BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016612
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/386 (81%), Positives = 350/386 (90%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
M+++EE VSTLL+N N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
ES CFTSGMAAL+AVTHL+ GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
VKRVNT LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 241 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 300
W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378
Query: 301 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 360
V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 361 VRISVGIEDVNDLISDLDKALRTGPL 386
VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 236/378 (62%), Gaps = 6/378 (1%)
Query: 9 VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
++TL ++ DP GA+ P+Y T+T+ Q S E+ ++Y+R+ NPTR A E
Sbjct: 20 LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68 XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNT 126
F SGMAA + V LL G +VA DDLYGGT RL RV +T G+ V+
Sbjct: 80 EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186
D +AI TK+VW+E+PTNP ++ DI IA +A HG L +VDN+ SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKELYFLQNAEGSGLAPFDCWICL 244
L LGAD+V+HSATK++ GHSD++ G+ AV G+ LA+++ FLQN+ G PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
RG+KT+ LR+ +NA +A++L +HP ++KV Y GL HP H L Q G G ++S
Sbjct: 259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSI 318
Query: 305 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
L G +K E T+ F++ S G V+SL++ P M+HASIPV R+ G+++ LVR+
Sbjct: 319 VLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRL 378
Query: 364 SVGIEDVNDLISDLDKAL 381
SVGIED+ DL DL++AL
Sbjct: 379 SVGIEDLGDLRGDLERAL 396
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 216/344 (62%), Gaps = 2/344 (0%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 41 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
+THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P TKLVW
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
+E+PTNP Q++ DI A + H HG ++LV DN+ MSP RPL LGADI M+SATK++
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK N
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 280
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 322
+A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++ K F
Sbjct: 281 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 340
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 341 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 216/344 (62%), Gaps = 2/344 (0%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 37 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
+THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P TKLVW
Sbjct: 97 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 203
+E+PTNP Q++ DI A + H HG ++LV DN+ MSP RPL LGADI M+SATK++
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 263
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK N
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 276
Query: 264 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 322
+A+FL S+P V+KV Y GLP HP HEL Q G G V ++ G+L ++ ++ K F
Sbjct: 277 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 336
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 366
++ S G +SL +P M+HAS+ R G+++ L+R+SVG
Sbjct: 337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 232/390 (59%), Gaps = 10/390 (2%)
Query: 2 SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
+++E +T ++ D +G++ P+ + TFKQ S A G Y+Y+RS NP R+ L
Sbjct: 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
E F+SG A A + L G V+ D+YGGT R ++V GV
Sbjct: 61 ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
N L+++ I TKLVW+E+PTNP ++ DI+K+A++ H A +L+VDN
Sbjct: 121 TSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
+ +SP +S PL GADIV+HSATK+I GHSDV+ GVLA + L + L FLQNA G+ +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQA 295
PFD W+ RG+KT+ LRV + +A KIAEFLA+ V VNY GL HP +++ Q
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH 299
Query: 296 KGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 352
+ A G ++SF + G + +T+ F++ S G ++SL+ +P M+H IP E R+
Sbjct: 300 RDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEARE 359
Query: 353 ARGLTEDLVRISVGIEDVNDLISDLDKALR 382
A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 360 ASGVFDDLVRISVGIEDTDDLLEDIKQALK 389
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 231/394 (58%), Gaps = 12/394 (3%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS TK+I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 222/378 (58%), Gaps = 7/378 (1%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
G++T ++ DP GA++ P+Y ++TF Q G Y+Y R+GNPTR ALE+
Sbjct: 17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66 XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
F+SGMAA A+ +L G+ +V DD YGGT RL+ +V V V
Sbjct: 77 AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
DLD V +AI P T+L+WVE+PTNP I DI IA++ A +LVDN+ SP L
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
+PL LGAD+V+HS T +I GHSDV+ G L E L + FLQN G+ PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 245 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 304
RG+KT+ LR+++ +NA +AEFLA HP + V Y GLP HPGH + Q +G G ++S
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSV 316
Query: 305 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 363
+ ++ + T F + S GSV+SLI P M+HAS + + +DLVR+
Sbjct: 317 RMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRL 373
Query: 364 SVGIEDVNDLISDLDKAL 381
SVGIEDV DL+ DL +AL
Sbjct: 374 SVGIEDVADLLDDLKQAL 391
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 231/394 (58%), Gaps = 12/394 (3%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V+ V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 230/394 (58%), Gaps = 12/394 (3%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 289
G ++PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 290 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 348
L Q G ++SF + G L + ++ + + + VS G ++LI P M+H+ +
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 349 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 382
E R G+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 229/387 (59%), Gaps = 12/387 (3%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
ALE SG++A+ + L G+ IV+ +YG T LS PK
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
G+ V+ V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +EL Q
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 297 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
G ++SF + G L + ++ + + + VS G ++LI P M+H+ + E R G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 356 LTEDLVRISVGIEDVNDLISDLDKALR 382
+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 228/387 (58%), Gaps = 12/387 (3%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
ALE SG++A+ + L G+ IV+ +YG T LS PK
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 296
PF+ W+ LRGVKT+ +R+E+ +NA KIA FL HP + +V Y GL HP +EL Q
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 297 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 355
G ++SF + G L + ++ + + + VS G ++LI P M+H+ + E R G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 356 LTEDLVRISVGIEDVNDLISDLDKALR 382
+T+ L+R+SVG+ED D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 214/363 (58%), Gaps = 9/363 (2%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
K+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++ +
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 319
N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 379
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 380 ALR 382
AL
Sbjct: 385 ALE 387
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 213/363 (58%), Gaps = 9/363 (2%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 259
+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++ +
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 260 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 319
N K+A+FL H ++ KVN+ GL PGH++ Q G GS F S +K ++E
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 320 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 379
K ++ VS G V +LI P M+HA++P + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 380 ALR 382
AL
Sbjct: 385 ALE 387
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 229/384 (59%), Gaps = 12/384 (3%)
Query: 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
+T ++ + + D +GA P+YQT+TF + + G Y YTR GNPT LE
Sbjct: 9 ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62 SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
+SGM A+AA V +L G+ +++ + LYG T L K G+
Sbjct: 69 GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIM 179
V +NT EV + P TK+V+ E+P NP +I D+ ++ + AH+ G L++ DN+
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 238
SP+++ P++ G D+V+HSATK+I GH+DV+AG++ K + L + + +++ GS ++P
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 239 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 298
D W+ RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G +H GH++ Q +
Sbjct: 249 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 308
Query: 299 GSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 357
GS+++F+ S +K +++ K ++ VS G +SLI P M+HA +P E R+A G+T
Sbjct: 309 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368
Query: 358 EDLVRISVGIEDVNDLISDLDKAL 381
+ ++R+SVGIED ++LI+D + L
Sbjct: 369 DGMIRLSVGIEDADELIADFKQGL 392
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 228/391 (58%), Gaps = 18/391 (4%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSATK+++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 227/391 (58%), Gaps = 18/391 (4%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 227/391 (58%), Gaps = 18/391 (4%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 292
+ L+P D + +RG+KT+ LR+++ NAQ +AEFLA P+V+ ++Y GL P + L
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 293 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
Q G +++F L G + + + + FS VS G +SL P M+H+S E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKALR 382
G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 210/367 (57%), Gaps = 2/367 (0%)
Query: 18 NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
N+ + YG + P++ ++T+ E +DY+R GNPTRD ++
Sbjct: 15 NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78 SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
+GM+A+ VT + L G+ +VA D YGG+ RL + + V V+ D + +A+
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 196
KLV VESP+NP ++ DI KI +A GA+ +VDN+ +SP L PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
S T ++ GHSDV+AGV+ K + EL + N G FD ++ LRG++T+ R+E
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 257 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 315
Q NAQ I ++L + P VKK+ + LPE+ GHE+ Q KG G++LSF L G +
Sbjct: 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRF 314
Query: 316 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 375
+ F++ S G V+SLIS M+HA + E R A G++E L+RIS GIED DLI+
Sbjct: 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA 374
Query: 376 DLDKALR 382
DL+ R
Sbjct: 375 DLENGFR 381
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 192/307 (62%), Gaps = 3/307 (0%)
Query: 78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
SGM A+AA V L G+ +++ D LYG T L K GV V ++ + +
Sbjct: 21 SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL 80
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVM 195
P T++V+ E+P NP ++ DI + A +L +VDN+ SP+L+ PL+LG DIV+
Sbjct: 81 KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
HSATK+I GH+DV+AG++ + + +AK + +++ G+ ++P D W+ RG T+ +RV
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV 200
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH 314
++ +NAQK+AEFL H VKKV Y GLP+HPGHE+ Q K GS+++F L +K
Sbjct: 201 KRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKK 260
Query: 315 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 374
V++ S+ VS G +SLI P M+HA +P E R+A GLT++L+R+SVG E+V D+I
Sbjct: 261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDII 320
Query: 375 SDLDKAL 381
DL +AL
Sbjct: 321 DDLKQAL 327
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 199/359 (55%), Gaps = 7/359 (1%)
Query: 30 LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
+Y +A + S A E Y Y+R GNPT E SGMAA+ ++
Sbjct: 55 VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147
LLG G+ +VA L+G + S + P+ GV V+ DL + A+ T+ V+ E+
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 207
P+NP Q + DI + E+AHA GA +++DN +P+L + LG D+V++S T I G
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 267
V+ G + E + + L G ++ F+ W+ L+G++T+A+RV+ +AQ+IAEF
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 268 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYF 322
L HP V+ V Y LP HP ++L Q G G+V++F L ++K V++ +
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI 354
Query: 323 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
I+ + G KSL++ P +H ++ E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 192/368 (52%), Gaps = 12/368 (3%)
Query: 25 ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
A++TP+ T+ + +E ++Y R GNPT LE
Sbjct: 76 AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77 TSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
SGM A+ + L+ G IV D Y T + + PK G+ ++ D+ + A
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 136 IG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
+ L + ESPTNP + DI ++++ H GAL+ +D + +P+ + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
+HSATKF+ GH+DV+AG ++ +L E+ L + G L P ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 255 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 313
++Q A ++AE L +HP+V+ V Y GL HP H + Q G G +SF + G L +
Sbjct: 315 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTA 374
Query: 314 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 373
V+ K I SFG +S++ P MS+ + R G+ ++LVR S G+ED +DL
Sbjct: 375 KFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDL 434
Query: 374 ISDLDKAL 381
+D+ +AL
Sbjct: 435 KADILQAL 442
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 188/397 (47%), Gaps = 44/397 (11%)
Query: 29 PLYQTAT--FKQPS------ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P+Y T + FK P A + Y+R NPT D LE SG
Sbjct: 24 PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH 83
Query: 81 AA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGP 138
AA A+T L G+ IV+ +LYGGT + G+ V+ + + +E +
Sbjct: 84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE 143
Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 197
T+ WVES NP I D+ +A+ A G L+VDN+ M L RPL GA +V HS
Sbjct: 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203
Query: 198 ATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA--- 230
TK++ GH V+AG + G RL + EL F+ A
Sbjct: 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263
Query: 231 ----EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 286
+G L PF+ W+ L G++T++LR E+ +N +A +L P+V VNY GLP HP
Sbjct: 264 GLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHP 323
Query: 287 GHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 344
H+ KG G+VL+F L G +K + K S + G ++L P +H+
Sbjct: 324 HHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHS 383
Query: 345 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
+ E + G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 384 QLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 196/390 (50%), Gaps = 29/390 (7%)
Query: 21 DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
D +GAL TP+Y A F+ ++ E + Y+RS NPT + LE
Sbjct: 40 DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73 XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
SGMAA++ A+ L G+ +V D L+G T L + P G+ V+ V+ D
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
V A TKL+++E+ +NP+ Q+ D+ ++++ HA G L+VD ++ P L LG
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 231
DI + S+TKFI+G + GVL G K L FL A
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 232 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 291
G L+P + ++ G++TMALR+E+ NAQ++A +L S P+VK VN+ LP+ P + +
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 292 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 351
Q + AGS+L+F S S ++ K + KSLI P + +A E R
Sbjct: 340 KRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEER 399
Query: 352 QARGLTEDLVRISVGIEDVNDLISDLDKAL 381
++ ++R+SVGIE++ DL D+ +AL
Sbjct: 400 LKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 188/398 (47%), Gaps = 40/398 (10%)
Query: 21 DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
DP+GA+ P+Y A + ++ AT G Y Y R +PT ALE
Sbjct: 15 DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73 XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
SG AA A L G+E+VA L+G T L +V GV V+ V+ + +
Sbjct: 74 AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
V A+ T+ V+VE+ NP + D+ +A +A G L+VDN+ + L RPL G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 191 ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ--------------------- 228
A +V+ S T + +GH V+ G VL+ + E FLQ
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 229 -----NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 283
+ G L+PF+ ++ +G++T+ALRV + + A+ +AE L HP+VK + Y GLP
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 284 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 343
E P H G +L+ G L + + + + G ++L+ P +H
Sbjct: 313 EDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTH 371
Query: 344 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 381
+ + E R G+T LVR+SVG+ED DL++ ++AL
Sbjct: 372 SRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL 409
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 19/346 (5%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 51 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
+ A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARC 229
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
++L G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+
Sbjct: 230 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 289
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
LP GHE G+ + SF+ ++ + ++ FS+ S+G +SLI
Sbjct: 290 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 348
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 378
A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 349 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 170/349 (48%), Gaps = 19/349 (5%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 71 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 130
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 131 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 190
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
+ A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G AV R
Sbjct: 191 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARC 249
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
++L G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+
Sbjct: 250 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 309
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
LP GHE G+ + SF+ ++ + ++ FS+ S+G +SLI
Sbjct: 310 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 368
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDKAL 381
A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 369 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 411
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 169/346 (48%), Gaps = 19/346 (5%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 51 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220
+ A++++DN+ + VL + L+ G D+ + +AT ++ GHSD M G AV R
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARC 229
Query: 221 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 280
++L G + +I RG++T+ +R+ + +++ K+AE+LA HP+V +VN+
Sbjct: 230 WEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHP 289
Query: 281 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISM 337
LP GHE G+ + SF+ ++ + ++ FS+ S+G +SLI
Sbjct: 290 ALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL- 348
Query: 338 PCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 378
A+ P + R + L+R+ +G+EDV+DLI+DLD
Sbjct: 349 ------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 113 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
V KTG V+K V + DL+ + + TKLV V +N + +IA++AH
Sbjct: 138 VAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ 197
Query: 168 HGALLLVDNSIMSP 181
GA +LVD +P
Sbjct: 198 AGAKVLVDACQSAP 211
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
S I T+LV V S + + D+R + ++ H GAL++VD+S +P
Sbjct: 160 SLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAP 207
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------TCDLDEVAS 134
A AA+T L+ G+E++ D Y ++ +G +VKR+ D E A+
Sbjct: 103 ALYAAITALVRNGDEVICFDPSYDSYAPAIAL----SGGIVKRMALQPPHFRVDWQEFAA 158
Query: 135 AIGPWTKLVWVESPTNP 151
+ T+LV + +P NP
Sbjct: 159 LLSERTRLVILNTPHNP 175
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 130 DEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDN 176
+++ AI P TKL+ +P+NP + ++R IA++A G +L D
Sbjct: 154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE 203
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 131 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 185
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 186 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 233
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 131 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 185
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 186 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 233
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,950,246
Number of Sequences: 62578
Number of extensions: 420196
Number of successful extensions: 1120
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 41
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)