Query 016618
Match_columns 386
No_of_seqs 257 out of 596
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.0 3.1E-10 1.1E-14 84.7 5.5 53 26-79 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.7 1.6E-08 5.4E-13 72.5 4.2 41 29-69 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.6 7E-08 2.4E-12 107.9 7.5 70 25-95 813-883 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.5 1.1E-07 3.7E-12 106.4 8.2 67 28-95 768-835 (1080)
5 2l53_B CAM, voltage-gated sodi 98.1 1.8E-06 6.1E-11 57.8 2.7 24 25-48 3-26 (31)
6 2kxw_B Sodium channel protein 98.0 3.3E-06 1.1E-10 54.9 2.4 22 25-46 3-24 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.6 5E-05 1.7E-09 54.1 4.4 42 51-93 4-45 (48)
8 1wdc_A Scallop myosin; calcium 96.9 0.00092 3.2E-08 50.5 4.7 40 28-67 6-49 (64)
9 2bl0_A Major plasmodial myosin 96.9 0.00074 2.5E-08 50.9 3.6 39 29-67 5-47 (63)
10 2ix7_C Myosin-5A; contractIle 96.7 0.0013 4.3E-08 48.6 4.0 42 51-95 6-47 (58)
11 1kk8_A Myosin heavy chain, str 96.3 0.0026 8.9E-08 69.7 4.7 41 29-69 780-824 (837)
12 2bl0_A Major plasmodial myosin 96.1 0.0048 1.6E-07 46.5 4.0 44 51-94 5-48 (63)
13 1wdc_A Scallop myosin; calcium 96.1 0.0055 1.9E-07 46.2 4.4 44 51-94 7-50 (64)
14 3gn4_A Myosin-VI; unconvention 95.2 0.019 6.5E-07 50.9 4.8 34 27-60 44-78 (148)
15 1i84_S Smooth muscle myosin he 95.1 0.038 1.3E-06 62.3 8.3 41 29-69 793-837 (1184)
16 4dck_A Sodium channel protein 93.5 0.05 1.7E-06 49.1 3.8 26 24-49 126-151 (168)
17 1kk8_A Myosin heavy chain, str 92.2 0.16 5.3E-06 55.8 6.1 47 48-94 776-823 (837)
18 1i84_S Smooth muscle myosin he 87.9 0.55 1.9E-05 53.0 6.0 53 42-94 783-836 (1184)
19 4anj_A Unconventional myosin-V 79.6 1.6 5.4E-05 49.1 5.0 35 28-63 775-810 (1052)
20 3gn4_A Myosin-VI; unconvention 44.6 22 0.00075 31.3 4.3 20 51-70 46-65 (148)
21 3dvk_B Voltage-dependent R-typ 33.5 17 0.00058 22.6 1.3 18 27-44 5-22 (23)
22 4anj_A Unconventional myosin-V 31.9 34 0.0011 38.6 4.3 42 50-94 774-815 (1052)
23 2f3y_B Voltage-dependent L-typ 31.7 29 0.00098 22.1 2.1 19 30-48 4-22 (26)
24 3bxl_B CAM, voltage-dependent 30.8 34 0.0011 21.8 2.3 18 29-46 3-20 (26)
25 2be6_D Voltage-dependent L-typ 29.7 39 0.0013 23.1 2.7 22 27-48 10-31 (37)
26 3iz6_V 40S ribosomal protein S 20.1 23 0.00077 29.7 0.1 22 35-56 69-92 (108)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.01 E-value=3.1e-10 Score=84.72 Aligned_cols=53 Identities=30% Similarity=0.421 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHH
Q 016618 26 KEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTL 79 (386)
Q Consensus 26 ~ee~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAa 79 (386)
+.+.|||.||+.||||++|+.|..+ ++++.||+.+||+++|+.+. .++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 5678999999999999999999999 68999999999999999994 45555554
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.6e-08 Score=72.55 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh-h--hHHHHHhhhcccchhhhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL-R--GLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al-k--glVrLQalvRG~~vRrqa 69 (386)
.|||.||+.||||++|+.+..+ + ..+.||+.+||+++|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 5899999999999999999887 3 788888888888888765
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.55 E-value=7e-08 Score=107.92 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 016618 25 SKEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 95 (386)
Q Consensus 25 ~~ee~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~se 95 (386)
.+++.||++||+.||||++|+.|..+ .+++.||+.+||+++|+++. .++...+++.||+.+|++..|+..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHHHT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998888 67888899999999988884 455566788888888887777643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.53 E-value=1.1e-07 Score=106.37 Aligned_cols=67 Identities=28% Similarity=0.353 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 016618 28 EAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 95 (386)
Q Consensus 28 e~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~se 95 (386)
..||+.||++||||++|+.|+.+ .+++.||+.+||+++|+.+ ..++...|++.||+.+|++.+|+.-
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence 56999999999999999999999 7899999999999999998 5578899999999999999999753
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=1.8e-06 Score=57.78 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHH
Q 016618 25 SKEEAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 25 ~~ee~AAi~IQsafRGylARr~l~ 48 (386)
.+||.||++||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998754
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.96 E-value=3.3e-06 Score=54.85 Aligned_cols=22 Identities=45% Similarity=0.705 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH
Q 016618 25 SKEEAAAIRIQTAFRGYLARRA 46 (386)
Q Consensus 25 ~~ee~AAi~IQsafRGylARr~ 46 (386)
.+||.||++||.|||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999875
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.63 E-value=5e-05 Score=54.08 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRM 93 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~ 93 (386)
+.++.||+.+||+++|+++ ..++...+++.||+.+|++.+|+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999999 55667789999999999998886
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.93 E-value=0.00092 Score=50.50 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh----hhHHHHHhhhcccchhh
Q 016618 28 EAAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKR 67 (386)
Q Consensus 28 e~AAi~IQsafRGylARr~l~al----kglVrLQalvRG~~vRr 67 (386)
...++.||+..|||++|+.|..+ .++..||.-+|+++.++
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888888888887765 23444455555555444
No 9
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.85 E-value=0.00074 Score=50.95 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh----hhHHHHHhhhcccchhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKR 67 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al----kglVrLQalvRG~~vRr 67 (386)
..++.||+..|||++|+.|..+ .++..||.-+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777777777777654 23333444444444433
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.74 E-value=0.0013 Score=48.61 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.5
Q ss_pred hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 95 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~se 95 (386)
..+|.||+.+||+++|+.+ ++...+++.||+.+||+.+|+.-
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~ 47 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYA 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 34457999999999999998753
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.29 E-value=0.0026 Score=69.72 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh----hhHHHHHhhhcccchhhhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al----kglVrLQalvRG~~vRrqa 69 (386)
.+|+.||+++|||++|+.|+.+ ..++.||..+||+++||..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4789999999999999999887 3577777777777777765
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.12 E-value=0.0048 Score=46.45 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=39.1
Q ss_pred hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
.-++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45788999999999999999888888999999999999887763
No 13
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.12 E-value=0.0055 Score=46.18 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=39.1
Q ss_pred hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 51 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
+-++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45889999999999999999888888999999999999877653
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.20 E-value=0.019 Score=50.88 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhh
Q 016618 27 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLM 60 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~al-kglVrLQalv 60 (386)
+..|+|+||+..||||+|+.++-= .|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 678999999999999999988744 8888887764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.14 E-value=0.038 Score=62.33 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh----hhHHHHHhhhcccchhhhh
Q 016618 29 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKRQA 69 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~l~al----kglVrLQalvRG~~vRrqa 69 (386)
.+|+.||+.||||++|+.|..+ .+++.||..+||++.+|.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999987 4799999999999998864
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=93.51 E-value=0.05 Score=49.07 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHhhhHHHHHHHHh
Q 016618 24 KSKEEAAAIRIQTAFRGYLARRALRA 49 (386)
Q Consensus 24 ~~~ee~AAi~IQsafRGylARr~l~a 49 (386)
...|+.||++||.|||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35688999999999999999988765
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=92.25 E-value=0.16 Score=55.82 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=39.9
Q ss_pred Hhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 48 RAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 48 ~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
..+ +-++.||+.+||++.|+.+...+....|++.||..+|++..|+.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344 56788999999999999997766677899999999999988763
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.91 E-value=0.55 Score=52.97 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHhh-hhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 42 LARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 42 lARr~l~al-kglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
|....-..+ +-++.||+.+||++.|+.+...+....+++.||..+|++..++.
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443333445 56789999999999999998777778999999999999987753
No 19
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=79.60 E-value=1.6 Score=49.12 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh-hhHHHHHhhhccc
Q 016618 28 EAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGP 63 (386)
Q Consensus 28 e~AAi~IQsafRGylARr~l~al-kglVrLQalvRG~ 63 (386)
+.+|+.||. +|||++|+.|+.+ ...+.+|.+-|+.
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~ 810 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKI 810 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777775 7999999998877 4455555444443
No 20
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=44.63 E-value=22 Score=31.32 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=15.9
Q ss_pred hhHHHHHhhhcccchhhhhH
Q 016618 51 RGLVRLKLLMEGPVVKRQAA 70 (386)
Q Consensus 51 kglVrLQalvRG~~vRrqa~ 70 (386)
..++.+|..|||+++|++..
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 36777888888888888874
No 21
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=33.47 E-value=17 Score=22.60 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 016618 27 EEAAAIRIQTAFRGYLAR 44 (386)
Q Consensus 27 ee~AAi~IQsafRGylAR 44 (386)
+-.|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 457999999999998766
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=31.91 E-value=34 Score=38.57 Aligned_cols=42 Identities=7% Similarity=-0.091 Sum_probs=30.1
Q ss_pred hhhHHHHHhhhcccchhhhhHHHHHHHhHHHHHHHHHHHHHhhhh
Q 016618 50 LRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 94 (386)
Q Consensus 50 lkglVrLQalvRG~~vRrqa~~tlr~~qAav~vQs~vR~r~~R~s 94 (386)
+..++.+|..+||.++|+++. +...+++.||...|.++.|..
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~---k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWK---KVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666789999999994 445677788877777666553
No 23
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=31.74 E-value=29 Score=22.09 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 016618 30 AAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 30 AAi~IQsafRGylARr~l~ 48 (386)
|-..||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999988653
No 24
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=30.82 E-value=34 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 016618 29 AAAIRIQTAFRGYLARRA 46 (386)
Q Consensus 29 ~AAi~IQsafRGylARr~ 46 (386)
.||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998885
No 25
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=29.72 E-value=39 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 016618 27 EEAAAIRIQTAFRGYLARRALR 48 (386)
Q Consensus 27 ee~AAi~IQsafRGylARr~l~ 48 (386)
+=.|-..||-.||.|..|+.-.
T Consensus 10 KfYatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999998653
No 26
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.10 E-value=23 Score=29.69 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=18.2
Q ss_pred HHHhhhHHHHHHHHhh--hhHHHH
Q 016618 35 QTAFRGYLARRALRAL--RGLVRL 56 (386)
Q Consensus 35 QsafRGylARr~l~al--kglVrL 56 (386)
.--.+|-|||+.|+.| +|+|++
T Consensus 69 RlkI~gSLAR~aLreL~~kGlIk~ 92 (108)
T 3iz6_V 69 RLRINGSLARQAIKDLESRGAIRV 92 (108)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTSCE
T ss_pred hhcccHHHHHHHHHHHHHCCCEEE
Confidence 3457899999999999 898855
Done!