BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016619
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 109 KEDSPTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSRPDFTCKSTEETEA 167
K + T+++ HG G + R D LA + +RVIAVDQ+G SS+P S ++ A
Sbjct: 43 KANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAA 102
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGF 219
E ++ ++GHS GG +A +YAL +P V+ L+LV P G
Sbjct: 103 NTHALLERL----GVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGL 150
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 111 DSPTLIMVHGYG---ASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEA 167
+ T++++HG G AS F RN LA F V+AVDQ G G S + +
Sbjct: 55 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAM 114
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
F++ L L+G+SLGG A ++AL +P L+L+GP G S
Sbjct: 115 ALKGLFDQL----GLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLS 163
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 111 DSPTLIMVHGYG---ASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEA 167
+ T++++HG G AS F RN LA F V+AVDQ G G S + +
Sbjct: 35 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAM 94
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
F++ L L+G++LGG A ++AL +P L+L+GP G S
Sbjct: 95 ALKGLFDQL----GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLS 143
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 110 EDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWF 169
ED+P L+++HG S ++ N +S++R AVD +G S P+ + + W
Sbjct: 65 EDAPPLVLLHGALFSSTXWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWL 124
Query: 170 IDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
+D F+ K+ +G SLGG + L+ PE V+ ++ PA
Sbjct: 125 LDVFDNLGIEKSHX----IGLSLGGLHTXNFLLRXPERVKSAAILSPA 168
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 135 LASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFI-LLGHSLG 193
LA +RVIA+D LG G +++PD E T+ I ++ KA N + ++G+S+G
Sbjct: 62 LARHYRVIAMDMLGFGKTAKPDI-----EYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMG 116
Query: 194 GYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKSEWITKFRATWKGAI 241
G ++ H E V L+L+G AG + I + T +G +
Sbjct: 117 GATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMV 164
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFE 174
L+++HGY + + + LA+ F V+A D G G SSRP ++
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQV 87
Query: 175 EWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
E F ++GH G VA + AL HP V+ L L+ A
Sbjct: 88 EVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 84 PGSKIRWFRSSSDEPRFINTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIA 143
PG W +SS R V D P L+++HG+ + + R LA RF+VI
Sbjct: 11 PGFGSEWINTSSG--RIFARVG----GDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIV 64
Query: 144 VDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALK 203
D G G S P+ + T T+ E + +F L GH+ G V+ + AL
Sbjct: 65 ADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALD 124
Query: 204 HPEHVQHLILV 214
P + L ++
Sbjct: 125 SPGRLSKLAVL 135
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRF--RVIAVDQLGCGGSSR-PDFTCKSTEETEAWFID 171
LI++HG + N ALA VI DQ+GCG S+ PD + T F+D
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPD--APADFWTPQLFVD 114
Query: 172 SFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHL-ILVGPAGFSAQSDAKSEWI 230
F A + + +LG S GG + A+ A++ P + L I PA S+A +
Sbjct: 115 EFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLR 174
Query: 231 TKFRATWKGAILNH 244
+ A + A+ H
Sbjct: 175 AQLPAETRAALDRH 188
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFI 170
D P L+++HG+ + + R LA RF+VI D G G S P+ + T T+
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 171 DSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
E + +F L GH G V+ + AL P + L ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVL 135
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 84 PGSKIRWFRSSSDEPRFINTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIA 143
PG W +SS R V D P L+++HG+ + + R LA RF+VI
Sbjct: 11 PGFGSEWINTSSG--RIFARVG----GDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIV 64
Query: 144 VDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALK 203
D G G S P+ + T T+ E + +F L GH G V+ + AL
Sbjct: 65 ADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALD 124
Query: 204 HPEHVQHLILV 214
P + L ++
Sbjct: 125 SPGRLSKLAVL 135
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFI 170
D P L+++HG+ + + R LA RF+VI D G G S P+ + T T+
Sbjct: 32 DGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 171 DSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
E + +F L GH G V+ + AL P + L ++
Sbjct: 92 KQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVL 135
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L+ +HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L+G + GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCK 160
IN V S P L+++HG+ + + R LA+ + V+ D G GGSS+P
Sbjct: 17 INCVVGGS---GPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPD 73
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
+ E + F L+GH+ GG + AL HP+ V L ++
Sbjct: 74 HANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVL 127
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFI 170
D+P ++++ G G S ++ L ++V+ DQ G G + PD + + + A
Sbjct: 14 DAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTG--NNPDTL--AEDYSIAQXA 69
Query: 171 DSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
+ A + ++ ++GH+LG V + AL +P V LI V
Sbjct: 70 AELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISV 113
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 107 DSKEDSPTLIMVHGYG-ASQGF--FFRNFDALA-SRFRVIAVDQLGCGGSSRPDFTCKST 162
D + T++++HG G + G+ F RN D L + +RVI +D C G + D S
Sbjct: 31 DCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLD---CPGWGKSDSVVNSG 87
Query: 163 EETE--AWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV--GPAG 218
++ A + S + +++ LLG+S+GG+ + + LK PE V L+L+ G G
Sbjct: 88 SRSDLNARILKSVVD---QLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGG 144
Query: 219 FSAQSDAKSEWITKFRATWKGAILNHL 245
S + +E I + ++ + +L
Sbjct: 145 MSLFTPMPTEGIKRLNQLYRQPTIENL 171
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCK 160
IN V S P L+++HG+ + + R LA+ + V+ D G GGSS+P
Sbjct: 17 INCVVGGS---GPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPD 73
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
+ E + F L+GH GG + AL HP+ V L ++
Sbjct: 74 HANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVL 127
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 107 DSKEDSPTLIMVHGYGASQGFFFR---NFDALASRFRVIAVDQLGCGGSSRPDFTCKSTE 163
D E P +I++HG G + AL+ +RVIA D +G G + RP+ S +
Sbjct: 21 DVGEGQP-VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKD 79
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAG 218
+W +D A + ++G++ GG +A AL++ E V ++L+G AG
Sbjct: 80 ---SW-VDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAG 130
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
L++ HG+G Q + R +RV+ D L C GS PDF T ++D
Sbjct: 22 VLVLAHGFGTDQSAWNRILPFFLRDYRVVLYD-LVCAGSVNPDFFDFRRYTTLDPYVDDL 80
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
A + +GHS+ + +++ PE LIL+G
Sbjct: 81 LHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIG 122
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 107 DSKEDSPTLIMVHGYGASQGFFFR---NFDALASRFRVIAVDQLGCGGSSRPDFTCKSTE 163
D E P +I++HG G + AL+ +RVIA D +G G + RP+ S +
Sbjct: 21 DVGEGQP-VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKD 79
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAG 218
+W +D A + ++G+S GG +A AL++ E V ++L+G G
Sbjct: 80 ---SW-VDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVG 130
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 110 EDSPTLIMVHGY-GASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD---FTCK-STEE 164
E+ L HG G S + D V+ DQ GCG S PD FT EE
Sbjct: 26 EEKAKLXTXHGGPGXSHDYLLSLRDXTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 165 TEAWFIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
EA ++K N L G S GG +A YA+K+ +H++ LI+ G
Sbjct: 86 AEAL---------RSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 101 INTVTFDSKE--DSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFT 158
I +T + +E P + HG ++ F L+ RF IAVDQ G G S +P+
Sbjct: 55 IGRITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETG 114
Query: 159 CKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
++ + + D + + IL+GHSLG + A K+P+ V+ ++ +
Sbjct: 115 YEAND-----YADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAI 165
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFE 174
L + HG+G Q + +RV+ D L C GS PD+ + T ++D
Sbjct: 22 LFLAHGFGTDQSAWHLILPYFTQNYRVVLYD-LVCAGSVNPDYFDFNRYTTLDPYVDDLL 80
Query: 175 EWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
+ + N +GHS+ + +++ PE LIL+G
Sbjct: 81 NIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIG 121
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
L++ HG+G Q + R +RV+ D L C GS PDF T ++D
Sbjct: 22 VLVLAHGFGTDQSAWNRILPFFLRDYRVVLYD-LVCAGSVNPDFFDFRRYTTLDPYVDDL 80
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
A + +GH++ + +++ PE LIL+G
Sbjct: 81 LHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIG 122
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
T+++ HG+G Q + L +F VI D +G G S F+ K E + D
Sbjct: 30 TVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKD-V 88
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
EE A +L N ++GHS+ +A + + + + + P+
Sbjct: 89 EEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPS 132
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
+++ G+G Q + A RVI D +G G S + + + + D
Sbjct: 22 SIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVL 81
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
+ +A +L + +GHS+G + +++ PE HL++VGP+
Sbjct: 82 DVC-EALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPS 124
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD-FTCKSTEETEAWFIDS 172
+++ HG+G Q + R L RV+ D L C GS PD F + + +A+ +D
Sbjct: 21 VVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYD-LVCAGSVNPDHFDFRRYDNLDAY-VDD 78
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
A + +GHS+ + +++ P+ L+L+G
Sbjct: 79 LLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 121
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD-FTCKSTEETEAWFIDS 172
+++ HG+G Q + R L RV+ D L C GS PD F + + +A+ +D
Sbjct: 19 VVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYD-LVCAGSVNPDHFDFRRYDNLDAY-VDD 76
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
A + +GHS+ + +++ P+ L+L+G
Sbjct: 77 LLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 119
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 22/147 (14%)
Query: 106 FDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD--FTCKSTE 163
D + P L + + G + + AL FRV+ D G G SS P +T
Sbjct: 21 LDGAAEKPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLG 80
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLIL------VGPA 217
E +D+ E R ++F LG SLGG V AL P+ ++ L+L +GPA
Sbjct: 81 EDVLELLDALEVRR-----AHF--LGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPA 133
Query: 218 -------GFSAQSDAKSEWITKFRATW 237
Q++ SE F W
Sbjct: 134 AQWDERIAAVLQAEDXSETAAGFLGNW 160
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 111 DSPTLIMVHGYGASQGFFFRN--FDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
+ P ++ +HG QG ++ A +RV+A D G G SS + + T
Sbjct: 25 EHPVVLCIHGI-LEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLA 83
Query: 169 FIDSFEEWRKAKNLSN--FILLGHSLGGYVAAKYALKHPEHVQHLILVG---PAGFSAQS 223
ID R + L + +L+GHS+G +A A P+ ++ LILV PA S +
Sbjct: 84 QID-----RVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138
Query: 224 DAKSEWIT 231
A ++ T
Sbjct: 139 SAVNQLTT 146
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFE 174
L+++HG+G + + + L+S F + VD G G S F S + +
Sbjct: 16 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSR--GFGALSLADMAEAVLQQAP 73
Query: 175 EWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKSEW 229
+ I LG +LGG VA++ AL HPE VQ L+ V S A+ EW
Sbjct: 74 D--------KAIWLGWALGGLVASQIALTHPERVQALVTVAS---SPCFSARDEW 117
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 107 DSKEDSPTLIMVHGYGASQGFFFRNFDA-LASRFRVIAVDQLGCGGSSRPDFTCKSTEET 165
+S+ + L+M+HG +S F + + ++RVIA D G G S+ D +
Sbjct: 19 ESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST--DAIDPDRSYS 76
Query: 166 EAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
+ D+ E + +++ ++ G SLGG++ + ++PE ++ L++ G
Sbjct: 77 MEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITG 125
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 107 DSKEDSPTLIMVHGYGASQGFFFRNFDA-LASRFRVIAVDQLGCGGSSRPDFTCKSTEET 165
+S+ + L+M+HG +S F + + ++RVIA D G G S+ D +
Sbjct: 19 ESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST--DAIDPDRSYS 76
Query: 166 EAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
+ D+ E + +++ ++ G SLGG++ + ++PE ++ L++ G
Sbjct: 77 MEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITG 125
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD-FTCKSTEETEAWFIDS 172
T+++ HG+G Q + L +RV+ D +G G++ PD F E + D
Sbjct: 21 TIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMG-AGTTNPDYFDFDRYSNLEGYSFDL 79
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKSEWI-- 230
K + + I +GHS+ + +L P+ ++++ A ++
Sbjct: 80 IAILEDLK-IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMIS---------ASPRYVND 129
Query: 231 TKFRATWKGAILNHLWES 248
++ ++ LN L+E+
Sbjct: 130 VDYQGGFEQEDLNQLFEA 147
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 27/182 (14%)
Query: 103 TVTFDSKEDSPTLIMVHGYGASQG------FFFRNFDALASRFRVIAVDQLGCGGSSRPD 156
TV K P ++ H G + F F + + F + VD G P
Sbjct: 16 TVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGME-EGAPV 74
Query: 157 FTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
F + D + N S I +G G Y+ A+YAL HP+ V+ L+L+
Sbjct: 75 FPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLI-- 132
Query: 217 AGFSAQSDAKS--EW----ITKFRATWKGAILNHLWESNFTPQKIIRGLGPWGPDLVRKY 270
+ +AK +W +T ++ IL HL+ Q+ + G +L++KY
Sbjct: 133 ---NIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFS-----QEELSG----NSELIQKY 180
Query: 271 TN 272
N
Sbjct: 181 RN 182
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD-FTCKSTEETEAWFIDS 172
T+++ HG+G Q + L +RV+ D +G G++ PD F E + D
Sbjct: 19 TIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMG-AGTTNPDYFDFDRYSNLEGYSFDL 77
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
K + + I +GHS+ + +L P+ ++++
Sbjct: 78 IAILEDLK-IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 118
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 114 TLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD-FTCKSTEETEAWFIDS 172
T+++ HG+G Q + L +RV+ D +G G++ PD F E + D
Sbjct: 37 TIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMG-AGTTNPDYFDFDRYSNLEGYSFDL 95
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
K + + I +GHS+ + +L P+ ++++
Sbjct: 96 IAILEDLK-IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 136
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFE 174
L+++HG+G + + + L+S F + VD G G SR + EA + +
Sbjct: 16 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFG-RSRGFGALSLADXAEAVLQQAPD 74
Query: 175 EWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKSEW 229
+ I LG SLGG VA++ AL HPE V+ L+ V S A+ EW
Sbjct: 75 K---------AIWLGWSLGGLVASQIALTHPERVRALVTVAS---SPCFSARDEW 117
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---AVGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+S+GG A +AL++P+ + LIL+GP G
Sbjct: 108 LVGNSMGGATALNFALEYPDRIGKLILMGPGGLG 141
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 127 FFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFI 186
F F + + F + VD G P F + D + N S I
Sbjct: 46 FQFEDMQEIIQNFVRVHVDAPGME-EGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTII 104
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKS--EW----ITKFRATWKGA 240
+G G Y+ A+YAL HP+ V+ L+L+ + +AK +W +T ++
Sbjct: 105 GVGVGAGAYILARYALNHPDTVEGLVLI-----NIDPNAKGWMDWAAHKLTGLTSSIPEM 159
Query: 241 ILNHLWESNFTPQKIIRGLGPWGPDLVRKYTN 272
IL HL+ Q+ + G +L++KY N
Sbjct: 160 ILGHLFS-----QEELSG----NSELIQKYRN 182
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCK 160
++ V ++ +P L + HG S + +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYF 80
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 81 FDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 127 FFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFI 186
F F + + F + VD G P F + D + N S I
Sbjct: 46 FQFEDMQEIIQNFVRVHVDAPGME-EGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTII 104
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKS--EW----ITKFRATWKGA 240
+G G Y+ A+YAL HP+ V+ L+L+ + +AK +W +T ++
Sbjct: 105 GVGVGAGAYILARYALNHPDTVEGLVLI-----NIDPNAKGWMDWAAHKLTGLTSSIPEM 159
Query: 241 ILNHLWESNFTPQKIIRGLGPWGPDLVRKYTN 272
IL HL+ Q+ + G +L++KY N
Sbjct: 160 ILGHLFS-----QEELSG----NSELIQKYRN 182
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCK 160
++ V ++ +P L + HG S + +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYF 80
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 81 FDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+S+GG A +AL++P+ + LIL+GP G
Sbjct: 108 LVGNSMGGATALNFALEYPDRIGKLILMGPGGLG 141
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 19 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 76
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 77 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 121
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCK 160
++ V ++ +P L + HG S + +A R IA D +G G S +PD
Sbjct: 19 MHYVDVGPRDGTPVLFL-HGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYF 77
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 78 FDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 121
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 109 KEDSPTLIMVHGYGA--SQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETE 166
K + P L + H Y G F N + V V+ GCG S D +E +
Sbjct: 20 KGEGPPLCVTHLYSEYNDNGNTFAN--PFTDHYSVYLVNLKGCGNS---DSAKNDSEYSX 74
Query: 167 AWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAG 218
I E R+A ++ + GHS GG +A YA + E + +I+ G A
Sbjct: 75 TETIKDLEAIREALYINKWGFAGHSAGGXLALVYATEAQESLTKIIVGGAAA 126
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 103 TVTFDSKEDSPTLIMVHGYGASQGFFFRNFD--ALASRFRVIAVDQLGCGGSSRPDFTCK 160
T+ + + ++ +HG S + +RN +A+ +R +A D +G G S++PD +
Sbjct: 20 TIAYVDEGSGQPVLFLHGNPTSS-YLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYR 78
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHL----ILVGP 216
+ + D F + A L + +L+ H G + ++A +P+ V + LV P
Sbjct: 79 LQDHVA--YXDGFID---ALGLDDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEALVPP 133
Query: 217 AGFSAQSDAKSEWITKFRATWKGAILNH--LWESNFTPQKIIRGLGPWGPDLVRKYTNAR 274
A +A + + A + + + NF + I+ G +VR + A
Sbjct: 134 ALPXPSYEAXGPQLGPLFRDLRTADVGEKXVLDGNFFVETILPEXG-----VVRSLSEAE 188
Query: 275 FGAYSSGSVLTTEESSLLT 293
AY + T +S L T
Sbjct: 189 XAAYR--APFPTRQSRLPT 205
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 109 KEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
K P L+++HGY + + R LA + V+ D G G S D + + ++A
Sbjct: 28 KGSGPPLLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALD--EEGADYSKAA 85
Query: 169 FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHV 208
E F ++GH G V + AL HP+ V
Sbjct: 86 LARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAV 125
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSRP----DFTCKSTEETEA 167
P + + HG+ S + ALA + +RV+A+D G G SS P ++ + +
Sbjct: 40 PAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 99
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
F+D LS + +GH GG + AL +PE V+
Sbjct: 100 TFLDKL-------GLSQAVFIGHDWGGMLVWYMALFYPERVR 134
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 107 DSKEDSPTLIMVHGYGASQGFFFRNFDA-LASRFRVIAVDQLGCGGSSRPDFTCKSTEET 165
+S+ + L+M+HG +S F + + ++RVIA D G G S+ D +
Sbjct: 19 ESEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST--DAIDPDRSYS 76
Query: 166 EAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
+ D+ E + +++ ++ G LGG++ + ++PE ++ L++ G
Sbjct: 77 MEGYADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPE-MRGLMITG 125
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSRP----DFTCKSTEETEA 167
P + + HG+ S + ALA + +RV+A+D G G SS P ++ + +
Sbjct: 55 PAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 114
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
F+D LS + +GH GG + AL +PE V+
Sbjct: 115 TFLDKL-------GLSQAVFIGHDWGGMLVWYMALFYPERVR 149
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTC 159
++ V ++ +P L + HG + + +RN +A R IA D +G G S +PD
Sbjct: 22 MHYVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 160 KSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
+ ++D+F E A L +L+ H G + +A ++PE V+
Sbjct: 80 FFDDHVR--YLDAFIE---ALGLEEVVLVIHDWGSALGFHWAKRNPERVK 124
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+++GG A +AL++P+ + LIL+GP G
Sbjct: 108 LVGNAMGGATALNFALEYPDRIGKLILMGPGGLG 141
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+++GG A +AL++P+ + LIL+GP G
Sbjct: 108 LVGNAMGGATALNFALEYPDRIGKLILMGPGGLG 141
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+++GG A +AL++P+ + LIL+GP G
Sbjct: 108 LVGNAMGGATALNFALEYPDRIGKLILMGPGGLG 141
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFS 220
L+G+++GG A +AL++P+ + LIL+GP G
Sbjct: 105 LVGNAMGGATALNFALEYPDRIGKLILMGPGGLG 138
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSRP----DFTCKSTEETEA 167
P + + HG+ S + ALA + +RV+A+D G G SS P ++ + +
Sbjct: 259 PAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 318
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
F+D LS + +GH GG + AL +PE V+
Sbjct: 319 TFLDKL-------GLSQAVFIGHDWGGMLVWYMALFYPERVR 353
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSRP--------DFTCKSTE 163
P L + HG+ S + ALA + FRV+A+D G G SS P + CK
Sbjct: 257 PALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEM- 315
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQ 209
F+D + + +GH G + AL +PE V+
Sbjct: 316 ---VTFLDKL-------GIPQAVFIGHDWAGVMVWNMALFYPERVR 351
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSS-RPDFTCKSTEETEAWFID 171
P +++ G G R F A ++R++ DQ G G S+ D +T + +
Sbjct: 36 PVVMLHGGPGGGCNDKMRRFHDPA-KYRIVLFDQRGSGRSTPHADLVDNTTWD----LVA 90
Query: 172 SFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVG 215
E R + + + G S G +A YA HP+ V L+L G
Sbjct: 91 DIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRG 134
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 181 NLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKS--EW----ITKFR 234
N S I +G G Y+ ++YAL HP+ V+ L+L+ + +AK +W +T
Sbjct: 109 NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLI-----NIDPNAKGWMDWAAHKLTGLT 163
Query: 235 ATWKGAILNHLW 246
++ IL HL+
Sbjct: 164 SSIPDMILGHLF 175
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 110 EDSPTLIMVHGYGASQGFFFRNFDALASRF-RVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
+D+P ++ +HG S +RN L S IA D +G G S +PD + +
Sbjct: 27 QDAPVVLFLHGNPTSS-HIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVR-- 83
Query: 169 FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLI---LVGPAG-----FS 220
++D+F E R +++ L+ G +A A + P+ V+ L + P
Sbjct: 84 YLDAFIEQR---GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHQ 140
Query: 221 AQSDAKSEWITKFRATWKGAILNHLWESNFTPQKIIRGLGPWGPDLVRKYTNARFGAYSS 280
++A KFR +G + + E+N ++++ G +VRK + Y +
Sbjct: 141 DHAEAARAVFRKFRTPGEGEAM--ILEANAFVERVLPG------GIVRKLGDEEMAPYRT 192
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 108 SKEDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTE---- 163
+K+ TL+ VHG G + F + + I +D G G S C ST
Sbjct: 12 NKKSPNTLLFVHGSGCNLKIFGE-LEKYLEDYNCILLDLKGHGESKGQ---CPSTVYGYI 67
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLI-LVGPAGFS 220
+ A FI + E + KN++ L+G+S GG + ALK +V+ ++ L G A F
Sbjct: 68 DNVANFITNSEVTKHQKNIT---LIGYSXGGAIVLGVALKKLPNVRKVVSLSGGARFD 122
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 110 EDSPTLIMVHGYGASQGFFFRNFDALASRF-RVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
+D+P ++ +HG S +RN L S IA D +G G S +PD + +
Sbjct: 27 QDAPVVLFLHGNPTSS-HIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVR-- 83
Query: 169 FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILV 214
++D+F E R +++ L+ G +A A + P+ V+ L +
Sbjct: 84 YLDAFIEQR---GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFM 126
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 110 EDSPTLIMVHGYGASQGFFFRNFDALASRF-RVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
+D+P ++ +HG S +RN L S IA D +G G S +PD + +
Sbjct: 27 QDAPVVLFLHGNPTSS-HIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVR-- 83
Query: 169 FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHL 211
++D+F E R +++ L+ G +A A + P+ V+ L
Sbjct: 84 YLDAFIEQR---GVTSAYLVAQDWGTALAFHLAARRPDFVRGL 123
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDALASR-FRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++ HG+ + + L+SR +R IA D+ G G S +P T F D
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP-----WTGNDYDTFADDI 76
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKH-PEHVQHLILVG 215
+ + +L L+G S+GG A+Y +H V L+L+G
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDALASR-FRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++ HG+ + + L+SR +R IA D+ G G S +P T F D
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP-----WTGNDYDTFADDI 76
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKH-PEHVQHLILVG 215
+ + +L L+G S+GG A+Y +H V L+L+G
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 135 LASR-FRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLG 193
L+SR +R IA D+ G G S +P T F D + + +L L+G S+G
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQP-----WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG 96
Query: 194 GYVAAKYALKH-PEHVQHLILVG 215
G A+Y +H V L+L+G
Sbjct: 97 GGDVARYIARHGSARVAGLVLLG 119
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 135 LASR-FRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLG 193
L+SR +R IA D+ G G S +P T F D + + +L L+G S+G
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQP-----WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG 96
Query: 194 GYVAAKYALKH-PEHVQHLILVG 215
G A+Y +H V L+L+G
Sbjct: 97 GGDVARYIARHGSARVAGLVLLG 119
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 135 LASR-FRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLG 193
L+SR +R IA D+ G G S +P T F D + + +L L+G S+G
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQP-----WTGNDYDTFADDIAQLIEHLDLKEVTLVGFSMG 96
Query: 194 GYVAAKYALKH-PEHVQHLILVG 215
G A+Y +H V L+L+G
Sbjct: 97 GGDVARYIARHGSARVAGLVLLG 119
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 109 KEDSPTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSR----PDFTCKSTE 163
+ P ++++HG+ S + ALA + +RV+A+DQ G G SS+ + K
Sbjct: 30 DQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELV 89
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLI 212
+DS+ ++GH G VA +A HP+ ++
Sbjct: 90 GDVVGVLDSY-------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 109 KEDSPTLIMVHGYGASQGFFFRNFDALA-SRFRVIAVDQLGCGGSSR----PDFTCKSTE 163
+ P ++++HG+ S + ALA + +RV+A+DQ G G SS+ + K
Sbjct: 24 DQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELV 83
Query: 164 ETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLI 212
+DS+ ++GH G VA +A HP+ ++
Sbjct: 84 GDVVGVLDSY-------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 124 SQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLS 183
+Q FF L+ +RVIA D+ G G S +P ST + +A +L
Sbjct: 39 NQMLFF-----LSHGYRVIAHDRRGHGRSDQP-----STGHDMDTYAADVAALTEALDLR 88
Query: 184 NFILLGHSLGGYVAAKY-ALKHPEHVQHLILV 214
+ +GHS GG A+Y A P V +LV
Sbjct: 89 GAVHIGHSTGGGEVARYVARAEPGRVAKAVLV 120
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 112 SPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPD------FTCKSTEET 165
PTL+++HG+ + + LA + VI D G G S +PD ++ +
Sbjct: 29 GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADD 88
Query: 166 EAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
+A +D A + ++GH V K+ K+ + V + P
Sbjct: 89 QAALLD-------ALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 110 EDSPTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAW- 168
E + L+ +HG+ + + + + + VI +D G G S +ET W
Sbjct: 14 ETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQ------SSMDET--WN 65
Query: 169 ------FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLIL 213
+D + K K+++ L G+S+GG VA YA+ + +LIL
Sbjct: 66 FDYITTLLDRILDKYKDKSIT---LFGYSMGGRVALYYAINGHIPISNLIL 113
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSR 154
P LI HGY ++ G + + +A+ F V+A+D G GG S+
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQ 150
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 112 SPTLIMVHGYG--ASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAW 168
SP ++++HG G A +R LA F V+A D +G G S P+
Sbjct: 29 SPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGM 88
Query: 169 FIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDAKSE 228
++ + ++G+S+GG V + ++ PE + L+G G A +A+
Sbjct: 89 RVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG--APMNARPP 146
Query: 229 WITKFRATW 237
+ + A +
Sbjct: 147 ELARLLAFY 155
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 182 LSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
+ N L+GHS GG VA+ A +P+ ++ ++L+ PA
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPA 153
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDS 172
P +++VHG+G + + + LA RF VIA D G G S P T S E+ +
Sbjct: 31 PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPK-TGYSGEQVAVYLHKL 89
Query: 173 FEEWRKAKNLSNFILLGHSLG 193
++ + F L+ H +G
Sbjct: 90 ARQFSPDR---PFDLVAHDIG 107
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDS 172
P +++VHG+G + + + LA RF VIA D G G S P T S E+ +
Sbjct: 31 PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPK-TGYSGEQVAVYLHKL 89
Query: 173 FEEWRKAKNLSNFILLGHSLG 193
++ + F L+ H +G
Sbjct: 90 ARQFSPDR---PFDLVAHDIG 107
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDS 172
P +++VHG+G + + + LA RF VIA D G G S P T S E+ +
Sbjct: 31 PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPK-TGYSGEQVAVYLHKL 89
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLI 212
++ + F L+ H +G + +K+ + L+
Sbjct: 90 ARQFSPDR---PFDLVAHDIGIWNTYPMVVKNQADIARLV 126
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 105 TFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRF--RVIAVDQLGCGGSSRPDFTCKST 162
+ S + P L+++HG G S + A+ SR R++A+D L G ++ +
Sbjct: 31 VYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALD-LRSHGETKVKNPEDLS 89
Query: 163 EETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYA 201
ET A + + E +L+GHS+GG +A A
Sbjct: 90 AETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTA 128
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 182 LSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
+ N L+GH+ GG VA+ A +P+ ++ ++L+ PA
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPA 153
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 182 LSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
+ N L+GH+ GG VA+ A +P+ ++ ++L+ PA
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPA 153
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 115 LIMVHGYGASQGFFFRNF-DALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++++HGY + R + LA +RVI D+ G GGSS+ +T F
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSK-----VNTGYDYDTFAADL 80
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKYALKH 204
+ +L + +L+G S+G A+Y ++
Sbjct: 81 HTVLETLDLRDVVLVGFSMGTGELARYVARY 111
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 111 DSPTLIMVHGYGAS------QGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEE 164
D+P + HG+ S Q FF LA +RV+A D+ G G SS+ +
Sbjct: 21 DAPVIHFHHGWPLSADDWDAQLLFF-----LAHGYRVVAHDRRGHGRSSQ----VWDGHD 71
Query: 165 TEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPE 206
+ + D + + +GHS GG +Y +HPE
Sbjct: 72 MDH-YADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPE 112
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDALAS--RFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDS 172
+I +HG + F+ L++ +++ I +D G G S + +++ I++
Sbjct: 24 IIFLHGLSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNSDP--ISPSTSDNVLETLIEA 81
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
EE A+ FIL GHS GGY+A A + + L P
Sbjct: 82 IEEIIGARR---FILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPV 123
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 136 ASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGY 195
A +RVIA D+ G G SS+P S + + + D + + +L + +L G S GG
Sbjct: 44 AQGYRVIAHDRRGHGRSSQP----WSGNDMDT-YADDLAQLIEHLDLRDAVLFGFSTGGG 98
Query: 196 VAAKYALKH 204
A+Y +H
Sbjct: 99 EVARYIGRH 107
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
LLGHS+GG +A A + P H ++L+ P
Sbjct: 135 LLGHSMGGAIAILTAAERPGHFAGMVLISP 164
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
LLGHS+GG +A A + P H ++L+ P
Sbjct: 118 LLGHSMGGAIAILTAAERPGHFAGMVLISP 147
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 105 TFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRF--RVIAVDQLGCGGSSRPDFTCKST 162
+ S + P L+++HG G S + A+ SR R++A+D L G ++ +
Sbjct: 35 VYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALD-LRSHGETKVKNPEDLS 93
Query: 163 EETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYA 201
ET A + + E +L+GH++GG +A A
Sbjct: 94 AETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIAVHTA 132
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
LLGHS+GG +A A + P H ++L+ P
Sbjct: 136 LLGHSMGGAIAILTAAERPGHFAGMVLISP 165
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDALAS--RFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDS 172
+I +HG + F+ L++ +++ I +D G G S + +++ I++
Sbjct: 24 IIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNSDP--ISPSTSDNVLETLIEA 81
Query: 173 FEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
EE A+ FIL GHS GGY+A A + + L P
Sbjct: 82 IEEIIGARR---FILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPV 123
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASR-FRVIAVDQLGCGGSSRPD--FTCKSTEETEA 167
D L++ G+ + F L + F V+A D G G S PD F E
Sbjct: 23 DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAK 82
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDA 225
+D KA LLG S GG A A K+P ++ +++ G + D+
Sbjct: 83 DAVDLM----KALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASR-FRVIAVDQLGCGGSSRPD--FTCKSTEETEA 167
D L++ G+ + F L + F V+A D G G S PD F E
Sbjct: 23 DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAK 82
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDA 225
+D KA LLG S GG A A K+P ++ +++ G + D+
Sbjct: 83 DAVDLM----KALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDAL-ASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++++HG+ S + R AL + +RVI D+ G G SS+P T +T A +++
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP--TTGYDYDTFAADLNTV 83
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKY 200
E +L + +L+G S+G A+Y
Sbjct: 84 LE---TLDLQDAVLVGFSMGTGEVARY 107
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDAL-ASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++++HG+ S + R AL + +RVI D+ G G SS+P T +T A +++
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP--TTGYDYDTFAADLNTV 84
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKY 200
E +L + +L+G S+G A+Y
Sbjct: 85 LE---TLDLQDAVLVGFSMGTGEVARY 108
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDAL-ASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++++HG+ S + R AL + +RVI D+ G G SS+P T +T A +++
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP--TTGYDYDTFAADLNTV 83
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKY 200
E +L + +L+G S+G A+Y
Sbjct: 84 LE---TLDLQDAVLVGFSMGTGEVARY 107
>pdb|3FLA|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
pdb|3FLA|B Chain B, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
Length = 267
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 115 LIMVHGYGASQGFFFRNFDALASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSFE 174
L+ + G S FFF ALA V+AV G R D + ++ +
Sbjct: 23 LVCLPHAGGSASFFFPLAKALAPAVEVLAVQYPG-----RQDRRHEPPVDSIGGLTNRLL 77
Query: 175 EWRKAKNLSNFILLGHSLGGYVAAKYALKHPE 206
E + L GHS G + + AL+ PE
Sbjct: 78 EVLRPFGDRPLALFGHSXGAIIGYELALRXPE 109
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 114 TLIMVHGYGAS-----QGFFFRNFDALASRFRVIAVDQLGCG--GSSRPDFTCKSTEETE 166
++ + HGY + + F N+ + + V A D G G SS + +
Sbjct: 29 SIALFHGYSFTSXDWDKADLFNNYSKIG--YNVYAPDYPGFGRSASSEKYGIDRGDLKHA 86
Query: 167 AWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPA 217
A FI ++ KA ++ ++ G S GG L++P+ V +I V PA
Sbjct: 87 AEFI---RDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAVAPA 134
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 111 DSPTLIMVHGYGASQGFFFRNFDALASR-FRVIAVDQLGCGGSSRPD--FTCKSTEETEA 167
D L++ G+ + F L + F V+A D G G S PD F E
Sbjct: 23 DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAK 82
Query: 168 WFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAGFSAQSDA 225
+D KA LLG + GG A A K+P ++ +++ G + D+
Sbjct: 83 DAVDLM----KALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDEDS 136
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 115 LIMVHGYGASQGFFFRNFDAL-ASRFRVIAVDQLGCGGSSRPDFTCKSTEETEAWFIDSF 173
++++HG+ S + R AL + +RVI D+ G G SS+P T +T A +++
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP--TTGYDYDTFAADLNTV 83
Query: 174 EEWRKAKNLSNFILLGHSLGGYVAAKY 200
E +L + +L+G S G A+Y
Sbjct: 84 LE---TLDLQDAVLVGFSTGTGEVARY 107
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 287 EESSLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLHSAPEW 331
+E+ L ++ +AAK GE C YI GA + ++H+ E+
Sbjct: 148 KEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEY 192
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 287 EESSLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLHSAPEW 331
+E+ L ++ +AAK GE C YI GA + ++H+ E+
Sbjct: 147 KEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEY 191
>pdb|2FIW|A Chain A, Crystal Structure Of The Gcn5-related N-acetyltransferase:
Aminotransferase, Class-ii From Rhodopseudomonas
Palustris
Length = 172
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 161 STEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHL 211
S E+ EAW + +E + A LS + L +L G +LK P+H+ L
Sbjct: 38 SEEQQEAWASAADDEAKFAARLSGQLTLIATLQGVPVGFASLKGPDHIDXL 88
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 101 INTVTFDSKEDSPTLIMVHGYGASQGFFFRNFDALASRF------RVIAVDQLGCGGSSR 154
I + K DSP L+ HG G + DAL R V++VD
Sbjct: 68 IRVRVYQQKPDSPVLVYYHG-GGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKF 126
Query: 155 PDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYAL----KHPEHVQH 210
P + T+ W ++ EE R + S + G S GG +AA ++ + ++H
Sbjct: 127 PAAVYDCYDATK-WVAENAEELR--IDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKH 183
Query: 211 LILVGPA 217
IL+ P
Sbjct: 184 QILIYPV 190
>pdb|3HXK|A Chain A, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|B Chain B, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|C Chain C, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
pdb|3HXK|D Chain D, Crystal Structure Of A Sugar Hydrolase (Yeeb) From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr108
Length = 276
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 113 PTLIMVHGYGASQGFFFRNFDALASRF-----RVIAVDQLGCGGSSRPDFTCKSTEETEA 167
P +I+ G G Q R D LA F +V+ ++ + +F ++ EE +A
Sbjct: 44 PAIIICPG-GGYQHISQRESDPLALAFLAQGYQVLLLNYTVXNKGTNYNFLSQNLEEVQA 102
Query: 168 WFI---DSFEEWRKAKNLSNFILLGHSLGGYVAAKYA 201
F + +EW+ N LLG S GG++AA Y
Sbjct: 103 VFSLIHQNHKEWQI--NPEQVFLLGCSAGGHLAAWYG 137
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLI----LVGPAGFSAQSDAKSEWITKFRATWKGAIL 242
++GHS+GG+ A AL++ E Q + ++ P+ A + ++ K R W+
Sbjct: 149 IMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDA 208
Query: 243 NHLWESNFTPQ--KIIRGL 259
N L + + Q +I +GL
Sbjct: 209 NSLIQQGYKVQGMRIDQGL 227
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 187 LLGHSLGGYVAAKYALKHPEHVQHLILVGP 216
LLGHS GG +A A + P H +L+ P
Sbjct: 135 LLGHSXGGAIAILTAAERPGHFAGXVLISP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,443,027
Number of Sequences: 62578
Number of extensions: 467685
Number of successful extensions: 1199
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 134
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)