BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016618
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
Length = 454
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 245/372 (65%), Gaps = 31/372 (8%)
Query: 15 IVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLR 74
IV N RFAGKSKEEAAAI IQ+ FRG+LARR + +RG RLKLLMEG VV+RQAA TL+
Sbjct: 96 IVVN-RFAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLK 154
Query: 75 CMQTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEAN 133
CMQTLSR+QSQIRSRR+RMSEENQA +QLLQKHAKEL ++ G W+ S QSKEQVEA
Sbjct: 155 CMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAG 214
Query: 134 LLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERWMAARPWES 193
+L KYEATMRRERA+AY+FTHQQ K+ SK++NPMFMDP NPTWGWSWLERWMA RPWES
Sbjct: 215 MLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWES 274
Query: 194 RSATEKEPNNDQSSVK-SANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQSPS 252
+ NND SSVK S NR+ GE +KS R +LNS P+
Sbjct: 275 SEKEQNTTNNDNSSVKNSTNRNSQGGETAKSSNRNKLNSS----------------TKPN 318
Query: 253 TPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPTSPS 312
TP SASST + + P S S + RR SIA SV DDE+L +S +
Sbjct: 319 TP--SASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSVSDDETL-SSST 375
Query: 313 APR--YMVPTESA---KAKSRLQSPLGVDKNGTPEKATL---ASAKKRLAYPPSPA-RPR 363
A R ++PT + K KS+ S + V + T E + L A AKKRL+ SPA +PR
Sbjct: 376 ARRSSNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPR 435
Query: 364 RHSGPPKLESSI 375
R S PPK+E +
Sbjct: 436 RSSAPPKVEKGV 447
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
Length = 668
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 183/334 (54%), Gaps = 51/334 (15%)
Query: 27 EEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQI 86
+ A+A +IQ AFRGY+AR++ RAL+GLVRL+ ++ G VKRQ N ++ MQ + R+QSQI
Sbjct: 321 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 380
Query: 87 RSRRVRMSEENQALQRQLLQKHAKELAMQMG-EEWDDSIQSKEQVEANLLSKYEATMRRE 145
+SRR++M ENQA Q+ + AK A + G + WDDS+ +KE+ ++ K +A ++RE
Sbjct: 381 QSRRIKM-LENQA---QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRE 436
Query: 146 RAMAYSFTHQQTWKNSSKSSNPMFMDPRN-PTWGWSWLERWMAARPWESRSATEKEPNND 204
R+MAY+++ ++ WKNS KS+ D R+ P W W+W++R P S + + +P D
Sbjct: 437 RSMAYAYS-RKLWKNSPKSTQ----DNRSFPQW-WNWVDR---QNPLASPAPSYSQPQRD 487
Query: 205 QSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQSPSTPTKSASSTVAK 264
S + +S+S ++ + D T+ + S++ H +PS P + +S +
Sbjct: 488 FRLTPS---RLCPSPLSQSSKQHHIRLDNHFDTSTPRSSRSTFH-TPSRPIHTGTSRYS- 542
Query: 265 KTKPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPTSPSAPRYMVPTESAK 324
RG + G D S +DD+SL + P P YM PT SAK
Sbjct: 543 -------RGRLRGQD-------------------SPFKDDDSLTSCPPFPSYMAPTVSAK 576
Query: 325 AKSRLQSPLGVDKNGTPEKATLASAKKRLAYPPS 358
AK R S GTP S K+R++YPP+
Sbjct: 577 AKVRPNSNPKERVMGTP-----VSEKRRMSYPPT 605
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 28 EAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIR 87
E AA +Q AFRGYLARRA AL+G++RL+ L+ G +V+RQA TL + + RLQ+ R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172
Query: 88 SRRVRMSEENQALQR----QLLQKHAKELAMQMGEEWDDSIQSKEQVEANLLSKYEATMR 143
R +R S+ + R QLLQ + L + +A +
Sbjct: 173 GREIRKSDIGVQVYRKCRLQLLQGN------------------------KLANPTDAYLG 208
Query: 144 RERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERWMAARPW 191
++ A +F Q+ +S K D NP WLE W A+ W
Sbjct: 209 IKKLTANAFA-QKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 17/61 (27%)
Query: 309 TSPSAPRYMVPTESAKAKSRLQ-SPLGVDKNGTPEKATLASAKKRLAYPPSPARPRRHSG 367
TSPS P YM T+SAKAK RLQ SP +++GT EKAT+ PRRHS
Sbjct: 494 TSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGT-EKATV---------------PRRHSL 537
Query: 368 P 368
P
Sbjct: 538 P 538
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
Length = 794
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 59/175 (33%)
Query: 27 EEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQI 86
+E+ + IQ A RG+LARR L + +++L+ + G +V+ QA +LRC+Q + ++Q+ +
Sbjct: 214 DESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMV 273
Query: 87 RSR-------RVRM----SEENQALQRQLLQKHAKELAMQMGEEWDDSIQSKEQVEANLL 135
R+R RV SE N A Q+ L K AK L
Sbjct: 274 RARHSTKDGSRVSATSDKSEPNAAAQKLLENKFAKHLM---------------------- 311
Query: 136 SKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFM--DPRNPTWGWSWLERWMAA 188
S+ + P+ + DP P+ W+WLERWM+
Sbjct: 312 ------------------------ESTPKTKPINIKCDPTKPSSAWNWLERWMSV 342
>sp|P36425|SP17_RABIT Sperm surface protein Sp17 OS=Oryctolagus cuniculus GN=SPA17 PE=1
SV=2
Length = 146
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 8 QSVTEVR--IVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALR 51
QSVTE ++T K KEE AA++IQ AFRG+LAR ++ +R
Sbjct: 89 QSVTEEETPVLTIDSEDDKDKEEMAALKIQAAFRGHLAREDVKKIR 134
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 37.7 bits (86), Expect = 0.16, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 190 PWESRSATEKEPNNDQSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQ 249
P S ++ + P + + S S S + + S + +Y S K SPT+ + +P Q
Sbjct: 2295 PKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQ 2354
Query: 250 SPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQ 289
+ ++P S S + K P SP S+S D +V+
Sbjct: 2355 NIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAH 2394
Score = 37.4 bits (85), Expect = 0.19, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 190 PWESRSATEKEPNNDQSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQ 249
P ++ ++ N Q +V S S+ + + S + +Y S K SPT+ + +PK+
Sbjct: 2267 PTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY- 2325
Query: 250 SPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPT 309
SP++P S +S K P SP+ S + ++ +Y +SI PT
Sbjct: 2326 SPTSPKYSPTS---PKYSPTSPKYSPT---SPVAQNIASPNYSPYSITSPKFS-----PT 2374
Query: 310 SP----SAPRY-----MVPTESAKAKSRLQSPLGVDKN-------GTPEKATLASAKKRL 353
SP S+P Y + + LQSP+ + +N ++A + AK
Sbjct: 2375 SPAYSISSPVYDKSGVVNAHQPMSPAYILQSPVQIKQNVQDVNMFSPIQQAHVDEAKNDD 2434
Query: 354 AYPPSP 359
+ P P
Sbjct: 2435 PFSPMP 2440
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1
Length = 1846
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 21/113 (18%)
Query: 30 AAIRIQTAFRGYLARRALRALR-------GLVRLKLLMEGPVV--KRQAANTLRCMQTLS 80
AAI IQ AFR AR+AL+AL+ L RL + ME VV +R+ + + +TLS
Sbjct: 888 AAIVIQCAFRRLKARQALKALKIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEFKTLS 947
Query: 81 RLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEA 132
S + S A++ ++K KELA Q +E D S+Q +E+V++
Sbjct: 948 EQLSAVTS--------THAME---VEKLKKELARYQQNQEADPSLQLQEEVQS 989
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2
Length = 1818
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 21/117 (17%)
Query: 26 KEEAAAIRIQTAFRGYLARRALRALR-------GLVRLKLLMEGPVV--KRQAANTLRCM 76
+E AAI IQ AFR AR+ L+AL+ L RL + ME VV +R+ + +
Sbjct: 883 RERDAAIVIQCAFRRLKARQELKALKIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEF 942
Query: 77 QTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEA 132
+TLS S + S + A++ ++K KELA Q +E D S+Q +E+V++
Sbjct: 943 KTLSEQLSAVTS--------SHAVE---VEKLKKELAHYQQNQEADTSLQLQEEVQS 988
>sp|O55225|OTOG_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=2
Length = 2910
Score = 35.0 bits (79), Expect = 0.92, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 162 SKSSNPMFMDPRNPTWGWSWLERWMAARPWESRSATEKEPNNDQSSVKSANRSIVAGEIS 221
S S P+ P P+W WS +++RP S AT P + S + +A V +
Sbjct: 1622 SHDSFPVKTTPLQPSWLWS-----LSSRPMTSLGATSWPPTSPGSHLSTA----VTKVAN 1672
Query: 222 KSFARYQLNSDKLSPTTNQKISKTPKHQSPSTPTKSASSTVAKKTK 267
K+ + + S ++ + T H++P++P + V T+
Sbjct: 1673 KTMTSLSVLAQSTSSSSQPLAAVTTAHRAPASPLVTKGLEVVSATE 1718
>sp|Q3TYL0|YH010_MOUSE Putative IQ motif and ankyrin repeat domain-containing protein
LOC642574 homolog OS=Mus musculus PE=5 SV=2
Length = 343
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 22 AGKSKEEAAAIRIQTAFRGYLARRAL 47
A + E+ AAI IQ AFR YLARR L
Sbjct: 114 AAPTAEDKAAIVIQCAFRQYLARREL 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.121 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,056,447
Number of Sequences: 539616
Number of extensions: 4850507
Number of successful extensions: 20676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 442
Number of HSP's that attempted gapping in prelim test: 19454
Number of HSP's gapped (non-prelim): 1325
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)