Query 016620
Match_columns 386
No_of_seqs 195 out of 1962
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 5.2E-81 1.1E-85 620.8 41.4 386 1-386 1-386 (386)
2 PRK15409 bifunctional glyoxyla 100.0 3.8E-69 8.2E-74 526.0 36.8 318 14-355 1-320 (323)
3 COG0111 SerA Phosphoglycerate 100.0 1.5E-69 3.3E-74 527.2 33.1 312 13-351 1-313 (324)
4 COG1052 LdhA Lactate dehydroge 100.0 2.3E-68 5E-73 518.5 34.9 318 14-355 1-323 (324)
5 PRK13243 glyoxylate reductase; 100.0 7.4E-67 1.6E-71 512.6 36.5 319 14-355 1-323 (333)
6 TIGR01327 PGDH D-3-phosphoglyc 100.0 2.1E-67 4.6E-72 544.6 34.4 335 17-381 1-335 (525)
7 PRK06487 glycerate dehydrogena 100.0 1.4E-66 3E-71 507.5 35.0 294 30-354 18-317 (317)
8 PRK08410 2-hydroxyacid dehydro 100.0 2.3E-66 5E-71 504.7 34.0 301 17-348 2-311 (311)
9 PRK13581 D-3-phosphoglycerate 100.0 1.3E-66 2.8E-71 538.9 33.9 335 16-381 1-336 (526)
10 PRK11790 D-3-phosphoglycerate 100.0 5.5E-66 1.2E-70 518.6 36.7 316 11-355 6-327 (409)
11 KOG0068 D-3-phosphoglycerate d 100.0 9.3E-66 2E-70 484.5 28.2 336 17-383 8-346 (406)
12 PRK06932 glycerate dehydrogena 100.0 3.9E-65 8.4E-70 496.5 33.3 274 50-348 33-314 (314)
13 PRK07574 formate dehydrogenase 100.0 6.1E-64 1.3E-68 497.4 33.7 306 30-356 61-369 (385)
14 PLN02928 oxidoreductase family 100.0 2.6E-63 5.6E-68 489.6 35.9 323 9-351 12-342 (347)
15 PLN03139 formate dehydrogenase 100.0 1.2E-63 2.5E-68 495.1 33.5 301 30-351 68-371 (386)
16 PRK12480 D-lactate dehydrogena 100.0 3.2E-62 6.9E-67 478.8 34.0 313 16-354 2-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 1.6E-61 3.4E-66 475.0 33.8 317 14-354 2-332 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 8.8E-61 1.9E-65 460.7 26.5 300 36-354 35-335 (336)
19 PRK15469 ghrA bifunctional gly 100.0 2.3E-58 4.9E-63 448.1 31.2 303 17-359 2-312 (312)
20 PRK15438 erythronate-4-phospha 100.0 4.2E-57 9E-62 446.8 30.2 279 16-350 1-283 (378)
21 PRK06436 glycerate dehydrogena 100.0 1.1E-56 2.5E-61 434.0 31.1 262 62-362 34-296 (303)
22 PRK00257 erythronate-4-phospha 100.0 1E-56 2.2E-61 445.3 30.2 286 16-356 1-290 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 7.1E-47 1.5E-51 340.2 16.5 177 128-322 1-178 (178)
24 KOG0067 Transcription factor C 100.0 1.3E-32 2.9E-37 262.7 13.5 290 51-366 62-359 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 2.2E-20 4.8E-25 188.5 22.1 169 94-306 199-368 (476)
26 PF00389 2-Hacid_dh: D-isomer 99.8 3.3E-19 7.1E-24 152.7 16.6 101 18-127 1-101 (133)
27 TIGR02853 spore_dpaA dipicolin 99.8 3.1E-19 6.8E-24 172.0 15.6 200 29-275 16-243 (287)
28 PRK08306 dipicolinate synthase 99.7 3.6E-15 7.7E-20 144.6 17.7 196 29-274 17-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 2E-15 4.4E-20 152.3 10.6 122 161-303 250-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.6 3.5E-14 7.6E-19 142.2 18.1 120 161-300 191-311 (406)
31 PRK05476 S-adenosyl-L-homocyst 99.5 4.5E-12 9.8E-17 127.8 19.3 155 93-284 156-312 (425)
32 PRK13403 ketol-acid reductoiso 99.4 3.1E-13 6.6E-18 130.6 9.5 93 161-270 12-104 (335)
33 PF00670 AdoHcyase_NAD: S-aden 99.4 2.2E-12 4.7E-17 113.1 10.9 103 161-283 19-122 (162)
34 PF03446 NAD_binding_2: NAD bi 99.3 1.7E-11 3.7E-16 108.6 10.2 115 166-297 2-117 (163)
35 COG2084 MmsB 3-hydroxyisobutyr 99.2 5.7E-11 1.2E-15 113.7 11.9 124 166-303 1-126 (286)
36 cd00401 AdoHcyase S-adenosyl-L 99.2 4.8E-10 1E-14 112.9 17.5 105 160-284 197-302 (413)
37 TIGR01505 tartro_sem_red 2-hyd 99.2 1.1E-10 2.4E-15 112.8 11.3 111 167-292 1-113 (291)
38 PRK11559 garR tartronate semia 99.2 1.3E-10 2.7E-15 112.6 10.9 123 166-303 3-127 (296)
39 PRK12490 6-phosphogluconate de 99.1 5.5E-10 1.2E-14 108.6 12.1 114 166-297 1-117 (299)
40 PRK15461 NADH-dependent gamma- 99.1 4.6E-10 1E-14 108.9 11.2 112 166-292 2-115 (296)
41 PRK09599 6-phosphogluconate de 99.0 2.7E-09 5.8E-14 103.8 11.7 111 166-292 1-114 (301)
42 PLN02712 arogenate dehydrogena 99.0 2.5E-09 5.4E-14 114.2 11.8 112 159-287 363-475 (667)
43 PRK05479 ketol-acid reductoiso 99.0 1.9E-09 4.1E-14 105.5 9.8 119 161-304 13-131 (330)
44 PLN02350 phosphogluconate dehy 99.0 3.8E-09 8.3E-14 108.8 12.0 128 167-303 8-138 (493)
45 COG0499 SAM1 S-adenosylhomocys 99.0 2E-09 4.4E-14 104.1 9.3 104 162-285 206-310 (420)
46 PLN02256 arogenate dehydrogena 99.0 1.1E-08 2.3E-13 99.7 14.1 136 163-321 34-174 (304)
47 PRK07417 arogenate dehydrogena 98.9 1.8E-08 3.9E-13 96.9 12.8 137 166-328 1-147 (279)
48 PTZ00142 6-phosphogluconate de 98.9 1.3E-08 2.7E-13 104.7 11.9 128 166-303 2-132 (470)
49 PRK15059 tartronate semialdehy 98.9 1.4E-08 3E-13 98.5 11.4 109 167-291 2-112 (292)
50 PRK08655 prephenate dehydrogen 98.9 2.3E-08 5E-13 102.1 13.1 134 166-321 1-137 (437)
51 PRK08818 prephenate dehydrogen 98.9 4.5E-08 9.8E-13 97.5 14.6 122 163-320 2-130 (370)
52 TIGR00872 gnd_rel 6-phosphoglu 98.8 1.9E-08 4E-13 97.8 11.2 110 166-292 1-113 (298)
53 PRK06545 prephenate dehydrogen 98.8 3.5E-08 7.7E-13 98.3 12.8 138 166-322 1-149 (359)
54 COG0287 TyrA Prephenate dehydr 98.8 5.8E-08 1.3E-12 93.2 13.5 136 165-321 3-145 (279)
55 PLN02858 fructose-bisphosphate 98.8 2.2E-08 4.8E-13 114.4 11.9 112 164-290 3-116 (1378)
56 KOG1370 S-adenosylhomocysteine 98.8 2.1E-08 4.5E-13 95.1 8.6 95 162-276 211-305 (434)
57 TIGR00873 gnd 6-phosphoglucona 98.8 4.7E-08 1E-12 100.5 11.8 125 167-302 1-128 (467)
58 PLN02858 fructose-bisphosphate 98.8 3.1E-08 6.8E-13 113.2 11.5 109 165-288 324-434 (1378)
59 PRK07502 cyclohexadienyl dehyd 98.8 9.2E-08 2E-12 93.2 12.9 145 164-330 5-161 (307)
60 PRK07066 3-hydroxybutyryl-CoA 98.8 1.4E-07 3E-12 92.5 14.1 131 166-300 8-144 (321)
61 PRK14194 bifunctional 5,10-met 98.8 6.8E-07 1.5E-11 86.4 18.3 170 31-275 56-234 (301)
62 TIGR01692 HIBADH 3-hydroxyisob 98.7 4.3E-08 9.3E-13 94.7 9.7 108 170-292 1-110 (288)
63 TIGR00465 ilvC ketol-acid redu 98.7 4.6E-08 1E-12 95.6 9.9 97 163-276 1-97 (314)
64 PRK09260 3-hydroxybutyryl-CoA 98.7 3.9E-07 8.5E-12 88.0 16.3 128 166-299 2-141 (288)
65 PLN02545 3-hydroxybutyryl-CoA 98.7 3.1E-07 6.7E-12 89.0 15.3 117 166-287 5-132 (295)
66 KOG0409 Predicted dehydrogenas 98.7 7.8E-08 1.7E-12 91.4 10.3 119 162-297 32-153 (327)
67 PRK11199 tyrA bifunctional cho 98.7 3.2E-07 6.9E-12 92.0 15.4 148 120-320 67-217 (374)
68 PRK14189 bifunctional 5,10-met 98.7 9E-07 1.9E-11 85.0 17.0 171 31-276 55-234 (285)
69 PRK14619 NAD(P)H-dependent gly 98.7 5.8E-08 1.3E-12 94.7 8.7 82 164-275 3-85 (308)
70 PRK08293 3-hydroxybutyryl-CoA 98.7 9.9E-07 2.1E-11 85.2 17.2 156 166-333 4-170 (287)
71 PRK15182 Vi polysaccharide bio 98.7 2.7E-07 5.8E-12 94.0 13.2 140 166-317 7-173 (425)
72 PLN02712 arogenate dehydrogena 98.6 1.7E-07 3.7E-12 100.3 10.2 137 162-322 49-191 (667)
73 PRK14179 bifunctional 5,10-met 98.6 1.7E-06 3.7E-11 83.0 15.9 170 31-275 55-233 (284)
74 PRK05225 ketol-acid reductoiso 98.6 8E-08 1.7E-12 96.7 6.5 91 161-269 32-128 (487)
75 PF07991 IlvN: Acetohydroxy ac 98.6 1.7E-07 3.6E-12 82.2 7.7 92 163-270 2-93 (165)
76 PF03807 F420_oxidored: NADP o 98.6 2.7E-07 5.8E-12 73.9 8.3 92 167-274 1-96 (96)
77 PRK11064 wecC UDP-N-acetyl-D-m 98.6 9E-07 2E-11 89.9 14.1 109 166-288 4-135 (415)
78 PRK14188 bifunctional 5,10-met 98.6 3.3E-06 7.2E-11 81.6 17.0 170 31-275 55-233 (296)
79 TIGR00518 alaDH alanine dehydr 98.6 2.2E-07 4.8E-12 93.0 9.1 101 163-272 165-267 (370)
80 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 1.7E-06 3.6E-11 79.4 14.2 109 161-291 24-133 (200)
81 PLN02688 pyrroline-5-carboxyla 98.6 1E-06 2.3E-11 83.8 13.3 103 166-287 1-108 (266)
82 PRK07530 3-hydroxybutyryl-CoA 98.5 3.2E-06 7E-11 81.7 16.3 128 166-300 5-144 (292)
83 PRK14175 bifunctional 5,10-met 98.5 5.5E-06 1.2E-10 79.7 17.4 170 31-275 55-233 (286)
84 PRK07819 3-hydroxybutyryl-CoA 98.5 3.4E-06 7.4E-11 81.6 15.1 131 166-301 6-147 (286)
85 PRK05808 3-hydroxybutyryl-CoA 98.5 5.3E-06 1.2E-10 79.8 16.0 119 166-288 4-132 (282)
86 TIGR00561 pntA NAD(P) transhyd 98.5 1.4E-05 3.1E-10 82.6 19.4 108 162-273 161-285 (511)
87 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 7.1E-07 1.5E-11 79.5 8.5 81 162-278 41-122 (168)
88 PRK14806 bifunctional cyclohex 98.5 1.4E-06 3E-11 94.8 12.6 138 166-323 4-153 (735)
89 PRK08507 prephenate dehydrogen 98.4 3.9E-06 8.5E-11 80.5 14.2 130 166-321 1-142 (275)
90 PRK08268 3-hydroxy-acyl-CoA de 98.4 4.4E-06 9.4E-11 87.0 15.4 131 166-303 8-150 (507)
91 PF01488 Shikimate_DH: Shikima 98.4 6.4E-07 1.4E-11 76.9 7.2 102 162-275 9-112 (135)
92 cd01065 NAD_bind_Shikimate_DH 98.4 2.8E-06 6.1E-11 73.9 11.4 114 162-290 16-132 (155)
93 PRK13302 putative L-aspartate 98.4 1.3E-06 2.9E-11 83.7 10.0 112 164-292 5-118 (271)
94 TIGR03026 NDP-sugDHase nucleot 98.4 5.4E-06 1.2E-10 84.2 14.5 118 166-286 1-134 (411)
95 PRK14618 NAD(P)H-dependent gly 98.4 3.2E-06 6.9E-11 83.2 12.2 115 165-288 4-123 (328)
96 PRK07679 pyrroline-5-carboxyla 98.4 1.9E-06 4.2E-11 82.8 10.2 107 164-287 2-112 (279)
97 PRK06035 3-hydroxyacyl-CoA deh 98.4 6.9E-06 1.5E-10 79.5 13.9 130 166-301 4-147 (291)
98 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 5E-06 1.1E-10 86.4 13.1 133 165-304 5-149 (503)
99 PRK07531 bifunctional 3-hydrox 98.3 1.1E-05 2.3E-10 83.9 15.5 120 166-288 5-130 (495)
100 PRK06129 3-hydroxyacyl-CoA deh 98.3 2.7E-05 5.9E-10 76.0 17.2 120 166-288 3-132 (308)
101 PRK15057 UDP-glucose 6-dehydro 98.3 6.3E-06 1.4E-10 83.1 13.1 141 166-316 1-159 (388)
102 PRK06130 3-hydroxybutyryl-CoA 98.3 2E-05 4.3E-10 76.9 15.9 118 166-287 5-128 (311)
103 PRK12491 pyrroline-5-carboxyla 98.3 2.1E-06 4.5E-11 82.5 8.6 103 166-286 3-109 (272)
104 PRK14176 bifunctional 5,10-met 98.3 2.8E-05 6.2E-10 74.7 16.1 169 31-274 61-238 (287)
105 PRK00094 gpsA NAD(P)H-dependen 98.3 3.5E-06 7.7E-11 82.3 9.8 105 166-275 2-108 (325)
106 PRK06928 pyrroline-5-carboxyla 98.2 1.1E-05 2.4E-10 77.6 11.4 105 166-286 2-110 (277)
107 PRK14191 bifunctional 5,10-met 98.2 7E-05 1.5E-09 71.9 16.5 170 31-275 54-232 (285)
108 TIGR01724 hmd_rel H2-forming N 98.2 2.9E-05 6.4E-10 75.2 13.8 114 177-304 32-146 (341)
109 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 6.3E-06 1.4E-10 72.5 8.5 104 167-275 1-106 (157)
110 PRK09424 pntA NAD(P) transhydr 98.2 0.00015 3.2E-09 75.3 19.6 227 30-273 23-286 (509)
111 PRK05472 redox-sensing transcr 98.2 2.1E-06 4.7E-11 79.3 5.2 134 121-288 61-201 (213)
112 PRK14190 bifunctional 5,10-met 98.2 0.00015 3.3E-09 69.7 17.9 171 31-276 55-234 (284)
113 PRK07680 late competence prote 98.1 1.3E-05 2.7E-10 76.9 9.4 104 167-287 2-109 (273)
114 PRK06476 pyrroline-5-carboxyla 98.1 9.3E-06 2E-10 77.1 8.1 104 167-289 2-108 (258)
115 PF02737 3HCDH_N: 3-hydroxyacy 98.1 2E-05 4.3E-10 71.1 9.4 129 167-300 1-139 (180)
116 PRK14173 bifunctional 5,10-met 98.1 0.00016 3.4E-09 69.7 15.9 171 31-276 52-231 (287)
117 PRK14170 bifunctional 5,10-met 98.1 0.00046 9.9E-09 66.3 18.6 170 31-275 54-232 (284)
118 cd05311 NAD_bind_2_malic_enz N 98.0 4.4E-05 9.5E-10 71.3 11.2 165 161-348 21-199 (226)
119 PRK13304 L-aspartate dehydroge 98.0 2E-05 4.4E-10 75.4 9.0 107 166-290 2-113 (265)
120 PRK09287 6-phosphogluconate de 98.0 3E-05 6.5E-10 79.7 10.8 117 176-303 1-120 (459)
121 PF10727 Rossmann-like: Rossma 98.0 7.2E-06 1.6E-10 69.7 5.1 93 164-272 9-104 (127)
122 PRK14178 bifunctional 5,10-met 98.0 1.9E-05 4.1E-10 75.7 8.3 170 31-275 49-227 (279)
123 PRK10792 bifunctional 5,10-met 98.0 3.4E-05 7.3E-10 74.1 10.1 78 161-274 155-233 (285)
124 PLN00203 glutamyl-tRNA reducta 98.0 2.2E-05 4.8E-10 81.7 9.1 102 162-275 263-372 (519)
125 PRK14169 bifunctional 5,10-met 98.0 0.00052 1.1E-08 65.9 17.6 170 31-275 53-231 (282)
126 PF01262 AlaDh_PNT_C: Alanine 98.0 1.6E-05 3.4E-10 70.8 6.8 109 162-272 17-139 (168)
127 PF02882 THF_DHG_CYH_C: Tetrah 98.0 3.4E-05 7.5E-10 68.1 8.7 80 161-276 32-112 (160)
128 PRK14172 bifunctional 5,10-met 98.0 0.00078 1.7E-08 64.6 18.4 186 15-275 34-233 (278)
129 TIGR01035 hemA glutamyl-tRNA r 98.0 1.8E-05 3.8E-10 80.6 7.5 99 162-275 177-280 (417)
130 PLN02616 tetrahydrofolate dehy 98.0 0.00054 1.2E-08 67.6 17.5 172 31-275 126-306 (364)
131 PRK14177 bifunctional 5,10-met 98.0 0.00059 1.3E-08 65.6 17.4 168 31-273 56-232 (284)
132 PRK07634 pyrroline-5-carboxyla 97.9 7.6E-05 1.6E-09 70.1 11.1 108 164-288 3-113 (245)
133 PTZ00431 pyrroline carboxylate 97.9 0.00017 3.7E-09 68.7 13.3 123 165-320 3-129 (260)
134 PRK14171 bifunctional 5,10-met 97.9 0.001 2.2E-08 64.1 18.4 170 31-274 55-233 (288)
135 PRK14193 bifunctional 5,10-met 97.9 0.00078 1.7E-08 64.8 17.5 170 31-275 55-235 (284)
136 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 2.7E-05 5.9E-10 70.5 7.2 149 166-317 1-171 (185)
137 cd05212 NAD_bind_m-THF_DH_Cycl 97.9 0.0001 2.2E-09 63.8 10.3 80 160-275 23-103 (140)
138 PRK14181 bifunctional 5,10-met 97.9 0.00074 1.6E-08 65.0 17.1 187 15-275 28-232 (287)
139 PRK14192 bifunctional 5,10-met 97.9 5E-05 1.1E-09 73.2 9.2 79 161-275 155-234 (283)
140 PLN02897 tetrahydrofolate dehy 97.9 0.00067 1.5E-08 66.7 17.0 172 31-275 109-289 (345)
141 cd05191 NAD_bind_amino_acid_DH 97.9 7.1E-05 1.5E-09 59.0 8.4 67 161-272 19-86 (86)
142 TIGR02371 ala_DH_arch alanine 97.9 6E-05 1.3E-09 74.2 9.3 97 165-275 128-225 (325)
143 PRK14182 bifunctional 5,10-met 97.9 0.001 2.2E-08 64.0 17.1 186 16-275 33-232 (282)
144 cd05213 NAD_bind_Glutamyl_tRNA 97.9 5.1E-05 1.1E-09 74.2 8.6 97 163-273 176-274 (311)
145 COG2085 Predicted dinucleotide 97.9 8.2E-05 1.8E-09 68.0 9.2 94 166-274 2-95 (211)
146 PRK11880 pyrroline-5-carboxyla 97.8 6.1E-05 1.3E-09 71.7 8.7 102 166-287 3-107 (267)
147 COG1023 Gnd Predicted 6-phosph 97.8 0.00016 3.5E-09 67.1 10.6 116 166-299 1-119 (300)
148 COG1250 FadB 3-hydroxyacyl-CoA 97.8 0.00029 6.2E-09 68.5 12.9 146 165-322 3-160 (307)
149 PRK00045 hemA glutamyl-tRNA re 97.8 4.4E-05 9.5E-10 77.9 7.6 98 162-274 179-282 (423)
150 TIGR01546 GAPDH-II_archae glyc 97.8 6.7E-05 1.4E-09 73.8 8.5 101 168-272 1-108 (333)
151 PRK06141 ornithine cyclodeamin 97.8 9E-05 1.9E-09 72.6 9.4 97 163-273 123-220 (314)
152 PRK14167 bifunctional 5,10-met 97.8 0.0016 3.4E-08 63.1 17.5 171 31-275 54-236 (297)
153 PRK08229 2-dehydropantoate 2-r 97.8 0.00014 3E-09 71.8 10.2 118 166-291 3-125 (341)
154 COG0686 Ald Alanine dehydrogen 97.8 5.6E-05 1.2E-09 72.5 6.6 102 162-272 165-268 (371)
155 PF02153 PDH: Prephenate dehyd 97.7 0.00011 2.4E-09 69.9 8.3 122 180-322 1-133 (258)
156 PRK07340 ornithine cyclodeamin 97.7 0.00015 3.2E-09 70.8 9.3 97 163-275 123-220 (304)
157 PRK14183 bifunctional 5,10-met 97.7 0.00017 3.6E-09 69.2 9.0 79 161-275 153-232 (281)
158 PRK11730 fadB multifunctional 97.7 0.00059 1.3E-08 74.1 14.0 130 166-301 314-454 (715)
159 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00035 7.5E-09 63.4 9.9 94 159-273 56-157 (197)
160 PLN02353 probable UDP-glucose 97.7 0.001 2.3E-08 68.7 14.8 148 166-317 2-176 (473)
161 TIGR01915 npdG NADPH-dependent 97.7 0.00036 7.8E-09 64.7 10.4 103 166-275 1-104 (219)
162 TIGR02441 fa_ox_alpha_mit fatt 97.6 0.00057 1.2E-08 74.4 12.8 128 166-300 336-475 (737)
163 PRK12921 2-dehydropantoate 2-r 97.6 0.00028 6.2E-09 68.3 9.3 120 166-292 1-121 (305)
164 TIGR02437 FadB fatty oxidation 97.6 0.00094 2E-08 72.5 13.9 128 166-300 314-453 (714)
165 PRK14982 acyl-ACP reductase; P 97.6 0.00026 5.7E-09 69.9 8.9 101 160-279 150-253 (340)
166 PF02423 OCD_Mu_crystall: Orni 97.6 0.0003 6.5E-09 68.9 9.3 99 166-276 129-228 (313)
167 PRK14186 bifunctional 5,10-met 97.6 0.00032 7E-09 67.8 9.2 171 31-276 55-234 (297)
168 TIGR02440 FadJ fatty oxidation 97.6 0.001 2.2E-08 72.1 14.1 130 166-300 305-445 (699)
169 PRK00258 aroE shikimate 5-dehy 97.6 0.00035 7.5E-09 67.3 9.4 102 162-273 120-222 (278)
170 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00039 8.4E-09 63.1 9.2 107 161-277 24-134 (194)
171 PRK14166 bifunctional 5,10-met 97.6 0.00036 7.7E-09 67.0 9.2 170 31-274 53-231 (282)
172 COG0345 ProC Pyrroline-5-carbo 97.6 0.00043 9.2E-09 66.0 9.6 100 166-287 2-108 (266)
173 TIGR03376 glycerol3P_DH glycer 97.6 0.00042 9.1E-09 68.7 9.9 108 167-276 1-120 (342)
174 PRK06522 2-dehydropantoate 2-r 97.6 0.00043 9.3E-09 66.8 9.8 119 166-292 1-119 (304)
175 COG0059 IlvC Ketol-acid reduct 97.5 0.00029 6.2E-09 67.6 7.8 91 162-268 15-105 (338)
176 PRK08618 ornithine cyclodeamin 97.5 0.00051 1.1E-08 67.6 9.7 97 164-274 126-223 (325)
177 PRK14187 bifunctional 5,10-met 97.5 0.0005 1.1E-08 66.4 9.3 79 161-275 156-235 (294)
178 PRK14180 bifunctional 5,10-met 97.5 0.00052 1.1E-08 65.9 9.3 77 161-273 154-231 (282)
179 PRK06823 ornithine cyclodeamin 97.5 0.00058 1.3E-08 67.0 9.6 96 164-273 127-223 (315)
180 PRK06046 alanine dehydrogenase 97.5 0.00055 1.2E-08 67.5 9.3 95 165-273 129-224 (326)
181 COG0190 FolD 5,10-methylene-te 97.4 0.00044 9.5E-09 66.0 7.9 112 161-328 152-264 (283)
182 TIGR02992 ectoine_eutC ectoine 97.4 0.00072 1.6E-08 66.6 9.7 97 164-273 128-225 (326)
183 KOG2380 Prephenate dehydrogena 97.4 0.00039 8.4E-09 67.5 7.4 134 166-322 53-192 (480)
184 PLN02516 methylenetetrahydrofo 97.4 0.0007 1.5E-08 65.5 9.3 79 161-275 163-242 (299)
185 PRK14184 bifunctional 5,10-met 97.4 0.0006 1.3E-08 65.6 8.8 168 31-273 54-234 (286)
186 PRK14174 bifunctional 5,10-met 97.4 0.00054 1.2E-08 66.3 8.5 172 31-275 54-238 (295)
187 COG0362 Gnd 6-phosphogluconate 97.4 0.007 1.5E-07 60.2 16.2 164 166-350 4-170 (473)
188 PTZ00345 glycerol-3-phosphate 97.4 0.00071 1.5E-08 67.6 9.6 111 165-277 11-134 (365)
189 COG0240 GpsA Glycerol-3-phosph 97.4 0.00085 1.8E-08 65.5 9.7 110 166-278 2-111 (329)
190 PRK11154 fadJ multifunctional 97.4 0.0027 5.8E-08 69.0 14.7 130 166-300 310-450 (708)
191 PRK12557 H(2)-dependent methyl 97.4 0.00074 1.6E-08 67.0 9.4 100 177-287 32-132 (342)
192 TIGR00507 aroE shikimate 5-deh 97.4 0.0013 2.8E-08 63.0 10.2 111 163-289 115-229 (270)
193 PRK14168 bifunctional 5,10-met 97.3 0.0011 2.3E-08 64.3 9.2 80 161-275 157-240 (297)
194 PRK14185 bifunctional 5,10-met 97.3 0.0012 2.6E-08 63.7 9.4 171 31-275 54-236 (293)
195 PRK08291 ectoine utilization p 97.3 0.0014 3.1E-08 64.6 10.0 96 164-272 131-227 (330)
196 COG1712 Predicted dinucleotide 97.3 0.001 2.2E-08 61.4 8.1 97 166-280 1-99 (255)
197 PRK07589 ornithine cyclodeamin 97.3 0.0015 3.2E-08 64.9 9.5 97 165-273 129-226 (346)
198 PRK06407 ornithine cyclodeamin 97.3 0.0013 2.9E-08 64.1 9.0 96 165-273 117-213 (301)
199 PRK12439 NAD(P)H-dependent gly 97.3 0.0012 2.5E-08 65.5 8.8 105 166-275 8-114 (341)
200 PRK13940 glutamyl-tRNA reducta 97.2 0.00088 1.9E-08 68.1 8.0 96 162-273 178-274 (414)
201 TIGR02354 thiF_fam2 thiamine b 97.2 0.0016 3.4E-08 59.8 8.9 107 161-270 17-143 (200)
202 KOG2304 3-hydroxyacyl-CoA dehy 97.2 0.00043 9.3E-09 63.8 4.8 151 162-323 8-175 (298)
203 PRK14620 NAD(P)H-dependent gly 97.2 0.002 4.3E-08 63.3 10.0 105 166-275 1-109 (326)
204 PRK06199 ornithine cyclodeamin 97.2 0.0025 5.3E-08 64.2 10.5 102 165-275 155-262 (379)
205 PRK13301 putative L-aspartate 97.2 0.0023 4.9E-08 60.9 9.5 104 166-289 3-113 (267)
206 COG2423 Predicted ornithine cy 97.2 0.0022 4.7E-08 63.2 9.6 96 165-273 130-226 (330)
207 COG0677 WecC UDP-N-acetyl-D-ma 97.2 0.0071 1.5E-07 60.2 13.0 157 166-332 10-191 (436)
208 TIGR01470 cysG_Nterm siroheme 97.1 0.0012 2.6E-08 60.8 7.1 94 161-271 5-99 (205)
209 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0048 1E-07 57.7 11.2 117 161-292 27-154 (227)
210 PF13241 NAD_binding_7: Putati 97.1 0.00071 1.5E-08 55.2 4.9 89 162-273 4-92 (103)
211 COG0373 HemA Glutamyl-tRNA red 97.1 0.0014 3.1E-08 66.0 7.7 99 162-275 175-277 (414)
212 PRK06249 2-dehydropantoate 2-r 97.1 0.0019 4.2E-08 63.1 8.5 122 165-295 5-128 (313)
213 TIGR01763 MalateDH_bact malate 97.1 0.0027 6E-08 62.0 9.4 128 166-297 2-147 (305)
214 PRK12549 shikimate 5-dehydroge 97.1 0.0058 1.3E-07 59.1 11.5 79 162-247 124-203 (284)
215 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0052 1.1E-07 57.1 10.5 114 161-290 19-143 (217)
216 PTZ00117 malate dehydrogenase; 97.1 0.004 8.6E-08 61.2 10.2 131 163-297 3-151 (319)
217 TIGR01921 DAP-DH diaminopimela 97.0 0.0057 1.2E-07 60.0 11.1 87 166-272 4-91 (324)
218 PRK00676 hemA glutamyl-tRNA re 97.0 0.002 4.4E-08 63.5 7.9 93 162-275 171-264 (338)
219 PRK06718 precorrin-2 dehydroge 97.0 0.0027 5.8E-08 58.3 8.2 77 161-248 6-82 (202)
220 PF01118 Semialdhyde_dh: Semia 97.0 0.0017 3.6E-08 54.5 5.9 96 167-273 1-98 (121)
221 PRK12548 shikimate 5-dehydroge 96.9 0.0056 1.2E-07 59.3 9.9 80 162-246 123-209 (289)
222 cd00650 LDH_MDH_like NAD-depen 96.8 0.0028 6.1E-08 60.4 6.9 183 168-354 1-209 (263)
223 PRK09310 aroDE bifunctional 3- 96.8 0.0049 1.1E-07 63.9 8.5 75 160-247 327-401 (477)
224 PRK13303 L-aspartate dehydroge 96.8 0.0062 1.3E-07 58.2 8.6 109 166-291 2-114 (265)
225 PRK08269 3-hydroxybutyryl-CoA 96.7 0.029 6.3E-07 55.0 13.4 121 176-300 1-140 (314)
226 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0078 1.7E-07 49.7 7.9 107 167-290 2-113 (120)
227 PF01113 DapB_N: Dihydrodipico 96.7 0.011 2.4E-07 49.9 8.7 111 166-287 1-113 (124)
228 PRK09414 glutamate dehydrogena 96.6 0.012 2.5E-07 60.3 10.1 120 161-291 228-361 (445)
229 PLN02477 glutamate dehydrogena 96.6 0.018 3.9E-07 58.4 11.0 117 161-292 202-329 (410)
230 PRK00066 ldh L-lactate dehydro 96.6 0.012 2.5E-07 57.8 9.4 75 164-245 5-82 (315)
231 PRK06444 prephenate dehydrogen 96.6 0.012 2.6E-07 53.8 8.8 91 166-320 1-97 (197)
232 PRK00048 dihydrodipicolinate r 96.5 0.013 2.9E-07 55.7 9.0 66 166-245 2-69 (257)
233 COG1064 AdhP Zn-dependent alco 96.5 0.012 2.6E-07 58.0 8.9 38 164-202 166-203 (339)
234 KOG2653 6-phosphogluconate deh 96.5 0.06 1.3E-06 53.0 13.4 165 166-350 7-174 (487)
235 COG1748 LYS9 Saccharopine dehy 96.5 0.01 2.2E-07 59.6 8.4 111 166-288 2-114 (389)
236 PRK01713 ornithine carbamoyltr 96.5 0.44 9.6E-06 47.2 19.8 106 162-271 153-274 (334)
237 PRK06223 malate dehydrogenase; 96.5 0.019 4.2E-07 55.8 10.2 75 166-244 3-78 (307)
238 smart00859 Semialdhyde_dh Semi 96.5 0.0092 2E-07 49.8 6.9 96 167-273 1-100 (122)
239 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.027 5.9E-07 53.5 10.6 121 161-291 34-171 (254)
240 TIGR00658 orni_carb_tr ornithi 96.5 0.59 1.3E-05 45.7 20.3 77 163-243 146-223 (304)
241 PRK06719 precorrin-2 dehydroge 96.4 0.011 2.4E-07 52.1 7.4 72 160-246 8-80 (157)
242 PTZ00082 L-lactate dehydrogena 96.4 0.014 3.1E-07 57.4 8.9 78 163-244 4-82 (321)
243 TIGR02356 adenyl_thiF thiazole 96.4 0.012 2.6E-07 54.0 7.6 98 161-261 17-135 (202)
244 PRK02255 putrescine carbamoylt 96.4 0.64 1.4E-05 46.1 20.0 78 162-244 151-230 (338)
245 KOG0023 Alcohol dehydrogenase, 96.3 0.009 2E-07 58.0 6.7 37 164-201 181-217 (360)
246 cd05312 NAD_bind_1_malic_enz N 96.3 0.09 1.9E-06 50.5 13.4 192 123-348 4-225 (279)
247 PRK02102 ornithine carbamoyltr 96.3 0.61 1.3E-05 46.1 19.6 79 162-244 152-232 (331)
248 PF00056 Ldh_1_N: lactate/mala 96.3 0.0076 1.6E-07 52.1 5.5 76 166-245 1-78 (141)
249 PF00185 OTCace: Aspartate/orn 96.3 0.047 1E-06 48.1 10.6 104 164-271 1-119 (158)
250 COG1648 CysG Siroheme synthase 96.3 0.0098 2.1E-07 54.9 6.4 95 161-272 8-103 (210)
251 PF03720 UDPG_MGDP_dh_C: UDP-g 96.2 0.029 6.2E-07 45.9 8.4 84 175-271 17-100 (106)
252 PRK12862 malic enzyme; Reviewe 96.2 0.11 2.4E-06 56.8 15.2 186 109-346 161-362 (763)
253 TIGR01809 Shik-DH-AROM shikima 96.2 0.013 2.8E-07 56.6 7.2 79 162-247 122-201 (282)
254 PRK00779 ornithine carbamoyltr 96.2 0.63 1.4E-05 45.4 18.9 74 163-243 150-224 (304)
255 cd05291 HicDH_like L-2-hydroxy 96.2 0.025 5.5E-07 55.1 9.2 101 166-272 1-117 (306)
256 PRK01710 murD UDP-N-acetylmura 96.2 0.032 6.9E-07 57.5 10.4 119 162-289 11-142 (458)
257 TIGR02964 xanthine_xdhC xanthi 96.2 0.022 4.8E-07 53.9 8.4 86 166-289 101-186 (246)
258 PF00208 ELFV_dehydrog: Glutam 96.2 0.034 7.4E-07 52.6 9.6 121 162-291 29-164 (244)
259 COG5322 Predicted dehydrogenas 96.2 0.015 3.2E-07 55.1 6.9 106 159-279 161-268 (351)
260 PRK12749 quinate/shikimate deh 96.1 0.055 1.2E-06 52.4 11.1 80 162-246 121-206 (288)
261 PRK04207 glyceraldehyde-3-phos 96.1 0.032 7E-07 55.3 9.6 80 166-246 2-88 (341)
262 PRK14031 glutamate dehydrogena 96.1 0.031 6.6E-07 57.2 9.5 119 160-288 223-358 (444)
263 PRK12861 malic enzyme; Reviewe 96.1 0.14 3E-06 55.9 14.6 186 109-347 157-359 (764)
264 PRK12475 thiamine/molybdopteri 96.0 0.018 3.9E-07 57.1 7.4 97 161-260 20-139 (338)
265 PRK07232 bifunctional malic en 96.0 0.16 3.5E-06 55.3 15.1 164 108-323 152-326 (752)
266 cd01339 LDH-like_MDH L-lactate 96.0 0.024 5.2E-07 55.1 8.1 74 168-245 1-75 (300)
267 PRK00856 pyrB aspartate carbam 96.0 1.1 2.3E-05 43.9 19.5 65 163-244 154-221 (305)
268 PRK04284 ornithine carbamoyltr 96.0 0.96 2.1E-05 44.8 19.3 77 163-243 153-231 (332)
269 cd00762 NAD_bind_malic_enz NAD 96.0 0.19 4.2E-06 47.6 13.7 192 123-347 4-225 (254)
270 PF03435 Saccharop_dh: Sacchar 96.0 0.0084 1.8E-07 60.2 4.8 74 168-246 1-77 (386)
271 PLN02819 lysine-ketoglutarate 96.0 0.027 5.9E-07 63.2 9.0 75 164-246 568-658 (1042)
272 PRK11579 putative oxidoreducta 96.0 0.051 1.1E-06 53.8 10.2 67 166-247 5-75 (346)
273 TIGR03026 NDP-sugDHase nucleot 95.9 0.048 1E-06 55.4 10.2 90 162-271 310-409 (411)
274 PF02254 TrkA_N: TrkA-N domain 95.9 0.043 9.3E-07 45.0 8.0 89 168-269 1-93 (116)
275 PRK03515 ornithine carbamoyltr 95.9 0.76 1.6E-05 45.5 18.0 79 162-244 153-233 (336)
276 cd05297 GH4_alpha_glucosidase_ 95.9 0.032 7E-07 57.0 8.6 79 166-246 1-84 (423)
277 TIGR01381 E1_like_apg7 E1-like 95.8 0.053 1.1E-06 57.6 10.1 70 111-197 298-370 (664)
278 PRK12562 ornithine carbamoyltr 95.8 1.6 3.4E-05 43.3 19.9 79 162-244 153-233 (334)
279 PRK14106 murD UDP-N-acetylmura 95.8 0.1 2.2E-06 53.4 11.9 119 162-288 2-132 (450)
280 COG0281 SfcA Malic enzyme [Ene 95.8 0.25 5.3E-06 49.9 13.9 196 107-346 165-371 (432)
281 PRK00683 murD UDP-N-acetylmura 95.7 0.024 5.1E-07 57.7 6.9 109 165-288 3-126 (418)
282 PF02558 ApbA: Ketopantoate re 95.7 0.014 3.1E-07 50.3 4.5 121 168-295 1-123 (151)
283 PRK14030 glutamate dehydrogena 95.7 0.073 1.6E-06 54.5 9.9 121 161-291 224-361 (445)
284 cd05292 LDH_2 A subgroup of L- 95.6 0.039 8.5E-07 53.9 7.8 74 166-247 1-78 (308)
285 PF13380 CoA_binding_2: CoA bi 95.6 0.06 1.3E-06 44.9 7.8 100 166-292 1-104 (116)
286 PLN02342 ornithine carbamoyltr 95.6 2.4 5.1E-05 42.3 20.2 76 162-244 191-267 (348)
287 PF13478 XdhC_C: XdhC Rossmann 95.6 0.031 6.7E-07 48.0 6.1 86 168-296 1-86 (136)
288 COG0569 TrkA K+ transport syst 95.5 0.042 9.1E-07 51.3 7.3 78 166-249 1-79 (225)
289 COG0026 PurK Phosphoribosylami 95.5 0.027 5.9E-07 55.7 6.1 65 165-242 1-68 (375)
290 PRK05562 precorrin-2 dehydroge 95.5 0.05 1.1E-06 50.7 7.4 95 160-271 20-115 (223)
291 cd05293 LDH_1 A subgroup of L- 95.5 0.058 1.3E-06 52.9 8.3 103 166-273 4-121 (312)
292 PRK03369 murD UDP-N-acetylmura 95.4 0.035 7.7E-07 57.7 7.1 113 163-288 10-141 (488)
293 PRK10637 cysG siroheme synthas 95.4 0.046 9.9E-07 56.5 7.8 77 161-248 8-84 (457)
294 PLN02968 Probable N-acetyl-gam 95.4 0.068 1.5E-06 53.8 8.7 108 163-283 36-145 (381)
295 PTZ00079 NADP-specific glutama 95.4 0.14 3.1E-06 52.4 10.8 123 160-291 232-370 (454)
296 TIGR00036 dapB dihydrodipicoli 95.3 0.077 1.7E-06 50.8 8.5 74 166-245 2-77 (266)
297 TIGR01850 argC N-acetyl-gamma- 95.2 0.075 1.6E-06 52.8 8.3 101 166-278 1-105 (346)
298 cd00757 ThiF_MoeB_HesA_family 95.2 0.047 1E-06 50.9 6.5 107 161-272 17-143 (228)
299 COG0169 AroE Shikimate 5-dehyd 95.2 0.13 2.9E-06 49.6 9.7 116 162-289 123-242 (283)
300 COG1004 Ugd Predicted UDP-gluc 95.2 0.23 5E-06 49.8 11.4 122 166-289 1-137 (414)
301 PRK08762 molybdopterin biosynt 95.2 0.33 7.2E-06 48.8 12.9 105 161-271 131-256 (376)
302 PRK05708 2-dehydropantoate 2-r 95.2 0.11 2.4E-06 50.7 9.1 125 166-296 3-127 (305)
303 PRK02472 murD UDP-N-acetylmura 95.2 0.19 4.1E-06 51.4 11.3 118 163-289 3-133 (447)
304 COG1004 Ugd Predicted UDP-gluc 95.1 0.11 2.5E-06 51.9 9.1 89 163-270 308-406 (414)
305 PLN02353 probable UDP-glucose 95.0 0.12 2.6E-06 53.6 9.3 115 162-283 321-456 (473)
306 PRK14027 quinate/shikimate deh 94.9 0.36 7.7E-06 46.7 11.7 79 162-246 124-204 (283)
307 PRK08644 thiamine biosynthesis 94.9 0.1 2.2E-06 48.2 7.7 37 161-198 24-61 (212)
308 PRK08306 dipicolinate synthase 94.9 0.25 5.4E-06 48.0 10.7 107 164-293 1-117 (296)
309 TIGR03316 ygeW probable carbam 94.9 0.96 2.1E-05 45.2 15.0 79 162-244 167-253 (357)
310 cd01486 Apg7 Apg7 is an E1-lik 94.9 0.07 1.5E-06 51.8 6.7 101 167-273 1-141 (307)
311 PRK09496 trkA potassium transp 94.9 0.14 3E-06 52.3 9.4 74 166-249 1-78 (453)
312 PRK07688 thiamine/molybdopteri 94.8 0.081 1.8E-06 52.5 7.0 98 161-260 20-139 (339)
313 PLN02520 bifunctional 3-dehydr 94.8 0.11 2.3E-06 54.7 8.3 40 161-201 375-414 (529)
314 PRK09880 L-idonate 5-dehydroge 94.7 0.16 3.4E-06 50.0 9.0 96 163-273 168-267 (343)
315 PRK11891 aspartate carbamoyltr 94.7 0.74 1.6E-05 47.0 14.0 125 88-244 184-316 (429)
316 PRK09496 trkA potassium transp 94.7 0.19 4.2E-06 51.3 10.1 97 163-271 229-330 (453)
317 PRK13814 pyrB aspartate carbam 94.7 1 2.3E-05 44.1 14.6 66 163-243 155-224 (310)
318 TIGR00670 asp_carb_tr aspartat 94.7 0.24 5.2E-06 48.3 10.0 74 162-243 147-223 (301)
319 cd05188 MDR Medium chain reduc 94.7 0.39 8.4E-06 44.4 11.2 98 163-275 133-235 (271)
320 PRK06270 homoserine dehydrogen 94.7 0.14 3E-06 50.8 8.5 118 167-291 4-145 (341)
321 PF03949 Malic_M: Malic enzyme 94.7 0.17 3.7E-06 48.0 8.6 191 122-345 3-223 (255)
322 COG0334 GdhA Glutamate dehydro 94.6 0.15 3.2E-06 51.4 8.5 104 161-277 203-317 (411)
323 TIGR01532 E4PD_g-proteo D-eryt 94.5 0.13 2.8E-06 50.8 7.7 100 167-272 1-120 (325)
324 COG0771 MurD UDP-N-acetylmuram 94.5 0.074 1.6E-06 54.5 6.1 131 163-302 5-156 (448)
325 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.21 4.5E-06 51.0 9.3 71 160-246 315-396 (415)
326 PRK05690 molybdopterin biosynt 94.4 0.15 3.2E-06 48.2 7.7 105 161-271 28-153 (245)
327 PRK13529 malate dehydrogenase; 94.3 1.5 3.3E-05 46.1 15.3 208 107-349 261-503 (563)
328 PRK10669 putative cation:proto 94.3 0.13 2.9E-06 54.3 7.8 92 166-270 418-513 (558)
329 PRK06153 hypothetical protein; 94.3 0.19 4.1E-06 50.5 8.3 110 161-276 172-302 (393)
330 cd05290 LDH_3 A subgroup of L- 94.3 0.13 2.8E-06 50.3 7.1 72 167-245 1-77 (307)
331 cd00300 LDH_like L-lactate deh 94.3 0.25 5.4E-06 48.1 9.1 98 168-272 1-115 (300)
332 PRK03659 glutathione-regulated 94.2 0.18 3.9E-06 53.9 8.7 96 165-273 400-499 (601)
333 TIGR01761 thiaz-red thiazoliny 94.2 0.56 1.2E-05 46.6 11.6 112 166-294 4-119 (343)
334 PRK07806 short chain dehydroge 94.2 0.2 4.3E-06 46.4 8.0 37 163-200 4-41 (248)
335 PRK08300 acetaldehyde dehydrog 94.2 0.31 6.6E-06 47.5 9.5 92 165-272 4-101 (302)
336 cd01483 E1_enzyme_family Super 94.2 0.22 4.7E-06 42.6 7.6 31 167-198 1-32 (143)
337 PRK02006 murD UDP-N-acetylmura 94.1 0.16 3.4E-06 52.9 7.9 119 163-290 5-147 (498)
338 TIGR02355 moeB molybdopterin s 94.1 0.12 2.6E-06 48.7 6.3 98 161-260 20-137 (240)
339 PRK00436 argC N-acetyl-gamma-g 94.0 0.12 2.7E-06 51.2 6.6 99 166-279 3-106 (343)
340 PRK01438 murD UDP-N-acetylmura 94.0 0.14 3.1E-06 52.9 7.3 120 160-288 11-146 (480)
341 PRK05086 malate dehydrogenase; 94.0 0.22 4.8E-06 48.8 8.1 102 166-274 1-120 (312)
342 PRK00141 murD UDP-N-acetylmura 93.9 0.19 4.1E-06 52.1 7.9 116 162-289 12-146 (473)
343 cd01492 Aos1_SUMO Ubiquitin ac 93.9 0.23 5E-06 45.3 7.6 38 161-199 17-55 (197)
344 cd01487 E1_ThiF_like E1_ThiF_l 93.9 0.23 4.9E-06 44.4 7.4 92 167-261 1-112 (174)
345 PLN02602 lactate dehydrogenase 93.9 0.21 4.6E-06 49.7 7.8 102 166-272 38-154 (350)
346 PRK06019 phosphoribosylaminoim 93.8 0.079 1.7E-06 53.1 4.8 36 165-201 2-37 (372)
347 PLN02527 aspartate carbamoyltr 93.7 0.36 7.9E-06 47.2 9.1 74 163-244 149-226 (306)
348 PTZ00317 NADP-dependent malic 93.7 2.4 5.3E-05 44.6 15.4 204 108-347 264-500 (559)
349 PRK04690 murD UDP-N-acetylmura 93.7 0.17 3.7E-06 52.3 7.1 116 163-288 6-139 (468)
350 COG4007 Predicted dehydrogenas 93.7 0.24 5.3E-06 46.8 7.3 97 177-287 33-129 (340)
351 TIGR01851 argC_other N-acetyl- 93.7 0.24 5.1E-06 48.5 7.6 78 166-272 2-80 (310)
352 PRK10206 putative oxidoreducta 93.7 0.49 1.1E-05 46.9 10.1 68 167-247 3-75 (344)
353 PRK07984 enoyl-(acyl carrier p 93.6 0.28 6E-06 46.5 8.0 35 163-198 4-41 (262)
354 PRK03562 glutathione-regulated 93.6 0.29 6.2E-06 52.6 8.8 93 165-270 400-496 (621)
355 PRK00421 murC UDP-N-acetylmura 93.6 0.26 5.7E-06 50.8 8.3 115 163-290 5-133 (461)
356 PRK08328 hypothetical protein; 93.6 0.25 5.3E-06 46.3 7.4 107 161-273 23-151 (231)
357 KOG2711 Glycerol-3-phosphate d 93.6 0.41 8.8E-06 47.0 8.9 109 164-274 20-141 (372)
358 PRK05600 thiamine biosynthesis 93.6 0.26 5.5E-06 49.6 7.9 97 161-260 37-154 (370)
359 PF02629 CoA_binding: CoA bind 93.6 0.2 4.4E-06 40.0 5.9 66 166-246 4-72 (96)
360 PRK01390 murD UDP-N-acetylmura 93.5 0.54 1.2E-05 48.3 10.5 113 162-289 6-139 (460)
361 PRK15182 Vi polysaccharide bio 93.5 0.52 1.1E-05 48.2 10.1 96 160-276 309-416 (425)
362 PRK04523 N-acetylornithine car 93.4 4.8 0.0001 39.9 16.5 79 163-245 166-253 (335)
363 COG0673 MviM Predicted dehydro 93.4 0.29 6.3E-06 47.8 7.9 69 166-247 4-78 (342)
364 PRK12937 short chain dehydroge 93.4 0.37 8E-06 44.4 8.2 37 162-199 2-39 (245)
365 PRK14804 ornithine carbamoyltr 93.4 6.2 0.00013 38.7 17.0 76 162-244 150-226 (311)
366 TIGR03215 ac_ald_DH_ac acetald 93.3 0.53 1.1E-05 45.6 9.3 71 166-247 2-75 (285)
367 PF13460 NAD_binding_10: NADH( 93.3 0.1 2.3E-06 46.0 4.2 70 168-249 1-73 (183)
368 COG0057 GapA Glyceraldehyde-3- 93.2 0.2 4.3E-06 49.1 6.1 45 166-210 2-47 (335)
369 PRK08223 hypothetical protein; 93.1 0.38 8.1E-06 46.6 7.9 99 161-260 23-142 (287)
370 PRK06701 short chain dehydroge 93.1 0.26 5.6E-06 47.4 6.9 39 161-200 42-81 (290)
371 PLN03129 NADP-dependent malic 93.1 3 6.5E-05 44.1 15.0 202 107-348 287-521 (581)
372 PRK04148 hypothetical protein; 93.0 0.39 8.5E-06 41.1 7.0 72 164-246 16-87 (134)
373 PRK04308 murD UDP-N-acetylmura 93.0 0.35 7.7E-06 49.5 8.1 118 163-289 3-135 (445)
374 TIGR01772 MDH_euk_gproteo mala 93.0 0.38 8.3E-06 47.1 7.9 103 167-279 1-121 (312)
375 PF04016 DUF364: Domain of unk 93.0 0.37 8.1E-06 41.9 7.0 84 162-271 8-94 (147)
376 PRK07231 fabG 3-ketoacyl-(acyl 92.9 0.3 6.4E-06 45.1 6.8 39 162-201 2-41 (251)
377 cd01338 MDH_choloroplast_like 92.8 0.6 1.3E-05 46.0 9.1 76 166-246 3-88 (322)
378 PRK08265 short chain dehydroge 92.8 0.35 7.7E-06 45.4 7.2 38 162-200 3-41 (261)
379 COG3288 PntA NAD/NADP transhyd 92.8 0.3 6.6E-06 47.3 6.6 108 161-272 160-281 (356)
380 PRK06392 homoserine dehydrogen 92.7 0.38 8.1E-06 47.5 7.5 121 167-289 2-134 (326)
381 PRK07576 short chain dehydroge 92.7 0.33 7.1E-06 45.8 6.9 40 161-201 5-45 (264)
382 PRK06349 homoserine dehydrogen 92.7 0.66 1.4E-05 47.5 9.5 108 166-291 4-124 (426)
383 PRK05597 molybdopterin biosynt 92.6 0.36 7.8E-06 48.2 7.2 97 161-260 24-141 (355)
384 cd08230 glucose_DH Glucose deh 92.6 0.55 1.2E-05 46.3 8.6 96 163-273 171-270 (355)
385 COG0540 PyrB Aspartate carbamo 92.5 1.9 4E-05 42.0 11.6 73 163-243 156-231 (316)
386 PRK08192 aspartate carbamoyltr 92.5 0.73 1.6E-05 45.7 9.2 75 162-243 156-233 (338)
387 PRK06128 oxidoreductase; Provi 92.4 0.45 9.7E-06 45.8 7.5 36 162-198 52-88 (300)
388 cd08239 THR_DH_like L-threonin 92.4 0.65 1.4E-05 45.3 8.7 37 164-201 163-200 (339)
389 PRK15076 alpha-galactosidase; 92.4 0.49 1.1E-05 48.5 8.1 77 166-246 2-85 (431)
390 COG1893 ApbA Ketopantoate redu 92.4 0.57 1.2E-05 45.8 8.2 152 166-325 1-154 (307)
391 PF00044 Gp_dh_N: Glyceraldehy 92.4 0.22 4.9E-06 43.5 4.8 44 167-210 2-46 (151)
392 PTZ00325 malate dehydrogenase; 92.4 0.3 6.4E-06 48.1 6.2 77 162-246 5-86 (321)
393 cd01337 MDH_glyoxysomal_mitoch 92.3 0.58 1.3E-05 45.9 8.2 100 166-273 1-118 (310)
394 PRK11863 N-acetyl-gamma-glutam 92.3 0.43 9.4E-06 46.8 7.2 78 166-272 3-81 (313)
395 PF03447 NAD_binding_3: Homose 92.2 0.26 5.7E-06 40.6 4.9 98 172-288 1-109 (117)
396 PRK07370 enoyl-(acyl carrier p 92.2 0.49 1.1E-05 44.5 7.4 35 162-197 3-40 (258)
397 PLN00106 malate dehydrogenase 92.2 0.31 6.7E-06 48.0 6.1 105 164-275 17-138 (323)
398 TIGR02717 AcCoA-syn-alpha acet 92.1 1 2.2E-05 46.5 10.1 109 163-294 5-125 (447)
399 PRK12550 shikimate 5-dehydroge 92.1 0.9 1.9E-05 43.7 9.1 36 165-201 122-158 (272)
400 PF05368 NmrA: NmrA-like famil 92.1 0.3 6.4E-06 45.1 5.6 72 168-247 1-75 (233)
401 PLN02586 probable cinnamyl alc 92.0 0.86 1.9E-05 45.2 9.2 96 164-273 183-279 (360)
402 PRK01368 murD UDP-N-acetylmura 92.0 0.35 7.5E-06 49.9 6.5 112 164-289 5-129 (454)
403 cd08293 PTGR2 Prostaglandin re 91.9 0.96 2.1E-05 44.1 9.3 92 165-272 155-254 (345)
404 cd08281 liver_ADH_like1 Zinc-d 91.9 0.76 1.6E-05 45.7 8.7 37 164-201 191-228 (371)
405 cd05294 LDH-like_MDH_nadp A la 91.8 0.38 8.1E-06 47.1 6.2 77 166-246 1-82 (309)
406 TIGR01087 murD UDP-N-acetylmur 91.8 1.5 3.2E-05 44.7 10.8 116 167-290 1-128 (433)
407 PLN02819 lysine-ketoglutarate 91.7 0.42 9.1E-06 54.0 7.2 106 164-272 202-338 (1042)
408 PRK05442 malate dehydrogenase; 91.7 0.58 1.3E-05 46.2 7.4 75 166-245 5-89 (326)
409 PLN00112 malate dehydrogenase 91.6 1.6 3.5E-05 44.8 10.8 112 166-283 101-235 (444)
410 PLN02214 cinnamoyl-CoA reducta 91.4 0.49 1.1E-05 46.7 6.7 83 162-245 7-90 (342)
411 PRK08415 enoyl-(acyl carrier p 91.4 0.66 1.4E-05 44.2 7.4 36 163-199 3-41 (274)
412 PRK07411 hypothetical protein; 91.4 0.49 1.1E-05 47.8 6.7 101 161-264 34-155 (390)
413 PLN02272 glyceraldehyde-3-phos 91.4 0.31 6.8E-06 49.5 5.2 45 166-210 86-131 (421)
414 PRK03803 murD UDP-N-acetylmura 91.4 2 4.2E-05 44.1 11.3 115 164-288 5-132 (448)
415 TIGR01161 purK phosphoribosyla 91.3 0.46 9.9E-06 47.1 6.3 33 167-200 1-33 (352)
416 PRK14874 aspartate-semialdehyd 91.2 0.54 1.2E-05 46.5 6.7 91 165-273 1-95 (334)
417 TIGR01759 MalateDH-SF1 malate 91.2 0.61 1.3E-05 46.0 7.0 74 167-246 5-89 (323)
418 cd08296 CAD_like Cinnamyl alco 91.1 1.3 2.8E-05 43.1 9.3 36 164-200 163-198 (333)
419 TIGR03451 mycoS_dep_FDH mycoth 91.1 1.2 2.6E-05 44.0 9.1 37 164-201 176-213 (358)
420 TIGR01202 bchC 2-desacetyl-2-h 91.1 0.74 1.6E-05 44.6 7.4 87 164-272 144-231 (308)
421 PRK07877 hypothetical protein; 91.0 0.81 1.8E-05 49.9 8.3 98 161-261 103-220 (722)
422 cd05283 CAD1 Cinnamyl alcohol 91.0 1 2.2E-05 43.9 8.4 96 163-273 168-264 (337)
423 TIGR01758 MDH_euk_cyt malate d 91.0 0.53 1.1E-05 46.4 6.3 75 167-246 1-85 (324)
424 cd00704 MDH Malate dehydrogena 90.9 1.3 2.8E-05 43.7 9.0 109 167-282 2-134 (323)
425 PLN02948 phosphoribosylaminoim 90.9 0.71 1.5E-05 49.1 7.7 38 162-200 19-56 (577)
426 TIGR03201 dearomat_had 6-hydro 90.9 1.1 2.4E-05 44.1 8.6 37 164-201 166-202 (349)
427 TIGR02825 B4_12hDH leukotriene 90.8 1.4 3E-05 42.7 9.2 94 164-273 138-238 (325)
428 PF02056 Glyco_hydro_4: Family 90.8 0.82 1.8E-05 41.3 6.8 118 167-286 1-158 (183)
429 TIGR03366 HpnZ_proposed putati 90.8 1.5 3.2E-05 41.8 9.1 36 164-200 120-156 (280)
430 COG0039 Mdh Malate/lactate deh 90.7 0.5 1.1E-05 46.3 5.7 78 166-249 1-84 (313)
431 TIGR02853 spore_dpaA dipicolin 90.6 2.2 4.7E-05 41.3 10.1 107 165-294 1-117 (287)
432 PRK12742 oxidoreductase; Provi 90.6 1.4 3.1E-05 40.2 8.6 36 162-198 3-39 (237)
433 PRK06114 short chain dehydroge 90.6 0.52 1.1E-05 43.9 5.7 38 162-200 5-43 (254)
434 PRK03806 murD UDP-N-acetylmura 90.6 0.84 1.8E-05 46.6 7.7 114 163-288 4-129 (438)
435 PLN02514 cinnamyl-alcohol dehy 90.5 1.3 2.9E-05 43.8 8.8 97 163-273 179-276 (357)
436 PRK08324 short chain dehydroge 90.5 0.72 1.6E-05 50.1 7.4 40 161-201 418-458 (681)
437 cd08234 threonine_DH_like L-th 90.4 1.1 2.5E-05 43.2 8.1 98 163-275 158-260 (334)
438 PLN02178 cinnamyl-alcohol dehy 90.3 1.1 2.4E-05 44.8 8.2 96 164-273 178-274 (375)
439 COG1063 Tdh Threonine dehydrog 90.2 2.3 5E-05 42.2 10.3 95 165-274 169-271 (350)
440 cd08237 ribitol-5-phosphate_DH 90.2 1.9 4.1E-05 42.4 9.6 93 164-272 163-256 (341)
441 PF00070 Pyr_redox: Pyridine n 90.2 0.45 9.7E-06 36.4 4.1 33 167-200 1-33 (80)
442 COG2344 AT-rich DNA-binding pr 90.2 0.57 1.2E-05 42.4 5.1 67 167-246 86-156 (211)
443 PRK07904 short chain dehydroge 90.1 1.1 2.4E-05 42.0 7.5 38 164-201 7-45 (253)
444 PRK07523 gluconate 5-dehydroge 90.1 0.95 2E-05 42.1 7.0 39 162-201 7-46 (255)
445 PLN02383 aspartate semialdehyd 90.1 1.1 2.4E-05 44.5 7.8 89 164-272 6-100 (344)
446 KOG4230 C1-tetrahydrofolate sy 90.0 0.77 1.7E-05 48.0 6.6 134 161-346 158-294 (935)
447 COG0677 WecC UDP-N-acetyl-D-ma 90.0 1.8 3.9E-05 43.6 9.0 96 159-274 316-421 (436)
448 cd08260 Zn_ADH6 Alcohol dehydr 89.9 1.7 3.6E-05 42.4 8.9 96 164-274 165-266 (345)
449 PRK12747 short chain dehydroge 89.8 1.5 3.4E-05 40.6 8.2 34 163-197 2-36 (252)
450 TIGR01771 L-LDH-NAD L-lactate 89.8 0.72 1.6E-05 44.9 6.1 99 170-272 1-113 (299)
451 PRK06172 short chain dehydroge 89.7 0.71 1.5E-05 42.8 5.9 39 162-201 4-43 (253)
452 PLN03154 putative allyl alcoho 89.7 1.9 4.2E-05 42.5 9.2 38 163-201 157-195 (348)
453 PLN02740 Alcohol dehydrogenase 89.7 1.7 3.7E-05 43.4 9.0 38 163-201 197-235 (381)
454 PRK07985 oxidoreductase; Provi 89.7 1.1 2.3E-05 43.2 7.2 36 162-198 46-82 (294)
455 PRK05866 short chain dehydroge 89.5 0.89 1.9E-05 43.7 6.5 40 160-200 35-75 (293)
456 smart00846 Gp_dh_N Glyceraldeh 89.5 0.77 1.7E-05 40.0 5.5 31 167-197 2-33 (149)
457 PRK10537 voltage-gated potassi 89.5 1.5 3.3E-05 44.4 8.4 91 164-269 239-333 (393)
458 cd08295 double_bond_reductase_ 89.5 2.2 4.7E-05 41.6 9.3 38 163-201 150-188 (338)
459 PF00899 ThiF: ThiF family; I 89.4 0.47 1E-05 40.2 4.0 34 165-199 2-36 (135)
460 PLN03209 translocon at the inn 89.3 0.81 1.8E-05 48.4 6.4 38 163-201 78-116 (576)
461 PRK06182 short chain dehydroge 89.2 1.2 2.5E-05 42.1 6.9 37 164-201 2-39 (273)
462 PRK04663 murD UDP-N-acetylmura 89.1 4.4 9.5E-05 41.4 11.6 114 163-288 4-132 (438)
463 cd05298 GH4_GlvA_pagL_like Gly 89.1 1.9 4.1E-05 44.3 8.7 125 166-294 1-165 (437)
464 PLN02427 UDP-apiose/xylose syn 89.0 0.72 1.6E-05 46.1 5.6 41 159-200 8-50 (386)
465 cd08233 butanediol_DH_like (2R 89.0 2.8 6E-05 41.1 9.7 96 163-273 171-273 (351)
466 PRK12826 3-ketoacyl-(acyl-carr 89.0 0.96 2.1E-05 41.6 6.1 38 162-200 3-41 (251)
467 PRK15425 gapA glyceraldehyde-3 89.0 2.1 4.6E-05 42.3 8.6 33 166-198 3-35 (331)
468 COG0002 ArgC Acetylglutamate s 88.9 1.4 3E-05 43.6 7.3 102 166-277 3-106 (349)
469 PRK15057 UDP-glucose 6-dehydro 88.9 1.1 2.4E-05 45.3 6.9 65 163-245 294-368 (388)
470 cd01491 Ube1_repeat1 Ubiquitin 88.9 3.4 7.4E-05 40.0 9.9 107 161-272 15-137 (286)
471 PRK07326 short chain dehydroge 88.9 0.99 2.2E-05 41.3 6.1 38 163-201 4-42 (237)
472 cd08245 CAD Cinnamyl alcohol d 88.9 2.4 5.3E-05 40.8 9.2 96 163-273 161-257 (330)
473 cd05296 GH4_P_beta_glucosidase 88.8 3.2 7E-05 42.4 10.2 127 166-295 1-166 (419)
474 cd01336 MDH_cytoplasmic_cytoso 88.8 0.93 2E-05 44.7 6.1 76 167-246 4-88 (325)
475 cd08301 alcohol_DH_plants Plan 88.7 2.4 5.2E-05 42.0 9.1 38 163-201 186-224 (369)
476 PF05222 AlaDh_PNT_N: Alanine 88.6 5.1 0.00011 34.3 9.8 65 227-301 55-119 (136)
477 cd08294 leukotriene_B4_DH_like 88.5 2.6 5.6E-05 40.5 9.0 37 164-201 143-180 (329)
478 PRK02705 murD UDP-N-acetylmura 88.4 1.3 2.7E-05 45.5 7.1 114 167-288 2-133 (459)
479 PRK06728 aspartate-semialdehyd 88.4 1.6 3.4E-05 43.5 7.4 164 164-352 4-188 (347)
480 cd08269 Zn_ADH9 Alcohol dehydr 88.4 2.9 6.2E-05 39.8 9.2 96 163-273 128-230 (312)
481 PRK13376 pyrB bifunctional asp 88.3 2.4 5.2E-05 44.5 9.0 102 162-271 171-292 (525)
482 KOG0022 Alcohol dehydrogenase, 88.3 0.65 1.4E-05 45.3 4.5 38 163-201 191-229 (375)
483 TIGR01757 Malate-DH_plant mala 88.3 3.5 7.6E-05 41.7 9.9 76 166-245 45-129 (387)
484 PF04321 RmlD_sub_bind: RmlD s 88.3 0.6 1.3E-05 44.9 4.3 32 166-198 1-33 (286)
485 CHL00194 ycf39 Ycf39; Provisio 88.3 1.2 2.6E-05 43.2 6.5 70 166-245 1-73 (317)
486 PRK05867 short chain dehydroge 88.2 1.1 2.5E-05 41.5 6.1 39 162-201 6-45 (253)
487 TIGR02822 adh_fam_2 zinc-bindi 88.1 2.3 5E-05 41.6 8.4 91 164-273 165-255 (329)
488 PTZ00188 adrenodoxin reductase 88.1 2.5 5.3E-05 44.1 8.8 89 159-247 33-137 (506)
489 PRK08589 short chain dehydroge 88.0 0.99 2.1E-05 42.7 5.6 36 162-198 3-39 (272)
490 cd08277 liver_alcohol_DH_like 87.9 3.3 7.1E-05 41.0 9.5 38 163-201 183-221 (365)
491 PRK06125 short chain dehydroge 87.9 1.5 3.3E-05 40.9 6.8 39 162-201 4-43 (259)
492 PRK07403 glyceraldehyde-3-phos 87.9 2.3 5E-05 42.1 8.2 33 167-199 3-37 (337)
493 PRK08040 putative semialdehyde 87.9 1.2 2.6E-05 44.1 6.2 89 164-272 3-97 (336)
494 PRK08217 fabG 3-ketoacyl-(acyl 87.9 1.6 3.4E-05 40.2 6.7 37 163-200 3-40 (253)
495 TIGR02818 adh_III_F_hyde S-(hy 87.9 2.8 6E-05 41.7 8.9 38 163-201 184-222 (368)
496 PRK10309 galactitol-1-phosphat 87.8 3.9 8.4E-05 40.0 9.8 38 163-201 159-197 (347)
497 PRK14573 bifunctional D-alanyl 87.7 3.8 8.2E-05 45.5 10.7 112 166-290 5-130 (809)
498 PRK07200 aspartate/ornithine c 87.7 2.2 4.8E-05 43.2 8.0 79 162-244 184-270 (395)
499 PRK06196 oxidoreductase; Provi 87.7 1.7 3.6E-05 42.2 7.1 39 162-201 23-62 (315)
500 PRK08664 aspartate-semialdehyd 87.7 2.7 5.9E-05 41.8 8.7 32 166-197 4-36 (349)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.2e-81 Score=620.78 Aligned_cols=386 Identities=94% Similarity=1.428 Sum_probs=337.1
Q ss_pred CCCceeEEeeCCCCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 016620 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (386)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~ 80 (386)
|++++++++-+|+.+++|+++.+++++.+.+.|++.++++++....+..++.+++.+.+.+++|++++...+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999998876435677877666776433333346888998887556999998877789999999
Q ss_pred HhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016620 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (386)
Q Consensus 81 ~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g 160 (386)
+++++++|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|......|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99987779999999999999999999999999999999999999999999999999999999999999998886544567
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
+++.|+||||||+|.||+.+|++++++|||+|++||++.......+...++..+...+.....+....+|+|++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998654322111111111111111111122235899999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH 320 (386)
++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+++++||++|||++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCCCCC
Q 016620 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL 386 (386)
Q Consensus 321 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (386)
+||+|.++++++.+.+++||.+|++|+++.|.||.++||+.+++.+|.++|++++.++||+|||.|
T Consensus 321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (386)
T PLN02306 321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSKL 386 (386)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccCC
Confidence 999999999999999999999999999999999988899999999999999999999999999986
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=3.8e-69 Score=525.98 Aligned_cols=318 Identities=33% Similarity=0.491 Sum_probs=276.3
Q ss_pred CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (386)
Q Consensus 14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~ 93 (386)
++++|+++.+++++ ..+.|++. +++.... .....+.+++.+.+. ++|++++.. .++++++++++|+| |+|++.
T Consensus 1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~ 73 (323)
T PRK15409 1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI 73 (323)
T ss_pred CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence 46789999888653 46677654 4554322 112236678888776 599998764 47999999999998 999999
Q ss_pred cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (386)
Q Consensus 94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~ 173 (386)
|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|..+......|.+|+|+|+||||+
T Consensus 74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~ 153 (323)
T PRK15409 74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM 153 (323)
T ss_pred ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999864432223578999999999999
Q ss_pred ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620 174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (386)
Q Consensus 174 G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~ 252 (386)
|+||+.+|+++ + +|||+|++||++....... . .+. ...+++|++++||+|++|+|+|++|++
T Consensus 154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~----------~-----~~~-~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE----------R-----FNA-RYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH----------h-----cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 99999999996 6 9999999999875332110 0 011 246999999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG 331 (386)
Q Consensus 253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~ 331 (386)
+||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++ ++|||++|||++|||+||.|.+++.+
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 46899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCC
Q 016620 332 MATLAALNVLGKIKGYPIWGNPNQ 355 (386)
Q Consensus 332 ~~~~~~~ni~~~~~g~~~~~~v~~ 355 (386)
+.+.+++||.+|++|+++.|.||.
T Consensus 297 ~~~~~~~ni~~~~~g~~~~~~vn~ 320 (323)
T PRK15409 297 MAACAVDNLIDALQGKVEKNCVNP 320 (323)
T ss_pred HHHHHHHHHHHHHcCCCCCcccCc
Confidence 999999999999999999999984
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-69 Score=527.16 Aligned_cols=312 Identities=36% Similarity=0.505 Sum_probs=274.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620 13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (386)
Q Consensus 13 ~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~ 92 (386)
+++++++++.++.++.| +.+.+. .+.++.... ..+.+++.+.+. ++|++++ ...+++++.++.+++| |+|++
T Consensus 1 ~~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~~~--~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~ 72 (324)
T COG0111 1 KMMIKVLVTDPLAPDAL-EELLAA-YDVEVPDGP--DLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGR 72 (324)
T ss_pred CCcceeeccCccCHHHH-HHHHhc-ccccccccc--ccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence 36788999998888665 444444 333332222 346667777776 5999888 7778999999999988 99999
Q ss_pred ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (386)
Q Consensus 93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG 172 (386)
.|+|+|+||+++++++||.|+|+|++|+.+||||+++++|++.|+++.+++.+++|.|.. ..+.|.+|+||||||||
T Consensus 73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG 149 (324)
T COG0111 73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG 149 (324)
T ss_pred ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999763 34567899999999999
Q ss_pred cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (386)
Q Consensus 173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~ 252 (386)
+|.||+.+|+++ ++|||+|++|||+....... ..+.....+|++++++||||++|+|+|++|++
T Consensus 150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 999999999997 89999999999965542111 11233457899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 331 (386)
Q Consensus 253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~ 331 (386)
|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+|+.|.++.++
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 016620 332 MATLAALNVLGKIKGYPIWG 351 (386)
Q Consensus 332 ~~~~~~~ni~~~~~g~~~~~ 351 (386)
+...+++|+.+|++|+++.|
T Consensus 294 ~~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 294 VAEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999655
No 4
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.3e-68 Score=518.45 Aligned_cols=318 Identities=39% Similarity=0.536 Sum_probs=276.3
Q ss_pred CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (386)
Q Consensus 14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~ 93 (386)
+|++++++..++++ ..+.+... ++++........ .. ++.+... ++|++++....+++.+.++++|+| |+|+..
T Consensus 1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~ 73 (324)
T COG1052 1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR 73 (324)
T ss_pred CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence 35667888888875 35656544 565554433121 22 4555554 599999998889999999999987 999999
Q ss_pred cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCC-CCCcccccccCCCeEEEEe
Q 016620 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIG 172 (386)
Q Consensus 94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w-~~~~~~g~~l~g~~vgIvG 172 (386)
|+||||||+++|+++||.|+|+|++++++|||+++++||++.|++..+++++++|.|..| ......|++++|||+||||
T Consensus 74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG 153 (324)
T COG1052 74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG 153 (324)
T ss_pred ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999755 2334567899999999999
Q ss_pred cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (386)
Q Consensus 173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~ 252 (386)
+|+||+++|+++ ++|||+|+||||++.+..++. ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus 154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence 999999999997 699999999999875322210 112 244699999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCC---eEEcCCCCCCcHHH
Q 016620 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT 328 (386)
Q Consensus 253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~ 328 (386)
+||++.|++||+|++|||+|||++||++||++||++|+|.||++|||+.||.+ +++|++++| |++|||+||+|.++
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea 296 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA 296 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999995 578887777 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620 329 REGMATLAALNVLGKIKGYPIWGNPNQ 355 (386)
Q Consensus 329 ~~~~~~~~~~ni~~~~~g~~~~~~v~~ 355 (386)
+.+|.+.+++|+..|++|++..+.||.
T Consensus 297 ~~~m~~~~~~nl~~~~~g~~~~~~v~~ 323 (324)
T COG1052 297 RKAMAELALENLEAFFDGGVPPNEVNP 323 (324)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999999999874
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=7.4e-67 Score=512.64 Aligned_cols=319 Identities=43% Similarity=0.645 Sum_probs=277.9
Q ss_pred CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (386)
Q Consensus 14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~ 93 (386)
|++||+++.++++ ...+.+++. +++... ......+.+++.+.+. ++|++++...+++++++++++|+| |+|++.
T Consensus 1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~ 74 (333)
T PRK13243 1 MKPKVFITREIPE-NGIEMLEEH-FEVEVW-EDEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANY 74 (333)
T ss_pred CCceEEEECCCCH-HHHHHHhcC-ceEEEe-cCCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence 4578888887765 345667654 355433 2222346778887776 599998876668999999999988 999999
Q ss_pred cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 016620 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG 169 (386)
Q Consensus 94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~----w~~~~~~g~~l~g~~vg 169 (386)
|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.. |......|++|+|+|||
T Consensus 75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg 154 (333)
T PRK13243 75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG 154 (333)
T ss_pred CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999864 22222356899999999
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (386)
Q Consensus 170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~ 249 (386)
|||+|.||+.+|++| ++|||+|++|||+....... ..+ . ...++++++++||+|++|+|+|++
T Consensus 155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~~-----~-~~~~l~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------ELG-----A-EYRPLEELLRESDFVSLHVPLTKE 217 (333)
T ss_pred EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------HcC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence 999999999999997 79999999999976432110 001 1 236899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 016620 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329 (386)
Q Consensus 250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~ 329 (386)
|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++++|||++|||++|||+||+|.++.
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~ 297 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR 297 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620 330 EGMATLAALNVLGKIKGYPIWGNPNQ 355 (386)
Q Consensus 330 ~~~~~~~~~ni~~~~~g~~~~~~v~~ 355 (386)
.++.+.+++||.+|++|+++.|.||.
T Consensus 298 ~~~~~~~~~ni~~~~~g~~~~~~v~~ 323 (333)
T PRK13243 298 EGMAELVAENLIAFKRGEVPPTLVNR 323 (333)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccCH
Confidence 99999999999999999999999974
No 6
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=2.1e-67 Score=544.58 Aligned_cols=335 Identities=35% Similarity=0.512 Sum_probs=297.6
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcccc
Q 016620 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (386)
Q Consensus 17 ~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G 96 (386)
||+++.++.++ ..+.+++.++++... . ..+++++.+.+. ++|+++++..+++++++++++++| |+|++.|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 46777777653 467777666666532 2 236788888887 599999887778999999999988 999999999
Q ss_pred ccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 016620 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (386)
Q Consensus 97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I 176 (386)
+|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.. ..+.|.+|+|+||||||+|.|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---KAFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---cccCccccCCCEEEEECCCHH
Confidence 99999999999999999999999999999999999999999999999999998753 234578999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (386)
Q Consensus 177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~ 256 (386)
|+.+|++| ++|||+|++|||+....... . .+.....+++|++++||+|++|+|+|++|+++|++
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 79999999999864321110 0 11222358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHH
Q 016620 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA 336 (386)
Q Consensus 257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~ 336 (386)
+.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+||.|.++++++...+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~ 293 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV 293 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCC
Q 016620 337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGL 381 (386)
Q Consensus 337 ~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (386)
++|+.+|++|+++.|.||. |.++++ .++.++||+.|++++|+
T Consensus 294 ~~ni~~~~~g~~~~~~vn~--~~~~~~-~~~~~~~~~~la~riG~ 335 (525)
T TIGR01327 294 AEQVLDALKGLPVPNAVNA--PGIDAD-VMEKLKPYLDLAEKLGK 335 (525)
T ss_pred HHHHHHHHcCCCCCceeeC--CCCCch-hhhhhhhHHHHHHHHHH
Confidence 9999999999999999988 999996 89999999999999986
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-66 Score=507.51 Aligned_cols=294 Identities=29% Similarity=0.350 Sum_probs=258.2
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCC
Q 016620 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109 (386)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~g 109 (386)
.+.+++...+++... ..+.+++.+.+. ++|+++++ ..++++++++++++| |+|++.|+|+|++|+++++++|
T Consensus 18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g 89 (317)
T PRK06487 18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG 89 (317)
T ss_pred hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence 455655544554432 225678888876 59988876 457899999999988 9999999999999999999999
Q ss_pred cEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
Q Consensus 110 I~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~ 186 (386)
|.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|... .+.+++|.|+||||||+|.||+.+|+++ +
T Consensus 90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~ 168 (317)
T PRK06487 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E 168 (317)
T ss_pred CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999998755321 1235789999999999999999999997 7
Q ss_pred cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCc
Q 016620 187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266 (386)
Q Consensus 187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ga 266 (386)
+|||+|++||++.... .....+|+|++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus 169 ~fgm~V~~~~~~~~~~---------------------~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA---------------------RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred hCCCEEEEECCCCCcc---------------------cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 9999999999864220 0123589999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCC--CCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 016620 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVLGK 343 (386)
Q Consensus 267 ilIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~ 343 (386)
+|||+|||++||++||++||++|+|.||+||||++||++. +|||+ +|||++|||+||+|.++++++...+++||.+|
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~ 307 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAF 307 (317)
T ss_pred EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 68995 89999999999999999999999999999999
Q ss_pred HcCCCCCCCCC
Q 016620 344 IKGYPIWGNPN 354 (386)
Q Consensus 344 ~~g~~~~~~v~ 354 (386)
++|+|+ +.||
T Consensus 308 ~~g~~~-~~v~ 317 (317)
T PRK06487 308 FAGKPL-RVVS 317 (317)
T ss_pred HcCCCC-cCCC
Confidence 999876 4444
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-66 Score=504.68 Aligned_cols=301 Identities=29% Similarity=0.421 Sum_probs=258.5
Q ss_pred EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620 17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (386)
Q Consensus 17 ~vlvt~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~ 94 (386)
|+++..+ +++. ..+.+++.+ ++.... . .+.+++.+.+. ++|+++++ ..++++++++++|+| |+|++.|
T Consensus 2 ki~~~~~~~~~~~-~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~ 71 (311)
T PRK08410 2 KIVILDAKTLGDK-DLSVFEEFG-DFQIYP--T--TSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA 71 (311)
T ss_pred eEEEEecCCCChh-hHHHHhhCc-eEEEeC--C--CCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence 4544433 4433 356676653 444322 1 25678877776 59998876 557999999999988 9999999
Q ss_pred ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEEE
Q 016620 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI 171 (386)
Q Consensus 95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~---~~g~~l~g~~vgIv 171 (386)
+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+.... ..+++|+|+|||||
T Consensus 72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi 151 (311)
T PRK08410 72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII 151 (311)
T ss_pred cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999986432111 12478999999999
Q ss_pred ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (386)
Q Consensus 172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~ 251 (386)
|+|+||+.+|+++ ++|||+|++|||+..... ..+ ...+++|++++||+|++|+|+|++|+
T Consensus 152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence 9999999999997 799999999999643210 011 24689999999999999999999999
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCC---CCeEEcCCCCCCcHH
Q 016620 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW 327 (386)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~ 327 (386)
++||++.|++||+|++|||+|||++||++||++||++|+|. |+||||++||++. +|||++ |||++|||+||+|.+
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e 290 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE 290 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999 9999999999975 689986 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 016620 328 TREGMATLAALNVLGKIKGYP 348 (386)
Q Consensus 328 ~~~~~~~~~~~ni~~~~~g~~ 348 (386)
+.+++.+.+++||.+|++|++
T Consensus 291 ~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 291 ARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999874
No 9
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-66 Score=538.90 Aligned_cols=335 Identities=33% Similarity=0.491 Sum_probs=296.5
Q ss_pred cEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (386)
Q Consensus 16 ~~vlvt~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~ 94 (386)
|||+++.++.+. ..+.|++. ++++.. .. ..+.+++.+.+. ++|+++++..+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 477888777653 35667665 344432 22 236788888877 599999887778999999999988 9999999
Q ss_pred ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016620 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (386)
Q Consensus 95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G 174 (386)
+|+|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..+ .+.|.+|.|+||||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999998542 245789999999999999
Q ss_pred hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (386)
Q Consensus 175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li 254 (386)
.||+.+|+++ ++|||+|++|||+....... .. +.. ..+++|++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~-----g~~-~~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QL-----GVE-LVSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hc-----CCE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 79999999999875321110 01 122 2389999999999999999999999999
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHH
Q 016620 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334 (386)
Q Consensus 255 ~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~ 334 (386)
+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+|+.|.++++++.+
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~ 292 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI 292 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCC
Q 016620 335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGL 381 (386)
Q Consensus 335 ~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (386)
.+++|+.+|++|+++.|.||. |.+.++ .++.++||+.+++++|+
T Consensus 293 ~~~~ni~~~~~g~~~~~~vn~--~~~~~~-~~~~~~~~~~la~riG~ 336 (526)
T PRK13581 293 QVAEQVIDALRGGPVPNAVNL--PSITAE-EAEKLKPYLDLAEKLGS 336 (526)
T ss_pred HHHHHHHHHHcCCCcCceeeC--CCCchh-hhHHhHHHHHHHHHHHH
Confidence 999999999999999999987 899886 99999999999999986
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-66 Score=518.55 Aligned_cols=316 Identities=27% Similarity=0.353 Sum_probs=279.5
Q ss_pred CCCCCcEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcE
Q 016620 11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89 (386)
Q Consensus 11 ~~~~~~~vlvt~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~ 89 (386)
.|.++||++++.+++++ ..+.+++.++ ++.... ...+.+++.+.+. ++|++++...+++++++++++++| |+
T Consensus 6 ~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~ 78 (409)
T PRK11790 6 LPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL--VA 78 (409)
T ss_pred CCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--eE
Confidence 46678999998877653 4577777666 665432 2347788887776 599988776678999999999988 99
Q ss_pred EEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620 90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (386)
Q Consensus 90 i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg 169 (386)
|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+ .+.|.+|.|+|||
T Consensus 79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gktvG 155 (409)
T PRK11790 79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKTLG 155 (409)
T ss_pred EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999988642 2356899999999
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (386)
Q Consensus 170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~ 249 (386)
|||+|+||+.+|+++ ++|||+|++||++.... .. ......+++|++++||+|++|+|+|++
T Consensus 156 IiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~----------------~~--~~~~~~~l~ell~~sDiVslh~Plt~~ 216 (409)
T PRK11790 156 IVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLP----------------LG--NARQVGSLEELLAQSDVVSLHVPETPS 216 (409)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEECCCcccc----------------cC--CceecCCHHHHHhhCCEEEEcCCCChH
Confidence 999999999999997 79999999999864321 00 122346899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CCCCCCCCeEEcCCCCCC
Q 016620 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA 324 (386)
Q Consensus 250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~ 324 (386)
|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++. +|||++|||++|||+||+
T Consensus 217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~ 296 (409)
T PRK11790 217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS 296 (409)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999864 489999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620 325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ 355 (386)
Q Consensus 325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~ 355 (386)
|.++.+++.+.+++|+.+|++|+++.+.||.
T Consensus 297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~ 327 (409)
T PRK11790 297 TQEAQENIGLEVAGKLVKYSDNGSTLSAVNF 327 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence 9999999999999999999999999999985
No 11
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-66 Score=484.54 Aligned_cols=336 Identities=33% Similarity=0.473 Sum_probs=303.3
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcccc
Q 016620 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (386)
Q Consensus 17 ~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G 96 (386)
+||++.++.... ++.|++.+.++++... ++.||+...+. ++|++++++.++++++.|+.... ++|+|.+.|+|
T Consensus 8 ~il~~e~~~~~~-~~~l~~~g~~v~~~~~----~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESLDQAC-IEILKDNGYQVEFKKN----LSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG 80 (406)
T ss_pred eEEEecccchHH-HHHHHhcCceEEEecc----CCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence 699999998754 7899999888875432 47789999887 59999999999999999996332 56999999999
Q ss_pred ccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 016620 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (386)
Q Consensus 97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I 176 (386)
+||+|++++.++||.|.|+|.+|+.++||+++++++++.|++.++...+++|.|. ...+.|.+++|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wn---r~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWN---RVKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCcee---ecceeeeEEeccEEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999999864 4567889999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (386)
Q Consensus 177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~ 256 (386)
|+.+|+++ +++||+|++||+........ ..| . ...+++|++..||||++|+|+||+|.+++|.
T Consensus 158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----v-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~ 220 (406)
T KOG0068|consen 158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----V-QLVSLEEILPKADFITLHVPLTPSTEKLLND 220 (406)
T ss_pred hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----c-eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence 99999996 89999999999987553211 111 1 2479999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC---CCCCCCCCCeEEcCCCCCCcHHHHHHHH
Q 016620 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA 333 (386)
Q Consensus 257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~ 333 (386)
+.|++||+|..+||++||++||++||++||++|+++|||+|||++||.. ...|.++|||++|||+|+.|.|+..+++
T Consensus 221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia 300 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA 300 (406)
T ss_pred HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 4589999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCC
Q 016620 334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPV 383 (386)
Q Consensus 334 ~~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (386)
..+++++.+|++| ...+.||- |-++.. +.+-.+||+.+.|.||+-+
T Consensus 301 ievaea~~~~~~~-~~~g~Vna--~~v~~~-~l~~~~~~~~~a~~l~r~~ 346 (406)
T KOG0068|consen 301 IEVAEAVSDYING-NSAGSVNA--PEVALE-SLTELKPNIVLAEKLGRLV 346 (406)
T ss_pred HHHHHHHHHHhcc-Cccceech--hhhhhh-hhhccCchhHHHHHHhhhh
Confidence 9999999999999 88899987 777775 8889999999999999854
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-65 Score=496.46 Aligned_cols=274 Identities=30% Similarity=0.381 Sum_probs=246.5
Q ss_pred CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHH
Q 016620 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (386)
Q Consensus 50 ~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~ 129 (386)
.+++++.+.+. ++|++++. ..+++++.++++++| |+|++.|+|+|+||+++++++||.|+|+||+++.+||||+++
T Consensus 33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 36788888876 59988774 457899999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 016620 130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (386)
Q Consensus 130 ~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~ 206 (386)
+||++.|++..+++.+++|.|..+... ...+++|+|+||||||+|.||+.+|+++ ++|||+|++||++.....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~--- 184 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC--- 184 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence 999999999999999999998643211 1234689999999999999999999997 799999999997532100
Q ss_pred HhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
.....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus 185 -----------------~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 185 -----------------REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred -----------------ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 012468999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEEeeccCCCCCCC-CCCC----CCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016620 287 KQNPMFRVGLDVFEDEPYMK-PGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP 348 (386)
Q Consensus 287 ~~g~i~gaalDV~~~EP~~~-~~L~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 348 (386)
++|+|.||+||||++||++. +||| ++|||++|||+||+|.++++++.+.+++||.+|++|++
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999864 6888 59999999999999999999999999999999999874
No 13
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-64 Score=497.45 Aligned_cols=306 Identities=24% Similarity=0.267 Sum_probs=268.5
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHhh
Q 016620 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (386)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~ 107 (386)
.+.|++.++++.+... ...+.+++.+.+. ++|++++.. ..+++++.++++++| |+|++.|+|+|+||++++++
T Consensus 61 ~~~l~~~g~e~~~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~ 135 (385)
T PRK07574 61 RKFLEERGHELVVTSD--KDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE 135 (385)
T ss_pred HHHHHhcCcEEEEeCC--CCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence 3567888888766432 2346788887776 599998853 357899999999988 99999999999999999999
Q ss_pred CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
Q Consensus 108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~ 187 (386)
+||.|+|++++++.+||||++++||++.|++..+++++++|.|..+. ....+++|+|++|||||+|.||+.+|++| ++
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~ 213 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP 213 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence 99999999999999999999999999999999999999999986432 11246789999999999999999999997 79
Q ss_pred CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcE
Q 016620 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (386)
Q Consensus 188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gai 267 (386)
|||+|++|||+....... .. .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 214 fG~~V~~~dr~~~~~~~~---------~~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 279 (385)
T PRK07574 214 FDVKLHYTDRHRLPEEVE---------QE-----LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279 (385)
T ss_pred CCCEEEEECCCCCchhhH---------hh-----cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence 999999999976321100 00 1122346899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (386)
Q Consensus 268 lIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g 346 (386)
|||+|||++||++||++||++|+|.||++|||++||++. +|||++|||++|||+||.|.++++++.+.+++||++|++|
T Consensus 280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G 359 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEG 359 (385)
T ss_pred EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999975 6999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 016620 347 YPIWGNPNQV 356 (386)
Q Consensus 347 ~~~~~~v~~~ 356 (386)
+++.|..+-+
T Consensus 360 ~~~~~~~~~~ 369 (385)
T PRK07574 360 RPIRDEYLIV 369 (385)
T ss_pred CCCCCCceEe
Confidence 9999977643
No 14
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.6e-63 Score=489.59 Aligned_cols=323 Identities=25% Similarity=0.304 Sum_probs=268.2
Q ss_pred eeCCCCCcEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhcc
Q 016620 9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA 85 (386)
Q Consensus 9 ~~~~~~~~~vlvt~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l 85 (386)
++..++++|||++.+..+. .| .+.+++.+ ...+ .. .+.+++.+.+. ++|++++. ..++++++++.+++|
T Consensus 12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L 83 (347)
T PLN02928 12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQV-DA----VAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM 83 (347)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEe-cC----CCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence 4567788899998776653 23 34454444 2222 21 35677777776 59988775 447899999999988
Q ss_pred CCcEEEEccccccccChhHHhhCCcEEecCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016620 86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL 162 (386)
Q Consensus 86 ~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~ 162 (386)
|+|++.|+|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.+++|.|.. ..+.+
T Consensus 84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~ 156 (347)
T PLN02928 84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDT 156 (347)
T ss_pred --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccC
Confidence 9999999999999999999999999999986 7899999999999999999999999999997642 24578
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
|+|+||||||+|.||+.+|++| ++|||+|++|||+.......... +. ....... .......+++|++++||+|+
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-IPNGDVDDLV---DEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-cccccccccc---cccCcccCHHHHHhhCCEEE
Confidence 9999999999999999999997 79999999999974321110000 00 0000000 00113568999999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPH 320 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPH 320 (386)
+|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++. +|||++|||++|||
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH 311 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH 311 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999864 69999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016620 321 IASASKWTREGMATLAALNVLGKIKGYPIWG 351 (386)
Q Consensus 321 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 351 (386)
+||+|.++++++.+.+++|+.+|++|+|+.|
T Consensus 312 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 312 VAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 9999999999999999999999999998866
No 15
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-63 Score=495.13 Aligned_cols=301 Identities=23% Similarity=0.242 Sum_probs=264.3
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHhh
Q 016620 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (386)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~ 107 (386)
.+.|++.++++.+.... ..+.+++.+.+. ++|++|+.. +.+++++.++++++| |+|++.|+|+|+||+++|++
T Consensus 68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~ 142 (386)
T PLN03139 68 RDWLESQGHQYIVTDDK--EGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA 142 (386)
T ss_pred HHHHHhcCCeEEEeCCC--CCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence 46678888888665433 346788888887 599998864 357999999999998 99999999999999999999
Q ss_pred CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
Q Consensus 108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~ 187 (386)
+||.|+|++|+++.+||||++++||++.|++..+++.+++|.|.. ......+++|.|+||||||+|+||+.+|++| ++
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~-~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a 220 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV-AGIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP 220 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc-ccccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence 999999999999999999999999999999999999999998852 1112346799999999999999999999998 79
Q ss_pred CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcE
Q 016620 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (386)
Q Consensus 188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gai 267 (386)
|||+|++||++...... ... .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 221 fG~~V~~~d~~~~~~~~---------~~~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 221 FNCNLLYHDRLKMDPEL---------EKE-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred CCCEEEEECCCCcchhh---------Hhh-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 99999999987532110 000 1122346899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (386)
Q Consensus 268 lIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g 346 (386)
|||+|||++||++||++||++|+|.||++|||++||++. +|||++|||++|||+||.|.++++++.+.+++||.+|++|
T Consensus 287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G 366 (386)
T PLN03139 287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG 366 (386)
T ss_pred EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999975 6999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 016620 347 YPIWG 351 (386)
Q Consensus 347 ~~~~~ 351 (386)
+++..
T Consensus 367 ~~~~~ 371 (386)
T PLN03139 367 EDFPA 371 (386)
T ss_pred CCCCC
Confidence 97554
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-62 Score=478.81 Aligned_cols=313 Identities=27% Similarity=0.416 Sum_probs=267.7
Q ss_pred cEEEEeC--CCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620 16 YRVVSTK--PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (386)
Q Consensus 16 ~~vlvt~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~ 93 (386)
|||++-. +...+-..+.+++++.++.. ... .++.+. .+.+. ++|++++...+++++++++++++.++|+|++.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTT--SKE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEE--cCC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 7776633 33322234556666555443 222 355665 55555 59999987767899999999984455999999
Q ss_pred cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (386)
Q Consensus 94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~ 173 (386)
|+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|. |... ..+++|+|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~ 154 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT 154 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999874 6432 3568999999999999
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (386)
Q Consensus 174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l 253 (386)
|.||+++|++| ++||++|++||++...... + .....++++++++||+|++|+|++++|.++
T Consensus 155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 99999999997 7999999999998653211 0 112358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------C----CCCCCCCCeEEcC
Q 016620 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP 319 (386)
Q Consensus 254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTP 319 (386)
++++.|++||+|++|||+|||.+||++||++||++|++.||+||||++||+. + +|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999962 1 2699999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (386)
Q Consensus 320 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 354 (386)
|+|++|.++++++.+.+++|+.+|++|++..+.+|
T Consensus 296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 99999999999999999999999999999999887
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-61 Score=474.97 Aligned_cols=317 Identities=24% Similarity=0.378 Sum_probs=270.2
Q ss_pred CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (386)
Q Consensus 14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~ 93 (386)
++++++++.+.+.. +++.+.+. +++++..... .++.+ ..+.+. ++|++++...++++++++++++++++|+|++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~e-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTDD-NVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCHH-HHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 56777887776553 45554443 2343322221 23444 445665 59999887777899999999998667999999
Q ss_pred cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (386)
Q Consensus 94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~ 173 (386)
|+|+|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|. |... ..|++|+|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~ 154 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT 154 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999884 6542 3568999999999999
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (386)
Q Consensus 174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l 253 (386)
|.||+++|++|+++|||+|++||++....... . .....++++++++||+|++|+|++++|.++
T Consensus 155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l 217 (332)
T PRK08605 155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL 217 (332)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence 99999999997458999999999876542111 0 112358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC-C-----------CCCCCCCeEEcC
Q 016620 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIVVP 319 (386)
Q Consensus 254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~-~-----------~L~~~~nvilTP 319 (386)
++++.++.||+|++|||+|||.++|+++|+++|++|+|.||+||||++||. +. + +||++|||++||
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 297 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP 297 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence 999999999999999999999999999999999999999999999999982 32 1 499999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (386)
Q Consensus 320 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 354 (386)
|+|++|.++.+++...+++|+.+|++|++..+.||
T Consensus 298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 99999999999999999999999999999999887
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=8.8e-61 Score=460.74 Aligned_cols=300 Identities=38% Similarity=0.553 Sum_probs=261.9
Q ss_pred CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCcEEEEccccccccChhHHhhCCcEEec
Q 016620 36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114 (386)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l-~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n 114 (386)
.+.+.......+..++.+++.....+...++.+.....++.+.+.++ |++ |+|+++|+|+||||+++|++|||+|+|
T Consensus 35 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~n 112 (336)
T KOG0069|consen 35 QGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVAN 112 (336)
T ss_pred ccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEec
Confidence 33433333334444566666656554445555555567778888777 777 999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE
Q 016620 115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194 (386)
Q Consensus 115 ~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~ 194 (386)
+|+.++.+|||++++++|.++|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++|||.+.|
T Consensus 113 vp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y 190 (336)
T KOG0069|consen 113 VPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILY 190 (336)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeee
Confidence 999999999999999999999999999999999999 788878888999999999999999999999998 789999999
Q ss_pred EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 195 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
++|+.......+ .| .....+++|++.+||+|++|||+|++|+++||++.|.+||+|++|||++||
T Consensus 191 ~~r~~~~~~~~~--~~-------------~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 191 HSRTQLPPEEAY--EY-------------YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred ecccCCchhhHH--Hh-------------cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 998765422110 00 112469999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (386)
Q Consensus 275 ~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 354 (386)
.++|++++++||++|++.+|+||||++||.++++|++++|+++|||+|+.|.+++++|+..++.|+.+++.|+|+...++
T Consensus 256 ~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 256 AIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred ccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 99999999999999999999999999999777899999999999999999999999999999999999999999998775
No 19
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.3e-58 Score=448.12 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=248.9
Q ss_pred EEEE-eCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620 17 RVVS-TKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (386)
Q Consensus 17 ~vlv-t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~ 95 (386)
.+++ ......+.|.+.+++..+++++....+ ++ . .++|+++++.. +.+.++ .++| |+|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a 65 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFALGA 65 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence 4443 344455558888888644444432211 11 1 25898887653 345664 4666 99999999
Q ss_pred cccccChhH-----HhhCCcEEecCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620 96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169 (386)
Q Consensus 96 G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg 169 (386)
|+|++|... +..+||.|+|+++ .++.+||||++++||++.|++..+...++++.|..+ .+.+++|+|||
T Consensus 66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg 140 (312)
T PRK15469 66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG 140 (312)
T ss_pred ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence 999998322 3458999999864 689999999999999999999999999999987532 23579999999
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (386)
Q Consensus 170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~ 249 (386)
|||+|.||+.+|++| ++|||+|++||++..... +.. ......++++++++||+|++|+|+|++
T Consensus 141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence 999999999999997 799999999998654310 000 111246899999999999999999999
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHH
Q 016620 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT 328 (386)
Q Consensus 250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~ 328 (386)
|+++|+++.|++||+|++|||+|||++||++||++||++|++.||+||||++||++. +|||++|||++|||+||.|.+.
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~ 283 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA 283 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999975 6999999999999999999864
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcC
Q 016620 329 REGMATLAALNVLGKIKGYPIWGNPNQVEPF 359 (386)
Q Consensus 329 ~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~ 359 (386)
++...+.+|+++|++|+++.|.||.-++|
T Consensus 284 --~~~~~~~~n~~~~~~g~~~~~~V~~~~gY 312 (312)
T PRK15469 284 --EAVEYISRTIAQLEKGERVCGQVDRARGY 312 (312)
T ss_pred --HHHHHHHHHHHHHHcCCCCcccCCcccCC
Confidence 67888999999999999999999976555
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=4.2e-57 Score=446.76 Aligned_cols=279 Identities=27% Similarity=0.354 Sum_probs=240.5
Q ss_pred cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (386)
Q Consensus 16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~ 95 (386)
|||+++..++. ..+.+++.+ ++.... ....+.+++ . ++|+++++..+++++++++ .+++ |+|++.++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 68888887763 246666554 555433 334465554 2 5999999877789999985 5766 99999999
Q ss_pred cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (386)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~ 175 (386)
|+||||+++++++||.|+|+||+++.+||||+++++|++.|+. |.+|.|+||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999951 2479999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh----hh
Q 016620 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (386)
Q Consensus 176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~----t~ 251 (386)
||+.+|++| ++|||+|++|||..... . . .....++++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 79999999999753210 0 0 01246899999999999999999996 99
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (386)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~ 331 (386)
++||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++|+..++ ++|||+||+|.++..+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~ 265 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR 265 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988788988665 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 016620 332 MATLAALNVLGKIKGYPIW 350 (386)
Q Consensus 332 ~~~~~~~ni~~~~~g~~~~ 350 (386)
+...+++|+.+|+ |.+..
T Consensus 266 ~~~~~~~~l~~~~-~~~~~ 283 (378)
T PRK15438 266 GTTQVFEAYSKFI-GHEQH 283 (378)
T ss_pred HHHHHHHHHHHHH-cCccc
Confidence 9999999999998 55543
No 21
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-56 Score=434.03 Aligned_cols=262 Identities=22% Similarity=0.327 Sum_probs=227.3
Q ss_pred CCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 016620 62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA 141 (386)
Q Consensus 62 ~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~ 141 (386)
++|+++.... ....++| |+|++.|+|+|++|+++|+++||.++|. |+++.+||||++++||++.|++..+
T Consensus 34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence 4787754432 1224566 9999999999999999999998888775 7889999999999999999999999
Q ss_pred HHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC
Q 016620 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221 (386)
Q Consensus 142 ~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (386)
++.+++|.|..+ .+++|+|+||||||+|.||+++|+++ ++|||+|++|||+.... +..
T Consensus 104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~- 161 (303)
T PRK06436 104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS- 161 (303)
T ss_pred HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence 999999987642 34789999999999999999999987 79999999999874320 110
Q ss_pred ccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (386)
Q Consensus 222 ~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (386)
....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.+|+||||++
T Consensus 162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 11468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCC
Q 016620 302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNE 362 (386)
Q Consensus 302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~ 362 (386)
||++++. .+|||++|||++ +.|.++++++.+.+++||.+|++|++ .|.||.- +|+-.
T Consensus 239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~~-~y~~~ 296 (303)
T PRK06436 239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRKE-EYIVR 296 (303)
T ss_pred CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEchH-Hheee
Confidence 9986543 689999999986 48899999999999999999999998 5888653 55443
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1e-56 Score=445.28 Aligned_cols=286 Identities=24% Similarity=0.314 Sum_probs=245.3
Q ss_pred cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (386)
Q Consensus 16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~ 95 (386)
|||++..++|-. .+.+++.+ ++.... ...++.+.+ . ++|+++++..+++++++++ .+++ |+|++.++
T Consensus 1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~~l----~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRAAV----R-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHHHh----C-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 789998888632 35555544 554433 223344433 3 5999998877889999987 4666 99999999
Q ss_pred cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (386)
Q Consensus 96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~ 175 (386)
|+||||+++++++||.|+|+||+++.+||||+++++|++.|+ .|.++.|+||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999884 13579999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCCh----hhh
Q 016620 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (386)
Q Consensus 176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~----~t~ 251 (386)
||+.+|+++ ++|||+|++||+..... . ......+++|++++||+|++|+|+|+ .|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------E-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc--------------c-----cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999997 79999999999854320 0 01124689999999999999999999 599
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (386)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~ 331 (386)
++||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.++..+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR 265 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887889985 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620 332 MATLAALNVLGKIKGYPIWGNPNQV 356 (386)
Q Consensus 332 ~~~~~~~ni~~~~~g~~~~~~v~~~ 356 (386)
+...+++|+.+|+.+.+-..-.+.+
T Consensus 266 ~~~~~~~nl~~~~~~~~~~~~~~~~ 290 (381)
T PRK00257 266 GTAQIYQALCRFFGIPARVSLTDLL 290 (381)
T ss_pred HHHHHHHHHHHHHcCCCccchhccC
Confidence 9999999999999998766655443
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=7.1e-47 Score=340.18 Aligned_cols=177 Identities=42% Similarity=0.560 Sum_probs=152.0
Q ss_pred HHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 016620 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (386)
Q Consensus 128 l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~ 207 (386)
+++||++.|++..+++.++++.| |......+++++|+||||||+|.||+.+|+++ ++|||+|++|||+....... .
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-~ 76 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-D 76 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH-H
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc-c
Confidence 68999999999999999999998 22333567899999999999999999999997 79999999999998764310 0
Q ss_pred hhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
. . .....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus 77 --------~-----~-~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 77 --------E-----F-GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp --------H-----T-TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred --------c-----c-cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 0 0 1135799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCC
Q 016620 288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (386)
Q Consensus 288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia 322 (386)
+|++.||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999986 4999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=1.3e-32 Score=262.70 Aligned_cols=290 Identities=28% Similarity=0.361 Sum_probs=247.5
Q ss_pred CHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHH
Q 016620 51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130 (386)
Q Consensus 51 ~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~ 130 (386)
+..|+.+.+-..+-+-+...+..++++-+++.+.+ +++.+.|.|+|++|+.++.+.||.|||.|+...+.+|+-++..
T Consensus 62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h 139 (435)
T KOG0067|consen 62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH 139 (435)
T ss_pred chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence 56677765554566666666777889999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCccCC-CCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 016620 131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (386)
Q Consensus 131 ~L~~~R~~~~~~~~~~~~~~~~-w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~ 206 (386)
+|.++|+.....+.+++|.|.+ |... ......++|.+.|++|+|.+|+.++.+ |++||..|+.||++..+-.+.+
T Consensus 140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~ 218 (435)
T KOG0067|consen 140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS 218 (435)
T ss_pred HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhhh
Confidence 9999999999999999998743 2211 112356899999999999999999999 5899999999999887644332
Q ss_pred HhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
.+.....++.+++.++|.+++||.+++.+.++|+.-.+.+|+.|++++|++||.++|+++|.++|
T Consensus 219 ---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL 283 (435)
T KOG0067|consen 219 ---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL 283 (435)
T ss_pred ---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence 12234457999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEE-eeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC---CCCCCCCCCCcCCCC
Q 016620 287 KQNPMFRVG-LDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY---PIWGNPNQVEPFLNE 362 (386)
Q Consensus 287 ~~g~i~gaa-lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~---~~~~~v~~~~~~~~~ 362 (386)
+.|++.+++ .+ | ...||.+.||.++|||.++++..+...+.+.++..+++.+.|. .++|+||+ .|..-
T Consensus 284 k~G~i~~aa~~~-~-----~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk--E~~~~ 355 (435)
T KOG0067|consen 284 KSGRIRGAAPRS-F-----KQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNK--EFSPT 355 (435)
T ss_pred ccCceecccCcc-c-----ccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhh--hhccc
Confidence 999999998 11 1 1247899999999999999999999999999999999999884 59999998 66665
Q ss_pred CCCC
Q 016620 363 NAQP 366 (386)
Q Consensus 363 ~~~~ 366 (386)
++.+
T Consensus 356 ~~p~ 359 (435)
T KOG0067|consen 356 NAPW 359 (435)
T ss_pred cCCc
Confidence 4333
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=2.2e-20 Score=188.53 Aligned_cols=169 Identities=20% Similarity=0.308 Sum_probs=133.9
Q ss_pred cccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620 94 AVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (386)
Q Consensus 94 ~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG 172 (386)
++|+..+- .+.....+|+|+|+|++++.++||+++++++++...+ +|.+ +..+.|++|+|+|
T Consensus 199 ttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~-----------~~~LaGKtVgVIG 261 (476)
T PTZ00075 199 TTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT-----------DVMIAGKTVVVCG 261 (476)
T ss_pred hHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc-----------CCCcCCCEEEEEC
Confidence 55655442 1122346899999999999999999999999988433 3332 2579999999999
Q ss_pred cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (386)
Q Consensus 173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~ 252 (386)
+|.||+.+|+++ ++|||+|+++++++....... . .++ ...+++++++.||+|++|+ .|.+
T Consensus 262 ~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~-----~G~-~~~~leell~~ADIVI~at----Gt~~ 321 (476)
T PTZ00075 262 YGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------M-----EGY-QVVTLEDVVETADIFVTAT----GNKD 321 (476)
T ss_pred CCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------h-----cCc-eeccHHHHHhcCCEEEECC----Cccc
Confidence 999999999997 799999999987654432211 0 111 2357999999999999995 4789
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC
Q 016620 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 306 (386)
Q Consensus 253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~ 306 (386)
+|+.+.|++||+|++|||+||+ |++.++++|+.+. ++|+++.||...
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999999999999999999 7888889998653 799999999754
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.82 E-value=3.3e-19 Score=152.69 Aligned_cols=101 Identities=31% Similarity=0.428 Sum_probs=85.5
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccc
Q 016620 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (386)
Q Consensus 18 vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~ 97 (386)
||++.+++++ .++.|++ ++++++.. ..+.+++.+.+. ++|+++++...++++++++.+++| |+|++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 6788888765 4788888 55777655 247888988887 499999988777999999999988 9999999999
Q ss_pred cccChhHHhhCCcEEecCCCCCchhHHHHH
Q 016620 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (386)
Q Consensus 98 d~id~~~~~~~gI~v~n~~~~~~~~vAE~a 127 (386)
|+||+++++++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.81 E-value=3.1e-19 Score=171.99 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=144.8
Q ss_pred HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhhccCC
Q 016620 29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAGG 87 (386)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~ad~vi~~~~----------------~~~~~~~l~~l~~l~~ 87 (386)
..+.|.+.|..+..+..+.. ..+..++.+..-.++|+++.-.+ ..+++++++++|.
T Consensus 16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~--- 92 (287)
T TIGR02853 16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG--- 92 (287)
T ss_pred HHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence 35778888888766543311 00122222221135888886221 2356788888773
Q ss_pred cEEEEccccccccChh-HHhhCCcEEe------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016620 88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (386)
Q Consensus 88 k~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g 160 (386)
++...+|+++.|++ +|+++||.|+ |++.+++.++||.++++++.. .+
T Consensus 93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~ 146 (287)
T TIGR02853 93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD 146 (287)
T ss_pred --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC
Confidence 44456688888877 8999999999 999999999999999877743 11
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+++|++++|+|+|.||+.+|+.| +++|++|++++|+....... ...+. ......+++++++++|+|
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~---------~~~g~---~~~~~~~l~~~l~~aDiV 213 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI---------TEMGL---IPFPLNKLEEKVAEIDIV 213 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHCCC---eeecHHHHHHHhccCCEE
Confidence 368999999999999999999998 69999999999986542111 11111 111234678889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
++|+|.+ +++++.++.||+++++||++..+
T Consensus 214 int~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 214 INTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 9999953 67889999999999999998844
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.66 E-value=3.6e-15 Score=144.56 Aligned_cols=196 Identities=19% Similarity=0.169 Sum_probs=141.9
Q ss_pred HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCCc----------------cccHHHHHHhh
Q 016620 29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLTE----------------DWGETLFAALS 83 (386)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~---------~~~e~~~~~~~~ad~vi~~~~~----------------~~~~~~l~~l~ 83 (386)
..+.|.+.|+++.+...++... +.++ .+. ++|+++.-.+. .++++.++.++
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 3577888999987755443221 1222 233 58988854221 23678899999
Q ss_pred ccCCcEEEEccccccccChhHHhhCCcEEecCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc
Q 016620 84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157 (386)
Q Consensus 84 ~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~ 157 (386)
+. .. ...|.+.++++ +.+.++||.+.+.... ++.++||.++.+.+. +
T Consensus 93 ~~--~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~--------------------- 145 (296)
T PRK08306 93 EH--CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H--------------------- 145 (296)
T ss_pred CC--CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence 85 43 44689999988 8899999999987753 888899987765432 1
Q ss_pred ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 158 ~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
.+.++.|++++|+|+|.+|+.+++.| +++|++|+++|++...... . ...+. ......++.+.++++
T Consensus 146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~--~-------~~~G~---~~~~~~~l~~~l~~a 211 (296)
T PRK08306 146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR--I-------TEMGL---SPFHLSELAEEVGKI 211 (296)
T ss_pred -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH--H-------HHcCC---eeecHHHHHHHhCCC
Confidence 01357899999999999999999997 7999999999998654211 1 11121 112234678889999
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
|+|+.++|. .+++++.++.|++++++||++..
T Consensus 212 DiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 212 DIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 999999983 56789999999999999999763
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.61 E-value=2e-15 Score=152.35 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=101.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
..+.|++|+|+|+|.||+.+|+++ ++||++|+++++++........ .+ + ...+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~---------~G-----~-~vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALM---------EG-----Y-QVLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHh---------cC-----C-eeccHHHHHhhCCEE
Confidence 347999999999999999999997 7999999999887644222111 11 1 124789999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeccCCCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR-g~~vde~aL~~a--L~~g~i~gaalDV~~~EP 303 (386)
+.+. .+.++++.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +.+|+|..|-
T Consensus 314 I~tT----Gt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VTTT----GNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EECC----CCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 9743 5789999999999999999999999 679999999998 8888877 9999998753
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.60 E-value=3.5e-14 Score=142.19 Aligned_cols=120 Identities=28% Similarity=0.326 Sum_probs=100.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....... ..+ + ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~~G-----~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------MDG-----F-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------hcC-----C-EeCCHHHHHhcCCEE
Confidence 358999999999999999999997 799999999987765432211 111 1 234678999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
+.+.. +.++|+.+.|..||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.
T Consensus 255 ItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 255 ITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred EECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 88763 688899999999999999999999998 999999999988888999999987
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.45 E-value=4.5e-12 Score=127.78 Aligned_cols=155 Identities=23% Similarity=0.287 Sum_probs=109.4
Q ss_pred ccccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (386)
Q Consensus 93 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv 171 (386)
.++|+..+- ...-.+.+++|.|++..+..+.-|...+.-.+....+. +. .+..+.|++|+|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlVi 218 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVVA 218 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEEE
Confidence 456665542 22223568999999998887755533332222221110 00 1235899999999
Q ss_pred ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (386)
Q Consensus 172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~ 251 (386)
|+|.||+.+|+++ +++|++|+++|+++....... ..+ + ...+++++++.+|+|+.+. .+.
T Consensus 219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~~G-----~-~v~~l~eal~~aDVVI~aT----G~~ 278 (425)
T PRK05476 219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------MDG-----F-RVMTMEEAAELGDIFVTAT----GNK 278 (425)
T ss_pred CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------hcC-----C-EecCHHHHHhCCCEEEECC----CCH
Confidence 9999999999997 799999999998765432211 111 1 1347889999999999876 357
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016620 252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (386)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~ 284 (386)
++|+.+.|..||+|++++|+|+... +|.++|.+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 7899999999999999999999886 78777754
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.44 E-value=3.1e-13 Score=130.58 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=75.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
..|+|+||||||+|+||+++|++| ++||++|++|++....... ....+ + ...+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~~~---------A~~~G-----~-~v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSFEV---------AKADG-----F-EVMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhhHH---------HHHcC-----C-EECCHHHHHhcCCEE
Confidence 569999999999999999999998 7999999999865322110 01111 2 235899999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
++|+|+ ++++++++++.++.||+|++|+-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence 999997 77899999999999999998865
No 33
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.39 E-value=2.2e-12 Score=113.14 Aligned_cols=103 Identities=29% Similarity=0.431 Sum_probs=77.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
..+.||++.|+|||.+|+.+|+.| +++|++|++++..+...+++..+.| ...++++++.++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence 469999999999999999999997 7999999999999888777655543 235799999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV 283 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~ 283 (386)
+.+.. ..++|..+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 99875 378899999999999999999998665 6655544
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.29 E-value=1.7e-11 Score=108.62 Aligned_cols=115 Identities=25% Similarity=0.267 Sum_probs=85.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|||||+|.||..+|++| ...|.+|++||+++....+ +...+ .....++.|++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~---------~~~~g-----~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAEA---------LAEAG-----AEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHHH---------HHHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhhh---------hHHhh-----hhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 4789999999998754321 11112 3446899999999999999999
Q ss_pred CChhhhhccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620 246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (386)
Q Consensus 246 lt~~t~~li~-~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD 297 (386)
..++.+.++. .+.++.+++|.++||++....-....+.+.+++.. ...+|
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd 117 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD 117 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence 8887777653 23788899999999999999999999999998754 34444
No 35
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.24 E-value=5.7e-11 Score=113.69 Aligned_cols=124 Identities=23% Similarity=0.176 Sum_probs=100.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
.+||+||+|.||.++|++| ..-|..|.+|||++.+..+. +...+ .....+..|+.+.+|+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 57899999999998763221 12222 2345688899999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
.+++.+.++. ...++.+|+|+++||+|+.+......+.++++.+.+...--=|.-..+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999888875 568999999999999999999999999999998875554444555544
No 36
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.21 E-value=4.8e-10 Score=112.91 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=83.0
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
+..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+++...... ...| + ...++++.+..+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~-~~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----Y-EVMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----C-EEccHHHHHcCCCE
Confidence 3468999999999999999999996 79999999999876542211 1112 1 12356788899999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~ 284 (386)
|+.|.. +.+.++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998764 466788888999999999999999886 88777764
No 37
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.19 E-value=1.1e-10 Score=112.81 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=88.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl 246 (386)
+|||||+|.||+.+|+.| ...|.+|++||++.... +. +...+ .....+.++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DE--------LLAAG-----AVTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HH--------HHHCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence 589999999999999998 47899999999987542 11 11112 12346788999999999999998
Q ss_pred Chhhhhcc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 247 t~~t~~li-~-~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
++.++.++ . ...+..+++|+++||++++...+.+++.+.++++.+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 87777664 3 3467789999999999999998889999999876444
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.18 E-value=1.3e-10 Score=112.62 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=94.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|||||+|.||+.+|+.| ...|.+|++||++...... +...+ .....++++++++||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~~---------~~~~g-----~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVAE---------VIAAG-----AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH---------HHHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 4799999999999999998 4789999999998754211 11111 1234678899999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
.+..+..++. ...++.+++|.++||+++......+++.+.+.+..+...-.-|+..+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8887777763 346788999999999999999888899999987655443334554443
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.11 E-value=5.5e-10 Score=108.55 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=90.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl 242 (386)
++|||||+|.||+.+|+.| ...|.+|++||++..... . +...+ .....++++++++ +|+|++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~-~--------~~~~g-----~~~~~s~~~~~~~~~~advVi~ 65 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVD-V--------AGKLG-----ITARHSLEELVSKLEAPRTIWV 65 (299)
T ss_pred CEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHH-H--------HHHCC-----CeecCCHHHHHHhCCCCCEEEE
Confidence 3799999999999999998 478999999999865421 1 11112 2234688898876 699999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD 297 (386)
|+|..+.++.++ .+.+..+++|.++||+|++...+..++.+.+++..+. .+|
T Consensus 66 ~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 66 MVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred EecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 999887888877 4677889999999999999999999999999876543 355
No 40
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.11 E-value=4.6e-10 Score=108.93 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=89.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|||||+|.||.++|+.|+ ..|.+|++||++..... .+ ...+ .....++.+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~-~~G~~V~v~d~~~~~~~-~~--------~~~g-----~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLL-KQGHQLQVFDVNPQAVD-AL--------VDKG-----ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-HH--------HHcC-----CcccCCHHHHHhcCCEEEEecC
Confidence 37999999999999999984 67899999999875422 11 1111 2234688899999999999999
Q ss_pred CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
.....+.++. ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8776776664 3467789999999999999999999999999987655
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.00 E-value=2.7e-09 Score=103.82 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=88.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl 242 (386)
++|||||+|.||+.+|+.| ...|.+|.+||+++..... +...+ .....+++|+++. +|+|++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~~---------~~~~g-----~~~~~~~~e~~~~~~~~dvvi~ 65 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVEA---------LAEEG-----ATGADSLEELVAKLPAPRVVWL 65 (301)
T ss_pred CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHCC-----CeecCCHHHHHhhcCCCCEEEE
Confidence 3799999999999999998 4789999999998754321 11112 2234678888876 699999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
++|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus 66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 999877777776 4677889999999999999999999999999887654
No 42
>PLN02712 arogenate dehydrogenase
Probab=98.99 E-value=2.5e-09 Score=114.24 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=83.6
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hC
Q 016620 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a 237 (386)
.|..+.+++|||||+|.||+++|+.| +.+|.+|++||++.... . ....+ .....++++++. .+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~--------a~~~G-----v~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E--------AQKLG-----VSYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H--------HHHcC-----CeEeCCHHHHHhcCC
Confidence 45678999999999999999999998 67899999999875321 1 01112 123467888776 58
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
|+|++|+|. ..+..++.+-....||+|++++|++.++-...+.+.+.+.
T Consensus 427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~ 475 (667)
T PLN02712 427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP 475 (667)
T ss_pred CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc
Confidence 999999995 6778887765555799999999999987544455554443
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.98 E-value=1.9e-09 Score=105.52 Aligned_cols=119 Identities=23% Similarity=0.233 Sum_probs=84.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
..++|++|||||+|+||+++|+.| +.+|++|+++++........ ....+ +. ..+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~-~~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FE-VLTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Ce-eCCHHHHHhcCCEE
Confidence 468999999999999999999998 68999999887764332111 01111 22 24889999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (386)
++++|.+.. ..+++++.+..|++|+++ -++.|--+ ..+ + ...+...||+-..|.
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i--~~~----~--~~p~~~~~Vi~vaPn 131 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNI--HFG----Q--IVPPADVDVIMVAPK 131 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCCh--hhc----e--eccCCCCcEEEeCCC
Confidence 999997654 777778888999999988 55666221 111 1 112445678877764
No 44
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.97 E-value=3.8e-09 Score=108.77 Aligned_cols=128 Identities=12% Similarity=0.126 Sum_probs=99.9
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEEc
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl~ 243 (386)
+|||||+|.||+.+|+.|+ .-|.+|.+|||+..... .+.+.. ...+... ...+.+++|+++. +|+|++|
T Consensus 8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~~-~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVD-ETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHHH-HHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 6999999999999999985 67999999999876532 221100 0012111 1134688888876 9999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
+|..+.+..++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|...++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999888888 568889999999999999999999999999998877777666776654
No 45
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.97 E-value=2e-09 Score=104.10 Aligned_cols=104 Identities=30% Similarity=0.417 Sum_probs=89.0
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+.||++.|.|||.+|+.+|.++ ++.|++|+++.-.+-..+++.++.| ....++|....+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence 57999999999999999999997 7999999999888777766654432 3467899999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH 285 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~a 285 (386)
.++ .++++|..+.|..||+|+++-|.++-.+ ||.+.|.+.
T Consensus 270 T~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 270 TAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL 310 (420)
T ss_pred Ecc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence 998 4689999999999999999999998776 777766643
No 46
>PLN02256 arogenate dehydrogenase
Probab=98.96 E-value=1.1e-08 Score=99.72 Aligned_cols=136 Identities=14% Similarity=0.169 Sum_probs=92.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVv 241 (386)
-++++|||||+|.||+++|+.| +..|.+|++||++...... ...+ .....++++++ ..+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a----------~~~g-----v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA----------AELG-----VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH----------HHcC-----CeeeCCHHHHhhCCCCEEE
Confidence 4678899999999999999998 5789999999987532111 1111 12246778876 4799999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----CCCCCCCCeEE
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV 317 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvil 317 (386)
+|+|. ..+..++.+-....++++++++|++.++-+-.+++.+.+..+ ..+....|... ...+...++++
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~------~~~V~~HPmaG~e~~~~~~~~~~~~~ 170 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEE------FDILCTHPMFGPESGKGGWAGLPFVY 170 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCC------CeEEecCCCCCCCCCccccCCCeEEE
Confidence 99995 356666644335678999999999996644445555544322 24555667632 13556667888
Q ss_pred cCCC
Q 016620 318 VPHI 321 (386)
Q Consensus 318 TPHi 321 (386)
+|+.
T Consensus 171 ~~~~ 174 (304)
T PLN02256 171 DKVR 174 (304)
T ss_pred ecce
Confidence 8753
No 47
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.89 E-value=1.8e-08 Score=96.93 Aligned_cols=137 Identities=14% Similarity=0.199 Sum_probs=86.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|||||+|.||+++|+.| +..|.+|++||++....... ...+... ....+. +.+++||+|++|+|
T Consensus 1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence 3799999999999999998 56799999999976542111 1111110 111233 56789999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------CCCCCCCe
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKNA 315 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----------~L~~~~nv 315 (386)
... ...++ ++....+++++++++++.-.. . ..+++....-. +....|+..+ .|+.-.++
T Consensus 67 ~~~-~~~~~-~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 67 IGL-LLPPS-EQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred HHH-HHHHH-HHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 532 33333 566677899999999988553 2 23333322111 2233454321 26777889
Q ss_pred EEcCCCCCCcHHH
Q 016620 316 IVVPHIASASKWT 328 (386)
Q Consensus 316 ilTPHia~~t~~~ 328 (386)
++||+-.+ +.+.
T Consensus 136 ~l~p~~~~-~~~~ 147 (279)
T PRK07417 136 VLTPTENT-DLNA 147 (279)
T ss_pred EEccCCCC-CHHH
Confidence 99997543 3443
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.88 E-value=1.3e-08 Score=104.66 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=98.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiVvl 242 (386)
.+|||||+|.||+++|+.| ..-|.+|.+|||+.....+ +.+ .....+.......+++|+++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~~-l~~-------~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTEE-FVK-------KAKEGNTRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHH-------hhhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 4678999999998765321 111 00000111223568999886 4899999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
++|....+..++ ++.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888888888 567888999999999999999999999999998877766555665543
No 49
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.88 E-value=1.4e-08 Score=98.47 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=85.7
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl 246 (386)
+|||||+|.||+.+|+.| ...|.+|++||+++.. +.+ ...+ .....+..+++++||+|++|+|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence 699999999999999998 4678999999987532 211 1112 22346788999999999999998
Q ss_pred ChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 247 t~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
.++.+.++.. ..++.+++|.++|+++....-....+.+.+++..+
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 8777776632 36777899999999999999888889999887643
No 50
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.86 E-value=2.3e-08 Score=102.12 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=93.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|+|+| +|.||+++|+.| +..|.+|.+|+++...... . ....+ .....+.++.+.+||+|++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~~-~-------a~~~g-----v~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGKE-V-------AKELG-----VEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHHH-H-------HHHcC-----CeeccCHHHHhccCCEEEEec
Confidence 4799997 899999999998 5789999999987643211 1 01111 122357788899999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CCCCCCCCCCeEEcCCC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI 321 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHi 321 (386)
|. ..+..++ .+....+++++++++++.......+++.+.+.. +..+....|+ +..+++....+++||+-
T Consensus 67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~------~~~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE------GVEILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC------CCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 96 3445555 556677899999999998654444555544432 2234455676 34467777889999974
No 51
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.86 E-value=4.5e-08 Score=97.51 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=87.9
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+.-.+|+|||+ |.||+++|+.|++.++.+|++||+... ...++++.+++||+|+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 45679999999 999999999985446999999997421 1246788899999999
Q ss_pred EccCCChhhhhcccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---CCCCCCCCe
Q 016620 242 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA 315 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~---~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~---~~L~~~~nv 315 (386)
+|+|.. .+..++. +.. ..++++++++|++.-+- .+.+++.... .++....|+.- ..+++..++
T Consensus 57 lavPv~-~~~~~l~-~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 57 FSAPIR-HTAALIE-EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred EeCCHH-HHHHHHH-HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeE
Confidence 999963 4455543 332 34899999999998652 2233332221 24667788842 468888889
Q ss_pred EEcCC
Q 016620 316 IVVPH 320 (386)
Q Consensus 316 ilTPH 320 (386)
++||.
T Consensus 126 iltp~ 130 (370)
T PRK08818 126 VVCEA 130 (370)
T ss_pred EEeCC
Confidence 99996
No 52
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.85 E-value=1.9e-08 Score=97.79 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=84.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiVvl 242 (386)
++|||||+|.||..+|+.|+ ..|.+|.+|||+..... . +...+. ....+++++ +..+|+|++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~-~~g~~V~~~dr~~~~~~-~--------l~~~g~-----~~~~s~~~~~~~~~~~dvIi~ 65 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLA-KRGHDCVGYDHDQDAVK-A--------MKEDRT-----TGVANLRELSQRLSAPRVVWV 65 (298)
T ss_pred CEEEEEcchHHHHHHHHHHH-HCCCEEEEEECCHHHHH-H--------HHHcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence 37999999999999999984 67999999999876432 1 111121 112455554 456899999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
++|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 99976 777777 5677889999999999999888999999988876554
No 53
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.83 E-value=3.5e-08 Score=98.34 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=86.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|+|||+|.||+++|+.| +..|.+|.+|+++........ ..+ .........++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~---------a~~-~~~~~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR---------ALG-FGVIDELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH---------Hhc-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999998 577877777776554321110 001 11111123577888999999999999
Q ss_pred CChhhhhcccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------CCCCCCC
Q 016620 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKN 314 (386)
Q Consensus 246 lt~~t~~li~~~~~~-~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----------~L~~~~n 314 (386)
. ..+..++ .+... .+++++++++++.-+.--.+++.+.+.. ...+....|++.. .|+....
T Consensus 70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD------LIRFVGGHPMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC------CCeEEeeCCcCcCchhhHHHhcHHHHCCCc
Confidence 6 3556665 33333 4789999999988764323333322111 1122333566432 4677777
Q ss_pred eEEcCCCC
Q 016620 315 AIVVPHIA 322 (386)
Q Consensus 315 vilTPHia 322 (386)
.++||+-.
T Consensus 142 ~il~~~~~ 149 (359)
T PRK06545 142 WVLTPDDH 149 (359)
T ss_pred EEEecCCC
Confidence 89999743
No 54
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.82 E-value=5.8e-08 Score=93.25 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=90.1
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEE--EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCCEEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiVv 241 (386)
-++|+|+|+|.||+++|+.| +.-|..+ +++|++....... ...+.......+. .+.+..+|+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 36899999999999999998 5666655 6666655432211 1122222212233 67788899999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----CCCCCCCeEE
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV 317 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----~L~~~~nvil 317 (386)
+++|- ..|..++ ++....+|+|+++++++.-.- ..+++++.- ...-. .+....|+.-+ ++++...+++
T Consensus 70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~----~v~~a~~~~-~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKS----SVVEAMEKY-LPGDV-RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred EeccH-HHHHHHH-HHhcccCCCCCEEEecccccH----HHHHHHHHh-ccCCC-eeEecCCCCCCcccccccCCCEEEE
Confidence 99996 3455554 555558999999999988663 334444432 22222 67777888433 7888889999
Q ss_pred cCCC
Q 016620 318 VPHI 321 (386)
Q Consensus 318 TPHi 321 (386)
||.-
T Consensus 142 tp~~ 145 (279)
T COG0287 142 TPSE 145 (279)
T ss_pred cCCC
Confidence 9963
No 55
>PLN02858 fructose-bisphosphate aldolase
Probab=98.81 E-value=2.2e-08 Score=114.42 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=92.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++.+||+||+|.||..||++|+ .-|.+|.+||+++.... . +...+ ...+.++.|+.+.||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLME-K--------FCELG-----GHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEE
Confidence 4568999999999999999984 67999999999875432 1 11222 23457899999999999999
Q ss_pred cCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 244 lPlt~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
+|..+..+.++ ....+..+++|.++||+|+...-....+.+.+++..
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 99988888886 346788899999999999999999999999998764
No 56
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.78 E-value=2.1e-08 Score=95.11 Aligned_cols=95 Identities=23% Similarity=0.438 Sum_probs=82.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+.||.+.|.|||..|+.+|..| ++||++|++....+-..+.+-++.| ....++|+.++.||++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence 47899999999999999999998 8999999999877776666544433 3578999999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
.+. ..+++|..+.|.+||+++++.|++.-.+
T Consensus 275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence 887 4688999999999999999999988665
No 57
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.77 E-value=4.7e-08 Score=100.46 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=92.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEEc
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH 243 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl~ 243 (386)
.|||||+|.||+++|+.|+ .-|.+|++|||+..... ... .....+.......+++++. +.+|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~~-~l~--------~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKTD-EFL--------AEHAKGKKIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHHH-HHH--------hhccCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence 3899999999999999984 67999999999876532 211 1100010112245677766 468999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E 302 (386)
+|....+..++ .+.+..+++|.++||++....-|...+.+.+++..+.....=|...+
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 99877778877 56778899999999999999889899999998776665544455544
No 58
>PLN02858 fructose-bisphosphate aldolase
Probab=98.77 E-value=3.1e-08 Score=113.22 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=89.4
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
.++|||||+|.||..||++| ...|.+|++||+++.... . +...+ .....+..+++++||+|++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-R--------FENAG-----GLAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 578999999999875422 1 11112 122468899999999999999
Q ss_pred CCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 245 Plt~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
|...+++.++ ....++.+++|.++||+|....-....+.+.+++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 9888888887 3457888999999999999998888899998887
No 59
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.76 E-value=9.2e-08 Score=93.24 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
..++|+|||+|.||+.+|+.| +..| .+|++||++...... ....+. ......++++.+++||+|+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~---------a~~~g~---~~~~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRAR---------ARELGL---GDRVTTSAAEAVKGADLVI 71 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHH---------HHhCCC---CceecCCHHHHhcCCCEEE
Confidence 346899999999999999987 4555 489999998654211 111111 1112356788889999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------CCCCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSE 311 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~ 311 (386)
+|+|.. .+..++ ++....+++++++++++.... .+.+++....-. ...+....|... ..|++
T Consensus 72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~----~~~~~~~~~~~~--~~~~v~~hPm~g~e~~G~~~a~~~l~~ 143 (307)
T PRK07502 72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKA----SVIAAMAPHLPE--GVHFIPGHPLAGTEHSGPDAGFAELFE 143 (307)
T ss_pred ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchH----HHHHHHHHhCCC--CCeEEeCCCCCCCcccchhhcCHHHHC
Confidence 999963 333333 455667899999999977542 223333322111 123344445421 24666
Q ss_pred CCCeEEcCCCCCCcHHHHH
Q 016620 312 MKNAIVVPHIASASKWTRE 330 (386)
Q Consensus 312 ~~nvilTPHia~~t~~~~~ 330 (386)
..++++||+-+ .+.+..+
T Consensus 144 g~~~~l~~~~~-~~~~~~~ 161 (307)
T PRK07502 144 NRWCILTPPEG-TDPAAVA 161 (307)
T ss_pred CCeEEEeCCCC-CCHHHHH
Confidence 67899999644 3444333
No 60
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.76 E-value=1.4e-07 Score=92.47 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=89.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCC----CccccccCCHHHHhhhCCE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 239 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi 239 (386)
++|||||.|.||..+|..++ ..|++|+.||+++..... .......+.+.+.+.. ........++++.+++||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 58999999999999999985 789999999998754211 1111111111111110 1122345689999999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
|+-|+|.+.+.+.-+-++..+.++++++|-.. ... +...++.+.++. .-..+++-.|.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSn-TS~-l~~s~la~~~~~-p~R~~g~Hffn 144 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIASS-TSG-LLPTDFYARATH-PERCVVGHPFN 144 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEEEC-CCc-cCHHHHHHhcCC-cccEEEEecCC
Confidence 99999999998888888888999999855433 333 456777777753 34566666554
No 61
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.75 E-value=6.8e-07 Score=86.36 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=106.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+.+....++ ..+++|+.+.+.. ..|++++..+ ..+++.. ++...-. |=|- |+....+
T Consensus 56 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 128 (301)
T PRK14194 56 LRAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENV 128 (301)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhh
Confidence 34556788876655543 3467766655422 4689998765 4455543 3333222 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+. .+-+ .+...++.-++.++ ++ .+.++.||+|+|||.| .+|+++|
T Consensus 129 g~l~------~~~~-~~~PcTp~aii~lL----~~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA 176 (301)
T PRK14194 129 GGLS------QGRD-VLTPCTPSGCLRLL----ED---------------------TCGDLTGKHAVVIGRSNIVGKPMA 176 (301)
T ss_pred hHHh------cCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCccHHHHH
Confidence 2111 1112 23344454444322 21 1357999999999996 9999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|++|.+|+++. .++.++.++||+|+++++.. +++....
T Consensus 177 ~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~--- 220 (301)
T PRK14194 177 ALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW--- 220 (301)
T ss_pred HHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---
Confidence 998 56799999997632 36788899999999999853 4555544
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
+|+|+++||+|--.
T Consensus 221 ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 LKPGAVVIDVGINR 234 (301)
T ss_pred ccCCcEEEEecccc
Confidence 89999999998644
No 62
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.74 E-value=4.3e-08 Score=94.75 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=83.3
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (386)
Q Consensus 170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~ 249 (386)
|||+|.||.++|+.| ...|.+|++|||+...... +...+ .....++.+++++||+|++|+|...+
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g-----~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVEE---------AVAAG-----AQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHHH---------HHHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence 589999999999998 4678999999998754221 11112 22346889999999999999998777
Q ss_pred hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 250 t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
...++. ...+..+++|.++||++....-....+.+.+++..+.
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 777663 4567789999999999988877778888888765443
No 63
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.74 E-value=4.6e-08 Score=95.62 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=69.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
|+|++|||||+|+||+++|+.| +.+|++|+++++......+. ....+ .. ..+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~--------a~~~G-----v~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKK--------ATEDG-----FK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHH--------HHHCC-----CE-ECCHHHHHhcCCEEEE
Confidence 5789999999999999999998 68899988765543322211 11111 11 2468889999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
++|... ....+.++....++++. +|.++.|=-
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence 999532 34455566778888886 788877754
No 64
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.73 E-value=3.9e-07 Score=88.03 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=83.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||+|.||..+|..|+ ..|.+|++||++...... .......... +.+... .......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQLES-AQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999999999999999984 679999999998754221 1100000000 000000 0112246788999
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~ 299 (386)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...+ ..+.+.++. .-...++..+
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 9999999999987776665556677788999877 78877554 456665542 2334566666
No 65
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.73 E-value=3.1e-07 Score=89.02 Aligned_cols=117 Identities=25% Similarity=0.246 Sum_probs=77.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC-------cc-ccccCCHHHHhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~ 235 (386)
++|||||+|.||.++|+.++ ..|.+|++||++....... .....-+.+...+... .. .....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 57999999999999999984 6799999999987542210 0000000011111100 00 1112344 5679
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~ 287 (386)
.||+|+.|+|.+++.+..+-.+....++++++|+ |+|.-. ...+.+.+.
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 9999999999999988887777778899999886 777654 445666554
No 66
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.71 E-value=7.8e-08 Score=91.44 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=93.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
..+.++||+||+|.||..++..|. ..|.+|++|||+.+...+ +.+.| .....+..|+.+.||+|+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~~---------f~~~G-----a~v~~sPaeVae~sDvvi 96 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCKE---------FQEAG-----ARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHHH---------HHHhc-----hhhhCCHHHHHhhcCEEE
Confidence 356789999999999999999884 689999999998865322 22222 334578999999999999
Q ss_pred EccCCChhhhhcccH--HHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620 242 LHPVLDKTTYHLINK--ERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (386)
Q Consensus 242 l~lPlt~~t~~li~~--~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalD 297 (386)
.++|...+.++++.. ..++..++|... |+.+.-+..-...|.++++.. .+-.+|
T Consensus 97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~vD 153 (327)
T KOG0409|consen 97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRFVD 153 (327)
T ss_pred EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeEEe
Confidence 999998888887744 477778888777 899998887788888888875 344455
No 67
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.71 E-value=3.2e-07 Score=91.98 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
....++-.+-.++...|... +++ |.. ......++|+||| +|.||+++|+.| +..|..|.+||++
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~----~~~----~~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~ 131 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDK----GFK----TLNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD 131 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHh----ccc----ccCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence 44455666666776666432 222 211 1223558999999 999999999998 5778999999974
Q ss_pred hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (386)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd 278 (386)
.. .+.++++++||+|++|+|... +..++ ++... +++|+++++++..+..-
T Consensus 132 ~~---------------------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~ 181 (374)
T PRK11199 132 DW---------------------------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAP 181 (374)
T ss_pred cc---------------------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHH
Confidence 21 245678889999999999753 45555 34444 89999999998854322
Q ss_pred HHHHHHHHHcCCcceEEeeccCCCCCCCC--CCCCCCCeEEcCC
Q 016620 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAIVVPH 320 (386)
Q Consensus 279 e~aL~~aL~~g~i~gaalDV~~~EP~~~~--~L~~~~nvilTPH 320 (386)
..++.+.+. + .+....|+..+ ..+....++++|+
T Consensus 182 ~~~~~~~~~-----~---~fvg~HPm~G~~~~~~~~~~vv~~~~ 217 (374)
T PRK11199 182 LQAMLAAHS-----G---PVLGLHPMFGPDVGSLAKQVVVVCDG 217 (374)
T ss_pred HHHHHHhCC-----C---CEEeeCCCCCCCCcccCCCEEEEcCC
Confidence 233333221 1 23445666322 2334445777775
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.69 E-value=9e-07 Score=84.95 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=108.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++.+..++ ..+++|+.+.+.. +.|++++..+ ..+++. +++.++-. |=|- |+....+
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (285)
T PRK14189 55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KDVD----GFHVANA 127 (285)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence 44566788887766543 3467776655432 4689998755 455544 33333322 2221 2111111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I-G~~iA 181 (386)
... ..+-++ +...+|.-++-+ +++ .+.++.|++|.|||.|.+ |+.+|
T Consensus 128 g~l------~~~~~~-~~PcTp~aii~l----L~~---------------------~~i~l~Gk~vvViGrs~iVGkPla 175 (285)
T PRK14189 128 GAL------MTGQPL-FRPCTPYGVMKM----LES---------------------IGIPLRGAHAVVIGRSNIVGKPMA 175 (285)
T ss_pred hHh------hCCCCC-CcCCCHHHHHHH----HHH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 111 112222 334445444322 221 125799999999999999 99999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ...|++|+++..+ ..++.+.+++||+|+++++ +.++++. +.
T Consensus 176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ 219 (285)
T PRK14189 176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM 219 (285)
T ss_pred HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence 998 5899999987532 1468889999999999998 3678887 55
Q ss_pred CCCCcEEEEcCCCcc
Q 016620 262 MKKEAILVNCSRGPV 276 (386)
Q Consensus 262 mk~gailIN~aRg~~ 276 (386)
+|+|+++||+|.-.+
T Consensus 220 ik~gavVIDVGin~~ 234 (285)
T PRK14189 220 VKPGATVIDVGMNRD 234 (285)
T ss_pred cCCCCEEEEcccccc
Confidence 799999999987543
No 69
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.68 E-value=5.8e-08 Score=94.73 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=66.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+++|||||+|.+|+.+|++| ...|.+|.+|+|+.. .+++++++++|+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 467899999999999999998 578999999998542 3677889999999999
Q ss_pred cCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016620 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~ 275 (386)
+|. +....++.. ... .+++++++|++++|-
T Consensus 55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL 85 (308)
T ss_pred CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence 997 466676633 323 478899999998854
No 70
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.68 E-value=9.9e-07 Score=85.19 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCC---------CccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQ---------PVTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~l~ell 234 (386)
++|+|||.|.||.++|..++ ..|.+|+.||++....... ..........+.+.. ........++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999999999999985 5689999999986532111 100000000000000 01112346888889
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n 314 (386)
+.||+|+.|+|...+.+.-+-++....++++++++..+.+ +....+.+.++.. -...++..| .|.+.++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf~-------~p~~~~~l 152 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHFA-------NEIWKNNT 152 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcCC-------CCCCcCCe
Confidence 9999999999976655555556667778999988543333 2445666665432 233444322 23567788
Q ss_pred eEEcCCCCCCcHHHHHHHH
Q 016620 315 AIVVPHIASASKWTREGMA 333 (386)
Q Consensus 315 vilTPHia~~t~~~~~~~~ 333 (386)
+.+.||-. .+.++.+.+.
T Consensus 153 vevv~~~~-t~~~~~~~~~ 170 (287)
T PRK08293 153 AEIMGHPG-TDPEVFDTVV 170 (287)
T ss_pred EEEeCCCC-CCHHHHHHHH
Confidence 88888643 4555544443
No 71
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.66 E-value=2.7e-07 Score=93.99 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=90.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-----------cccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-----------TWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ell 234 (386)
++|||||+|.||..+|..|+ . |.+|++||++.... +.. . .+..+. +....++..+.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l--------~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~ 74 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LEL--------K-NGVDVNLETTEEELREARYLKFTSEIEKI 74 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHH--------H-CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence 68999999999999999985 3 68999999987542 211 1 111110 011123334568
Q ss_pred hhCCEEEEccCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcceE-EeeccCCC
Q 016620 235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDE 302 (386)
Q Consensus 235 ~~aDiVvl~lPlt------~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL-~~--g~i~ga-alDV~~~E 302 (386)
++||++++|+|.. ++...++ .+...+.+++|.++|+.|+-.+--.+.++..+ ++ |...+- -.=+|.+|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 9999999999965 2334444 34567889999999999998887777654444 32 221111 11246678
Q ss_pred CCCC----CCCCCCCCeEE
Q 016620 303 PYMK----PGLSEMKNAIV 317 (386)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (386)
|+.. ..+...+.++.
T Consensus 155 ~v~~G~a~~~~~~~~riv~ 173 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITS 173 (425)
T ss_pred cCCCCcccccccCCCeEEE
Confidence 8853 25667777743
No 72
>PLN02712 arogenate dehydrogenase
Probab=98.60 E-value=1.7e-07 Score=100.34 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=88.3
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV 240 (386)
.-+-++|||||+|.||+.+|+.| +.+|.+|++||++...... ...+ .....++++++ .++|+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~G-----v~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLG-----VSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence 34556899999999999999998 5789999999987432111 1111 22345778865 569999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC-----CCCCCCCe
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNA 315 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~-----~L~~~~nv 315 (386)
++|+|. ..+..++..-.+..++++++++|+++-+. .+.++++... .-..++..-.|+.-+ .+-..+ +
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~----~~~~~l~~~l--~~~~~~v~~HPMaG~e~~~~g~~~~~-~ 184 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKE----FAKNLLLDYL--PEDFDIICSHPMFGPQSAKHGWDGLR-F 184 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcH----HHHHHHHHhc--CCCCeEEeeCCcCCCccccchhccCc-E
Confidence 999995 46777776644567999999999986552 2333333221 111245566676322 122333 7
Q ss_pred EEcCCCC
Q 016620 316 IVVPHIA 322 (386)
Q Consensus 316 ilTPHia 322 (386)
++.|.+.
T Consensus 185 ~~~~~~~ 191 (667)
T PLN02712 185 VYEKVRI 191 (667)
T ss_pred EEeeccC
Confidence 7776553
No 73
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.60 E-value=1.7e-06 Score=82.98 Aligned_cols=170 Identities=19% Similarity=0.292 Sum_probs=106.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++.+..++. .+++|+.+.+.. +.|++++..+ ..+++..+ +..+-. |=|- |+....+
T Consensus 55 k~~~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 127 (284)
T PRK14179 55 RSALAAGFKSEVVRLPET-ISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT 127 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence 445667888876665543 467766654432 4689998754 34544333 333222 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA 181 (386)
..+ ..+.++ +...++.-++.++ ++ .+.++.|++|+|||. |.+|+++|
T Consensus 128 g~l------~~~~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 128 GHL------WSGRPV-MIPCTPAGIMEMF----RE---------------------YNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred HHH------hCCCCC-CcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence 111 112222 4455555544322 21 225799999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|++|.+|... ..++.+.+++||+|+.+++. .+++..+.
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence 998 4679999998421 13688899999999999985 34465544
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
+|+|+++||+|--.
T Consensus 220 ik~GavVIDvgin~ 233 (284)
T PRK14179 220 VKEGAVVIDVGMNR 233 (284)
T ss_pred ccCCcEEEEeccee
Confidence 89999999998544
No 74
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.58 E-value=8e-08 Score=96.70 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=64.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell 234 (386)
..|+|++|+|||+|++|+.-|..| +..|.+|.+--|. ...... ....+ + ...+++|++
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~dG-----F-~v~~~~Ea~ 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATENG-----F-KVGTYEELI 95 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhcC-----C-ccCCHHHHH
Confidence 569999999999999999666554 4556665522221 111100 01111 2 236899999
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV 269 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI 269 (386)
++||+|++++|++ + ++.+.++.+..||+|+.|.
T Consensus 96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 9999999999998 3 7777799999999998874
No 75
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.58 E-value=1.7e-07 Score=82.17 Aligned_cols=92 Identities=32% Similarity=0.341 Sum_probs=62.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
|+||+|+|||||..|.+-|..| +..|.+|++-.+......+. .++.| + ...+.+|++++||+|++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f-~v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----F-EVMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----C-eeccHHHHHhhCCEEEE
Confidence 6899999999999999999998 78999999887765422111 12222 2 24689999999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
.+|. .....++.++....||+|+.|+=
T Consensus 67 L~PD-~~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 67 LLPD-EVQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -S-H-HHHHHHHHHHHHHHS-TT-EEEE
T ss_pred eCCh-HHHHHHHHHHHHhhCCCCCEEEe
Confidence 9995 23355667888889999987754
No 76
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.58 E-value=2.7e-07 Score=73.95 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=61.2
Q ss_pred eEEEEecChhHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
||||||+|+||+++++.| ..-| .+|+ +++|+++... ++.+.+ + ... ...+..|++++||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~-~~~~~~-------~---~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKAA-ELAKEY-------G---VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHH-HHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHH-HHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999998 4778 8999 5588876532 211111 1 111 12378899999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
|+|. +...-+..+. ....++.++|++.-|
T Consensus 68 av~p--~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKP--QQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-G--GGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EECH--HHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 9994 3333233444 556788899987643
No 77
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.57 E-value=9e-07 Score=89.95 Aligned_cols=109 Identities=23% Similarity=0.237 Sum_probs=75.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------ 233 (386)
++|+|||+|.||..+|..|+ ..|.+|++||+++.... .. . .+..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v~-~l--------~-~g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAVD-TI--------N-RGEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHHH-HH--------H-CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence 68999999999999999984 67999999999875422 11 1 111110 11233333
Q ss_pred ---hhhCCEEEEccCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 234 ---l~~aDiVvl~lPlt------~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
++.||+|++|+|.. ++...+. -+.....+++|+++|+.|...+--.+.+...+.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 24799999999964 1222222 2456778899999999999877777777776665
No 78
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=3.3e-06 Score=81.63 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=104.6
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |=|- |+..+.+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (296)
T PRK14188 55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNA 127 (296)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence 44566788877655443 3477777655432 3689998754 445543 33333322 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG-~G~IG~~iA 181 (386)
-.+. .+.+ .+...+|.-++.++ ++ .+.++.|++|+||| .|.+|+++|
T Consensus 128 g~l~------~~~~-~~~PcTp~ai~~ll----~~---------------------~~i~~~Gk~V~viGrs~~mG~PmA 175 (296)
T PRK14188 128 GRLA------TGET-ALVPCTPLGCMMLL----RR---------------------VHGDLSGLNAVVIGRSNLVGKPMA 175 (296)
T ss_pred HHHh------CCCC-CCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence 1111 1112 23445554444322 11 12469999999999 999999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|+.|.+|+.+. .++++++++||+|+++++... ++.+..
T Consensus 176 ~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~--- 219 (296)
T PRK14188 176 QLL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW--- 219 (296)
T ss_pred HHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence 998 46799999995311 256788999999999998633 454433
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
+|+|+++||+|--.
T Consensus 220 lk~GavVIDvGin~ 233 (296)
T PRK14188 220 IKPGATVIDVGINR 233 (296)
T ss_pred ecCCCEEEEcCCcc
Confidence 89999999998644
No 79
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.56 E-value=2.2e-07 Score=93.00 Aligned_cols=101 Identities=19% Similarity=0.386 Sum_probs=73.5
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiVv 241 (386)
+.+.+|.|+|+|.+|+.+++.+ +.+|++|.++|++.... +.....+ +.. ........++.+.++++|+|+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~-------g~~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEF-------GGRIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhc-------CceeEeccCCHHHHHHHHccCCEEE
Confidence 6778899999999999999997 79999999999876432 1111111 100 000111235677889999999
Q ss_pred EccCCC-hhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 242 l~lPlt-~~t~~li~~~~~~~mk~gailIN~a 272 (386)
.+++.+ ..+..+++++.++.||+++++||++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 998653 2356689999999999999999986
No 80
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.56 E-value=1.7e-06 Score=79.35 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=77.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi 239 (386)
.+++|++++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.+ + .. ..+.++++. +||+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~-~v~~~~l~~~~~Dv 88 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----AT-VVAPEEIYSVDADV 88 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CE-EEcchhhccccCCE
Confidence 579999999999999999999998 68999999999876432 2211110 1 11 123355554 7999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
++.|.. .++|+++.+..|+. .+++..+-+.+-| ..-.+.|++..+
T Consensus 89 ~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 89 FAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred EEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence 987765 45888999999974 4888888888765 444556665543
No 81
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.56 E-value=1e-06 Score=83.84 Aligned_cols=103 Identities=30% Similarity=0.377 Sum_probs=72.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
++|||||+|.||+++++.|. .-|. +|++| +|+.... .. +...+ .....+..+++++||+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~--------~~~~g-----~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DV--------FQSLG-----VKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HH--------HHHcC-----CEEeCChHHHHhcCCEE
Confidence 47999999999999999984 4565 88999 8776442 21 11112 22345778889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
++|+| ......++ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 99997 45556665 3455667889999988665 36666665553
No 82
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.53 E-value=3.2e-06 Score=81.74 Aligned_cols=128 Identities=22% Similarity=0.251 Sum_probs=80.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..+|..++ ..|.+|++||++...... ........+ ...+... .......+++ .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 57999999999999999985 678999999998654321 110000000 0111110 0012235665 47
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
++||+|+.|+|...+.+..+-.+....++++++|+ |+|.-. ..+|.+.+... -...++..+.
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence 89999999999876655554466777889999887 666544 34566665422 2344555554
No 83
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.53 E-value=5.5e-06 Score=79.69 Aligned_cols=170 Identities=16% Similarity=0.265 Sum_probs=107.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+++....++. .+++++.+.+.. +.+++++..+ ..+++. +++.++-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (286)
T PRK14175 55 KAAEKIGMISEIVHLEET-ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI 127 (286)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch
Confidence 345667888876655443 467766655432 3679998765 345554 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA 181 (386)
..+. .+.++ +...++.-++.++ ++ .+.++.|+++.|||.|. +|+.+|
T Consensus 128 g~l~------~~~~~-~~PcTp~ai~~ll----~~---------------------~~i~l~Gk~vvVIGrs~~VG~pla 175 (286)
T PRK14175 128 GKLY------IDEQT-FVPCTPLGIMEIL----KH---------------------ADIDLEGKNAVVIGRSHIVGQPVS 175 (286)
T ss_pred HhHh------cCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence 1111 11122 3344444443322 11 12469999999999998 999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ...|++|+.++++. .++.+.+++||+|+.+++. .++|.++.
T Consensus 176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~--- 219 (286)
T PRK14175 176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV--- 219 (286)
T ss_pred HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence 998 68899999887532 3577889999999999985 45677764
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
+|+|+++||+|--.
T Consensus 220 vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 VKEGAVIIDVGNTP 233 (286)
T ss_pred cCCCcEEEEcCCCc
Confidence 68999999998744
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.49 E-value=3.4e-06 Score=81.56 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=84.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (386)
++|||||.|.||..+|..++ ..|.+|+.||+++..... +.....-..+.+.+... .......++ +.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 38999999999999999985 679999999998765322 11111000111111110 011134577 4579
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~m-k~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (386)
.||+|+-|+|.+.+.+.-+-.+.-+.+ +++++|++.+.+-. ..++..+++. .-...++..|.+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence 999999999999888877766555555 88999988766544 3445555543 223556666653
No 85
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=5.3e-06 Score=79.84 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=76.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~ 235 (386)
++|+|||.|.||.++|..++ ..|.+|++||++........ ....-+.+.+.+.... +.....+.++ ++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 47999999999999999984 67999999998876432100 0000000111111000 1112345554 78
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
+||+|+.|+|-+.+.+.-+-++..+.++++++++....| +....|.+.+..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 999999999977776655556677778999988544444 555678877753
No 86
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.46 E-value=1.4e-05 Score=82.55 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=71.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----hhcCCCCccccccCC-------
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS------- 229 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------- 229 (386)
.+.+.++.|+|+|.+|...++.+ +.+|++|.++|++.... + ....++... .+.+....++....+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-E-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 35678999999999999999986 79999999999987642 2 111111100 000100011111111
Q ss_pred ---HHHHhhhCCEEEEcc--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 230 ---MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 230 ---l~ell~~aDiVvl~l--Plt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++||++-
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 455678899998887 3321 246889999999999999999864
No 87
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.45 E-value=7.1e-07 Score=79.52 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=68.0
Q ss_pred ccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
++.|++|.|||.|.+ |+.+|+.| +..|++|++.+|+. .++.+.+.+||+|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDiV 91 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADIV 91 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCEE
Confidence 599999999999996 88899998 67899999888753 2567789999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd 278 (386)
+.+.+.. ++|..+. ++++.++||+|...-+|
T Consensus 92 Isat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 92 IVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 9999842 3788875 57899999999988777
No 88
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.45 E-value=1.4e-06 Score=94.77 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=91.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++|+|||+|.||+++|+.+ +..| .+|++||++...... ....+.. .....+++++++++|+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~---------a~~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLEL---------AVSLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHH---------HHHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5566 589999998654211 1111211 11235678889999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCCCCCCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 313 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~ 313 (386)
+|.. ....++ ++....++++.++++++..+..-.+.+.+.+.. ....+..+.|.. ++.|++-.
T Consensus 71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~-----~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE-----LPAGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc-----cCCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 9953 334443 344456788999999988553223444444432 124556667753 12577888
Q ss_pred CeEEcCCCCC
Q 016620 314 NAIVVPHIAS 323 (386)
Q Consensus 314 nvilTPHia~ 323 (386)
+++++|+-..
T Consensus 144 ~~~~~~~~~~ 153 (735)
T PRK14806 144 KVILTPLAET 153 (735)
T ss_pred eEEEECCCCC
Confidence 8999997543
No 89
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.45 E-value=3.9e-06 Score=80.50 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=80.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++|+|||+|.||+++|+.|+ ..| .+|++||++....... ...+.. ....+.+++. +||+|++|
T Consensus 1 m~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLA 65 (275)
T ss_pred CEEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence 37999999999999999984 444 5899999976542211 111211 1124667765 49999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-------C---CCCCCCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-------K---PGLSEMK 313 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-------~---~~L~~~~ 313 (386)
+|.. .+..++ .+... +++++++++++.- ...+.+.+... ..+ .+....|.. . ..|++-.
T Consensus 66 vp~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~~-~~~---~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 66 IPVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPKH-IRK---NFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CcHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHHh-cCC---CEEecCCcCcCchhhHHhccHHHhCCC
Confidence 9963 334444 45556 8899999998663 34455565543 111 233334541 1 1255555
Q ss_pred CeEEcCCC
Q 016620 314 NAIVVPHI 321 (386)
Q Consensus 314 nvilTPHi 321 (386)
.++++|.-
T Consensus 135 ~~il~~~~ 142 (275)
T PRK08507 135 VVVLCDVE 142 (275)
T ss_pred eEEEecCC
Confidence 67888853
No 90
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.44 E-value=4.4e-06 Score=87.02 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=87.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|||||+|.||+.||..++ ..|.+|++||++....... ... .+. .+.+.+... .......++++ +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~-~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLA-KLVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 57999999999999999985 5699999999987653221 111 110 011112100 01223457766 5
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
++||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+ .+|.++++. .=...++..|.+-|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 6999999999998888877766666667899999 59988665 467666653 22356777777544
No 91
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.42 E-value=6.4e-07 Score=76.90 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=72.0
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
+++|+++.|+|.|.+|+.++..| ...|++ |++++|+.... ++..+.+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 68999999999999999999998 577886 99999987542 2221111 11222233456777889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCc-EEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~ga-ilIN~aRg~ 275 (386)
+.++|.. ...+.++.++..++.. ++++.|...
T Consensus 80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred EEecCCC---CcccCHHHHHHHHhhhhceeccccCC
Confidence 9999953 3378888888766544 888887643
No 92
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.42 E-value=2.8e-06 Score=73.85 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=76.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.+++++|+|.|.||+.+++.|+ ..| .+|.++|++.... +++.+.+ +... ......+++++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~-------~~~~-~~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERF-------GELG-IAIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHH-------hhcc-cceeecchhhccccCCEE
Confidence 467889999999999999999984 564 7899999986543 2211111 1000 001235677778999999
Q ss_pred EEccCCChh-hh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 241 vl~lPlt~~-t~-~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
++++|.... .. ..+... .++++.+++|++..+.. + .|.+.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 999997553 11 223322 36899999999886543 3 7777777653
No 93
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.42 E-value=1.3e-06 Score=83.72 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCCeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
...+|||||+|.||+.+++.|.+. .++++. ++|+++... +.+.+.+ +. ...+.++++++.++|+|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV 72 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence 347899999999999999988543 578876 678876442 2211111 10 113468999999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
+|+|.. +..-+.... ++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 73 i~tp~~--~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 73 EAAPAS--VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ECCCcH--HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 999953 232222333 4567666777899888899999999886543
No 94
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.40 E-value=5.4e-06 Score=84.15 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
++|||||+|.||..+|..|+ ..|.+|++||++...... ..... .+.+.+....+ ......++++++++|
T Consensus 1 mkI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKVDK-LNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDA 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHHHH-hhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhC
Confidence 37999999999999999984 678999999997754221 10000 00000000000 022345788889999
Q ss_pred CEEEEccCCChh------hhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 238 DVISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 238 DiVvl~lPlt~~------t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
|+|++|+|.... ...+. .....+.+++|.++|+.|.-.+--.+.+.+.+
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999999996432 11121 24466678999999999876655556665433
No 95
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.39 E-value=3.2e-06 Score=83.18 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=75.9
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcC-CCCccccccCCHHHHhhhCCEEEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
.++|+|||+|.||..+|..|+ ..|.+|.+|+|+.... +..... ..... ..+ ..+.......+++++++.+|+|++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 358999999999999999984 6789999999976432 111100 00000 001 001112234688888999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg-~~vd--e~aL~~aL~~ 288 (386)
++|.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 81 ~v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 81 AVPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred ECchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 99964 22 5666889999999999997 4332 4566666644
No 96
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.38 E-value=1.9e-06 Score=82.85 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=72.9
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+++|||||+|+||.++|+.|. .-| .+|++++|+.....+.+...+ + .....+..+++.+||+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCE
Confidence 3568999999999999999885 444 689999987644333221111 1 1224577888899999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
|++|+|. .+....+ .+....++++.++|++.-| +..+.|.+.+.
T Consensus 69 Vilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 69 LFLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred EEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 9999994 3344444 4455567889999998554 35566666553
No 97
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.37 E-value=6.9e-06 Score=79.46 Aligned_cols=130 Identities=17% Similarity=0.249 Sum_probs=81.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh----hhhhhhhcCCCC--------ccccccCCHH
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA----YGQFLKANGEQP--------VTWKRASSMD 231 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~----~~~~~~~~~~~~--------~~~~~~~~l~ 231 (386)
++|+|||.|.||..+|..++ ..|.+|++||++...... +.... ... ....+... .......++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRN-LVEKGKMSEDEAKAIMARIRTSTSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHH-HHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence 57999999999999999984 679999999998754221 00000 000 00011100 001122345
Q ss_pred HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (386)
Q Consensus 232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (386)
+.+++||+|+.|+|...+...-+-++.-+.++++++|++.+.|- ....+.+.+.. .-...++..|.+
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~-~~r~ig~hf~~P 147 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALER-KDRFIGMHWFNP 147 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCC-cccEEEEecCCC
Confidence 56789999999999766544444455556788999998877763 55667776653 234455555543
No 98
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.35 E-value=5e-06 Score=86.42 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=88.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHH
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEV 233 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~el 233 (386)
=++|||||.|.||..||..++ ..|.+|++||++....... ... .+.. +...+... .......++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 357999999999999999985 6799999999987653211 000 1100 11112110 01223467766
Q ss_pred hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (386)
Q Consensus 234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (386)
+++||+|+.|+|.+.+.+..+-.+.-..++++++|. |+|.-.+ ..|.++++. .-...++..|.+-|.
T Consensus 82 l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 82 LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 569999999999888877776666667788888876 7766444 567777753 356778887775553
No 99
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.34 E-value=1.1e-05 Score=83.95 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhh---hhcCCCCc-cccccCCHHHHhhhCCE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFL---KANGEQPV-TWKRASSMDEVLREADV 239 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~---~~~~~~~~-~~~~~~~l~ell~~aDi 239 (386)
++|||||.|.||.++|..|+ ..|.+|++||+++..... .......... ........ ......++++++++||+
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 47999999999999999985 669999999998765321 1000000000 00000000 12335688899999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
|+.++|...+.+..+-.+.-..++++++|... ..++ ....|.+.+..
T Consensus 84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss-Tsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 84 IQESVPERLDLKRRVLAEIDAAARPDALIGSS-TSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc-CCCC-CHHHHHhhcCC
Confidence 99999987765654445555667888765444 4343 35577766643
No 100
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.33 E-value=2.7e-05 Score=75.99 Aligned_cols=120 Identities=21% Similarity=0.214 Sum_probs=71.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~ 235 (386)
++|+|||.|.||.++|..|+ ..|.+|++||++....... .....-..+...+... .......++.++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 47999999999999999984 6799999999986532110 0000000011111110 01123468889999
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
+||+|+.|+|...+....+-.+.-+..++..++...+. . .....+.+.+..
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~ 132 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG 132 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence 99999999997655444333333333455555543333 2 345667777753
No 101
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.33 E-value=6.3e-06 Score=83.05 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=85.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhhhcC-CCCccccccCCHHHHhhhCCEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANG-EQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV 240 (386)
++|+|+|+|.||..+|..++ .|.+|++||++..... ...+. +.+.+.+.. ..........+..+++++||+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv~-~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA--QNHEVVALDILPSRVA-MLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHHH-HHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 37999999999999998764 4899999999876522 11110 000000000 0011122223467788999999
Q ss_pred EEccCCChhh-------hhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----C
Q 016620 241 SLHPVLDKTT-------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----P 307 (386)
Q Consensus 241 vl~lPlt~~t-------~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~ 307 (386)
++|+|..-+- ..+. -+...+ +++|.++|+.|.-.+=-.+.+.+.+.+. +. +|.+|.+.. .
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~---~v---~~~PE~l~~G~a~~ 150 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE---NI---IFSPEFLREGKALY 150 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC---cE---EECcccccCCcccc
Confidence 9999965211 1111 123344 7999999999998887778888777643 22 246666532 2
Q ss_pred CCCCCCCeE
Q 016620 308 GLSEMKNAI 316 (386)
Q Consensus 308 ~L~~~~nvi 316 (386)
.++..|.|+
T Consensus 151 d~~~p~rvv 159 (388)
T PRK15057 151 DNLHPSRIV 159 (388)
T ss_pred cccCCCEEE
Confidence 344545554
No 102
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.32 E-value=2e-05 Score=76.87 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=71.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh---hhhhhhcCCC---CccccccCCHHHHhhhCCE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY---GQFLKANGEQ---PVTWKRASSMDEVLREADV 239 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~l~ell~~aDi 239 (386)
++|+|||.|.||.++|..|+ ..|.+|++||++...... ..... .......... ........++++.+++||+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGALER-ARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHH-HHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 57999999999999999984 678999999987654211 11100 0000000000 0001223578888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
|++|+|...+...-+-.+.-..++++++++..+.| +....|.+.+.
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 99999976543333334444456777777544444 23557776664
No 103
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=2.1e-06 Score=82.48 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=71.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
++|||||+|+||+++++.|. .-| .+|+++||+.... +...+ ..+ .....+..+++.+||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~-------~~g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASD-------KYG-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHH-------hcC-----cEEeCCcHHHHhhCCEEE
Confidence 47999999999999999874 334 3799999976542 21111 111 123457788899999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
+|+|. .....++ ++.-..++++.++|++.-|- +.+.|.+.+
T Consensus 69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AGi--~i~~l~~~l 109 (272)
T PRK12491 69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAGK--SIKSTENEF 109 (272)
T ss_pred EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCCC--cHHHHHHhc
Confidence 99994 5555555 44445568889999998774 455666555
No 104
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=2.8e-05 Score=74.66 Aligned_cols=169 Identities=17% Similarity=0.240 Sum_probs=105.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++ ..+++|+...+.. +.|++++..+ ..+++. .++.++-. |=|- |+....+
T Consensus 61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 133 (287)
T PRK14176 61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KDAD----GFHPYNM 133 (287)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----ccChhhh
Confidence 44566788887766544 3467766654432 4689998765 345443 33333322 2221 1111111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA 181 (386)
|-...+.+ .+...++.-++.++ + +.+.++.|+++.|||.|. +|+.+|
T Consensus 134 ------g~l~~g~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla 181 (287)
T PRK14176 134 ------GKLMIGDE-GLVPCTPHGVIRAL----E---------------------EYGVDIEGKNAVIVGHSNVVGKPMA 181 (287)
T ss_pred ------hhHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence 11111222 23445555444322 1 012479999999999999 999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ...|+.|.+++.. ..++.+..++||+|+.++.- .+++..+ .
T Consensus 182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~ 225 (287)
T PRK14176 182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M 225 (287)
T ss_pred HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence 998 5789999988742 13678889999999998864 4567666 4
Q ss_pred CCCCcEEEEcCCC
Q 016620 262 MKKEAILVNCSRG 274 (386)
Q Consensus 262 mk~gailIN~aRg 274 (386)
+|+|+++||+|--
T Consensus 226 vk~gavVIDvGin 238 (287)
T PRK14176 226 VKEGAVIFDVGIT 238 (287)
T ss_pred cCCCcEEEEeccc
Confidence 6899999999863
No 105
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.28 E-value=3.5e-06 Score=82.28 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=68.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++|+|||+|.||..+|..|+ ..|.+|.+|+++.... +...... .... .....+.+.....+++++++.||+|++|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINADR-ENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHcC-cccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 47999999999999999985 6789999999976432 1111000 0000 0000001122346788889999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+|. ..+..++ .+....+++++++|+++.|-
T Consensus 79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 996 4555555 34556678899999997553
No 106
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.22 E-value=1.1e-05 Score=77.62 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+|+|||+|.||+++++.|. ..| .+|++|+++...........+ . ......+..+++.++|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999874 445 689999986543222211110 0 0112357788899999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
+|+|. .....++ .+....++++..+|.+.-| +..+.|.+.+
T Consensus 70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 99993 2333333 3344456778899998777 5666777655
No 107
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.21 E-value=7e-05 Score=71.95 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=107.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++. .+++|+.+.+.. ..+++++..+ ..+++.. ++.++-. |=|- |+....+
T Consensus 54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 126 (285)
T PRK14191 54 KACERVGMDSDLHTLQEN-TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KDVD----GFHPLNI 126 (285)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH
Confidence 445667888876655543 466666644432 3689998765 4555543 3333322 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+ ..+-+ .+...++.-++.++ ++ .+.++.|++|.|||-| .+|+.+|
T Consensus 127 g~l------~~g~~-~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla 174 (285)
T PRK14191 127 GKL------CSQLD-GFVPATPMGVMRLL----KH---------------------YHIEIKGKDVVIIGASNIVGKPLA 174 (285)
T ss_pred HHH------hcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence 111 12222 23455555554322 21 1247999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|+.|.+++.+. .++.+.+++||+|+.+++. .+++..+.+
T Consensus 175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v-- 219 (285)
T PRK14191 175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV-- 219 (285)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence 998 57899999875422 2567889999999999963 567887765
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
|+|+++||+|--.
T Consensus 220 -k~GavVIDvGi~~ 232 (285)
T PRK14191 220 -KKGAVVVDIGINR 232 (285)
T ss_pred -CCCcEEEEeeccc
Confidence 8999999998644
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.20 E-value=2.9e-05 Score=75.23 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (386)
Q Consensus 177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~ 256 (386)
|+.||++|+ .-|.+|++||++.....+...+ .+...| .....+..+++++||+|++|+|..+.+..++ .
T Consensus 32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 899999984 6799999999876532111000 112222 2235688999999999999999888888887 5
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeccCCCCC
Q 016620 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPY 304 (386)
Q Consensus 257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~gaalDV~~~EP~ 304 (386)
..++.+++|+++||+|+ ++.+.++..|+..- +..--+-|..-+|-
T Consensus 101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP~ 146 (341)
T TIGR01724 101 TIIEHVPENAVICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHPA 146 (341)
T ss_pred HHHhcCCCCCEEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence 68899999999999977 55577777776511 12233445555554
No 109
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.20 E-value=6.3e-06 Score=72.53 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=64.6
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
+|+|+|.|+.|.++|..|+ .-|.+|..|+|+.... +...+ ...... ..-..+.......+++++++++|+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~la-~~g~~V~l~~~~~~~~-~~i~~-~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA-DNGHEVTLWGRDEEQI-EEINE-TRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH-HCTEEEEEETSCHHHH-HHHHH-HTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCEEEEEeccHHHH-HHHHH-hCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 6899999999999999984 7789999999986432 11111 000000 00001112223578999999999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|.. ...-+-++....++++..+|++..|=
T Consensus 78 Ps~--~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ--AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG--GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH--HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 952 23333456666778999999998763
No 110
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.18 E-value=0.00015 Score=75.28 Aligned_cols=227 Identities=18% Similarity=0.189 Sum_probs=119.1
Q ss_pred HHHHHhCCCeEEEecCCC--CCCCHHHHHHH---h-----cCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccc
Q 016620 30 INLLIEQDCRVEICTQKK--TILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN 99 (386)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~--~~~~~~e~~~~---~-----~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~ 99 (386)
.+.|.+.|+++.+-.... ..++.++..+. + .+++|.|+.- ..+ +.+.++.+++ |-.++....-..|.
T Consensus 23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~P-~~~e~~~l~~-g~~li~~l~p~~~~ 99 (509)
T PRK09424 23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NAP-SDDEIALLRE-GATLVSFIWPAQNP 99 (509)
T ss_pred HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence 566777788876644321 22344444321 0 0136766632 222 3455677765 43455555554454
Q ss_pred cChhHHhhCCcEEecCCCCC----------chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcc-cccccCCCeE
Q 016620 100 VDVNAANKYGIAVGNTPGVL----------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTV 168 (386)
Q Consensus 100 id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~-~g~~l~g~~v 168 (386)
=-++.+.++||.+..-.-.- =.++|+.+= .|-+..+.+.+ +. .++... .-....|.+|
T Consensus 100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~---~~~g~~taaG~~pg~kV 168 (509)
T PRK09424 100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GR---FFTGQITAAGKVPPAKV 168 (509)
T ss_pred HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cc---cCCCceeccCCcCCCEE
Confidence 45677788998887621111 112222221 11111111111 11 011000 0013569999
Q ss_pred EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhc--CCCCcccccc--CC--------HHHH
Q 016620 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KAN--GEQPVTWKRA--SS--------MDEV 233 (386)
Q Consensus 169 gIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~--~~--------l~el 233 (386)
.|+|.|.+|...+..+ +.+|++|+++|++..... ..+.++... ... +....++... .+ +.+.
T Consensus 169 lViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle--~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 169 LVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE--QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred EEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 9999999999999985 799999999999875432 122221110 000 0000000000 01 1222
Q ss_pred hhhCCEEEEccCCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 016620 234 LREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 234 l~~aDiVvl~lPlt~~-t~~li~~~~~~~mk~gailIN~aR 273 (386)
+..+|+|+.|...... ...++.++.++.||+|++++++|-
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 3579999999864221 234567899999999999999974
No 111
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.17 E-value=2.1e-06 Score=79.34 Aligned_cols=134 Identities=14% Similarity=0.202 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH-hcCCcEEEE-EcCC
Q 016620 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLY 198 (386)
Q Consensus 121 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~-~d~~ 198 (386)
...++|.+..++...|++. +|. ...+|+|+|+|.+|+.+++.+. ...|+++.+ +|++
T Consensus 61 ~~~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 3445689999999888775 121 2357999999999999998531 357888775 5765
Q ss_pred hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEEccCCChhh---hhcccHHHHhcCCCCcEEEEcCC
Q 016620 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl~lPlt~~t---~~li~~~~~~~mk~gailIN~aR 273 (386)
+... . .. ..........++++++++ .|+|++|+|.+... ..+.......-|...++.+|+.+
T Consensus 120 ~~~~-~----------~~--i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 120 PEKI-G----------TK--IGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred hhhc-C----------CE--eCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 4321 0 00 011112233567888765 99999999976642 22222233344566788899999
Q ss_pred CcccCHHHHHHHHHc
Q 016620 274 GPVIDEVALVEHLKQ 288 (386)
Q Consensus 274 g~~vde~aL~~aL~~ 288 (386)
|.+|+.++|..+|..
T Consensus 187 ~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 187 DVIVRNVDLTVELQT 201 (213)
T ss_pred CCEEEEechHHHHHH
Confidence 999999999999974
No 112
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=0.00015 Score=69.67 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=107.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++.+..++. .+++|+.+.+.. +.+++++..+ ..+++.. ++.++-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (284)
T PRK14190 55 KAAEKVGIYSELYEFPAD-ITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINV 127 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhH
Confidence 445667888877655543 466666654432 3678998754 3455443 3333222 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA 181 (386)
... ..+.++ +...++.-++.++ ++ .+.++.|+++.|||- +.+|+++|
T Consensus 128 g~l------~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 175 (284)
T PRK14190 128 GRM------MLGQDT-FLPCTPHGILELL----KE---------------------YNIDISGKHVVVVGRSNIVGKPVG 175 (284)
T ss_pred HHH------hcCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence 111 122222 3445555444322 21 225799999999998 56799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|+.++.+. .++++.+++||+|+.++.. .++|+.+.+
T Consensus 176 ~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i-- 220 (284)
T PRK14190 176 QLL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV-- 220 (284)
T ss_pred HHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence 998 57789999876421 3678899999999999964 558888776
Q ss_pred CCCCcEEEEcCCCcc
Q 016620 262 MKKEAILVNCSRGPV 276 (386)
Q Consensus 262 mk~gailIN~aRg~~ 276 (386)
|+|+++||+|.-.+
T Consensus 221 -k~gavVIDvGi~~~ 234 (284)
T PRK14190 221 -KEGAVVIDVGVNRL 234 (284)
T ss_pred -CCCCEEEEeecccc
Confidence 89999999987553
No 113
>PRK07680 late competence protein ComER; Validated
Probab=98.11 E-value=1.3e-05 Score=76.92 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred eEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
+|||||+|.||+.+++.|. ..| .+|.+|+|+.... ......+ . +.....+..+++..+|+|++
T Consensus 2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence 6999999999999999874 445 3799999987542 2111100 0 12224577888899999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
|+|. .....++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 69 av~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 69 CVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred ecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 9983 3344544 4455567888899999854 36666666553
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.10 E-value=9.3e-06 Score=77.14 Aligned_cols=104 Identities=16% Similarity=0.263 Sum_probs=69.6
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
+|||||+|+||+++++.|. ..|. .+.+|+|+.... +.+.+.+ + +.....+..+++.++|+|++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence 7999999999999999875 3343 367888876542 2211110 0 122346788889999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
+| ......++.. + .++++.++|.++- -+..+.|.+.+..+
T Consensus 69 v~-p~~~~~vl~~--l-~~~~~~~vis~~a--g~~~~~l~~~~~~~ 108 (258)
T PRK06476 69 VR-PQIAEEVLRA--L-RFRPGQTVISVIA--ATDRAALLEWIGHD 108 (258)
T ss_pred eC-HHHHHHHHHH--h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence 99 3444555432 3 2578889998773 36777787777543
No 115
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.08 E-value=2e-05 Score=71.06 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=78.9
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh-hhhhhhhcCCC-------CccccccCCHHHHhhh
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE 236 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~ 236 (386)
+|+|||.|.||+.+|..++ ..|++|..||++...... ++... +....+..... ........+++++. +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999885 679999999998764221 22221 11111111111 01122357888888 9
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
||+|+=++|-+-+.+.-+-.+.-+.++++++|...+.+ +....|.+.+. ..-...++-.|.
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence 99999999988777776767777788999887554332 34466666665 334566676664
No 116
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=0.00016 Score=69.66 Aligned_cols=171 Identities=21% Similarity=0.252 Sum_probs=107.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+++....++. .+++|+.+.+.. +.|++++..+ ..++...+ +..+-. |=|- |+..+.+
T Consensus 52 k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 124 (287)
T PRK14173 52 RQAKALGLRSQVEVLPES-TSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KDVD----GFHPLNV 124 (287)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhh
Confidence 445667888877665443 467776654432 3689998765 44555433 333222 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA 181 (386)
..+. .+.+ .+...++.-++.++ + +.+.++.|+++.|||- +.+|+++|
T Consensus 125 g~l~------~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla 172 (287)
T PRK14173 125 GRLW------MGGE-ALEPCTPAGVVRLL----K---------------------HYGIPLAGKEVVVVGRSNIVGKPLA 172 (287)
T ss_pred HHHh------cCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence 1111 1112 23445555444332 1 1125799999999998 56799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|+.+..+. .++++..++||+|+.++.- .+++..+.+
T Consensus 173 ~lL-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~v-- 217 (287)
T PRK14173 173 ALL-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAVGR----PHLITPEMV-- 217 (287)
T ss_pred HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence 998 56789998876421 3688899999999999974 577887664
Q ss_pred CCCCcEEEEcCCCcc
Q 016620 262 MKKEAILVNCSRGPV 276 (386)
Q Consensus 262 mk~gailIN~aRg~~ 276 (386)
|+|+++||+|.-.+
T Consensus 218 -k~GavVIDVGin~~ 231 (287)
T PRK14173 218 -RPGAVVVDVGINRV 231 (287)
T ss_pred -CCCCEEEEccCccc
Confidence 79999999987553
No 117
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=0.00046 Score=66.34 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=106.7
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++. .+++|+.+.+.. ..|++++..+ ..+++. +++.++-. |=|- |+..+.+
T Consensus 54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~ 126 (284)
T PRK14170 54 KRTEEAGMKSVLIELPEN-VTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNV 126 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 445667888876655543 466666654432 4689998755 345554 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+. ..-+ .+...++.-++.++ + +.+.++.||++.|||-+ .+|+++|
T Consensus 127 g~l~------~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrS~iVGkPla 174 (284)
T PRK14170 127 GNLF------IGKD-SFVPCTPAGIIELI----K---------------------STGTQIEGKRAVVIGRSNIVGKPVA 174 (284)
T ss_pred hHHh------CCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 1111 1112 24455555555433 1 12357999999999996 5699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|+.+... ..++.+..++||+|+.+++. .+++..+.
T Consensus 175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~--- 218 (284)
T PRK14170 175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDY--- 218 (284)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHH---
Confidence 998 5678999987542 13688889999999999974 56787766
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 219 vk~GavVIDvGin~ 232 (284)
T PRK14170 219 IKPGAIVIDVGMDR 232 (284)
T ss_pred cCCCCEEEEccCcc
Confidence 47999999998654
No 118
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.04 E-value=4.4e-05 Score=71.35 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=104.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (386)
..+.++++.|+|.|.+|+.+|+.| ...|+ +++.+||+. ... +..+...+. +...... . ..++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence 468899999999999999999988 46787 499999983 211 111111111 1111011 1 13687
Q ss_pred HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCC
Q 016620 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE 311 (386)
Q Consensus 232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~ 311 (386)
+.+.++|+|+.+.| .++++++.++.|+++.++...+.. ..|.-+.+|.+.|. . ...|-. +. ...+
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga-~-i~a~G~--~~----~~~Q 157 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGA-D-IVATGR--SD----FPNQ 157 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCC-c-EEEeCC--CC----Cccc
Confidence 88899999999997 467888999999999988888843 34554444444432 1 122221 11 1357
Q ss_pred CCCeEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCC
Q 016620 312 MKNAIVVPHIASAS-----KWTREGMATLAALNVLGKIKGYP 348 (386)
Q Consensus 312 ~~nvilTPHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~ 348 (386)
..|+++-|-++-.. ....+.|...+++-+-.+..-+.
T Consensus 158 ~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~ 199 (226)
T cd05311 158 VNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEV 199 (226)
T ss_pred cceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccc
Confidence 78999999876522 12235566666677766655443
No 119
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.03 E-value=2e-05 Score=75.36 Aligned_cols=107 Identities=20% Similarity=0.383 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|||||+|.||+.+++.+.+. .+++ +.++|++.... +.+.+. .+ ...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~-------~~-----~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK-------TG-----AKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh-------cC-----CeeECCHHHHhcCCCEEEEc
Confidence 4799999999999999987432 3566 45688876432 211111 01 12356899999999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~ 290 (386)
.|. +...-+..+ .++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 69 a~~--~~~~~~~~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 ASV--NAVEEVVPK---SLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CCh--HHHHHHHHH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 974 222212222 3445655666777777763 46777776654
No 120
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.03 E-value=3e-05 Score=79.67 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEEccCCChhhhh
Q 016620 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (386)
Q Consensus 176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl~lPlt~~t~~ 252 (386)
||+.+|+.|+ .-|.+|.+|||++.... .+.+ ..+. ..+...+.+++|+++. +|+|++++|..+.+..
T Consensus 1 MG~~mA~nL~-~~G~~V~v~nrt~~~~~-~l~~-------~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIA-SHGYTVAVYNRTPEKTD-EFLA-------EEGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHH-hCCCeEEEECCCHHHHH-HHHH-------hhCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 7999999984 67999999999876532 2111 0010 0123345789998875 8999999999988888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (386)
Q Consensus 253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP 303 (386)
++ ...+..+.+|.++||.+....-|...+.+.+++..+.....=|...++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 88 568899999999999999999999999999998877766665666553
No 121
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.03 E-value=7.2e-06 Score=69.67 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=53.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
.-.+|||||.|+.|..+++.| +.-|..|.++ +|+....... . ...+ .....+++|++..+|++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a--~---------~~~~--~~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA--A---------AFIG--AGAILDLEEILRDADLVFI 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH--H---------C--T--T-----TTGGGCC-SEEEE
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc--c---------cccc--cccccccccccccCCEEEE
Confidence 446899999999999999998 5778888765 5554332111 0 0111 1234577899999999999
Q ss_pred ccCCChhhhhcccHHHHhc--CCCCcEEEEcC
Q 016620 243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS 272 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~--mk~gailIN~a 272 (386)
++|.+ . ..-+.++.-.. .++|.+++-+|
T Consensus 75 avpDd-a-I~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 75 AVPDD-A-IAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -S-CC-H-HHHHHHHHHCC--S-TT-EEEES-
T ss_pred EechH-H-HHHHHHHHHHhccCCCCcEEEECC
Confidence 99964 2 33333444444 68999988874
No 122
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=1.9e-05 Score=75.66 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=108.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+.+....++ ..+++|+.+.+.. ..+++++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~ 121 (279)
T PRK14178 49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNL 121 (279)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH
Confidence 44566788887665544 3467777655432 4689998765 455553 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+ ..+.++ +...++.-++.++ ++ .+.+++|++|.|+|.+ ..|+.+|
T Consensus 122 g~l------~~~~~~-~~PcTp~av~~ll----~~---------------------~~i~l~Gk~V~ViGrs~~vGrpla 169 (279)
T PRK14178 122 GRL------VSGLPG-FAPCTPNGIMTLL----HE---------------------YKISIAGKRAVVVGRSIDVGRPMA 169 (279)
T ss_pred HHH------hCCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCccccHHHH
Confidence 111 112222 3444554444322 21 1247999999999999 9999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..+|++|..+.++. .++++.+++||+|+.+++. .+++.++.+
T Consensus 170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v-- 214 (279)
T PRK14178 170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV-- 214 (279)
T ss_pred HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence 998 68999998876532 3678889999999999974 277888774
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
|+|+++||+|-..
T Consensus 215 -k~GavVIDVgi~~ 227 (279)
T PRK14178 215 -KPGATVIDVGINQ 227 (279)
T ss_pred -CCCcEEEEeeccc
Confidence 9999999998644
No 123
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=3.4e-05 Score=74.13 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+++|+++.|||.|. +|+.+|.+| ...|++|++++++. .++++.+++||+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI 205 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADL 205 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCE
Confidence 479999999999999 999999998 57899999886532 368889999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
|+.+++. .+++..+ .+|+|+++||+|--
T Consensus 206 vi~avG~----p~~v~~~---~vk~gavVIDvGin 233 (285)
T PRK10792 206 LVVAVGK----PGFIPGE---WIKPGAIVIDVGIN 233 (285)
T ss_pred EEEcCCC----cccccHH---HcCCCcEEEEcccc
Confidence 9999963 3356664 46899999999853
No 124
>PLN00203 glutamyl-tRNA reductase
Probab=97.99 E-value=2.2e-05 Score=81.73 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=71.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... ..+...+ +.....+....++.+.+.++|+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence 47899999999999999999998 57887 799999987542 2221111 10111122235677889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCC-------CcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~-------gailIN~aRg~ 275 (386)
+.|+| ....+|.++.++.+++ .-+|||.+-..
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 99987 4566888888887643 23788877643
No 125
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=0.00052 Score=65.91 Aligned_cols=170 Identities=17% Similarity=0.266 Sum_probs=106.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++.++-. |=|- |+....+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 125 (282)
T PRK14169 53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence 44566788887766544 3467766655432 3689998755 345443 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+. .+.++ ....++.-++.++ ++ .+.++.|+++.|||-+ .+|+++|
T Consensus 126 g~l~------~~~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla 173 (282)
T PRK14169 126 GRLW------ANEPT-VVASTPYGIMALL----DA---------------------YDIDVAGKRVVIVGRSNIVGRPLA 173 (282)
T ss_pred HHHh------cCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1111 12222 3455565554332 11 1257999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|+.|+.+..+ ..++++..++||+|+.+++- .++++.+.
T Consensus 174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~--- 217 (282)
T PRK14169 174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADA--- 217 (282)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence 998 5779999887532 13688899999999999974 56788775
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 218 vk~GavVIDvGin~ 231 (282)
T PRK14169 218 VKPGAVVIDVGISR 231 (282)
T ss_pred cCCCcEEEEeeccc
Confidence 57999999998644
No 126
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.98 E-value=1.6e-05 Score=70.76 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc------------cccccC
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRAS 228 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~ 228 (386)
.+...+|.|+|.|..|+..++.+ +++|++|..+|.+...... ....+.....-. ..... ......
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLRQ-LESLGAYFIEVDYEDHLERKDFDKADYYEHPESYES 94 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHHH-HHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHHh-hhcccCceEEEcccccccccccchhhhhHHHHHhHH
Confidence 46778999999999999999996 7999999999987653211 111110000000 00000 011123
Q ss_pred CHHHHhhhCCEEEEc-cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 229 ~l~ell~~aDiVvl~-lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
.+.+.++.+|+|+++ +--....-.++.++.++.||+|++++|+|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 577889999999864 33345667899999999999999999985
No 127
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.98 E-value=3.4e-05 Score=68.08 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=57.1
Q ss_pred cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.||++.|||-+. +|++++.+| ...|+.|..++.+. .++++.+++||+
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI 82 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI 82 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence 479999999999985 999999998 67899999876432 467888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
|+.+... .++|..+ .+|+|+++||++.-..
T Consensus 83 VVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 83 VVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp EEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred Eeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence 9999974 5667665 4689999999987554
No 128
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=0.00078 Score=64.58 Aligned_cols=186 Identities=17% Similarity=0.219 Sum_probs=111.7
Q ss_pred CcEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHH
Q 016620 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA 81 (386)
Q Consensus 15 ~~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~ 81 (386)
++.++...+-+.+. | .+..++.|.+++....++ ..+++|+.+.+.. +.+++++..+ ..++.. +++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 112 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK 112 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 34444445444432 2 244566788887665544 3467766644432 3689998764 345544 3333
Q ss_pred hhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccc
Q 016620 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (386)
Q Consensus 82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~ 161 (386)
++-. |=|- |+....+..+ ...-++ +...++.-++.+ +++ .+.
T Consensus 113 I~p~--KDVD----Gl~~~n~g~l------~~g~~~-~~PcTp~av~~l----L~~---------------------~~i 154 (278)
T PRK14172 113 IDAN--KDID----CLTFISVGKF------YKGEKC-FLPCTPNSVITL----IKS---------------------LNI 154 (278)
T ss_pred cCcc--cccC----ccCHhhHHHH------hCCCCC-CcCCCHHHHHHH----HHH---------------------hCC
Confidence 3322 2221 1111111111 111122 344455444422 221 124
Q ss_pred ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
++.||++.|||-+ .+|+++|.+| ..-|+.|..++.+. .++.+..++||+|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIv 205 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKADIL 205 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence 7999999999995 5799999998 57789999886421 3688889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+.+++. .++|..+. .|+|+++||+|--.
T Consensus 206 IsAvGk----p~~i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 206 VVAIGR----PKFIDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred EEcCCC----cCccCHHH---cCCCcEEEEeeccc
Confidence 999974 56788766 57999999997533
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.96 E-value=1.8e-05 Score=80.62 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=70.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|++|+|+|.|.||+.+++.| ...| .+|++++|+.... ..+.. ..+.. .....++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~-------~~g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAK-------ELGGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHH-------HcCCe---EeeHHHHHHHHhhCCEE
Confidence 47899999999999999999998 5788 6899999987542 11111 11111 11224677888999999
Q ss_pred EEccCCChhhhhcccHHHHhcCC----CCcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk----~gailIN~aRg~ 275 (386)
+.|++ .+..+++.+.++.+. ...+++|.+...
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 99987 456678888777652 245888887643
No 130
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.96 E-value=0.00054 Score=67.62 Aligned_cols=172 Identities=17% Similarity=0.231 Sum_probs=105.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHh---cC--CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~---~~--~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+.+....++ ..+++|+.+.+ .+ +.|++++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KDVD----Gl~p~N~ 198 (364)
T PLN02616 126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KDVD----GFHPLNI 198 (364)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 44566788776555443 34677766555 22 4789998754 455543 33333322 3221 2222221
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
-.+...| +-++ +...++.-++ .++++ .+.++.||++.|||-+ .+|+++|
T Consensus 199 G~L~~g~----~~~~-f~PCTp~avi----elL~~---------------------y~i~l~GK~vvVIGRS~iVGkPLa 248 (364)
T PLN02616 199 GRLAMRG----REPL-FVPCTPKGCI----ELLHR---------------------YNVEIKGKRAVVIGRSNIVGMPAA 248 (364)
T ss_pred HHHhcCC----CCCC-CCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCccccHHHH
Confidence 1111100 0122 3444454433 22221 1257999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|..+..+ ..++++..++||+|+.++.. .+++..+.
T Consensus 249 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~--- 292 (364)
T PLN02616 249 LLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVGQ----PNMVRGSW--- 292 (364)
T ss_pred HHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH---
Confidence 998 5678999987542 24688899999999999974 66788766
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 293 vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 IKPGAVVIDVGINP 306 (364)
T ss_pred cCCCCEEEeccccc
Confidence 57999999998543
No 131
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00059 Score=65.58 Aligned_cols=168 Identities=15% Similarity=0.220 Sum_probs=104.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++. .+++|+.+.+.. +.|++++..+ ..+++. +++.++-. |=|- |+....+
T Consensus 56 k~~~~~Gi~~~~~~l~~~-~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 128 (284)
T PRK14177 56 KACHKVGMGSEMIRLKEQ-TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF 128 (284)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence 445667888877655442 466665544322 4689998765 344443 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA 181 (386)
..+ ..+.+ .+...++.-++.++ ++ .+.++.||++.|||- ..+|+++|
T Consensus 129 g~l------~~g~~-~~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 129 GKL------SMGVE-TYLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred HHH------HcCCC-CCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 111 11212 23444554444322 21 125799999999999 45799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|+.|+.++.+. .++.+..++||+|+.++.- .+++..+.
T Consensus 177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~--- 220 (284)
T PRK14177 177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADW--- 220 (284)
T ss_pred HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHH---
Confidence 998 57799999886422 3688889999999999974 56787766
Q ss_pred CCCCcEEEEcCC
Q 016620 262 MKKEAILVNCSR 273 (386)
Q Consensus 262 mk~gailIN~aR 273 (386)
.|+|+++||+|-
T Consensus 221 ik~gavVIDvGi 232 (284)
T PRK14177 221 ISEGAVLLDAGY 232 (284)
T ss_pred cCCCCEEEEecC
Confidence 579999999985
No 132
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.95 E-value=7.6e-05 Score=70.05 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=66.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcC--CcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~f--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+++|||||.|.+|+.+++.+++.. ..+ +++++++.....+.+...+ + .....++++++.++|+|
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV 70 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence 3578999999999999999874321 233 7778775333222221111 1 12246788999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
++++|.. ..+.++ ++.-..++ +.++|+++=| ++.+.|.+.+..
T Consensus 71 iiavp~~-~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 71 VLAMPPS-AHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred EEecCHH-HHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 9999942 223333 22222334 5688888765 455566666644
No 133
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.93 E-value=0.00017 Score=68.71 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.++|||||+|+||+++++.|.+ -+ -++++++++.... ......+..+++.+||+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence 4689999999999999998753 33 2589998864320 011235677888899999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH 320 (386)
++|+|. ..+..++. +....++++.++..++- +..+.+.+.+.... -...+..+.| -+...-..+++|.
T Consensus 62 ilavkp-~~~~~vl~-~i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~---~vvr~mPn~p----~~~g~g~t~i~~~ 129 (260)
T PTZ00431 62 VLAVKP-DLAGKVLL-EIKPYLGSKLLISICGG---LNLKTLEEMVGVEA---KIVRVMPNTP----SLVGQGSLVFCAN 129 (260)
T ss_pred EEEeCH-HHHHHHHH-HHHhhccCCEEEEEeCC---ccHHHHHHHcCCCC---eEEEECCCch----hHhcceeEEEEeC
Confidence 999883 34455543 33344555555444433 33555555543221 1223333333 2444456677774
No 134
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=0.001 Score=64.09 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=105.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++ ..+++++.+.+.. ..|++++..+ ..+++. +++..+-. |=|- |+...++
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~ 127 (288)
T PRK14171 55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLNV 127 (288)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccch
Confidence 44566788887665543 3467777655432 4689998765 445544 33333322 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
|-........+...++.-++ .++++ .+.++.||++.|||-+ .+|+++|
T Consensus 128 ------g~l~~g~~~~~~PcTp~av~----~lL~~---------------------y~i~l~GK~vvViGrS~iVGkPla 176 (288)
T PRK14171 128 ------GYLHSGISQGFIPCTALGCL----AVIKK---------------------YEPNLTGKNVVIIGRSNIVGKPLS 176 (288)
T ss_pred ------hhhhcCCCCCCcCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 11111211223444554433 22221 1247999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|..+..+ ..++.+..++||+|+.++.- .+++..+.
T Consensus 177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~--- 220 (288)
T PRK14171 177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEY--- 220 (288)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHH---
Confidence 998 5678999877642 14688899999999999974 56888766
Q ss_pred CCCCcEEEEcCCC
Q 016620 262 MKKEAILVNCSRG 274 (386)
Q Consensus 262 mk~gailIN~aRg 274 (386)
.|+|+++||+|--
T Consensus 221 vk~GavVIDvGin 233 (288)
T PRK14171 221 FNPESIVIDVGIN 233 (288)
T ss_pred cCCCCEEEEeecc
Confidence 5799999999853
No 135
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=0.00078 Score=64.80 Aligned_cols=170 Identities=19% Similarity=0.198 Sum_probs=105.9
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+++.+..++ ..+++|+.+.+.. ..+++++..+ ..++.. +++.++-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (284)
T PRK14193 55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh
Confidence 44566788887665543 3467766654432 3689998765 445544 34443332 3221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA 181 (386)
..+. .+.++ ....++.-++.++ + +.+.++.|+++.|||- +.+|+++|
T Consensus 128 g~l~------~~~~~-~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla 175 (284)
T PRK14193 128 GRLV------LNEPA-PLPCTPRGIVHLL----R---------------------RYDVELAGAHVVVIGRGVTVGRPIG 175 (284)
T ss_pred hHHh------CCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 2111 12222 2344554444322 1 1235799999999998 56799999
Q ss_pred HHHHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620 182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (386)
Q Consensus 182 ~~L~~~--fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~ 259 (386)
.+|. . -++.|..+... ..++++..++||+|+.++.. .++|..+.
T Consensus 176 ~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~- 221 (284)
T PRK14193 176 LLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADM- 221 (284)
T ss_pred HHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHH-
Confidence 9884 4 68999887642 13688899999999999974 46788766
Q ss_pred hcCCCCcEEEEcCCCc
Q 016620 260 ATMKKEAILVNCSRGP 275 (386)
Q Consensus 260 ~~mk~gailIN~aRg~ 275 (386)
.|+|+++||+|.-.
T Consensus 222 --ik~GavVIDvGin~ 235 (284)
T PRK14193 222 --VKPGAAVLDVGVSR 235 (284)
T ss_pred --cCCCCEEEEccccc
Confidence 57999999998754
No 136
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.92 E-value=2.7e-05 Score=70.49 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=78.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
++|+|+|+|.+|..+|..|+ ..|.+|++||.+.... +..... ..+.+++.. ...+.....+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 58999999999999999985 7899999999887532 111110 001111110 001122346788889999
Q ss_pred CEEEEccCCChhhhhcc--------cHHHHhcCCCCcEEEEcCCCcccCHHHH-HHHHHcCCcceEEee-ccCCCCCCC-
Q 016620 238 DVISLHPVLDKTTYHLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK- 306 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li--------~~~~~~~mk~gailIN~aRg~~vde~aL-~~aL~~g~i~gaalD-V~~~EP~~~- 306 (386)
|++++|+|...+..+-. -+...+.++++.++|.-|.-.+=-.+.+ ...|++..-...-++ +|.+|-+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99999998433222221 2345667789999999999777555533 344443222112222 245565432
Q ss_pred ---CCCCCCCCeEE
Q 016620 307 ---PGLSEMKNAIV 317 (386)
Q Consensus 307 ---~~L~~~~nvil 317 (386)
..+...|+|++
T Consensus 158 ~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 158 RAIEDFRNPPRVVG 171 (185)
T ss_dssp SHHHHHHSSSEEEE
T ss_pred CcchhccCCCEEEE
Confidence 24667777753
No 137
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.91 E-value=0.0001 Score=63.75 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=65.3
Q ss_pred ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
+.+++|++|.|+|- +..|+.+|.+| ...|++|..++++. .++++.+++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 35799999999998 56789999988 57899999887432 36788899999
Q ss_pred EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+|+.+++.. ++|+.+. +|+|++++|++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999999853 6687766 68999999998654
No 138
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=0.00074 Score=64.99 Aligned_cols=187 Identities=17% Similarity=0.252 Sum_probs=112.2
Q ss_pred CcEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHH
Q 016620 15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA 81 (386)
Q Consensus 15 ~~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~ad~vi~~~~--~~~~~~-~l~~ 81 (386)
++-++...+-+++. + .+..++.|.+++....++ ..+++|+.+.+. ++.+++++..+ ..+++. +++.
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~ 106 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQA 106 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhc
Confidence 34444445444432 2 234566788887765544 346776665552 24789998765 445554 3333
Q ss_pred hhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccc
Q 016620 82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN 161 (386)
Q Consensus 82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~ 161 (386)
++-. |=|- |+....+..+ +.+....+...++.-++-++ ++ .+.
T Consensus 107 I~p~--KDVD----Gl~p~n~g~l------~~g~~~~~~PcTp~avi~lL----~~---------------------~~i 149 (287)
T PRK14181 107 ISPD--KDVD----GLHPVNMGKL------LLGETDGFIPCTPAGIIELL----KY---------------------YEI 149 (287)
T ss_pred cCcc--cCcc----cCChhhHHHH------hcCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence 3322 3221 2222221111 11111123445554444322 21 125
Q ss_pred ccCCCeEEEEecC-hhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 162 LLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
++.||++.|||-+ .+|+++|.+|. .- ++.|..+..+ ..++++.+++
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ 200 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKT 200 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhh
Confidence 7999999999995 57999999884 44 7888877542 1468899999
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
||+|+.+++. .+++..+. .|+|+++||+|--.
T Consensus 201 ADIvV~AvG~----p~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 201 ADIIIAAIGV----PLFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CCEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence 9999999974 46788766 47999999998644
No 139
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=5e-05 Score=73.24 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=64.3
Q ss_pred cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.|+++.|+|.|. .|+++|..| ...|++|..+++.. .++.+.+++||+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI 205 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI 205 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence 479999999999998 999999998 57889999987622 356777899999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+.+++. + +++..+. +|+|++++|++-..
T Consensus 206 vI~AtG~-~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 206 IVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence 9999963 2 2676654 68999999997644
No 140
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.90 E-value=0.00067 Score=66.65 Aligned_cols=172 Identities=14% Similarity=0.240 Sum_probs=107.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+.+.+..++ ..+++|+.+.+.. +.|++++..+ ..+++.. ++...-. |=|- |+..+.+
T Consensus 109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~ 181 (345)
T PLN02897 109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNV 181 (345)
T ss_pred HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHH
Confidence 44566788887765544 3467777655432 4689998754 4555543 3333222 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA 181 (386)
-.+... .....+...++.-++.++ + +.+.++.||++.|||-+. +|+.+|
T Consensus 182 G~L~~~-----~~~~~~~PCTp~avi~LL----~---------------------~~~i~l~GK~vvVIGRS~iVGkPla 231 (345)
T PLN02897 182 GNLAMR-----GREPLFVSCTPKGCVELL----I---------------------RSGVEIAGKNAVVIGRSNIVGLPMS 231 (345)
T ss_pred HHHhcC-----CCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence 212111 000123455555555443 1 123579999999999965 699999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|..+.... .++++..++||||+.++.. .+++..+.
T Consensus 232 ~LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~--- 275 (345)
T PLN02897 232 LLL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSW--- 275 (345)
T ss_pred HHH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence 988 56789998875421 3678889999999999974 56788766
Q ss_pred CCCCcEEEEcCCCc
Q 016620 262 MKKEAILVNCSRGP 275 (386)
Q Consensus 262 mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 276 vk~GavVIDVGin~ 289 (345)
T PLN02897 276 LKPGAVVIDVGTTP 289 (345)
T ss_pred cCCCCEEEEccccc
Confidence 57999999998643
No 141
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.90 E-value=7.1e-05 Score=59.00 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=53.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 358899999999999999999998 455 567776641 99
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
++.+.+. .+.+.++....+++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9999975 4455566688899999999864
No 142
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.87 E-value=6e-05 Score=74.24 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
-+++||||.|.+|+..++.++..+ ..+|.+||++.+.. +.+.+. +++. +.......+.++++++||+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~---g~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDY---EVPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhh---CCcEEEeCCHHHHhccCCEEEEe
Confidence 468999999999999777654333 35899999987653 222221 1111 11233457899999999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+|. +.-++..+. +|+|+.+..+|...
T Consensus 200 T~s---~~P~~~~~~---l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 200 TPS---RKPVVKADW---VSEGTHINAIGADA 225 (325)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCCCC
Confidence 984 456666654 58999999998543
No 143
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=0.001 Score=63.96 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=112.6
Q ss_pred cEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHh
Q 016620 16 YRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAAL 82 (386)
Q Consensus 16 ~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~---~--~ad~vi~~~~--~~~~~~-~l~~l 82 (386)
+-++...+-+++. + .+.-++.|..++.+..++ ..+++++.+.+. . +.+++++..+ ..+++. +++.+
T Consensus 33 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I 111 (282)
T PRK14182 33 LTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAI 111 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 4444445444432 2 244566788887766544 346776665542 1 4689998765 455543 33333
Q ss_pred hccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016620 83 SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL 162 (386)
Q Consensus 83 ~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~ 162 (386)
+-. |=| |.+. ....|-.+.+.++.....+|.-++-++ ++ .+.+
T Consensus 112 ~p~--KDV-------DGl~---~~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~ 154 (282)
T PRK14182 112 SPA--KDA-------DGFH---PFNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVD 154 (282)
T ss_pred Ccc--cCc-------CCCC---HhHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCC
Confidence 322 222 2221 111111222223323444554444322 21 1247
Q ss_pred cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+.|+++.|||-+ .+|+++|.+| ..-++.|..+..+. .++++..++||+|+
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14182 155 PKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILV 205 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 999999999995 5799999998 56789999876421 36788899999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
.+++- .++|..+. .|+|+++||+|--.
T Consensus 206 ~AvGk----~~~i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 206 AAIGK----AELVKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred EecCC----cCccCHHH---cCCCCEEEEeecee
Confidence 99974 66788766 47999999998644
No 144
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.86 E-value=5.1e-05 Score=74.25 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=63.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+.|++|+|+|.|.||+.+++.| +..| .+|++++|+..... .+...+ +. ......++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra~-~la~~~-------g~---~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERAE-ELAKEL-------GG---NAVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHHH-HHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence 6899999999999999999997 4555 57999999865421 111111 11 1112235678889999999
Q ss_pred EccCCChhhhhcccHHHHhcC-CCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~m-k~gailIN~aR 273 (386)
.++|...- ..++ +..+... +++.++||.+.
T Consensus 244 ~at~~~~~-~~~~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 244 SATGAPHY-AKIV-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ECCCCCch-HHHH-HHHHhhCCCCCeEEEEeCC
Confidence 99995432 2222 3333322 35678888775
No 145
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.86 E-value=8.2e-05 Score=68.03 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=64.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++++|+|.|+||+.+|++++ ..|.+|.+-+++.++....-.+. .+. . ....+.++..+.+|+|++++|
T Consensus 2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~-------l~~---~-i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAA-------LGP---L-ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHh-------hcc---c-cccCChHHHHhcCCEEEEecc
Confidence 57999999999999999985 78999998876665433321111 111 1 123577899999999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
... ... +.++...... |.++|++.-.
T Consensus 70 ~~a-~~~-v~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FEA-IPD-VLAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHH-HHh-HHHHHHHHhC-CeEEEecCCC
Confidence 733 222 2355555565 8899988653
No 146
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.85 E-value=6.1e-05 Score=71.71 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=65.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
++|+|||+|.||+.+++.|. .-| .+|.+|+|+.... +...+.| + .....+.++++.++|+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence 57999999999999999874 456 6899999986542 2111100 1 1123577788899999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
|+|.. ....++ ++....+ +.++|.+.-|- ..+.|.+.+.
T Consensus 69 ~v~~~-~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKPQ-VMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCHH-HHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 99842 333333 2222223 45777776653 4556665554
No 147
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00016 Score=67.08 Aligned_cols=116 Identities=24% Similarity=0.321 Sum_probs=87.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiVvl 242 (386)
+++|.||+|+||..++++| ..-|.+|++||+++....+ +...+ .....+++|+ +..--+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~---------~~~~g-----a~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEE---------LKDEG-----ATGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence 4789999999999999998 6789999999998876432 12222 2234577776 455678999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~ 299 (386)
.+|-..-|..+| +++-.+|.+|-++|+-+-..--|.....+.|++..|. -+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 999876666665 5677789999999999988887877788888876554 34553
No 148
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.82 E-value=0.00029 Score=68.53 Aligned_cols=146 Identities=24% Similarity=0.283 Sum_probs=93.5
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCCc--------cccccCCHHHH
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEV 233 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~el 233 (386)
-++|||||.|.||+.+|..++. -|.+|..+|++........ ......++ +.+.... ......++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~-~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERAL-AYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHH-HHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence 3689999999999999998753 5699999999854321111 10001111 1111100 011123333 5
Q ss_pred hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCC
Q 016620 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM 312 (386)
Q Consensus 234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~ 312 (386)
+++||+|+=++|-+-+.++-+-++.-...+++++| .|+|+ +...+|.++++ ..-...++..|.+-| +..+
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~~-----~m~L 150 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPVP-----LMPL 150 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCCC-----ccee
Confidence 78999999999988887776767777778999988 67766 44577888884 445678887775433 4444
Q ss_pred CCeEEcCCCC
Q 016620 313 KNAIVVPHIA 322 (386)
Q Consensus 313 ~nvilTPHia 322 (386)
--|+-+.+++
T Consensus 151 VEvI~g~~T~ 160 (307)
T COG1250 151 VEVIRGEKTS 160 (307)
T ss_pred EEEecCCCCC
Confidence 4566666554
No 149
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.82 E-value=4.4e-05 Score=77.89 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=67.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|++|+|+|.|.||+.+++.| +..|+ +|++++|+.... ..+... .+. ......++.+.+.++|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~-------~g~---~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEE-------FGG---EAIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHH-------cCC---cEeeHHHHHHHhccCCEE
Confidence 37899999999999999999997 57897 799999986542 111111 111 111224566778899999
Q ss_pred EEccCCChhhhhcccHHHHhcC-----CCCcEEEEcCCC
Q 016620 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRG 274 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~m-----k~gailIN~aRg 274 (386)
+.|++. ...++..+.++.+ +++.++||.+-.
T Consensus 247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 999873 3456677766554 245788887653
No 150
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.82 E-value=6.7e-05 Score=73.80 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=65.1
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh---hhhhhh--hh--cCCCCccccccCCHHHHhhhCCEE
Q 016620 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT---AYGQFL--KA--NGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~---~~~~~~--~~--~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
|||+|||.||+.+++.+.+.-++++.+........ ..+.. .|+... .. ......+.....++++++.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~-~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDF-EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHH-HHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 69999999999999986444578887664322221 11111 121100 00 000001111234699999999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
+.|.| .+.+..+.+.+..|+.+++|+-.-
T Consensus 80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 99987 678889999999999999998753
No 151
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.81 E-value=9e-05 Score=72.64 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=64.5
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
...++|+|||.|.+|+.+++.+...++ .+|.+|+|+.... +++.+.+ ...+ .......++++++.+||+|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a-~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKA-EALAAEL----RAQG---FDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEE
Confidence 356789999999999999986543345 5799999987542 3332221 1111 11223578899999999998
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
++.|.. ..++..+ .+++|+.+.-++.
T Consensus 195 ~aT~s~---~pvl~~~---~l~~g~~i~~ig~ 220 (314)
T PRK06141 195 CATLST---EPLVRGE---WLKPGTHLDLVGN 220 (314)
T ss_pred EeeCCC---CCEecHH---HcCCCCEEEeeCC
Confidence 888853 4566654 4689985444443
No 152
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=0.0016 Score=63.12 Aligned_cols=171 Identities=15% Similarity=0.202 Sum_probs=104.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++ ..+++|+...+.. +.+++++..+ ..+++. +++.++-. |=|- |+..+.+
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 126 (297)
T PRK14167 54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENV 126 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 44566788887766554 3466666644432 3689998765 345543 33333322 2221 2221111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+ ..+.+ .+...+|.-++.++ + +.+.++.|+++.|||-+ .+|+++|
T Consensus 127 g~l------~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla 174 (297)
T PRK14167 127 GRL------VAGDA-RFKPCTPHGIQKLL----A---------------------AAGVDTEGADVVVVGRSDIVGKPMA 174 (297)
T ss_pred HHH------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence 111 11112 23445555444322 1 11247999999999995 5799999
Q ss_pred HHHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620 182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (386)
Q Consensus 182 ~~L~~~f---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~ 258 (386)
.+|.+.+ ++.|..+... ..++++..++||+|+.++.- .+++..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (297)
T PRK14167 175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM 222 (297)
T ss_pred HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 9885443 7899877532 23688899999999999964 56787765
Q ss_pred HhcCCCCcEEEEcCCCc
Q 016620 259 LATMKKEAILVNCSRGP 275 (386)
Q Consensus 259 ~~~mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 223 ---ik~gaiVIDvGin~ 236 (297)
T PRK14167 223 ---LSEGATVIDVGINR 236 (297)
T ss_pred ---cCCCCEEEEccccc
Confidence 57999999998544
No 153
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.78 E-value=0.00014 Score=71.80 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCC----CCccccccCCHHHHhhhCCEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE----QPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~ell~~aDiV 240 (386)
++|+|||.|.||..+|..|+ ..|.+|.+||+.... +.. ...+-.... .+. .+.......+. +.+..+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARIG--DEL-RAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHHH--HHH-HhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 57999999999999999984 568999999985421 111 100000000 000 00001112344 567899999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
++++|.. +....+ ++....++++.+++.+.-| +-..+.+.+.+...++
T Consensus 78 il~vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 78 LVTVKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred EEEecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 9999854 445544 4566667889999888654 4445667777655444
No 154
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.76 E-value=5.6e-05 Score=72.54 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=74.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+...+|.|+|.|-+|..-||.. -++|++|...|.+..+ +....+.|.. ...........+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~------rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGG------RVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCc------eeEEEEcCHHHHHHHhhhccEEE
Confidence 35667899999999999999984 7999999999988643 3222222211 00111223456889999999998
Q ss_pred Ecc--CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 242 LHP--VLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 242 l~l--Plt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
.++ |. .+.-.++.++.+++||||+++||++
T Consensus 237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence 764 43 3456788899999999999999984
No 155
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.72 E-value=0.00011 Score=69.91 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620 180 YARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (386)
Q Consensus 180 iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~ 258 (386)
+|+.|++ ++..+|++||+++...... ...+.. .....+ .+.++++|+|++|+|.. .+..++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~---~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGII---DEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSS---SEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCe---eeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHh
Confidence 3555532 4458999999988764322 112221 112233 57789999999999963 344444 566
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCCCCCCCCeEEcCCCC
Q 016620 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMKNAIVVPHIA 322 (386)
Q Consensus 259 ~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~nvilTPHia 322 (386)
...+++|+++++++.-+.--.+++.+.+..+ ..+....|+. ...|++-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~------~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG------VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS------GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc------cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 6779999999999986653344444444422 2333344552 23688889999999855
No 156
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.72 E-value=0.00015 Score=70.78 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=68.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
...++++|+|.|.+|+..++.++..++. +|.+|+|+... .+.+.+.+ ... ..... ..++++++.++|+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~---~~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RAL---GPTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----Hhc---CCeeE-ECCHHHHhhcCCEEE
Confidence 4567899999999999999987444564 69999998754 23333222 111 11111 468899999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
.|+|.+ ..++.. .+|+|+.++.+|.-.
T Consensus 194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 194 TATTSR---TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred EccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence 999953 466654 269999999998643
No 157
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00017 Score=69.24 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=64.8
Q ss_pred cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.|+++.|||-+ .+|+++|.+| ..-|+.|..+... ..++.+..++||+
T Consensus 153 i~l~Gk~vvViGrS~~VG~Pla~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADI 203 (281)
T PRK14183 153 IDVKGKDVCVVGASNIVGKPMAALL-LNANATVDICHIF----------------------------TKDLKAHTKKADI 203 (281)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCE
Confidence 57999999999998 8999999998 5678999877532 1367888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+.++.. .+++..+. .|+|+++||+|--.
T Consensus 204 vV~AvGk----p~~i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 204 VIVGVGK----PNLITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred EEEecCc----ccccCHHH---cCCCcEEEEeeccc
Confidence 9999974 56777766 47999999998533
No 158
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.68 E-value=0.00059 Score=74.14 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=85.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..||..++ ..|.+|+.||++...... +... .+.. ..+.+... .......+++ .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNK-QVERGKIDGAKMAGVLSSIRPTLDYA-GF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999885 669999999998764221 1111 1111 11111110 0122235664 46
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (386)
++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|.++++. .-..+++..|.+
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P 454 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence 9999999999988888877778888889999888543332 445667777753 345677776643
No 159
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.66 E-value=0.00035 Score=63.38 Aligned_cols=94 Identities=21% Similarity=0.317 Sum_probs=65.8
Q ss_pred cccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc------cCCHH
Q 016620 159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------ASSMD 231 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 231 (386)
.+.+++||++.|||-+. +|+++|.+| ..-|+.|+.+|.+.-.. | .. +.. .+... ..++.
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~---~--------~~-~~~-~~hs~t~~~~~~~~l~ 121 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV---F--------TR-GES-IRHEKHHVTDEEAMTL 121 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc---c--------cc-ccc-cccccccccchhhHHH
Confidence 46789999999999965 699999998 56799999997432110 0 00 000 00000 11278
Q ss_pred HHhhhCCEEEEccCCChhhhhc-ccHHHHhcCCCCcEEEEcCC
Q 016620 232 EVLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (386)
Q Consensus 232 ell~~aDiVvl~lPlt~~t~~l-i~~~~~~~mk~gailIN~aR 273 (386)
+.+++||+|+.+++. .++ +..+. .|+|+++||+|-
T Consensus 122 ~~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 122 DCLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred HHhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 899999999999984 455 77766 479999999984
No 160
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.66 E-value=0.001 Score=68.69 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=89.3
Q ss_pred CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHh--------hhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
++|+|+|+|.+|..+|-.|++ +.|.+|++||.+.... +.... ...+.+.+. .........++++.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~~--~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQC--RGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHHh--hcCCEEEEcCHHHHHhc
Confidence 579999999999999998863 4578999999876542 21100 000001110 00012233567888999
Q ss_pred CCEEEEccCCChh-----------hhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee-ccCCC
Q 016620 237 ADVISLHPVLDKT-----------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE 302 (386)
Q Consensus 237 aDiVvl~lPlt~~-----------t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD-V~~~E 302 (386)
||++++|+|.... ...+. .++.-+.+++|.++|.-|.-.+=-.+.+...+.+.. .|.-+. +|.+|
T Consensus 79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE 157 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE 157 (473)
T ss_pred CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence 9999999863221 11221 234556679999999988866655667777776521 121122 24566
Q ss_pred CCCC----CCCCCCCCeEE
Q 016620 303 PYMK----PGLSEMKNAIV 317 (386)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (386)
-+.. ..+...|+|++
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 5532 25667777764
No 161
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.66 E-value=0.00036 Score=64.71 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=62.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|+||| .|.||+.+|+.|+ ..|.+|.+++|+.+.. +.....+...+...+. .... ...+..+.++.+|+|++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence 4799997 9999999999984 6688999999876542 2111111000000010 0001 1236678899999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|.. ....++ ++.-..++ +.++|+++-|-
T Consensus 77 p~~-~~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 77 PWD-HVLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred CHH-HHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 953 233333 22223344 57899987764
No 162
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.62 E-value=0.00057 Score=74.37 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=86.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..||..++ ..|++|+.||++....... ... .+....+ .+... .......+++ .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVK-RKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999875 5699999999987642211 111 1111111 11110 1122235664 56
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
++||+|+=++|-+-+.+.-+-.+.-+.++++++|. |+|. ++...|.+.++. .-..+++..|.
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCC-ccceEEEeccC
Confidence 89999999999888888777788888899999884 5554 455777777754 34577777775
No 163
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.00028 Score=68.25 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=71.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|+|+|.|.||..+|..|+ ..|.+|..|+| .. ..+...+ .+-..... +..........+.++....+|+|++|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 47999999999999999985 56899999998 32 2221111 00000000 000000111345667778999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
|.. ++...+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 77 k~~-~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 77 KAY-QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred ccc-CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 953 334433 3344445778888877555 34466777776554443
No 164
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.59 E-value=0.00094 Score=72.51 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=84.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..||..++ ..|.+|+.+|++...... +... .+....+ .+... .......++ +.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~-~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSY-AGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCH-HHh
Confidence 57999999999999999885 569999999998764221 1111 1111111 11100 012223455 346
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
++||+|+=++|-+-+.+.-+-.+.-+.++++++|. |+|. ++..+|.++++. .-...++-.|.
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999999888877777777778899999884 4444 445667777754 34566777664
No 165
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.59 E-value=0.00026 Score=69.86 Aligned_cols=101 Identities=29% Similarity=0.376 Sum_probs=70.7
Q ss_pred ccccCCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
+..+.|++|.|+|. |.||+.+++.|+...| .+++.++|+... ....... + . .....++++.+.++
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~e----l---~-----~~~i~~l~~~l~~a 216 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAE----L---G-----GGKILSLEEALPEA 216 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHH----h---c-----cccHHhHHHHHccC
Confidence 35799999999999 8999999999853455 489999987543 2211110 0 0 01234688999999
Q ss_pred CEEEEccCCChhhhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620 238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 279 (386)
Q Consensus 238 DiVvl~lPlt~~t~~-li~~~~~~~mk~gailIN~aRg~~vde 279 (386)
|+|+.+.-.. .. +++.+. ++++.++||+|+..=||.
T Consensus 217 DiVv~~ts~~---~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 217 DIVVWVASMP---KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CEEEECCcCC---cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 9998877532 33 477764 479999999999776653
No 166
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.59 E-value=0.0003 Score=68.94 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=60.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
+++||+|.|..|+.-++.++.-++. +|.+|+|+... .++|.+. ++. .......+.+.++++++||+|+.|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence 5899999999999999877555665 79999998754 2333332 222 2334445689999999999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
|.+..+ -+++.+ .+++|+.++.++....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 854432 667665 4689999999987543
No 167
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00032 Score=67.80 Aligned_cols=171 Identities=21% Similarity=0.238 Sum_probs=105.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+.-++.|.+.+.+..++ ..+++|+.+.+.. +.+++++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 127 (297)
T PRK14186 55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KDAD----GLHPLNL 127 (297)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH
Confidence 44566788887665543 3467666654432 3689998755 345443 33333322 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+ ..+.++ +...+|.-++-++ ++ .+.++.|+++.|||-+ .+|+++|
T Consensus 128 g~l------~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvVIGrS~iVGkPla 175 (297)
T PRK14186 128 GRL------VKGEPG-LRSCTPAGVMRLL----RS---------------------QQIDIAGKKAVVVGRSILVGKPLA 175 (297)
T ss_pred HHH------hCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 111 111122 3344454444322 21 1357999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-|+.|..+... ..++++..++||+|+.+++- .+++..+.
T Consensus 176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~--- 219 (297)
T PRK14186 176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEM--- 219 (297)
T ss_pred HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence 998 5779999887542 13688899999999999984 46787766
Q ss_pred CCCCcEEEEcCCCcc
Q 016620 262 MKKEAILVNCSRGPV 276 (386)
Q Consensus 262 mk~gailIN~aRg~~ 276 (386)
.|+|+++||+|--.+
T Consensus 220 ik~gavVIDvGin~~ 234 (297)
T PRK14186 220 VKPGAVVVDVGIHRL 234 (297)
T ss_pred cCCCCEEEEeccccc
Confidence 579999999986553
No 168
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.58 E-value=0.001 Score=72.09 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=83.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..+|..++...|++|+.||++....... ... .+.. ..+.+... .......+++ .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 5799999999999999987424699999999987532111 110 1111 01111100 1122235664 57
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|.++++. .-..+++.-|.
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence 8999999999988888877777777888999888543332 344667777753 34567777664
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.58 E-value=0.00035 Score=67.26 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=62.0
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.++++.|+|.|.+|+++++.| ...| .+|++++|+.... ++..+.+ .... .... ..++.+.+..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~----~~~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLF----GALG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh----hhcc--ceee--cccchhccccCCEE
Confidence 57889999999999999999998 5789 6899999986542 2221111 1000 0011 12345677889999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+.++|..-....-...-.+..++++++++++.-
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence 999996432110000111233455666666654
No 170
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.57 E-value=0.00039 Score=63.08 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=64.7
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhh
Q 016620 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE 236 (386)
Q Consensus 161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~ 236 (386)
..++++++.|+|. |.+|+.+++.|+ ..|.+|..++|+... .+...+.+.+ ..+ ..... ....++.+.+++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFG-EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcC-CcEEEeeCCCHHHHHHHHhc
Confidence 4688999999995 999999999984 678899999987643 2222211100 000 00111 112334577889
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v 277 (386)
+|+|+.+.|.... ..+. .-...+++.+++|+.+...+
T Consensus 98 ~diVi~at~~g~~--~~~~--~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEK--LAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCEEEECCCCCce--echh--hhcccCceeEEEEccCCCCC
Confidence 9999999986442 1111 11123456778877775543
No 171
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00036 Score=67.04 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=105.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+.+.+..++ ..+++|+.+.+.. +.+++++..+ ..+++.. ++.++-. |=|- |+..+.+
T Consensus 53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 125 (282)
T PRK14166 53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINV 125 (282)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence 44566788877665544 2467766655432 4689998755 3455433 3333222 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+. .+....+...++.-++.++ ++ .+.++.|+++.|||-+ .+|+++|
T Consensus 126 g~l~------~g~~~~~~PcTp~avi~lL----~~---------------------y~i~l~Gk~vvVvGrS~iVGkPla 174 (282)
T PRK14166 126 GYLN------LGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMA 174 (282)
T ss_pred HHHh------cCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence 2111 1101123445555444322 21 1257999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
.+| ..-++.|..+..+. .++++..++||+|+.++.- .+++..+.
T Consensus 175 ~lL-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~--- 218 (282)
T PRK14166 175 TML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM--- 218 (282)
T ss_pred HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---
Confidence 998 56799999876422 3688899999999999974 66788775
Q ss_pred CCCCcEEEEcCCC
Q 016620 262 MKKEAILVNCSRG 274 (386)
Q Consensus 262 mk~gailIN~aRg 274 (386)
.|+|+++||+|--
T Consensus 219 vk~GavVIDvGin 231 (282)
T PRK14166 219 VKEGVIVVDVGIN 231 (282)
T ss_pred cCCCCEEEEeccc
Confidence 5799999999853
No 172
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.00043 Score=66.05 Aligned_cols=100 Identities=25% Similarity=0.380 Sum_probs=70.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
++|||||+|+||++++.-|. .-| .+|++.+|+.+.+. ...+.| + .. ...+..++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~-------g---~~--~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEY-------G---VV--TTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHc-------C---Cc--ccCcHHHHHhhCCEEE
Confidence 57999999999999999874 455 58999999887653 222222 1 11 1467788999999999
Q ss_pred EccCCChhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 016620 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk---~gailIN~aRg~~vde~aL~~aL~ 287 (386)
+++. |+.. ++.++.++ ++.++|.++=|- ..+.|.+.+.
T Consensus 68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~ 108 (266)
T COG0345 68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG 108 (266)
T ss_pred EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence 9996 3222 45566665 688999998764 4556666654
No 173
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.56 E-value=0.00042 Score=68.69 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred eEEEEecChhHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHh
Q 016620 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVL 234 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~-~------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell 234 (386)
+|+|||.|+.|.++|..|+. + |+.+|..|.+.. .....+......+..+ ..-..+.......++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 58999999999999998854 2 448999998732 1222111111000000 0000121222346899999
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
+.||+|++++|. ...+.+ -.+.-..++++..+|+++-|=-
T Consensus 81 ~~ADiIIlAVPs-~~i~~v-l~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGI-CKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECCh-HHHHHH-HHHHHhhcCCCCEEEEEeCCcc
Confidence 999999999995 222333 3445556788899999988743
No 174
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.56 E-value=0.00043 Score=66.85 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=70.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|+|+|.|.||..+|..|+ ..|.+|..++++... .+..... +-... .+..........+.+++ ..+|+|++++|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence 47999999999999999985 568999999986433 1111100 00000 01000001123456665 89999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
.. ++..++ +.....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus 76 ~~-~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 76 AY-QLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred cc-cHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 53 344433 3344556777888877776 33355666666544444
No 175
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.53 E-value=0.00029 Score=67.56 Aligned_cols=91 Identities=27% Similarity=0.364 Sum_probs=65.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
-|.||+|+|||||+-|.+=|..| +--|.+|++=-|.....-.. ..+.| + ...+.+|++++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dG-----f-~V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDG-----F-KVYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcC-----C-EeecHHHHhhcCCEEE
Confidence 58999999999999999999998 68899877654433321110 11112 2 2468899999999999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEE
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAIL 268 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gail 268 (386)
+.+|.. ....++..+.-..|+.|+.|
T Consensus 80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 80 ILLPDE-QQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence 999963 33556666777888888744
No 176
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.51 E-value=0.00051 Score=67.62 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
..++++|||.|.+|+..++.++...+. +|.+|+|+.... +++.+.+ ... .+.....+.++++++.++|+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~--~~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSK--FNTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence 467899999999999988776444555 699999987542 3332221 111 11122335788999999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
|+|.. .-++. ..+|+|+.++.++.-
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence 99954 34554 456999999988764
No 177
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0005 Score=66.38 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=65.0
Q ss_pred cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.||++.|||-+ .+|+++|.+| ..-++.|+.++... .++.+..++||+
T Consensus 156 i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADI 206 (294)
T PRK14187 156 RNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKADI 206 (294)
T ss_pred CCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCE
Confidence 57999999999995 5799999998 57899999876422 368889999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+.++.. .+++..+.+ |+|+++||+|--.
T Consensus 207 vVsAvGk----p~~i~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 207 LVAAVGI----PNFVKYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred EEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence 9999974 567887664 6999999998644
No 178
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00052 Score=65.93 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=63.6
Q ss_pred cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.|+++.|||-+ .+|+++|.+| ..-|++|..+.... .++.+..++||+
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADI 204 (282)
T PRK14180 154 IKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADI 204 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCE
Confidence 57999999999985 5799999998 56799999876422 367888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
|+.+++- .++|..+. .|+|+++||+|-
T Consensus 205 vIsAvGk----p~~i~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 205 LIVAVGK----PNFITADM---VKEGAVVIDVGI 231 (282)
T ss_pred EEEccCC----cCcCCHHH---cCCCcEEEEecc
Confidence 9999974 56777765 579999999985
No 179
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.48 E-value=0.00058 Score=66.97 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
.-++++|+|.|..++.-++.+...+.. +|.+|+|+.... ++|.+. .+.. ........+.+++++.||+|+.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~t 198 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVT 198 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEE
Confidence 356899999999999999877544444 799999987653 222221 2211 1223335789999999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+++ .+.-+|..+. +|+|+.++.+|.
T Consensus 199 aT~---s~~P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 199 TTP---SREPLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ecC---CCCceeCHHH---cCCCcEEEecCC
Confidence 988 4457777664 579999999984
No 180
>PRK06046 alanine dehydrogenase; Validated
Probab=97.46 E-value=0.00055 Score=67.47 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=65.4
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
-++|||+|.|.+|+..++.++...+. +|.+|||+.... +++.+.+ ... .+.......+++++++ +|+|++|
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~----~~~--~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERM----SSV--VGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence 46899999999999999887544555 577899987542 2222211 110 1112233568899987 9999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|. +.-++..+. +|+|+.+..+|.
T Consensus 201 Tps---~~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 201 TPS---RKPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCC
Confidence 995 346777654 489999888874
No 181
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.45 E-value=0.00044 Score=65.97 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=81.4
Q ss_pred cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+++|+++.|||-+.| |+++|..| ..-++.|.++..+. .++.+..++||+
T Consensus 152 i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADI 202 (283)
T COG0190 152 IDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNADI 202 (283)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCE
Confidence 4799999999999875 89999998 57899999886532 367888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTP 319 (386)
|+.++-. .++|..+. .|+|+++|+++--.+-+ + ...-||-..+ .....-.+||
T Consensus 203 vv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~---kl~GDVdf~~-------v~~~a~~iTP 255 (283)
T COG0190 203 VVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------G---KLVGDVDFDS-------VKEKASAITP 255 (283)
T ss_pred EEEecCC----cccccccc---ccCCCEEEecCCccccC----------C---ceEeeccHHH-------HHHhhcccCC
Confidence 9999963 67777544 58999999998644322 3 3444554332 2233447899
Q ss_pred CCCCCcHHH
Q 016620 320 HIASASKWT 328 (386)
Q Consensus 320 Hia~~t~~~ 328 (386)
--||--+-+
T Consensus 256 VPGGVGPmT 264 (283)
T COG0190 256 VPGGVGPMT 264 (283)
T ss_pred CCCccCHHH
Confidence 877765533
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.44 E-value=0.00072 Score=66.65 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
..++++|||.|.+|+..++.|+..++. +|.+|+|+.... +++.+. +... .+..+....++++.+.+||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~----~~~~--~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQ----LSSL--LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHH----HHhh--cCceEEEeCCHHHHhccCCEEEE
Confidence 457899999999999999987434664 699999987542 232221 1111 11223335789999999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
|+|. ...+|..+. +|+|+.+..++.
T Consensus 201 aT~s---~~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 201 TTPS---ETPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred ecCC---CCcEecHHH---cCCCcEEEeeCC
Confidence 9985 345666654 689988877763
No 183
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00039 Score=67.52 Aligned_cols=134 Identities=13% Similarity=0.200 Sum_probs=91.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~l 244 (386)
.+|||||+|++|+-+|+.+ -..|..|+.+||..-....+ . .+....+.+++++ ++.|+|.+|+
T Consensus 53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~------------yg~~~ft~lhdlcerhpDvvLlct 116 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---K------------YGSAKFTLLHDLCERHPDVVLLCT 116 (480)
T ss_pred eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---H------------hcccccccHHHHHhcCCCEEEEEe
Confidence 4799999999999999998 57899999999875332211 1 1122456777766 6789999998
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--C---CCCCCCCCeEEcC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--K---PGLSEMKNAIVVP 319 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~--~---~~L~~~~nvilTP 319 (386)
.- ..+..++-.-=++++|.|++++++-.-.....+++.+-|-+. .|.....|+. + +.-..+|=|+.--
T Consensus 117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv 189 (480)
T KOG2380|consen 117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV 189 (480)
T ss_pred hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence 53 223334333346778999999999888888877777777544 5666666662 2 3334466555554
Q ss_pred CCC
Q 016620 320 HIA 322 (386)
Q Consensus 320 Hia 322 (386)
.++
T Consensus 190 Rig 192 (480)
T KOG2380|consen 190 RIG 192 (480)
T ss_pred ecc
Confidence 443
No 184
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.43 E-value=0.0007 Score=65.53 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=64.8
Q ss_pred cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.++.|+++.|||-+. +|+++|.+| ..-|++|+.+... ..++++.+++||+
T Consensus 163 i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADI 213 (299)
T PLN02516 163 IPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREADI 213 (299)
T ss_pred CCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence 579999999999964 699999998 5679999988642 1368899999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+.++.- .+++..+. .|+|+++||+|--.
T Consensus 214 vv~AvGk----~~~i~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 214 VIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred EEEcCCC----cCccCHHH---cCCCCEEEEeeccc
Confidence 9999964 47888766 57999999998644
No 185
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.0006 Score=65.62 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=103.3
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+.+....++ ..+++|+.+.+.. +.|++++..+ ..+++.. ++..+-. |=|- |+....+
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~ 126 (286)
T PRK14184 54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--KDVD----GFHPENM 126 (286)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--cCcc----cCCHhhH
Confidence 44566788887765544 2466766654431 4689998755 4555543 3333222 2221 2211111
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+ ..+-++ +...++.-++. ++++ .+.++.||++.|||-+ .+|+++|
T Consensus 127 g~l------~~~~~~-~~PcTp~av~~----lL~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla 174 (286)
T PRK14184 127 GRL------ALGLPG-FRPCTPAGVMT----LLER---------------------YGLSPAGKKAVVVGRSNIVGKPLA 174 (286)
T ss_pred HHH------hCCCCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 111 112222 34445543332 2221 1257999999999995 5799999
Q ss_pred HHHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH
Q 016620 182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (386)
Q Consensus 182 ~~L~~~----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~ 257 (386)
.+| .. -+++|..+..+. .++.+.+++||+|+.+++. .+++..+
T Consensus 175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG~----p~li~~~ 221 (286)
T PRK14184 175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIGR----PRFVTAD 221 (286)
T ss_pred HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHH
Confidence 998 45 688988776421 3688899999999999953 6678887
Q ss_pred HHhcCCCCcEEEEcCC
Q 016620 258 RLATMKKEAILVNCSR 273 (386)
Q Consensus 258 ~~~~mk~gailIN~aR 273 (386)
.+ |+|+++||+|-
T Consensus 222 ~v---k~GavVIDVGi 234 (286)
T PRK14184 222 MV---KPGAVVVDVGI 234 (286)
T ss_pred Hc---CCCCEEEEeee
Confidence 76 89999999974
No 186
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00054 Score=66.31 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=104.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++.+..++ ..+++|+.+.+.. ..+++++..+ ..+++.. ++.++-. |=|- |+....+
T Consensus 54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KDVD----Gl~~~n~ 126 (295)
T PRK14174 54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KDVD----GFHPENL 126 (295)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH
Confidence 44566788887766554 3466666644432 3689998755 4555553 3333322 2221 2211111
Q ss_pred hHHhhCCcEEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHH
Q 016620 103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY 180 (386)
Q Consensus 103 ~~~~~~gI~v~n~-~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~i 180 (386)
..+. .+. ...+...+|.-++ .+.++ .+.++.|+++.|||-+ .+|+++
T Consensus 127 g~l~------~~~~~~~~~PcTp~ail----~ll~~---------------------y~i~l~Gk~vvViGrS~iVG~Pl 175 (295)
T PRK14174 127 GRLV------MGHLDKCFVSCTPYGIL----ELLGR---------------------YNIETKGKHCVVVGRSNIVGKPM 175 (295)
T ss_pred HHHh------cCCCCCCcCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence 1111 111 0123344554332 22221 1257999999999995 579999
Q ss_pred HHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH
Q 016620 181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257 (386)
Q Consensus 181 A~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~ 257 (386)
|.+|.+. -+++|..+..+. .++++.+++||+|+.+++. .++|..+
T Consensus 176 a~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~ 223 (295)
T PRK14174 176 ANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITAD 223 (295)
T ss_pred HHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHH
Confidence 9987432 478887765321 3678899999999999964 2778888
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 016620 258 RLATMKKEAILVNCSRGP 275 (386)
Q Consensus 258 ~~~~mk~gailIN~aRg~ 275 (386)
.+ |+|+++||+|--.
T Consensus 224 ~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 224 MV---KPGAVVIDVGINR 238 (295)
T ss_pred Hc---CCCCEEEEeeccc
Confidence 87 8999999998544
No 187
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.007 Score=60.17 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=116.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl 242 (386)
..+|+||+|-||+.+|..+ ..-|.+|.+|+|+.... ++|.+ ..+.. .....+.+++|++ +.=--|++
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~-------~~~~~-k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLA-------ERAKG-KNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHH-------hCccC-CCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999987 47899999999988654 33332 12211 1223456777764 44455555
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (386)
.+--... ..-.-++.+..|.+|=++||-+-..--|+.--.++|.+..|...+.-|...|-=. +.-|.+ |-
T Consensus 74 MVkAG~~-VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA----~~GPSi-----Mp 143 (473)
T COG0362 74 MVKAGTP-VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA----RHGPSI-----MP 143 (473)
T ss_pred EEecCCc-HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc----ccCCCc-----CC
Confidence 5543211 1222367888999999999999999999999999999999999999999887421 122332 34
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016620 323 SASKWTREGMATLAALNVLGKIKGYPIW 350 (386)
Q Consensus 323 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 350 (386)
|.+.++++....++ +.|-+-.+|+|+-
T Consensus 144 GG~~eay~~v~pil-~~IaAk~~g~pCc 170 (473)
T COG0362 144 GGQKEAYELVAPIL-TKIAAKVDGEPCC 170 (473)
T ss_pred CCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence 67888888887765 6677767788864
No 188
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.42 E-value=0.00071 Score=67.60 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred CCeEEEEecChhHHHHHHHHHhc------CCcEEEEEcCChhhH---HHHHHhhhhhhh--hhcCCCCccccccCCHHHH
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATR---LEKFVTAYGQFL--KANGEQPVTWKRASSMDEV 233 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~------fg~~V~~~d~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~el 233 (386)
-++|+|||.|..|.++|..|+.. ||.+|..|.++..-. ..+......... ...-..+.......+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 35899999999999999998643 457888887765310 001111000000 0001122223335688899
Q ss_pred hhhCCEEEEccCCChhhhhcccHHHHh--cCCCCcEEEEcCCCccc
Q 016620 234 LREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVI 277 (386)
Q Consensus 234 l~~aDiVvl~lPlt~~t~~li~~~~~~--~mk~gailIN~aRg~~v 277 (386)
++.||+|++++|. ...+.++ .+.-. .+++++++|+++-|=-.
T Consensus 91 v~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 91 VEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCccc
Confidence 9999999999994 2223332 33323 46667889988776433
No 189
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.42 E-value=0.00085 Score=65.53 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=70.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|+|+|.|.-|.++|+.|+ .-|.+|..|.++++...+-.........-.....+.......+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 57999999999999999985 56678888887654322110000000000112233333446789999999999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vd 278 (386)
. ...+.++ ++.-..+++++.+|+++-|=-.+
T Consensus 81 s-~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 81 S-QALREVL-RQLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred h-HHHHHHH-HHHhhhccCCCeEEEEeccccCC
Confidence 5 2233332 23335668999999998875443
No 190
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.42 E-value=0.0027 Score=68.99 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=85.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell 234 (386)
++|+|||.|.||..||..++...|++|+.||++....... ... .+.... +.+... .......++ +.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKV-KRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 6799999999999999987436699999999986532111 111 111111 111100 012223556 457
Q ss_pred hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+ +....|.+.++. .-..+++.-|.
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 9999999999988888877777777889999988654443 455667777754 33567777664
No 191
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.41 E-value=0.00074 Score=66.98 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (386)
Q Consensus 177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~ 256 (386)
|..+|..|+ ..|.+|++||++.....+...+ .+...+ .....+..+++++||+|++++|....+..++ .
T Consensus 32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~----~l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWK----KVEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHH----HHHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 788999884 5789999999977531110111 011122 2234578888999999999999655467776 4
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 016620 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (386)
Q Consensus 257 ~~~~~mk~gailIN~aRg~~vde-~aL~~aL~ 287 (386)
.....+++++++||++.+..... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788999999999999876554 55556664
No 192
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.36 E-value=0.0013 Score=62.99 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=70.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVv 241 (386)
..+++++|+|.|.+|++++..|+ ..|++|++++|+.... ++..+. ....+. ....++++. +.++|+|+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~-~~g~~v~v~~R~~~~~-~~la~~----~~~~~~-----~~~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLL-KADCNVIIANRTVSKA-EELAER----FQRYGE-----IQAFSMDELPLHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHH----HhhcCc-----eEEechhhhcccCccEEE
Confidence 56789999999999999999984 6789999999886532 221111 111110 011233332 35799999
Q ss_pred EccCCCh--hhhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 242 l~lPlt~--~t~~-li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
.++|..- +... .+. ...++++.+++|+.-.+. ++ .|.+..++.
T Consensus 184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~ 229 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL 229 (270)
T ss_pred ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence 9999742 1111 222 344788999999987664 33 466666554
No 193
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.33 E-value=0.0011 Score=64.30 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=63.2
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 161 NLLKGQTVGVIGA-GRIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
.++.|++|.|||- ..+|+++|.+|.+. .++.|..+... ..++++..++
T Consensus 157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ 208 (297)
T PRK14168 157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQR 208 (297)
T ss_pred CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhh
Confidence 5799999999998 56799999988432 27889877532 1367888999
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
||+|+.++.. .+++..+. .|+|+++||+|.-.
T Consensus 209 ADIvVsAvGk----p~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 209 ADILIVAAGV----PNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CCEEEEecCC----cCccCHHH---cCCCCEEEecCCCc
Confidence 9999999964 56787766 57999999998644
No 194
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.0012 Score=63.72 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=104.1
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (386)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~-~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~ 102 (386)
+..++.|.+++....++. .+++|+.+.+. | ..|++++..+ ..+++. +++.++-. |=|- |+..+++
T Consensus 54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 126 (293)
T PRK14185 54 KACEECGFKSSLIRYESD-VTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINV 126 (293)
T ss_pred HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhH
Confidence 445667888876655443 46777764332 2 4689998754 344443 33333322 2221 2222222
Q ss_pred hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (386)
Q Consensus 103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA 181 (386)
..+. ..-++ +...+|.-++-++ ++ .+.++.||++.|||-+ .+|+++|
T Consensus 127 g~l~------~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~GK~vvViGrS~iVGkPla 174 (293)
T PRK14185 127 GRMS------IGLPC-FVSATPNGILELL----KR---------------------YHIETSGKKCVVLGRSNIVGKPMA 174 (293)
T ss_pred HHHh------CCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence 1111 11222 3455555444322 10 1247999999999995 5799999
Q ss_pred HHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620 182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (386)
Q Consensus 182 ~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~ 258 (386)
.+|.+. +++.|..+... ..++.+..++||+|+.+++. .++|..+.
T Consensus 175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 222 (293)
T PRK14185 175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM 222 (293)
T ss_pred HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 988432 37899887532 24688889999999999974 56777755
Q ss_pred HhcCCCCcEEEEcCCCc
Q 016620 259 LATMKKEAILVNCSRGP 275 (386)
Q Consensus 259 ~~~mk~gailIN~aRg~ 275 (386)
.|+|+++||+|--.
T Consensus 223 ---vk~gavVIDvGin~ 236 (293)
T PRK14185 223 ---VKEGAVVIDVGTTR 236 (293)
T ss_pred ---cCCCCEEEEecCcc
Confidence 57999999998643
No 195
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.30 E-value=0.0014 Score=64.64 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
..++++|+|.|.+|+..+..++...+ -+|.+|+|+... .+++.+. +... .+..+....++++++.+||+|++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~----~~~~--~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAAD----LRAE--LGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHH----Hhhc--cCceEEEeCCHHHHHccCCEEEE
Confidence 45789999999999998887643355 479999998754 2332221 1111 11223335789999999999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
++|.. ..++..+. +++|+.+..++
T Consensus 204 aT~s~---~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 204 TTPSE---EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred eeCCC---CcEecHHH---cCCCceEEeeC
Confidence 99853 45665544 46777666543
No 196
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.29 E-value=0.001 Score=61.35 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=61.1
Q ss_pred CeEEEEecChhHHHHHHHHHhc-CCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~-fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|||||+|.||+.+.+.+..+ .+. .+.+||++.+..... . ...+.....+++|++.+.|+|+=|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~---------~----~~~~~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL---------E----ASVGRRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH---------H----hhcCCCccccHHHHhhccceeeee
Confidence 3799999999999999987423 234 478999987653221 0 011111236899999999999988
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV 280 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~ 280 (386)
... +...-+.. +.++.|.=+|=+|-|.+.|+.
T Consensus 68 AS~--~Av~e~~~---~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 68 ASP--EAVREYVP---KILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred CCH--HHHHHHhH---HHHhcCCCEEEEechhccChH
Confidence 863 22222222 334555555556667776544
No 197
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.25 E-value=0.0015 Score=64.87 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
-++++|+|.|..++.-++.+..-+.. +|++|+|+.... +++.+. ++. .+..+....++++++++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~---~~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAG---PGLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988766545555 699999987643 233222 111 122233457899999999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|.+ +..-++..+. +|+|+.+.-+|.
T Consensus 201 T~S~-~~~Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 201 TADK-TNATILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred cCCC-CCCceecHHH---cCCCcEEEecCC
Confidence 9842 2225566654 589998777653
No 198
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.25 E-value=0.0013 Score=64.07 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=67.5
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
-+++||+|.|..|+.-++.++.-+.. +|.+|+|+.... ++|.+. ++.. .+.......+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~----~~~~--~~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAER----FSKE--FGVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988877544555 699999987653 333322 2211 122233457899999999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|. +.-++..+. +|+|+.++-+|.
T Consensus 190 T~s---~~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 190 TNS---DTPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred cCC---CCcEecHHH---cCCCceEEecCC
Confidence 984 457777664 478877777665
No 199
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.25 E-value=0.0012 Score=65.53 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hh-hhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++|+|+|.|.+|..+|..|+ ..| .|..|.++.... +..... .. ..+......+.......++++.++.+|+|+++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 57999999999999999985 456 677777655331 111100 00 00000000111122346788889999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+|. ..++..+ ++.-..+++++.+|++.-|=
T Consensus 85 vps-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 85 VPS-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred eCH-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 994 3344433 34445577888888887764
No 200
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.25 E-value=0.00088 Score=68.12 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=64.6
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|+++.|||.|.+|+.+++.| ...|+ ++++++|+.... ..+...+ +. .......++.+.+.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~-------~~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAF-------RN--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHh-------cC--CeEecHHHHHHHhccCCEE
Confidence 47899999999999999999998 46775 799999986532 2222211 10 1122235667889999999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+.|++. ...+|..+... .+.-++||.+=
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence 999984 34556655543 23346677654
No 201
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.24 E-value=0.0016 Score=59.77 Aligned_cols=107 Identities=16% Similarity=0.245 Sum_probs=69.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK- 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~- 225 (386)
..|..++|+|+|.|.+|..+|+.|+ ..|. +++.+|+. ......+ + .+...+.+++... .....
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp-~~~i~~ 94 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP-YTEIEA 94 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC-CCEEEE
Confidence 4588899999999999999999985 5687 69999877 2111000 0 0000011111110 01111
Q ss_pred -----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 226 -----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
...+++++++++|+|+-| ..+.+++.++..+....++...++..
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 113456678899999999 57788999998988888887766664
No 202
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.22 E-value=0.00043 Score=63.77 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=91.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc---C--CCCc-----------ccc
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN---G--EQPV-----------TWK 225 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~~~-----------~~~ 225 (386)
...-+.|+|+|.|.||..||+.. ..-|.+|+.+|++.....+.. ....+++.+- + ..+. +..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 34456799999999999999985 578999999999876433221 1111222111 1 1111 011
Q ss_pred ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (386)
Q Consensus 226 ~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~ 304 (386)
...+++++++.+|+|+-+.--+-+.+.-+-++.=..+|+.++| .|+|+ +...++..++++. -..++|..|.+-|.
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvPv 161 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVPV 161 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCchh
Confidence 2456667778888887666533333322223333446777766 56666 3456788888754 57888998876663
Q ss_pred CCCCCCCCCCeEEcCCCCC
Q 016620 305 MKPGLSEMKNAIVVPHIAS 323 (386)
Q Consensus 305 ~~~~L~~~~nvilTPHia~ 323 (386)
.++-.||=|+..+-
T Consensus 162 -----MKLvEVir~~~TS~ 175 (298)
T KOG2304|consen 162 -----MKLVEVIRTDDTSD 175 (298)
T ss_pred -----HHHhhhhcCCCCCH
Confidence 44445566665543
No 203
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.22 E-value=0.002 Score=63.29 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=62.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-C-CCCccccccCCHHHHh-hhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-G-EQPVTWKRASSMDEVL-READVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~ell-~~aDiVvl 242 (386)
++|+|||.|.+|..+|..|+ ..|.+|..|+|+.... +.... .....+.. + ..+.......++++.+ ..+|+|++
T Consensus 1 MkI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~~-~~i~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALS-SKKISVNLWGRNHTTF-ESINT-KRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHHH-HHHHH-cCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence 36999999999999999984 6689999999876421 11100 00000000 0 0111112235677766 58999999
Q ss_pred ccCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016620 243 HPVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~ 275 (386)
++|. .++...+ ++... .+++++.+|...-|=
T Consensus 78 avks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 AVPT-QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EeCH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 9995 2344443 33333 566777777666664
No 204
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.19 E-value=0.0025 Score=64.16 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhhCCEEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiVv 241 (386)
-++++|+|.|..++.-++.++.-+. -+|.+|+|+.... ++|.+.+ .... .+. .+..+.+.++++++||+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~-~~~~~v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETY-PQITNVEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence 4689999999999999988754453 3899999987643 2333221 1110 011 1334578999999999999
Q ss_pred EccCCCh---hhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 242 l~lPlt~---~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
.|++.+. .+.-++..+. +|+|+.++.++.-+
T Consensus 229 taT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 229 YCNSGETGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred EccCCCCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 9998543 3446776654 57999888776644
No 205
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.18 E-value=0.0023 Score=60.89 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=64.5
Q ss_pred CeEEEEecChhHHHHHHHHHhc--CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVv 241 (386)
.+|||||+|.||+.+++.+.++ .++++. +|++.... .+.+. +. .....+++++ ....|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence 5899999999999999987432 235544 46665422 11110 00 2235689997 58899999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQN 289 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd---e~aL~~aL~~g 289 (386)
=|... +...-..... ++.|.-++=.|-|.+.| ++.|.++.+++
T Consensus 68 E~A~~--~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 68 EAAGQ--QAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred ECCCH--HHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 99874 2222223333 45677777777788877 45555555553
No 206
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0022 Score=63.15 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=70.4
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
-++++|||.|..+..-.+.++.-|+. +|.+|+|++... +++. +.++..+.. ......+.+++++.||+|+.|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence 35799999999999999887666776 699999987653 2222 122222221 233467899999999999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|.+. -++..+. ++||+.+..+|.
T Consensus 203 T~s~~---Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 203 TPSTE---PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred cCCCC---CeecHhh---cCCCcEEEecCC
Confidence 99654 7777766 469999999984
No 207
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0071 Score=60.24 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=93.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH-----HHhh--hhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-----FVTA--YGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
.+|||+|+|-||-++|-.++ .-|.+|+++|.+...-..- +..+ ..+.+++....+ ......+.++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g-~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG-KLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC-CceEecChhh-cccCC
Confidence 78999999999999999885 6799999999876542110 0000 000000000000 0111234444 56999
Q ss_pred EEEEccCCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE--Eeecc---CCCCC
Q 016620 239 VISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV--GLDVF---EDEPY 304 (386)
Q Consensus 239 iVvl~lPlt~~t~-------~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga--alDV~---~~EP~ 304 (386)
++++|+|. |-+. .+.+ +..-..||+|.++|==|.-.+=-++.++.-|.+.. .|. .-|.+ .+|-.
T Consensus 87 v~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~-sgL~~~~Df~laysPERv 164 (436)
T COG0677 87 VFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEER-SGLKFGEDFYLAYSPERV 164 (436)
T ss_pred EEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhc-CCCcccceeeEeeCcccc
Confidence 99999883 4222 1222 23556789999998888877777788888776641 122 23544 44533
Q ss_pred -CCC---CCCCCCCeEEcCCCCCCcHHHHHHH
Q 016620 305 -MKP---GLSEMKNAIVVPHIASASKWTREGM 332 (386)
Q Consensus 305 -~~~---~L~~~~nvilTPHia~~t~~~~~~~ 332 (386)
|-. .+.+.|+| +||.|+.+.+.+
T Consensus 165 ~PG~~~~el~~~~kV-----IgG~tp~~~e~a 191 (436)
T COG0677 165 LPGNVLKELVNNPKV-----IGGVTPKCAELA 191 (436)
T ss_pred CCCchhhhhhcCCce-----eecCCHHHHHHH
Confidence 222 45667777 577776654444
No 208
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.15 E-value=0.0012 Score=60.77 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=61.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi 239 (386)
-++.|++|.|||.|.+|..-++.| ..+|++|.++++...+...... ..+ ...+.. ... .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~--------~~~--~i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLA--------EQG--GITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------HcC--CEEEEeCCCC-HHHhCCcEE
Confidence 358999999999999999999988 5799999999987665443321 111 111211 112 345788999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
|+.+....+- |......++...++||+
T Consensus 73 Vi~at~d~~l-----n~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 73 VIAATDDEEL-----NRRVAHAARARGVPVNV 99 (205)
T ss_pred EEECCCCHHH-----HHHHHHHHHHcCCEEEE
Confidence 8888764322 34444545555577775
No 209
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.14 E-value=0.0048 Score=57.70 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=71.2
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC----------hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (386)
.++.|++|.|.|+|++|+.+|+.| ..+|++|++...+ ...++..+...... +. .... . ...+.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~-l~--~~~~--~-~~~~~ 99 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGS-VL--GFPG--A-ERITN 99 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCC-cc--cCCC--c-eecCC
Confidence 468999999999999999999998 5899999955332 11122111111000 00 0000 0 01122
Q ss_pred HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
+++ -..||+++-|.+ .+.|+.+...+++ -.+++-.+-+++- ..-.+.|+++.+.
T Consensus 100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 222 247899998886 5567788888786 4477777777773 4455777766544
No 210
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.14 E-value=0.00071 Score=55.19 Aligned_cols=89 Identities=22% Similarity=0.212 Sum_probs=57.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.++|++|.|||.|.+|..=++.| ...|++|+++++.. ...++ . ..+. ...+++-+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence 58999999999999999999998 68999999999875 11111 0 1111 123445688899999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
.+++. ++ +++.....++.--+++|++-
T Consensus 66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATDD-PE----LNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred ecCCC-HH----HHHHHHHHHhhCCEEEEECC
Confidence 88874 22 34555555565557888753
No 211
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.10 E-value=0.0014 Score=66.02 Aligned_cols=99 Identities=23% Similarity=0.253 Sum_probs=66.3
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
+|.++++.|||+|.||.-+|+.| ...| .+|++.+|+.....+ .. +..+ ..+....++.+.+.++|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~~-La-------~~~~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAEE-LA-------KKLG---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHH-HH-------HHhC---CeeecHHHHHHhhhhCCEE
Confidence 48999999999999999999998 4677 579999998765321 11 1112 2233456777889999999
Q ss_pred EEccCCChhhhhcccHHHHhcC---CCCcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~m---k~gailIN~aRg~ 275 (386)
+.++. ....+|..+.+... ++.-++||.+=..
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 99975 33555555444332 1124677765543
No 212
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.09 E-value=0.0019 Score=63.07 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCcc-ccccCCHHHHhhhCCEEEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVT-WKRASSMDEVLREADVISL 242 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~ell~~aDiVvl 242 (386)
.++|+|||.|.||..+|.+|+ ..|.+|.++.|......... +-.+.. .+..... .....+.+ ....+|+|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~-~~g~~V~~~~r~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLA-RAGFDVHFLLRSDYEAVREN----GLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHHHhC----CeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence 368999999999999999984 67899999988653321110 000000 0100000 01112333 4678999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaa 295 (386)
|++.. ++...+ +..-..+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus 79 avK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 79 GLKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred EecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 99854 333322 3344456778888877665 44567777777655655553
No 213
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.09 E-value=0.0027 Score=61.95 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=71.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+...... ..........+.++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~--~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPVG--GFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhcc--CCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 47999999999999999874 4443 89999986543221212222111110 11112222357777 78999999998
Q ss_pred CCChh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 016620 245 VLDKT-----------TYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (386)
Q Consensus 245 Plt~~-----------t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~gaa--lD 297 (386)
+.... +..++.. +.+....+.+++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 73211 1122211 22333457889999876433333344444 3334455654 56
No 214
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.08 E-value=0.0058 Score=59.09 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=52.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.+++|.|+|.|.+|++++..| ...|+ +|+++||+.... +...+. +.... .........++.+.+.++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~----l~~~~-~~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADE----LNARF-PAARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHH----HHhhC-CCeEEEeccchHhhhCCCCEE
Confidence 36788999999999999999998 46787 799999986542 222111 11110 001112234556677889999
Q ss_pred EEccCCC
Q 016620 241 SLHPVLD 247 (386)
Q Consensus 241 vl~lPlt 247 (386)
+.++|..
T Consensus 197 InaTp~G 203 (284)
T PRK12549 197 VHATPTG 203 (284)
T ss_pred EECCcCC
Confidence 9999863
No 215
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.06 E-value=0.0052 Score=57.08 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=68.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (386)
.++.|++|.|.|+|++|+.+|+.| ...|++|++ .|.+. ....+. ... ..+..........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~------~~~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVA------LGGSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHh------hCCccccCcccccCc
Confidence 468999999999999999999998 578887665 45443 022111 110 001110000001111
Q ss_pred HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
+++ -..||+++-|.+ .+.|+.+....++ -.+++-.+-+++-+ .-.+.|++..
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~G 143 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERG 143 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCC
Confidence 222 247999999987 3477888877776 44777778888755 3355666554
No 216
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.05 E-value=0.004 Score=61.21 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=71.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+..++|+|||.|.+|..+|..++ ..| .++..+|.+.........+.... ....+ .........+.+ .+++||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~-~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHF-STLVG-SNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhh-ccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence 45679999999999999998764 445 68999998764321111111100 00001 111222235666 679999999
Q ss_pred Ecc--CCChh-hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 016620 242 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (386)
Q Consensus 242 l~l--Plt~~-t~--------~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~gaa--lD 297 (386)
++. |..+. ++ .++. .+.+....|.+++|+++-..=+-...+.+... ..++.|.+ +|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 44331 11 1110 12333345788888886533333333433321 24455555 55
No 217
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.05 E-value=0.0057 Score=60.01 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=57.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
.+|||+|+|.||+.+++.+.+.-++++.+ +|++....... ........+.++++.+.|+|++|+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874444788775 68874222110 011222356777888999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
|.... -+.....++.|.=+|+..
T Consensus 69 Ps~th-----~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 69 GSATD-----IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred CCccC-----HHHHHHHHHcCCCEEECC
Confidence 96332 133444566676677664
No 218
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.04 E-value=0.002 Score=63.51 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=59.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|++|.|||.|.||+.+|+.| ...|. +|++.+|+... ..+.+ .....-+...++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~--~~~~~-----------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLT--LPYRT-----------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCccc--cchhh-----------------hhhhhhhcccCCCEE
Confidence 48999999999999999999998 56774 69999998642 11000 000111345789999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
+.|..-|.....++..+.+...++ -+|||.+=..
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence 987432333345555555554332 2777765443
No 219
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.02 E-value=0.0027 Score=58.29 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=51.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
-++.|++|.|||.|.+|...++.| ...|++|+++++.....+.+... .+ ...+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence 469999999999999999999987 57899999999875443332211 11 11111111113457889999
Q ss_pred EEccCCCh
Q 016620 241 SLHPVLDK 248 (386)
Q Consensus 241 vl~lPlt~ 248 (386)
+.++....
T Consensus 75 iaaT~d~e 82 (202)
T PRK06718 75 IAATNDPR 82 (202)
T ss_pred EEcCCCHH
Confidence 99887543
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.98 E-value=0.0017 Score=54.47 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=53.3
Q ss_pred eEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 167 ~vgIvG-~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
+|+||| .|.+|+.+.++|++...+++.. ++++.... ..+...++ ...+........ .+. +.+.++|+|++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence 699999 9999999999997767777554 44443110 00101110 000111111111 233 4459999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
|... +..+ .... .++|..+|+.|.
T Consensus 75 ~~~~-~~~~-~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 75 PHGA-SKEL-APKL---LKAGIKVIDLSG 98 (121)
T ss_dssp CHHH-HHHH-HHHH---HHTTSEEEESSS
T ss_pred chhH-HHHH-HHHH---hhCCcEEEeCCH
Confidence 9422 2222 1222 478889999875
No 221
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.92 E-value=0.0056 Score=59.27 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=49.6
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh--hHHHHHHhhhhhhhhhcCCC-Cc---cccccCCHHHHh
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQ-PV---TWKRASSMDEVL 234 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~ell 234 (386)
.+.|+++.|+|.|.+|++++..|+ ..|++ |++++|+.. .+.++..+. +...... .. ......++++.+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La-~~G~~~V~I~~R~~~~~~~a~~l~~~----l~~~~~~~~~~~~d~~~~~~~~~~~ 197 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCA-LDGAKEITIFNIKDDFYERAEQTAEK----IKQEVPECIVNVYDLNDTEKLKAEI 197 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCchHHHHHHHHHHH----HhhcCCCceeEEechhhhhHHHhhh
Confidence 468899999999999999999874 78886 999999752 222221111 1111100 00 011112344556
Q ss_pred hhCCEEEEccCC
Q 016620 235 READVISLHPVL 246 (386)
Q Consensus 235 ~~aDiVvl~lPl 246 (386)
..+|+|+.++|.
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 778999999985
No 222
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.83 E-value=0.0028 Score=60.39 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=94.9
Q ss_pred EEEEec-ChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 168 vgIvG~-G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
|+|||. |.+|..+|..|+ ..| -++..||.+.........+ ... ..... .........++++.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~~~~d-l~~-~~~~~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKGVAMD-LQD-AVEPL-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchHHHHH-HHH-hhhhc-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 6899999876432111111 000 00111 12233345677899999999999
Q ss_pred ccCC--Ch---------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE-eeccCCCCCC-
Q 016620 243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVFEDEPYM- 305 (386)
Q Consensus 243 ~lPl--t~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~gaa-lDV~~~EP~~- 305 (386)
+.-. .+ .+..++. .+.+.+..+.++++|++-.-=+-...+.+. +...++.|.+ +|...-.-..
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la 156 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA 156 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHH
Confidence 6521 10 1111221 123333458899999963222333344444 3456788888 8764311100
Q ss_pred ---CCCCCCCC-CeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620 306 ---KPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (386)
Q Consensus 306 ---~~~L~~~~-nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~ 354 (386)
.-+--+.. .|+=.-|-+....+...+++..+.+-++.++.++.....+|
T Consensus 157 ~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~~a~~~~~ii~ai~~~~~~~~~v~ 209 (263)
T cd00650 157 EKLGVDPDDVKVYILGEHGGSQVPDWSTVRIATSIADLIRSLLNDEGEILPVG 209 (263)
T ss_pred HHhCCCccceEEEEEEcCCCceEeccccchHHHHHHHHHHHHHcCCCEEEEEE
Confidence 00000000 01111111111122122277778888888888877555554
No 223
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.76 E-value=0.0049 Score=63.92 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=50.9
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
+..+.|++++|+|.|.+|++++..| ...|++|++++|+.... +...+. .+. ......++.+ +.++|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~-------~~~---~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASR-------CQG---KAFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHH-------hcc---ceechhHhcc-cCCCCE
Confidence 3567899999999999999999998 57899999999876432 111111 000 0111122222 568999
Q ss_pred EEEccCCC
Q 016620 240 ISLHPVLD 247 (386)
Q Consensus 240 Vvl~lPlt 247 (386)
|++|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99999964
No 224
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.76 E-value=0.0062 Score=58.24 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
.+|||+|+|.||+.+++.+.+.-++++. ++++........ . ..+ .+.....+++++-.+.|+|+.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--~-------~~~---~~~~~~~d~~~l~~~~DvVve~t 69 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--R-------ALG---EAVRVVSSVDALPQRPDLVVECA 69 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--h-------hhc---cCCeeeCCHHHhccCCCEEEECC
Confidence 4799999999999999987433255543 333322211100 0 000 01223467888755689999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM 291 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~i 291 (386)
|... .. +-....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 70 ~~~~--~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 70 GHAA--LK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred CHHH--HH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 8532 21 222223444544444444544443 456666666543
No 225
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.75 E-value=0.029 Score=55.02 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhh------H---HHHHHhhhhhhhhhcCCCC--------ccccccC--CHHHHhhh
Q 016620 176 IGSAYARMMVEGFKMNLIYYDLYQAT------R---LEKFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE 236 (386)
Q Consensus 176 IG~~iA~~L~~~fg~~V~~~d~~~~~------~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~ 236 (386)
||..||..++ ..|.+|..||++... . ..+.....-+.+...+... ....... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 6899999875 679999999998732 0 1111111001111111110 0111122 36688899
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~ 300 (386)
||+|+-++|-+.+.+.-+-.+..+.++++++|...+ +.+....|.+.++. .=...++..|.
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~ 140 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLN 140 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCC
Confidence 999999999999988888888888999999985443 34556677776643 22455565554
No 226
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.71 E-value=0.0078 Score=49.66 Aligned_cols=107 Identities=24% Similarity=0.317 Sum_probs=62.6
Q ss_pred eEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl 242 (386)
+|||||+|.+|+...+.+.+. -+.++. ++|+++... +.+.+. .+ ...+.+++++++ +.|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~-------~~-----~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEK-------YG-----IPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHH-------TT-----SEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHH-------hc-----ccchhHHHHHHHhhcCCEEEE
Confidence 699999999999998776433 466765 678876542 222111 11 224678999998 7899999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~-aRg~~vde~aL~~aL~~g~ 290 (386)
+.|... ..-+-...+++=+ .+++.- ---.+-+.+.|.++.++.+
T Consensus 69 ~tp~~~--h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPPSS--HAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSGGG--HHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ecCCcc--hHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 999522 2222233332211 355542 1113345555565555443
No 227
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.69 E-value=0.011 Score=49.87 Aligned_cols=111 Identities=25% Similarity=0.311 Sum_probs=60.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|+|+|+ |+||+.+++.+...-++++. ++++.......+ - ...-.+..+.+.....++++++.++|+|+-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d---~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---D---VGELAGIGPLGVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---B---CHHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---h---hhhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence 37999999 99999999987544788854 556655211000 0 0001122233344568999999999999877
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
. +|+...-.-+..+ +.|.-+|-...|---++.+.++.+.
T Consensus 75 T--~p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 75 T--NPDAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp S---HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred C--ChHHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHh
Confidence 6 3443322222232 3466666666666433434444443
No 228
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.64 E-value=0.012 Score=60.31 Aligned_cols=120 Identities=11% Similarity=0.088 Sum_probs=71.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cC----------ChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (386)
.++.|++|.|.|+|++|+.+|+.| ..+|++|++. |. ... .+.++.+.....+...... .+. ...+
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~~~~~~-~~~-~~i~ 303 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRISEYAEE-FGA-EYLE 303 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchhhhhhh-cCC-eecC
Confidence 468999999999999999999998 6899999988 51 221 1111111000001000000 000 1123
Q ss_pred HHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 230 MDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 230 l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
.++++ ..|||++-|.. .+.|+.+....++ +-.+++-.+-|++ +.+-.+.|.++.|
T Consensus 304 ~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI 361 (445)
T PRK09414 304 GGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGV 361 (445)
T ss_pred CccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCc
Confidence 34443 37999998875 5667777666663 2348888888888 3334566766644
No 229
>PLN02477 glutamate dehydrogenase
Probab=96.59 E-value=0.018 Score=58.38 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=72.2
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (386)
.++.|++|.|.|+|++|+.+|+.| ...|++|++. |.+. ...+.++..... .+. +. + +.. ..+.
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g-~l~--~~-~-~a~-~i~~ 274 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGG-GLK--GF-P-GGD-PIDP 274 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC-chh--cc-c-cce-EecC
Confidence 479999999999999999999998 5789999944 5430 111111111000 000 00 0 011 1122
Q ss_pred HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
+++ ...||+++-|.- .+.|+++...+++ -.+++-.+-+++ . .+-.+.|++..|.
T Consensus 275 ~e~l~~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~ 329 (410)
T PLN02477 275 DDILVEPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVV 329 (410)
T ss_pred ccceeccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcE
Confidence 232 357999887753 5678888888875 458888899998 3 3345777776543
No 230
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.59 E-value=0.012 Score=57.84 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhhCCEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV 240 (386)
.+++|+|||.|.+|..+|-.|+ ..|. ++..+|.+.......-.+.. +.... ..... ...+. +.+++||+|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~~~~~~g~~~Dl~----~~~~~~~~~~i-~~~~~-~~~~~adiv 77 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDINKEKAEGDAMDLS----HAVPFTSPTKI-YAGDY-SDCKDADLV 77 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCCchhHHHHHHHH----hhccccCCeEE-EeCCH-HHhCCCCEE
Confidence 5679999999999999998874 4555 89999986543222222211 01111 11111 22344 457999999
Q ss_pred EEccC
Q 016620 241 SLHPV 245 (386)
Q Consensus 241 vl~lP 245 (386)
+++.-
T Consensus 78 Iitag 82 (315)
T PRK00066 78 VITAG 82 (315)
T ss_pred EEecC
Confidence 98754
No 231
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.58 E-value=0.012 Score=53.79 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=59.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++++|||- |.+|+.+++.+ +..|..|+ +++||+|++|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilav 39 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSV 39 (197)
T ss_pred CEEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeC
Confidence 37999988 99999999998 67888774 24799999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--C---CCCCCCCeEEcC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--P---GLSEMKNAIVVP 319 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~--~---~L~~~~nvilTP 319 (386)
|.. .+..++ ..+. .+++|++.-+- .+.++ ..++....|+.- . .|+ .++++++
T Consensus 40 Pv~-~~~~~i-----~~~~--~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~~a~~~lf--~~~iv~~ 96 (197)
T PRK06444 40 PID-AALNYI-----ESYD--NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPMSYNDGVH--RTVIFIN 96 (197)
T ss_pred CHH-HHHHHH-----HHhC--CeEEeccccCH----HHHHh---------cCCEEecCCCCCCCcCccccc--ceEEEEC
Confidence 963 333333 2232 37899988553 12221 235666777732 1 243 4777664
Q ss_pred C
Q 016620 320 H 320 (386)
Q Consensus 320 H 320 (386)
.
T Consensus 97 ~ 97 (197)
T PRK06444 97 D 97 (197)
T ss_pred C
Confidence 3
No 232
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.52 E-value=0.013 Score=55.71 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=45.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|+|+|+ |.||+.+++.+.+.-++++.+ +|+....... . ...+.....+++++++.+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence 47999998 999999999874334688665 6765532110 0 111122357899999899999988
Q ss_pred cC
Q 016620 244 PV 245 (386)
Q Consensus 244 lP 245 (386)
+|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 233
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.51 E-value=0.012 Score=57.98 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=33.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~ 202 (386)
.|++|+|+|+|..|....+. ++++|++|+++|++.++.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKL 203 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHH
Confidence 58999999999999888887 589999999999987653
No 234
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.06 Score=52.95 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=115.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl 242 (386)
..+|++|++-||+.++-.+ ..-|..|.+|+|+.+..+ ++.+. ++. ......+.|+++++ +.--.|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan------eak--~~~i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN------EAK--GTKIIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH------hhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence 4689999999999999886 478999999999886533 23221 111 22233456888875 44556666
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia 322 (386)
.+-.... ...+-++....|.+|-++|+-+-..--|+.-=.+.|....|...+.-|...|--.. --|. + +-
T Consensus 77 lvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR----~GPS--l---Mp 146 (487)
T KOG2653|consen 77 LVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR----YGPS--L---MP 146 (487)
T ss_pred EeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc----cCCc--c---CC
Confidence 5543322 34444778889999999999999999999999999999989999999998874321 1121 1 23
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016620 323 SASKWTREGMATLAALNVLGKIKGYPIW 350 (386)
Q Consensus 323 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 350 (386)
|.+.+++.++..++..-....-+|+|+-
T Consensus 147 Gg~~~Awp~ik~ifq~iaakv~~~epCc 174 (487)
T KOG2653|consen 147 GGSKEAWPHIKDIFQKIAAKVSDGEPCC 174 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 6677888888777655444444778754
No 235
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.51 E-value=0.01 Score=59.64 Aligned_cols=111 Identities=18% Similarity=0.087 Sum_probs=68.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|.|||.|.||+.+|..|+ .-| .+|++.||+.....+. .+...+ +.............+.+++++.|+|+.|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGG---KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccc---cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 57999999999999999986 445 8999999997653321 110000 00011111222346789999999999999
Q ss_pred CCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 245 Plt~~t~~li~~~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
|..- + ...+ +.++.|.-.++++-.+--- -++-+..++
T Consensus 77 p~~~---~---~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 77 PPFV---D---LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred Cchh---h---HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence 9532 2 2333 3457777788877655432 334444433
No 236
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.49 E-value=0.44 Score=47.17 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=63.5
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|.+|+++|=+ ++..+.+..+ ..||++|.+..|..-...+...+...+..+..+ ..+....++++.+++||+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF 228 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999986 5788888876 579999999987532111111100000011111 223345899999999999
Q ss_pred EEEcc----CCCh---hh------hhcccHHHHhcC-CCCcEEEEc
Q 016620 240 ISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC 271 (386)
Q Consensus 240 Vvl~l----Plt~---~t------~~li~~~~~~~m-k~gailIN~ 271 (386)
|..-. .... +. ...++++.++.+ |++++|.-+
T Consensus 229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~ 274 (334)
T PRK01713 229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC 274 (334)
T ss_pred EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence 98743 1100 11 123667777765 677777654
No 237
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.49 E-value=0.019 Score=55.81 Aligned_cols=75 Identities=15% Similarity=0.351 Sum_probs=45.2
Q ss_pred CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
++|+|||.|.+|..+|..++. +++ +|+.+|+..........+.... ..... .........+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 589999999999999998753 234 9999998654322211111111 00001 111222234554 479999999986
No 238
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.49 E-value=0.0092 Score=49.82 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=53.5
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl 242 (386)
++||+|. |.+|+.+++.|.+.-+.++.+. +++.... ......++ ..... ......+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence 5899995 9999999998743336777666 4332110 00000000 00000 000112332 258999999
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
|+|... +...+. .....+++|.++|+++.
T Consensus 72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred cCCcHH-HHHHHH-HHHhhhcCCCEEEECCc
Confidence 999643 333322 23456799999999974
No 239
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.46 E-value=0.027 Score=53.47 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=72.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcC--------Chh--hHHHHHHh---hhhhhhhhcC-CCCccccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--------YQA--TRLEKFVT---AYGQFLKANG-EQPVTWKR 226 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~--------~~~--~~~~~~~~---~~~~~~~~~~-~~~~~~~~ 226 (386)
.++.|+||.|.|+|++|+.+|+.| ...|++|++... ..- +.+....+ ...+.+.... ..+ ...
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~- 110 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAK- 110 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCE-
Confidence 579999999999999999999998 689999995432 100 01100000 0000000000 000 011
Q ss_pred cCCHHHH-hhhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 227 ~~~l~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
..+.+++ -..|||++-|. +.+.|+++...+++ +-.+++-.+-|++-. +-.+.|.++.+
T Consensus 111 ~~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI 171 (254)
T cd05313 111 YFEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV 171 (254)
T ss_pred EeCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 1122333 35799998775 47889998888884 345888888888755 34466766644
No 240
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.45 E-value=0.59 Score=45.66 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=49.7
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+.|.+|+++|= +++.++.+..+ ..||++|.+..|..-...+.+.+...+.....+ ..+....++++.+++||+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 78999999997 67888888876 589999999987543211111110000001111 12334579999999999998
Q ss_pred Ec
Q 016620 242 LH 243 (386)
Q Consensus 242 l~ 243 (386)
.-
T Consensus 222 ~~ 223 (304)
T TIGR00658 222 TD 223 (304)
T ss_pred Ec
Confidence 74
No 241
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.44 E-value=0.011 Score=52.09 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=49.2
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCC
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREAD 238 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aD 238 (386)
.-.++|++|.|||-|.+|...++.| ...|++|.++++........ .. ...+.. ..+ ++-+.++|
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~l~~-----------l~--~i~~~~-~~~~~~dl~~a~ 72 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKEMKE-----------LP--YITWKQ-KTFSNDDIKDAH 72 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHHHHh-----------cc--CcEEEe-cccChhcCCCce
Confidence 3579999999999999999999988 57999999998765432221 00 011111 111 23367899
Q ss_pred EEEEccCC
Q 016620 239 VISLHPVL 246 (386)
Q Consensus 239 iVvl~lPl 246 (386)
+|+.++..
T Consensus 73 lViaaT~d 80 (157)
T PRK06719 73 LIYAATNQ 80 (157)
T ss_pred EEEECCCC
Confidence 99988864
No 242
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.43 E-value=0.014 Score=57.35 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=48.2
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+..++|+|||.|.+|..+|..++ ..| ++|+.+|.+.........+..... . ............+. +.+++||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~~-~-~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHSN-V-IAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhhh-h-ccCCCeEEEECCCH-HHhCCCCEEE
Confidence 45579999999999999998764 445 489999987764221122211110 0 00111123323566 4679999999
Q ss_pred Ecc
Q 016620 242 LHP 244 (386)
Q Consensus 242 l~l 244 (386)
++.
T Consensus 80 ~ta 82 (321)
T PTZ00082 80 VTA 82 (321)
T ss_pred ECC
Confidence 976
No 243
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.38 E-value=0.012 Score=53.95 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=59.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--HH-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RL-EKF-----------VTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~--~~-~~~-----------~~~~~~~~~~~~~~~~~~~ 225 (386)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-+ .+ .++ .+...+.+++... .....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~v~i~ 94 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS-DIQVT 94 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC-CCEEE
Confidence 4689999999999999999999985 6777 79999876311 00 000 0000011111100 00000
Q ss_pred ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
. ..++++.++++|+|+.|+. +.+++.++++...+.
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL 135 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 1235677899999988875 466777777655543
No 244
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.35 E-value=0.64 Score=46.11 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=49.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|.+|+++|= .++..+++..+ ..+|++|.++.|..-...+.+.+. ++. ....+..+....+++|.++++|+
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~----~~~~~~~~g~~~~~~~d~~eav~~aDv 225 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAI----AEENCEVSGGSVLVTDDVDEAVKDADF 225 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHH----HHHHHHhcCCeEEEEcCHHHHhCCCCE
Confidence 589999999997 57778888876 579999999987532111111110 000 00011123345799999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|..-.
T Consensus 226 vy~~~ 230 (338)
T PRK02255 226 VYTDV 230 (338)
T ss_pred EEEcc
Confidence 98833
No 245
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.34 E-value=0.009 Score=57.96 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.|+.+||+|+|.+|.--.+. +++||++|+++|+..++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchh
Confidence 89999999999988766676 68999999999987644
No 246
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.33 E-value=0.09 Score=50.55 Aligned_cols=192 Identities=21% Similarity=0.207 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------E
Q 016620 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N 191 (386)
Q Consensus 123 vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f----g~-------~ 191 (386)
+|=.+++-+|+..|- .|+.|...+|.|+|.|.-|-.+|+.|. .. |. +
T Consensus 4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~ 61 (279)
T cd05312 4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK 61 (279)
T ss_pred HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence 455677778887772 235789999999999999999999874 33 65 8
Q ss_pred EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCC-
Q 016620 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (386)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk- 263 (386)
++.+|+..- ..+..+...|. +. ... ....+|.|+++ +.|+++-+-- .-++|+++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~a---~~-~~~----~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~ 129 (279)
T cd05312 62 IWLVDSKGLLTKDRKDLTPFKKPFA---RK-DEE----KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAK 129 (279)
T ss_pred EEEEcCCCeEeCCCCcchHHHHHHH---hh-cCc----ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHh
Confidence 999987621 11222222221 11 100 12368999999 8899887542 24799999999998
Q ss_pred --CCcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCc-----HHHHHHH
Q 016620 264 --KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASAS-----KWTREGM 332 (386)
Q Consensus 264 --~gailIN~aRg~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t-----~~~~~~~ 332 (386)
+..++.=.|....--|..=.++.+ +|+ |.+.+.-.-..+.-- ....-+..|+++-|-++-.. ....+.|
T Consensus 130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m 209 (279)
T cd05312 130 SNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEM 209 (279)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHH
Confidence 889999988876533333333333 354 333332111111000 01234677999999886522 1223566
Q ss_pred HHHHHHHHHHHHcCCC
Q 016620 333 ATLAALNVLGKIKGYP 348 (386)
Q Consensus 333 ~~~~~~ni~~~~~g~~ 348 (386)
...+++-|-.+..-+.
T Consensus 210 ~~aAA~aLA~~~~~~~ 225 (279)
T cd05312 210 FLAAAEALASLVTDEE 225 (279)
T ss_pred HHHHHHHHHHhCCccc
Confidence 6666777777655443
No 247
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.32 E-value=0.61 Score=46.11 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=51.2
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|.+|+++|-+ ++..+++..+ ..||++|.+..|..-...+.+.+...+..+..+ .......++++++++||+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV 227 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 3789999999987 7888888876 589999999987543211111111000011112 123345789999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|..-.
T Consensus 228 vyt~~ 232 (331)
T PRK02102 228 IYTDV 232 (331)
T ss_pred EEEcC
Confidence 98854
No 248
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.31 E-value=0.0076 Score=52.06 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=47.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|+|||. |.+|+.+|-.|.. +++-++..+|+........-.+..+. . ..............+.+++||+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~--~--~~~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHA--S--APLPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHH--H--HGSTEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhh--h--hhcccccccccccccccccccEEEEe
Confidence 47999999 9999999987643 67778999999865322222221100 0 01111111223556778999999999
Q ss_pred cC
Q 016620 244 PV 245 (386)
Q Consensus 244 lP 245 (386)
.-
T Consensus 77 ag 78 (141)
T PF00056_consen 77 AG 78 (141)
T ss_dssp TS
T ss_pred cc
Confidence 73
No 249
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.31 E-value=0.047 Score=48.09 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCCeEEEEe--cChhHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 164 ~g~~vgIvG--~G~IG~~iA~~L~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.|++|+++| .+++..+++..+ ..||+++.+..|..- +....+.+...+.....+ .......+++|.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 488999999 389999999987 589999999988762 222222211111111111 112334799999999999
Q ss_pred EEEccCC----Chhh-------hhcccHHHHhcCCCCcEEEEc
Q 016620 240 ISLHPVL----DKTT-------YHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 240 Vvl~lPl----t~~t-------~~li~~~~~~~mk~gailIN~ 271 (386)
|..-.-. .+.. ...++.+.++.+|++++|.-+
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~ 119 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP 119 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC
Confidence 9777654 1111 145788888888888888776
No 250
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.28 E-value=0.0098 Score=54.92 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=67.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 239 (386)
-++.|++|.|||-|..|..=++.| ...|++|+++.++..+++..+... .. ..+. ...+.++ +..+++
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~---i~~~~~~~~~~~-~~~~~l 75 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK---IKWIEREFDAED-LDDAFL 75 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC---cchhhcccChhh-hcCceE
Confidence 469999999999999999999988 489999999998875544433221 11 1111 1223344 445999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
|+.+++..+ +|++.+..+++-.++||+.
T Consensus 76 viaAt~d~~-----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 76 VIAATDDEE-----LNERIAKAARERRILVNVV 103 (210)
T ss_pred EEEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence 999998433 4677777777777888873
No 251
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.25 E-value=0.029 Score=45.92 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (386)
Q Consensus 175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li 254 (386)
+-+..+++.| +..|++|.+|||.......... .+ ..+.....++++.++.+|+|+++.+. ++-..+-
T Consensus 17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~ 83 (106)
T PF03720_consen 17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKEL------GK-----LEGVEVCDDLEEALKGADAVVLATDH-DEFRELD 83 (106)
T ss_dssp -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH------CH-----HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred CHHHHHHHHH-HHCCCEEEEECCccChHHHHhh------CC-----ccceEEecCHHHHhcCCCEEEEEecC-HHHhccC
Confidence 3567788888 6889999999998765432110 00 01123356899999999999999985 3333332
Q ss_pred cHHHHhcCCCCcEEEEc
Q 016620 255 NKERLATMKKEAILVNC 271 (386)
Q Consensus 255 ~~~~~~~mk~gailIN~ 271 (386)
-.+....|+++.+++++
T Consensus 84 ~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 84 WEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHHSCSSEEEEES
T ss_pred HHHHHHhcCCCCEEEEC
Confidence 34455678889999997
No 252
>PRK12862 malic enzyme; Reviewed
Probab=96.24 E-value=0.11 Score=56.77 Aligned_cols=186 Identities=19% Similarity=0.237 Sum_probs=118.6
Q ss_pred CcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
Q Consensus 109 gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f 188 (386)
+|++.|..- +.+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~~ 215 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VSL 215 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HHc
Confidence 589999744 34566688888888872 23678999999999999999999998 467
Q ss_pred Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620 189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (386)
Q Consensus 189 g~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~ 259 (386)
|. +++.+|+..- .. +..+-..|. +. ....+|+|+++.+|+++-+-- -+.++++.+
T Consensus 216 G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v 279 (763)
T PRK12862 216 GVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLSA-----AGVLKPEMV 279 (763)
T ss_pred CCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHH
Confidence 88 7999995421 00 111111110 11 012589999999999886542 479999999
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCc-----HHHHHHH
Q 016620 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREGM 332 (386)
Q Consensus 260 ~~mk~gailIN~aRg~~vde~aL~~aL~~--g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t-----~~~~~~~ 332 (386)
+.|.+..++.=.|.... |-.=.+|.+. |.|.+-+- ...| =+..|+++-|-++-.. ....+.|
T Consensus 280 ~~M~~~piifalsNP~~--E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m 348 (763)
T PRK12862 280 KKMAPRPLIFALANPTP--EILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEM 348 (763)
T ss_pred HHhccCCEEEeCCCCcc--cCCHHHHHHhcCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHH
Confidence 99999999999888764 2222223333 33333331 1111 3567999999876422 1223445
Q ss_pred HHHHHHHHHHHHcC
Q 016620 333 ATLAALNVLGKIKG 346 (386)
Q Consensus 333 ~~~~~~ni~~~~~g 346 (386)
...+++-|-.+..-
T Consensus 349 ~~aaa~ala~~~~~ 362 (763)
T PRK12862 349 KIAAVRAIAELARE 362 (763)
T ss_pred HHHHHHHHHhcccc
Confidence 55555555554443
No 253
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.22 E-value=0.013 Score=56.61 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=50.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|+++.|||.|.+|++++..| ...|+ +|++++|+..+. ++..+.+ ...... .......++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~----~~~~~~-~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLG----VQVGVI-TRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHh----hhcCcc-eeccchhhhhhcccCCCEE
Confidence 36789999999999999999988 47887 699999986542 2211111 000000 0000012334556789999
Q ss_pred EEccCCC
Q 016620 241 SLHPVLD 247 (386)
Q Consensus 241 vl~lPlt 247 (386)
+.|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999963
No 254
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.21 E-value=0.63 Score=45.45 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=50.3
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+.|.+|+++|= +++.++.+..+ ..+|++|.+..|..-.......+.+ ....| ..+....+++++++++|+|.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy 222 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVY 222 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 78999999998 78899999887 5899999999875422111111100 11111 12334579999999999998
Q ss_pred Ec
Q 016620 242 LH 243 (386)
Q Consensus 242 l~ 243 (386)
.-
T Consensus 223 ~~ 224 (304)
T PRK00779 223 TD 224 (304)
T ss_pred ec
Confidence 75
No 255
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.21 E-value=0.025 Score=55.14 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=57.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc-ccccCCHHHHhhhCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiVvl 242 (386)
++|+|||.|.+|+.+|..|+ ..| -++..+|++.........+.. +.....+.. .....+.+ .+++||+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~~~~a~dL~----~~~~~~~~~~~i~~~~~~-~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKAEGEALDLE----DALAFLPSPVKIKAGDYS-DCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchhhHhHhhHH----HHhhccCCCeEEEcCCHH-HhCCCCEEEE
Confidence 47999999999999999874 556 489999987654221111100 000000110 11123444 4789999999
Q ss_pred ccCCCh---hhh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620 243 HPVLDK---TTY--------HLIN--KERLATMKKEAILVNCS 272 (386)
Q Consensus 243 ~lPlt~---~t~--------~li~--~~~~~~mk~gailIN~a 272 (386)
+..... .++ .++. .+.+....+.+++++++
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 986521 111 1111 12344456788999886
No 256
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.032 Score=57.50 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=70.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
-+.+++|+|+|+|..|.++|+.| +..|++|.++|............ .++..+ ..........+.+..+|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence 36788999999999999999998 68999999999765321111000 011112 11111122245567899998
Q ss_pred EccCCChhhh-----------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 242 LHPVLDKTTY-----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 242 l~lPlt~~t~-----------~li~~-~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
... .=+.+. .++++ +.+ +..+...+-|--+.|+.--..-|...|+..
T Consensus 83 ~Sp-gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 83 KTP-SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred ECC-CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 873 222221 12222 122 223434566777889887777777777653
No 257
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.19 E-value=0.022 Score=53.92 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=58.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
.++-|+|.|.+++++|+.+ +.+|++|.++|+++.... . ..+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~-------------------------~--~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP-------------------------E--DLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc-------------------------c--cCCCCceEEecCCH
Confidence 4799999999999999985 799999999997643100 0 00123333322222
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
.+.+..+.+.+.+|=+.|+.-.|.+.|..+|++.
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~ 186 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRG 186 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence 2233335567788888898889999999998543
No 258
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.17 E-value=0.034 Score=52.57 Aligned_cols=121 Identities=22% Similarity=0.309 Sum_probs=71.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhhhhhhcCC-CCccccccCCH
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM 230 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 230 (386)
+++|++|.|-|+|.+|+.+|+.| ...|++|++. |+..-+ .+....+.....+..... .+.... ..+-
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 106 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN 106 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence 69999999999999999999998 5789998876 544321 111111111000000000 000011 1122
Q ss_pred H-HHh-hhCCEEEEccCCChhhhhcccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 231 ~-ell-~~aDiVvl~lPlt~~t~~li~~~~~~-~mk~ga-ilIN~aRg~~vde~aL~~aL~~g~i 291 (386)
+ +++ ..||+++-|.- .+.|+++... .++.|+ +++-.+-+.+- .++.. .|++..|
T Consensus 107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI 164 (244)
T PF00208_consen 107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGI 164 (244)
T ss_dssp HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-
T ss_pred ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCC
Confidence 2 454 68999998843 5677888877 777665 67777788775 44444 7776654
No 259
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.17 E-value=0.015 Score=55.15 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=63.2
Q ss_pred cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
.|.+++..+|+|+|+ |.||..+||.|+ +-+++....-|....+-.+.... +.+. .+.....+++..+-+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l~~----l~e~----~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRLTL----LQEE----LGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhhhh----cccc----cCCCeeeecccccccc
Confidence 468999999999999 999999999984 66666555544333221111110 1111 1111234555444445
Q ss_pred CEE-EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620 238 DVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (386)
Q Consensus 238 DiV-vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde 279 (386)
|++ .++.- .+-..|+.+. +|||++++|-++..=+|+
T Consensus 232 ~i~v~vAs~---~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 232 DILVWVASM---PKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred ceEEEEeec---CCCceechhh---ccCCeEEEcCCcCccccc
Confidence 554 44322 2345566644 689999999998765543
No 260
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.14 E-value=0.055 Score=52.41 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=48.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC---CHHHHhh
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR 235 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~ 235 (386)
.+.|+++.|+|.|..+++++-.|+ ..|+ +|++++|+.. .+.+...+.+ .............. .+++.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRV----NENTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHh----hhccCceEEEechhhhhhhhhhcc
Confidence 478899999999999999998774 5676 7999999853 2222221111 11000000111111 1334566
Q ss_pred hCCEEEEccCC
Q 016620 236 EADVISLHPVL 246 (386)
Q Consensus 236 ~aDiVvl~lPl 246 (386)
++|+|+.++|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 79999999986
No 261
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.11 E-value=0.032 Score=55.35 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=45.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh-hh-h---cC--CCCccccccCCHHHHhhhCC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LK-A---NG--EQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~-~~-~---~~--~~~~~~~~~~~l~ell~~aD 238 (386)
.+|||+|+|.||+.+++.+...-++++.+........ ..+...+.+. .. . .. ..........++++++..+|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~-~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDY-EARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHH-HHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 3799999999999999987544578877654322211 1111110000 00 0 00 00011222346788888999
Q ss_pred EEEEccCC
Q 016620 239 VISLHPVL 246 (386)
Q Consensus 239 iVvl~lPl 246 (386)
+|+.|.|.
T Consensus 81 VVIdaT~~ 88 (341)
T PRK04207 81 IVVDATPG 88 (341)
T ss_pred EEEECCCc
Confidence 99999985
No 262
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.11 E-value=0.031 Score=57.21 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=69.1
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCc----ccc
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK 225 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~ 225 (386)
|.+|.|++|.|.|+|++|+..|+.| ..+|++|++.+.+.. ..+. +...+..... ...... +.
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~-~~v~~~~~~~ga- 298 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYR-GRIREYAEKYGC- 298 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcC-CchhhhHhhcCC-
Confidence 3579999999999999999999998 589999998543111 1111 1000000000 000000 01
Q ss_pred ccCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHc
Q 016620 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 226 ~~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~-ga-ilIN~aRg~~vde~aL~~aL~~ 288 (386)
...+.++++ ..|||++=|. +.+.|+++...+++. |. +++-.+-| ++..++.....+.
T Consensus 299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~r 358 (444)
T PRK14031 299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDA 358 (444)
T ss_pred EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHC
Confidence 112333432 4689888665 477888888888865 44 56666777 5555555434443
No 263
>PRK12861 malic enzyme; Reviewed
Probab=96.06 E-value=0.14 Score=55.87 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=118.4
Q ss_pred CcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
Q Consensus 109 gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f 188 (386)
.|++.|..- +.+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 799999744 34566688888888872 23678999999999999999999988 567
Q ss_pred Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620 189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (386)
Q Consensus 189 g~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~ 259 (386)
|. +++.+|+..- .. +..+-..| .+. ....+|.|+++.+|+++-+- +.+.++++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~----a~~-------~~~~~L~eai~~advliG~S-----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF----AQE-------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHH----Hhh-------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence 87 7999995431 00 11111111 111 01258999999999887653 1589999999
Q ss_pred hcCCCCcEEEEcCCCccc-CHHHHHHHHHc-CC-cceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCc-----HHHHHH
Q 016620 260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQ-NP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREG 331 (386)
Q Consensus 260 ~~mk~gailIN~aRg~~v-de~aL~~aL~~-g~-i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t-----~~~~~~ 331 (386)
+.|.+.+++.=.|....- ..+ ++.+. |+ |.+- .... . -=+..|+++-|-++-.. ....+.
T Consensus 276 ~~Ma~~PIIFaLsNPtpE~~pe---~a~~~~g~aivaT------Grs~--~-pnQ~NN~l~FPgi~~Gal~~~a~~I~~~ 343 (764)
T PRK12861 276 KAMAARPLILALANPTPEIFPE---LAHATRDDVVIAT------GRSD--Y-PNQVNNVLCFPYIFRGALDVGATTITRE 343 (764)
T ss_pred HHhccCCEEEECCCCCccCCHH---HHHhcCCCEEEEe------CCcC--C-CCccceeeecchhhHHHHHcCCccCCHH
Confidence 999999999998887641 112 22223 33 2221 1111 1 13567999999876422 122345
Q ss_pred HHHHHHHHHHHHHcCC
Q 016620 332 MATLAALNVLGKIKGY 347 (386)
Q Consensus 332 ~~~~~~~ni~~~~~g~ 347 (386)
|...+++-|-.+..-+
T Consensus 344 M~~aAa~alA~~~~~~ 359 (764)
T PRK12861 344 MEIAAVHAIAGLAEEE 359 (764)
T ss_pred HHHHHHHHHHhhCCcc
Confidence 5555556666655443
No 264
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.05 E-value=0.018 Score=57.09 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=60.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh------------HHH----HHHhhhhhhhhhcCCCCcc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------RLE----KFVTAYGQFLKANGEQPVT 223 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~------------~~~----~~~~~~~~~~~~~~~~~~~ 223 (386)
..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+ .+. ...+...+.+++... ...
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-~v~ 97 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-EVE 97 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-CcE
Confidence 5699999999999999999999985 6776 78888876411 000 000000011111110 011
Q ss_pred cc------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 224 ~~------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
.. ...+++++++++|+|+.++ .+.+++.+++.-...
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 11 1134678899999999998 467788887765544
No 265
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.04 E-value=0.16 Score=55.33 Aligned_cols=164 Identities=22% Similarity=0.295 Sum_probs=109.2
Q ss_pred CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
Q Consensus 108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~ 187 (386)
..|++.|..- +.+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 206 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA 206 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence 4689999744 34566688888888872 23578999999999999999999998 46
Q ss_pred CCc---EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620 188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (386)
Q Consensus 188 fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~ 258 (386)
.|. +++.+|+..- .+ +..+-..| .+. ....+|+|+++.+|+++-+- +.+.++++.
T Consensus 207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~----a~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~ 270 (752)
T PRK07232 207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY----AVD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM 270 (752)
T ss_pred cCCCcccEEEEcCCCeecCCCcccccHHHHHH----hcc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 777 7999986521 00 11111111 110 12358999999999887653 157999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCC
Q 016620 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (386)
Q Consensus 259 ~~~mk~gailIN~aRg~~vde~aL~~aL~~--g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~ 323 (386)
++.|.+..++.=.|.... |-.=.+|.+. |.|.+-+ -...| =+..|+++-|-++-
T Consensus 271 v~~M~~~piifalsNP~~--E~~p~~a~~~~~~~i~atG---rs~~p------nQ~NN~~~FPgi~~ 326 (752)
T PRK07232 271 VKSMADNPIIFALANPDP--EITPEEAKAVRPDAIIATG---RSDYP------NQVNNVLCFPYIFR 326 (752)
T ss_pred HHHhccCCEEEecCCCCc--cCCHHHHHHhcCCEEEEEC---CcCCC------CcccceeecchhhH
Confidence 999999999999988775 2222233333 3333333 11112 35678999997754
No 266
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.02 E-value=0.024 Score=55.10 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=43.4
Q ss_pred EEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
|+|||.|.+|..+|..++. +++ +|+.+|.+.........+.... .... ..........+.+ .+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~-~~~~-~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA-APIL-GSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh-hhhc-CCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999988742 334 9999998764321111111110 0110 1111222234554 4799999999763
No 267
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.02 E-value=1.1 Score=43.90 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=48.3
Q ss_pred cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
+.|++|+++|= |++..+++..+ ..||+++.+..|..-. . .... ......+++|.++++|+
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~--~------------~~~~--~~~~~~d~~ea~~~aDv 216 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLL--P------------EGMP--EYGVHTDLDEVIEDADV 216 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccC--c------------cccc--ceEEECCHHHHhCCCCE
Confidence 78999999987 58999999987 5899999999874321 0 0000 12345789999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|....
T Consensus 217 vyt~~ 221 (305)
T PRK00856 217 VMMLR 221 (305)
T ss_pred EEECC
Confidence 97743
No 268
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.02 E-value=0.96 Score=44.76 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=49.9
Q ss_pred cCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 163 l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
+.|++|+++|-+ ++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..+ .......++++.+++||+|
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv 228 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVI 228 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 789999999975 7888888886 579999999987532111111110000001111 1233457999999999999
Q ss_pred EEc
Q 016620 241 SLH 243 (386)
Q Consensus 241 vl~ 243 (386)
..-
T Consensus 229 y~~ 231 (332)
T PRK04284 229 YTD 231 (332)
T ss_pred EEC
Confidence 885
No 269
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.01 E-value=0.19 Score=47.59 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-----------E
Q 016620 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N 191 (386)
Q Consensus 123 vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-----------~ 191 (386)
+|=.+++-+|+.+|- .|+.|.+.+|.|+|.|.-|-.+|+.|. ..++ +
T Consensus 4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~ 61 (254)
T cd00762 4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR 61 (254)
T ss_pred hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence 455677778887772 235789999999999999999999884 4444 6
Q ss_pred EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCC-
Q 016620 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (386)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk- 263 (386)
++.+|+..- ..+..+...+.+..+. .....+|.|+++ +.|+++-.. ..-++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~ 130 (254)
T cd00762 62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE 130 (254)
T ss_pred EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence 888887621 0011111110000010 112368999999 999998754 235799999999998
Q ss_pred --CCcEEEEcCCCcccCHHHHHHHHHc--C-CcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcH-----HHHHHH
Q 016620 264 --KEAILVNCSRGPVIDEVALVEHLKQ--N-PMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK-----WTREGM 332 (386)
Q Consensus 264 --~gailIN~aRg~~vde~aL~~aL~~--g-~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~~ 332 (386)
+..++.=.|....--|-.=.++.+- | .|.+-+.-.+..+---. ...-+..|+++-|-++-... ...+.|
T Consensus 131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m 210 (254)
T cd00762 131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV 210 (254)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence 8899998888766334333344443 3 23333322111111000 12346789999998875221 122455
Q ss_pred HHHHHHHHHHHHcCC
Q 016620 333 ATLAALNVLGKIKGY 347 (386)
Q Consensus 333 ~~~~~~ni~~~~~g~ 347 (386)
...+++-|-.+..-+
T Consensus 211 ~~aAA~aLA~~v~~~ 225 (254)
T cd00762 211 FLSAAEAIASSVTEE 225 (254)
T ss_pred HHHHHHHHHhhCChh
Confidence 555666666655443
No 270
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.98 E-value=0.0084 Score=60.24 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=44.7
Q ss_pred EEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEEEEcc
Q 016620 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
|+|+|.|.+|+.+++.|++.... +|++.||+...... ..+. +...... ........+++++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEK----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhh----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 78999999999999998655556 89999998765221 1100 0000000 001111234778999999999999
Q ss_pred CC
Q 016620 245 VL 246 (386)
Q Consensus 245 Pl 246 (386)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 74
No 271
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.96 E-value=0.027 Score=63.23 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (386)
..++|+|||.|.||+..|+.|++.-+.+ |.+.|++.... ++..+.+ .+...... .+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence 4678999999999999999986544444 88899886542 1111111 01100111 12344
Q ss_pred HH---HhhhCCEEEEccCC
Q 016620 231 DE---VLREADVISLHPVL 246 (386)
Q Consensus 231 ~e---ll~~aDiVvl~lPl 246 (386)
++ +++.+|+|++|+|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 44 44689999999996
No 272
>PRK11579 putative oxidoreductase; Provisional
Probab=95.96 E-value=0.051 Score=53.77 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=44.4
Q ss_pred CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv 241 (386)
.+|||||+|.||+. .+..+.+.-++++. ++|++....... + . ....+.+++++++ +.|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~----~-------~----~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKAD----W-------P----TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhh----C-------C----CCceeCCHHHHhcCCCCCEEE
Confidence 47999999999985 55655333478876 567765432110 0 0 1123579999996 579999
Q ss_pred EccCCC
Q 016620 242 LHPVLD 247 (386)
Q Consensus 242 l~lPlt 247 (386)
+|+|..
T Consensus 70 I~tp~~ 75 (346)
T PRK11579 70 IPTPND 75 (346)
T ss_pred EcCCcH
Confidence 999963
No 273
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.95 E-value=0.048 Score=55.38 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=62.7
Q ss_pred ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (386)
Q Consensus 162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (386)
.+.|++|+|+|+ .+-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~------------~-----~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK------------G-----LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh------------h-----cccCCCHH
Confidence 479999999998 56788899998 58899999999986442110 0 01246888
Q ss_pred HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
+.++.||+|+++.+.. + ..-++-+.+..+-+..+++|.
T Consensus 372 ~~~~~ad~~v~~t~~~-~-~~~~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTDHD-E-FKDLDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecCCH-H-HhccCHHHHHHhcCCCEEEeC
Confidence 9999999999999852 2 222454444443334577774
No 274
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.91 E-value=0.043 Score=45.00 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=53.2
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCEEEEc
Q 016620 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH 243 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiVvl~ 243 (386)
|.|+|+|.+|+.+++.| +..+.+|++.|.++..... ++..+ .........+.+.+ ++++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEG-VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhcc-cccccccchhhhHHhhcCccccCEEEEc
Confidence 57999999999999998 5666699999988754221 12222 11111122333222 5889999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEE
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILV 269 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailI 269 (386)
.+... .++.-...++.+-+...++
T Consensus 70 ~~~d~--~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 70 TDDDE--ENLLIALLARELNPDIRII 93 (116)
T ss_dssp SSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred cCCHH--HHHHHHHHHHHHCCCCeEE
Confidence 98643 3333344555555554444
No 275
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.89 E-value=0.76 Score=45.55 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|.+|+++|-+ ++..+++..+ ..||+++.+..|..-...+.+.+...+..+..+ .......++++.++++|+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4889999999976 6789999886 579999999987542211111110000011112 223345799999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|..-.
T Consensus 229 vytd~ 233 (336)
T PRK03515 229 IYTDV 233 (336)
T ss_pred EEecC
Confidence 98863
No 276
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.87 E-value=0.032 Score=56.96 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=48.6
Q ss_pred CeEEEEecChhHHHHHH--HHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 166 QTVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~--~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+|+|||.|++|...+- .++. ++ |.+|..||++...... ........... ...........++++.++.||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence 37999999999998554 2221 33 5699999998754221 11100011111 11223334457889999999999
Q ss_pred EEccCC
Q 016620 241 SLHPVL 246 (386)
Q Consensus 241 vl~lPl 246 (386)
+++.|.
T Consensus 79 i~ai~~ 84 (423)
T cd05297 79 INTIQV 84 (423)
T ss_pred EEeeEe
Confidence 999983
No 277
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.84 E-value=0.053 Score=57.62 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=49.8
Q ss_pred EEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620 111 AVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
Q Consensus 111 ~v~n~~-~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g-~~l~g~~vgIvG~G~IG~~iA~~L~~~f 188 (386)
++.+-. .......||.++-+=|-+.| |.-....+ ..|++.+|.|+|.|.+|..+|+.|+ ++
T Consensus 298 r~~dL~~~mdP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La-~~ 360 (664)
T TIGR01381 298 ISVDLSKEFDPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLI-GW 360 (664)
T ss_pred eEechhhhcCHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHH-Hc
Confidence 444433 23566778888877777766 43222222 5689999999999999999999984 78
Q ss_pred Cc-EEEEEcC
Q 016620 189 KM-NLIYYDL 197 (386)
Q Consensus 189 g~-~V~~~d~ 197 (386)
|. ++..+|.
T Consensus 361 GVg~ItlVD~ 370 (664)
T TIGR01381 361 GVRHITFVDN 370 (664)
T ss_pred CCCeEEEEcC
Confidence 87 5777774
No 278
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.83 E-value=1.6 Score=43.26 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=50.7
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|.+|+++|-+ ++..+.+..+ ..+|++|.+..|..-...+.+.+...+..+..+ ..+....++++.++.+|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999975 7888888876 579999999887542111111110000011111 123345789999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|..-.
T Consensus 229 vyt~~ 233 (334)
T PRK12562 229 IYTDV 233 (334)
T ss_pred EEEcC
Confidence 98764
No 279
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.1 Score=53.42 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=72.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+.++++.|+|.|.+|.++|+.| ...|++|+++|+..........+. +...+ .........++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence 36789999999999999999998 589999999998753322221111 11112 11212222345667899999
Q ss_pred EccCCChhhhhc----------ccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 242 LHPVLDKTTYHL----------INK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 242 l~lPlt~~t~~l----------i~~-~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
.+.-..+....+ +.. +.+.+ .+...+-|--+.|+.--..-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 876544332211 111 12222 233355566677887777777777765
No 280
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.76 E-value=0.25 Score=49.86 Aligned_cols=196 Identities=17% Similarity=0.112 Sum_probs=117.6
Q ss_pred hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
Q Consensus 107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~ 186 (386)
+..|+|.|..- +.+|=.+++-+|+.+|- .|+.|+..+|.+.|.|.-|-.+++.| .
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 44578877654 45577788888888872 34679999999999999999999998 6
Q ss_pred cCCc---EEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 187 GFKM---NLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 187 ~fg~---~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
+.|+ +|+.+|+..-- +.+.....+....... ... .... ++.+..+|+++-+-- .+.+.++.++
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~--~~~---~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~ 288 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIE--DTG---ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK 288 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHh--hhc---cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence 7888 69999976321 0000000000000000 000 0111 447889999887653 3899999999
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcH-----HHHHHHHHH
Q 016620 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGMATL 335 (386)
Q Consensus 261 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~~~~ 335 (386)
.|.+..++.=.|-...--....+....+ ++++=.+ .-|. .|- +..|+++-|.+.-... ..-+.|..-
T Consensus 289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~----~aaivaT-Grsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~A 360 (432)
T COG0281 289 EMAKHPIIFALANPTPEITPEDAKEWGD----GAAIVAT-GRSD--YPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIA 360 (432)
T ss_pred HhccCCEEeecCCCCccCCHHHHhhcCC----CCEEEEe-CCCC--Ccc-cccceeEcchhhhhhHhhccccCCHHHHHH
Confidence 9999999988887663111222222221 2222111 1221 121 7789999999875322 223455555
Q ss_pred HHHHHHHHHcC
Q 016620 336 AALNVLGKIKG 346 (386)
Q Consensus 336 ~~~ni~~~~~g 346 (386)
+++-|..+..-
T Consensus 361 Aa~AiA~~~~~ 371 (432)
T COG0281 361 AAEAIADLARE 371 (432)
T ss_pred HHHHHHhhccc
Confidence 66666666543
No 281
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.024 Score=57.74 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
.++|.|+|+|.+|.++|+.| +..|.+|.++|++....... . + ... .. ....+.+..++|+|+.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~-~---~~~------~~--~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--P-Y---IHE------RY--LENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--H-H---Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence 36899999999999999998 68999999999865421100 0 0 000 00 112334457799998887
Q ss_pred CCChhhh----------hcccHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 245 Plt~~t~----------~li~~~~~--~~--m-k~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
+..+... .++.+..+ .. + +...+=|--+.|+.--..=|...|+.
T Consensus 68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 6553211 12333222 21 2 22346666677887666667777765
No 282
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.71 E-value=0.014 Score=50.29 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=67.7
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCcccc-ccCCHHHHhhhCCEEEEccC
Q 016620 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV 245 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~aDiVvl~lP 245 (386)
|+|+|.|.||.-+|-+|+ ..|.+|..+++.. . .+.. ...+-.+.... ....... ...+..+....+|+|++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 689999999999999985 5899999999876 2 1111 10000011001 0000000 11122245788999999997
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG 295 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaa 295 (386)
.. ++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++.
T Consensus 77 a~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 77 AY-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp GG-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred cc-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 53 34444433 44555677677766555 44456666666444454443
No 283
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.65 E-value=0.073 Score=54.49 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=71.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE--------EcCChhhH-----HHHHHhhhhhhhhhc-CCCCccccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKAN-GEQPVTWKR 226 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~ 226 (386)
.++.|+||.|-|+|++|+..|+.| ...|++|++ ||+..-.. +.++.+...+..... ...+ +...
T Consensus 224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~ 301 (445)
T PRK14030 224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTF 301 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEE
Confidence 469999999999999999999998 689999999 77542211 111111000000000 0000 1111
Q ss_pred cCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 227 ~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 291 (386)
.+-++++ ..||+++-|. +.+.|+++...++. +-.+++-.+-| ++..+|- +.|.+..|
T Consensus 302 -i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 302 -FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred -cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 1223333 4688887665 57788888777773 23477888888 4555443 56666544
No 284
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.63 E-value=0.039 Score=53.92 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=46.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcC-C-CCccccccCCHHHHhhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~ell~~aDiVv 241 (386)
++|+|||.|.+|..+|..|+ ..| .+|..+|++.........+. .... . .+... ...+. +.+++||+|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~i-~~~d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVRI-YAGDY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence 47999999999999999874 556 58999998764321111111 1000 0 01111 12344 5589999999
Q ss_pred EccCCC
Q 016620 242 LHPVLD 247 (386)
Q Consensus 242 l~lPlt 247 (386)
++.+..
T Consensus 73 ita~~~ 78 (308)
T cd05292 73 ITAGAN 78 (308)
T ss_pred EccCCC
Confidence 998863
No 285
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.63 E-value=0.06 Score=44.88 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=62.8
Q ss_pred CeEEEEe----cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG----~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
|+|+||| -|..|..+.+.| +..|.+|+..++..... . +...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-----------------~--G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-----------------L--GIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-----------------T--TEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-----------------C--cEEeeccccCCCCCCCEEE
Confidence 5799999 789999999998 57999999999865431 1 1224578887448899999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 292 (386)
+++|. +.+..++ ++. ..+..+.+++..+ ..++++.+.+++..+.
T Consensus 61 v~~~~-~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 61 VCVPP-DKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp E-S-H-HHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred EEcCH-HHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 99994 2333443 222 2345677888877 5677788888776554
No 286
>PLN02342 ornithine carbamoyltransferase
Probab=95.61 E-value=2.4 Score=42.26 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=49.1
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|.+|+++|= .++..+++..+ ..||++|.+..|..-...+...+. .+..+. ..+....++++.++.||+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 378999999987 35677777765 579999999987542211111110 111111 1233457899999999999
Q ss_pred EEcc
Q 016620 241 SLHP 244 (386)
Q Consensus 241 vl~l 244 (386)
..-.
T Consensus 264 y~~~ 267 (348)
T PLN02342 264 YTDV 267 (348)
T ss_pred EECC
Confidence 8764
No 287
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.59 E-value=0.031 Score=48.03 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=50.0
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC
Q 016620 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt 247 (386)
+-|+|.|.+|+++++.+ +.+|++|.++|+++.. +..++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999985 7999999999986421 11333322 2221
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (386)
Q Consensus 248 ~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal 296 (386)
++.. +.+ .+.+++.+| ++++.-.|.+.|..+|++. ....++
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~~-~~YiG~ 86 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALASP-ARYIGL 86 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTSS--SEEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcCC-CCEEEe
Confidence 1110 111 356666666 8888889999998888863 444443
No 288
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.042 Score=51.25 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=49.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVvl~l 244 (386)
+++.|+|+|..|.++|+.| ...|.+|...|++.....+...+.+ ........ .....-|+++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd-~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGD-ATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEec-CCCHHHHHhcCCCcCCEEEEee
Confidence 5799999999999999998 6899999999988765322110000 00000000 0011234555 78899999999
Q ss_pred CCChh
Q 016620 245 VLDKT 249 (386)
Q Consensus 245 Plt~~ 249 (386)
..+..
T Consensus 75 ~~d~~ 79 (225)
T COG0569 75 GNDEV 79 (225)
T ss_pred CCCHH
Confidence 86543
No 289
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.027 Score=55.69 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=45.9
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhhCCEEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLREADVIS 241 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDiVv 241 (386)
+++|||||-|-.|+.++.. ++.+|.+|++.|+.......... .......+ ..+.++++.||+|.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVIT 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEE
Confidence 4799999999999999998 57999999999988764222110 00001111 25778899999995
Q ss_pred E
Q 016620 242 L 242 (386)
Q Consensus 242 l 242 (386)
-
T Consensus 68 ~ 68 (375)
T COG0026 68 Y 68 (375)
T ss_pred E
Confidence 3
No 290
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.47 E-value=0.05 Score=50.69 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=59.8
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCC
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREAD 238 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aD 238 (386)
.-.+.|++|.|||-|.++..=++.| ..+|++|.++.+...+....... .+. ..+.. ..+. +-+..++
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~~ 87 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDKH 87 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCCc
Confidence 3467899999999999999977777 47999999999887655433211 111 11111 1122 3457899
Q ss_pred EEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
+|+.|+.... +|......++..-+++|+
T Consensus 88 LViaATdD~~-----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 88 LIVIATDDEK-----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred EEEECCCCHH-----HHHHHHHHHHHcCCeEEE
Confidence 9999986322 344444445443455554
No 291
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.47 E-value=0.058 Score=52.89 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=59.4
Q ss_pred CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|+|||.|.+|..+|-.|+ ++..-++..+|.+.........+.- ....... .......+.++ +++||+|+++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~----~~~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQ----HGSAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHH----HhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 48999999999999998764 2455589999987643222222211 1111111 12222245665 7999999996
Q ss_pred cCC--Ch-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620 244 PVL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPl--t~-~t~-~li--~~-------~~~~~mk~gailIN~aR 273 (386)
.-. .+ .|+ .++ |. +.+....+.+++++++-
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 432 21 233 111 11 23334467889999873
No 292
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.035 Score=57.71 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
..|++|.|+|+|.+|.+.++.| +..|++|+++|..... .+. ++..+. .........+.+..+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence 5789999999999999999987 6899999999965432 111 111121 11111223455678999988
Q ss_pred ccCCChhhh----------hcccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 243 ~lPlt~~t~----------~li~~~~~~-~m--------k~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
+....+... .++++-.+. +. +...+-|--+-|+.--..-|...|+.
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 864433221 233332221 11 11345566677887766767777765
No 293
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.43 E-value=0.046 Score=56.45 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=52.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+++|++|.|||-|.++..=++.| ..+|++|.++.+...+...... ..+. ..+..-.-.++.+..+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCCC--EEEEeCCCChHHhCCCEEE
Confidence 479999999999999999977777 4799999999987655443221 1111 1121111123557889999
Q ss_pred EEccCCCh
Q 016620 241 SLHPVLDK 248 (386)
Q Consensus 241 vl~lPlt~ 248 (386)
+.|+....
T Consensus 77 ~~at~d~~ 84 (457)
T PRK10637 77 IAATDDDA 84 (457)
T ss_pred EECCCCHH
Confidence 88887543
No 294
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.40 E-value=0.068 Score=53.85 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=61.9
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhhCCEE
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI 240 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDiV 240 (386)
..-++|+|+|. |.+|+.+.+.|..-=+.++..+.++...- ......+. .+.. + . .....+++ +.++++|+|
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~-~l~~-~--~--~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFP-HLIT-Q--D--LPNLVAVKDADFSDVDAV 108 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCc-cccC-c--c--ccceecCCHHHhcCCCEE
Confidence 35568999998 99999999998433367888776543220 00000000 0000 0 0 01111222 225889999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~ 283 (386)
++++|.. . ..+....|+.|..+|+.|..-..+.++.+
T Consensus 109 f~Alp~~-~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 109 FCCLPHG-T-----TQEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred EEcCCHH-H-----HHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 9999952 2 34444446678999999865555544433
No 295
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.36 E-value=0.14 Score=52.44 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCCh---------hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR 226 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 226 (386)
+.++.|+||.|-|+|++|+..|+.| ..+|++|+ +.|.+. ...+....+ .....+........+...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 3579999999999999999999998 58999999 444440 111110000 000000000000001111
Q ss_pred cCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016620 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPM 291 (386)
Q Consensus 227 ~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~m-k~ga-ilIN~aRg~~vde~aL~~aL~~g~i 291 (386)
. +-++++ ..||+.+-|. +.+.|+.+....+ +.++ +++-.+-+++-. +| .+.|++..|
T Consensus 311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA-~~~L~~~GI 370 (454)
T PTZ00079 311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EA-THLFKKNGV 370 (454)
T ss_pred e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HH-HHHHHHCCc
Confidence 1 122222 4689888765 5777888877755 4444 566667777644 33 356665544
No 296
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.34 E-value=0.077 Score=50.79 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=44.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|+|+| +|.||+.+++.+...-++++.+ +|+.......... ....+..+.+.....+++++...+|+|+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~------~~~~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA------GELAGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH------HHhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 3799999 6999999999875456788664 6643221100000 000111111223346888886679999999
Q ss_pred cC
Q 016620 244 PV 245 (386)
Q Consensus 244 lP 245 (386)
.|
T Consensus 76 T~ 77 (266)
T TIGR00036 76 TT 77 (266)
T ss_pred CC
Confidence 86
No 297
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.22 E-value=0.075 Score=52.84 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=56.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
++|+|+|. |.+|+.+++.|. .. +.++. .++++.... ....+.++ .+. +.....+ ...+.++++.++|+|++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~-~~~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNL-EPIDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence 47999998 999999999984 55 67777 345443110 00000010 000 0001111 11255666668999999
Q ss_pred ccCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccC
Q 016620 243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID 278 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~m-k~gailIN~aRg~~vd 278 (386)
|+|.. .. .+....+ +.|..+|+.|-.-=.+
T Consensus 75 alP~~-~s-----~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 75 ALPHG-VS-----AELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred CCCch-HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence 99953 22 2222222 5688899987533333
No 298
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.21 E-value=0.047 Score=50.90 Aligned_cols=107 Identities=23% Similarity=0.193 Sum_probs=62.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCC-CCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGE-QPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~-~~~~~ 224 (386)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. + .++ .+...+.+++... .....
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999985 5677 677887543210 0 000 0000011111110 00000
Q ss_pred c----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 225 ~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
. ...+++++++++|+|+.|+. +.+++.++++...+ .+.-+|.++
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 0 01245678889999999986 56777777765554 345566654
No 299
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.13 Score=49.63 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=68.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
...|+++.|+|.|..+++++..| +..|+ +|++++|+.... ++..+.+ .+.+. ........+++. ..++|+|
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~ra-~~La~~~----~~~~~-~~~~~~~~~~~~-~~~~dli 194 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRERA-EELADLF----GELGA-AVEAAALADLEG-LEEADLL 194 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh----hhccc-cccccccccccc-ccccCEE
Confidence 56899999999999999999988 46785 799999987642 2211111 11110 000111122222 1269999
Q ss_pred EEccCCChhhh--h-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 241 vl~lPlt~~t~--~-li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
+.++|..-.-. . +++ ...++++.++.++--.+. ++.=|..|=+.|
T Consensus 195 INaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 195 INATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred EECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 99999744322 1 233 455677778877765543 333333333334
No 300
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.23 Score=49.82 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=80.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH-------HHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-------FVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
++|.|+|.|=+|...+-+|+ .+|.+|+.+|....+-..- |.....+.+++....+ +.....+.++.++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA-~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLA-ELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcCC
Confidence 57999999999999999985 8999999999876542110 0001112222222111 1233468888999999
Q ss_pred EEEEccCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 239 VISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~--------~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
++++|+|..+.-.+-+| ++....++..+++|+=|.-.+=-.+.+.+-+...
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~ 137 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE 137 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence 99999986554333222 3456667777999999997765556666555543
No 301
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.19 E-value=0.33 Score=48.78 Aligned_cols=105 Identities=25% Similarity=0.200 Sum_probs=60.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-H-----------HHHhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-E-----------KFVTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~-----------~~~~~~~~~~~~~~~~~~~~~ 225 (386)
..+.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-.. + + ...+...+.+++... .....
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~v~v~ 208 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP-DVQVE 208 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC-CCEEE
Confidence 4689999999999999999999985 6677 688888762100 0 0 000000011111110 01111
Q ss_pred c------cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 226 R------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 226 ~------~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
. ..+++++++++|+|+.|+- +.+++.++++...+ .+.-+|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~ 256 (376)
T PRK08762 209 AVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYG 256 (376)
T ss_pred EEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEE
Confidence 0 1235667889999988885 45667777665443 33444544
No 302
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.17 E-value=0.11 Score=50.67 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|+|+|.|.||.-+|-.|+ ..|.+|..++|... ..+.....-+=.+...+.. ..+.....-.+.....|+|++|+-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 47999999999999999984 66899999998642 2221111000000001110 000000111122467899999996
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal 296 (386)
.. ++...+ +.....+.+++.++-.--| +-.++.+.+.+.+.++.++..
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 43 233332 3455566788877666443 345666777776555555443
No 303
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.19 Score=51.35 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=69.4
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh-CCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiVv 241 (386)
+.|+++.|+|.|.+|.++|+.| ...|++|+++|+......+. .+ .+...+. .........+++.. .|+|+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLMV 73 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEEE
Confidence 6789999999999999999998 58999999999764321110 00 0111121 11111122344444 89988
Q ss_pred EccCCChhh----------hhcccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 242 LHPVLDKTT----------YHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 242 l~lPlt~~t----------~~li~~~~~-~~m-k~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
...-..++. ..++.+..+ ..+ +...+-|--+.|+.--..-|...|+..
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 876222211 123333322 233 344566777889887777777777653
No 304
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.13 E-value=0.11 Score=51.91 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=61.5
Q ss_pred cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (386)
Q Consensus 163 l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (386)
|.|++|||+|+- +-...++++| +..|++|.+|||........ ..+ ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~-------------~~~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR-------------NFP-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh-------------cCC-CceEeCCHHH
Confidence 899999999984 4567888998 78999999999976542211 011 2234679999
Q ss_pred HhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 233 ll~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
+++.||+++++..- ++-+.+ +-+.+ .|| +.++++
T Consensus 373 ~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence 99999999999862 343433 33333 566 445554
No 305
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.01 E-value=0.12 Score=53.58 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=70.7
Q ss_pred ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh-hhh---hc------CCCC
Q 016620 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ-FLK---AN------GEQP 221 (386)
Q Consensus 162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~-~~~---~~------~~~~ 221 (386)
.+.|++|+|+|+ .+-...+++.| ...|.+|.+|||........ ..+.. .+. .. ...+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 56788999998 57899999999985432110 00000 000 00 0000
Q ss_pred ccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV 283 (386)
Q Consensus 222 ~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~gailIN~aRg~~vde~aL~ 283 (386)
.......++++.++.||+|+++.+. ++-+. ++-+ ....|++..+++|. |+ ++|.+.+.
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 0112345677899999999999985 33333 3433 35668766688885 53 45655553
No 306
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.91 E-value=0.36 Score=46.69 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=49.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhhCCE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+.|+++.|+|.|..|++++-.|+ ..|+ +|++++|+..+. ++..+. +... +..........++++.+..+|+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~----~~~~~~~~~~~~~~~~~~~~~~~~~di 197 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADV----INNAVGREAVVGVDARGIEDVIAAADG 197 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHH----HhhccCcceEEecCHhHHHHHHhhcCE
Confidence 356889999999999999999874 5787 799999986542 221111 1100 0000000011123445678999
Q ss_pred EEEccCC
Q 016620 240 ISLHPVL 246 (386)
Q Consensus 240 Vvl~lPl 246 (386)
|+.++|.
T Consensus 198 vINaTp~ 204 (283)
T PRK14027 198 VVNATPM 204 (283)
T ss_pred EEEcCCC
Confidence 9999995
No 307
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.90 E-value=0.1 Score=48.25 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=31.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~ 198 (386)
..|.+++|+|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 4589999999999999999999985 4566 58888876
No 308
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.89 E-value=0.25 Score=48.02 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.|++++|||--.=-..++++| ...|++|+++.-.... | ...+.....+.+++++++|+|+.-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence 378999999888888899998 5789988865321110 0 011222334678889999999999
Q ss_pred cCCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016620 244 PVLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (386)
Q Consensus 244 lPlt~~t~----------~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 293 (386)
+|.+.+.. --++.+.+++|++|..++ ++.+.. . +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE
Confidence 88754331 113578999999998444 344332 1 334455555554
No 309
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=94.89 E-value=0.96 Score=45.20 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=48.4
Q ss_pred ccCCCeEEEEecCh--------hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620 162 LLKGQTVGVIGAGR--------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (386)
Q Consensus 162 ~l~g~~vgIvG~G~--------IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (386)
.+.|++|+|+|.|. +.++++..+ ..||++|.+..|..-...+...+.-.+..+..+ .......+++|.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 37899999998643 446777776 579999999987632111111110000011112 223345799999
Q ss_pred hhhCCEEEEcc
Q 016620 234 LREADVISLHP 244 (386)
Q Consensus 234 l~~aDiVvl~l 244 (386)
++++|+|..-.
T Consensus 243 ~~~aDvvyt~~ 253 (357)
T TIGR03316 243 FKDADIVYPKS 253 (357)
T ss_pred hCCCCEEEECC
Confidence 99999998764
No 310
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.87 E-value=0.07 Score=51.82 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=58.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-------------HhhhhhhhhhcCCCCcccc----
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-------------VTAYGQFLKANGEQPVTWK---- 225 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-------------~~~~~~~~~~~~~~~~~~~---- 225 (386)
+|.|+|.|.+|..+|+.|+ .+|. ++..+|...-.. + +++ .+...+.+++.. ......
T Consensus 1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iN-P~v~v~~~~~ 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIF-PSIDATGIVL 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHC-CCcEEEEeee
Confidence 5899999999999999985 6777 577777432110 0 000 000001111110 000010
Q ss_pred -------------------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 226 -------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 226 -------------------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
....++++++++|+|+.++ .+.+++.+++.-.... +..+|+.+-
T Consensus 79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred eccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 1123678999999999999 4678888877655443 336666543
No 311
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.86 E-value=0.14 Score=52.33 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=48.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCc-c-ccccCCHHHH-hhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-T-WKRASSMDEV-LREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~l~el-l~~aDiVv 241 (386)
++|.|+|+|.+|+.+|+.| ...|.+|+++|++...... ++. .+..-. + ......++++ +.++|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~~---------~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLRR---------LQDRLDVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHHH---------HHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 4799999999999999998 5789999999987654211 111 110000 0 0112345555 78899999
Q ss_pred EccCCChh
Q 016620 242 LHPVLDKT 249 (386)
Q Consensus 242 l~lPlt~~ 249 (386)
++++....
T Consensus 71 ~~~~~~~~ 78 (453)
T PRK09496 71 AVTDSDET 78 (453)
T ss_pred EecCChHH
Confidence 99986443
No 312
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.76 E-value=0.081 Score=52.47 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=59.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH-------------HH---HHHhhhhhhhhhcC-CCCc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANG-EQPV 222 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~-~~~~ 222 (386)
..|..++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. .. ...+...+.+++.. ....
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999999999985 5677 899998753110 00 00000001111111 0000
Q ss_pred ccc----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 223 ~~~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
... ...++.++++++|+|+.|+- +.+++.++++...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~ 139 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK 139 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 000 11245678899999998875 56778888776554
No 313
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.75 E-value=0.11 Score=54.74 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=34.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
..+.++++.|+|.|.+|++++..| ...|++|++++|+...
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~ 414 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER 414 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 357889999999999999999998 4788999999987543
No 314
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.16 Score=50.00 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=59.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCC
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD 238 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD 238 (386)
..|++|.|.|.|.+|...++.+ +..|+ +|++.+++.... + . .++.+..........++++... ..|
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-S-L-------AREMGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-H-H-------HHHcCCcEEecCCcccHHHHhccCCCCC
Confidence 3689999999999999999975 78998 688888765432 1 1 1222221111111123344332 268
Q ss_pred EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|+-+... +.+ -...++.++++..++.++.
T Consensus 238 ~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSGH-PSS----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence 88877753 111 1456677888888888865
No 315
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=94.74 E-value=0.74 Score=47.05 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=73.7
Q ss_pred cEEEEccccccccChhHHhhCCcEEecCC-CCC---chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccccc
Q 016620 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTP-GVL---TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (386)
Q Consensus 88 k~i~~~~~G~d~id~~~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l 163 (386)
.+|+.+.-+-..+ .+.++..+|+|.|.- |.. +++.|+. +.+.+++ |. .|..+
T Consensus 184 D~IviR~~~~~~~-~e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~---------~g~~l 239 (429)
T PRK11891 184 DALVIRHPEQGSV-AEFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR---------LGKIV 239 (429)
T ss_pred CEEEEeCCchhHH-HHHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc---------cCCCc
Confidence 5666664333333 233456689999976 333 3444442 2222211 10 12348
Q ss_pred CCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 164 KGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 164 ~g~~vgIvG~G---~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.|++|+++|-+ ++..+.+..+ ..+ |++|.+..|..-...+.+.+. ++.. +..+....+++|.+++||+
T Consensus 240 ~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~ADV 311 (429)
T PRK11891 240 DGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGADV 311 (429)
T ss_pred CCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCCCE
Confidence 99999999984 8889988876 355 999999887542111111111 1111 2223345799999999999
Q ss_pred EEEcc
Q 016620 240 ISLHP 244 (386)
Q Consensus 240 Vvl~l 244 (386)
|....
T Consensus 312 VYt~~ 316 (429)
T PRK11891 312 VYATR 316 (429)
T ss_pred EEEcC
Confidence 98844
No 316
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.74 E-value=0.19 Score=51.26 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHH----HhhhC
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE----VLREA 237 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e----ll~~a 237 (386)
+..+++.|+|+|.+|+.+++.| ...|.+|+++|.++.... .. +... ..........+.+. -+.++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~~-~~--------~~~~~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERAE-EL--------AEELPNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HH--------HHHCCCCeEEECCCCCHHHHHhcCCccC
Confidence 4568899999999999999998 678999999998765321 11 1110 00000111122222 25789
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
|.|+++++.+. .+++.....+.+....+++-+
T Consensus 299 ~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 299 DAFIALTNDDE--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CEEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence 99999888643 333334444445555455443
No 317
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.72 E-value=1 Score=44.06 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=48.2
Q ss_pred cCCCeEEEEec---ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
+.|.+|+++|= +++..+.+..+ ..||+ +|.+..|..-. +. ......+....++++.++.+|
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence 78999999998 59999999987 58999 99998874311 10 000012334578999999999
Q ss_pred EEEEc
Q 016620 239 VISLH 243 (386)
Q Consensus 239 iVvl~ 243 (386)
+|...
T Consensus 220 vvy~~ 224 (310)
T PRK13814 220 VIVTL 224 (310)
T ss_pred EEEEC
Confidence 99873
No 318
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.69 E-value=0.24 Score=48.30 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=51.3
Q ss_pred ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 162 ~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
.+.|.+|+++|-| ++..+.+..+ ..||++|.+..|..-...+.+.+. .+.. +..+....++++.++.||
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAK---GIKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHc---CCEEEEECCHHHHhCCCC
Confidence 3789999999995 9999999987 589999999987543111111111 1111 122334579999999999
Q ss_pred EEEEc
Q 016620 239 VISLH 243 (386)
Q Consensus 239 iVvl~ 243 (386)
+|..-
T Consensus 219 vvyt~ 223 (301)
T TIGR00670 219 VLYVT 223 (301)
T ss_pred EEEEC
Confidence 99774
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.69 E-value=0.39 Score=44.43 Aligned_cols=98 Identities=19% Similarity=0.146 Sum_probs=59.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-----hhhC
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA 237 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a 237 (386)
..|.+|.|+|.|.+|+.+++.+ +..|.+|++.+++..... +.. ..+..........+..+. -...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKLE--LAK-------ELGADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHH-------HhCCceeccCCcCCHHHHHHHhcCCCC
Confidence 4678999999999999999985 789999999988754321 111 111111000001112111 2457
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+++.+.+... .-...+..|+++..+++++...
T Consensus 203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence 88888776421 1244567788888888877654
No 320
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.68 E-value=0.14 Score=50.85 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=64.0
Q ss_pred eEEEEecChhHHHHHHHHHh---------cCCcEEEE-EcCChh---------hHHHHHHhhhhhhhhhcCCCCc--ccc
Q 016620 167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQPV--TWK 225 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~---------~fg~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~ 225 (386)
+|||+|+|.||+.+++.|.+ +.+.+|.+ +|++.. .+...+. ...+.... ...
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~-------~~~~~~~~~~~~~ 76 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVK-------EETGKLADYPEGG 76 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHH-------hccCCcccCcccc
Confidence 69999999999999998742 22567554 454211 1111110 11110000 001
Q ss_pred ccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016620 226 RASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (386)
Q Consensus 226 ~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i 291 (386)
...++++++. +.|+|+.|+|....+...--.-....++.|.-+|...-+.+ ..-++|.++.++...
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 1247888884 67999999996543322111222444566766665444333 345678877776544
No 321
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.67 E-value=0.17 Score=48.05 Aligned_cols=191 Identities=18% Similarity=0.127 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 016620 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM------- 190 (386)
Q Consensus 122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f----g~------- 190 (386)
.+|=-+++-+|+..|-. |+.|++.+|.|+|.|.-|-.+|+.|. .. |.
T Consensus 3 GTaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~ 60 (255)
T PF03949_consen 3 GTAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARK 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHT
T ss_pred hhHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhc
Confidence 35666788888887732 35799999999999999999999874 44 65
Q ss_pred EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEEEccCCChhhhhcccHHHHhcCC
Q 016620 191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMK 263 (386)
Q Consensus 191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVvl~lPlt~~t~~li~~~~~~~mk 263 (386)
+++.+|+..- ..+..+...| .+.... .....+|+|+++.+ |+++-+-- .-+.|+++.++.|.
T Consensus 61 ~i~lvD~~Gll~~~r~~l~~~~~~~----a~~~~~---~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma 129 (255)
T PF03949_consen 61 RIWLVDSKGLLTDDREDLNPHKKPF----ARKTNP---EKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMA 129 (255)
T ss_dssp TEEEEETTEEEBTTTSSHSHHHHHH----HBSSST---TT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCH
T ss_pred cEEEEeccceEeccCccCChhhhhh----hccCcc---cccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHh
Confidence 5888886521 1111111122 111111 11125999999999 99987752 47789999999998
Q ss_pred C---CcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CCCCCCCCeEEcCCCCCCc-----HHHHHH
Q 016620 264 K---EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASAS-----KWTREG 331 (386)
Q Consensus 264 ~---gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~---~~L~~~~nvilTPHia~~t-----~~~~~~ 331 (386)
+ ..++.=.|....--|-.=.++.+-+.=....-.-..-+|.. + ...-+..|+++-|-++-.. ....+.
T Consensus 130 ~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~ 209 (255)
T PF03949_consen 130 KHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDE 209 (255)
T ss_dssp HHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HH
T ss_pred ccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHH
Confidence 7 88999998877644555555555442111111111111211 1 1234567888888665311 112255
Q ss_pred HHHHHHHHHHHHHc
Q 016620 332 MATLAALNVLGKIK 345 (386)
Q Consensus 332 ~~~~~~~ni~~~~~ 345 (386)
|...+++-|-++..
T Consensus 210 M~~aAA~aLA~~v~ 223 (255)
T PF03949_consen 210 MFLAAAEALADLVS 223 (255)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhCC
Confidence 55555565555443
No 322
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.15 Score=51.35 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=67.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh----------HHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (386)
..++|+||.|-|+|+.|+..|+.| ...|++|+++|.+... .+...-+...+.....+ .... +-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~~i-~~ 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AEYI-TN 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ceEc-cc
Confidence 359999999999999999999997 4679999999876551 00000000000000001 1112 22
Q ss_pred HHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (386)
Q Consensus 231 ~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v 277 (386)
++++ ..|||.+=| .+.+.|+.+...+++.. +++-.+-|++-
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC
Confidence 4444 468887654 45788899888888876 88888888874
No 323
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.50 E-value=0.13 Score=50.76 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=53.0
Q ss_pred eEEEEecChhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhc-------C------CCCccccccCC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKAN-------G------EQPVTWKRASS 229 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~ 229 (386)
+|||+|+|+||+.+.+.+. .. +.+|...+.....+...|.-.|++.-... + ..........+
T Consensus 1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 5899999999999999863 33 36777665433333334444443211000 0 01111111224
Q ss_pred HHHH-h--hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 230 l~el-l--~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
++++ . ..+|+|+-|.+..-. + +.....++.|+..|.++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s-~----e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGN-R----EQGERHIRAGAKRVLFS 120 (325)
T ss_pred hhhccccccCCCEEEEccchhcc-H----HHHHHHHHcCCeEEEec
Confidence 4443 2 478888888874211 1 22333456676666665
No 324
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.48 E-value=0.074 Score=54.52 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
..|++|.|+|+|.-|.++|+.| ...|++|+++|.++......... + .........-....+....+|+|+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~---~~~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----L---LLEGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----h---hccCceeecCccchhccccCCEEEE
Confidence 4499999999999999999998 58999999999765541110000 0 0011111111111256788999999
Q ss_pred ccCCChhhh----------hcccH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeccCC
Q 016620 243 HPVLDKTTY----------HLINK-ERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED 301 (386)
Q Consensus 243 ~lPlt~~t~----------~li~~-~~~~~m--k~gailIN~aRg~~vde~aL~~aL~~--------g~i~gaalDV~~~ 301 (386)
..-..+.+. .++++ +.|-+. +...+-|.-+-|+---+.-+...|++ |-|+..++|+..+
T Consensus 76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 843322221 23333 334332 22345566666886655556666654 4567788898887
Q ss_pred C
Q 016620 302 E 302 (386)
Q Consensus 302 E 302 (386)
+
T Consensus 156 ~ 156 (448)
T COG0771 156 A 156 (448)
T ss_pred c
Confidence 4
No 325
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.43 E-value=0.21 Score=50.99 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=52.4
Q ss_pred ccccCCCeEEEEec----------ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 016620 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (386)
Q Consensus 160 g~~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (386)
+.++.|++|+|+|+ .+-...+++.| ...| ++|.+|||........ ... .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~--------------~~~-~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK--------------LDG-LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh--------------ccC-ceeeC
Confidence 45689999999998 56788999998 5775 9999999975321000 000 11236
Q ss_pred CHHHHhhhCCEEEEccCC
Q 016620 229 SMDEVLREADVISLHPVL 246 (386)
Q Consensus 229 ~l~ell~~aDiVvl~lPl 246 (386)
+++|.++.||+|+++.+.
T Consensus 379 ~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 379 SLDEALATADVLVMLVDH 396 (415)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 889999999999999985
No 326
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.42 E-value=0.15 Score=48.21 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=61.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~ 225 (386)
..|.+++|+|+|+|.+|..+|+.|+ ..|. ++..+|...-.. + .++ .+...+.+++... .....
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp-~v~i~ 105 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP-HIAIE 105 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC-CCEEE
Confidence 5699999999999999999999985 5565 677887543210 0 000 0000011111110 01010
Q ss_pred ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620 226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~ 271 (386)
. ..+.+++++++|+|+.|+- +.+++..+++..... +.-+|..
T Consensus 106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~ 153 (245)
T PRK05690 106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSG 153 (245)
T ss_pred EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEe
Confidence 0 1234567899999999985 567787787765554 3345554
No 327
>PRK13529 malate dehydrogenase; Provisional
Probab=94.31 E-value=1.5 Score=46.08 Aligned_cols=208 Identities=19% Similarity=0.196 Sum_probs=127.6
Q ss_pred hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
Q Consensus 107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~ 186 (386)
+..|.+.|..- +.+|-.+++-+|+..|- .|+.+...+|.|+|.|.-|-.+|+.|..
T Consensus 261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 44688888755 45577788888888882 2357899999999999999999998753
Q ss_pred c---CCc-------EEEEEcCCh---hh--HHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhhC--CEEEEccCC
Q 016620 187 G---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL 246 (386)
Q Consensus 187 ~---fg~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiVvl~lPl 246 (386)
+ .|. +++.+|+.. .. .+..+-..|. +... ....+ ....+|.|+++.+ |+++-+-
T Consensus 317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~~~-~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S-- 390 (563)
T PRK13529 317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RKRE-ELADWDTEGDVISLLEVVRNVKPTVLIGVS-- 390 (563)
T ss_pred HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hhcc-cccccccccCCCCHHHHHhccCCCEEEEec--
Confidence 2 466 889998762 11 1222222221 1100 00000 1125899999998 9988654
Q ss_pred ChhhhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeccCCCCCCC----CCCCCCCCeE
Q 016620 247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK----PGLSEMKNAI 316 (386)
Q Consensus 247 t~~t~~li~~~~~~~mk~---gailIN~aRg~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~~----~~L~~~~nvi 316 (386)
..-+.|+++.++.|.+ ..++.=.|....--|..=.+|.+ +|+ |.+.+. .-.|... ...-+..|++
T Consensus 391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~ 465 (563)
T PRK13529 391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PFAPVEYNGKTYPIGQCNNAY 465 (563)
T ss_pred --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CCCCeeeCCeEeccCcCccee
Confidence 2247899999999987 88999888877644444444444 343 222222 1112211 1223567999
Q ss_pred EcCCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCCC
Q 016620 317 VVPHIASAS-----KWTREGMATLAALNVLGKIKGYPI 349 (386)
Q Consensus 317 lTPHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~~ 349 (386)
+-|-++-.. ....+.|...+++-|-.+..-+.+
T Consensus 466 iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l 503 (563)
T PRK13529 466 IFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKP 503 (563)
T ss_pred ecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccC
Confidence 999887522 122355666666666666554433
No 328
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.29 E-value=0.13 Score=54.30 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=56.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aDiVv 241 (386)
.++.|+|+|.+|+.+|+.| +..|.+|++.|.+++.... .++.+.. .......+.+ ++ ++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~---------~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDE---------LRERGIR-AVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHHCCCe-EEEcCCCCHHHHHhcCccccCEEE
Confidence 5689999999999999998 6789999999987654221 1111111 1111222322 21 56899999
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
++++.+.++..++-. . ..+.+...+|-
T Consensus 487 v~~~~~~~~~~iv~~-~-~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGEIVAS-A-REKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHHHHHH-H-HHHCCCCeEEE
Confidence 999987666555432 2 22344544443
No 329
>PRK06153 hypothetical protein; Provisional
Probab=94.28 E-value=0.19 Score=50.48 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=64.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--------------HH-H--HHHhhhhhhhhhcCCCCc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RL-E--KFVTAYGQFLKANGEQPV 222 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~--------------~~-~--~~~~~~~~~~~~~~~~~~ 222 (386)
..|++++|+|||+|.+|..++..|++ .|. ++..+|...-. .. . ...+...+.+..... ..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR-~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I 249 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAK-TPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GI 249 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHH-cCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eE
Confidence 36899999999999999999999864 555 78888854110 00 0 111111111111110 11
Q ss_pred ccc-ccCCH--HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620 223 TWK-RASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (386)
Q Consensus 223 ~~~-~~~~l--~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~ 276 (386)
... ...+- -+.+..+|+|+.|+.. .+++.++++.... .+.-+|++|-|-.
T Consensus 250 ~~~~~~I~~~n~~~L~~~DiV~dcvDn-~~aR~~ln~~a~~---~gIP~Id~G~~l~ 302 (393)
T PRK06153 250 VPHPEYIDEDNVDELDGFTFVFVCVDK-GSSRKLIVDYLEA---LGIPFIDVGMGLE 302 (393)
T ss_pred EEEeecCCHHHHHHhcCCCEEEEcCCC-HHHHHHHHHHHHH---cCCCEEEeeecce
Confidence 000 01111 1356889999999974 5567777776654 3566888766543
No 330
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.28 E-value=0.13 Score=50.32 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=44.0
Q ss_pred eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-C---CccccccCCHHHHhhhCCEEE
Q 016620 167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q---PVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~ell~~aDiVv 241 (386)
+|+|||.|.+|..+|-.|+. ++.-++..+|.........-.+ +..... . .... ...+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i-~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKI-RAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEE-EECC-HHHhCCCCEEE
Confidence 58999999999999987643 4444799999865432222222 111111 1 1111 1223 46789999999
Q ss_pred EccC
Q 016620 242 LHPV 245 (386)
Q Consensus 242 l~lP 245 (386)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9854
No 331
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.25 E-value=0.25 Score=48.09 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=56.5
Q ss_pred EEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEEEEc
Q 016620 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 168 vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
|+|||.|.+|..+|-.|+ ..| .++..+|.........-.+ +...... ........+ .+.+++||+|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 589999999999998774 445 5899999876432221111 1111111 111221234 4578999999999
Q ss_pred cCCChh---hh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620 244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCS 272 (386)
Q Consensus 244 lPlt~~---t~--------~li~--~~~~~~mk~gailIN~a 272 (386)
...... ++ .++. .+.+....+.+++++++
T Consensus 74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 764221 11 1111 12233345788999987
No 332
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.23 E-value=0.18 Score=53.94 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 240 (386)
..+|.|+|+|.+|+.+++.| ...|.++++.|.+++.... .++.+. +.......+.+-+ +.+||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAVNL---------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence 45799999999999999998 6889999999988754211 122221 1111122332222 5789999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+++.+..+++..+ ....+++.|...++--+|
T Consensus 469 v~~~~d~~~n~~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHH--HHHHHHHCCCCeEEEEeC
Confidence 9999976555443 233444556655555444
No 333
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.22 E-value=0.56 Score=46.62 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=66.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.+|||+|. .+|+.-++.+++.- ++++. ++|+..+. .+++.+.| + ...+.+++|++.+.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence 57999999 68999888774323 57766 46776543 23332222 2 11358999999999999999
Q ss_pred cCCC-hhhhhcccHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620 244 PVLD-KTTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (386)
Q Consensus 244 lPlt-~~t~~li~~~~~~~mk~ga-ilIN~aRg~~vde~aL~~aL~~g~i~ga 294 (386)
+|.+ +...|. +-....++.|. +|+.===. .-+.++|+++.++..+...
T Consensus 70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 9752 222221 22233344553 33332111 3566778888887655544
No 334
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.21 E-value=0.2 Score=46.37 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.6
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
+.|+++.|.|. |.||+.+++.|+ ..|.+|++.+|+..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~ 41 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA 41 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence 67899999997 999999999984 67999998887643
No 335
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.21 E-value=0.31 Score=47.52 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hCC
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD 238 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD 238 (386)
..++||||.|.||...+..+.+.-++++. ++|++......++. ++.+. . ..+.++++++. +.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~Gi---~-~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLGV---A-TSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcCC---C-cccCCHHHHHhCcCCCCCC
Confidence 35799999999999977665444466655 55665543211111 11121 1 12367888885 588
Q ss_pred EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
+|+.++|.. .|. +-.....+.|..+|+-+
T Consensus 73 iVf~AT~a~---~H~--e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 73 IVFDATSAG---AHV--RHAAKLREAGIRAIDLT 101 (302)
T ss_pred EEEECCCHH---HHH--HHHHHHHHcCCeEEECC
Confidence 899999842 221 11222245677777665
No 336
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.16 E-value=0.22 Score=42.64 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.7
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~ 198 (386)
+|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence 5899999999999999985 6677 78889865
No 337
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.14 E-value=0.16 Score=52.94 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=67.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
+.+++|.|+|+|..|.++|+.| +..|.+|.++|.......... +...+ .+..........+.+..+|+|+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------L~~~~-~~~~~~~g~~~~~~~~~~d~vv~ 75 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA-------LRAEL-PDAEFVGGPFDPALLDGVDLVAL 75 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH-------HHhhc-CCcEEEeCCCchhHhcCCCEEEE
Confidence 5688999999999999999987 689999999997543211110 11111 01111111112355678999988
Q ss_pred c--cCCC-----hh-------hhhcccH-HHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 243 H--PVLD-----KT-------TYHLINK-ERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 243 ~--lPlt-----~~-------t~~li~~-~~~~-~m--------k~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
. +|.+ |. ...++.+ +.+. .+ ++..+-|--+-|+.--..-|...|++..
T Consensus 76 sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 76 SPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred CCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 7 3432 21 1123322 2221 12 2235666667788766666677776543
No 338
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.11 E-value=0.12 Score=48.70 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=57.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcC-CCCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANG-EQPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~-~~~~~~ 224 (386)
..|++++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-.. + .++ .+...+.+++.. ......
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4689999999999999999999985 4565 677777653221 0 000 000001111111 000000
Q ss_pred c--c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 225 ~--~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
. . ..+++++++++|+|+.|.- +.+++.++++...+
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~ 137 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA 137 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence 0 1 1235678899999998885 56788888776554
No 339
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.04 E-value=0.12 Score=51.21 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=54.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcC-CcEEEE-EcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhhCCEE
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV 240 (386)
++|+|+|. |.+|+.+++.|. .. ++++.+ .++.... ..... ++ .+ ...... ...++++ ...++|+|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~~---~~-~~--~~~~~~---~~~~~~~~~~~~vD~V 72 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSDV---HP-HL--RGLVDL---VLEPLDPEILAGADVV 72 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHHh---Cc-cc--ccccCc---eeecCCHHHhcCCCEE
Confidence 58999997 999999999884 44 677655 4532211 11110 00 00 000000 1122222 45789999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde 279 (386)
++|+|... ...+. . ...+.|..+||.|-.--.+.
T Consensus 73 f~alP~~~-~~~~v-~---~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 73 FLALPHGV-SMDLA-P---QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred EECCCcHH-HHHHH-H---HHHhCCCEEEECCcccCCCC
Confidence 99999632 12221 2 22357899999985444433
No 340
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.14 Score=52.88 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=70.0
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
+..+.+++|.|+|.|.+|.++|+.| +..|.+|.++|+.......... ..++..+ .....-.... ....+|+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~g---v~~~~~~~~~-~~~~~D~ 81 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALG---ATVRLGPGPT-LPEDTDL 81 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcC---CEEEECCCcc-ccCCCCE
Confidence 3467899999999999999999987 5799999999966432211100 1122222 1111111111 3456999
Q ss_pred EEEccCCChhhh----------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 016620 240 ISLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 240 Vvl~lPlt~~t~----------~li~~-~~~-~~mk~----gailIN~aRg~~vde~aL~~aL~~ 288 (386)
|+++.-..+.+. .++++ +.+ ..+.+ ..+-|--+.|+.--..=|...|+.
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 998864333221 13333 222 33422 246677777887666666777765
No 341
>PRK05086 malate dehydrogenase; Provisional
Probab=93.96 E-value=0.22 Score=48.79 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=58.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhhCCEE
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV 240 (386)
++|+|||. |.||+.+|..++. ..+..+..+|+..... ..-.+ +.... ....... ..++.+.++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~~~~-~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LSHIP-TAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence 58999999 9999999976633 4556888999764321 00001 00100 0011111 34667788999999
Q ss_pred EEccCCChh---hh-hcc------cHHHHhcC---CCCcEEEEcCCC
Q 016620 241 SLHPVLDKT---TY-HLI------NKERLATM---KKEAILVNCSRG 274 (386)
Q Consensus 241 vl~lPlt~~---t~-~li------~~~~~~~m---k~gailIN~aRg 274 (386)
++|.-.... ++ .++ -.+..+.| .+.+++++++-.
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 999754221 11 111 22333333 567899988653
No 342
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.19 Score=52.12 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=69.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+.+++|.|+|+|.+|.++|+.| ...|++|.++|+..... .+. +...+ ..........+.+..+|+|+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~-------l~~~g---i~~~~~~~~~~~~~~~d~vV 79 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKL-------IEVTG---VADISTAEASDQLDSFSLVV 79 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHH-------HHhcC---cEEEeCCCchhHhcCCCEEE
Confidence 47889999999999999999998 58899999999764332 111 11111 11111112234456789998
Q ss_pred Ecc---CCChhh-------hhcccHHHHh-c------C--CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 242 LHP---VLDKTT-------YHLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 242 l~l---Plt~~t-------~~li~~~~~~-~------m--k~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
... |.++.- ..++++-.+. + + +...+-|--+-|+.--..-|...|+..
T Consensus 80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 774 222321 1233333332 1 1 223556666778887777777777753
No 343
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.93 E-value=0.23 Score=45.34 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~ 199 (386)
+.|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence 5689999999999999999999985 5677 588888653
No 344
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.92 E-value=0.23 Score=44.42 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=52.5
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh---HHHHH----------HhhhhhhhhhcCCCCcccc------c
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT---RLEKF----------VTAYGQFLKANGEQPVTWK------R 226 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~------~ 226 (386)
+|+|+|+|.+|..+|+.|+ ..|. ++..+|...-. ..+++ .+.....+++... ..... .
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp-~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINP-FVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCC-CCEEEEEEeecC
Confidence 5899999999999999985 5677 58888876510 00000 0000001111100 01110 0
Q ss_pred cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
..+++++++++|+|+.|.. +.+++..++....+.
T Consensus 79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~ 112 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN 112 (174)
T ss_pred hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 1245678889999998854 567777666655553
No 345
>PLN02602 lactate dehydrogenase
Probab=93.86 E-value=0.21 Score=49.71 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=58.6
Q ss_pred CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEc
Q 016620 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~ 243 (386)
++|+|||.|.+|..+|-.|+ +++.-++..+|...........+..+ .....+ .......+.++ +++||+|+++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~----~~~~~~~~~i~~~~dy~~-~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH----AAAFLPRTKILASTDYAV-TAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHh----hhhcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence 69999999999999998763 24555899999866432222222111 111111 12211234444 8999999998
Q ss_pred cCCC--h-hhh-hcccH---------HHHhcCCCCcEEEEcC
Q 016620 244 PVLD--K-TTY-HLINK---------ERLATMKKEAILVNCS 272 (386)
Q Consensus 244 lPlt--~-~t~-~li~~---------~~~~~mk~gailIN~a 272 (386)
.-.. + +|+ .++.. +.+....+.+++|+++
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5432 1 233 22211 2333346788998887
No 346
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.83 E-value=0.079 Score=53.11 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=31.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 37899999999999999985 7899999999987643
No 347
>PLN02527 aspartate carbamoyltransferase
Probab=93.75 E-value=0.36 Score=47.17 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=49.0
Q ss_pred cCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 163 l~g~~vgIvG~G---~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
+.|.+|+++|-+ ++..+.+..+ ..| |++|.+..|..-...+.+.+ ..+.. +..+....++++.+++||
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~---g~~~~~~~d~~~a~~~aD 220 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSK---GVEWEESSDLMEVASKCD 220 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHc---CCEEEEEcCHHHHhCCCC
Confidence 789999999975 6788888876 356 99999888754211111111 01111 122334578999999999
Q ss_pred EEEEcc
Q 016620 239 VISLHP 244 (386)
Q Consensus 239 iVvl~l 244 (386)
+|....
T Consensus 221 vvyt~~ 226 (306)
T PLN02527 221 VLYQTR 226 (306)
T ss_pred EEEECC
Confidence 998843
No 348
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.71 E-value=2.4 Score=44.55 Aligned_cols=204 Identities=17% Similarity=0.125 Sum_probs=122.5
Q ss_pred CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh-
Q 016620 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE- 186 (386)
Q Consensus 108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~- 186 (386)
..|.+.|..- +.+|-.+++-+|+..|-. |+.|...+|.|+|.|.-|-.+|+.|..
T Consensus 264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 264 NKYRCFNDDI---QGTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred cCCCEecccc---hhHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence 4588888654 456777888889888822 356899999999999999999998742
Q ss_pred --cCCc-------EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEEEccCCChh
Q 016620 187 --GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT 249 (386)
Q Consensus 187 --~fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVvl~lPlt~~ 249 (386)
..|. +++.+|+..- .+ +..+-..|. +...... .....+|.|+++.+ |+++-+--
T Consensus 320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S~---- 390 (559)
T PTZ00317 320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLSG---- 390 (559)
T ss_pred HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEecC----
Confidence 2466 7898886521 00 111111111 1000000 00135899999999 99886542
Q ss_pred hhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCCc-ceEEeeccCCCCCCC----CCCCCCCCeEEcC
Q 016620 250 TYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNPM-FRVGLDVFEDEPYMK----PGLSEMKNAIVVP 319 (386)
Q Consensus 250 t~~li~~~~~~~mk~---gailIN~aRg~~vde~aL~~aL~--~g~i-~gaalDV~~~EP~~~----~~L~~~~nvilTP 319 (386)
.-+.|+++.++.|.+ ..++.=.|...---|..=.+|.+ +|+. .+.+. .-+|... ...-+..|+++-|
T Consensus 391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iFP 467 (559)
T PTZ00317 391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS---PFPPVTLNGKTIQPSQGNNLYVFP 467 (559)
T ss_pred CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC---CCCCcccCCeeeccCcCcceeecc
Confidence 247899999999974 88998888866433333333443 3432 22221 1112211 1123567999999
Q ss_pred CCCCCc-----HHHHHHHHHHHHHHHHHHHcCC
Q 016620 320 HIASAS-----KWTREGMATLAALNVLGKIKGY 347 (386)
Q Consensus 320 Hia~~t-----~~~~~~~~~~~~~ni~~~~~g~ 347 (386)
-++-.. ....+.|...+++-|-.+..-+
T Consensus 468 GiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 500 (559)
T PTZ00317 468 GVGLGCAIAQPSYIPDEMLIAAAASLATLVSEE 500 (559)
T ss_pred chhhhhHhhcccCCCHHHHHHHHHHHHhhCCcc
Confidence 876422 1223455555666666655443
No 349
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.17 Score=52.35 Aligned_cols=116 Identities=20% Similarity=0.197 Sum_probs=69.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
+.|++|+|+|+|.-|.+.|+.| ...|++|+++|.......+... .++..+. ......+ ++.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~---~~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL---LVETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence 5688999999999999999998 6899999999965432211100 0111110 0111112 355678999988
Q ss_pred ccCCChhh----------hhcccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 243 HPVLDKTT----------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 243 ~lPlt~~t----------~~li~~~~~--~~-mk-----~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
..-..+.. ..++++-.| .. ++ ...+-|--+.|+.--..-|...|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 75332221 124554433 33 32 2456677778887766677777764
No 350
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.68 E-value=0.24 Score=46.79 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (386)
Q Consensus 177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~ 256 (386)
|..+|-.++ ..|.+|+..+|+..--.+..++ ....+| +...++-.+..+++.+.++.+|....|-.+. +
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence 667887775 5799999999987654333222 223333 3334556688999999999999988888765 7
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (386)
Q Consensus 257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~ 287 (386)
+.+..++.|+++.|++.-+.+ .|+..|+
T Consensus 102 ei~~hvpEgAVicnTCT~sp~---vLy~~LE 129 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPV---VLYYSLE 129 (340)
T ss_pred HHHhhCcCCcEecccccCchh---HHHHHhh
Confidence 789999999999999986653 4666663
No 351
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.68 E-value=0.24 Score=48.45 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=50.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
-+|+|+|. |-.|.++.++|+.--.+++.....+... ...+.+++++++|++++|+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCL 57 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECC
Confidence 37999987 9999999999854445666655432110 0124567778999999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
|.. .+..+. ... .+.|+.+||.|
T Consensus 58 p~~-~s~~~~-~~~---~~~g~~VIDlS 80 (310)
T TIGR01851 58 PDD-AAREAV-SLV---DNPNTCIIDAS 80 (310)
T ss_pred CHH-HHHHHH-HHH---HhCCCEEEECC
Confidence 953 223322 111 24677888887
No 352
>PRK10206 putative oxidoreductase; Provisional
Probab=93.67 E-value=0.49 Score=46.89 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=42.2
Q ss_pred eEEEEecChhHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (386)
Q Consensus 167 ~vgIvG~G~IG~~-iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv 241 (386)
++||||+|.|++. .+..+... -++++. ++|++.... ++.+.| + ....+.+++++++ +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence 6999999998864 24433222 357775 578765332 211111 1 0123578999996 579999
Q ss_pred EccCCC
Q 016620 242 LHPVLD 247 (386)
Q Consensus 242 l~lPlt 247 (386)
+|+|..
T Consensus 70 I~tp~~ 75 (344)
T PRK10206 70 VCTHAD 75 (344)
T ss_pred EeCCch
Confidence 999964
No 353
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.63 E-value=0.28 Score=46.50 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.6
Q ss_pred cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 163 l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
+.|+++.|.|.+ .||+++|+.|+ .-|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 789999999997 59999999985 679999988775
No 354
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.62 E-value=0.29 Score=52.60 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhhCCEE
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI 240 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV 240 (386)
..+|-|+|+|++|+.+|+.| +..|.++++.|.+++.... .++.+. ........+.+- -+.++|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIET---------LRKFGM-KVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46799999999999999998 6789999999987754211 122221 111112233322 25689999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN 270 (386)
+++++.++.+..+ ....+.+.|...++-
T Consensus 469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQL--VELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence 9999865554443 233444445544443
No 355
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.61 E-value=0.26 Score=50.76 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=71.7
Q ss_pred cCCCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~-iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
..+++|.|+|+|..|.+ +|+.| +..|.+|.++|......... +...+ .......+ .+.+..+|+|+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~g---i~~~~~~~-~~~~~~~d~vv 71 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELG---AIIFIGHD-AENIKDADVVV 71 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCC---CEEeCCCC-HHHCCCCCEEE
Confidence 56789999999999999 79987 68999999999765432211 11112 11111112 34566899998
Q ss_pred EccCCChhhh----------hcccHH-HHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 242 LHPVLDKTTY----------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 242 l~lPlt~~t~----------~li~~~-~~~~-mk-~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
...-..+... .++++- .+.. ++ ...+-|--+.|+.--..-+...|+...
T Consensus 72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 8753322211 245443 3333 33 345667778899877777777777543
No 356
>PRK08328 hypothetical protein; Provisional
Probab=93.61 E-value=0.25 Score=46.27 Aligned_cols=107 Identities=24% Similarity=0.259 Sum_probs=61.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHHH---hhhh---------hhhhhcCCCCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKFV---TAYG---------QFLKANGEQPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~~---~~~~---------~~~~~~~~~~~~~ 224 (386)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. + .++. +..+ ..+++.. .....
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n-p~v~v 100 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN-SDIKI 100 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhC-CCCEE
Confidence 4689999999999999999999985 5666 688888543210 0 0000 0000 0011100 00111
Q ss_pred c------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 225 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 225 ~------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
. ...+++++++++|+|+.|+-. .+++.++++-.. +.+.-+|+.+-
T Consensus 101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~---~~~ip~i~g~~ 151 (231)
T PRK08328 101 ETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAH---KKGIPLVHGAV 151 (231)
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHH---HcCCCEEEEee
Confidence 0 113456778899999988864 567777765433 23455665443
No 357
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=93.61 E-value=0.41 Score=47.04 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHh------cCCcEE--EEEcCChhhHHHHHHhhhh---hhh--hhcCCCCccccccCCH
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYG---QFL--KANGEQPVTWKRASSM 230 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~------~fg~~V--~~~d~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~l 230 (386)
.-.+|+|||.|+=|..+|+.++. .|..+| ++++-....+.+...+... +.. -+.-..|.......++
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 44689999999999999998642 234444 4443322221011111000 000 0111233334446789
Q ss_pred HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
.+++.+||+++..+|. +-..-|.++...+.|+++..|...-|
T Consensus 100 ~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecc
Confidence 9999999999999996 33444568888899999999888766
No 358
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.59 E-value=0.26 Score=49.55 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=59.5
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~ 225 (386)
..|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...-.. + ++ ..+...+.+++... ...+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np-~v~i~ 114 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP-DIRVN 114 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC-CCeeE
Confidence 5699999999999999999999985 6676 788888652110 0 00 00000111111110 01111
Q ss_pred ------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 226 ------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
...+.+++++++|+|+.|+- +.+++.++++....
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 11345678999999988875 56788888776544
No 359
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.56 E-value=0.2 Score=40.04 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=40.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl 242 (386)
.+++|+|+|+.|++++..+.+..|++ +.++|.++...- +... +...+.+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-----------~~i~----gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-----------KEIG----GIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-----------SEET----TEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-----------cEEC----CEEeeccHHHhhhhhCCCEEEE
Confidence 46999999999999885443344543 345565443210 0001 11123477777776 999999
Q ss_pred ccCC
Q 016620 243 HPVL 246 (386)
Q Consensus 243 ~lPl 246 (386)
++|.
T Consensus 69 ~VP~ 72 (96)
T PF02629_consen 69 TVPA 72 (96)
T ss_dssp ES-H
T ss_pred EcCH
Confidence 9994
No 360
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.54 Score=48.34 Aligned_cols=113 Identities=22% Similarity=0.233 Sum_probs=68.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
.+.|++|.|+|+|.+|.++|+.| +..|.+|.++|....... . +...+.. .... . .+-+..+|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~-~~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-R-TADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-C-hhHHcCCCEEE
Confidence 37789999999999999999987 689999999997643221 1 1111211 1111 1 12356799988
Q ss_pred Ecc--CCC-h----h---hhh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 242 LHP--VLD-K----T---TYH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 242 l~l--Plt-~----~---t~~----li~~-~~~~~-m-----k~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
... |.+ + . ++. ++.+ +.+.+ + +...+-|.-+.|+.--..-|...|+..
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 654 221 1 1 111 1332 22222 2 345667888889987777777777753
No 361
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.48 E-value=0.52 Score=48.22 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=61.8
Q ss_pred ccccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
Q Consensus 160 g~~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (386)
+..+.|++|+|+|+ .+-+..+++.| ...|.+|.+|||........ +..+ ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~---------~~~~--------~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR---------REYG--------IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH---------HhcC--------ccc
Confidence 35689999999999 57788999998 67899999999974321100 0000 011
Q ss_pred HH-HHhhhCCEEEEccCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016620 230 MD-EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (386)
Q Consensus 230 l~-ell~~aDiVvl~lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~~ 276 (386)
++ ..++.||.|+++..- ++-. -++-+.+. .|+...+++| +|+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~h-~~f~-~~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVGH-QQFK-QMGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccCC-HHhh-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence 21 236789999999985 3323 34544444 4554458888 46544
No 362
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.44 E-value=4.8 Score=39.91 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=48.0
Q ss_pred c-CCCeEEEEecC-------hhHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (386)
Q Consensus 163 l-~g~~vgIvG~G-------~IG~~iA~~L~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (386)
+ .|.+|+|+|.| ++..+++..+ ..||++|.+..| ..-...+.+.+.-.+..+..+ ..+....+++|.
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea 241 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA 241 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 6 78999887654 6778888876 579999999998 321111111110000011111 223345799999
Q ss_pred hhhCCEEEEccC
Q 016620 234 LREADVISLHPV 245 (386)
Q Consensus 234 l~~aDiVvl~lP 245 (386)
++++|+|..-.-
T Consensus 242 ~~~aDvvy~~~w 253 (335)
T PRK04523 242 YAGADVVYAKSW 253 (335)
T ss_pred hCCCCEEEecee
Confidence 999999987543
No 363
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.38 E-value=0.29 Score=47.77 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=45.3
Q ss_pred CeEEEEecChhHHH-HHHHHHhcCC--cE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCE
Q 016620 166 QTVGVIGAGRIGSA-YARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (386)
Q Consensus 166 ~~vgIvG~G~IG~~-iA~~L~~~fg--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 239 (386)
.+|||||+|.+++. .+..+ +..+ +. |.++|++... .+.+.+.| +.. ..+.+++++++. .|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence 47999999987754 66665 4554 34 5566887754 22222222 211 246799999986 589
Q ss_pred EEEccCCC
Q 016620 240 ISLHPVLD 247 (386)
Q Consensus 240 Vvl~lPlt 247 (386)
|++|+|..
T Consensus 71 V~Iatp~~ 78 (342)
T COG0673 71 VYIATPNA 78 (342)
T ss_pred EEEcCCCh
Confidence 99999963
No 364
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.37 Score=44.35 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=30.3
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~ 199 (386)
.+.++++.|.|. |.||+.+|+.|+ ..|++|+...++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCC
Confidence 367899999985 999999999984 6799988776544
No 365
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.36 E-value=6.2 Score=38.68 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=49.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.|++|+++|- +++..+++..+ ..||++|.+..|..-. +...+..-+.....+ ......++++.++++|+|
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv 222 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV 222 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence 478999999997 78899988887 5799999999885421 110000000011111 122347899999999999
Q ss_pred EEcc
Q 016620 241 SLHP 244 (386)
Q Consensus 241 vl~l 244 (386)
..-.
T Consensus 223 y~d~ 226 (311)
T PRK14804 223 YTDT 226 (311)
T ss_pred Eeee
Confidence 8743
No 366
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.31 E-value=0.53 Score=45.55 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=43.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl 242 (386)
.+|||||.|.||+..+..+.+.-++++. ++|+++......+. ++.+. . ....+.+++++ +.|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi---~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGV---K-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence 3799999999999887655343456655 45665543211111 11111 1 12357888875 5788999
Q ss_pred ccCCC
Q 016620 243 HPVLD 247 (386)
Q Consensus 243 ~lPlt 247 (386)
++|..
T Consensus 71 aTp~~ 75 (285)
T TIGR03215 71 ATSAK 75 (285)
T ss_pred CCCcH
Confidence 99953
No 367
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.29 E-value=0.1 Score=45.98 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=47.3
Q ss_pred EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCCEEEEcc
Q 016620 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 168 vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiVvl~l 244 (386)
|.|+|. |.+|+.+++.| ..-|.+|++..|++.+... . .+... .......++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~---~--------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED---S--------PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH---C--------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc---c--------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 678995 99999999998 5788999999998765321 0 00000 00111234567788999999999
Q ss_pred CCChh
Q 016620 245 VLDKT 249 (386)
Q Consensus 245 Plt~~ 249 (386)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 75443
No 368
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.16 E-value=0.2 Score=49.05 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=31.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAY 210 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~ 210 (386)
.+|||=|||+||+.+++.+...- .++|.+.+........++...|
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llky 47 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKY 47 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhh
Confidence 37999999999999999874333 4999988763333333343333
No 369
>PRK08223 hypothetical protein; Validated
Probab=93.13 E-value=0.38 Score=46.57 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=57.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCC-CCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGE-QPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~-~~~~~ 224 (386)
..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. + +++ .+...+.+++... .....
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 4589999999999999999999986 5565 677777542210 0 000 0000111111110 00100
Q ss_pred ----cccCCHHHHhhhCCEEEEccCCC-hhhhhcccHHHHh
Q 016620 225 ----KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLA 260 (386)
Q Consensus 225 ----~~~~~l~ell~~aDiVvl~lPlt-~~t~~li~~~~~~ 260 (386)
....+.+++++++|+|+-++..- -+++.++++....
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~ 142 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ 142 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 01245678899999998777532 2677888776554
No 370
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.10 E-value=0.26 Score=47.37 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.1
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
..+.|+++.|.|. |.||..+|+.|+ ..|++|+.++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 4688999999986 889999999985 67999999987653
No 371
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.08 E-value=3 Score=44.10 Aligned_cols=202 Identities=19% Similarity=0.152 Sum_probs=123.0
Q ss_pred hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
Q Consensus 107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~ 186 (386)
+..|.+.|..- +.+|-.+++-+|+..|-. |+.|...+|.|+|.|.-|-.+|+.|..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence 45788888755 455777888888888822 357999999999999999999998753
Q ss_pred c----CCc-------EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEEccCCC
Q 016620 187 G----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD 247 (386)
Q Consensus 187 ~----fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl~lPlt 247 (386)
. .|. +++.+|+..- .+ +..+-..|. +. . ....+|+|+++. .|+++-+--
T Consensus 343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~-~------~~~~~L~e~v~~vkptvLIG~S~-- 410 (581)
T PLN03129 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HD-H------EPGASLLEAVKAIKPTVLIGLSG-- 410 (581)
T ss_pred HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hh-c------ccCCCHHHHHhccCCCEEEEecC--
Confidence 2 355 7888886531 00 111111111 11 0 123689999998 899887652
Q ss_pred hhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH--cCCcceEEeeccCCCCCC-C---CCCCCCCCeEEc
Q 016620 248 KTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK--QNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVV 318 (386)
Q Consensus 248 ~~t~~li~~~~~~~mk---~gailIN~aRg~~vde~aL~~aL~--~g~i~gaalDV~~~EP~~-~---~~L~~~~nvilT 318 (386)
.-+.|+++.++.|. +..++.=.|...---|..=.+|.+ +|+...|.= ..-.|.. + ...-+..|+++-
T Consensus 411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtG--SPf~pv~~~Gr~~~p~Q~NN~~iF 486 (581)
T PLN03129 411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG--SPFDPVEYNGKTFHPGQANNAYIF 486 (581)
T ss_pred --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeC--CCCCCeeeCCeeecCccccceeec
Confidence 24789999999995 778888887765322222223333 254222211 1111111 1 112356799999
Q ss_pred CCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCC
Q 016620 319 PHIASAS-----KWTREGMATLAALNVLGKIKGYP 348 (386)
Q Consensus 319 PHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~ 348 (386)
|-++-.. ....+.|...+++-|-.+..-+.
T Consensus 487 PGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~ 521 (581)
T PLN03129 487 PGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE 521 (581)
T ss_pred cchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCccc
Confidence 9886522 12235566666666666655444
No 372
>PRK04148 hypothetical protein; Provisional
Probab=93.01 E-value=0.39 Score=41.11 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
+++++.+||+| -|..+|+.| +..|.+|++.|.++...... +..+..-....-...-.++.+.+|+|-..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~~a---------~~~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAVEKA---------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 56789999999 999999998 57899999999887642111 11111111111112234677888888766
Q ss_pred cCC
Q 016620 244 PVL 246 (386)
Q Consensus 244 lPl 246 (386)
=|-
T Consensus 85 rpp 87 (134)
T PRK04148 85 RPP 87 (134)
T ss_pred CCC
Confidence 663
No 373
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.98 E-value=0.35 Score=49.49 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=69.9
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
+.++++.|+|.|.+|.++|+.| ...|.+|.++|.......... ++.. ..+........-++.+..+|+|+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILAL 73 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEEE
Confidence 5688999999999999999997 589999999997654311110 1110 011111111112344578999988
Q ss_pred ccCCChhhh----------hcccH-HHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 243 HPVLDKTTY----------HLINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 243 ~lPlt~~t~----------~li~~-~~~~~-mk---~gailIN~aRg~~vde~aL~~aL~~g 289 (386)
..-..++.. .++.+ +.+.. ++ ...+-|--+.|+.--..-+...|+..
T Consensus 74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 754433221 13333 23333 32 24566777778876667777777653
No 374
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.96 E-value=0.38 Score=47.14 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=59.0
Q ss_pred eEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhhCCEEE
Q 016620 167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiVv 241 (386)
+|+|+|. |.+|..+|-.|+. .+.-++..+|..... ..-.+ +.. ......... ..++.+.++.||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 9999999987643 444589999986511 11011 111 111111221 123568899999999
Q ss_pred EccCCC--h-hhh--------hccc--HHHHhcCCCCcEEEEcCCCcccCH
Q 016620 242 LHPVLD--K-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDE 279 (386)
Q Consensus 242 l~lPlt--~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vde 279 (386)
++.-.. + .++ .++. .+.+..-.+.+++++++- ++|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 886532 1 122 1111 123333468899999865 4443
No 375
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.96 E-value=0.37 Score=41.90 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=51.0
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
...|++|++||+= ++++++| +.-+.+++++|+++...... . . .......++++.+||+|+
T Consensus 8 ~~~~~~V~~VG~f---~P~~~~l-~~~~~~v~v~d~~~~~~~~~--------------~-~-~~~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 8 IGPGDKVGMVGYF---QPLVEKL-KERGAEVRVFDLNPDNIGEE--------------P-G-DVPDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS--------------C-T--EEGGGHHHHGGG-SEEE
T ss_pred hcCCCEEEEEcCc---HHHHHHH-hcCCCCEEEEECCCCCCCCC--------------C-C-cCCHHHHHHHHccCCEEE
Confidence 3578999999971 2367776 56789999999987542110 0 0 012346688999999998
Q ss_pred EccCCChhhhhccc---HHHHhcCCCCcEEEEc
Q 016620 242 LHPVLDKTTYHLIN---KERLATMKKEAILVNC 271 (386)
Q Consensus 242 l~lPlt~~t~~li~---~~~~~~mk~gailIN~ 271 (386)
+.-- -++| ++.+++.+++..++=+
T Consensus 68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 68 ITGS------TLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp EECH------HCCTTTHHHHHHHTTTSSEEEEE
T ss_pred EEee------eeecCCHHHHHHhCccCCeEEEE
Confidence 7641 2222 4566667756555443
No 376
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.93 E-value=0.3 Score=45.09 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
++.++++.|+|. |.||+++++.|+ ..|++|++.+|+...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 367899999986 899999999984 679999999998643
No 377
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.84 E-value=0.6 Score=45.97 Aligned_cols=76 Identities=20% Similarity=0.096 Sum_probs=43.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (386)
++|+|+|. |.+|..+|-.|.. ++-- ++..+|..... ....-.+ +.... ..........+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence 48999999 9999999987642 3322 78999984322 1111011 01110 00001111235567789
Q ss_pred hCCEEEEccCC
Q 016620 236 EADVISLHPVL 246 (386)
Q Consensus 236 ~aDiVvl~lPl 246 (386)
+||+|+++.-.
T Consensus 78 daDivvitaG~ 88 (322)
T cd01338 78 DADWALLVGAK 88 (322)
T ss_pred CCCEEEEeCCC
Confidence 99999998643
No 378
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.79 E-value=0.35 Score=45.41 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=33.1
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 478899999987 999999999985 68999999998764
No 379
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=92.77 E-value=0.3 Score=47.32 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=67.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-hhcCC-CCcccccc----------C
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-KANGE-QPVTWKRA----------S 228 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~----------~ 228 (386)
-...+.++-++|+|-+|-..+-. +.-.|+-|..+|-+.... +..+..+... +...+ ...++.+. .
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~K--eqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKK--EQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHh--hhhhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence 34677888999999999998876 466788888888654331 1111111000 00000 00111111 1
Q ss_pred CHHHHhhhCCEEEEc--cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 229 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 229 ~l~ell~~aDiVvl~--lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
-+.|.+++.|||+.. .|..|. -.|+.++....||||+++||.+
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 234567899999775 566544 6688999999999999999973
No 380
>PRK06392 homoserine dehydrogenase; Provisional
Probab=92.71 E-value=0.38 Score=47.50 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=62.3
Q ss_pred eEEEEecChhHHHHHHHHHh-------cCCcEEEEE-cCChhhHHHHHH--hhhhhhhhhcCCCCccccccCCHHHHh-h
Q 016620 167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYY-DLYQATRLEKFV--TAYGQFLKANGEQPVTWKRASSMDEVL-R 235 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~-------~fg~~V~~~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ell-~ 235 (386)
+|+|+|+|.+|+.+++.|.+ +++.+|.+. |++..-..+.-. +..-+..+. +..........++++++ .
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhcC
Confidence 79999999999999998743 267776544 543211000000 000000000 10000000011456654 4
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN 289 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v-de~aL~~aL~~g 289 (386)
++|+|+=|.|...+...-. .-....++.|.-+|-..-|.+. .-+.|.++.+++
T Consensus 81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 6899999998532111111 1223445677777777766663 456677766654
No 381
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.33 Score=45.75 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=34.3
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.++.|+++.|.|. |.||+.+++.|+ ..|++|+..+|+...
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~-~~G~~V~~~~r~~~~ 45 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFA-RAGANVAVASRSQEK 45 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 3588999999988 899999999984 789999999987543
No 382
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.67 E-value=0.66 Score=47.47 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=59.6
Q ss_pred CeEEEEecChhHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~---------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 235 (386)
.+|||+|+|.||+.+++.|.+. .+.++. ++|++..... +..........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------------~~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------------GVDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------------CCCCcccceeCCHHHHhh
Confidence 4799999999999998876321 245644 4566543210 000011123468899985
Q ss_pred --hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016620 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (386)
Q Consensus 236 --~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i 291 (386)
+.|+|+.+++.......+ ....++.|.-+|...-+.+ -.-+.|.++.++...
T Consensus 70 d~~iDvVve~tg~~~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 469999998753222221 2233455544443222222 233677777776554
No 383
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.57 E-value=0.36 Score=48.19 Aligned_cols=97 Identities=26% Similarity=0.209 Sum_probs=57.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~ 225 (386)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-.. + +++ .+...+.+++... .....
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-~v~v~ 101 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP-DVKVT 101 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC-CcEEE
Confidence 5689999999999999999999985 5666 688887653110 0 000 0000011111110 01111
Q ss_pred ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620 226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (386)
Q Consensus 226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~ 260 (386)
. ..+..++++.+|+|+.|+- +.+++.+++....+
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~ 141 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR 141 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 0 1234578899999999885 46778777765544
No 384
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.56 E-value=0.55 Score=46.29 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=57.2
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhhCC
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD 238 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD 238 (386)
..|.+|.|+|.|.||...++.+ +..|++|++.+++. ..+.+ . +++.+..... ....++.+ .....|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~-------~~~~Ga~~v~-~~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-I-------VEELGATYVN-SSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-H-------HHHcCCEEec-CCccchhhhhhcCCCC
Confidence 3688999999999999999875 78999999998742 11111 1 1112221110 00111111 123578
Q ss_pred EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+|+-++... . . -.+.++.++++..++.++.
T Consensus 241 ~vid~~g~~-~---~-~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEATGVP-P---L-AFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEECcCCH-H---H-HHHHHHHccCCcEEEEEec
Confidence 888887531 1 1 2456777888887777654
No 385
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=92.51 E-value=1.9 Score=42.02 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=50.1
Q ss_pred cCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 163 l~g~~vgIvG---~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
+.|.+|+|+| +|+..++.++.| +.||++|..+.|..-...+...+. +...+ ..+......+|.+.++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence 8999999999 799999999998 689999999988543211111111 11111 123345566779999999
Q ss_pred EEEc
Q 016620 240 ISLH 243 (386)
Q Consensus 240 Vvl~ 243 (386)
+.+.
T Consensus 228 l~~l 231 (316)
T COG0540 228 LYML 231 (316)
T ss_pred EEee
Confidence 9543
No 386
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=92.49 E-value=0.73 Score=45.71 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=49.3
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
.+.|.+|+++|= +++..+.+..++.-+|++|.+..|..-...+.+.+. ++.. +..+....+++|.+++||
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence 589999999998 477888887654345999999887532111111111 1111 122334579999999999
Q ss_pred EEEEc
Q 016620 239 VISLH 243 (386)
Q Consensus 239 iVvl~ 243 (386)
+|..-
T Consensus 229 vvyt~ 233 (338)
T PRK08192 229 ILYLT 233 (338)
T ss_pred EEEEc
Confidence 99884
No 387
>PRK06128 oxidoreductase; Provisional
Probab=92.41 E-value=0.45 Score=45.84 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.3
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
.+.||++.|.|. |.||+++|+.|+ ..|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 378999999986 999999999985 679998876544
No 388
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.39 E-value=0.65 Score=45.27 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~ 201 (386)
.|.+|.|+|.|.+|...++.+ +.+|++ |++.+++...
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~ 200 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence 489999999999999999985 789999 9998876543
No 389
>PRK15076 alpha-galactosidase; Provisional
Probab=92.37 E-value=0.49 Score=48.51 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred CeEEEEecChhHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~--~L~--~~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
.+|+|||.|++|...+- .++ +++ +.+|..+|....... ..... ......+ .........++.+.++.||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~---~~~~~~~-~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR---KLAESLG-ASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH---HHHHhcC-CCeEEEEECCHHHHhCCCC
Confidence 47999999999955433 222 344 458999998765422 11111 1111111 2233444578889999999
Q ss_pred EEEEccCC
Q 016620 239 VISLHPVL 246 (386)
Q Consensus 239 iVvl~lPl 246 (386)
+|+++.-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99988654
No 390
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.37 E-value=0.57 Score=45.83 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=77.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP 245 (386)
++|.|+|.|.||.-++-+|+ ..|..|+.+-|... .+++-.. +=.+...............-.+.+..+|+|++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 47999999999999999985 56777887776553 1111110 00001111100001112233455678999999986
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc-ceEEeeccCCC-CCCCCCCCCCCCeEEcCCCCC
Q 016620 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM-FRVGLDVFEDE-PYMKPGLSEMKNAIVVPHIAS 323 (386)
Q Consensus 246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i-~gaalDV~~~E-P~~~~~L~~~~nvilTPHia~ 323 (386)
.. ++...+ +......++.++++-.--| +=+++.+-+.....++ .|...=....+ |- .-.......+.+.+..++
T Consensus 77 a~-q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g-~v~~~g~g~~~ig~~~~~ 152 (307)
T COG1893 77 AY-QLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLGGVTTHGAVREGPG-HVVHTGLGDTVIGELRGG 152 (307)
T ss_pred cc-cHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEEEEeeeeeEecCCc-eEEEecCCcEEEccCCCC
Confidence 43 333332 4556667788766633222 2233455555544322 22222111112 21 111233556777777665
Q ss_pred Cc
Q 016620 324 AS 325 (386)
Q Consensus 324 ~t 325 (386)
.+
T Consensus 153 ~~ 154 (307)
T COG1893 153 RD 154 (307)
T ss_pred ch
Confidence 54
No 391
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.36 E-value=0.22 Score=43.52 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=31.5
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhh
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAY 210 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~ 210 (386)
+|||-|||+||+.+++.+...-.++|.+.+ +....+...+.-.|
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~Llky 46 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKY 46 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhc
Confidence 799999999999999987656778887774 44244444444334
No 392
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.35 E-value=0.3 Score=48.13 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=46.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~ 236 (386)
-++.++|+|+|. |.||..+|..|+. +..-++..+|..... ..-.+ +..... ....... .+..+.++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 356779999999 9999999988731 455689999983211 00001 111111 1112111 223678999
Q ss_pred CCEEEEccCC
Q 016620 237 ADVISLHPVL 246 (386)
Q Consensus 237 aDiVvl~lPl 246 (386)
||+|++++-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999988654
No 393
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.33 E-value=0.58 Score=45.85 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=57.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhhCCEE
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDiV 240 (386)
++|+|||. |.+|..+|-.|+. +.--++..+|.. ... ....+ +.... ....... . +++.+.+++||+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCEE
Confidence 47999999 9999999987642 333479999986 211 11111 11111 1111221 1 3456778999999
Q ss_pred EEccCC--Ch-hhhh-cc--cH-------HHHhcCCCCcEEEEcCC
Q 016620 241 SLHPVL--DK-TTYH-LI--NK-------ERLATMKKEAILVNCSR 273 (386)
Q Consensus 241 vl~lPl--t~-~t~~-li--~~-------~~~~~mk~gailIN~aR 273 (386)
+++.-. .+ +++. ++ |. +.+..-.+.+++|+++-
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 988543 22 2221 21 11 23334468899999876
No 394
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.29 E-value=0.43 Score=46.78 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=48.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
.+|+|+|. |-.|+.+.++|..--..++.....+... . ..+.++.++++|+|++|+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------------~------~~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------------D------AAARRELLNAADVAILCL 58 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------------c------ccCchhhhcCCCEEEECC
Confidence 47999995 9999999999843223455544322111 0 023345667899999999
Q ss_pred CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 245 VLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 245 Plt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
|.. ....+. .+. .+.|+.+||.|
T Consensus 59 p~~-~s~~~~-~~~---~~~g~~VIDlS 81 (313)
T PRK11863 59 PDD-AAREAV-ALI---DNPATRVIDAS 81 (313)
T ss_pred CHH-HHHHHH-HHH---HhCCCEEEECC
Confidence 953 222221 211 24688888887
No 395
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.22 E-value=0.26 Score=40.61 Aligned_cols=98 Identities=12% Similarity=0.186 Sum_probs=55.1
Q ss_pred ecChhHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEc
Q 016620 172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (386)
Q Consensus 172 G~G~IG~~iA~~L~~~---fg~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~ 243 (386)
|+|.||+.+++.|.+. +++++. +++++ ......... .......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999988432 267755 44665 111111000 00123578999988 89999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHc
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQ 288 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v---de~aL~~aL~~ 288 (386)
.+..+.+ +-....++.|.-+|-.+-+.+. .-+.|.++.++
T Consensus 67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 6643222 2234446688888888888877 33444444444
No 396
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.21 E-value=0.49 Score=44.50 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=29.2
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcC
Q 016620 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL 197 (386)
Q Consensus 162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~ 197 (386)
++.||++.|.|. +.||+++|+.|+ ..|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence 368999999997 489999999985 68999876643
No 397
>PLN00106 malate dehydrogenase
Probab=92.19 E-value=0.31 Score=48.03 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Cccc-cccCCHHHHhhhCCE
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV 239 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi 239 (386)
..++|+|+|. |.+|..+|..|+. ...-++..+|..... ....+ +...... .... ....++.+.+++||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~--g~a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP--GVAAD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC--eeEch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 4469999999 9999999998742 444489999986511 00001 0111111 1111 123456788999999
Q ss_pred EEEccCC--Ch-hhhh-cc------cHH---HHhcCCCCcEEEEcCCCc
Q 016620 240 ISLHPVL--DK-TTYH-LI------NKE---RLATMKKEAILVNCSRGP 275 (386)
Q Consensus 240 Vvl~lPl--t~-~t~~-li------~~~---~~~~mk~gailIN~aRg~ 275 (386)
|+++.-. .+ .++. ++ -.+ .+....+.+++++++-.-
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 9888543 21 1221 11 112 233345788999987643
No 398
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.14 E-value=1 Score=46.45 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=70.5
Q ss_pred cCCCeEEEEec----ChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 163 l~g~~vgIvG~----G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
++=++|.|||. |.+|..+.+.| +..|+ +|+.++|.... .. +...+.+++++-..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i~--G~~~~~sl~~lp~~ 64 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------IL--GVKAYPSVLEIPDP 64 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------cC--CccccCCHHHCCCC
Confidence 55678999999 88999999987 45554 89988886432 11 12235688898888
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCcceE
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRV 294 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~-gailIN~aRg~~-----vde~aL~~aL~~g~i~ga 294 (386)
.|++++++|. +.+...+ ++..+ .+- .++++..+-++. -.++.|.+..+++.+.-.
T Consensus 65 ~Dlavi~vp~-~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 65 VDLAVIVVPA-KYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCEEEEecCH-HHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 9999999994 2334443 33333 333 344444333332 236788888887765543
No 399
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.11 E-value=0.9 Score=43.66 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
++++.|+|.|..+++++..| ...|+ +|++++|+.+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence 46899999999999999987 46787 59999998754
No 400
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.06 E-value=0.3 Score=45.10 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=47.5
Q ss_pred EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEEcc
Q 016620 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 168 vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl~l 244 (386)
|.|+|. |.+|+++++.|. .-+.+|.+..|.......+. ++..+..-. ......+|.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 678986 999999999985 57888998888764432221 111221111 1112346777899999999999
Q ss_pred CCC
Q 016620 245 VLD 247 (386)
Q Consensus 245 Plt 247 (386)
|..
T Consensus 73 ~~~ 75 (233)
T PF05368_consen 73 PPS 75 (233)
T ss_dssp SCS
T ss_pred Ccc
Confidence 954
No 401
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.03 E-value=0.86 Score=45.23 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiVvl 242 (386)
.|.+|.|.|.|.+|...++.+ +.+|++|++.+.+...... . .++.+...... .....+.++....|+|+-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~-~-------~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSNKEDE-A-------INRLGADSFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcchhhh-H-------HHhCCCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence 688999999999999999984 8999999887765433211 0 11112110000 000122333334688887
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+... +.+ + .+.++.++++..++.++.
T Consensus 254 ~~g~-~~~---~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVSA-VHA---L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCCC-HHH---H-HHHHHHhcCCcEEEEeCC
Confidence 7652 111 1 335667788888877754
No 402
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.96 E-value=0.35 Score=49.91 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=66.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.|++|+|+|+|.-|.+.|+.| +. |++|+++|........ . .. +.. . . ... ....+.+.++|+|+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~----~~~--~-~--~~~-~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EE----LYS--K-N--AIA-ALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hh----hhc--C-c--eec-cCChhHhhCCCEEEEC
Confidence 578999999999999999998 45 9999999954332111 0 00 000 0 0 000 1113456789999887
Q ss_pred cCCChhh----------hhcccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 016620 244 PVLDKTT----------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQN 289 (386)
Q Consensus 244 lPlt~~t----------~~li~~~~~--~~mk~-gailIN~aRg~~vde~aL~~aL~~g 289 (386)
.-..+.+ ..++++-.| ..+++ ..+-|--+.|+.--..-|...|+..
T Consensus 71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 5332221 124444322 33433 3555666778887777777777763
No 403
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.89 E-value=0.96 Score=44.06 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=55.7
Q ss_pred CCeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHh-----hh
Q 016620 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVL-----RE 236 (386)
Q Consensus 165 g~~vgIvG~-G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell-----~~ 236 (386)
|.+|.|.|. |.+|...++.+ +.+|+ +|++.+++..... + ++. .+..........++.+.+ ..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~~~--~-------~~~~lGa~~vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEKCQ--L-------LKSELGFDAAINYKTDNVAERLRELCPEG 224 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHhcCCcEEEECCCCCHHHHHHHHCCCC
Confidence 489999998 99999999974 89999 7999887654321 1 111 222111111112333322 24
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
.|+|+-++.. .. + .+.++.++++..+|.++
T Consensus 225 vd~vid~~g~----~~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 225 VDVYFDNVGG----EI-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred ceEEEECCCc----HH-H-HHHHHHhccCCEEEEEe
Confidence 6778776652 11 2 55677788888888775
No 404
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.86 E-value=0.76 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
.|.+|.|.|.|.+|...++.+ +..|+ +|++.+++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence 578999999999999999874 78999 69988876644
No 405
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.80 E-value=0.38 Score=47.09 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=43.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCc--EEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
++|+|+|. |.+|..+|..|+ ..|. +|+.+|+.. ........+.++... ..+.. .......+.+ .+++||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~-~~~~~-~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALA-AAGID-AEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchh-ccCCC-cEEEECCCHH-HhCCCCEE
Confidence 47999998 999999999874 3343 699999843 111111111110000 00100 1121223444 58999999
Q ss_pred EEccCC
Q 016620 241 SLHPVL 246 (386)
Q Consensus 241 vl~lPl 246 (386)
+++...
T Consensus 77 iitag~ 82 (309)
T cd05294 77 IITAGV 82 (309)
T ss_pred EEecCC
Confidence 999753
No 406
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.76 E-value=1.5 Score=44.65 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=68.5
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl 246 (386)
++.|+|+|.+|.++|+.| +..|.+|.++|............ .++.. .+.......+ .+.+.++|+|+...-.
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence 478999999999999998 68999999999765432111000 01100 1111111123 3556789998877533
Q ss_pred Chhhh----------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 247 DKTTY----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 247 t~~t~----------~li~~~-~~-~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
.+... .++.+. .+ ..++...+-|.-+.|+.--..-|...|+...
T Consensus 73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 22211 234333 22 3344456778888899877777777777643
No 407
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.75 E-value=0.42 Score=53.98 Aligned_cols=106 Identities=10% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH--h--------hhh------hhhhhcC---CCCc-c
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AYG------QFLKANG---EQPV-T 223 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~--~--------~~~------~~~~~~~---~~~~-~ 223 (386)
.-.+|.|+|.|.+|+..++.+ .++|++ . .++..-..+.... . .|. ....+.+ .... .
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 346799999999999999986 788888 2 3332222121100 0 000 0000000 0000 0
Q ss_pred c-----cccCC-HHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCc----EEEEcC
Q 016620 224 W-----KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 272 (386)
Q Consensus 224 ~-----~~~~~-l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~ga----ilIN~a 272 (386)
+ .+... +++.+..+|+|+.|+-..+.+-.++.++ ..+.||+|+ +++|++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 0 00011 3578889999999997777788899988 777899998 888875
No 408
>PRK05442 malate dehydrogenase; Provisional
Probab=91.71 E-value=0.58 Score=46.19 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=42.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (386)
.+|+|+|. |.+|..+|-.|.. +.-- ++..+|..... ......+. .... ..........+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl-----~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL-----DDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh-----hhhhhhhcCCcEEecChHHHhC
Confidence 38999998 9999999976542 2222 78999974321 11111111 1110 00001111235567789
Q ss_pred hCCEEEEccC
Q 016620 236 EADVISLHPV 245 (386)
Q Consensus 236 ~aDiVvl~lP 245 (386)
+||+|+++.-
T Consensus 80 daDiVVitaG 89 (326)
T PRK05442 80 DADVALLVGA 89 (326)
T ss_pred CCCEEEEeCC
Confidence 9999988754
No 409
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.63 E-value=1.6 Score=44.83 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=62.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhc--CC------cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
-+|+|+|. |.+|..+|-.|+.. || -+++.+|...+.....-++..+... ..........+-.+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~----~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY----PLLREVSIGIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh----hhcCceEEecCCHHHhCc
Confidence 47999999 99999999876432 22 3788889876653333333211110 000111112344577899
Q ss_pred CCEEEEccCC--Ch-hhh--------hcccH--HHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016620 237 ADVISLHPVL--DK-TTY--------HLINK--ERLAT-MKKEAILVNCSRGPVIDEVALV 283 (386)
Q Consensus 237 aDiVvl~lPl--t~-~t~--------~li~~--~~~~~-mk~gailIN~aRg~~vde~aL~ 283 (386)
||+|++..-. .+ .++ .++.+ +.+.. ..+.+++|.++ ..+|.-..+
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 9999998643 22 122 11211 23334 46788888776 444444443
No 410
>PLN02214 cinnamoyl-CoA reductase
Probab=91.42 E-value=0.49 Score=46.65 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=48.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
.+.+++|.|.|. |-||+.+++.| ..-|.+|.+.+|...............................+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 367899999997 99999999998 4678999998876542111100000000000000000111234567788899998
Q ss_pred EEccC
Q 016620 241 SLHPV 245 (386)
Q Consensus 241 vl~lP 245 (386)
+.+..
T Consensus 86 ih~A~ 90 (342)
T PLN02214 86 FHTAS 90 (342)
T ss_pred EEecC
Confidence 77764
No 411
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.40 E-value=0.66 Score=44.22 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=31.1
Q ss_pred cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
Q Consensus 163 l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~ 199 (386)
+.||++.|.|.+ .||+++|+.|+ ..|++|+..+++.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la-~~G~~Vil~~r~~ 41 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACF-EQGAELAFTYLNE 41 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEecCH
Confidence 578999999984 79999999985 6899999888764
No 412
>PRK07411 hypothetical protein; Validated
Probab=91.39 E-value=0.49 Score=47.85 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK 225 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~ 225 (386)
..|...+|+|+|+|.+|..+|+.|+ ..|. ++..+|...-.. + +++ .+...+.+++... .....
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np-~v~v~ 111 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINP-YCQVD 111 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCC-CCeEE
Confidence 4689999999999999999999985 5565 677887543210 0 000 0000111111110 01111
Q ss_pred ------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCC
Q 016620 226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (386)
Q Consensus 226 ------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ 264 (386)
...+..++++.+|+|+.|+- +.+++.++++.....-+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 112 LYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 11234578899999988875 567888888776654443
No 413
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.39 E-value=0.31 Score=49.48 Aligned_cols=45 Identities=20% Similarity=0.424 Sum_probs=31.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhh
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAY 210 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~ 210 (386)
.+|||.|||+||+.++|.+...++++|++ .|+......-.|.-.|
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllky 131 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKY 131 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhh
Confidence 48999999999999999852247899888 5655444333444333
No 414
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.37 E-value=2 Score=44.07 Aligned_cols=115 Identities=19% Similarity=0.136 Sum_probs=67.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiVvl 242 (386)
.+-+|+|+|+|.+|.++|+.| ...|.+|.++|.......... ++... .+..... ..+ .+.+.++|+|+.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~ 74 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIII 74 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEE
Confidence 345799999999999999987 689999999997643211110 11100 0111111 112 345678999887
Q ss_pred ccCCChhhh----------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 243 HPVLDKTTY----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 243 ~lPlt~~t~----------~li~~~-~~-~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
..-..++.. .++.+- .+ ..++...+-|--+.|+.--..-+...|+.
T Consensus 75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 753322211 234332 33 23444456677778887767777777765
No 415
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=91.26 E-value=0.46 Score=47.08 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.6
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
+|||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~ 33 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN 33 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence 599999999999999985 789999999998754
No 416
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.16 E-value=0.54 Score=46.47 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620 165 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (386)
Q Consensus 165 g~~vgIvG~-G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 240 (386)
+++|+|+|. |.+|+.+.+.|+ ..+. ++.+..+...... .+.-.+ ....... .+. +.+..+|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g~---------~l~~~g-~~i~v~d-~~~-~~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAGK---------ELSFKG-KELKVED-LTT-FDFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCCC---------eeeeCC-ceeEEee-CCH-HHHcCCCEE
Confidence 468999998 999999999984 5322 4455543321100 010001 1111111 122 334789999
Q ss_pred EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+.|+|.. .+..+. .+. .+.|+++||.|.
T Consensus 68 f~A~g~g-~s~~~~-~~~---~~~G~~VIDlS~ 95 (334)
T PRK14874 68 LFSAGGS-VSKKYA-PKA---AAAGAVVIDNSS 95 (334)
T ss_pred EECCChH-HHHHHH-HHH---HhCCCEEEECCc
Confidence 9999853 223322 222 356889998774
No 417
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.15 E-value=0.61 Score=45.95 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=43.4
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~~fg~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~ 235 (386)
+|+|||. |.+|..+|-.|. ..+. ++..+|..... ....-.+. .... ..........+..+.++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence 7999998 999999998763 3343 79999985321 11111111 1111 00001111245567889
Q ss_pred hCCEEEEccCC
Q 016620 236 EADVISLHPVL 246 (386)
Q Consensus 236 ~aDiVvl~lPl 246 (386)
+||+|+++.-.
T Consensus 79 daDvVVitAG~ 89 (323)
T TIGR01759 79 DVDAALLVGAF 89 (323)
T ss_pred CCCEEEEeCCC
Confidence 99999988643
No 418
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=91.14 E-value=1.3 Score=43.14 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
.|.+|.|.|.|.+|+.+++.+ +..|++|++.+++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChH
Confidence 578999999999999999985 899999999987643
No 419
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.13 E-value=1.2 Score=44.00 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~ 201 (386)
.|++|.|.|.|.+|...++.+ +.+|++ |++.+++...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 588999999999999999974 789985 8888876543
No 420
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.08 E-value=0.74 Score=44.59 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=51.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
.|+++.|+|.|.||...++.+ +.+|++ |.+.|+.... ++. ++... . ...-++.-...|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~r-l~~-----------a~~~~--~--i~~~~~~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRR-RDG-----------ATGYE--V--LDPEKDPRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHH-HHh-----------hhhcc--c--cChhhccCCCCCEEEE
Confidence 577899999999999999875 789997 5556664432 111 11100 0 0110111134688887
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
+.... .+ + ...++.++++..++.+|
T Consensus 207 ~~G~~-~~---~-~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ASGDP-SL---I-DTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCCH-HH---H-HHHHHhhhcCcEEEEEe
Confidence 76531 11 1 44567788888887765
No 421
>PRK07877 hypothetical protein; Provisional
Probab=91.00 E-value=0.81 Score=49.87 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=59.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhh-----HH----H----HHHhhhhhhhhhcC-CCCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQAT-----RL----E----KFVTAYGQFLKANG-EQPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~-----~~----~----~~~~~~~~~~~~~~-~~~~~~ 224 (386)
..|++++|+|+|+| +|..+|..|+ ..| -++..+|...-+ +. . ...+...+.+.+.. ...+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999 9999999986 455 377777743211 00 0 00000001111111 001110
Q ss_pred c----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620 225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (386)
Q Consensus 225 ~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~ 261 (386)
. ...+++++++++|+|+-|+. +-+++.++++....+
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 12367888999999999997 468899998776654
No 422
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.00 E-value=1 Score=43.94 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=56.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiVv 241 (386)
-.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++..... +.. ..+..........+ ..+.-...|+|+
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~-------~~g~~~vi~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKE--DAL-------KLGADEFIATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHH-------HcCCcEEecCcchhhhhhccCCceEEE
Confidence 3577999999999999999885 789999999987654321 111 11111000000001 112234567777
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
.|.+.. ....+.++.++++..+++++.
T Consensus 238 ~~~g~~-----~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 238 DTVSAS-----HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred ECCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence 776642 112455666777777777654
No 423
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.97 E-value=0.53 Score=46.42 Aligned_cols=75 Identities=24% Similarity=0.188 Sum_probs=42.2
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhhH-HHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~~fg~-------~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
+|+|+|. |.+|..+|..|. ..+. ++..+|...... ... ..+.. +.............+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~----d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM----DCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEeehh----cccchhcCceeccCChHHHhCC
Confidence 5899999 999999998874 3222 588999754321 100 00100 0000000111112255678899
Q ss_pred CCEEEEccCC
Q 016620 237 ADVISLHPVL 246 (386)
Q Consensus 237 aDiVvl~lPl 246 (386)
||+|+++.-.
T Consensus 76 aDiVVitAG~ 85 (324)
T TIGR01758 76 VDVAILVGAF 85 (324)
T ss_pred CCEEEEcCCC
Confidence 9999987543
No 424
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.93 E-value=1.3 Score=43.69 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=57.8
Q ss_pred eEEEEec-ChhHHHHHHHHHh-cC-Cc----EEEEEcCCh--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhh
Q 016620 167 TVGVIGA-GRIGSAYARMMVE-GF-KM----NLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~-~f-g~----~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~ 236 (386)
+|+|+|. |.||..+|..|+. +. +. ++..+|... ........+ +.... ..........+..+.+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999988742 11 11 588999865 211000000 00000 000001112456788999
Q ss_pred CCEEEEccCC--Ch-hhhh-cc--c----H---HHHhcC-CCCcEEEEcCCCcccCHHHH
Q 016620 237 ADVISLHPVL--DK-TTYH-LI--N----K---ERLATM-KKEAILVNCSRGPVIDEVAL 282 (386)
Q Consensus 237 aDiVvl~lPl--t~-~t~~-li--~----~---~~~~~m-k~gailIN~aRg~~vde~aL 282 (386)
||+|+++.-. .+ +|+. ++ | + ..+... ++.+++|.++ ..+|.-+-
T Consensus 77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~ 134 (323)
T cd00704 77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNAL 134 (323)
T ss_pred CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHH
Confidence 9999887533 22 1221 11 1 1 123334 5788888875 45554443
No 425
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=90.92 E-value=0.71 Score=49.13 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=33.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
....++|||||-|..|+.+++.+ +.+|.+|+++|+.+.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence 47889999999999999999985 789999999998764
No 426
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.87 E-value=1.1 Score=44.05 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.|.+|.|+|.|.||...++.+ +..|.+|++.+++...
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence 588999999999999999985 7899999999876643
No 427
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.83 E-value=1.4 Score=42.69 Aligned_cols=94 Identities=20% Similarity=0.146 Sum_probs=56.8
Q ss_pred CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhh-----h
Q 016620 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E 236 (386)
Q Consensus 164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~ 236 (386)
.|.+|.|.| .|.+|...++.+ +..|++|++.+++.+.. ++ +++.+......... .++.+.+. .
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AY-------LKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HH-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 578999999 499999999975 89999999888765432 11 12222211111011 12333221 3
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
.|+|+-+... .. + ...++.++++..++..+.
T Consensus 208 vdvv~d~~G~----~~-~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVGG----EF-S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCCH----HH-H-HHHHHHhCcCcEEEEecc
Confidence 5777766642 11 2 556777888888888764
No 428
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.78 E-value=0.82 Score=41.30 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=66.3
Q ss_pred eEEEEecChhHHH--HHHHHH--hcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620 167 TVGVIGAGRIGSA--YARMMV--EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (386)
Q Consensus 167 ~vgIvG~G~IG~~--iA~~L~--~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv 241 (386)
+|+|||.|+.--. +...+. ..+. .++..+|.+.+. ++. ...+.+...+....+..+....+.+|+++.||+|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~R-L~~-~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEER-LEI-VERLARRMVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHH-HHH-HHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHH-HHH-HHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 5899999987554 222222 2444 379999998743 221 11222222223334455666789999999999999
Q ss_pred EccCCChhh-----------hhccc------------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 242 LHPVLDKTT-----------YHLIN------------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 242 l~lPlt~~t-----------~~li~------------------------~~~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
++.-....- +++.. .+.+....|+|.++|.+-..-+-..++.+..
T Consensus 79 ~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~ 158 (183)
T PF02056_consen 79 NQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYT 158 (183)
T ss_dssp E---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHS
T ss_pred EEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhC
Confidence 987543210 11111 1224445689999999887766666665444
No 429
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.77 E-value=1.5 Score=41.80 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA 200 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~ 200 (386)
.|.+|.|+|.|.||...++.+ +.+|++ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHH
Confidence 688999999999999999985 789997 888876554
No 430
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.67 E-value=0.5 Score=46.26 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=45.9
Q ss_pred CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCcccc-cc-CCHHHHhhhCCEEE
Q 016620 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RA-SSMDEVLREADVIS 241 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~~l~ell~~aDiVv 241 (386)
++|+|+|.|.||+++|-+|. +.++-++..||.......-.-.+ +.... ....... .. .+ .+.++.||+|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV 74 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence 47999999999999998764 35666899999873321111111 11111 0101111 11 12 45678999999
Q ss_pred Ecc--CCChh
Q 016620 242 LHP--VLDKT 249 (386)
Q Consensus 242 l~l--Plt~~ 249 (386)
++. |.-|.
T Consensus 75 itAG~prKpG 84 (313)
T COG0039 75 ITAGVPRKPG 84 (313)
T ss_pred EeCCCCCCCC
Confidence 987 55543
No 431
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.63 E-value=2.2 Score=41.33 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=68.8
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
|++++|||--.=-..+++.| ...|++|..|.-.... .+.. +.....+.++.++++|+|++=+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLE---------------DGFT--GAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEeccccc---------------cccc--cceeecchhhhhccCCEEEECC
Confidence 67899999877777899998 5789887776532110 0001 2223345566689999999999
Q ss_pred CCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620 245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (386)
Q Consensus 245 Plt~~t~----------~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 294 (386)
|.+.+.. -.++++.++.|+++++ +-+|. +..+|-++.++..+.-.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLI 117 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEE
Confidence 9766532 1257889999998655 44443 33455555555544443
No 432
>PRK12742 oxidoreductase; Provisional
Probab=90.63 E-value=1.4 Score=40.20 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.0
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
.+.|+++.|.|. |.||+.+|+.| ...|++|+...++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 367899999996 89999999998 4789998876553
No 433
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.61 E-value=0.52 Score=43.95 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=32.3
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
.+.|+++.|.|. |.||+.+|+.|+ ..|++|+..+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~-~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLA-QAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 478999999975 799999999984 78999999988654
No 434
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.57 E-value=0.84 Score=46.58 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=65.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
+.+++|.|+|+|..|.+.++.| +..|.+|.++|.......... +. .+ ..........+.+...|+|+.
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv~ 71 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIVA 71 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEEE
Confidence 5688999999999999999887 688999999997543211000 11 11 111111112244567887666
Q ss_pred ccCCChhhh----------hcccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 243 HPVLDKTTY----------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 243 ~lPlt~~t~----------~li~~-~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
..-..++.. .++.+ +.+.. ++...+-|--+.|+.--..-|...|+.
T Consensus 72 spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 72 SPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 542222211 12333 33333 333455577777887666667777764
No 435
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.49 E-value=1.3 Score=43.76 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=58.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiVv 241 (386)
..|.+|.|.|.|.+|...++.+ +..|++|++.+++...... . .+..+....... ....+.+.....|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~-------~~~~Ga~~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-A-------LEHLGADDYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-H-------HHhcCCcEEecCCChHHHHHhcCCCcEEE
Confidence 3678999999999999999874 8999999888776543211 1 111122110000 0011223334568888
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
-++.... + -...++.++++..++.++.
T Consensus 250 d~~g~~~-~----~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVFH-P----LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ECCCchH-H----HHHHHHHhccCCEEEEECC
Confidence 8876321 1 1345677888888888764
No 436
>PRK08324 short chain dehydrogenase; Validated
Probab=90.46 E-value=0.72 Score=50.05 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=34.5
Q ss_pred cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 161 ~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
..+.|+++.|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 4779999999987654
No 437
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.42 E-value=1.1 Score=43.19 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=58.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhhC
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA 237 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~a 237 (386)
..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++..... +.. +.+..........+.. .. -...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAK-------KLGATETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHH-------HhCCeEEecCCCCCHHHHHHhcCCCC
Confidence 3578999999999999999985 799998 788877654321 111 1111100000001111 11 2357
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~ 275 (386)
|+++-+.+... ...+.++.|+++..++.++..+
T Consensus 228 d~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 228 DVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred cEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence 88887765311 2245567788888888887644
No 438
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.35 E-value=1.1 Score=44.79 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiVvl 242 (386)
.|.+|.|.|.|.+|...++. ++.+|++|++.+++.+.+.+ + .+..+...... .....+.+.....|+|+-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~~~~-~-------a~~lGa~~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEKERE-A-------IDRLGADSFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHHhHH-H-------HHhCCCcEEEcCcCHHHHHHhhCCCcEEEE
Confidence 68899999999999999998 48999999988876433211 1 11112111000 000012222334688877
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
+.... .+ + ...++.++++..++.++-
T Consensus 249 ~~G~~-~~---~-~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 249 TVSAE-HA---L-LPLFSLLKVSGKLVALGL 274 (375)
T ss_pred CCCcH-HH---H-HHHHHhhcCCCEEEEEcc
Confidence 76421 11 1 334566777777777653
No 439
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.23 E-value=2.3 Score=42.20 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=56.8
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC-C----HHHHh--hh
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE 236 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~ 236 (386)
+.+|.|+|.|.||...+..+ +.+|+ +|++.|++..+..-. +............. + ..++- ..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A---------~~~~g~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERLELA---------KEAGGADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHH---------HHhCCCeEeecCccccHHHHHHHHhCCCC
Confidence 33999999999999988874 78886 677878876542111 11011110010001 1 11222 24
Q ss_pred CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
+|+++-|... +.+ -.+.+...+++..++.+|-.
T Consensus 239 ~D~vie~~G~-~~~----~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVGS-PPA----LDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCCC-HHH----HHHHHHHhcCCCEEEEEecc
Confidence 8999999872 221 24567778888888777654
No 440
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.21 E-value=1.9 Score=42.35 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl 242 (386)
.|.+|.|+|.|.||...++.+++.+ +.+|++.+++..+... .+..+.. ....++.+-. ..|+|+-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~---------a~~~~~~----~~~~~~~~~~-g~d~viD 228 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL---------FSFADET----YLIDDIPEDL-AVDHAFE 228 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH---------HhhcCce----eehhhhhhcc-CCcEEEE
Confidence 5889999999999999888653235 4689999987543211 1111110 0011111111 3688887
Q ss_pred ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
+.... .+...+ .+.++.++++..++.++
T Consensus 229 ~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 229 CVGGR-GSQSAI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence 77631 011112 44677788888887765
No 441
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.17 E-value=0.45 Score=36.38 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.3
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
+|.|||-|.+|-.+|..| +.+|.+|+.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 588999999999999998 589999999987654
No 442
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.16 E-value=0.57 Score=42.36 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=44.9
Q ss_pred eEEEEecChhHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620 167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~-L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl 242 (386)
++.|||.|++|++++.. ..+..||++. +||..+..- ....+ +......+++++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-----------G~~~~--~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-----------GTKIG--DVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-----------CcccC--CeeeechHHHHHHHHhcCccEEEE
Confidence 58999999999999953 2246788855 677665421 01111 233445567888887 5677899
Q ss_pred ccCC
Q 016620 243 HPVL 246 (386)
Q Consensus 243 ~lPl 246 (386)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9995
No 443
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.09 E-value=1.1 Score=42.01 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.++++.|.|. |.||+++|+.|++.-|++|+..+|+...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 4678888876 8999999998753325899999887654
No 444
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.08 E-value=0.95 Score=42.10 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.+.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+...
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~~ 46 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPAK 46 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 478999999986 999999999985 679999999987643
No 445
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=90.06 E-value=1.1 Score=44.50 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=49.7
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhc--C-CcEEEEEcC--ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~~--f-g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
...+|+|+|. |.+|+.+.+.|. . + ..++.+... +.... ....+ ...... ..+. +.+..+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaGk~-----------~~~~~-~~~~v~-~~~~-~~~~~~ 70 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAGKK-----------VTFEG-RDYTVE-ELTE-DSFDGV 70 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCCCe-----------eeecC-ceeEEE-eCCH-HHHcCC
Confidence 4568999998 999999999984 4 3 224433322 21111 01111 111111 1122 445889
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
|+|++|+|.. ....+. .+. .+.|+.+||.|
T Consensus 71 D~vf~a~p~~-~s~~~~-~~~---~~~g~~VIDlS 100 (344)
T PLN02383 71 DIALFSAGGS-ISKKFG-PIA---VDKGAVVVDNS 100 (344)
T ss_pred CEEEECCCcH-HHHHHH-HHH---HhCCCEEEECC
Confidence 9999999963 223222 111 24688999988
No 446
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=90.03 E-value=0.77 Score=48.00 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=88.9
Q ss_pred cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
..+.|++..|+|=-.| |..++..| +-....|..+... ..++.|.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence 4689999999998765 88899887 5678888876432 2478888999999
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc--eEEeeccCCCCCCCCCCCCCCCeEE
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF--RVGLDVFEDEPYMKPGLSEMKNAIV 317 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~--gaalDV~~~EP~~~~~L~~~~nvil 317 (386)
|+.++-. .+++..+. +|||+++|+++---+-|. ++-. -..=||-.++-. + ---.+
T Consensus 209 vIvAiG~----PefVKgdW---iKpGavVIDvGINyvpD~---------~Kksg~klvGDVdfe~Ak------e-vas~I 265 (935)
T KOG4230|consen 209 VIVAIGQ----PEFVKGDW---IKPGAVVIDVGINYVPDP---------SKKSGFKLVGDVDFESAK------E-VASFI 265 (935)
T ss_pred EEEEcCC----cceeeccc---ccCCcEEEEccccccCCC---------CCcccceEeeecchHhhh------h-hhhcc
Confidence 9999963 44454444 689999999987554331 2222 233366544321 1 11368
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620 318 VPHIASASKWTREGMATLAALNVLGKIKG 346 (386)
Q Consensus 318 TPHia~~t~~~~~~~~~~~~~ni~~~~~g 346 (386)
||-=||--+-+..-+.+-+++...+++.+
T Consensus 266 TPVPGGVGPMTVAMLmqNtveaAKR~r~e 294 (935)
T KOG4230|consen 266 TPVPGGVGPMTVAMLMQNTVEAAKRQREE 294 (935)
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99778766655555555556666666654
No 447
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.97 E-value=1.8 Score=43.55 Aligned_cols=96 Identities=19% Similarity=0.349 Sum_probs=66.4
Q ss_pred cccccCCCeEEEEec---Chh-------HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 016620 159 VGNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~---G~I-------G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (386)
.++.+.|.+|.|+|+ |.+ .-.+.+.| ...|.+|.+|||+.......+ ...+. ...
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-------------~~~~~-~~~ 380 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-------------DGEGV-TLA 380 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-------------hcccc-chh
Confidence 357799999999998 544 45688887 578999999999876411000 00001 136
Q ss_pred CHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 229 ~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
++++.++.+|+|++.+-. +...-++.+.+..+ ..+++++ |+
T Consensus 381 ~~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 381 ILEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred hHHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC-cc
Confidence 889999999999999864 22335777777755 5677775 53
No 448
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=89.85 E-value=1.7 Score=42.39 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=57.9
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHH----Hhh-hC
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA 237 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a 237 (386)
.|++|.|.|.|.+|+.+++.+ +..|++|++.+++..... + ++..+......... .++.+ +.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~-------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--L-------ARELGAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--H-------HHHhCCCEEEccccchhHHHHHHHHhCCCC
Confidence 578999999999999999985 799999998877654321 1 11112111100011 12222 111 47
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg 274 (386)
|+++-+... ..+ -...++.++++..+++++..
T Consensus 235 d~vi~~~g~-~~~----~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 235 HVSVDALGI-PET----CRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred CEEEEcCCC-HHH----HHHHHHHhhcCCEEEEeCCc
Confidence 888877642 111 23567778888888887653
No 449
>PRK12747 short chain dehydrogenase; Provisional
Probab=89.82 E-value=1.5 Score=40.56 Aligned_cols=34 Identities=29% Similarity=0.210 Sum_probs=28.3
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcC
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL 197 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~ 197 (386)
+.|+++.|.|. |.||+++|+.|+ ..|++|+..++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~-~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcC
Confidence 46889999985 899999999984 78999988653
No 450
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=89.81 E-value=0.72 Score=44.94 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=54.4
Q ss_pred EEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC-
Q 016620 170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD- 247 (386)
Q Consensus 170 IvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt- 247 (386)
|||.|.+|..+|-.|+. .+.-++..+|.........-.+.. ..............+-.+.+++||+|+++.-..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~----~~~~~~~~~~~i~~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQ----HAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHH----HhhcccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence 68999999999987642 444479999986543222222211 011111111111123357789999999975431
Q ss_pred -h-hhh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620 248 -K-TTY--------HLIN--KERLATMKKEAILVNCS 272 (386)
Q Consensus 248 -~-~t~--------~li~--~~~~~~mk~gailIN~a 272 (386)
+ .++ .++. .+.+....+.+++++++
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 1 122 1111 12333456888998876
No 451
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.74 E-value=0.71 Score=42.82 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.5
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.+.|+++.|.|. |.||+.+|+.|+ .-|++|+..+|+...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 478999999987 899999999985 679999999987643
No 452
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.72 E-value=1.9 Score=42.52 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=32.0
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
-.|.+|.|.|. |.+|...++.+ +.+|++|++.+++...
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k 195 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQK 195 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence 35889999999 99999999974 8999999988776543
No 453
>PLN02740 Alcohol dehydrogenase-like
Probab=89.72 E-value=1.7 Score=43.35 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
-.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK 235 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence 4688999999999999999985 89999 69988876543
No 454
>PRK07985 oxidoreductase; Provisional
Probab=89.71 E-value=1.1 Score=43.16 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=30.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|+..++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence 378999999986 899999999985 679999887654
No 455
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.55 E-value=0.89 Score=43.74 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.5
Q ss_pred ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
+..+.|+++.|.|. |.||+++|+.|+ .-|++|+..+|+..
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence 35688999999987 999999999985 67999999998764
No 456
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.54 E-value=0.77 Score=40.03 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=24.6
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEE-cC
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL 197 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~ 197 (386)
+|||+|+|.||+.+++.+.+.-++++.+. |+
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 79999999999999998644457787664 53
No 457
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.52 E-value=1.5 Score=44.38 Aligned_cols=91 Identities=8% Similarity=-0.079 Sum_probs=53.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCE
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV 239 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi 239 (386)
...++-|+|+|.+|+.+++.| +..|.++.+.+++..... ...+. ........+.+.+ +++|+.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~~-----------~~~g~-~vI~GD~td~e~L~~AgI~~A~a 305 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEHR-----------LPDDA-DLIPGDSSDSAVLKKAGAARARA 305 (393)
T ss_pred cCCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhhh-----------ccCCC-cEEEeCCCCHHHHHhcCcccCCE
Confidence 356799999999999999998 567888888886532110 01111 1111112222222 568899
Q ss_pred EEEccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620 240 ISLHPVLDKTTYHLINKERLATMKKEAILV 269 (386)
Q Consensus 240 Vvl~lPlt~~t~~li~~~~~~~mk~gailI 269 (386)
|+++++.+.++... ....+.+.|...+|
T Consensus 306 VI~~t~dD~~Nl~i--vL~ar~l~p~~kII 333 (393)
T PRK10537 306 ILALRDNDADNAFV--VLAAKEMSSDVKTV 333 (393)
T ss_pred EEEcCCChHHHHHH--HHHHHHhCCCCcEE
Confidence 99988865554433 33445555554443
No 458
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.48 E-value=2.2 Score=41.65 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=31.9
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
-.|.+|.|.|. |.+|+.+++.+ +.+|++|++.+++...
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~ 188 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEK 188 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 36889999998 99999999975 8999999988776543
No 459
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.41 E-value=0.47 Score=40.19 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 016620 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
Q Consensus 165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~ 199 (386)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 578999999999999999985 4566 788888654
No 460
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.33 E-value=0.81 Score=48.43 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=32.3
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
-.|++|.|.|. |.||+.+++.|+ ..|++|.+++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHH
Confidence 46789999987 999999999984 679999999887654
No 461
>PRK06182 short chain dehydrogenase; Validated
Probab=89.21 E-value=1.2 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.++++.|.|. |.||+++|+.|+ .-|++|++.+|+...
T Consensus 2 ~~k~vlItGasggiG~~la~~l~-~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLA-AQGYTVYGAARRVDK 39 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 4688999996 899999999984 679999999987653
No 462
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.15 E-value=4.4 Score=41.45 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=66.0
Q ss_pred cCC-CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCE
Q 016620 163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (386)
Q Consensus 163 l~g-~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 239 (386)
+.+ ++|.|+|+|.+|.+.++.|.+.-| ++|.++|.......... ++. +.... ...+ .+.+.++|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~----g~~~~~g~~~-~~~~~~~d~ 71 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE----DVELHSGGWN-LEWLLEADL 71 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc----CCEEEeCCCC-hHHhccCCE
Confidence 455 789999999999999998754444 89999997543211110 111 11111 1112 234578998
Q ss_pred EEEccCCChhhh----------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620 240 ISLHPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 240 Vvl~lPlt~~t~----------~li~~-~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~ 288 (386)
|+...-..+... .++.+ +.+ ..++...+-|--+-|+.--..-|...|+.
T Consensus 72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 887753322211 23333 232 23444556677777887766667777765
No 463
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.07 E-value=1.9 Score=44.34 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=72.9
Q ss_pred CeEEEEecChhHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhhCC
Q 016620 166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD 238 (386)
Q Consensus 166 ~~vgIvG~G~IG~~--iA~~L~~---~fg-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aD 238 (386)
++|.|||.|+. .. +.+-|.+ .++ -+|..+|...... +. ...+.... +..+ .+..+....+.+|++..||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence 47999999986 33 3332221 244 6899999887432 11 11111222 2223 3445666789999999999
Q ss_pred EEEEccCCCh-h----------hhhccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 016620 239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH 285 (386)
Q Consensus 239 iVvl~lPlt~-~----------t~~li~----------------------~~~~~~mk~gailIN~aRg~~vde~aL~~a 285 (386)
+|++..-... + -+++++ .+.+....|++++||.+-..=+-..++.+.
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~ 156 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL 156 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence 9998764332 1 112222 112333458999999988765656666655
Q ss_pred HHcCCcceE
Q 016620 286 LKQNPMFRV 294 (386)
Q Consensus 286 L~~g~i~ga 294 (386)
+...++.|.
T Consensus 157 ~~~~kviGl 165 (437)
T cd05298 157 FPNARILNI 165 (437)
T ss_pred CCCCCEEEE
Confidence 433445444
No 464
>PLN02427 UDP-apiose/xylose synthase
Probab=89.01 E-value=0.72 Score=46.11 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=33.4
Q ss_pred cccccCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh
Q 016620 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~~~d~~~~ 200 (386)
.|+.++.++|.|.|. |-||+.+++.|. .- |.+|+++|+...
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND 50 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence 356788899999985 999999999985 44 589999997643
No 465
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.00 E-value=2.8 Score=41.08 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=57.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH----HHHhh--
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR-- 235 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~-- 235 (386)
-.|.+|.|.|.|.+|...++.+ +..|+ +|++.+++..... + ++..+..........++ .++..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~-------~~~~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--L-------AEELGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHhCCCEEECCCccCHHHHHHHHhCCC
Confidence 3578999999999999999985 78999 7888887654321 1 11112111000011122 22222
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
..|+|+-+.... .+ -...++.++++..++.++.
T Consensus 241 ~~d~vid~~g~~-~~----~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGVQ-AT----LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCCH-HH----HHHHHHhccCCCEEEEEcc
Confidence 378888877531 11 1456677888888888764
No 466
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.98 E-value=0.96 Score=41.56 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=32.7
Q ss_pred ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 162 ~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
.+.++++.|.| .|.+|+.+++.|+ ..|++|++.+|+..
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~ 41 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 46789999998 5999999999984 67999999998754
No 467
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=88.96 E-value=2.1 Score=42.31 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=25.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
.+|||=|||+||+.+.|.+...-+.+|.+.+..
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~ 35 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 35 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence 379999999999999997533346788877643
No 468
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.95 E-value=1.4 Score=43.58 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEEEc
Q 016620 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH 243 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVvl~ 243 (386)
.+|+|+|. |-.|.++.++|+.-=..++..++.+... -....+.++ .+ .+....... ..+.+++ ..+||+|++|
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~-g~~~~~~~p-~l--~g~~~l~~~-~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERA-GKPVSDVHP-NL--RGLVDLPFQ-TIDPEKIELDECDVVFLA 77 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhc-CCchHHhCc-cc--ccccccccc-cCChhhhhcccCCEEEEe
Confidence 47999998 9999999999864445676666544321 011111110 00 111111111 1233343 4569999999
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v 277 (386)
+|.... ..++ .+++ .+|..+||.|---=+
T Consensus 78 lPhg~s-~~~v-~~l~---~~g~~VIDLSadfR~ 106 (349)
T COG0002 78 LPHGVS-AELV-PELL---EAGCKVIDLSADFRL 106 (349)
T ss_pred cCchhH-HHHH-HHHH---hCCCeEEECCccccc
Confidence 996432 2222 2222 346668888753333
No 469
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.94 E-value=1.1 Score=45.30 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=50.3
Q ss_pred cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (386)
Q Consensus 163 l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 232 (386)
..|++|+|+|+. +-+..+++.| ...|++|.+|||...... .. ......++.+
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~---------------~~--~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS---------------FF--NSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh---------------hc--CCeeeCCHHH
Confidence 478999999993 5677899998 689999999999754311 11 2334679999
Q ss_pred HhhhCCEEEEccC
Q 016620 233 VLREADVISLHPV 245 (386)
Q Consensus 233 ll~~aDiVvl~lP 245 (386)
.++.||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999998874
No 470
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.93 E-value=3.4 Score=40.01 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=59.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH-----------HhhhhhhhhhcCC-CCccc
Q 016620 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF-----------VTAYGQFLKANGE-QPVTW 224 (386)
Q Consensus 161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~---~~-----------~~~~~~~~~~~~~-~~~~~ 224 (386)
+.|.+.+|.|+|+|.+|.++|+.|+ ..|. ++..+|...-.... +| .+...+.+++... .....
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4589999999999999999999985 5566 68888865421100 00 0000011111111 00111
Q ss_pred cccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (386)
Q Consensus 225 ~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a 272 (386)
......++.+.+.|+|+.+.. +.+++..+|+-.-+ .+.-+|.++
T Consensus 94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~ 137 (286)
T cd01491 94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISAD 137 (286)
T ss_pred EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEe
Confidence 111123577889998887764 55666666654433 344455543
No 471
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.92 E-value=0.99 Score=41.27 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.2
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
+.++++.|+|. |.||+.+++.|+ ..|++|++.+|+...
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence 46789999986 999999999985 579999999987643
No 472
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.92 E-value=2.4 Score=40.85 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=58.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCCEEE
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiVv 241 (386)
-.|.+|.|+|.|.+|+.+++.+ +..|.+|++.+++..... +.. ..+..........+. ...-...|+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKRE--LAR-------KLGADEVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHH-------HhCCcEEeccCCcchHHhccCCCCEEE
Confidence 4568899999999999988875 789999999987765421 111 111111000000111 11123578888
Q ss_pred EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
-++.... ...+.++.|+++..+++++.
T Consensus 231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence 7764211 23556788888888888864
No 473
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.78 E-value=3.2 Score=42.42 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=72.1
Q ss_pred CeEEEEecChhHHH-HHHHHHh---cCC-cEEEEEcCC-hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620 166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (386)
Q Consensus 166 ~~vgIvG~G~IG~~-iA~~L~~---~fg-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 239 (386)
.+|.|||.|+.-.. +.+-|++ .++ -+|..+|.. +.. +.. ...+.+........+..+....++++++..||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 47999999997442 3343332 244 689999988 432 211 111111121222223445567899999999999
Q ss_pred EEEccCCChh-hh----------hcc-------------------cHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620 240 ISLHPVLDKT-TY----------HLI-------------------NKE---RLATMKKEAILVNCSRGPVIDEVALVEHL 286 (386)
Q Consensus 240 Vvl~lPlt~~-t~----------~li-------------------~~~---~~~~mk~gailIN~aRg~~vde~aL~~aL 286 (386)
|+++.-.... .+ +++ -.+ .+....|+++++|.+-.-=+-..++.+..
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~ 158 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT 158 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence 9988543221 11 110 011 22233589999999886656666666555
Q ss_pred HcCCcceEE
Q 016620 287 KQNPMFRVG 295 (386)
Q Consensus 287 ~~g~i~gaa 295 (386)
..++.|.+
T Consensus 159 -~~rviGlc 166 (419)
T cd05296 159 -GDRVIGLC 166 (419)
T ss_pred -cCCEEeeC
Confidence 44555553
No 474
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.76 E-value=0.93 Score=44.69 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=44.0
Q ss_pred eEEEEec-ChhHHHHHHHHHh-c-----CCcEEEEEcCChhhH-HHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 167 TVGVIGA-GRIGSAYARMMVE-G-----FKMNLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 167 ~vgIvG~-G~IG~~iA~~L~~-~-----fg~~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
+|+|+|. |.+|+.++..|.. + .+.++..+|+..... ... ..+. .+.............++.+.++.|
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKDV 79 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCCC
Confidence 6999999 9999999988742 1 124899999854211 111 0000 000000000111235777889999
Q ss_pred CEEEEccCC
Q 016620 238 DVISLHPVL 246 (386)
Q Consensus 238 DiVvl~lPl 246 (386)
|+|+++.-.
T Consensus 80 DiVI~tAG~ 88 (325)
T cd01336 80 DVAILVGAM 88 (325)
T ss_pred CEEEEeCCc
Confidence 999887543
No 475
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.70 E-value=2.4 Score=41.96 Aligned_cols=38 Identities=32% Similarity=0.339 Sum_probs=32.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
-.|.+|.|.|.|.+|...++.+ +.+|+ +|++.+++...
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 3688999999999999999985 79999 79999877543
No 476
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=88.55 E-value=5.1 Score=34.26 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=48.0
Q ss_pred cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (386)
Q Consensus 227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~ 301 (386)
..+-++++++||+|+-.-|.+ .+.++.|++|.+++-..... ....+++.|.++++...++|-...
T Consensus 55 ~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 55 VSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp ESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred ecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 345679999999998877753 55678899999999887644 588888888889999999987654
No 477
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.50 E-value=2.6 Score=40.53 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.|.+|.|.| .|.+|..+++.+ +.+|++|++.+++...
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA-~~~G~~vi~~~~s~~~ 180 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIA-KIKGCKVIGCAGSDDK 180 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 578999999 599999999985 7899999988876543
No 478
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.44 E-value=1.3 Score=45.54 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=66.8
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc--ccCC---HHHHhhhCCEEE
Q 016620 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASS---MDEVLREADVIS 241 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---l~ell~~aDiVv 241 (386)
+|.|+|+|..|.+.|+.| ...|.+|.++|+........... .+...+ .... ...+ +.+.+.+.|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~g~~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEG---ITVKLGKPLELESFQPWLDQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcC---CEEEECCccchhhhhHHhhcCCEEE
Confidence 589999999999999987 57899999999765443221000 011111 1111 0111 224677899998
Q ss_pred EccCCChhhh----------hcccHH-H-HhcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 016620 242 LHPVLDKTTY----------HLINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (386)
Q Consensus 242 l~lPlt~~t~----------~li~~~-~-~~~mk~-gailIN~aRg~~vde~aL~~aL~~ 288 (386)
......++.. .++.+- . ...+++ ..+-|--+.|+.--..-|...|+.
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8654433221 123332 2 233333 456677778887767766777765
No 479
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.42 E-value=1.6 Score=43.51 Aligned_cols=164 Identities=13% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcCCcE---EEEEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~---V~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
.+.+|||||. |..|+.+.+.|..--.+. +..+... .... ..-.+ ....... .+.++ ++++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-----------~~~~~-~~l~v~~-~~~~~-~~~~ 69 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-----------VQFKG-REIIIQE-AKINS-FEGV 69 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-----------eeeCC-cceEEEe-CCHHH-hcCC
Confidence 3468999998 999999999985223333 4433322 1111 00001 1111111 24334 4789
Q ss_pred CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC---CCc----c----cCHHHHHHHHHcCCcceEEeeccCCCC-CC
Q 016620 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGP----V----IDEVALVEHLKQNPMFRVGLDVFEDEP-YM 305 (386)
Q Consensus 238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a---Rg~----~----vde~aL~~aL~~g~i~gaalDV~~~EP-~~ 305 (386)
|+++.|+|.. .+..+. .+. .+.|+.+||.| |-+ + ++.+.|.++ .|-++.- ..+..-= +.
T Consensus 70 Divf~a~~~~-~s~~~~-~~~---~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~--~~iIanP--nC~tt~~~la 140 (347)
T PRK06728 70 DIAFFSAGGE-VSRQFV-NQA---VSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEH--KGIIAVP--NCSALQMVTA 140 (347)
T ss_pred CEEEECCChH-HHHHHH-HHH---HHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhcc--CCEEECC--CCHHHHHHHH
Confidence 9999999853 222221 111 35789999988 422 1 344444431 1111000 0000000 00
Q ss_pred CCCCCC---CCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 016620 306 KPGLSE---MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGN 352 (386)
Q Consensus 306 ~~~L~~---~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 352 (386)
-.||.+ ..+|+++-- .+.|-..+..+. ...++..++++|+++...
T Consensus 141 L~PL~~~~~i~~v~V~t~-qavSGAG~~gv~-eL~~qt~~~l~~~~~~~~ 188 (347)
T PRK06728 141 LQPIRKVFGLERIIVSTY-QAVSGSGIHAIQ-ELKEQAKSILAGEEVEST 188 (347)
T ss_pred HHHHHHcCCccEEEEEEe-ecccccchhhHH-HHHHHHHHHhcCCCCccc
Confidence 012222 356777663 334444444443 445778888888775443
No 480
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=88.41 E-value=2.9 Score=39.76 Aligned_cols=96 Identities=22% Similarity=0.169 Sum_probs=55.9
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH----HHHh--h
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--R 235 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell--~ 235 (386)
-.|.+|.|.|.|.+|+.+++.+ +..|++ |++.++...... .... .+..........++ .++. .
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~~~--~~~~-------~g~~~~~~~~~~~~~~~l~~~~~~~ 197 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPARLA--LARE-------LGATEVVTDDSEAIVERVRELTGGA 197 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHH-------hCCceEecCCCcCHHHHHHHHcCCC
Confidence 3678999999999999999985 899999 888877643321 1111 11110000011122 2222 2
Q ss_pred hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
..|+++-+.... . .....++.|+++..+++++.
T Consensus 198 ~vd~vld~~g~~----~-~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 198 GADVVIEAVGHQ----W-PLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CCCEEEECCCCH----H-HHHHHHHHhccCCEEEEEcc
Confidence 367777765421 1 12445677888888888764
No 481
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=88.34 E-value=2.4 Score=44.46 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=64.2
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (386)
Q Consensus 162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 237 (386)
.+.|.+|+++|= |++..+++..+ ..|| ++|.+..|..-.-.+.+.+. ++. .+.......+++|.+++|
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A 242 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK 242 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence 478999999998 58898989886 5798 99999887532111111111 111 122233457899999999
Q ss_pred CEE--EE-------ccCCC--h---h--hhhcccHHHHhcCCCCcEEEEc
Q 016620 238 DVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNC 271 (386)
Q Consensus 238 DiV--vl-------~lPlt--~---~--t~~li~~~~~~~mk~gailIN~ 271 (386)
|+. .. .+... + + -...++++.++.+|++++|.-+
T Consensus 243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc 292 (525)
T PRK13376 243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP 292 (525)
T ss_pred CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence 952 22 22211 0 0 1234688888888888887543
No 482
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.33 E-value=0.65 Score=45.29 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=33.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
=.|+++.|+|+|.+|.++++-. +++|+ ++++.|-++++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHH
Confidence 4789999999999999999984 78888 79999988765
No 483
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=88.32 E-value=3.5 Score=41.67 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=42.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-c-CCc----EEEEE--cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620 166 QTVGVIGA-GRIGSAYARMMVE-G-FKM----NLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (386)
Q Consensus 166 ~~vgIvG~-G~IG~~iA~~L~~-~-fg~----~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 236 (386)
.+|+|+|. |.+|..+|-.|+. + ++. .++.+ |...+.....-.+..+... ..........+-.+.+++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~----~~~~~v~i~~~~y~~~kd 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY----PLLREVSIGIDPYEVFED 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh----hhcCceEEecCCHHHhCC
Confidence 47999999 9999999987643 2 231 34344 6655443222222211110 000111112344577899
Q ss_pred CCEEEEccC
Q 016620 237 ADVISLHPV 245 (386)
Q Consensus 237 aDiVvl~lP 245 (386)
||+|+++.-
T Consensus 121 aDIVVitAG 129 (387)
T TIGR01757 121 ADWALLIGA 129 (387)
T ss_pred CCEEEECCC
Confidence 999999754
No 484
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.28 E-value=0.6 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
++|.|+| -|.+|+.+.+.| +..|.+|+.+++.
T Consensus 1 MriLI~GasG~lG~~l~~~l-~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARAL-KERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHH-TTTSEEEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHH-hhCCCEEEEeCch
Confidence 5799999 599999999998 6789999999765
No 485
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.26 E-value=1.2 Score=43.24 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=44.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl 242 (386)
++|.|.| .|.||+.+++.|. .-|.+|.+.+|+..... + +...+..-. ......++.++++.+|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll-~~g~~V~~l~R~~~~~~--~-------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQAL-DEGYQVRCLVRNLRKAS--F-------LKEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEEcChHHhh--h-------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4789999 4999999999984 67899999988754311 0 000010000 01122456788999999887
Q ss_pred ccC
Q 016620 243 HPV 245 (386)
Q Consensus 243 ~lP 245 (386)
+..
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 654
No 486
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.22 E-value=1.1 Score=41.53 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++...
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~ 45 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLDA 45 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHH
Confidence 478999999997 899999999985 689999999887543
No 487
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.13 E-value=2.3 Score=41.59 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (386)
Q Consensus 164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~ 243 (386)
.|.+|.|.|.|.+|...++. ++..|++|++.+++..... + .++.|...... .. ++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~--~-------a~~~Ga~~vi~--~~--~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARR--L-------ALALGAASAGG--AY--DTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHH--H-------HHHhCCceecc--cc--ccCcccceEEEEC
Confidence 58899999999999988887 5889999999888755421 1 12223211100 00 0111246777766
Q ss_pred cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (386)
Q Consensus 244 lPlt~~t~~li~~~~~~~mk~gailIN~aR 273 (386)
.... . . -...++.++++..++.++.
T Consensus 231 ~~~~-~---~-~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APAG-G---L-VPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCcH-H---H-HHHHHHhhCCCcEEEEEec
Confidence 5532 2 1 2456777888888887764
No 488
>PTZ00188 adrenodoxin reductase; Provisional
Probab=88.06 E-value=2.5 Score=44.14 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=53.7
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-------------HHHHHHhhhhhhhhhcCCC---Cc
Q 016620 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PV 222 (386)
Q Consensus 159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~ 222 (386)
.+.....++|+|||.|.-|-..|+.|++..|.+|..|++.+.. ........+...+...+.. ..
T Consensus 33 ~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv 112 (506)
T PTZ00188 33 FTNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNV 112 (506)
T ss_pred CCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeee
Confidence 3344568899999999999999986544568999999876542 0011111111111111100 11
Q ss_pred cccccCCHHHHhhhCCEEEEccCCC
Q 016620 223 TWKRASSMDEVLREADVISLHPVLD 247 (386)
Q Consensus 223 ~~~~~~~l~ell~~aDiVvl~lPlt 247 (386)
......+++++.++.|.|++++-..
T Consensus 113 ~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 113 HVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred EecCccCHHHHHhcCCEEEEEcCCC
Confidence 1112347899999999999987543
No 489
>PRK08589 short chain dehydrogenase; Validated
Probab=87.98 E-value=0.99 Score=42.67 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~ 198 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence 378999999988 889999999985 679999999987
No 490
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.94 E-value=3.3 Score=41.01 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
..|.+|.|+|.|.+|...++. ++.+|+ +|++.+++...
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~ 221 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK 221 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence 468899999999999999997 489999 69888876543
No 491
>PRK06125 short chain dehydrogenase; Provisional
Probab=87.94 E-value=1.5 Score=40.87 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=33.3
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~~ 43 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDADA 43 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 468899999998 789999999985 679999999987643
No 492
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=87.90 E-value=2.3 Score=42.11 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=25.6
Q ss_pred eEEEEecChhHHHHHHHHHhc--CCcEEEEEcCCh
Q 016620 167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLYQ 199 (386)
Q Consensus 167 ~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d~~~ 199 (386)
+|||=|||+||+.+.|.+... .+.+|.+.+...
T Consensus 3 ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~ 37 (337)
T PRK07403 3 RVAINGFGRIGRNFLRCWLGRENSQLELVAINDTS 37 (337)
T ss_pred EEEEEccChHHHHHHHHHHhccCCCeEEEEecCCC
Confidence 799999999999999975322 467888776533
No 493
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=87.89 E-value=1.2 Score=44.15 Aligned_cols=89 Identities=17% Similarity=0.294 Sum_probs=51.8
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhc--C-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCC
Q 016620 164 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREAD 238 (386)
Q Consensus 164 ~g~~vgIvG~-G~IG~~iA~~L~~~--f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aD 238 (386)
.+.+|+|||. |.+|+.+.+.|. . | ..++..+......- ..+.-.+. ... ..++++. ++++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~-~~~hP~~~l~~laS~~saG---------~~~~~~~~-~~~---v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLA-ERQFPVGELYALASEESAG---------ETLRFGGK-SVT---VQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHh-cCCCCceEEEEEEccCcCC---------ceEEECCc-ceE---EEeCchhhccCCC
Confidence 4568999998 999999999985 4 4 33555553322110 00110111 111 2244443 37899
Q ss_pred EEEEccCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016620 239 VISLHPVLDKTTYHLINKERLATM-KKEAILVNCS 272 (386)
Q Consensus 239 iVvl~lPlt~~t~~li~~~~~~~m-k~gailIN~a 272 (386)
++++|+|.. .. .+..... +.|+.+||.|
T Consensus 69 vvf~a~p~~-~s-----~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 69 LAFFVAGRE-AS-----AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred EEEECCCHH-HH-----HHHHHHHHHCCCEEEECC
Confidence 999999953 22 2222222 5689999998
No 494
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.88 E-value=1.6 Score=40.21 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.7
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (386)
Q Consensus 163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~ 200 (386)
+.|+++.|+|. |.||+.+|+.| ...|++|+..+++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 67999999998 99999999998 467999999998764
No 495
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.87 E-value=2.8 Score=41.68 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=32.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~ 201 (386)
-.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGA-RMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 3578999999999999999974 89999 79998876543
No 496
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.77 E-value=3.9 Score=39.98 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=31.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (386)
Q Consensus 163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~ 201 (386)
-.|++|.|.|.|.+|...++.+ +..|++ |++.+++...
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~ 197 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEK 197 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence 3578999999999999999985 789997 6778776543
No 497
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.73 E-value=3.8 Score=45.46 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=69.2
Q ss_pred CeEEEEecChhHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (386)
Q Consensus 166 ~~vgIvG~G~IG~~i-A~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l 244 (386)
+++.|+|+|.+|.+. |+.| +..|.+|.++|......... ++..+. ...... ..+.+..+|+|+...
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~-~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGH-QEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCC-CHHHcCCCCEEEECC
Confidence 359999999999998 9987 68999999999765432211 222221 111111 235567899998775
Q ss_pred CCChhhh----------hcccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620 245 VLDKTTY----------HLINKE-RLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (386)
Q Consensus 245 Plt~~t~----------~li~~~-~~~~-mk~-gailIN~aRg~~vde~aL~~aL~~g~ 290 (386)
...+++. .++++- .+.. ++. ..+-|--+.|+.=-..-+...|++..
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 4333222 234443 2223 332 35677778899877777777787643
No 498
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=87.69 E-value=2.2 Score=43.23 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=49.5
Q ss_pred ccCCCeEEEEec-----C---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620 162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (386)
Q Consensus 162 ~l~g~~vgIvG~-----G---~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 233 (386)
.+.|++|+|+|- | ++..+++..+ ..||++|.+..|..-...+...+.-.+..+..| .......+++|.
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea 259 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA 259 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 478999999986 5 4558888876 579999999988632111111110000011112 223345799999
Q ss_pred hhhCCEEEEcc
Q 016620 234 LREADVISLHP 244 (386)
Q Consensus 234 l~~aDiVvl~l 244 (386)
++++|+|..-.
T Consensus 260 v~~aDvVYtd~ 270 (395)
T PRK07200 260 FKDADIVYPKS 270 (395)
T ss_pred hCCCCEEEEcC
Confidence 99999998764
No 499
>PRK06196 oxidoreductase; Provisional
Probab=87.66 E-value=1.7 Score=42.15 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (386)
Q Consensus 162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~ 201 (386)
.+.|+++.|.|. |.||+++|+.|+ ..|++|++.+|+...
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDV 62 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 478899999988 889999999985 679999999987543
No 500
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.65 E-value=2.7 Score=41.77 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=24.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcC
Q 016620 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL 197 (386)
Q Consensus 166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~ 197 (386)
.+|+|+| .|.+|+.+++.|..--.+++.++..
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~ 36 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA 36 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence 5899998 8999999999985333458877733
Done!