Q Consensus 301 L~sEN~~LkeqL~~ 314 (386)
|+.....|+.+|..
T Consensus 57 lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 57 LETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 369
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.26 E-value=2e+02 Score=22.66 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
-...|..++..+...+..|..+...|..++.+++
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777764
No 370
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.82 E-value=2.4e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
++|...+.+|-.....|..+-=.|...+..-.-|...|+.++.++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 445555555555555555555555555555566677777777665
No 371
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=29.80 E-value=11 Score=31.22 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
..+..|.-.|++++..|..++..+..||..||+--+
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qK 74 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQK 74 (95)
T ss_dssp ------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777775433
No 372
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.72 E-value=1.8e+02 Score=21.98 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 016610 302 RQENAALLEKLK 313 (386)
Q Consensus 302 ~sEN~~LkeqL~ 313 (386)
+.|...|.++|+
T Consensus 54 eeevkkleeeik 65 (67)
T 1lq7_A 54 EEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 373
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=29.62 E-value=2.9e+02 Score=24.25 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN------------QLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~------------~L~ee~~~L~sEN~~LkeqL~ 313 (386)
||..--.++.+=-...+.|-.+|+.|+.-...||+.+. .+...+..+..+...|.+.|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666777777777777777776665543 444445555555544444443
No 374
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.49 E-value=2.2e+02 Score=22.76 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
+++|+.++...+.+...-+++|..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444433
No 375
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.46 E-value=2.4e+02 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 260 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 298 (386)
Q Consensus 260 RRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~ 298 (386)
+-||.-=-.+.++|+.-+..|+.+|..-...|..|+.++
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333445666666666666666555555555444
No 376
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.44 E-value=52 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
.++++.|+.+.+.|++|...|.+++..++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346777777777777777777666666555
No 377
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.43 E-value=1e+02 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
+.++.|+..++.|+..-+.|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655443
No 378
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=29.12 E-value=70 Score=29.56 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 238 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKS 289 (386)
Q Consensus 238 ~~lqdErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~ 289 (386)
..+..-|++...+.++.-+.-+.-+..-|++++.+|+.++..|++....|..
T Consensus 252 ~~y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (310)
T 3n5l_A 252 DQLLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQ 303 (310)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666555555555556677788888888888877766655443
No 379
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.10 E-value=80 Score=26.25 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLID 282 (386)
Q Consensus 270 leeLE~rVe~Le~ 282 (386)
++.|..++..|+.
T Consensus 98 ~~~L~~~i~~Le~ 110 (117)
T 3kin_B 98 NKALKSVIQHLEV 110 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 380
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=29.01 E-value=1.2e+02 Score=23.50 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 247 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 280 (386)
Q Consensus 247 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L 280 (386)
|+.+|+....++.||-|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566677777888888888888888888777654
No 381
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.65 E-value=2.3e+02 Score=22.81 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=30.5
Q ss_pred cccchHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 239 WIQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 239 ~lqdErElKR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
+-.-|.+.+-...-+..+.+.-. ....|++.+.+++..+++.+.-...+.-|+..+
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33345555544444444333221 225555667777777777766666666666554
No 382
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=28.64 E-value=19 Score=31.36 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 262 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 262 SRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
-|.+=+.+|..|++++..++.|...|++++. -.+++|+.++..+.+.|++
T Consensus 24 ~k~~Leek~~~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 24 ECQALEGRARAASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp ---------------------------CTTT---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554444332211 1233444444444444443
No 383
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.55 E-value=2.3e+02 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L 294 (386)
.|+.++..|+.+...|.+++..+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 384
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.48 E-value=72 Score=22.75 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 016610 281 IDENASLKSEINQLSE 296 (386)
Q Consensus 281 e~EN~~Lr~el~~L~e 296 (386)
......|.++|..|..
T Consensus 15 ~~r~e~LE~Ri~~LE~ 30 (43)
T 2pnv_A 15 NERSEDFEKRIVTLET 30 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3333334443333333
No 385
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=28.47 E-value=4e+02 Score=25.47 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 016610 258 SARRSRLRKQAEAEELSRKV----------------DSLI---DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ-- 316 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rV----------------e~Le---~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq-- 316 (386)
++++++.+=...+++++.-. ..|+ +.-..|+.++......+.....+-..++.+|...+
T Consensus 134 ~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~ 213 (279)
T 3qwe_A 134 ALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQR 213 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677777777777776210 1122 12233666666666777777777777777776543
Q ss_pred -ccccchhhc
Q 016610 317 -LGNKQEIVL 325 (386)
Q Consensus 317 -l~~~~Ev~~ 325 (386)
+.+++++++
T Consensus 214 ~v~~Lr~LI~ 223 (279)
T 3qwe_A 214 IVSHVRKLVF 223 (279)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 344444433
No 386
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=28.43 E-value=1.5e+02 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 280 LIDENASLKSEINQLSEN 297 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee 297 (386)
|+..-.+|...|..|.++
T Consensus 47 L~e~~keLh~~I~~lEeE 64 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTE 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444333
No 387
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.17 E-value=1.3e+02 Score=24.71 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
++..|++|...|..+-..|-+.+..+....+.|.
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443333333
No 388
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.11 E-value=1.2e+02 Score=22.92 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
|...+=.|+.++..|..||..|+.-|.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 389
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.92 E-value=32 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 265 RKQAEAEELSRKVDSLIDENASL 287 (386)
Q Consensus 265 RKqa~leeLE~rVe~Le~EN~~L 287 (386)
.+..+++.|+.+|..|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888877665544
No 390
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=27.61 E-value=67 Score=28.96 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQ 303 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~s 303 (386)
|+..+..+......++.+|..|.+++..|+.
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~ 71 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 71 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5556666655555566666665555555444
No 391
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.47 E-value=1.5e+02 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++++.|+.|...++.+|.+-++++++|..+...|+.-+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665555554443
No 392
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.44 E-value=3.2e+02 Score=24.09 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~~L 294 (386)
.+|++|...|..-.++|..|
T Consensus 46 gKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHH
Confidence 44555554444444444433
No 393
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.41 E-value=1.3e+02 Score=22.75 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016610 271 EELSRKVDSL 280 (386)
Q Consensus 271 eeLE~rVe~L 280 (386)
..|...+..|
T Consensus 32 ~~L~~~~~~l 41 (98)
T 3gwk_C 32 NLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 394
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.23 E-value=94 Score=26.79 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHH
Q 016610 247 KRERRKQSNRESAR 260 (386)
Q Consensus 247 KR~RRk~sNRESAR 260 (386)
|.+-..++||.-+-
T Consensus 9 K~Eiq~L~drLD~~ 22 (123)
T 2lf0_A 9 KNEIKRLSDRLDAI 22 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 395
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.08 E-value=1.3e+02 Score=28.29 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
++++|+++..|+....++.+..+....++..++.....|-..+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666666666666666666566666555555554444
No 396
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.08 E-value=2e+02 Score=25.30 Aligned_cols=12 Identities=8% Similarity=0.338 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLI 281 (386)
Q Consensus 270 leeLE~rVe~Le 281 (386)
+++|+.-|+.|+
T Consensus 30 VDDLQD~VE~LR 41 (141)
T 3okq_A 30 VDDLQDVIEIMR 41 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 344444444443
No 397
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=26.94 E-value=1e+02 Score=33.65 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=18.9
Q ss_pred CChh-hhhhhcCCCCCCCCCCCCCCCCCCCCCCCccC
Q 016610 30 TDWA-AMQAYYGPRVAIPPYYNSPIASGHAPQPYMWG 65 (386)
Q Consensus 30 pDWs-~mQAYygp~~~~pp~f~s~vas~~~phPYmWG 65 (386)
.||. +=|-|.|- ++|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG~--pIP~w~~~~-----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWGH--QIPAWYCED-----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSSC--CCCCEEETT-----TCCEECCC
T ss_pred cceeEecccCCCc--ccCceecCC-----CCEEEEec
Confidence 6887 77989864 677666431 12467775
No 398
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.75 E-value=43 Score=33.73 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~L 308 (386)
|+.++..|+.|+..|..++..+++++..++.+...+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555556666666666666666655555554433
No 399
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.75 E-value=1.6e+02 Score=24.99 Aligned_cols=27 Identities=7% Similarity=0.284 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
|..|+..+.+++.+...|...|..++.
T Consensus 97 L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 97 LQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 400
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=26.46 E-value=1.7e+02 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
++...|.+||.+|+.-......++..+-.++..
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~ 39 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555555555555444433
No 401
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.45 E-value=2e+02 Score=28.68 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 016610 250 RRKQSNRESARRSRLRKQAEAEELSRKVDSLID------ENASLKSEINQL 294 (386)
Q Consensus 250 RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~------EN~~Lr~el~~L 294 (386)
++..+.|....+......++++.|+.++.++.. |...|..++..|
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L 239 (517)
T 4ad8_A 189 REAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRL 239 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 333344433333333344455666666666655 455555555544
No 402
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=26.39 E-value=4e+02 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 258 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 258 SARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L 294 (386)
..+..+.+.+....++..+|...-.+...++.++..+
T Consensus 341 ~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 377 (446)
T 3pik_A 341 RQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQ 377 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555543
No 403
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=26.31 E-value=2.6e+02 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
+|+.--+.++.-|..|..++..|.
T Consensus 187 el~~ak~~ye~ln~~L~~eLp~l~ 210 (251)
T 2fic_A 187 ELIKAQKVFEEMNVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666663
No 404
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=26.15 E-value=1.3e+02 Score=27.25 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 016610 298 SEKLRQENAALLEK 311 (386)
Q Consensus 298 ~~~L~sEN~~Lkeq 311 (386)
+.++.+|-..+|.+
T Consensus 62 ~lR~~Ae~eN~rkR 75 (197)
T 1dkg_A 62 ILRVKAEMENLRRR 75 (197)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 405
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.10 E-value=5.6e+02 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 255 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 255 NRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
|-|-|---|+|+. +++...++..+++..+.|+..+..
T Consensus 345 naevae~~~lrQR--lddArNEItsaeSaInslqaqvSa 381 (602)
T 1cii_A 345 NAEVAEWDKLRQR--LLDARNKITSAESAVNSARNNLSA 381 (602)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565555555522 444444444444444444433333
No 406
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.09 E-value=2.9e+02 Score=23.06 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ 293 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~~ 293 (386)
|+|-.|..|.+...+|--. .+--.-+-+|..+|..|+...+.+..+...
T Consensus 19 e~Eta~L~~al~~edsd~E--~~~~rilhdl~seV~~LK~dv~~~L~k~~~ 67 (101)
T 4aj5_1 19 DCETARLQRALDGEESDFE--DYPMRILYDLHSEVQTLKDDINILLDKARL 67 (101)
T ss_dssp HHHHHHHHHHHHTCSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554332 233444556666666666555555444333
No 407
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.82 E-value=1.2e+02 Score=27.38 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 259 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN 292 (386)
Q Consensus 259 ARRSRlRKqa~leeLE~rVe~Le~EN~~Lr~el~ 292 (386)
|-|+-.+.+.+++.||.++...+.++..+..++.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556666665555555555555543
No 408
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=25.70 E-value=2.4e+02 Score=22.08 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 290 EINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 290 el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
+|-.+.+++-..-.+...++.+|+.++
T Consensus 39 ~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 39 RIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566677776654
No 409
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.32 E-value=86 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 291 INQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 291 l~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
++.|+...+.|...|-.-+++++.|+
T Consensus 3 vqalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555566666666677666665
No 410
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=25.23 E-value=2.5e+02 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 016610 282 DENASLKSEINQL 294 (386)
Q Consensus 282 ~EN~~Lr~el~~L 294 (386)
.-|..|+..+..|
T Consensus 26 qsNq~mkeR~eeL 38 (70)
T 3brv_B 26 QSNQILRERCEEL 38 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 411
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.07 E-value=1.7e+02 Score=25.45 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 282 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 282 ~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+....|..|+..+.+++.+...|...|..++..+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554
No 412
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.75 E-value=83 Score=25.56 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDEN 284 (386)
Q Consensus 270 leeLE~rVe~Le~EN 284 (386)
+..|+.+++.|+.+.
T Consensus 6 l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 6 LANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 413
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.61 E-value=1.8e+02 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQENAALLEKL 312 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN~~LkeqL 312 (386)
.|+.....|-+.+..|+.|-=.|..++
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kv 88 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKV 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444444554444444433
No 414
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=24.55 E-value=4.3e+02 Score=24.56 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEK 300 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~ 300 (386)
.+++.....+..+......++..+++++..
T Consensus 347 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~ 376 (446)
T 3pik_A 347 VNYEQKIQNAFKEVADALALRQSLNDQISA 376 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555444443
No 415
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.49 E-value=3.7e+02 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+-..+..++..|++++...+.-...|..+|..|
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554
No 416
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=24.38 E-value=3.2e+02 Score=26.69 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLK 288 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr 288 (386)
++.|..+.+.+...-..+.
T Consensus 226 le~L~~ere~~~e~~a~~a 244 (302)
T 3ibp_A 226 IESLHAEREVLSERFATLS 244 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444443333333
No 417
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.38 E-value=74 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016610 292 NQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 292 ~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
..|++++++|..|...|+..|..
T Consensus 59 AKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 418
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.30 E-value=1.9e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 267 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 267 qa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
+.+|+-++.++.+|+..-.....++.+.+.++.+|.
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555666666666555555555555555444443
No 419
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.23 E-value=1.7e+02 Score=22.87 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSLIDE 283 (386)
Q Consensus 269 ~leeLE~rVe~Le~E 283 (386)
.|++|+..|+.|...
T Consensus 33 ~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 33 NLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 344444444444444
No 420
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=24.15 E-value=48 Score=28.93 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 274 SRKVDSLIDENASLKSEINQL 294 (386)
Q Consensus 274 E~rVe~Le~EN~~Lr~el~~L 294 (386)
-.+++.|.++...|.+++.+|
T Consensus 104 laqLe~ls~qL~~ls~~v~~L 124 (140)
T 3iyn_Q 104 LAQLDSLTRELNVVSQQLLDL 124 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333333333
No 421
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.07 E-value=5.6e+02 Score=26.69 Aligned_cols=6 Identities=33% Similarity=0.944 Sum_probs=2.9
Q ss_pred CCCccC
Q 016610 60 QPYMWG 65 (386)
Q Consensus 60 hPYmWG 65 (386)
.-|||+
T Consensus 77 gi~~~~ 82 (592)
T 1f5n_A 77 GIWMWC 82 (592)
T ss_dssp SEEEEE
T ss_pred EEEEee
Confidence 345554
No 422
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=24.03 E-value=16 Score=35.56 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSE 296 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~e 296 (386)
+++.+|+.+..+...|..+|.+|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~~ 62 (385)
T 3p8q_A 38 QLQSDLMKVQEELTKSGTRLFDLEQ 62 (385)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 423
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.69 E-value=2.2e+02 Score=20.87 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 264 LRKQAEAEELSRKVDSLIDENASLKSEI 291 (386)
Q Consensus 264 lRKqa~leeLE~rVe~Le~EN~~Lr~el 291 (386)
+||.+.+++| ..|+.+...|+.++
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445555544 34555555555443
No 424
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.59 E-value=2.7e+02 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 283 ENASLKSEINQLSENSEKLRQENAALLEKLK 313 (386)
Q Consensus 283 EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~ 313 (386)
+...|++.+..+.-....|+.+...|+++|.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333333444444444444443
No 425
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.50 E-value=2.6e+02 Score=21.69 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 279 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 279 ~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|+.....|..++..|..++..++.+...|+.+|..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777777777777777776654
No 426
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=23.42 E-value=2.7e+02 Score=22.55 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
+.+|+........+...|....++|++||..|-.-
T Consensus 28 lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivs 62 (97)
T 1no4_A 28 LQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeee
Confidence 34455555566666666666666666666665443
No 427
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.17 E-value=2.2e+02 Score=20.81 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 280 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 280 Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.-.+...|.+++..|++++= .....+|+.+|.++.
T Consensus 11 ~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 11 CVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33344444444554444331 112334444444443
No 428
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.08 E-value=1.1e+02 Score=27.18 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLR 302 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~ 302 (386)
.|+.+|+.|+.....-..+|..|++++..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555555554444444444444444443
No 429
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=22.99 E-value=4.4e+02 Score=24.09 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016610 246 LKRERRKQSNRESARRSRLRKQAEA----EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 318 (386)
Q Consensus 246 lKR~RRk~sNRESARRSRlRKqa~l----eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~lql~ 318 (386)
+-+.--++.|+.+....|..|-.++ ..+-.+.+.+......-...+......++.|+....++.++|..|+.+
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~ 146 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPE 146 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444555556666666666666665 222222222222222222333445667777888888888888877533
No 430
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=22.80 E-value=1.6e+02 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLK 288 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr 288 (386)
+..+.++++++.|..+...|.
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le 158 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLE 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 431
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.77 E-value=1.8e+02 Score=21.60 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 016610 270 AEELSRKVDSL 280 (386)
Q Consensus 270 leeLE~rVe~L 280 (386)
+..|...|..|
T Consensus 32 l~~L~~~v~~L 42 (99)
T 3zbh_A 32 IARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 432
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.75 E-value=1.6e+02 Score=26.29 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.++..++.++..++.+...++.+|..+
T Consensus 104 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 104 LADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444555555555555544
No 433
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.67 E-value=2.1e+02 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 289 SEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 289 ~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
.+|-.+.+++-..-.+...++.+|+.++
T Consensus 50 ~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 50 ENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555556666666554
No 434
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.61 E-value=1.4e+02 Score=26.16 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.0
Q ss_pred hhhHhhhhcC
Q 016610 367 GAKLHQLLDA 376 (386)
Q Consensus 367 ~~kl~qll~~ 376 (386)
..-+.|+||.
T Consensus 158 d~~v~kVl~E 167 (179)
T 2gd5_A 158 EMEIDRILFE 167 (179)
T ss_dssp TTHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 4456777764
No 435
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.58 E-value=49 Score=34.35 Aligned_cols=6 Identities=50% Similarity=0.517 Sum_probs=3.1
Q ss_pred hhhhcC
Q 016610 35 MQAYYG 40 (386)
Q Consensus 35 mQAYyg 40 (386)
+|+-||
T Consensus 130 lQae~G 135 (575)
T 2i1j_A 130 VQARHG 135 (575)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 455555
No 436
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=22.49 E-value=51 Score=31.78 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 280 (386)
Q Consensus 243 ErElKR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L 280 (386)
+...|...++...+++.||-|.|--.++.+|..-|-.-
T Consensus 5 ~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~ 42 (387)
T 4f3l_B 5 EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 42 (387)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCC
Confidence 34455556666777888999988899999999877754
No 437
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.46 E-value=1.7e+02 Score=25.27 Aligned_cols=9 Identities=0% Similarity=-0.267 Sum_probs=3.8
Q ss_pred ccccccccc
Q 016610 354 EEGGHLFEK 362 (386)
Q Consensus 354 ~~~~~~~~~ 362 (386)
.++|-||-+
T Consensus 98 ~e~CCfyin 106 (125)
T 4g2k_A 98 GPDCSIGIE 106 (125)
T ss_dssp CGGGGCCCC
T ss_pred cccceeecc
Confidence 344444433
No 438
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.45 E-value=2.2e+02 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016610 286 SLKSEINQLSE 296 (386)
Q Consensus 286 ~Lr~el~~L~e 296 (386)
.|.+++..|++
T Consensus 90 ~l~~~i~~l~~ 100 (278)
T 1r8e_A 90 QIREKLDFLSA 100 (278)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 439
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=22.42 E-value=80 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 290 EINQLSENSEKLRQENAA 307 (386)
Q Consensus 290 el~~L~ee~~~L~sEN~~ 307 (386)
++.+|+.+-..|..|...
T Consensus 45 ~l~~LKk~KL~LKDeI~~ 62 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHS 62 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 444444444444433333
No 440
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.36 E-value=1.7e+02 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016610 287 LKSEINQLSENSEKLRQENAAL 308 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~L 308 (386)
|+..+..|-+.+..|+.|-=.|
T Consensus 47 L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4444444444444444443333
No 441
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=22.28 E-value=2e+02 Score=23.46 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016610 272 ELSRKVDSLI 281 (386)
Q Consensus 272 eLE~rVe~Le 281 (386)
.|+++++.|.
T Consensus 115 ~l~~~~~~l~ 124 (139)
T 3eff_K 115 AYTRTTRALH 124 (139)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 442
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.05 E-value=1.3e+02 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 016610 269 EAEELSRKVDSL 280 (386)
Q Consensus 269 ~leeLE~rVe~L 280 (386)
.+..|...+..|
T Consensus 31 ~l~~L~~~~~~L 42 (93)
T 4ioe_A 31 QINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 443
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.93 E-value=35 Score=34.08 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEIN 292 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~ 292 (386)
.+++.|+++...+.++|.
T Consensus 44 ~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 44 KRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 444
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.83 E-value=1.5e+02 Score=20.49 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 275 RKVDSLIDENASLKSEIN 292 (386)
Q Consensus 275 ~rVe~Le~EN~~Lr~el~ 292 (386)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777766666654
No 445
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=21.68 E-value=3.4e+02 Score=24.52 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 304 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sE 304 (386)
..-|+.+-+.|..|-..+..++..+++++.++..+
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~ 67 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQT 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655555554433
No 446
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=21.60 E-value=46 Score=32.52 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=5.5
Q ss_pred CCcchHHHhh
Q 016610 332 TPVSTENLLS 341 (386)
Q Consensus 332 ~p~~~e~lls 341 (386)
.++++.+++.
T Consensus 74 ~~~dC~~i~~ 83 (328)
T 1fzc_B 74 SGKECEEIIR 83 (328)
T ss_dssp CBSSHHHHHH
T ss_pred CCCCHHHHHh
Confidence 3455666654
No 447
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=21.59 E-value=1.8e+02 Score=26.85 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=4.6
Q ss_pred HHHHHHHHh
Q 016610 307 ALLEKLKSA 315 (386)
Q Consensus 307 ~LkeqL~~l 315 (386)
.++.+|...
T Consensus 75 ~~kaqL~sV 83 (218)
T 3frt_A 75 ASKAHMNSV 83 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555554
No 448
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.57 E-value=1.7e+02 Score=22.00 Aligned_cols=32 Identities=6% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 266 KQAEAEELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 266 Kqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+-+.|++|+.+.+.|...-...+..-.+|..+
T Consensus 30 RGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 30 RGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777766666666655555443
No 449
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.54 E-value=3.9e+02 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLS 295 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ 295 (386)
.+|+..++++..+...|..++..+.
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il 29 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAIL 29 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 450
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.54 E-value=1.4e+02 Score=29.15 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=5.8
Q ss_pred hhHhhhhc
Q 016610 368 AKLHQLLD 375 (386)
Q Consensus 368 ~kl~qll~ 375 (386)
.|||+|-.
T Consensus 161 e~ih~LT~ 168 (323)
T 1lwu_B 161 KTVHQLTK 168 (323)
T ss_dssp HHHHHHHH
T ss_pred cceeeecC
Confidence 67888764
No 451
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.33 E-value=2.8e+02 Score=21.22 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 314 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~ 314 (386)
.|..+|..|+.+|..++.-++.-+..-..|+.=...+..+..+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 452
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.31 E-value=20 Score=36.14 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 016610 291 INQLSENSEKLRQE 304 (386)
Q Consensus 291 l~~L~ee~~~L~sE 304 (386)
+..|.+++.+|+.|
T Consensus 379 ~~~le~~~~~~~~~ 392 (427)
T 2qag_B 379 KKKLEDKKKSLDDE 392 (427)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 453
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.27 E-value=3.2e+02 Score=21.96 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 268 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 268 a~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
..+..|+.++..++.+-.....+...|-.-...|..|....+
T Consensus 44 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 44 RMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 454
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.25 E-value=1.4e+02 Score=23.56 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 273 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 273 LE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
|-..|+.|+.....+..|+..++..+..|+.+.+.|.
T Consensus 6 l~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 6 LTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 4445666666666777777666665555555554444
No 455
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=21.24 E-value=1.3e+02 Score=20.55 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016610 276 KVDSLIDENASLKSEINQ 293 (386)
Q Consensus 276 rVe~Le~EN~~Lr~el~~ 293 (386)
..+.|+..+..|+.+++.
T Consensus 15 ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 15 EEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444455544443
No 456
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.93 E-value=21 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016610 270 AEELSRKVDSLIDENASLK 288 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr 288 (386)
.+++.++++.|+++..+|+
T Consensus 258 ~~~~~~~~~~l~~~~~~l~ 276 (285)
T 3rvy_A 258 EDNINNEIIKLREEIVELK 276 (285)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 457
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.85 E-value=2e+02 Score=21.16 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEKLRQEN 305 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~L~sEN 305 (386)
.|...+...+..+.+|+.||
T Consensus 18 eler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 18 ELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 34444444444444555554
No 458
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.84 E-value=2.3e+02 Score=20.08 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 016610 277 VDSLIDENAS 286 (386)
Q Consensus 277 Ve~Le~EN~~ 286 (386)
+.+|+..|.+
T Consensus 12 iqeleernae 21 (46)
T 3he4_B 12 IQELEERNAE 21 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHH
Confidence 3333333433
No 459
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.83 E-value=2.7e+02 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 278 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 278 e~Le~EN~~Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
+.|++...+|+.....|.+.+.....+|..|..++..|
T Consensus 208 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 208 DKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444444444444444455555555554
No 460
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.78 E-value=1.5e+02 Score=25.02 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016610 287 LKSEINQLSENSEKLRQENAALLEKLKSA 315 (386)
Q Consensus 287 Lr~el~~L~ee~~~L~sEN~~LkeqL~~l 315 (386)
|..++..|.+++..|+.....|...|..+
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455555444
No 461
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=20.71 E-value=81 Score=22.92 Aligned_cols=30 Identities=33% Similarity=0.391 Sum_probs=15.1
Q ss_pred CCccccchHHHHHHHHHHHhHHHHHHHHHH
Q 016610 236 PETWIQNERELKRERRKQSNRESARRSRLR 265 (386)
Q Consensus 236 ~e~~lqdErElKR~RRk~sNRESARRSRlR 265 (386)
+|+.-++.+.++|+||..+=+...--+|+-
T Consensus 12 ~~lsa~EkaRLrRERR~aKi~~G~assRLN 41 (46)
T 3sjd_D 12 SELTEAEKRRLLRERRQKKFSNGGASSRLN 41 (46)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 444445666666777666554443444443
No 462
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.70 E-value=3.1e+02 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 272 ELSRKVDSLIDENASLKSEINQLSEN 297 (386)
Q Consensus 272 eLE~rVe~Le~EN~~Lr~el~~L~ee 297 (386)
+|-.++..-+.....-++.+..|++.
T Consensus 61 e~DArLAeAka~~~Ka~~~~~el~~~ 86 (98)
T 4fm3_A 61 ELDARLAESKVLTQKSKDQLGELDKS 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444334444444333
No 463
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=20.55 E-value=2.1e+02 Score=19.43 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 271 EELSRKVDSLIDENASLKSEINQLSENSEKL 301 (386)
Q Consensus 271 eeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L 301 (386)
..|.++|..|+.+---|.-++..|+++...|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666556666666665554443
No 464
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.47 E-value=5e+02 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 263 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 309 (386)
Q Consensus 263 RlRKqa~leeLE~rVe~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lk 309 (386)
=.+++.++..++.-|..|+.....+..+.......+..++.|-..|+
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~ 404 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIR 404 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555555555555555444444443
No 465
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.37 E-value=1.9e+02 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016610 288 KSEINQLSENSEKLRQENAALLEKLKSAQ 316 (386)
Q Consensus 288 r~el~~L~ee~~~L~sEN~~LkeqL~~lq 316 (386)
..++...+.++..++.+...++.+|..++
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~ 125 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETAR 125 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777654
No 466
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.29 E-value=4.4e+02 Score=23.14 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016610 273 LSRKVDSLI 281 (386)
Q Consensus 273 LE~rVe~Le 281 (386)
++.++..|+
T Consensus 75 yEeqIk~L~ 83 (155)
T 2efr_A 75 YEEEIKVLS 83 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 467
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.27 E-value=2.3e+02 Score=21.02 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 016610 271 EELSRKVDSL 280 (386)
Q Consensus 271 eeLE~rVe~L 280 (386)
.+|...+..|
T Consensus 30 ~~L~~~~~~L 39 (97)
T 2vs0_A 30 SDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 468
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.22 E-value=2e+02 Score=24.27 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016610 277 VDSLIDENASLKSEINQLSENSEKLRQENAALLEK 311 (386)
Q Consensus 277 Ve~Le~EN~~Lr~el~~L~ee~~~L~sEN~~Lkeq 311 (386)
.+.|+.....|.+++..|++....|......+++.
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 469
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=20.16 E-value=1.6e+02 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016610 286 SLKSEINQLSENSEK 300 (386)
Q Consensus 286 ~Lr~el~~L~ee~~~ 300 (386)
.|.+++..|.+++.+
T Consensus 109 ~ls~qL~~ls~~v~~ 123 (140)
T 3iyn_Q 109 SLTRELNVVSQQLLD 123 (140)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444333333
No 470
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=20.01 E-value=2.5e+02 Score=23.96 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHhhccccch
Q 016610 270 AEELSRKVDSLIDENASLKSEINQL---S--ENSEKLRQENAALLEKLKSAQLGNKQE 322 (386)
Q Consensus 270 leeLE~rVe~Le~EN~~Lr~el~~L---~--ee~~~L~sEN~~LkeqL~~lql~~~~E 322 (386)
.+||..++.+|+.|...|+-+...= . .++..++...+.++.-|.+-+...+++
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~ 72 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKD 72 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888777777655432 1 344555666666666666555555444
Done!