Query 016615
Match_columns 386
No_of_seqs 233 out of 362
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 3E-127 7E-132 939.3 26.3 308 35-386 43-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.5E-85 7.7E-90 624.6 17.0 240 101-380 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.3E-19 2.8E-24 185.4 4.3 78 294-381 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.3 8.3E-05 1.8E-09 75.2 20.8 72 294-381 273-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 5.3E-06 1.2E-10 59.7 0.3 36 37-80 1-36 (47)
6 PF00646 F-box: F-box domain; 97.5 1.4E-05 3E-10 57.2 -0.7 39 36-82 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 7.7E-05 1.7E-09 76.3 1.9 40 35-81 2-41 (373)
8 smart00256 FBOX A Receptor for 97.2 6.9E-05 1.5E-09 51.2 -0.1 34 40-81 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 89.4 0.16 3.5E-06 51.6 1.3 43 34-79 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 63.9 2.3 5E-05 43.7 0.0 68 36-111 97-167 (419)
11 PF04525 Tub_2: Tubby C 2; In 53.7 67 0.0015 29.3 7.8 78 106-183 62-144 (187)
12 KOG2477 Uncharacterized conser 22.3 39 0.00083 36.9 0.9 28 215-246 481-509 (628)
13 KOG4341 F-box protein containi 20.7 43 0.00093 35.9 0.8 56 35-99 70-125 (483)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=3.4e-127 Score=939.34 Aligned_cols=308 Identities=60% Similarity=0.990 Sum_probs=285.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceEEEEEEE
Q 016615 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR 114 (386)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~v~~p~~~gk~tFp~sLkqPgPr~~~iQC~I~R 114 (386)
+.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCceEEEEEeccC-----CCCcEEEEEeecccCCcceEEEEecCCCCCCCCCceeeeeeecceecEEEEecCCCCCCC
Q 016615 115 NRSTQTYHLYLSLTN-----DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG 189 (386)
Q Consensus 115 ~k~~~tY~LYL~l~~-----e~~kfLLaArK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNflGTkF~IYD~g~p~~~ 189 (386)
||+|++|+||+++.. |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~--- 199 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN--- 199 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence 999999999999865 668999999999999999999999999999999999999999999999999999732
Q ss_pred CccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016615 190 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS 269 (386)
Q Consensus 190 a~~~~~r~~~~~~~k~vsp~~p~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gG~~P~q~~~~~~~~~~~~~ 269 (386)
.+|.++ ++|++++|||+|+||+||||+||||||+|+||.||.++ ++|++|.|++..+.
T Consensus 200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~------- 257 (355)
T KOG2502|consen 200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHP------- 257 (355)
T ss_pred -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCccccccccccc-------
Confidence 123333 68899999999999999999999999999999999887 89999988765431
Q ss_pred ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEE
Q 016615 270 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 349 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQ 349 (386)
+.+.+.++..++++++|+||+|+|||++||||||||||||+||||||||||.. ++++||||
T Consensus 258 ------------~~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ 318 (355)
T KOG2502|consen 258 ------------SLLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ 318 (355)
T ss_pred ------------chhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence 11233334457899999999999999999999999999999999999999974 67999999
Q ss_pred eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016615 350 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386 (386)
Q Consensus 350 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACe 386 (386)
|||||+|+|||||+|||||||||||||||||+|||||
T Consensus 319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.5e-85 Score=624.58 Aligned_cols=240 Identities=58% Similarity=0.939 Sum_probs=182.9
Q ss_pred CCCCCceEEEEEEEeeeCce------EEEEEeccCCCCcEEEEEeecccCCcceEEEEecCCCCCCCCCceeeeeeecce
Q 016615 101 PGPRDYLLQCFIKRNRSTQT------YHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFL 174 (386)
Q Consensus 101 PgPr~~~iQC~I~R~k~~~t------Y~LYL~l~~e~~kfLLaArK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNfl 174 (386)
|||+|++|||+|+|||+|++ |+|||+ .++++|||||||+++++||||+|||+++|+||++++|||||||||+
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~--~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~ 78 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLE--GENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFL 78 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEE--STTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TT
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccc--cCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeeccccc
Confidence 89999999999999999864 555553 3688999999999999999999999999999999999999999999
Q ss_pred ecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEeeccCCcccccCCCCCC
Q 016615 175 GTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAP 254 (386)
Q Consensus 175 GTkF~IYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~p~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gG~~P 254 (386)
||+|+|||+|++++.+. ..+|..+..++|||+|+|++||||+||||||+|+||+|+.+..++++..|
T Consensus 79 GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~ 145 (246)
T PF01167_consen 79 GTEFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVP 145 (246)
T ss_dssp SSEEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B--
T ss_pred eeEEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeee
Confidence 99999999997655432 12566778899999999999999999999999999999887776666654
Q ss_pred ccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEecC
Q 016615 255 TQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 334 (386)
Q Consensus 255 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~ 334 (386)
.+..- ...+..+........+++++|+||+|+||++++||+|||+||||+|||||||||++
T Consensus 146 ~~p~~------------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~- 206 (246)
T PF01167_consen 146 FQPLN------------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHP- 206 (246)
T ss_dssp ---SS-------------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBT-
T ss_pred eeccc------------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEcc-
Confidence 33110 00111122222345679999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 016615 335 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 380 (386)
Q Consensus 335 ~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFD 380 (386)
.++++||||||||++|+|+|||+|||||+|||||||||||
T Consensus 207 ------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 207 ------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp ------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 3688999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.77 E-value=1.3e-19 Score=185.41 Aligned_cols=78 Identities=42% Similarity=0.731 Sum_probs=72.4
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016615 294 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 373 (386)
Q Consensus 294 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 373 (386)
++.++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+.|||||+|+.+.|++||+||+|+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 4569999999999999999999999999999999999763 578999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016615 374 ICLSSFDT 381 (386)
Q Consensus 374 I~LssFDt 381 (386)
+||++.--
T Consensus 555 valanvtq 562 (565)
T KOG2503|consen 555 VALANVTQ 562 (565)
T ss_pred HHHhhhhh
Confidence 99998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.33 E-value=8.3e-05 Score=75.24 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=53.9
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016615 294 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 373 (386)
Q Consensus 294 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 373 (386)
.+.||.|..- .+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+
T Consensus 273 ~L~VL~n~~~----------~~~~~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFS 336 (346)
T PF12043_consen 273 PLRVLSNQSQ----------NSKKSSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFS 336 (346)
T ss_pred CeEEeCCCCc----------cccccccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHH
Confidence 5677776522 122345556677778987652 234448999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016615 374 ICLSSFDT 381 (386)
Q Consensus 374 I~LssFDt 381 (386)
||++-.++
T Consensus 337 iciA~lh~ 344 (346)
T PF12043_consen 337 ICIAVLHS 344 (346)
T ss_pred Hhheeeec
Confidence 99987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.80 E-value=5.3e-06 Score=59.74 Aligned_cols=36 Identities=33% Similarity=0.728 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016615 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (386)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (386)
|..||+|+|.+|+..++.. ++..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999988442 68999999999999884
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.54 E-value=1.4e-05 Score=57.18 Aligned_cols=39 Identities=28% Similarity=0.589 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhh
Q 016615 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI 82 (386)
Q Consensus 36 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~ 82 (386)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 478999999999999996644 899999999999998764
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.36 E-value=7.7e-05 Score=76.29 Aligned_cols=40 Identities=33% Similarity=0.658 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016615 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (386)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (386)
..|+.||+|||+.|..|| |++-+++--++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 369999999999999999 9999999999999999998765
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.23 E-value=6.9e-05 Score=51.18 Aligned_cols=34 Identities=38% Similarity=0.813 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016615 40 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (386)
Q Consensus 40 ~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (386)
||+|++.+|+.++ +. ++..+|+.||+.||.++++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 44 7889999999999998754
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.42 E-value=0.16 Score=51.59 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCCCC---CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHh
Q 016615 34 TCCWAN---LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQIT 79 (386)
Q Consensus 34 ~~~w~~---~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 79 (386)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999995432 12356789999999876554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=2.3 Score=43.67 Aligned_cols=68 Identities=19% Similarity=0.481 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh--hhcCcccccccccccccccCCCCCc-eEEEE
Q 016615 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE--IVKVPELSGYLTFPISVKQPGPRDY-LLQCF 111 (386)
Q Consensus 36 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~--~v~~p~~~gk~tFp~sLkqPgPr~~-~iQC~ 111 (386)
.|..||.|+|.+|..-+ ..+....-|+||++|-.++.+ .-...+..|+---|.+|-|=..|+. .++|-
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 39999999999999644 678889999999999887754 2345677787778888877777774 46664
No 11
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=53.72 E-value=67 Score=29.34 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=31.6
Q ss_pred ceEEEEEEEeeeC--ceEEEEEeccCCCCcEEEEEeecc-cCCcceEEEEecCC-CCC-CCCCceeeeeeecceecEEEE
Q 016615 106 YLLQCFIKRNRST--QTYHLYLSLTNDDGKFLLAARKCR-RATCTDYIISLHSD-DMS-KGSSTYLGKLRSNFLGTKFIV 180 (386)
Q Consensus 106 ~~iQC~I~R~k~~--~tY~LYL~l~~e~~kfLLaArK~r-r~~tSnYiISld~~-dlS-r~s~~yvGKLRSNflGTkF~I 180 (386)
|..-..|+|..-+ .+|..|.+-..++.+.+...||.. -...++..+.+.+. ..+ -++...-=+|+.||++-.|+|
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I 141 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTI 141 (187)
T ss_dssp S-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EE
T ss_pred CCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEE
Confidence 4455677764333 489999863333345777777752 12233333444322 110 112223346899999999999
Q ss_pred ecC
Q 016615 181 YDG 183 (386)
Q Consensus 181 YD~ 183 (386)
||.
T Consensus 142 ~~~ 144 (187)
T PF04525_consen 142 YDS 144 (187)
T ss_dssp EEC
T ss_pred EEc
Confidence 974
No 12
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=39 Score=36.87 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred eeEEEEEEecccCCCCCC-ceeEEeeccCCccc
Q 016615 215 YSVAHISYELNVLGSRGP-RRMQCVMDSIPASA 246 (386)
Q Consensus 215 ~ela~V~Ye~NvLg~rGP-RrM~~~m~~Ip~s~ 246 (386)
..+.+|.||.- .++ |+|+|.|.+||+..
T Consensus 481 ~n~dviFyE~a----~~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 481 MNLDVIFYENA----PSLQRRPHTAIECIPVPQ 509 (628)
T ss_pred cCCCeEEEecc----CccccCCceeEEEeechH
Confidence 35778999963 344 89999999999854
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.75 E-value=43 Score=35.86 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccc
Q 016615 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVK 99 (386)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~v~~p~~~gk~tFp~sLk 99 (386)
+-=-.|||||+.-|..-|+- +...-||.+|+.|-..+.+.+.= ..-+-.||+..+.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDt--------ksl~r~a~~c~~~n~~AlD~~~~-q~idL~t~~rDv~ 125 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDT--------KSLCRAAQCCTMWNKLALDGSCW-QHIDLFTFQRDVD 125 (483)
T ss_pred cccccCCHHHHHHHHHHHhH--------HHHHHHHHHHHHhhhhhhccccc-eeeehhcchhcCC
Confidence 33336999999999998843 46677999999999888764321 1122246766554
Done!