Query 016618
Match_columns 386
No_of_seqs 257 out of 596
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 1E-13 2.2E-18 117.1 6.2 57 313-370 34-90 (102)
2 PF00612 IQ: IQ calmodulin-bin 98.0 7.3E-06 1.6E-10 50.6 3.4 21 28-48 1-21 (21)
3 smart00015 IQ Short calmodulin 97.5 9.1E-05 2E-09 47.8 2.8 22 27-48 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.3 0.00036 7.8E-09 77.7 6.7 63 27-93 672-735 (862)
5 KOG0520 Uncharacterized conser 96.6 0.0015 3.2E-08 73.4 3.5 73 26-98 808-888 (975)
6 PTZ00014 myosin-A; Provisional 95.8 0.0087 1.9E-07 67.0 4.2 41 29-69 778-819 (821)
7 KOG0160 Myosin class V heavy c 95.4 0.033 7.1E-07 62.6 6.8 66 26-94 694-759 (862)
8 COG5022 Myosin heavy chain [Cy 92.4 0.28 6E-06 57.7 6.9 65 27-92 744-809 (1463)
9 KOG0520 Uncharacterized conser 91.5 0.53 1.2E-05 53.7 7.7 63 30-92 835-930 (975)
10 KOG2128 Ras GTPase-activating 90.5 0.46 1E-05 55.7 6.0 67 27-93 564-639 (1401)
11 PF00612 IQ: IQ calmodulin-bin 90.2 0.13 2.8E-06 31.5 0.8 19 51-69 2-20 (21)
12 KOG0164 Myosin class I heavy c 90.1 0.49 1.1E-05 52.5 5.5 55 29-94 697-752 (1001)
13 smart00015 IQ Short calmodulin 82.8 0.6 1.3E-05 29.9 0.9 19 51-69 4-22 (26)
14 PTZ00014 myosin-A; Provisional 81.7 2.1 4.5E-05 48.5 5.2 40 52-94 779-818 (821)
15 KOG0942 E3 ubiquitin protein l 81.1 1 2.2E-05 51.1 2.4 26 25-50 26-51 (1001)
16 KOG4427 E3 ubiquitin protein l 80.7 1.5 3.3E-05 49.1 3.5 39 26-66 28-67 (1096)
17 KOG0377 Protein serine/threoni 71.8 4.8 0.00011 42.9 4.2 39 26-64 15-54 (631)
18 KOG0162 Myosin class I heavy c 60.5 7.3 0.00016 43.9 3.1 22 30-51 698-719 (1106)
19 KOG2128 Ras GTPase-activating 60.0 13 0.00027 44.4 5.0 61 32-95 539-611 (1401)
20 KOG0161 Myosin class II heavy 50.7 57 0.0012 40.7 8.5 39 29-67 774-816 (1930)
21 KOG0163 Myosin class VI heavy 47.6 22 0.00047 40.5 4.1 32 27-58 812-844 (1259)
22 PF08763 Ca_chan_IQ: Voltage g 47.3 22 0.00048 25.1 2.7 22 27-48 8-29 (35)
23 KOG0161 Myosin class II heavy 42.4 38 0.00082 42.2 5.4 42 51-92 774-815 (1930)
24 COG5022 Myosin heavy chain [Cy 36.0 39 0.00084 40.7 4.0 50 41-90 735-785 (1463)
25 KOG1767 40S ribosomal protein 35.8 26 0.00056 30.5 1.9 20 37-56 71-92 (110)
26 PF15157 IQ-like: IQ-like 31.2 43 0.00092 28.4 2.5 19 28-46 47-65 (97)
27 KOG0165 Microtubule-associated 26.9 69 0.0015 36.6 3.8 22 27-48 942-963 (1023)
28 PRK10984 DNA-binding transcrip 25.0 20 0.00044 32.0 -0.5 7 176-183 53-59 (127)
29 PF04625 DEC-1_N: DEC-1 protei 22.2 4.2E+02 0.0091 27.6 8.0 64 27-90 222-309 (407)
30 PF07417 Crl: Transcriptional 20.4 19 0.0004 32.2 -1.6 12 172-184 46-58 (125)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.45 E-value=1e-13 Score=117.10 Aligned_cols=57 Identities=47% Similarity=0.611 Sum_probs=47.1
Q ss_pred CCCCCccCccccccccccCCCCCCCCCCCCccccccccCcccCCCCCCCCCccCCCCC
Q 016618 313 APRYMVPTESAKAKSRLQSPLGVDKNGTPEKATLASAKKRLAYPPSPARPRRHSGPPK 370 (386)
Q Consensus 313 ~p~ym~~T~sakak~R~~s~p~~~~~~~~e~~~~~~~kkRlS~p~s~~~~r~~s~~p~ 370 (386)
+||||++|||||||+|+||+|++ +++++|......++||||||.+.+.....+..|+
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrq-R~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~ 90 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQ-RPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPR 90 (102)
T ss_pred CCCccchhhhhhhhhhccCCccc-CCCccccccccccccccccCCCCCCCcCCCCCCc
Confidence 89999999999999999999997 7777766544578999999987775666665554
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.99 E-value=7.3e-06 Score=50.55 Aligned_cols=21 Identities=52% Similarity=0.809 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 016618 28 EAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 28 e~AAi~IQsafRGylARr~l~ 48 (386)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.50 E-value=9.1e-05 Score=47.79 Aligned_cols=22 Identities=55% Similarity=0.776 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 016618 27 EEAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~ 48 (386)
.+.||++||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.33 E-value=0.00036 Score=77.71 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhh
Q 016618 27 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRM 93 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~ 93 (386)
...+++.||..||||+.|+.|..+ ++++.+|+++||.++|+. . + ...+++.+|+.+|+...|+
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~--~-~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE--T-E-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh--h-H-HHHHHHHhHHHHHHHHHHH
Confidence 345778899999999999999999 789999999999999981 1 2 4455555565555555554
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.60 E-value=0.0015 Score=73.44 Aligned_cols=73 Identities=26% Similarity=0.363 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHH-------HHHhHHHHHHHHHHHHHhhhhhhh
Q 016618 26 KEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTL-------RCMQTLSRLQSQIRSRRVRMSEEN 97 (386)
Q Consensus 26 ~ee~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tl-------r~~qAav~vQs~vR~r~~R~see~ 97 (386)
....||..||.-||||+.|+.|..+ .-+|++|+.|||+.+|+++.... +-+.++-++|+.+|+++.|...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3456999999999999999999999 67999999999999999997332 345667778999999998876554
Q ss_pred H
Q 016618 98 Q 98 (386)
Q Consensus 98 ~ 98 (386)
+
T Consensus 888 ~ 888 (975)
T KOG0520|consen 888 Q 888 (975)
T ss_pred c
Confidence 3
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.77 E-value=0.0087 Score=67.03 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa 69 (386)
..++.||++||||++|+.|... .++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999999999999987 7899999999999988754
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=95.36 E-value=0.033 Score=62.61 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 26 KEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 26 ~ee~AAi~IQsafRGylARr~l~alkglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
....+++.||+.+||+++|+........+.+|..+|++..|+++ .....+++.+|+.+|+..+|..
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 45678999999999999998333236778889999999999999 4557788999999999999983
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=92.41 E-value=0.28 Score=57.68 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhh
Q 016618 27 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVR 92 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R 92 (386)
-...+++||++|||++.|+.|.+. +.+..+|.+.+|..+++.....++ .....++|..++...-|
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHhhH
Confidence 346899999999999999988876 788888999999888876543332 34455566666554444
No 9
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=91.53 E-value=0.53 Score=53.65 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhh---hhHH--------HHHhhhcccchhhhh----------------------HHHHHHH
Q 016618 30 AAIRIQTAFRGYLARRALRAL---RGLV--------RLKLLMEGPVVKRQA----------------------ANTLRCM 76 (386)
Q Consensus 30 AAi~IQsafRGylARr~l~al---kglV--------rLQalvRG~~vRrqa----------------------~~tlr~~ 76 (386)
=+|+||+++|||..|+.|+.| -|+. ++|.-+||+..|+.+ ..+.+--
T Consensus 835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~ 914 (975)
T KOG0520|consen 835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT 914 (975)
T ss_pred ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999877 2221 237778888776522 2234556
Q ss_pred hHHHHHHHHHHHHHhh
Q 016618 77 QTLSRLQSQIRSRRVR 92 (386)
Q Consensus 77 qAav~vQs~vR~r~~R 92 (386)
+|+++||+.+|....+
T Consensus 915 ~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 915 RAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHhcCHHHH
Confidence 8999999999988777
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.47 E-value=0.46 Score=55.68 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhHHH----HHHHHhh-hhHHHHHhhhcccchhhhhHH----HHHHHhHHHHHHHHHHHHHhhh
Q 016618 27 EEAAAIRIQTAFRGYLA----RRALRAL-RGLVRLKLLMEGPVVKRQAAN----TLRCMQTLSRLQSQIRSRRVRM 93 (386)
Q Consensus 27 ee~AAi~IQsafRGylA----Rr~l~al-kglVrLQalvRG~~vRrqa~~----tlr~~qAav~vQs~vR~r~~R~ 93 (386)
..-..+.||..+|||+. ...+... +.+|.+|++.||+++|+.+.. -..||...+.+|+.+|.+..|.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 44578899999999993 1222222 789999999999999998763 3569999999999999998885
No 11
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=90.21 E-value=0.13 Score=31.53 Aligned_cols=19 Identities=5% Similarity=0.254 Sum_probs=13.3
Q ss_pred hhHHHHHhhhcccchhhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa 69 (386)
+.+|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3567777777777777765
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=90.06 E-value=0.49 Score=52.53 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh-HHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 29 AAAIRIQTAFRGYLARRALRALRG-LVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~alkg-lVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
.-|+.||.+|||+++|..|+.++. ++.++ ..|.+-+ -..+-.||.++|+.+.++-
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhccc
Confidence 478999999999999999999954 44444 4442222 2234567888888776653
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=82.75 E-value=0.6 Score=29.88 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.3
Q ss_pred hhHHHHHhhhcccchhhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa 69 (386)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677888888888888876
No 14
>PTZ00014 myosin-A; Provisional
Probab=81.68 E-value=2.1 Score=48.49 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.1
Q ss_pred hHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 52 GLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 52 glVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
-++.||+.+||++.|+.+ ++..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 466789999999999999 4558899999999999987753
No 15
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.11 E-value=1 Score=51.09 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhh
Q 016618 25 SKEEAAAIRIQTAFRGYLARRALRAL 50 (386)
Q Consensus 25 ~~ee~AAi~IQsafRGylARr~l~al 50 (386)
.++|.+||+||+.+|||++|++.+.+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999998766
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=1.5 Score=49.10 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhHH-HHHhhhcccchh
Q 016618 26 KEEAAAIRIQTAFRGYLARRALRALRGLV-RLKLLMEGPVVK 66 (386)
Q Consensus 26 ~ee~AAi~IQsafRGylARr~l~alkglV-rLQalvRG~~vR 66 (386)
++|.||+.||..+|||++|+.+. +.|. .+-.++-.+.+-
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~--~~I~~e~d~~f~~d~~d 67 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ--IEIQEEFDNLFSCDSVD 67 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcCCcc
Confidence 57789999999999999999876 2222 234455444444
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=71.76 E-value=4.8 Score=42.89 Aligned_cols=39 Identities=31% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHhhh-cccc
Q 016618 26 KEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLM-EGPV 64 (386)
Q Consensus 26 ~ee~AAi~IQsafRGylARr~l~alkglVrLQalv-RG~~ 64 (386)
+--.|||.||.-||+|.||...+.--...-+|++- -|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQ 54 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQ 54 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCcc
Confidence 44579999999999999999887655666678874 4544
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=60.49 E-value=7.3 Score=43.87 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhh
Q 016618 30 AAIRIQTAFRGYLARRALRALR 51 (386)
Q Consensus 30 AAi~IQsafRGylARr~l~alk 51 (386)
=|.+||.|||.|++||.+..++
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999883
No 19
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=59.99 E-value=13 Score=44.40 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHHHHHhhhHHHHHHHHhh--------hhHHHHHhhhcccchhhhhH----HHHHHHhHHHHHHHHHHHHHhhhhh
Q 016618 32 IRIQTAFRGYLARRALRAL--------RGLVRLKLLMEGPVVKRQAA----NTLRCMQTLSRLQSQIRSRRVRMSE 95 (386)
Q Consensus 32 i~IQsafRGylARr~l~al--------kglVrLQalvRG~~vRrqa~----~tlr~~qAav~vQs~vR~r~~R~se 95 (386)
.+||+..|||..|-+++.. ..++.+|+++||.++ ++ .......-+|.+|+..|+...|.+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 3459999999999988765 267888999999986 22 2233445688999999999999764
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.66 E-value=57 Score=40.70 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh----hhHHHHHhhhcccchhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKR 67 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al----kglVrLQalvRG~~vRr 67 (386)
.-.+.+|+.+||||+|+.|... .+|..||.=+|-++.-|
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567789999999999988755 47777787777665544
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.58 E-value=22 Score=40.50 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHh
Q 016618 27 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKL 58 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~al-kglVrLQa 58 (386)
+..+.+++|...||||+|+.++-- .|++++-+
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 567889999999999999987643 45554433
No 22
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=47.31 E-value=22 Score=25.14 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 016618 27 EEAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~ 48 (386)
+-.||..||-.||-|.+|+.-.
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998643
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=42.42 E-value=38 Score=42.17 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=37.7
Q ss_pred hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhh
Q 016618 51 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVR 92 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R 92 (386)
.-|+.|||.|||+++|+.+......+.++..||.-+|.+...
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568888999999999999998899999999999999998544
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=35.98 E-value=39 Score=40.74 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHH
Q 016618 41 YLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRR 90 (386)
Q Consensus 41 ylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~ 90 (386)
+|.-++-..+ .-+++||+.+||..+||++..+++.++++..+|..++.++
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~ 785 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR 785 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 3333333344 5788999999999999999777777766666666655553
No 25
>KOG1767 consensus 40S ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=35.84 E-value=26 Score=30.54 Aligned_cols=20 Identities=45% Similarity=0.775 Sum_probs=17.7
Q ss_pred HhhhHHHHHHHHhh--hhHHHH
Q 016618 37 AFRGYLARRALRAL--RGLVRL 56 (386)
Q Consensus 37 afRGylARr~l~al--kglVrL 56 (386)
-++|-|||.+++.| +|+|+.
T Consensus 71 kIngsLAr~alr~L~~kG~Ik~ 92 (110)
T KOG1767|consen 71 KINGSLARAALRELSNKGVIKQ 92 (110)
T ss_pred hhchHHHHHHHHHHHhcchHHH
Confidence 36899999999999 899865
No 26
>PF15157 IQ-like: IQ-like
Probab=31.20 E-value=43 Score=28.40 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 016618 28 EAAAIRIQTAFRGYLARRA 46 (386)
Q Consensus 28 e~AAi~IQsafRGylARr~ 46 (386)
|.-+..||.+||-||+|..
T Consensus 47 eskvkiiqrawre~lq~qd 65 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQD 65 (97)
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 4456789999999999875
No 27
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=26.89 E-value=69 Score=36.64 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 016618 27 EEAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~ 48 (386)
...||+.||.+.|||.+||.|+
T Consensus 942 kKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 942 KKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999988
No 28
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=24.99 E-value=20 Score=32.03 Aligned_cols=7 Identities=71% Similarity=2.537 Sum_probs=5.1
Q ss_pred CCCCchhh
Q 016618 176 TWGWSWLE 183 (386)
Q Consensus 176 ~wgWsWLE 183 (386)
=||| |||
T Consensus 53 FWGW-Wme 59 (127)
T PRK10984 53 FWGW-WME 59 (127)
T ss_pred hhhh-hee
Confidence 3999 665
No 29
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=22.16 E-value=4.2e+02 Score=27.62 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh------------------------hhHHHHHhhhcccchhhhhHHHHHHHhHHHHH
Q 016618 27 EEAAAIRIQTAFRGYLARRALRAL------------------------RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRL 82 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~al------------------------kglVrLQalvRG~~vRrqa~~tlr~~qAav~v 82 (386)
...|-.+|-++.+--..|.+-..+ |.+-+|+--.+=+..-||.+.+|+.+|-+.++
T Consensus 222 ~q~aq~kiksal~~eQ~~q~q~~~~dqe~vPLlWfRmP~~q~~~~~~~Kt~e~lrieakL~AFerQVI~EL~~LQqIEr~ 301 (407)
T PF04625_consen 222 SQLAQMKIKSALEMEQERQQQQQVKDQEQVPLLWFRMPTTQNEDETEDKTTEDLRIEAKLRAFERQVIAELKMLQQIERM 301 (407)
T ss_pred hhhHHhhhhhHHHHHHHHHhhhcccccccCceeEEeccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888877666632111 23333433233333457888888888888888
Q ss_pred HHHHHHHH
Q 016618 83 QSQIRSRR 90 (386)
Q Consensus 83 Qs~vR~r~ 90 (386)
=...|+..
T Consensus 302 AkeMRasA 309 (407)
T PF04625_consen 302 AKEMRASA 309 (407)
T ss_pred HHHHHhhh
Confidence 77777644
No 30
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=20.35 E-value=19 Score=32.19 Aligned_cols=12 Identities=58% Similarity=1.672 Sum_probs=7.0
Q ss_pred CCCC-CCCCchhhh
Q 016618 172 PRNP-TWGWSWLER 184 (386)
Q Consensus 172 ~~~p-~wgWsWLER 184 (386)
|++- =||| |||-
T Consensus 46 PEkREFWGW-WleL 58 (125)
T PF07417_consen 46 PEKREFWGW-WLEL 58 (125)
T ss_dssp CCC--EEEE-EEEE
T ss_pred hhhhhhhhh-heee
Confidence 4433 3999 7763
Done!