BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016615
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 159/296 (53%), Gaps = 55/296 (18%)
Query: 100 QPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGK--FLLAARKCRRATCTDYIISL 153
+P P+ ++C I R++ ++ L L +DGK FLLA RK +++ ++Y+IS+
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 84 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ------- 132
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSI 270
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 133 ---ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP---------------- 170
Query: 271 PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 330
N E L+ + + L+NK P W++ Q + LNFHGRVT ASVKNFQ+
Sbjct: 171 ------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 224
Query: 331 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
+ G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 225 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 159/296 (53%), Gaps = 55/296 (18%)
Query: 100 QPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGK--FLLAARKCRRATCTDYIISL 153
+P P+ ++C I R++ ++ L L +DGK FLLA RK +++ ++Y+IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ------- 124
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSI 270
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 125 ---ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP---------------- 162
Query: 271 PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 330
N E L+ + + L+NK P W++ Q + LNFHGRVT ASVKNFQ+
Sbjct: 163 ------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 216
Query: 331 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
+ G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 217 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 55/296 (18%)
Query: 100 QPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGK--FLLAARKCRRATCTDYIISL 153
+P P+ ++C I R++ ++ L L +DGK FLLA RK +++ ++Y+IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ------- 124
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSI 270
+A + YE NVLG +GPR+M + +P + E + P
Sbjct: 125 ---ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP---------------- 162
Query: 271 PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 330
N E L+ + + L+NK P W++ + + LNFHGRVT ASVKNFQ+
Sbjct: 163 ------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQI 216
Query: 331 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
+ G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 217 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 156/294 (53%), Gaps = 51/294 (17%)
Query: 98 VKQPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGKFLLAARKCRRATCTDYIISL 153
V +P P+ ++C + R++ +Y L L + FLLA RK +R+ +Y+IS+
Sbjct: 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
++S+G ++GKLRSN LG +F V+D GQ P G ST +A+L+Q
Sbjct: 89 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 135
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 272
+A + YE NVLG RGPRRM + IP + E+ + P P
Sbjct: 136 ---ELAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP- 173
Query: 273 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 332
N S+ L + + L NK P W++ + LNF GRVT ASVKNFQ+V
Sbjct: 174 ----RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVH 229
Query: 333 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
+ + + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 230 ADD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 151/288 (52%), Gaps = 51/288 (17%)
Query: 98 VKQPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGKFLLAARKCRRATCTDYIISL 153
V +P P+ ++C + R++ +Y L L + FLLA RK +R+ +Y+IS+
Sbjct: 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
++S+G ++GKLRSN LG +F V+D GQ P G ST +A+L+Q
Sbjct: 65 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 111
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPF 272
+A + YE NVLG RGPRRM + IP + E+ + P P
Sbjct: 112 ---ELAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP- 149
Query: 273 FRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVA 332
N S+ L + + L NK P W++ + LNF GRVT ASVKNFQ+V
Sbjct: 150 ----RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVH 205
Query: 333 SPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 380
+ + + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 206 ADD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|B Chain B, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|C Chain C, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|D Chain D, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|E Chain E, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|F Chain F, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0W|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana
Length = 539
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 245 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 304
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 140 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 197
Query: 305 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG 351
+ L+C N H T++ + L + PA +++ LQFG
Sbjct: 198 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFG 241
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|B Chain B, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|C Chain C, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|D Chain D, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|E Chain E, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|F Chain F, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|H Chain H, The Structure Of Leishmania Pyruvate Kinase
pdb|1PKL|G Chain G, The Structure Of Leishmania Pyruvate Kinase
pdb|3KTX|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3KTX|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3HQN|D Chain D, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQN|A Chain A, Apo Crystal Structure Of Leishmania
Mexicana(Lmpyk)pyruvate Kinase
pdb|3HQO|K Chain K, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|A Chain A, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|B Chain B, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQO|C Chain C, Crystal Structures Of Leishmania Mexicana Pyruvate Kinase
(L Complex With Atp And Oxalate
pdb|3HQP|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQP|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk) In Complex With Atp, Oxalate And Fructose 2,6
Bisphosphate
pdb|3HQQ|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|E Chain E, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|F Chain F, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|G Chain G, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|H Chain H, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|I Chain I, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|J Chain J, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|K Chain K, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|L Chain L, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|M Chain M, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|N Chain N, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|O Chain O, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|P Chain P, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|Q Chain Q, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|R Chain R, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|S Chain S, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|T Chain T, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|U Chain U, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|V Chain V, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|W Chain W, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3HQQ|X Chain X, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lm Complex With Fructose 2,6 Bisphosphate
pdb|3IS4|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3IS4|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
(Lmpyk)in Complex With 1,3,6,8-Pyrenetetrasulfonic Acid
pdb|3QV6|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV6|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Acid Blue 80.
pdb|3QV7|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV7|C Chain C, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With Ponceau S And Acid Blue 25.
pdb|3QV8|D Chain D, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3QV8|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate
Kinase(Lmpyk)in Complex With
Benzothiazole-2,5-Disulfonic Acid.
pdb|3SRK|A Chain A, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
pdb|3SRK|B Chain B, A New Class Of Suicide Inhibitor Blocks Nucleotide Binding
To Pyruvate Kinase
Length = 499
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 245 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 304
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 100 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 157
Query: 305 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG 351
+ L+C N H T++ + L + PA +++ LQFG
Sbjct: 158 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFG 201
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis.
pdb|3PP7|B Chain B, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase
In Complex With The Drug Suramin, An Inhibitor Of
Glycolysis
Length = 498
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 245 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPR 304
+ +E G T+ F AD F+ N S+ G DG L+L+ ++
Sbjct: 99 AVMERGATCYVTTDPAF--ADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHE 156
Query: 305 WHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFG 351
+ L+C N H T++ + L + PA +++ LQFG
Sbjct: 157 DEQTLECTVTNSH---TISDRRGVNLPGCDVDLPAVSAKDRVDLQFG 200
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 121 CRKWRQLTKEIQLTPQIA 138
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 109 CRKWRQLTKEIQLTPQIA 126
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 101 CRKWRQLTKEIQLTPQIA 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,466,425
Number of Sequences: 62578
Number of extensions: 456370
Number of successful extensions: 821
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 18
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)