Query 016616
Match_columns 386
No_of_seqs 431 out of 2686
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk6_A NADH pyrophosphatase; 1 100.0 2.6E-37 8.8E-42 297.6 19.8 191 59-290 17-207 (269)
2 3cng_A Nudix hydrolase; struct 99.9 2.4E-21 8.2E-26 175.2 13.6 122 185-310 2-154 (189)
3 3gz5_A MUTT/nudix family prote 99.8 9.9E-19 3.4E-23 164.9 11.6 142 212-369 13-192 (240)
4 2fb1_A Conserved hypothetical 99.8 7.5E-19 2.6E-23 164.2 10.1 139 214-369 6-179 (226)
5 2qjt_B Nicotinamide-nucleotide 99.8 4.3E-19 1.5E-23 174.1 6.8 122 147-279 141-265 (352)
6 2fml_A MUTT/nudix family prote 99.7 3E-17 1E-21 157.5 10.5 138 212-365 30-229 (273)
7 2qjo_A Bifunctional NMN adenyl 99.7 3.8E-17 1.3E-21 159.1 9.5 97 174-279 163-260 (341)
8 3i7u_A AP4A hydrolase; nudix p 99.7 5.4E-16 1.9E-20 132.9 13.2 85 223-312 6-121 (134)
9 3u53_A BIS(5'-nucleosyl)-tetra 99.6 1E-15 3.5E-20 133.3 8.4 97 211-312 5-134 (155)
10 2fvv_A Diphosphoinositol polyp 99.6 5.2E-15 1.8E-19 134.9 11.6 76 230-306 50-153 (194)
11 2yyh_A MUTT domain, 8-OXO-DGTP 99.6 3.9E-15 1.4E-19 126.5 10.1 97 214-312 3-131 (139)
12 2w4e_A MUTT/nudix family prote 99.6 6.3E-15 2.1E-19 127.0 10.8 83 222-305 6-119 (145)
13 3i9x_A MUTT/nudix family prote 99.6 9E-15 3.1E-19 131.4 11.9 99 215-313 20-166 (187)
14 2pbt_A AP4A hydrolase; nudix p 99.6 2.7E-14 9.2E-19 119.8 13.1 84 223-311 6-120 (134)
15 3gg6_A Nudix motif 18, nucleos 99.6 1.5E-14 5E-19 125.3 10.7 88 223-311 22-138 (156)
16 3id9_A MUTT/nudix family prote 99.5 1.6E-14 5.4E-19 127.1 10.1 66 217-285 19-84 (171)
17 3h95_A Nucleoside diphosphate- 99.5 2.7E-14 9.2E-19 129.8 11.4 90 215-304 20-141 (199)
18 1vcd_A NDX1; nudix protein, di 99.5 4.6E-14 1.6E-18 117.3 11.7 85 223-311 4-115 (126)
19 2b0v_A Nudix hydrolase; struct 99.5 5E-14 1.7E-18 120.9 12.0 60 223-284 10-70 (153)
20 3gwy_A Putative CTP pyrophosph 99.5 4.6E-14 1.6E-18 120.2 11.0 80 222-303 7-116 (140)
21 3shd_A Phosphatase NUDJ; nudix 99.5 2.5E-14 8.6E-19 123.2 9.2 62 223-286 7-68 (153)
22 1g0s_A Hypothetical 23.7 kDa p 99.5 4.4E-14 1.5E-18 129.9 11.1 97 212-309 49-185 (209)
23 2yvp_A NDX2, MUTT/nudix family 99.5 2.5E-14 8.5E-19 127.5 9.1 90 216-306 36-157 (182)
24 3q1p_A Phosphohydrolase (MUTT/ 99.5 2E-14 7E-19 131.6 8.7 89 212-304 59-179 (205)
25 4dyw_A MUTT/nudix family prote 99.5 2.8E-14 9.5E-19 124.5 8.9 89 215-305 23-143 (157)
26 1v8y_A ADP-ribose pyrophosphat 99.5 4.9E-14 1.7E-18 124.4 10.4 88 215-305 28-146 (170)
27 2azw_A MUTT/nudix family prote 99.5 5.8E-14 2E-18 119.7 10.0 89 219-310 16-137 (148)
28 3o6z_A GDP-mannose pyrophospha 99.5 9E-14 3.1E-18 125.9 11.4 94 214-309 39-172 (191)
29 1ktg_A Diadenosine tetraphosph 99.5 1.4E-13 4.9E-18 116.1 11.5 88 223-311 5-126 (138)
30 3fcm_A Hydrolase, nudix family 99.5 2.2E-13 7.4E-18 123.5 13.5 88 223-312 47-176 (197)
31 3o8s_A Nudix hydrolase, ADP-ri 99.5 3.7E-14 1.3E-18 129.9 7.9 88 212-304 61-180 (206)
32 1vhz_A ADP compounds hydrolase 99.5 8E-14 2.7E-18 127.2 9.7 85 223-309 51-166 (198)
33 3q93_A 7,8-dihydro-8-oxoguanin 99.5 7E-14 2.4E-18 124.8 8.5 72 232-303 34-134 (176)
34 3grn_A MUTT related protein; s 99.5 6.8E-14 2.3E-18 120.9 7.9 80 223-303 10-119 (153)
35 2o1c_A DATP pyrophosphohydrola 99.5 4.8E-13 1.6E-17 113.8 12.9 62 217-280 6-67 (150)
36 3son_A Hypothetical nudix hydr 99.5 3.5E-13 1.2E-17 115.7 12.1 48 231-280 17-64 (149)
37 3exq_A Nudix family hydrolase; 99.5 4.8E-14 1.6E-18 123.5 6.7 83 221-303 10-121 (161)
38 3eds_A MUTT/nudix family prote 99.5 4.9E-14 1.7E-18 122.3 6.5 62 221-286 21-82 (153)
39 3f13_A Putative nudix hydrolas 99.5 1.2E-13 4E-18 122.5 8.2 86 223-312 17-124 (163)
40 1sjy_A MUTT/nudix family prote 99.4 2.7E-13 9.2E-18 117.1 10.0 87 218-305 10-132 (159)
41 2jvb_A Protein PSU1, mRNA-deca 99.4 6.7E-14 2.3E-18 119.6 5.9 57 221-279 4-60 (146)
42 1k2e_A Nudix homolog; nudix/MU 99.4 3.1E-13 1.1E-17 117.5 9.6 54 223-280 3-56 (156)
43 1f3y_A Diadenosine 5',5'''-P1, 99.4 7.6E-13 2.6E-17 114.5 11.5 57 221-279 14-70 (165)
44 3q91_A Uridine diphosphate glu 99.4 2.5E-13 8.4E-18 126.6 8.9 84 222-305 37-190 (218)
45 3oga_A Nucleoside triphosphata 99.4 5.2E-13 1.8E-17 116.7 10.3 57 224-281 30-89 (165)
46 2rrk_A ORF135, CTP pyrophospho 99.4 1.2E-12 4E-17 110.5 11.3 71 233-303 19-117 (140)
47 3f6a_A Hydrolase, nudix family 99.4 2.3E-13 7.9E-18 118.4 7.0 53 223-279 8-60 (159)
48 2fkb_A Putative nudix hydrolas 99.4 4.5E-13 1.5E-17 118.7 9.0 81 223-304 39-150 (180)
49 3ees_A Probable pyrophosphohyd 99.4 4.4E-13 1.5E-17 114.6 8.6 77 226-303 26-130 (153)
50 3fk9_A Mutator MUTT protein; s 99.4 5.7E-13 1.9E-17 120.4 9.6 57 223-283 6-62 (188)
51 1mk1_A ADPR pyrophosphatase; n 99.4 5E-13 1.7E-17 122.4 9.4 86 222-308 44-163 (207)
52 3r03_A Nudix hydrolase; struct 99.4 3.4E-13 1.2E-17 114.5 7.4 58 222-280 9-68 (144)
53 1q27_A Putative nudix hydrolas 99.4 9.6E-13 3.3E-17 115.6 10.3 83 221-304 34-149 (171)
54 1hzt_A Isopentenyl diphosphate 99.4 7.7E-13 2.6E-17 118.9 8.7 82 223-305 34-152 (190)
55 2pqv_A MUTT/nudix family prote 99.4 1E-12 3.5E-17 113.4 8.3 52 223-280 21-72 (154)
56 3hhj_A Mutator MUTT protein; n 99.4 8.2E-13 2.8E-17 114.6 7.6 57 223-280 31-89 (158)
57 1nqz_A COA pyrophosphatase (MU 99.4 8.3E-13 2.8E-17 118.9 7.6 63 222-285 35-102 (194)
58 2a6t_A SPAC19A8.12; alpha/beta 99.4 3.3E-13 1.1E-17 129.4 5.2 63 216-279 96-158 (271)
59 2b06_A MUTT/nudix family prote 99.4 7.7E-13 2.6E-17 114.1 6.8 85 218-303 5-119 (155)
60 1rya_A GDP-mannose mannosyl hy 99.3 2.9E-12 9.9E-17 110.7 10.1 56 222-278 19-75 (160)
61 2dsc_A ADP-sugar pyrophosphata 99.3 2.8E-12 9.6E-17 117.8 9.8 61 220-280 61-125 (212)
62 3e57_A Uncharacterized protein 99.3 2.3E-12 7.7E-17 119.7 8.5 71 233-303 78-188 (211)
63 1mut_A MUTT, nucleoside tripho 99.3 3.7E-13 1.3E-17 111.8 2.6 56 227-283 10-67 (129)
64 2kdv_A RNA pyrophosphohydrolas 99.3 7.3E-12 2.5E-16 110.4 9.2 63 221-286 8-70 (164)
65 1x51_A A/G-specific adenine DN 99.2 1.4E-11 4.7E-16 106.6 7.8 56 224-279 22-83 (155)
66 3fjy_A Probable MUTT1 protein; 99.2 9.9E-11 3.4E-15 115.9 13.2 48 232-281 36-83 (364)
67 2dho_A Isopentenyl-diphosphate 99.1 1.8E-10 6.1E-15 108.2 9.8 56 223-279 61-129 (235)
68 2pny_A Isopentenyl-diphosphate 99.1 1.8E-10 6.2E-15 109.0 8.6 57 222-279 71-140 (246)
69 1q33_A Pyrophosphatase, ADP-ri 99.0 6.6E-10 2.2E-14 107.6 9.4 41 235-277 140-180 (292)
70 1u20_A U8 snoRNA-binding prote 99.0 1.3E-10 4.4E-15 107.1 4.1 64 212-280 36-100 (212)
71 2xsq_A U8 snoRNA-decapping enz 98.9 3.7E-10 1.3E-14 104.8 4.0 61 212-279 45-108 (217)
72 3fsp_A A/G-specific adenine gl 98.9 5.2E-10 1.8E-14 111.5 5.0 77 224-302 243-344 (369)
73 3dup_A MUTT/nudix family prote 98.9 8.5E-09 2.9E-13 100.4 10.8 61 218-278 115-181 (300)
74 3qsj_A Nudix hydrolase; struct 98.7 9.3E-09 3.2E-13 96.6 4.9 57 223-279 11-92 (232)
75 3rh7_A Hypothetical oxidoreduc 98.5 1E-07 3.4E-12 93.6 7.6 63 233-302 193-275 (321)
76 3kvh_A Protein syndesmos; NUDT 98.5 2.4E-08 8.4E-13 91.2 2.0 52 234-288 44-97 (214)
77 3bho_A Cleavage and polyadenyl 98.3 8.4E-07 2.9E-11 81.6 7.6 40 234-276 73-112 (208)
78 3j20_Y 30S ribosomal protein S 96.7 0.00069 2.4E-08 48.6 2.3 33 184-218 17-49 (50)
79 2k4x_A 30S ribosomal protein S 93.2 0.037 1.3E-06 40.3 2.0 34 184-219 16-49 (55)
80 3h0g_I DNA-directed RNA polyme 85.4 0.51 1.7E-05 39.0 3.1 33 185-219 3-39 (113)
81 4esj_A Type-2 restriction enzy 77.4 1 3.6E-05 42.0 2.3 38 176-215 23-65 (257)
82 3qt1_I DNA-directed RNA polyme 74.9 1.6 5.4E-05 37.2 2.6 39 172-216 14-56 (133)
83 1pft_A TFIIB, PFTFIIBN; N-term 68.3 3.6 0.00012 28.5 2.8 31 186-218 5-36 (50)
84 1twf_I B12.6, DNA-directed RNA 66.4 2.9 0.0001 34.8 2.4 31 185-217 3-37 (122)
85 2hf1_A Tetraacyldisaccharide-1 63.5 3.6 0.00012 30.9 2.2 40 183-225 5-44 (68)
86 2jr6_A UPF0434 protein NMA0874 62.8 3.8 0.00013 30.8 2.2 42 182-226 4-45 (68)
87 2js4_A UPF0434 protein BB2007; 62.2 3.7 0.00013 31.0 2.0 42 182-226 4-45 (70)
88 2con_A RUH-035 protein, NIN on 61.5 2.7 9.2E-05 32.7 1.2 13 186-198 30-42 (79)
89 2pk7_A Uncharacterized protein 59.1 6.6 0.00022 29.6 2.9 42 182-226 4-45 (69)
90 3m7n_A Putative uncharacterize 58.2 6.3 0.00021 34.8 3.2 33 185-221 139-171 (179)
91 2xzm_9 RPS31E; ribosome, trans 57.8 4.1 0.00014 36.7 1.8 32 184-217 111-142 (189)
92 2kpi_A Uncharacterized protein 56.7 6 0.0002 28.5 2.2 40 181-223 5-44 (56)
93 1twf_L ABC10-alpha, DNA-direct 56.3 5.9 0.0002 30.0 2.2 32 185-219 27-59 (70)
94 2jrp_A Putative cytoplasmic pr 55.0 3.7 0.00013 32.0 1.0 11 188-198 33-43 (81)
95 1vq8_Z 50S ribosomal protein L 54.0 6.8 0.00023 30.6 2.3 29 185-215 26-54 (83)
96 3sgi_A DNA ligase; HET: DNA AM 51.9 3 0.0001 44.0 0.0 33 186-218 415-449 (615)
97 2fiy_A Protein FDHE homolog; F 51.0 7.6 0.00026 37.5 2.6 35 185-221 181-224 (309)
98 1dl6_A Transcription factor II 50.8 9.2 0.00031 27.6 2.5 32 183-216 8-40 (58)
99 2jny_A Uncharacterized BCR; st 50.7 6.8 0.00023 29.3 1.8 43 181-226 5-47 (67)
100 1vdd_A Recombination protein R 50.5 2 6.9E-05 39.7 -1.4 90 172-274 40-131 (228)
101 4glx_A DNA ligase; inhibitor, 48.0 6.8 0.00023 41.1 1.9 29 186-214 405-434 (586)
102 3vdp_A Recombination protein R 47.8 1.7 5.8E-05 39.8 -2.4 90 172-274 54-145 (212)
103 2owo_A DNA ligase; protein-DNA 47.4 7.1 0.00024 41.6 1.9 29 186-214 405-434 (671)
104 1gh9_A 8.3 kDa protein (gene M 47.3 7.7 0.00026 29.4 1.6 25 188-216 6-30 (71)
105 1dgs_A DNA ligase; AMP complex 45.3 6.8 0.00023 41.7 1.4 27 186-214 403-429 (667)
106 3u5c_f 40S ribosomal protein S 44.5 10 0.00035 32.6 2.2 33 183-217 115-149 (152)
107 2apo_B Ribosome biogenesis pro 43.9 11 0.00036 27.8 1.8 23 185-215 5-27 (60)
108 2zkr_2 60S ribosomal protein L 43.0 8.7 0.0003 30.9 1.3 27 184-215 14-40 (97)
109 2ct7_A Ring finger protein 31; 38.8 14 0.00048 28.5 1.9 30 184-215 23-52 (86)
110 3h0g_L DNA-directed RNA polyme 37.4 20 0.00067 26.6 2.5 29 185-216 20-48 (63)
111 2a20_A Regulating synaptic mem 36.1 6.2 0.00021 29.0 -0.5 24 185-208 32-55 (62)
112 3cc2_Z 50S ribosomal protein L 34.1 21 0.00071 29.6 2.3 31 183-215 57-87 (116)
113 1ee8_A MUTM (FPG) protein; bet 33.0 20 0.00069 33.5 2.4 26 187-214 236-263 (266)
114 1k3x_A Endonuclease VIII; hydr 30.9 19 0.00066 33.5 1.9 29 183-213 231-261 (262)
115 2akl_A PHNA-like protein PA012 30.8 23 0.00079 30.0 2.1 31 186-219 27-57 (138)
116 2aus_D NOP10, ribosome biogene 30.8 22 0.00075 26.1 1.7 24 184-215 3-26 (60)
117 2xzf_A Formamidopyrimidine-DNA 29.7 21 0.00072 33.4 1.9 26 187-214 243-270 (271)
118 1k82_A Formamidopyrimidine-DNA 29.5 21 0.00072 33.4 1.9 25 187-213 241-267 (268)
119 3u6p_A Formamidopyrimidine-DNA 29.4 21 0.00072 33.6 1.8 27 185-213 244-272 (273)
120 2l8e_A Polyhomeotic-like prote 28.5 7.2 0.00025 27.5 -1.2 29 185-214 17-46 (49)
121 1ffk_W Ribosomal protein L37AE 27.6 60 0.002 24.6 3.8 31 183-215 24-54 (73)
122 3jyw_9 60S ribosomal protein L 27.4 41 0.0014 25.5 2.8 29 185-215 25-53 (72)
123 3iz5_m 60S ribosomal protein L 26.0 30 0.001 27.5 1.9 27 187-215 37-63 (92)
124 4ayb_P DNA-directed RNA polyme 26.0 41 0.0014 23.5 2.3 33 188-222 5-39 (48)
125 1wd2_A Ariadne-1 protein homol 25.8 31 0.0011 24.9 1.8 31 184-214 4-34 (60)
126 1x4j_A Ring finger protein 38; 24.2 37 0.0013 24.6 2.0 21 179-199 53-73 (75)
127 3fac_A Putative uncharacterize 24.1 17 0.00057 29.4 0.1 15 185-199 66-80 (118)
128 2bay_A PRE-mRNA splicing facto 23.1 35 0.0012 24.4 1.6 23 177-199 29-51 (61)
129 1vq8_1 50S ribosomal protein L 23.1 28 0.00096 25.2 1.1 26 184-214 15-40 (57)
130 3j21_i 50S ribosomal protein L 23.0 41 0.0014 26.2 2.1 29 185-215 34-62 (83)
131 3izc_m 60S ribosomal protein R 22.8 41 0.0014 26.7 2.1 29 185-215 35-63 (92)
132 4a17_Y RPL37A, 60S ribosomal p 21.5 30 0.001 28.1 1.1 29 185-215 35-63 (103)
133 3k1f_M Transcription initiatio 21.3 39 0.0013 30.2 1.9 31 184-216 19-52 (197)
134 1k81_A EIF-2-beta, probable tr 21.2 40 0.0014 21.9 1.5 27 188-216 2-31 (36)
135 2k5c_A Uncharacterized protein 21.1 21 0.00073 27.8 0.1 38 183-222 5-67 (95)
136 2jne_A Hypothetical protein YF 20.6 32 0.0011 27.7 1.0 13 187-199 33-45 (101)
No 1
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=100.00 E-value=2.6e-37 Score=297.61 Aligned_cols=191 Identities=26% Similarity=0.490 Sum_probs=159.1
Q ss_pred CCCCCCcEEEEEeCCceeeecCCCCCCCcceeccccchhhHHHhhhcCcCcccccEEEeeeecCCCceEEEEecCCCCCc
Q 016616 59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL 138 (386)
Q Consensus 59 ~~~~p~t~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vfLG~~~~~~~~~fa~~~~~~~~~ 138 (386)
.++...+++++|.++++|+.. ++ +.+....++.. .....+|||.. ++.+||+++++ .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~--~-- 73 (269)
T 1vk6_A 17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ--R-- 73 (269)
T ss_dssp CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC--C--
T ss_pred cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC--C--
Confidence 456777999999999999954 21 12222222211 22467899985 67899999875 1
Q ss_pred cccccccccchhhhHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecC
Q 016616 139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (386)
Q Consensus 139 ~~~~~~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (386)
+..+.++|.++.. +..+++++++|++|++|+++++||+.||+++....+++++.|+ +|+..+||
T Consensus 74 -------~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp 137 (269)
T 1vk6_A 74 -------RHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP 137 (269)
T ss_dssp -------SSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred -------CccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence 3456789988743 2357789999999999999999999999999999999999997 69999999
Q ss_pred CCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (386)
Q Consensus 219 r~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p 290 (386)
++.|+|+++|.+ +++|||+|+.+++.|+|++|||+||+|||+++||+||++||||+++..++|+++++|+
T Consensus 138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~ 207 (269)
T 1vk6_A 138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP 207 (269)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecC
Confidence 999999988876 6899999998777899999999999999999999999999999999999999999876
No 2
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.86 E-value=2.4e-21 Score=175.21 Aligned_cols=122 Identities=23% Similarity=0.382 Sum_probs=97.0
Q ss_pred hcCccccCCCCceecc----CCccccccCCCCCceecCCCCcEEEEEEEeCCCCEEEEEEeccCC-CCceEeeeeecCCC
Q 016616 185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPG 259 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~-~g~wslPgG~Ve~G 259 (386)
+++|||.||+++.... .+.+..|. .|+..+|+++.++|.+++++ +++|||+++.+.+ .|.|.+|||+||+|
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~g 77 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICP--KCHTIHYQNPKVIVGCIPEW--ENKVLLCKRAIAPYRGKWTLPAGFMENN 77 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEET--TTTEEECCCCEEEEEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTT
T ss_pred CcccCchhCCccccccccCCCCcceECC--CCCCccCCCCceEEEEEEEe--CCEEEEEEccCCCCCCeEECceeeccCC
Confidence 5799999999997642 34577897 79999999998888887777 6799999988543 68999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeccEEEEeeeeCC-------------------------CeeEeeHHHHH-HHhhhhhHH
Q 016616 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------------------------DARWHSREDVK-KALTFAEYI 310 (386)
Q Consensus 260 EtleeAa~REv~EEtGl~v~~v~~~~s~p~p-------------------------~a~W~~~eel~-~~L~~d~~~ 310 (386)
||+++||+||++||||+++....+++.+.++ +++|++.+++. ..+.+++..
T Consensus 78 Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~ 154 (189)
T 3cng_A 78 ETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIH 154 (189)
T ss_dssp CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCccccceeEEEEecCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHH
Confidence 9999999999999999987654444333222 77999999997 346665543
No 3
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.77 E-value=9.9e-19 Score=164.88 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=106.6
Q ss_pred CCceecCCCCcEEEEEEE--eCCCCEEEEEEecc-CCCCceEeeeeecCC--CCCHHHHHHHHHHHHhCCeeccEEEEee
Q 016616 212 CKKRIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEP--GESLEEAVRRETWEETGIEVGEVVYHTS 286 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~--~~~~~~vLL~rr~~-~~~g~wslPgG~Ve~--GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (386)
|....|+++..+|.++|+ +.++++|||++|.. +..|.|++|||+|++ |||+++||+||++||||+++..+.+++.
T Consensus 13 ~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~ 92 (240)
T 3gz5_A 13 YDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT 92 (240)
T ss_dssp --------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred cCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence 445567776666666555 43356999999875 346899999999999 9999999999999999999888877766
Q ss_pred eeCC------------------------------CeeEeeHHHHHH-HhhhhhHHHHHHHHHHHHHHHhhhhhhcccccc
Q 016616 287 QPWP------------------------------DARWHSREDVKK-ALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAA 335 (386)
Q Consensus 287 ~p~p------------------------------~a~W~~~eel~~-~L~~d~~~~~~~~~~~~~~~i~~~~er~~~~~~ 335 (386)
+..+ +++|++.++++. .|.++|..++.. ++++++.
T Consensus 93 ~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~-----------a~~rlr~--- 158 (240)
T 3gz5_A 93 VGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ-----------ARERLTQ--- 158 (240)
T ss_dssp EEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH-----------HHHHHHH---
T ss_pred eCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHH-----------HHHHHHH---
Confidence 5442 789999999974 488888766543 4455554
Q ss_pred ccccccCCCCCccCCchhhHHH--HHHHHHHcccCC
Q 016616 336 DFNVESGELAPIFIPGPFAIAH--HLISSWVYKDAP 369 (386)
Q Consensus 336 ~~~~~~~~~~~~~lP~~~aIA~--~Li~~w~~~~~~ 369 (386)
++.+.+++..++|+.||+.+ ++++..++...+
T Consensus 159 --kl~y~~i~~~llp~~Ftl~~l~~~ye~i~g~~~~ 192 (240)
T 3gz5_A 159 --KALYSLVPGFALSEPFTLPELQHVHEVLLGKPIQ 192 (240)
T ss_dssp --HHHHCSGGGGGSCSSBCHHHHHHHHHHHHTSCCC
T ss_pred --hcccCcHHHHhCCCCccHHHHHHHHHHHcCCcCC
Confidence 56678888999999999966 899999987765
No 4
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.77 E-value=7.5e-19 Score=164.17 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=107.7
Q ss_pred ceecCCCCcEEEEEEEe--CCCCEEEEEEecc-CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616 214 KRIYPRVDPVVIMLVID--RENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (386)
Q Consensus 214 ~~~ypr~~p~Vivlv~~--~~~~~vLL~rr~~-~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p 290 (386)
...|+++..+|.++|+. .++++|||++|.. +..|.|++|||+||+|||+++||+||++||||+++..+.+++++.++
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~ 85 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI 85 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence 44577777777776662 3467999999875 44689999999999999999999999999999998877776655322
Q ss_pred ------------------------------CeeEeeHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhccccccccccc
Q 016616 291 ------------------------------DARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVE 340 (386)
Q Consensus 291 ------------------------------~a~W~~~eel~~~L~~d~~~~~~~~~~~~~~~i~~~~er~~~~~~~~~~~ 340 (386)
+++|++.+++++ +.++|..++.. ++++++. ++.
T Consensus 86 ~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~-l~~dh~~il~~-----------a~~rlr~-----~~~ 148 (226)
T 2fb1_A 86 DRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPA-LIFDHPEMVDK-----------AREMMKQ-----KAS 148 (226)
T ss_dssp TSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC-BSTTHHHHHHH-----------HHHHHHH-----HHH
T ss_pred CcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh-ccCCHHHHHHH-----------HHHHHHh-----hcc
Confidence 789999999986 77887655543 3344443 455
Q ss_pred cCCCCCccCCchhhHHH--HHHHHHHcccCC
Q 016616 341 SGELAPIFIPGPFAIAH--HLISSWVYKDAP 369 (386)
Q Consensus 341 ~~~~~~~~lP~~~aIA~--~Li~~w~~~~~~ 369 (386)
+.+++..++|+.||+.. ++++..++...+
T Consensus 149 y~~i~~~llp~~ftl~~l~~~ye~~~~~~~~ 179 (226)
T 2fb1_A 149 VEPIGFNLLPKLFTLSQLQSLYEAIYGEPMD 179 (226)
T ss_dssp HSGGGGGGSCSEEEHHHHHHHHHHHHTSCCC
T ss_pred cCchHHHhCCccccHHHHHHHHHHHhCCCCC
Confidence 67778889999999955 899999887765
No 5
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.76 E-value=4.3e-19 Score=174.13 Aligned_cols=122 Identities=22% Similarity=0.261 Sum_probs=94.1
Q ss_pred cchhhhHHHhhh-cchhhhhhhHHHHHH-HHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEE
Q 016616 147 LCFVELRTVMVA-TDWADQRAMADLAIA-GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVV 224 (386)
Q Consensus 147 ~~~~~lR~~~~~-~~~~~~~~~~~~~~~-~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~V 224 (386)
.....+|+.+.. .+..+. ...+... +.+..|.+|+++++||+.||.++.... .+. .|+...||++.++|
T Consensus 141 iSST~IR~~~~~~g~~~~~--i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~~--~~~-----~~~~~~~~~~~~~v 211 (352)
T 2qjt_B 141 FNATEFRQKFYNGIISKQY--MCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIE--YKR-----LWLKAPFKPNFVTV 211 (352)
T ss_dssp CCHHHHHHHHHTTCCCGGG--CSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHHH--HHH-----HHSSSSSCCEEEEE
T ss_pred CCchHHHHHHhccCcccch--hhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHHH--HHH-----HhcccCCCCCceEE
Confidence 455789988653 311110 0112344 679999999999999999999984322 222 37888999999999
Q ss_pred EEEEEeCCCCEEEEEEeccCC-CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 225 IMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 225 ivlv~~~~~~~vLL~rr~~~~-~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
.++|++ +++|||+|+.+.+ .|.|++|||+||+|||+++||+||++||||+++.
T Consensus 212 ~~vv~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~ 265 (352)
T 2qjt_B 212 DALVIV--NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLT 265 (352)
T ss_dssp EEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCC
T ss_pred EEEEEE--CCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcc
Confidence 888885 6899999987543 5899999999999999999999999999999865
No 6
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.70 E-value=3e-17 Score=157.51 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=102.5
Q ss_pred CCceecCCCCcEEEEEEEeCC----CCEEEEEEecc-CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 016616 212 CKKRIYPRVDPVVIMLVIDRE----NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH 284 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~~~~----~~~vLL~rr~~-~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v--~~v~~~ 284 (386)
|....|+++..+|.++|+..+ ..+|||++|.. +..|.|++|||+|++|||+++||+||++||||+++ ..+.++
T Consensus 30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l 109 (273)
T 2fml_A 30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL 109 (273)
T ss_dssp SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence 444567777767666665422 34899998875 34689999999999999999999999999999653 345544
Q ss_pred eeeeCC-----------------------------CeeEeeHHHHHH------------------------HhhhhhHHH
Q 016616 285 TSQPWP-----------------------------DARWHSREDVKK------------------------ALTFAEYIK 311 (386)
Q Consensus 285 ~s~p~p-----------------------------~a~W~~~eel~~------------------------~L~~d~~~~ 311 (386)
+++..+ +++|++.+++.+ .|.+||..+
T Consensus 110 ~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~I 189 (273)
T 2fml_A 110 HSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEI 189 (273)
T ss_dssp EEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHH
T ss_pred EEEcCCCCCCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHHH
Confidence 433211 679999997533 356677655
Q ss_pred HHHHHHHHHHHHhhhhhhccccccccccccCCCCCccCCchhhHHH--HHHHHHHc
Q 016616 312 AQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAH--HLISSWVY 365 (386)
Q Consensus 312 ~~~~~~~~~~~i~~~~er~~~~~~~~~~~~~~~~~~~lP~~~aIA~--~Li~~w~~ 365 (386)
+ ..++++++. |+.|.++++.++|+.||+.+ ++++..++
T Consensus 190 l-----------~~al~rlr~-----kl~y~~i~~~llp~~FTl~~l~~~ye~i~g 229 (273)
T 2fml_A 190 I-----------IKAFNRVVD-----KMEHEPQVLQVLGKDFTITEARKVFAKFLG 229 (273)
T ss_dssp H-----------HHHHHHHHH-----HTTTCCGGGGGGCSCBCHHHHHHHHHHHHT
T ss_pred H-----------HHHHHHHHH-----HhcCCcHHHHhCCccccHHHHHHHHHHHhC
Confidence 4 346666665 77888888999999999965 89999998
No 7
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.69 E-value=3.8e-17 Score=159.14 Aligned_cols=97 Identities=23% Similarity=0.279 Sum_probs=81.1
Q ss_pred HHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEEEEEeCCCCEEEEEEeccCC-CCceEee
Q 016616 174 GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-PRMWSCI 252 (386)
Q Consensus 174 ~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~-~g~wslP 252 (386)
+.+..|..|+.+++||..|+.+.... .|.. .|+...||++.++|.++|++ +++|||+++...+ .|.|++|
T Consensus 163 ~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~g~w~lP 233 (341)
T 2qjo_A 163 AIADYLQTFQKSERYIALCDEYQFLQ------AYKQ-AWATAPYAPTFITTDAVVVQ--AGHVLMVRRQAKPGLGLIALP 233 (341)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH-TTTTSSSCCCEEEEEEEEEE--TTEEEEEECCSSSSTTCEECS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH------HHHh-hhhccCCCCCceEEEEEEEe--CCEEEEEEecCCCCCCeEECC
Confidence 45788999999999999998876322 1221 27788899999888888886 6899999987543 6899999
Q ss_pred eeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 253 AGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 253 gG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
||+||+|||+++||+||++||||+++.
T Consensus 234 gG~ve~gE~~~~aa~REl~EEtGl~~~ 260 (341)
T 2qjo_A 234 GGFIKQNETLVEGMLRELKEETRLKVP 260 (341)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCCSSC
T ss_pred CCcCCCCCCHHHHHHHHHhhhhCCccc
Confidence 999999999999999999999999865
No 8
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.67 E-value=5.4e-16 Score=132.92 Aligned_cols=85 Identities=32% Similarity=0.495 Sum_probs=65.8
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeee--------------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP-------------- 288 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p-------------- 288 (386)
++.++|++ +++|||+|+. .|.|++|||+||+|||+++||+||++||||+++..+.+++...
T Consensus 6 aag~vv~~--~~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (134)
T 3i7u_A 6 SAGGVLFK--DGEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEE--TTEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEE
Confidence 34445555 5899999875 4889999999999999999999999999999876554443211
Q ss_pred ------------CC-----CeeEeeHHHHHHHhhhhhHHHH
Q 016616 289 ------------WP-----DARWHSREDVKKALTFAEYIKA 312 (386)
Q Consensus 289 ------------~p-----~a~W~~~eel~~~L~~d~~~~~ 312 (386)
.+ +++||+.+++.+++.+++.+.+
T Consensus 81 ~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l~~~~~r~i 121 (134)
T 3i7u_A 81 KYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEI 121 (134)
T ss_dssp EEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHBCSHHHHHH
T ss_pred EEEEEEEcCCcCcCChhheEEEEEEHHHHhhhcCChHHHHH
Confidence 00 7899999999998877665443
No 9
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.61 E-value=1e-15 Score=133.27 Aligned_cols=97 Identities=31% Similarity=0.406 Sum_probs=71.2
Q ss_pred CCCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (386)
Q Consensus 211 ~C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p 290 (386)
+||.+.|.+.. +. .++.++.++||.++.. ..|.|.+|||+||+|||+++||+||++||||+++.....+..+.+.
T Consensus 5 a~G~iifr~~~---~~-~~~n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 79 (155)
T 3u53_A 5 ACGLIIFRRCL---IP-KVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRE 79 (155)
T ss_dssp EEEEEEEEECC---CS-SSSSCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE
T ss_pred EeEEEEEcccc---cc-ceeCCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeee
Confidence 57777776432 11 2233467899988864 3578999999999999999999999999999987654433221100
Q ss_pred ---------------------------------CeeEeeHHHHHHHhhhhhHHHH
Q 016616 291 ---------------------------------DARWHSREDVKKALTFAEYIKA 312 (386)
Q Consensus 291 ---------------------------------~a~W~~~eel~~~L~~d~~~~~ 312 (386)
+++||+.+++.+++.+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~ 134 (155)
T 3u53_A 80 LNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAA 134 (155)
T ss_dssp EEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHH
T ss_pred eecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHH
Confidence 7899999999998887765543
No 10
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.59 E-value=5.2e-15 Score=134.89 Aligned_cols=76 Identities=29% Similarity=0.375 Sum_probs=61.2
Q ss_pred eCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC-------------------
Q 016616 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP------------------- 290 (386)
Q Consensus 230 ~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p------------------- 290 (386)
+..+++|||++|.+. +|.|++|||+||+|||+++||+||++||||+++..+.+++.+.+.
T Consensus 50 ~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~ 128 (194)
T 2fvv_A 50 SESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLED 128 (194)
T ss_dssp STTCCEEEEEECSSC-TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSS
T ss_pred ECCCCEEEEEEEeCC-CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCCCceEEEEEEEEEccccCC
Confidence 334689999998754 489999999999999999999999999999988665554433211
Q ss_pred ---------CeeEeeHHHHHHHhhh
Q 016616 291 ---------DARWHSREDVKKALTF 306 (386)
Q Consensus 291 ---------~a~W~~~eel~~~L~~ 306 (386)
+++||+.+++.+++..
T Consensus 129 ~~~~~e~~~~~~W~~~~el~~~l~~ 153 (194)
T 2fvv_A 129 WEDSVNIGRKREWFKIEDAIKVLQY 153 (194)
T ss_dssp CHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred CCCcccccceEEEEEHHHHHHHHhc
Confidence 5799999999987654
No 11
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.59 E-value=3.9e-15 Score=126.48 Aligned_cols=97 Identities=22% Similarity=0.159 Sum_probs=73.6
Q ss_pred ceecCCCCcEEEEEEEeC-CCCE--EEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616 214 KRIYPRVDPVVIMLVIDR-ENDR--VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (386)
Q Consensus 214 ~~~ypr~~p~Vivlv~~~-~~~~--vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p 290 (386)
+. |+++.++|.++|++. .+++ +||++|.+.+ +.|++|||++++|||+++||+||++||||+++....+++.+.++
T Consensus 3 ~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 80 (139)
T 2yyh_A 3 FN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP-VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP 80 (139)
T ss_dssp CC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS-CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred cc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence 44 777777777777651 2456 9999987654 34999999999999999999999999999987655555443321
Q ss_pred ----------------------------CeeEeeHHHHH-HHhhhhhHHHH
Q 016616 291 ----------------------------DARWHSREDVK-KALTFAEYIKA 312 (386)
Q Consensus 291 ----------------------------~a~W~~~eel~-~~L~~d~~~~~ 312 (386)
+++|++.+++. +.+.+++.+.+
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~~~~~~l 131 (139)
T 2yyh_A 81 ERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPLDKLVFDHKKII 131 (139)
T ss_dssp TSCTTSCEEEEEEEEEEESCCCCCTTEEEEEEECTTSCCGGGBCTTHHHHH
T ss_pred CcCCCceEEEEEEEEecCCccCCCCCcceEEEEEHHHCCHhhcCCCHHHHH
Confidence 68999999998 44777765444
No 12
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.58 E-value=6.3e-15 Score=127.02 Aligned_cols=83 Identities=28% Similarity=0.292 Sum_probs=63.0
Q ss_pred cEEEEEEEeCCCCEEEEEEeccCC--CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC-C--------
Q 016616 222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-P-------- 290 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~~~--~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~-p-------- 290 (386)
.+|.+++++. ++++||+++.+.+ .+.|++|||++|+|||+++||+||++||||+++..+.+++.+.. +
T Consensus 6 ~~v~vi~~~~-~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 84 (145)
T 2w4e_A 6 RAVFILPVTA-QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFY 84 (145)
T ss_dssp EEEEEEEEET-TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEEE
T ss_pred CEEEEEEEcC-CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceEE
Confidence 3566666665 5789888776544 34899999999999999999999999999998765544432210 0
Q ss_pred --------------------CeeEeeHHHHHHHhh
Q 016616 291 --------------------DARWHSREDVKKALT 305 (386)
Q Consensus 291 --------------------~a~W~~~eel~~~L~ 305 (386)
+++|++.+++.+++.
T Consensus 85 ~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 119 (145)
T 2w4e_A 85 PLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLE 119 (145)
T ss_dssp EEEEEEEEEC--------CEEEEEEEHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence 678999999988654
No 13
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.58 E-value=9e-15 Score=131.39 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=72.5
Q ss_pred eecCCCC-cEEEEEE--EeCC----CCEEEEEEecc--------CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 215 RIYPRVD-PVVIMLV--IDRE----NDRVLLSRQSR--------FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 215 ~~ypr~~-p~Vivlv--~~~~----~~~vLL~rr~~--------~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
..|+++. .+|.++| ++.+ +++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++.
T Consensus 20 ~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~ 99 (187)
T 3i9x_A 20 KEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI 99 (187)
T ss_dssp ---CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred hHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 4566665 4444433 3332 35899999842 457899999999999999999999999999999987
Q ss_pred cEEEEeeeeCC--------------------------------CeeEeeHHHHHHH-hhhhhHHHHH
Q 016616 280 EVVYHTSQPWP--------------------------------DARWHSREDVKKA-LTFAEYIKAQ 313 (386)
Q Consensus 280 ~v~~~~s~p~p--------------------------------~a~W~~~eel~~~-L~~d~~~~~~ 313 (386)
.+.+++.+.++ +++|++.+++.++ +.+++...+.
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~ 166 (187)
T 3i9x_A 100 PLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLK 166 (187)
T ss_dssp CCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHH
T ss_pred ceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHHHHHH
Confidence 77766654432 7899999999864 6666655443
No 14
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.57 E-value=2.7e-14 Score=119.76 Aligned_cols=84 Identities=31% Similarity=0.478 Sum_probs=65.9
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeee----eCC--------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ----PWP-------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~----p~p-------- 290 (386)
++.++|++ +++|||+||.+ |.|++|||++++|||+++||+||++||||+++..+.+++.. +.+
T Consensus 6 ~~~~vi~~--~~~vLl~~r~~---~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2pbt_A 6 SAGGVLFK--DGEVLLIKTPS---NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEE--TTEEEEEECTT---SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeCC---CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEEEE
Confidence 45556666 56999999875 99999999999999999999999999999988655544331 100
Q ss_pred -------------------CeeEeeHHHHHHHhhhhhHHH
Q 016616 291 -------------------DARWHSREDVKKALTFAEYIK 311 (386)
Q Consensus 291 -------------------~a~W~~~eel~~~L~~d~~~~ 311 (386)
+++|++.+++.+++...+...
T Consensus 81 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 120 (134)
T 2pbt_A 81 KYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKE 120 (134)
T ss_dssp EEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHCCSHHHHH
T ss_pred EEEEEEecCCCcCCCcceeEEEEEcHHHHHhhhcchhHHH
Confidence 678999999998776655443
No 15
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=125.27 Aligned_cols=88 Identities=27% Similarity=0.470 Sum_probs=68.6
Q ss_pred EEEEEEEeCCCCEEEEEEeccC-CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC-----------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP----------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~-~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p----------- 290 (386)
+|.+++++. +++|||+++.+. ..|.|++|||++|+|||+++||+||++||||+++....+++.+...
T Consensus 22 ~v~~~i~~~-~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~f~~~ 100 (156)
T 3gg6_A 22 VVLAVFLSE-QDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERGPSWVRFVFLAR 100 (156)
T ss_dssp EEEEECBCT-TSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESSTTEEEEEEEEE
T ss_pred EEEEEEEeC-CCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCCCCEEEEEEEEE
Confidence 444455554 689999998854 3689999999999999999999999999999998766655543322
Q ss_pred -----------------CeeEeeHHHHHHHhhhhhHHH
Q 016616 291 -----------------DARWHSREDVKKALTFAEYIK 311 (386)
Q Consensus 291 -----------------~a~W~~~eel~~~L~~d~~~~ 311 (386)
+++|++.+++++++.......
T Consensus 101 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~ 138 (156)
T 3gg6_A 101 PTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILH 138 (156)
T ss_dssp EEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHH
T ss_pred eeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHH
Confidence 678999999988776555443
No 16
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.54 E-value=1.6e-14 Score=127.13 Aligned_cols=66 Identities=38% Similarity=0.461 Sum_probs=51.7
Q ss_pred cCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEe
Q 016616 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (386)
Q Consensus 217 ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~ 285 (386)
.+.....|.++|++ +++|||+||.+. .|.|++|||++|+||++++||+||++||||+++....+++
T Consensus 19 ~~~~~~~v~~ii~~--~~~vLL~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~ 84 (171)
T 3id9_A 19 ENIMQVRVTGILIE--DEKVLLVKQKVA-NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLY 84 (171)
T ss_dssp ---CEEEEEEEEEE--TTEEEEEECSST-TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCceEEEEEEEEEE--CCEEEEEEEECC-CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEE
Confidence 34445556666666 589999998753 7899999999999999999999999999999876544443
No 17
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=129.79 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=67.9
Q ss_pred eecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEee---eeCC-
Q 016616 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS---QPWP- 290 (386)
Q Consensus 215 ~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s---~p~p- 290 (386)
..+++...+|.+++++.++++|||+++.....|.|++|||+||+||++++||+||++||||+++....+++. +..+
T Consensus 20 ~~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~ 99 (199)
T 3h95_A 20 FQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPG 99 (199)
T ss_dssp ------CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC----
T ss_pred cccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCC
Confidence 356667777777788766789999998766679999999999999999999999999999998765444432 1111
Q ss_pred ----------------------------CeeEeeHHHHHHHh
Q 016616 291 ----------------------------DARWHSREDVKKAL 304 (386)
Q Consensus 291 ----------------------------~a~W~~~eel~~~L 304 (386)
+++|++.+++.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 141 (199)
T 3h95_A 100 AFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE 141 (199)
T ss_dssp -----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS
T ss_pred CceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh
Confidence 68999999998753
No 18
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.54 E-value=4.6e-14 Score=117.30 Aligned_cols=85 Identities=36% Similarity=0.574 Sum_probs=65.8
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--C----------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--P---------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~--p---------- 290 (386)
++.+++++. ++++||.|+.. |.|.+|||++++|||+++|++||++||||+++..+.+++...+ +
T Consensus 4 ~~~~vi~~~-~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T 1vcd_A 4 GAGGVVFNA-KREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWF 79 (126)
T ss_dssp EEEEEEECT-TSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEcC-CCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEE
Confidence 344556654 56899999874 8999999999999999999999999999998865554443211 1
Q ss_pred ---------------CeeEeeHHHHHHHhhhhhHHH
Q 016616 291 ---------------DARWHSREDVKKALTFAEYIK 311 (386)
Q Consensus 291 ---------------~a~W~~~eel~~~L~~d~~~~ 311 (386)
+++|++.+++.+.+.+++...
T Consensus 80 ~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~ 115 (126)
T 1vcd_A 80 LMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLG 115 (126)
T ss_dssp EEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHH
T ss_pred EEEcCCCCCCCcceeeeEEcCHHHHHHhhcChhHHH
Confidence 688999999998776655443
No 19
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.53 E-value=5e-14 Score=120.91 Aligned_cols=60 Identities=32% Similarity=0.350 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCCEEEEEEeccCC-CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~-~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~ 284 (386)
+|++++.+ +++|||+++.+.. .|.|.+|||++++|||+++||+||++||||+++....++
T Consensus 10 ~v~~ii~~--~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~ 70 (153)
T 2b0v_A 10 TVAAVIEQ--DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLT 70 (153)
T ss_dssp EEEEECEE--TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEE
T ss_pred EEEEEEee--CCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEE
Confidence 33344443 6899999988655 789999999999999999999999999999987654443
No 20
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.52 E-value=4.6e-14 Score=120.17 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=62.1
Q ss_pred cEEEEEEEeCCCCEEEEEEeccC----CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC-------
Q 016616 222 PVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP------- 290 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~~----~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p------- 290 (386)
.+|.++|.+ +++|||+||... ..|.|.+|||++++||++++||.||++||||+++....+++.+.+.
T Consensus 7 ~~v~~vi~~--~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3gwy_A 7 EVVAAVIRL--GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT 84 (140)
T ss_dssp EEEEEEEEE--TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred EEEEEEEEe--CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence 355555665 689999998753 5689999999999999999999999999999998777666554322
Q ss_pred -------------------CeeEeeHHHHHHH
Q 016616 291 -------------------DARWHSREDVKKA 303 (386)
Q Consensus 291 -------------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 85 ~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~~ 116 (140)
T 3gwy_A 85 MHAFLCHPVGQRYVLKEHIAAQWLSTREMAIL 116 (140)
T ss_dssp EEEEEEEECCSCCCCCSSCEEEEECHHHHTTS
T ss_pred EEEEEEEecCCcccccccceeEeccHHHHhhC
Confidence 5789999999874
No 21
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.52 E-value=2.5e-14 Score=123.22 Aligned_cols=62 Identities=31% Similarity=0.463 Sum_probs=50.2
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEee
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (386)
+|.+++.+ ++++||+||.....|.|.+|||++|+|||+++||+||++||||+++....+++.
T Consensus 7 ~v~~ii~~--~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 68 (153)
T 3shd_A 7 TVACVVHA--EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM 68 (153)
T ss_dssp EEEEEEEE--TTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_pred EEEEEEEe--CCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence 34444444 689999998755567899999999999999999999999999998865555443
No 22
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.52 E-value=4.4e-14 Score=129.95 Aligned_cols=97 Identities=31% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCceecCCCCcEEEEEEEeCCCCEEEEEEeccCC-------CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE
Q 016616 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~-------~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~ 284 (386)
|.+..+.+.+ +|.++++++++++|||+||.+.+ .+.|++|||+||+||++++||+||++||||+.+..+.++
T Consensus 49 ~~r~~~~~~~-av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l 127 (209)
T 1g0s_A 49 VRREIFERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPV 127 (209)
T ss_dssp EEEEEEECCC-EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_pred EEEEEEeCCC-EEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEe
Confidence 3455566655 56666677557899999887643 367999999999999999999999999999988766555
Q ss_pred eeee-CC--------------------------------CeeEeeHHHHHHHhhhhhH
Q 016616 285 TSQP-WP--------------------------------DARWHSREDVKKALTFAEY 309 (386)
Q Consensus 285 ~s~p-~p--------------------------------~a~W~~~eel~~~L~~d~~ 309 (386)
+++. .+ ++.|++.+++.+++..+..
T Consensus 128 ~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i 185 (209)
T 1g0s_A 128 LSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKI 185 (209)
T ss_dssp EEEESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSS
T ss_pred EEEecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence 4321 11 5789999999887664443
No 23
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.52 E-value=2.5e-14 Score=127.47 Aligned_cols=90 Identities=26% Similarity=0.224 Sum_probs=68.8
Q ss_pred ecCCCCcEEEEEEEeCCCCEEEEEEeccC--CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC---
Q 016616 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP--- 290 (386)
Q Consensus 216 ~ypr~~p~Vivlv~~~~~~~vLL~rr~~~--~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p--- 290 (386)
.|.+...+|.+++++. ++++||.++.+. ..|.|++|||++|+|||+++||+||++||||+++..+.+++.+...
T Consensus 36 ~~~~~~~~v~v~i~~~-~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~ 114 (182)
T 2yvp_A 36 YRPGPVAASFVLPVTE-RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSF 114 (182)
T ss_dssp EBCSSCEEEEEEEBCT-TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTT
T ss_pred EEEecCCEEEEEEEcC-CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCc
Confidence 3444445666667765 678999988753 3579999999999999999999999999999987666554432110
Q ss_pred ---------------------------CeeEeeHHHHHHHhhh
Q 016616 291 ---------------------------DARWHSREDVKKALTF 306 (386)
Q Consensus 291 ---------------------------~a~W~~~eel~~~L~~ 306 (386)
+++|++.+++.+++..
T Consensus 115 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 157 (182)
T 2yvp_A 115 TAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAK 157 (182)
T ss_dssp BCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHT
T ss_pred cccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHc
Confidence 6889999999886653
No 24
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.52 E-value=2e-14 Score=131.58 Aligned_cols=89 Identities=17% Similarity=0.311 Sum_probs=70.1
Q ss_pred CCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--
Q 016616 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-- 289 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~-- 289 (386)
|....|++..++|.++|++ +++|||+|+.. .|.|++|||++++|||+++||+||++||||+++....+++.+.+
T Consensus 59 ~~~~~~~~~~~~v~~vv~~--~~~vLLv~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~ 134 (205)
T 3q1p_A 59 ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEK 134 (205)
T ss_dssp SCCCSSCCCEEEEEEEEEE--TTEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCcceEEEEEEE--CCEEEEEEEcC--CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence 3444588888888888887 67999999873 68999999999999999999999999999999876655544321
Q ss_pred ---C---------------------------CeeEeeHHHHHHHh
Q 016616 290 ---P---------------------------DARWHSREDVKKAL 304 (386)
Q Consensus 290 ---p---------------------------~a~W~~~eel~~~L 304 (386)
+ +++|++.++++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~ 179 (205)
T 3q1p_A 135 HQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLS 179 (205)
T ss_dssp HSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBC
T ss_pred cCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcC
Confidence 0 78999999998743
No 25
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.51 E-value=2.8e-14 Score=124.55 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=66.4
Q ss_pred eecCCCCcEEEEEEEeCCCCEEEEEEeccC-CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC---
Q 016616 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP--- 290 (386)
Q Consensus 215 ~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~-~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p--- 290 (386)
...++...+|.++|++ +++|||++|.+. ..|.|.+|||++++|||+++||+||++|||||++....+++.+.+.
T Consensus 23 ~~~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 100 (157)
T 4dyw_A 23 QHTEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAA 100 (157)
T ss_dssp ---CCCEEEEEEEEEE--TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETT
T ss_pred CCCCCceeEEEEEEEE--CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccC
Confidence 3344445566666776 589999988754 4689999999999999999999999999999988655444322110
Q ss_pred ----------------------------CeeEeeHHHHHHHhh
Q 016616 291 ----------------------------DARWHSREDVKKALT 305 (386)
Q Consensus 291 ----------------------------~a~W~~~eel~~~L~ 305 (386)
+++|++.+++.+.+.
T Consensus 101 ~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~ 143 (157)
T 4dyw_A 101 NGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPLT 143 (157)
T ss_dssp TTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSSBC
T ss_pred CCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHcccccC
Confidence 678999999987544
No 26
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.51 E-value=4.9e-14 Score=124.36 Aligned_cols=88 Identities=31% Similarity=0.390 Sum_probs=68.7
Q ss_pred eecCCCCcEEEEEEEeCCCCEEEEEEeccC--CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC--
Q 016616 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-- 290 (386)
Q Consensus 215 ~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~--~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p-- 290 (386)
..+.+..++|.+++++ ++++||+++.+. ..|.|.+|||++|+|||+++||+||++||||+ +..+.+++.+...
T Consensus 28 ~~~~~~~~~v~vii~~--~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~ 104 (170)
T 1v8y_A 28 YEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPG 104 (170)
T ss_dssp EEEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTT
T ss_pred EEEEecCCeEEEEEEE--CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCC
Confidence 3344444677777777 679999988654 46799999999999999999999999999999 7766665543211
Q ss_pred ---------------------------CeeEeeHHHHHHHhh
Q 016616 291 ---------------------------DARWHSREDVKKALT 305 (386)
Q Consensus 291 ---------------------------~a~W~~~eel~~~L~ 305 (386)
+++|++.+++.+++.
T Consensus 105 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 146 (170)
T 1v8y_A 105 FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQ 146 (170)
T ss_dssp TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHH
T ss_pred ccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHH
Confidence 678999999988664
No 27
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.50 E-value=5.8e-14 Score=119.68 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=67.5
Q ss_pred CCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeee------CC--
Q 016616 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP------WP-- 290 (386)
Q Consensus 219 r~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p------~p-- 290 (386)
+..+.+.++|++.++++|||.|+. .|.|.+|||++++||++++||+||++||||+.+..+.+++.+. ..
T Consensus 16 ~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 92 (148)
T 2azw_A 16 QTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 92 (148)
T ss_dssp EECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTE
T ss_pred eeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCc
Confidence 334566666666446899999974 4899999999999999999999999999999886554443321 00
Q ss_pred -------------------------CeeEeeHHHHHHHhhhhhHH
Q 016616 291 -------------------------DARWHSREDVKKALTFAEYI 310 (386)
Q Consensus 291 -------------------------~a~W~~~eel~~~L~~d~~~ 310 (386)
+++|++.+++.+++......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 137 (148)
T 2azw_A 93 AYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHR 137 (148)
T ss_dssp EEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHH
T ss_pred ceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhhhcchhHH
Confidence 67899999999876654443
No 28
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.50 E-value=9e-14 Score=125.92 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=70.7
Q ss_pred ceecCCCCcEEEEEEEeCCCCEEEEEEeccC--------CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEe
Q 016616 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (386)
Q Consensus 214 ~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~--------~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~ 285 (386)
+..+++.. +|.+++++.+++++||+|+.+. ..+.|++|||++| ||++++||+||++||||+++..+.+++
T Consensus 39 r~~~~~~~-av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~ 116 (191)
T 3o6z_A 39 REVYDRGN-GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLF 116 (191)
T ss_dssp EEEEECCC-EEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEE
T ss_pred EEEEecCC-EEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEE
Confidence 34556655 4445566655689999998764 4578999999999 999999999999999999987776665
Q ss_pred eeeC-C-------------------------------CeeEeeHHHHHHHhhhhhH
Q 016616 286 SQPW-P-------------------------------DARWHSREDVKKALTFAEY 309 (386)
Q Consensus 286 s~p~-p-------------------------------~a~W~~~eel~~~L~~d~~ 309 (386)
.+.. + +++|++.+++.+++..+..
T Consensus 117 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i 172 (191)
T 3o6z_A 117 ELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEI 172 (191)
T ss_dssp EEESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSC
T ss_pred EEEeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence 4211 1 6889999999987765443
No 29
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.49 E-value=1.4e-13 Score=116.09 Aligned_cols=88 Identities=26% Similarity=0.372 Sum_probs=62.7
Q ss_pred EEEEEEEeCC--CCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE----eeee--------
Q 016616 223 VVIMLVIDRE--NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQP-------- 288 (386)
Q Consensus 223 ~Vivlv~~~~--~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~----~s~p-------- 288 (386)
++.+++++.+ ++++||.++. ...|.|.+|||++++|||+++||+||++||||+.+..+... +...
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~-~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPK 83 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEES-STTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEecCCCcEEEEEEcc-CCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCce
Confidence 3444455432 3589999886 44679999999999999999999999999999954332211 1110
Q ss_pred ----------C-C---------CeeEeeHHHHHHHhhhhhHHH
Q 016616 289 ----------W-P---------DARWHSREDVKKALTFAEYIK 311 (386)
Q Consensus 289 ----------~-p---------~a~W~~~eel~~~L~~d~~~~ 311 (386)
. . +++|++.+++.+++.+.+...
T Consensus 84 ~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 126 (138)
T 1ktg_A 84 SVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGS 126 (138)
T ss_dssp EEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHH
T ss_pred EEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhhccchHHH
Confidence 0 0 689999999999776655443
No 30
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.49 E-value=2.2e-13 Score=123.45 Aligned_cols=88 Identities=15% Similarity=0.274 Sum_probs=65.7
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCe-ecc---------------------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE-VGE--------------------- 280 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~-v~~--------------------- 280 (386)
++.++|++.++++|||+++. ..|.|++|||+||+|||+++||+||++||||++ +..
T Consensus 47 ~~~~vv~~~~~~~vLL~~r~--~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (197)
T 3fcm_A 47 TSSAFAVNKERNKFLMIHHN--IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGK 124 (197)
T ss_dssp EEEEEEECTTSCEEEEEEET--TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTE
T ss_pred EEEEEEEECCCCEEEEEEec--CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCc
Confidence 45566677656699999987 367999999999999999999999999999997 321
Q ss_pred ---------EEEEeeeeCC-----------CeeEeeHHHHHHHhhhhhHHHH
Q 016616 281 ---------VVYHTSQPWP-----------DARWHSREDVKKALTFAEYIKA 312 (386)
Q Consensus 281 ---------v~~~~s~p~p-----------~a~W~~~eel~~~L~~d~~~~~ 312 (386)
+.|+...... +++|++.+++.+++.......+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~i 176 (197)
T 3fcm_A 125 YVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPI 176 (197)
T ss_dssp EECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHH
T ss_pred ccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHH
Confidence 1111111100 7899999999998776665443
No 31
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.49 E-value=3.7e-14 Score=129.94 Aligned_cols=88 Identities=19% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--
Q 016616 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-- 289 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~-- 289 (386)
|....|++..+.|.++|++ +++|||+|+. .|.|++|||++++|||+++||+||++||||+++..+.+++.+.+
T Consensus 61 ~~~~~y~~~~~~v~~vv~~--~~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 135 (206)
T 3o8s_A 61 CNETGYQTPKLDTRAAIFQ--EDKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135 (206)
T ss_dssp -------CCEEEEEEEEEE--TTEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCCccEEEEEEE--CCEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence 3444578777778777877 5899999987 78999999999999999999999999999999876665554321
Q ss_pred ---C---------------------------CeeEeeHHHHHHHh
Q 016616 290 ---P---------------------------DARWHSREDVKKAL 304 (386)
Q Consensus 290 ---p---------------------------~a~W~~~eel~~~L 304 (386)
+ +++|++.++++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~ 180 (206)
T 3o8s_A 136 NNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLY 180 (206)
T ss_dssp HCC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBC
T ss_pred cCCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhcc
Confidence 0 68899999998743
No 32
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.48 E-value=8e-14 Score=127.22 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=66.6
Q ss_pred EEEEEEEeCCCCEEEEEEeccCC--CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC----------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP---------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~--~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p---------- 290 (386)
+|++++++. + +|||+||.+.+ .+.|++|||+||+||++++||+||++||||+++..+.+++.+...
T Consensus 51 av~vl~~~~-~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 128 (198)
T 1vhz_A 51 AVMIVPIVD-D-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNI 128 (198)
T ss_dssp EEEEEEEET-T-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEE
T ss_pred EEEEEEEEC-C-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEE
Confidence 555555664 3 99999887543 468999999999999999999999999999998777666544211
Q ss_pred -------------------CeeEeeHHHHHHHhhhhhH
Q 016616 291 -------------------DARWHSREDVKKALTFAEY 309 (386)
Q Consensus 291 -------------------~a~W~~~eel~~~L~~d~~ 309 (386)
++.|++.+++.+++..+..
T Consensus 129 f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~i 166 (198)
T 1vhz_A 129 VVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDF 166 (198)
T ss_dssp EEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred EEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCCC
Confidence 6789999999987765443
No 33
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.47 E-value=7e-14 Score=124.83 Aligned_cols=72 Identities=26% Similarity=0.486 Sum_probs=58.8
Q ss_pred CCCEEEEEEecc-CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC--------------------
Q 016616 232 ENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------------------- 290 (386)
Q Consensus 232 ~~~~vLL~rr~~-~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p-------------------- 290 (386)
++++|||++|.+ ...|.|++|||++|+||++++||+||++||||+++..+.+++.+.+.
T Consensus 34 ~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 113 (176)
T 3q93_A 34 QPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQG 113 (176)
T ss_dssp CSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEEEEEESCEES
T ss_pred eCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 378999988764 34789999999999999999999999999999998766665543211
Q ss_pred --------CeeEeeHHHHHHH
Q 016616 291 --------DARWHSREDVKKA 303 (386)
Q Consensus 291 --------~a~W~~~eel~~~ 303 (386)
+++|++.+++.+.
T Consensus 114 ~~~~~e~~~~~W~~~~el~~~ 134 (176)
T 3q93_A 114 TPVESDEMRPCWFQLDQIPFK 134 (176)
T ss_dssp CCCCCSSEEEEEEETTCCCGG
T ss_pred CcCCCcceeeEEeeHHHcccc
Confidence 6789999998763
No 34
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.47 E-value=6.8e-14 Score=120.87 Aligned_cols=80 Identities=31% Similarity=0.463 Sum_probs=61.4
Q ss_pred EEEEEEEeCCCCEEEEEEecc---CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--C-------
Q 016616 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--P------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~---~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~--p------- 290 (386)
+|.++|++. +++|||++|.. ...|.|.+|||++++|||+++||+||++||||+.+....+++.+.+ +
T Consensus 10 ~v~~vi~~~-~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 88 (153)
T 3grn_A 10 SVYALIRNE-KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVIAI 88 (153)
T ss_dssp EEEEEEECT-TCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEcC-CCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEEEE
Confidence 455556654 67888888874 3578999999999999999999999999999998754433332211 1
Q ss_pred ------------------CeeEeeHHHHHHH
Q 016616 291 ------------------DARWHSREDVKKA 303 (386)
Q Consensus 291 ------------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 89 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 119 (153)
T 3grn_A 89 VFDGGYVVADVKLSYEHIEYSWVSLEKILGM 119 (153)
T ss_dssp EEEEEECCCCCCCCTTEEEEEEECHHHHTTC
T ss_pred EEEEEecCCcEecCCCcceEEEEEHHHhhhc
Confidence 6789999999774
No 35
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.47 E-value=4.8e-13 Score=113.79 Aligned_cols=62 Identities=29% Similarity=0.549 Sum_probs=50.4
Q ss_pred cCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 217 ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
|++. .+|.++|++.+++++||.++... +|.|.+|||++++|||+++||+||++||||+++..
T Consensus 6 ~~~~-~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~ 67 (150)
T 2o1c_A 6 YKRP-VSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA 67 (150)
T ss_dssp CBCS-EEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHH
T ss_pred ccCc-eEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence 5444 35556667754589999988754 68999999999999999999999999999997743
No 36
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.47 E-value=3.5e-13 Score=115.67 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 231 ~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
.++++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++..
T Consensus 17 ~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~ 64 (149)
T 3son_A 17 EANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDV 64 (149)
T ss_dssp SSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCC
T ss_pred CCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3467899999875 38999999999999999999999999999998653
No 37
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.47 E-value=4.8e-14 Score=123.53 Aligned_cols=83 Identities=27% Similarity=0.430 Sum_probs=64.5
Q ss_pred CcEEEEEEEeCCCCEEEEEEecc-CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC---------
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP--------- 290 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~-~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p--------- 290 (386)
..++.++|++.++++|||++|.. .+.|.|++|||++++|||+++||+||++||||+++..+.+++.+.+.
T Consensus 10 ~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T 3exq_A 10 ELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQHRKL 89 (161)
T ss_dssp EEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCSSEEE
T ss_pred eEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCCeEEE
Confidence 34555666665336899998874 34578999999999999999999999999999998766555443211
Q ss_pred -------------------CeeEeeHHHHHHH
Q 016616 291 -------------------DARWHSREDVKKA 303 (386)
Q Consensus 291 -------------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 121 (161)
T 3exq_A 90 GLLYRASNFTGTLKASAEGQLSWLPITALTRE 121 (161)
T ss_dssp EEEEEECCEESCCCGGGTTTEEEECGGGCCTT
T ss_pred EEEEEEeccCCccCCCccceEEEeeHHHhhhC
Confidence 7899999999875
No 38
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.46 E-value=4.9e-14 Score=122.31 Aligned_cols=62 Identities=37% Similarity=0.556 Sum_probs=49.2
Q ss_pred CcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEee
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (386)
.++|.+++++. +++|||++|. .|.|.+|||++++||++++||+||++||||+++..+.+++.
T Consensus 21 ~~~v~~ii~~~-~~~vLL~~r~---~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 82 (153)
T 3eds_A 21 XPSVAAVIKNE-QGEILFQYPG---GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGV 82 (153)
T ss_dssp EEEEEEEEBCT-TCCEEEECC------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred eeeEEEEEEcC-CCeEEEEEcC---CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEE
Confidence 34566666664 6789998876 78999999999999999999999999999999876665553
No 39
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.45 E-value=1.2e-13 Score=122.47 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=61.4
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC------------
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP------------ 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p------------ 290 (386)
.++++|++. ++++||.++. .|.|++|||+|++|||+++||+||++||||+++..+.+++.+.++
T Consensus 17 ~~~~~ii~~-~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~f~~~~~ 92 (163)
T 3f13_A 17 RRATAIIEM-PDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPFNAHKVYLCIAQ 92 (163)
T ss_dssp EEEEEECEE-TTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSSEEEEEEEEEC-
T ss_pred EEEEEEEEe-CCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCCeEEEEEEEEEC
Confidence 333334443 6789998876 589999999999999999999999999999998877777665543
Q ss_pred ----------CeeEeeHHHHHHHhhhhhHHHH
Q 016616 291 ----------DARWHSREDVKKALTFAEYIKA 312 (386)
Q Consensus 291 ----------~a~W~~~eel~~~L~~d~~~~~ 312 (386)
+++||+.+.....+..++...+
T Consensus 93 ~~~~~~~E~~~~~W~~~~~~~~~l~~~~~~il 124 (163)
T 3f13_A 93 GQPKPQNEIERIALVSSPDTDMDLFVEGRAIL 124 (163)
T ss_dssp CCCCCCTTCCEEEEESSTTCSSCBCHHHHHHH
T ss_pred CcCccCCCceEEEEECcccccCCCCHHHHHHH
Confidence 6789995544333444444333
No 40
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.45 E-value=2.7e-13 Score=117.07 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=65.6
Q ss_pred CCCCcEEEEEEEeCCCCEEEEEEeccC-----CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeee--C-
Q 016616 218 PRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP--W- 289 (386)
Q Consensus 218 pr~~p~Vivlv~~~~~~~vLL~rr~~~-----~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p--~- 289 (386)
+...+++.++|++. ++++||++|.+. ..|.|.+|||++++||++++||+||++||||+.+..+.+++.+. +
T Consensus 10 ~~~~~~~~~vi~~~-~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~ 88 (159)
T 1sjy_A 10 PVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFP 88 (159)
T ss_dssp CCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECT
T ss_pred CeEEEeEEEEEEeC-CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccC
Confidence 44455666667664 578999988752 46899999999999999999999999999999875544333221 0
Q ss_pred -----------------------C-----CeeEeeHHHHHHHhh
Q 016616 290 -----------------------P-----DARWHSREDVKKALT 305 (386)
Q Consensus 290 -----------------------p-----~a~W~~~eel~~~L~ 305 (386)
. +++|++.+++.+++.
T Consensus 89 ~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 132 (159)
T 1sjy_A 89 DGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYA 132 (159)
T ss_dssp TSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHH
T ss_pred CCceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhh
Confidence 0 578999999988654
No 41
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=6.7e-14 Score=119.61 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=48.1
Q ss_pred CcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
.+++.++|++.++++|||+|+.. .|.|.+|||++++|||+++||+||++||||+++.
T Consensus 4 i~~~~~~i~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 60 (146)
T 2jvb_A 4 IPVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60 (146)
T ss_dssp SCCEEEEEBCTTSSEEEEECCSS--SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCS
T ss_pred eEEEEEEEEeCCCCEEEEEEEcC--CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence 34566667765458999998763 5899999999999999999999999999999764
No 42
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.43 E-value=3.1e-13 Score=117.54 Aligned_cols=54 Identities=37% Similarity=0.484 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
++.++|++ +++|||+++.. .|.|.+|||++|+|||+++|++||++||||+++..
T Consensus 3 ~~~~vi~~--~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~ 56 (156)
T 1k2e_A 3 VTSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56 (156)
T ss_dssp EEEEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEE
T ss_pred EEEEEEEE--CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCccee
Confidence 34455566 68999999864 68999999999999999999999999999998743
No 43
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.43 E-value=7.6e-13 Score=114.51 Aligned_cols=57 Identities=25% Similarity=0.425 Sum_probs=48.1
Q ss_pred CcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
.++|.+++++. +++|||++|... +|.|++|||++++|||+++||+||++||||+++.
T Consensus 14 ~~~v~~~i~~~-~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~ 70 (165)
T 1f3y_A 14 RRNVGICLMNN-DKKIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70 (165)
T ss_dssp CCEEEEEEECT-TSCEEEEEETTE-EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred eeeEEEEEECC-CCcEEEEecCCC-CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence 34666667765 578999988753 4899999999999999999999999999999764
No 44
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=126.55 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=66.0
Q ss_pred cEEEEEEEeCCCCEEEEEEeccCC---------------------------------CCceEeeeeecCC-CCCHHHHHH
Q 016616 222 PVVIMLVIDRENDRVLLSRQSRFV---------------------------------PRMWSCIAGFIEP-GESLEEAVR 267 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~~~---------------------------------~g~wslPgG~Ve~-GEtleeAa~ 267 (386)
.+|.+++++.+++++||+||.+++ .+.|++|||+||+ |||+++||+
T Consensus 37 ~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~ 116 (218)
T 3q91_A 37 DSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVAC 116 (218)
T ss_dssp CEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHHH
T ss_pred CeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHHH
Confidence 466666777657899999987643 4689999999999 999999999
Q ss_pred HHHHHHhCCee--ccEEEEeeeeC-C---------------------------------CeeEeeHHHHHHHhh
Q 016616 268 RETWEETGIEV--GEVVYHTSQPW-P---------------------------------DARWHSREDVKKALT 305 (386)
Q Consensus 268 REv~EEtGl~v--~~v~~~~s~p~-p---------------------------------~a~W~~~eel~~~L~ 305 (386)
||++||||+.+ ..+.+++++.. + ++.|++.+++.+++.
T Consensus 117 REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~ 190 (218)
T 3q91_A 117 KEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFAD 190 (218)
T ss_dssp HHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHH
T ss_pred HHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence 99999999987 66655543211 0 678999999988664
No 45
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.42 E-value=5.2e-13 Score=116.69 Aligned_cols=57 Identities=33% Similarity=0.548 Sum_probs=44.7
Q ss_pred EEEEEEeCCCCEEEEEEecc---CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 016616 224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281 (386)
Q Consensus 224 Vivlv~~~~~~~vLL~rr~~---~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v 281 (386)
++++|++. +++|||++|.. ...|.|++|||++++||++++||+||++||||+++...
T Consensus 30 ~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 89 (165)
T 3oga_A 30 IVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILS 89 (165)
T ss_dssp EEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEE
T ss_pred EEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence 33444443 68999998763 34689999999999999999999999999999987533
No 46
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.41 E-value=1.2e-12 Score=110.47 Aligned_cols=71 Identities=30% Similarity=0.450 Sum_probs=56.8
Q ss_pred CCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--C------------------
Q 016616 233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--P------------------ 290 (386)
Q Consensus 233 ~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~--p------------------ 290 (386)
+++|||.++.. ...|.|++|||++++||++++|++||++||||+.+..+.+++.+.+ +
T Consensus 19 ~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (140)
T 2rrk_A 19 DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTL 98 (140)
T ss_dssp TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEEEESEEEECC
T ss_pred CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEEEEEeeCCCc
Confidence 67999998864 3468999999999999999999999999999998755444332211 0
Q ss_pred ------CeeEeeHHHHHHH
Q 016616 291 ------DARWHSREDVKKA 303 (386)
Q Consensus 291 ------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 99 ~~~e~~~~~W~~~~el~~~ 117 (140)
T 2rrk_A 99 QAHEHQALVWCSPEEALQY 117 (140)
T ss_dssp CCSSCSCEEEECHHHHTTS
T ss_pred CCCccceeEEeCHHHHhhC
Confidence 6789999999874
No 47
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.41 E-value=2.3e-13 Score=118.43 Aligned_cols=53 Identities=34% Similarity=0.460 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
+|.++|++ +++|||+|+.+ .|.|.+|||+||+|||+++||+||++||||+++.
T Consensus 8 ~v~~vi~~--~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 60 (159)
T 3f6a_A 8 TVSVFIVC--KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVT 60 (159)
T ss_dssp EEEEEEEE--TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCE
T ss_pred EEEEEEEE--CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCce
Confidence 45556666 57999999875 6899999999999999999999999999999864
No 48
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.41 E-value=4.5e-13 Score=118.73 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=61.8
Q ss_pred EEEEEEEeCCCCEEEEEEecc---CCCCceEe-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC--------
Q 016616 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------- 290 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~---~~~g~wsl-PgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p-------- 290 (386)
++.+++++. +++|||.+|.. ..+|+|.+ |||++++|||+++||+||++||||+.+..+.+++.+.+.
T Consensus 39 ~~~v~i~~~-~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 117 (180)
T 2fkb_A 39 ATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG 117 (180)
T ss_dssp EEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred EEEEEEECC-CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence 555556664 56899888863 23689999 999999999999999999999999976554443332111
Q ss_pred -------------------CeeEeeHHHHHHHh
Q 016616 291 -------------------DARWHSREDVKKAL 304 (386)
Q Consensus 291 -------------------~a~W~~~eel~~~L 304 (386)
+++|++.+++.+++
T Consensus 118 ~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T 2fkb_A 118 ALFSCVSHGPFALQEDEVSEVCWLTPEEITARC 150 (180)
T ss_dssp EEEEEECCCCCCCCTTTEEEEEEECHHHHHTTG
T ss_pred EEEEEecCCCcCCChhHhheEEEecHHHHHHHH
Confidence 67899999998854
No 49
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.41 E-value=4.4e-13 Score=114.59 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=58.7
Q ss_pred EEEEeCCCCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeC--C-----------
Q 016616 226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--P----------- 290 (386)
Q Consensus 226 vlv~~~~~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~--p----------- 290 (386)
++|++. +++|||.+|.. ...|.|++|||++|+||++++||.||++||||+.+....+++...+ +
T Consensus 26 ~~i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (153)
T 3ees_A 26 AGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILILFYEI 104 (153)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEE-CCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEEEEEE
Confidence 334443 68999998874 3468999999999999999999999999999998754433322111 0
Q ss_pred -------------CeeEeeHHHHHHH
Q 016616 291 -------------DARWHSREDVKKA 303 (386)
Q Consensus 291 -------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 105 ~~~~~~~~~~e~~~~~W~~~~el~~~ 130 (153)
T 3ees_A 105 LYWKGEPRAKHHMMLEWIHPEELKHR 130 (153)
T ss_dssp CEEESCCCCSSSSEEEEECGGGGGGS
T ss_pred EECCCCcCCCccceEEEecHHHhhhC
Confidence 6789999998763
No 50
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.41 E-value=5.7e-13 Score=120.35 Aligned_cols=57 Identities=42% Similarity=0.662 Sum_probs=47.5
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEE
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~ 283 (386)
+++++|.+ +++|||.++. ..|.|.+|||+||+|||+++||+||++||||+++....+
T Consensus 6 v~~~vi~~--~~~vLL~~r~--~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~ 62 (188)
T 3fk9_A 6 VTNCIVVD--HDQVLLLQKP--RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPEL 62 (188)
T ss_dssp EEEEEEEE--TTEEEEEECT--TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEE
T ss_pred EEEEEEEE--CCEEEEEEeC--CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceE
Confidence 45555555 6799999975 378999999999999999999999999999998765443
No 51
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.41 E-value=5e-13 Score=122.36 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=67.4
Q ss_pred cEEEEEEEeCCCCEEEEEEeccCC--CCceEeeeeecC-CCCCHHHHHHHHHHHHhCCeeccEEEEeeee-CC-------
Q 016616 222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQP-WP------- 290 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~~~--~g~wslPgG~Ve-~GEtleeAa~REv~EEtGl~v~~v~~~~s~p-~p------- 290 (386)
.+|.+++++. +++|||+||.+.+ .+.|++|||+|| +||++++||+||++||||+++..+.+++.+. .+
T Consensus 44 ~av~v~i~~~-~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 122 (207)
T 1mk1_A 44 GAVAIVAMDD-NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESV 122 (207)
T ss_dssp CEEEEEECCT-TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCE
T ss_pred CEEEEEEEcC-CCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEE
Confidence 4666666664 6899999887543 569999999999 9999999999999999999887665554321 00
Q ss_pred -----------------------CeeEeeHHHHHHHhhhhh
Q 016616 291 -----------------------DARWHSREDVKKALTFAE 308 (386)
Q Consensus 291 -----------------------~a~W~~~eel~~~L~~d~ 308 (386)
+++|++.+++.+++..+.
T Consensus 123 ~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 163 (207)
T 1mk1_A 123 RVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGE 163 (207)
T ss_dssp EEEEEEEEEECCC----------CEEEEEHHHHHHHHHTTS
T ss_pred EEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence 678999999998776554
No 52
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.40 E-value=3.4e-13 Score=114.53 Aligned_cols=58 Identities=34% Similarity=0.551 Sum_probs=47.5
Q ss_pred cEEEEEEEeCCCCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
.++.+++++. +++|||+||.. ...|.|++|||++++||++++|++||++||||+.+..
T Consensus 9 ~~~~~vi~~~-~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~ 68 (144)
T 3r03_A 9 LVTAAALIDP-DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRA 68 (144)
T ss_dssp EEEEEEEBCT-TSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCG
T ss_pred EEEEEEEEcC-CCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeec
Confidence 3445555554 57899998873 3568999999999999999999999999999998754
No 53
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.40 E-value=9.6e-13 Score=115.65 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=64.7
Q ss_pred CcEEEEEEEeCCCCEEEEEEeccC---CCCceE-eeeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEeeee-CC---
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSRF---VPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP-WP--- 290 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~~---~~g~ws-lPgG~Ve~GEtleeAa~REv~EEtGl~v~~--v~~~~s~p-~p--- 290 (386)
.+++.+++++. ++++||.||... .+|+|+ +|||+|++|||+++||+||++||||+++.. +.+++++. +.
T Consensus 34 ~~~v~v~i~~~-~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 112 (171)
T 1q27_A 34 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL 112 (171)
T ss_dssp CEEEEEEEEET-TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred ceEEEEEEECC-CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence 45666667765 579999987532 368998 999999999999999999999999998754 44544433 22
Q ss_pred -----------------------CeeEeeHHHHHHHh
Q 016616 291 -----------------------DARWHSREDVKKAL 304 (386)
Q Consensus 291 -----------------------~a~W~~~eel~~~L 304 (386)
+++|++.+++.+++
T Consensus 113 ~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 149 (171)
T 1q27_A 113 SSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARI 149 (171)
T ss_dssp SSEEEEEEEECCCCCCSCTTTCSCCEEECHHHHHHHH
T ss_pred ccEEEEEEEEECCccccCchhhheEEEecHHHHHHHH
Confidence 78899999998743
No 54
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.38 E-value=7.7e-13 Score=118.86 Aligned_cols=82 Identities=23% Similarity=0.399 Sum_probs=62.7
Q ss_pred EEEEEEEeCCCCEEEEEEecc---CCCCceEe-eeeecCCCCCHHHHHHHHHHHHhCCeeccE-EEEeeeeC--------
Q 016616 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPW-------- 289 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~---~~~g~wsl-PgG~Ve~GEtleeAa~REv~EEtGl~v~~v-~~~~s~p~-------- 289 (386)
+|.++|++. +++|||.+|.. ..+|.|++ |||+|++|||+++||+||++||||+++..+ .+++.+.+
T Consensus 34 ~v~~~i~~~-~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 34 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI 112 (190)
T ss_dssp CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred EEEEEEEcC-CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence 445566664 57899988863 24689999 999999999999999999999999987655 43322110
Q ss_pred --------------------C----CeeEeeHHHHHHHhh
Q 016616 290 --------------------P----DARWHSREDVKKALT 305 (386)
Q Consensus 290 --------------------p----~a~W~~~eel~~~L~ 305 (386)
+ +++|++.+++.+++.
T Consensus 113 ~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 152 (190)
T 1hzt_A 113 VENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGID 152 (190)
T ss_dssp EEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred cceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHH
Confidence 0 689999999998654
No 55
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.37 E-value=1e-12 Score=113.35 Aligned_cols=52 Identities=31% Similarity=0.479 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
++.++|++ +++|||.+| .|.|.+|||++++||++++||+||++||||+++..
T Consensus 21 ~~~~ii~~--~~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 72 (154)
T 2pqv_A 21 RATALIVQ--NHKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQA 72 (154)
T ss_dssp EEEECCEE--TTEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEE
T ss_pred EEEEEEEE--CCEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeee
Confidence 44445555 689999988 58999999999999999999999999999998753
No 56
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.36 E-value=8.2e-13 Score=114.63 Aligned_cols=57 Identities=33% Similarity=0.571 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
++.++|++. +++|||++|.. ...|.|++|||++|+||++++||+||++||||+.+..
T Consensus 31 ~~~~~i~~~-~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~ 89 (158)
T 3hhj_A 31 VVACALLDQ-DNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQA 89 (158)
T ss_dssp EEEEEEBCT-TSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCG
T ss_pred EEEEEEEeC-CCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeec
Confidence 444555554 68999999873 3468999999999999999999999999999998754
No 57
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.36 E-value=8.3e-13 Score=118.86 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=48.2
Q ss_pred cEEEEEEEeCCCC--EEEEEEecc---CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEe
Q 016616 222 PVVIMLVIDREND--RVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (386)
Q Consensus 222 p~Vivlv~~~~~~--~vLL~rr~~---~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~ 285 (386)
.++++++++. ++ +|||++|.. ...|.|++|||++|+||++++||+||++||||+++..+.+++
T Consensus 35 ~~~~~v~i~~-~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~ 102 (194)
T 1nqz_A 35 RAAVLVALTR-EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLG 102 (194)
T ss_dssp EEEEEEEEES-SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEEEEEec-CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEE
Confidence 3444445554 44 899998863 357899999999999999999999999999999876554443
No 58
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.36 E-value=3.3e-13 Score=129.45 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=53.2
Q ss_pred ecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeec
Q 016616 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 216 ~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~ 279 (386)
.|.+..+++.++|++.++++|||+++.+. +|.|.+|||+||+|||+++||+||++||||+++.
T Consensus 96 ~~~~~v~~v~avv~~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~ 158 (271)
T 2a6t_A 96 RYKTRIPVRGAIMLDMSMQQCVLVKGWKA-SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS 158 (271)
T ss_dssp HHSCCCCEEEEEEBCSSSSEEEEEEESST-TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCT
T ss_pred hcCCCCCeEEEEEEECCCCEEEEEEEeCC-CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCce
Confidence 35555667777777755589999998753 5899999999999999999999999999999874
No 59
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.35 E-value=7.7e-13 Score=114.08 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCCCcEEEEEEEeCCCCE--EEEEEeccC-CCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC----
Q 016616 218 PRVDPVVIMLVIDRENDR--VLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP---- 290 (386)
Q Consensus 218 pr~~p~Vivlv~~~~~~~--vLL~rr~~~-~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p---- 290 (386)
+....++.++|.+.+.++ +||.+|... ..| |.+|||++++|||+++||+||++||||+++....+++...+.
T Consensus 5 ~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 2b06_A 5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG 83 (155)
T ss_dssp GCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred cCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence 344456667777632222 888877643 345 999999999999999999999999999987654444322110
Q ss_pred -----------------------CeeEeeHHHHHHH
Q 016616 291 -----------------------DARWHSREDVKKA 303 (386)
Q Consensus 291 -----------------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 119 (155)
T 2b06_A 84 GRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNL 119 (155)
T ss_dssp CEEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGGS
T ss_pred ceEEEEEEEEEecCCCCCCCcceeeEEeeHHHhhhC
Confidence 5899999999874
No 60
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.35 E-value=2.9e-12 Score=110.66 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=46.7
Q ss_pred cEEEEEEEeCCCCEEEEEEecc-CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCee
Q 016616 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~-~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v 278 (386)
.+|.++|++. +++|||.+|.. ...|.|++|||++++||++++||+||++||||+.+
T Consensus 19 ~~v~~vi~~~-~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~ 75 (160)
T 1rya_A 19 VSLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL 75 (160)
T ss_dssp EEEEEEEECT-TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred EEEEEEEEcC-CCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCC
Confidence 4555666664 67888888874 33689999999999999999999999999999984
No 61
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.34 E-value=2.8e-12 Score=117.79 Aligned_cols=61 Identities=33% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCcEEEEEEEeCC--CCEEEEEEeccCC--CCceEeeeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 016616 220 VDPVVIMLVIDRE--NDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 220 ~~p~Vivlv~~~~--~~~vLL~rr~~~~--~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~ 280 (386)
.+.++++.++..+ +++|||++|.+.+ .+.|++|||+||+||++++||+||++||||+.+..
T Consensus 61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~ 125 (212)
T 2dsc_A 61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDI 125 (212)
T ss_dssp CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEE
T ss_pred CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3444444444432 3589999886543 45899999999999999999999999999997643
No 62
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.33 E-value=2.3e-12 Score=119.74 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=56.1
Q ss_pred CCEEEEEEeccC-----CCCceEe-eeeecCCCCC------HHHHHHHHHHHHhCCeeccEEEEeeeeCC----------
Q 016616 233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGES------LEEAVRRETWEETGIEVGEVVYHTSQPWP---------- 290 (386)
Q Consensus 233 ~~~vLL~rr~~~-----~~g~wsl-PgG~Ve~GEt------leeAa~REv~EEtGl~v~~v~~~~s~p~p---------- 290 (386)
++++||.+|... ..|.|++ |||+||+||| +++|++||++|||||++..+.+++...+.
T Consensus 78 ~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~~~~l~ 157 (211)
T 3e57_A 78 GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVSRVHLG 157 (211)
T ss_dssp TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHHHTEEE
T ss_pred CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCCeEEEE
Confidence 689999998743 2378999 9999999998 59999999999999998877777765442
Q ss_pred ------------------CeeEeeHHHHHHH
Q 016616 291 ------------------DARWHSREDVKKA 303 (386)
Q Consensus 291 ------------------~a~W~~~eel~~~ 303 (386)
+++|++.+++.++
T Consensus 158 ~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~ 188 (211)
T 3e57_A 158 ALFLGRGKFFSVKEKDLFEWELIKLEELEKF 188 (211)
T ss_dssp EEEEEEEEEEEESCTTTCEEEEEEHHHHHHH
T ss_pred EEEEEEeCCceeCCCCeEEEEEEEHHHHHHh
Confidence 6889999999885
No 63
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.32 E-value=3.7e-13 Score=111.83 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=46.4
Q ss_pred EEEeCCCCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEE
Q 016616 227 LVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283 (386)
Q Consensus 227 lv~~~~~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~ 283 (386)
+|++. ++++||.||.. ...|+|++|||++++||++++|+.||++||||+.+..+.+
T Consensus 10 ii~~~-~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~ 67 (129)
T 1mut_A 10 IIRNE-NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL 67 (129)
T ss_dssp ECEET-TTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECC
T ss_pred EEEec-CCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceE
Confidence 34454 68999998874 3468999999999999999999999999999998754433
No 64
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.29 E-value=7.3e-12 Score=110.42 Aligned_cols=63 Identities=33% Similarity=0.527 Sum_probs=52.9
Q ss_pred CcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEee
Q 016616 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (386)
Q Consensus 221 ~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (386)
.++|.+++++. +++|||+++.. .|.|.+|||++++|||+++||+||++||||+++..+.+++.
T Consensus 8 ~~~v~~~i~~~-~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~ 70 (164)
T 2kdv_A 8 RPNVGIVICNR-QGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAS 70 (164)
T ss_dssp EEEEEEEEECT-TSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred CcEEEEEEEcc-CCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEE
Confidence 34666667765 57999998874 68999999999999999999999999999998877666554
No 65
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.23 E-value=1.4e-11 Score=106.65 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=44.4
Q ss_pred EEEEEEeCC--CCEEEEEEecc--CCCCceEeeeeecCCCCCHH-HHHHHHHHHHhC-Ceec
Q 016616 224 VIMLVIDRE--NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLE-EAVRRETWEETG-IEVG 279 (386)
Q Consensus 224 Vivlv~~~~--~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtle-eAa~REv~EEtG-l~v~ 279 (386)
++++|.+.. +++|||.||.. ...|+|++|||.+++||+++ +|++||++|||| +.+.
T Consensus 22 ~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~ 83 (155)
T 1x51_A 22 ATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPAT 83 (155)
T ss_dssp EEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCST
T ss_pred EEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCccee
Confidence 334444432 47899998874 34689999999999999997 999999999999 7553
No 66
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.20 E-value=9.9e-11 Score=115.95 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 016616 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281 (386)
Q Consensus 232 ~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v 281 (386)
++.+|||+++.. .|.|++|||+||+|||+++||+||++||||+++...
T Consensus 36 ~~~~vLLv~r~~--~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~ 83 (364)
T 3fjy_A 36 DSIEVCIVHRPK--YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG 83 (364)
T ss_dssp TTEEEEEEEETT--TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEE
T ss_pred CceEEEEEEcCC--CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeec
Confidence 356899998853 489999999999999999999999999999987443
No 67
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.11 E-value=1.8e-10 Score=108.22 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCCEEEEEEecc---CCCCceEee-eeecCCC------CC---HHHHHHHHHHHHhCCeec
Q 016616 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPG------ES---LEEAVRRETWEETGIEVG 279 (386)
Q Consensus 223 ~Vivlv~~~~~~~vLL~rr~~---~~~g~wslP-gG~Ve~G------Et---leeAa~REv~EEtGl~v~ 279 (386)
++.++|++. +++|||+||.. ..+|+|++| ||++++| |+ +++||+||++|||||.+.
T Consensus 61 av~v~v~~~-~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~ 129 (235)
T 2dho_A 61 AFSVFLFNT-ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLE 129 (235)
T ss_dssp EEEEEEECT-TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEEcC-CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence 555666765 57899998863 357999998 5999999 88 599999999999999753
No 68
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=109.03 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.3
Q ss_pred cEEEEEEEeCCCCEEEEEEecc---CCCCceEeee-eecCCC------CCH---HHHHHHHHHHHhCCeec
Q 016616 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIA-GFIEPG------ESL---EEAVRRETWEETGIEVG 279 (386)
Q Consensus 222 p~Vivlv~~~~~~~vLL~rr~~---~~~g~wslPg-G~Ve~G------Etl---eeAa~REv~EEtGl~v~ 279 (386)
.++.++|++. +++|||+||.. ..+|+|++|+ |++++| |++ ++||+||++|||||.+.
T Consensus 71 ~av~v~v~~~-~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~ 140 (246)
T 2pny_A 71 RAFSVVLFNT-KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGE 140 (246)
T ss_dssp EEEEEEEECT-TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTT
T ss_pred EEEEEEEEeC-CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence 3556667765 56899998863 3579999985 999999 886 99999999999999753
No 69
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.01 E-value=6.6e-10 Score=107.59 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=38.0
Q ss_pred EEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCe
Q 016616 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277 (386)
Q Consensus 235 ~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~ 277 (386)
++||+++.. .|.|++|||+||+||++++||+||++||||+.
T Consensus 140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~ 180 (292)
T 1q33_A 140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNS 180 (292)
T ss_dssp EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence 799998874 48999999999999999999999999999987
No 70
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.01 E-value=1.3e-10 Score=107.07 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=49.7
Q ss_pred CCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCC-CHHHHHHHHHHHHhCCeecc
Q 016616 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGE 280 (386)
Q Consensus 212 C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GE-tleeAa~REv~EEtGl~v~~ 280 (386)
|....|.. ..++++++++. ++++||.+|. .|.|++|||+||+|| |+++||+||++||||+.+..
T Consensus 36 ~~~~l~~~-~~~vv~~i~~~-~~~vLl~~r~---~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~ 100 (212)
T 1u20_A 36 CHALLHAP-SQAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALAT 100 (212)
T ss_dssp EEEEEEEE-CCCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGG
T ss_pred ceEEEeCC-CceEEEEEEec-CCEEEEEEeC---CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccc
Confidence 33444443 34455555554 6789998873 689999999999999 99999999999999998764
No 71
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.93 E-value=3.7e-10 Score=104.84 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=45.4
Q ss_pred CCceecCCCCcEEE-E-EEEeCCCCEEEEEEeccCCCCceEeeeeecCCCC-CHHHHHHHHHHHHhCCeec
Q 016616 212 CKKRIYPRVDPVVI-M-LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVG 279 (386)
Q Consensus 212 C~~~~ypr~~p~Vi-v-lv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GE-tleeAa~REv~EEtGl~v~ 279 (386)
|+...|+ ..|.++ + +..+ + ++||..+. .|.|++|||+||+|| |+++||+||++||||+++.
T Consensus 45 ~~~~~~~-~~~~~v~~vi~~~--~-~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~ 108 (217)
T 2xsq_A 45 CHALLYA-PDPGMLFGRIPLR--Y-AILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA 108 (217)
T ss_dssp EEEEEEE-EEEEEETTTEEEE--E-EEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred eeeEEEc-CCCcEEEEEEEee--C-cEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 5667776 445444 2 2333 2 45554443 589999999999999 9999999999999999876
No 72
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=98.93 E-value=5.2e-10 Score=111.51 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=57.3
Q ss_pred EEEEEEeCCCCEEEEEEecc--CCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEee---------------
Q 016616 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS--------------- 286 (386)
Q Consensus 224 Vivlv~~~~~~~vLL~rr~~--~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s--------------- 286 (386)
+.++|.+. +++|||.||.. ...|+|++|||.+|+| |+++|+.||++||||+++....+++.
T Consensus 243 ~~~vi~~~-~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~ 320 (369)
T 3fsp_A 243 AVAVLADD-EGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF 320 (369)
T ss_dssp EEEEEECS-SSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEE
T ss_pred EEEEEEeC-CCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEE
Confidence 33444543 78999999874 4579999999999999 99999999999999997643221111
Q ss_pred ---ee-----CCCeeEeeHHHHHH
Q 016616 287 ---QP-----WPDARWHSREDVKK 302 (386)
Q Consensus 287 ---~p-----~p~a~W~~~eel~~ 302 (386)
.. ..+++|++.+++.+
T Consensus 321 ~~~~~~~~~e~~~~~Wv~~~el~~ 344 (369)
T 3fsp_A 321 PGRLVHGGPVEEPYRLAPEDELKA 344 (369)
T ss_dssp EEEECCSSCCCTTEEEEEGGGGGG
T ss_pred EEEEcCCCCCccccEEeeHHHhhh
Confidence 00 01789999999876
No 73
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=98.86 E-value=8.5e-09 Score=100.38 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=49.2
Q ss_pred CCCCcEEEEEEEeCCC--CEEEEEEecc---CCCCce-EeeeeecCCCCCHHHHHHHHHHHHhCCee
Q 016616 218 PRVDPVVIMLVIDREN--DRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEV 278 (386)
Q Consensus 218 pr~~p~Vivlv~~~~~--~~vLL~rr~~---~~~g~w-slPgG~Ve~GEtleeAa~REv~EEtGl~v 278 (386)
.-...+|.+.+++.++ .++||+||+. .++|+| .+++|++++||++++||+||++||+||.+
T Consensus 115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~ 181 (300)
T 3dup_A 115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPE 181 (300)
T ss_dssp TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCH
T ss_pred ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCCh
Confidence 3333466676766532 2899999983 478999 59999999999999999999999999975
No 74
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.70 E-value=9.3e-09 Score=96.61 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=44.5
Q ss_pred EEEEEEEeCCC--CEEEEEEecc---CCCCceEeeeeecCCCCC--------------------HHHHHHHHHHHHhCCe
Q 016616 223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSCIAGFIEPGES--------------------LEEAVRRETWEETGIE 277 (386)
Q Consensus 223 ~Vivlv~~~~~--~~vLL~rr~~---~~~g~wslPgG~Ve~GEt--------------------leeAa~REv~EEtGl~ 277 (386)
++++++.+..+ .+|||.||.. +.+|.|.+|||.||++|+ +..||+||++|||||.
T Consensus 11 A~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~ 90 (232)
T 3qsj_A 11 ATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWL 90 (232)
T ss_dssp EEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCce
Confidence 34444444323 4899999874 347999999999999987 6999999999999997
Q ss_pred ec
Q 016616 278 VG 279 (386)
Q Consensus 278 v~ 279 (386)
+.
T Consensus 91 l~ 92 (232)
T 3qsj_A 91 LA 92 (232)
T ss_dssp CS
T ss_pred ec
Confidence 63
No 75
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.54 E-value=1e-07 Score=93.64 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=48.4
Q ss_pred CCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHh-CCeeccEEEEeeeeCC-------------------Ce
Q 016616 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET-GIEVGEVVYHTSQPWP-------------------DA 292 (386)
Q Consensus 233 ~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEt-Gl~v~~v~~~~s~p~p-------------------~a 292 (386)
+++|||+ ...| |+||||.++.++ .++++||++||| |+++.....++.+..+ ++
T Consensus 193 ~g~vLL~----~~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~~~~~i~f~~~~~~g~~~e~ 265 (321)
T 3rh7_A 193 QGAVFLA----GNET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKSDGRQNIVYHALASDGAPRQG 265 (321)
T ss_dssp SSCEEEB----CSSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTTTCCEEEEEEEEECSSCCSSS
T ss_pred CCEEEEe----eCCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCCCceEEEEEEEEeCCCCeeee
Confidence 6789998 2357 999988665555 459999999997 9998765555544332 88
Q ss_pred eEeeHHHHHH
Q 016616 293 RWHSREDVKK 302 (386)
Q Consensus 293 ~W~~~eel~~ 302 (386)
+||+.++++.
T Consensus 266 ~~f~~~elp~ 275 (321)
T 3rh7_A 266 RFLRPAELAA 275 (321)
T ss_dssp EEECHHHHTT
T ss_pred EEECHHHCCC
Confidence 9999999987
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.51 E-value=2.4e-08 Score=91.19 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=40.4
Q ss_pred CEEEEEEeccCCCCceEeeeeecCCCC-CHHHHHHHHHHHHhCC-eeccEEEEeeee
Q 016616 234 DRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGI-EVGEVVYHTSQP 288 (386)
Q Consensus 234 ~~vLL~rr~~~~~g~wslPgG~Ve~GE-tleeAa~REv~EEtGl-~v~~v~~~~s~p 288 (386)
..|||+.|. .|.|.+|||+||+|| |+|+|+.||+.||+|+ .+....|+.+..
T Consensus 44 ~~iLmQ~R~---~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~ 97 (214)
T 3kvh_A 44 FSVLMQMRF---DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHL 97 (214)
T ss_dssp EEEEEEEET---TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEE
T ss_pred heEEEeeee---CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEe
Confidence 357777665 599999999999999 9999999999999997 465555555543
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.33 E-value=8.4e-07 Score=81.64 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=36.3
Q ss_pred CEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCC
Q 016616 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276 (386)
Q Consensus 234 ~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl 276 (386)
.+|||.|+. .+.|.+|||.+|+||+.++|++||+.||+|+
T Consensus 73 phVLLlq~~---~~~f~LPGGkle~gE~~~eaL~REL~EELg~ 112 (208)
T 3bho_A 73 PHVLLLQLG---TTFFKLPGGELNPGEDEVEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEE---TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred cEEEEEEcC---CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence 379988874 4699999999999999999999999999995
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.70 E-value=0.00069 Score=48.58 Aligned_cols=33 Identities=21% Similarity=0.590 Sum_probs=29.0
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCceecC
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (386)
+..+|||.||+...+.....+..|+ .|+.++|.
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~--kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACG--KCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECS--SSCCEEEC
T ss_pred EecccCCCCCCceEEecCCCeEECC--CCCCEEEC
Confidence 4579999999998888888899997 69999986
No 79
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.18 E-value=0.037 Score=40.28 Aligned_cols=34 Identities=24% Similarity=0.583 Sum_probs=27.1
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCceecCC
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (386)
+..+|||.||.-+.+.....+..|. .|+.+.|-.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~--kCgyt~~~~ 49 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFKK 49 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEECC
T ss_pred EccccCcCCCCceeEeccCCEEECC--CCCCEEEeC
Confidence 3479999999988776667788997 699887643
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=85.43 E-value=0.51 Score=38.97 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=26.2
Q ss_pred hcCccccCCCCceeccC----CccccccCCCCCceecCC
Q 016616 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIYPR 219 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~ypr 219 (386)
..+|||.||.-|.+..+ ..+..|. .|+++++..
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~~ 39 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIAA 39 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECCS
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEcC
Confidence 46899999999988764 3478897 699988653
No 81
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=77.40 E-value=1 Score=41.97 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=25.5
Q ss_pred HHHHH-hhhhhcCccccCCCC-ceeccCC---ccccccCCCCCce
Q 016616 176 ARALL-EWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKKR 215 (386)
Q Consensus 176 A~~l~-~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~~ 215 (386)
||=|. .|-.++.|||.||.. +...... --..|+ .|..+
T Consensus 23 aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~--~C~Ee 65 (257)
T 4esj_A 23 ARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCN--HCSEE 65 (257)
T ss_dssp HHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECT--TTCCE
T ss_pred ehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccC--Ccchh
Confidence 55554 799999999999994 6555443 246786 58753
No 82
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=74.91 E-value=1.6 Score=37.15 Aligned_cols=39 Identities=23% Similarity=0.536 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCceeccC----CccccccCCCCCcee
Q 016616 172 IAGHARALLEWHNVSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRI 216 (386)
Q Consensus 172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~ 216 (386)
++.+...+. ..+|||.||.-|.+.++ .....|. .|+++.
T Consensus 14 ~~~~~~~~~----~~~FCPeCgNmL~pked~~~~~l~~~Cr--tCgY~~ 56 (133)
T 3qt1_I 14 LVPRGSHMT----TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVE 56 (133)
T ss_dssp --------C----CCCBCTTTCCBCBCCBCTTTCCBCCBCS--SSCCBC
T ss_pred cccCCcccc----CCeeCCCCCCEeeECccCCCceeEEECC--CCCCcE
Confidence 444444443 36999999999988764 3468897 699865
No 83
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.27 E-value=3.6 Score=28.53 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=22.6
Q ss_pred cCccccCCC-CceeccCCccccccCCCCCceecC
Q 016616 186 SRFCGHCGE-KTIPKEAGKLKQCSNASCKKRIYP 218 (386)
Q Consensus 186 ~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~yp 218 (386)
...||.||+ ++......-...|. .||..+-.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~--~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA--KCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES--SSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc--ccCCcccc
Confidence 457999999 77666555568897 69986543
No 84
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=66.42 E-value=2.9 Score=34.80 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=24.2
Q ss_pred hcCccccCCCCceeccC----CccccccCCCCCceec
Q 016616 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIY 217 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~y 217 (386)
..+|||.||.-|.+..+ .....|. .|+++.-
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~--~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECS--SSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECC--cCCCeee
Confidence 35899999999987743 4578897 6998764
No 85
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=63.45 E-value=3.6 Score=30.93 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=28.7
Q ss_pred hhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEE
Q 016616 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVI 225 (386)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Vi 225 (386)
....--||.|++++.....+...+|+ .|+ ..||-.+..-+
T Consensus 5 LL~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPv 44 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDKSKDELICK--GDR-LAFPIKDGIPM 44 (68)
T ss_dssp CEEECBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTEEC
T ss_pred HhhheECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCeee
Confidence 33456799999999987777778897 586 56775554433
No 86
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=62.82 E-value=3.8 Score=30.81 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=29.6
Q ss_pred hhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEE
Q 016616 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (386)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Viv 226 (386)
|....--||.|++++.........+|+ .|+ ..||-.+..-++
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQDKQELWSR--QAK-LAYPIKDGIPYM 45 (68)
T ss_dssp SSSCCCBCSSSCCBCEEETTTTEEEET--TTT-EEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCeeee
Confidence 334456799999999987777778897 586 567755544333
No 87
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=62.19 E-value=3.7 Score=31.04 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.9
Q ss_pred hhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEE
Q 016616 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (386)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Viv 226 (386)
|....--||.|++++.....+-..+|+ .|+ ..||-.+..-++
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQRAQAELVCN--ADR-LAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCBCTTTCCBEEEETTTTEEEET--TTT-EEEEEETTEECC
T ss_pred HHhhheECCCCCCcCEEeCCCCEEEcC--CCC-ceecCCCCeeee
Confidence 334456799999999987777778897 586 667755544443
No 88
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=61.50 E-value=2.7 Score=32.65 Aligned_cols=13 Identities=62% Similarity=1.428 Sum_probs=10.8
Q ss_pred cCccccCCCCcee
Q 016616 186 SRFCGHCGEKTIP 198 (386)
Q Consensus 186 ~~fC~~CG~~~~~ 198 (386)
-.|||.||.++-.
T Consensus 30 k~FCp~CGn~TL~ 42 (79)
T 2con_A 30 RVFCGHCGNKTLK 42 (79)
T ss_dssp CCSCSSSCCSCCE
T ss_pred cccccccCcccce
Confidence 4899999998753
No 89
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=59.09 E-value=6.6 Score=29.57 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=30.2
Q ss_pred hhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEE
Q 016616 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (386)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Viv 226 (386)
|....--||.|++++.....+....|+ .|+ ..||-.+..-++
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSADKTELISK--GAG-LAYPIRDGIPVM 45 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTTSSEEEET--TTT-EEEEEETTEECC
T ss_pred HHHhheeCCCCCCcCeEeCCCCEEEcC--CCC-cEecCcCCeeee
Confidence 445566899999999987777778897 586 567755544433
No 90
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=58.24 E-value=6.3 Score=34.76 Aligned_cols=33 Identities=12% Similarity=0.567 Sum_probs=26.1
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCceecCCCC
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVD 221 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~ 221 (386)
-.-+|+.||.+|.+.. ..+.|+ .|+.....+..
T Consensus 139 v~a~~~~~g~~m~~~~--~~~~cp--~~g~~e~RKva 171 (179)
T 3m7n_A 139 LRALCSNCKTEMVREG--DILKCP--ECGRVEKRKIS 171 (179)
T ss_dssp EECBCTTTCCBCEECS--SSEECS--SSCCEECCCBC
T ss_pred EEecccccCCceEECC--CEEECC--CCCCEEEEecc
Confidence 3578999999998865 789997 69988766543
No 91
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=57.75 E-value=4.1 Score=36.67 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.0
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCceec
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (386)
+.++.||+||....+..-..+..|. .|+..++
T Consensus 111 ~~~~~Cp~Cg~g~fma~h~dR~~CG--kC~~t~~ 142 (189)
T 2xzm_9 111 LQQKGCPKCGPGIFMAKHYDRHYCG--KCHLTLK 142 (189)
T ss_dssp ECSEECSTTCSSCEEEECSSCEEET--TTCCCBC
T ss_pred EccccCCccCCCccccCccCCCccC--CceeEEE
Confidence 3469999999999888777788997 6987653
No 92
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=56.65 E-value=6 Score=28.52 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=27.8
Q ss_pred hhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcE
Q 016616 181 EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (386)
Q Consensus 181 ~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~ 223 (386)
.|....--||.|.+++.... ....|+++.|+ ..||-.+..
T Consensus 5 ~~lL~iL~CP~c~~~L~~~~--~~L~C~~~~c~-~~YPI~dGI 44 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEERD--AELICTGQDCG-LAYPVRDGI 44 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEET--TEEEECSSSCC-CEEEEETTE
T ss_pred HHHHhheeCCCCCCcceecC--CEEEcCCcCCC-cEEeeECCE
Confidence 34455668999999988766 45679765686 567755443
No 93
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=56.33 E-value=5.9 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.451 Sum_probs=22.8
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCc-eecCC
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKK-RIYPR 219 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~-~~ypr 219 (386)
-..-|+.||...... .+....|+ .||. +.|..
T Consensus 27 v~Y~C~~CG~~~e~~-~~d~irCp--~CG~RILyK~ 59 (70)
T 1twf_L 27 LKYICAECSSKLSLS-RTDAVRCK--DCGHRILLKA 59 (70)
T ss_dssp CCEECSSSCCEECCC-TTSTTCCS--SSCCCCCBCC
T ss_pred EEEECCCCCCcceeC-CCCCccCC--CCCceEeEec
Confidence 345699999997655 44566797 6998 55554
No 94
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.98 E-value=3.7 Score=32.00 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=6.7
Q ss_pred ccccCCCCcee
Q 016616 188 FCGHCGEKTIP 198 (386)
Q Consensus 188 fC~~CG~~~~~ 198 (386)
|||.||.++..
T Consensus 33 fCPeCgq~Le~ 43 (81)
T 2jrp_A 33 LCPDCRQPLQV 43 (81)
T ss_dssp ECSSSCSCCCE
T ss_pred cCcchhhHHHH
Confidence 66666666653
No 95
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=54.05 E-value=6.8 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=22.2
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
....||.||+.+....+--...|+ .|+..
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~--~Cg~~ 54 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCS--YCDYK 54 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred ccCcCCCCCCcceeccCCCeEECC--CCCCE
Confidence 456899999987766655577897 69875
No 96
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=51.90 E-value=3 Score=43.97 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=0.4
Q ss_pred cCccccCCCCcee-ccCCccccccCC-CCCceecC
Q 016616 186 SRFCGHCGEKTIP-KEAGKLKQCSNA-SCKKRIYP 218 (386)
Q Consensus 186 ~~fC~~CG~~~~~-~~~g~~~~C~~~-~C~~~~yp 218 (386)
-..||.||+++.. .+++....|+|+ .|....-.
T Consensus 415 P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~~~ 449 (615)
T 3sgi_A 415 PTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRE 449 (615)
T ss_dssp C----------------------------------
T ss_pred CCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHHHH
Confidence 3679999999987 567778899985 69765433
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=51.03 E-value=7.6 Score=37.46 Aligned_cols=35 Identities=29% Similarity=0.733 Sum_probs=23.1
Q ss_pred hcCccccCCCCcee---c----cCC-ccccccCCCCCce-ecCCCC
Q 016616 185 VSRFCGHCGEKTIP---K----EAG-KLKQCSNASCKKR-IYPRVD 221 (386)
Q Consensus 185 ~~~fC~~CG~~~~~---~----~~g-~~~~C~~~~C~~~-~ypr~~ 221 (386)
...|||.||++-.. . ..| +...|. -|+.+ +|+|..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs--~C~t~W~~~R~~ 224 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCS--LCACEWHYVRIK 224 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEET--TTCCEEECCTTS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeC--CCCCEEeecCcC
Confidence 47899999998543 1 122 456675 69887 566654
No 98
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.81 E-value=9.2 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=21.4
Q ss_pred hhhcCccccCCC-CceeccCCccccccCCCCCcee
Q 016616 183 HNVSRFCGHCGE-KTIPKEAGKLKQCSNASCKKRI 216 (386)
Q Consensus 183 ~~~~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~ 216 (386)
......||.||. .+......-...|. .||...
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~--~CGlVl 40 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICP--ECGLVV 40 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECT--TTCCEE
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeC--CCCCEE
Confidence 344567999998 55544444467897 698754
No 99
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=50.68 E-value=6.8 Score=29.33 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=31.2
Q ss_pred hhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEE
Q 016616 181 EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (386)
Q Consensus 181 ~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Viv 226 (386)
.|....--||.|.+++.....+....|+ .|+ ..||-.+..-++
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~~g~LvC~--~c~-~~YPI~dGIPvm 47 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLESEQLLVNE--RLN-LAYRIDDGIPVL 47 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTEECC
T ss_pred HHHHHHhCCCCCCCcCeEeCCCCEEEcC--CCC-ccccCCCCEeee
Confidence 4555667899999999987777778897 586 667755544333
No 100
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=50.51 E-value=2 Score=39.73 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEe
Q 016616 172 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSC 251 (386)
Q Consensus 172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wsl 251 (386)
+..-|.+|..=..+-++|..||.-+. ......|.+ |+-+..++++|.+. .-++-..+.+.+.|.|-+
T Consensus 40 ~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~d--------~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~YhV 106 (228)
T 1vdd_A 40 IERLASALLEAKRDLHVCPICFNITD---AEKCDVCAD--------PSRDQRTICVVEEP--GDVIALERSGEYRGLYHV 106 (228)
T ss_dssp HHHHHHHHHHHHHHCEECSSSCCEES---SSSCHHHHC--------SSSCTTEEEEESSH--HHHHHTTTTSSCCSEEEE
T ss_pred HHHHHHHHHHHHhcCeEcCCCCCCcC---CCcCCCCCC--------CCcCCCeEEEECCH--HHHHHHHHhcccceEEEe
Confidence 34458899999999999999998753 333444432 23344566666543 234444555667899999
Q ss_pred eeeecCC--CCCHHHHHHHHHHHHh
Q 016616 252 IAGFIEP--GESLEEAVRRETWEET 274 (386)
Q Consensus 252 PgG~Ve~--GEtleeAa~REv~EEt 274 (386)
.+|.+.| |-.+++--..++.+..
T Consensus 107 LgG~lSPldGigP~dL~i~~L~~Rl 131 (228)
T 1vdd_A 107 LHGVLSPMNGVGPDKLHIKPLLPRV 131 (228)
T ss_dssp CSSCCBGGGTBCTTTSTTGGGGGGC
T ss_pred cCCccCcccCCChhhcCHHHHHHHh
Confidence 9998876 3333333333343333
No 101
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=48.00 E-value=6.8 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=24.2
Q ss_pred cCccccCCCCceeccCCccccccCC-CCCc
Q 016616 186 SRFCGHCGEKTIPKEAGKLKQCSNA-SCKK 214 (386)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~-~C~~ 214 (386)
-.+||.||+++...+++...+|+++ .|..
T Consensus 405 P~~CP~Cgs~~~~~~~~~~~rC~n~~~Cpa 434 (586)
T 4glx_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICGA 434 (586)
T ss_dssp CSBCTTTCCBEECCTTCSCCEESCGGGCHH
T ss_pred CCcCCCCCCchhhhhcccccEeCCCcCcHH
Confidence 3689999999998888888999874 5864
No 102
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=47.84 E-value=1.7 Score=39.84 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcEEEEEEEeCCCCEEEEEEeccCCCCceEe
Q 016616 172 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSC 251 (386)
Q Consensus 172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wsl 251 (386)
+..-|.+|.+=..+-+||..||.-+. ..-...|.+ |+-+..++++|.+. ..++-..+.+.+.|.|-+
T Consensus 54 ~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~d--------~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~YhV 120 (212)
T 3vdp_A 54 VRSLSQAIIEAKEKLRYCKICFNITD---KEVCDICSD--------ENRDHSTICVVSHP--MDVVAMEKVKEYKGVYHV 120 (212)
T ss_dssp HHHHHHHHHHHHHHCEECTTTCCEES---SSSCHHHHC--------TTSEEEEEEEESSH--HHHHHHHTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCCC---CCcCCCCCC--------CCCCCCEEEEECCH--HHHHHHHhhCccceEEEe
Confidence 34458889999999999999998754 233444442 33456677777553 234445555667899999
Q ss_pred eeeecCC--CCCHHHHHHHHHHHHh
Q 016616 252 IAGFIEP--GESLEEAVRRETWEET 274 (386)
Q Consensus 252 PgG~Ve~--GEtleeAa~REv~EEt 274 (386)
.+|.+.| |-.+++--..++.+-.
T Consensus 121 LgG~iSPldGigP~~L~i~~L~~Ri 145 (212)
T 3vdp_A 121 LHGVISPIEGVGPEDIRIKELLERV 145 (212)
T ss_dssp CSSCCBTTTTBCGGGTTHHHHHHHH
T ss_pred cCCccCccCCCCccccCHHHHHHHH
Confidence 9999987 4455555555554443
No 103
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=47.42 E-value=7.1 Score=41.63 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=23.7
Q ss_pred cCccccCCCCceeccCCccccccC-CCCCc
Q 016616 186 SRFCGHCGEKTIPKEAGKLKQCSN-ASCKK 214 (386)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~-~~C~~ 214 (386)
-..||.||+++...+++...+|++ ..|..
T Consensus 405 P~~CP~Cgs~l~~~~~~~~~rC~n~~~Cpa 434 (671)
T 2owo_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICGA 434 (671)
T ss_dssp CSBCTTTCCBEEECTTCSCEEECCGGGCHH
T ss_pred CCCCCCCCCEeEEecCCEEEECCCCCCCHH
Confidence 468999999998877778888995 46874
No 104
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=47.31 E-value=7.7 Score=29.42 Aligned_cols=25 Identities=28% Similarity=0.864 Sum_probs=20.8
Q ss_pred ccccCCCCceeccCCccccccCCCCCcee
Q 016616 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (386)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (386)
-|| ||.......+.....|+ ||..+
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~---CG~~~ 30 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV---CGRTV 30 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET---TTEEE
T ss_pred ECC-CCCEEEEcCCCcEEECC---CCCee
Confidence 499 99999988888888894 98764
No 105
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=45.27 E-value=6.8 Score=41.70 Aligned_cols=27 Identities=30% Similarity=0.818 Sum_probs=21.7
Q ss_pred cCccccCCCCceeccCCccccccCCCCCc
Q 016616 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (386)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (386)
-..||.||+++ .+++...+|+++.|..
T Consensus 403 P~~CP~Cgs~l--~~g~~~~~C~n~~Cpa 429 (667)
T 1dgs_A 403 PEACPECGHRL--VKEGKVHRCPNPLCPA 429 (667)
T ss_dssp CSBCTTTCCBC--EEETTEEECCCTTCGG
T ss_pred CCCCCCCCCCc--cCCCeEEEeCCCCChh
Confidence 46899999999 5556678899877975
No 106
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=44.55 E-value=10 Score=32.62 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=27.4
Q ss_pred hhhcCcccc--CCCCceeccCCccccccCCCCCceec
Q 016616 183 HNVSRFCGH--CGEKTIPKEAGKLKQCSNASCKKRIY 217 (386)
Q Consensus 183 ~~~~~fC~~--CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (386)
.+..+.||+ ||.-..+..-..+..|. .|+..++
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cg--kc~~t~~ 149 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCG--KCHSVYK 149 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEES--SSSSCCE
T ss_pred EECcCcCCCccCCCceEecccCCCcccC--CCceEEE
Confidence 345789999 99999999888899997 6987653
No 107
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=43.92 E-value=11 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=17.3
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
+.+.|+.||.-+. +..|+ .||..
T Consensus 5 ~mr~C~~CgvYTL------k~~CP--~CG~~ 27 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICP--KCGEK 27 (60)
T ss_dssp CCEECTTTCCEES------SSBCS--SSCSB
T ss_pred hceeCCCCCCEec------cccCc--CCCCc
Confidence 5688999987765 66786 58864
No 108
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=42.96 E-value=8.7 Score=30.87 Aligned_cols=27 Identities=22% Similarity=0.625 Sum_probs=20.6
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCce
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
.+|..|++||...... .+..|. .||+.
T Consensus 14 KtH~lCrRCG~~sfH~---qK~~Cg--kCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL---QKSTCG--KCGYP 40 (97)
T ss_dssp CCEECCTTTCSSCEET---TSCCBT--TTCTT
T ss_pred CCCCcCCCCCCccCcC---ccccCc--ccCCc
Confidence 4578999999998854 466786 68864
No 109
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.76 E-value=14 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=21.0
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCce
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
.+.+|||.|+..+..........|+ .|+..
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~--~C~~~ 52 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCP--QCHQT 52 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECT--TTCCE
T ss_pred CCEeECcCCCchheecCCCCceEeC--CCCCc
Confidence 4557899999988655555566786 57753
No 110
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.41 E-value=20 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.759 Sum_probs=21.7
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCcee
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (386)
...-|+.||...... .+...+|+ .||...
T Consensus 20 v~Y~C~~Cg~~~~l~-~~~~iRC~--~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-AKEVIRCR--ECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCC-SSSCCCCS--SSCCCC
T ss_pred eEEECCCCCCeeecC-CCCceECC--CCCcEE
Confidence 456799999998755 45667897 698753
No 111
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=36.08 E-value=6.2 Score=28.97 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=15.1
Q ss_pred hcCccccCCCCceeccCCcccccc
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCS 208 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~ 208 (386)
..+||++||.++..........|.
T Consensus 32 k~r~CaRCGg~v~lr~~k~~WvC~ 55 (62)
T 2a20_A 32 QTKFCARCGGRVSLRSNKVMWVCN 55 (62)
T ss_dssp CCEECTTSEEEEESSTTCEEEEEH
T ss_pred CCeeecccCCEeeecCCeEEEEeh
Confidence 347788888877665555455553
No 112
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=34.14 E-value=21 Score=29.59 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=21.5
Q ss_pred hhhcCccccCCCCceeccCCccccccCCCCCce
Q 016616 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
.....+||.||+......+--...|. .|+..
T Consensus 57 q~akytCPfCGk~~vKR~avGIW~C~--~Cgk~ 87 (116)
T 3cc2_Z 57 MNEDHACPNCGEDRVDRQGTGIWQCS--YCDYK 87 (116)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred hccCCcCCCCCCceeEecCceeEECC--CCCCE
Confidence 45568999999865544444455797 69875
No 113
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.03 E-value=20 Score=33.53 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=18.0
Q ss_pred CccccCCCCceeccCCc--cccccCCCCCc
Q 016616 187 RFCGHCGEKTIPKEAGK--LKQCSNASCKK 214 (386)
Q Consensus 187 ~fC~~CG~~~~~~~~g~--~~~C~~~~C~~ 214 (386)
+-|++||.+.....-+- --.|+ .|..
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP--TCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT--TTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 56999999987654433 44564 7975
No 114
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=30.93 E-value=19 Score=33.53 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=18.9
Q ss_pred hhhcCccccCCCCceeccCCc--cccccCCCCC
Q 016616 183 HNVSRFCGHCGEKTIPKEAGK--LKQCSNASCK 213 (386)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~--~~~C~~~~C~ 213 (386)
.+.-+-|++||.+.....-+- --.|+ .|.
T Consensus 231 gR~g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 261 (262)
T 1k3x_A 231 HRDGEPCERCGSIIEKTTLSSRPFYWCP--GCQ 261 (262)
T ss_dssp TCTTSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCcCCCCCCCCEeEEEEECCCCeEECC--CCC
Confidence 333457999999987654333 44565 786
No 115
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.83 E-value=23 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=24.1
Q ss_pred cCccccCCCCceeccCCccccccCCCCCceecCC
Q 016616 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (386)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (386)
..-||.|++.....+ |....|+ .|+.++-+.
T Consensus 27 lP~CP~C~seytYeD-g~l~vCP--eC~hEW~~~ 57 (138)
T 2akl_A 27 LPPCPQCNSEYTYED-GALLVCP--ECAHEWSPN 57 (138)
T ss_dssp SCCCTTTCCCCCEEC-SSSEEET--TTTEEECTT
T ss_pred CCCCCCCCCcceEec-CCeEECC--ccccccCCc
Confidence 478999999987654 4568897 799998543
No 116
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=30.81 E-value=22 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=16.4
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCce
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
.+.+.|+.||.=|. +..|+ .||..
T Consensus 3 s~mr~C~~Cg~YTL------k~~CP--~CG~~ 26 (60)
T 2aus_D 3 FRIRKCPKCGRYTL------KETCP--VCGEK 26 (60)
T ss_dssp -CCEECTTTCCEES------SSBCT--TTCSB
T ss_pred ccceECCCCCCEEc------cccCc--CCCCc
Confidence 35688999987664 55686 57764
No 117
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=29.70 E-value=21 Score=33.45 Aligned_cols=26 Identities=19% Similarity=0.597 Sum_probs=17.8
Q ss_pred CccccCCCCceeccCCc--cccccCCCCCc
Q 016616 187 RFCGHCGEKTIPKEAGK--LKQCSNASCKK 214 (386)
Q Consensus 187 ~fC~~CG~~~~~~~~g~--~~~C~~~~C~~ 214 (386)
+-|++||.+.....-+- --.|+ .|..
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP--VCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT--TTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 56999999987654333 34465 7874
No 118
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.51 E-value=21 Score=33.41 Aligned_cols=25 Identities=20% Similarity=0.614 Sum_probs=17.1
Q ss_pred CccccCCCCceeccCCc--cccccCCCCC
Q 016616 187 RFCGHCGEKTIPKEAGK--LKQCSNASCK 213 (386)
Q Consensus 187 ~fC~~CG~~~~~~~~g~--~~~C~~~~C~ 213 (386)
+-|++||.+.....-+- --.|+ .|.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR--QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCC
Confidence 56999999987654333 44565 786
No 119
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.36 E-value=21 Score=33.56 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=18.1
Q ss_pred hcCccccCCCCceeccC-C-ccccccCCCCC
Q 016616 185 VSRFCGHCGEKTIPKEA-G-KLKQCSNASCK 213 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~-g-~~~~C~~~~C~ 213 (386)
.-+-|++||.+.....- | .--.|+ .|.
T Consensus 244 ~g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 272 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVVAGRGTHYCP--RCQ 272 (273)
T ss_dssp TTSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CcCCCCCCCCeEEEEEECCCCeEECC--CCC
Confidence 33689999999876443 3 244565 786
No 120
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=28.53 E-value=7.2 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.0
Q ss_pred hcCccccCCCCceeccCCc-cccccCCCCCc
Q 016616 185 VSRFCGHCGEKTIPKEAGK-LKQCSNASCKK 214 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~-~~~C~~~~C~~ 214 (386)
....|..||.++.....++ ++.|.. +|..
T Consensus 17 ~~~~C~~CG~~i~~~~~~r~krFCS~-sCR~ 46 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQFRGSKRFCSM-TCAK 46 (49)
T ss_dssp SEEECTTTCCEEEGGGCTTTSSSCSH-HHHH
T ss_pred CCCcChhccCccccccCCCCCccCCH-HHHh
Confidence 3467999999998765554 688973 5753
No 121
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.60 E-value=60 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=21.5
Q ss_pred hhhcCccccCCCCceeccCCccccccCCCCCce
Q 016616 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
......||.||+......+--...|. .|+..
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 54 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCG--HCGYK 54 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECC--CCCcE
Confidence 45567899999865555544456686 69876
No 122
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=27.37 E-value=41 Score=25.49 Aligned_cols=29 Identities=38% Similarity=0.775 Sum_probs=20.6
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
....||.||+......+--...|. .|+..
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 53 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCS--CCKKT 53 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCS--SSCCC
T ss_pred cCccCCCCCCceeEecCCCeEECC--CCCCE
Confidence 346799999887666555556686 68764
No 123
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.04 E-value=30 Score=27.52 Aligned_cols=27 Identities=30% Similarity=0.726 Sum_probs=19.5
Q ss_pred CccccCCCCceeccCCccccccCCCCCce
Q 016616 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
..||.||+......+--...|. .|+..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~--~Cg~~ 63 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCK--DCGKV 63 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECS--SSCCE
T ss_pred ccCcccCCCeeEecCcceEEcC--CCCCE
Confidence 4899999997666554456686 68764
No 124
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.95 E-value=41 Score=23.46 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=22.2
Q ss_pred ccccCCCCceeccCCc--cccccCCCCCceecCCCCc
Q 016616 188 FCGHCGEKTIPKEAGK--LKQCSNASCKKRIYPRVDP 222 (386)
Q Consensus 188 fC~~CG~~~~~~~~g~--~~~C~~~~C~~~~ypr~~p 222 (386)
-|.+||......+-.. --.|+ -||+..+-.+.+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCp--yCGyrii~KvR~ 39 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCP--YCGYKIIFMVRK 39 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCT--TTCCSCEECCCC
T ss_pred EeeccCCCccHHHHhhCCCcccC--ccCcEEEEEecC
Confidence 5999999987655432 34586 599876654443
No 125
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.82 E-value=31 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=22.4
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCc
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (386)
.+.+-||.|+.+.+..++=..+.|..+.|+.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~ 34 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKA 34 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGS
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCC
Confidence 3568899999999887766677776333654
No 126
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.21 E-value=37 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=15.3
Q ss_pred HHhhhhhcCccccCCCCceec
Q 016616 179 LLEWHNVSRFCGHCGEKTIPK 199 (386)
Q Consensus 179 l~~W~~~~~fC~~CG~~~~~~ 199 (386)
+..|......||.|..++...
T Consensus 53 i~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 53 VDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp HHHHHHHCSSCTTTCCCCCCC
T ss_pred HHHHHHcCCcCcCcCCcCCCC
Confidence 445667778899998877643
No 127
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=24.06 E-value=17 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.9
Q ss_pred hcCccccCCCCceec
Q 016616 185 VSRFCGHCGEKTIPK 199 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~ 199 (386)
++.||+.||.++...
T Consensus 66 ~r~FC~~CGs~l~~~ 80 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQ 80 (118)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred eeEECCCCCccccCc
Confidence 467999999988643
No 128
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.10 E-value=35 Score=24.42 Aligned_cols=23 Identities=9% Similarity=-0.137 Sum_probs=17.7
Q ss_pred HHHHhhhhhcCccccCCCCceec
Q 016616 177 RALLEWHNVSRFCGHCGEKTIPK 199 (386)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~~ 199 (386)
.++..|..++..||.+|.++...
T Consensus 29 ~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 29 SLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp HHHHHHHHHHSBCTTTCCBCCGG
T ss_pred HHHHHHHHhCCCCcCCcCCCChh
Confidence 35677777777899999998643
No 129
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=23.06 E-value=28 Score=25.25 Aligned_cols=26 Identities=38% Similarity=0.723 Sum_probs=19.9
Q ss_pred hhcCccccCCCCceeccCCccccccCCCCCc
Q 016616 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (386)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (386)
.+|-.|-+||......+ +..|. +||+
T Consensus 15 ktH~~CrRCG~~syH~q---K~~Ca--~CGy 40 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHTK---KKVCS--SCGF 40 (57)
T ss_dssp CCEEECTTTCSEEEETT---TTEET--TTCT
T ss_pred CccccccccCChhhhcc---ccccc--cccC
Confidence 56788999999987765 56676 5875
No 130
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.00 E-value=41 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.601 Sum_probs=20.8
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
....||.||+......+--...|. .|+..
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~--kCg~~ 62 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQ--KCGAT 62 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEET--TTCCE
T ss_pred cccCCCCCCCceeEecCcCeEEcC--CCCCE
Confidence 446799999997666554455686 68764
No 131
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=22.81 E-value=41 Score=26.73 Aligned_cols=29 Identities=38% Similarity=0.775 Sum_probs=20.3
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
....||.||+......+--...|. .|+..
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~--~C~~~ 63 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCS--CCKKT 63 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECT--TTCCE
T ss_pred cCCcCCCCCCceeeecccceEEcC--CCCCE
Confidence 456899999887665554455686 68764
No 132
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.50 E-value=30 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=20.0
Q ss_pred hcCccccCCCCceeccCCccccccCCCCCce
Q 016616 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (386)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (386)
....||.||+......+--...|. .|+..
T Consensus 35 aky~CpfCgk~~vKR~a~GIW~C~--kCg~~ 63 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGIWKCK--PCKKI 63 (103)
T ss_dssp SCEECTTTCCEEEEEEETTEEEET--TTTEE
T ss_pred cCCCCCCCCCceeeecCcceEEcC--CCCCE
Confidence 446799999887665554455686 68653
No 133
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.26 E-value=39 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=20.4
Q ss_pred hhcCccccCCCC---ceeccCCccccccCCCCCcee
Q 016616 184 NVSRFCGHCGEK---TIPKEAGKLKQCSNASCKKRI 216 (386)
Q Consensus 184 ~~~~fC~~CG~~---~~~~~~g~~~~C~~~~C~~~~ 216 (386)
....+||.||+. +......--..|. .||.+.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCs--dCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCA--LCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEET--TTCBBC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEc--CCCCCc
Confidence 445689999983 4443344566797 698754
No 134
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.17 E-value=40 Score=21.87 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=17.6
Q ss_pred ccccCCCCcee---ccCCccccccCCCCCcee
Q 016616 188 FCGHCGEKTIP---KEAGKLKQCSNASCKKRI 216 (386)
Q Consensus 188 fC~~CG~~~~~---~~~g~~~~C~~~~C~~~~ 216 (386)
.|+.||.|=.. ........|. .||...
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~--aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM--ACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE--TTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh--cCCCcc
Confidence 49999998332 2334566786 698764
No 135
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.06 E-value=21 Score=27.83 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=24.3
Q ss_pred hhhcCccccCCCCceec---------c----------------CCccccccCCCCCceecCCCCc
Q 016616 183 HNVSRFCGHCGEKTIPK---------E----------------AGKLKQCSNASCKKRIYPRVDP 222 (386)
Q Consensus 183 ~~~~~fC~~CG~~~~~~---------~----------------~g~~~~C~~~~C~~~~ypr~~p 222 (386)
|...--||.||+++.-. + .+....|| .||.+.|.+.-|
T Consensus 5 ~~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEEFyG~~Lp 67 (95)
T 2k5c_A 5 HHHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEEFYGKTLP 67 (95)
T ss_dssp ---CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCEEETTSSC
T ss_pred ccccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHHHhcccCC
Confidence 34456799999986421 0 12355686 799999988755
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.62 E-value=32 Score=27.69 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=8.9
Q ss_pred CccccCCCCceec
Q 016616 187 RFCGHCGEKTIPK 199 (386)
Q Consensus 187 ~fC~~CG~~~~~~ 199 (386)
..||.|..++...
T Consensus 33 ~~CP~Cq~eL~~~ 45 (101)
T 2jne_A 33 LHCPQCQHVLDQD 45 (101)
T ss_dssp CBCSSSCSBEEEE
T ss_pred ccCccCCCcceec
Confidence 5777777777653
Done!