Query 016621
Match_columns 386
No_of_seqs 280 out of 1462
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 2.6E-78 8.9E-83 597.7 34.4 332 32-366 8-342 (343)
2 3acx_A Dehydrosqualene synthas 100.0 5.8E-58 2E-62 444.0 26.7 269 33-325 10-286 (293)
3 4hd1_A Squalene synthase HPNC; 100.0 2.2E-56 7.4E-61 433.2 24.9 271 32-325 10-282 (294)
4 3rmg_A Octaprenyl-diphosphate 94.8 0.87 3E-05 44.0 15.9 201 64-280 74-308 (334)
5 3lmd_A Geranylgeranyl pyrophos 94.7 0.45 1.5E-05 46.6 13.6 142 135-280 160-334 (360)
6 2q80_A Geranylgeranyl pyrophos 94.6 2.2 7.5E-05 40.5 18.0 142 136-280 112-282 (301)
7 1wmw_A Geranylgeranyl diphosph 94.6 1.9 6.6E-05 41.4 17.8 152 62-230 64-240 (330)
8 4dhd_A Polyprenyl synthetase; 94.4 1.5 5.2E-05 42.7 16.8 141 136-280 133-321 (358)
9 1v4e_A Octoprenyl-diphosphate 94.4 0.87 3E-05 43.3 14.7 93 135-230 127-232 (299)
10 3mzv_A Decaprenyl diphosphate 94.4 0.79 2.7E-05 44.4 14.5 142 135-280 139-315 (341)
11 3aqb_B Component B of hexapren 93.8 3.2 0.00011 39.7 17.4 93 135-230 130-240 (325)
12 1yhl_A Farnesyl pyrophosphate 93.5 3.1 0.00011 40.4 17.2 92 136-230 152-278 (362)
13 2ihi_A Pyrophosphate synthase; 93.3 3.9 0.00013 40.3 17.5 92 136-230 179-314 (395)
14 3tc1_A Octaprenyl pyrophosphat 93.2 2.1 7.1E-05 41.0 15.0 151 62-231 62-230 (315)
15 2ftz_A Geranyltranstransferase 93.2 2.4 8.4E-05 39.9 15.2 128 135-278 134-266 (284)
16 3lom_A Geranyltranstransferase 92.7 2.1 7.3E-05 40.9 14.2 130 136-280 144-287 (313)
17 3p8r_A Geranyltranstransferase 92.7 3.4 0.00012 39.2 15.6 122 145-280 158-286 (302)
18 3uca_A Geranyltranstransferase 92.7 3.2 0.00011 39.9 15.5 122 145-280 180-308 (324)
19 3p8l_A Geranyltranstransferase 92.5 2.9 9.9E-05 39.7 14.8 121 145-279 156-282 (302)
20 2qis_A Farnesyl pyrophosphate 92.4 5.8 0.0002 38.8 17.2 92 136-230 177-292 (374)
21 1rtr_A Geranyltranstransferase 92.3 1.9 6.5E-05 40.9 13.2 122 145-280 148-275 (301)
22 3apz_A Geranyl diphosphate syn 91.9 8.2 0.00028 37.2 17.5 95 134-231 152-264 (348)
23 2e8v_A Geranylgeranyl pyrophos 91.6 5.2 0.00018 38.5 15.6 91 137-230 133-243 (340)
24 1rqj_A Geranyltranstransferase 91.6 3.4 0.00012 39.1 14.1 121 145-279 152-279 (299)
25 1uby_A FPS, farnesyl diphospha 91.5 6.4 0.00022 38.3 16.4 92 136-230 170-285 (367)
26 3pde_A Farnesyl-diphosphate sy 91.5 6.8 0.00023 37.3 16.1 120 145-278 155-280 (309)
27 3ts7_A Geranyltranstransferase 91.4 2.2 7.6E-05 41.0 12.7 122 145-280 158-286 (324)
28 3dyh_A Farnesyl pyrophosphate 90.9 13 0.00044 36.5 18.2 92 136-230 180-306 (390)
29 3m0g_A Farnesyl diphosphate sy 90.7 0.99 3.4E-05 42.9 9.3 122 145-280 147-273 (297)
30 4f62_A Geranyltranstransferase 90.6 2.3 7.7E-05 40.8 11.8 121 146-280 152-279 (317)
31 3ipi_A Geranyltranstransferase 90.6 2.9 0.0001 39.5 12.5 129 135-280 127-266 (295)
32 2h8o_A Geranyltranstransferase 90.4 2.2 7.4E-05 41.3 11.5 121 145-279 192-318 (335)
33 1wy0_A Geranylgeranyl pyrophos 90.2 5.4 0.00018 38.4 14.3 92 137-231 139-248 (342)
34 3lk5_A Geranylgeranyl pyrophos 90.1 10 0.00035 37.1 16.3 90 139-231 179-287 (380)
35 3lsn_A Geranyltranstransferase 89.6 2.5 8.5E-05 40.2 11.1 121 146-280 153-280 (304)
36 3nf2_A Putative polyprenyl syn 88.7 7.1 0.00024 37.8 13.8 92 137-231 145-254 (352)
37 3pko_A Geranylgeranyl pyrophos 88.4 5.8 0.0002 38.1 13.0 93 135-230 143-253 (334)
38 3oyr_A Trans-isoprenyl diphosp 88.1 7.1 0.00024 37.7 13.4 143 135-280 151-327 (345)
39 3v1v_A 2-MIB synthase, 2-methy 87.8 22 0.00077 35.3 17.2 200 60-272 173-391 (433)
40 2azj_A Geranylgeranyl pyrophos 87.3 19 0.00066 33.7 17.1 120 135-279 135-261 (289)
41 3kb9_A EPI-isozizaene synthase 85.8 27 0.00091 33.8 21.0 198 60-275 103-316 (382)
42 2her_A Fragment, farnesyl pyro 84.4 24 0.00083 34.3 15.1 91 137-230 170-278 (368)
43 1n1b_A (+)-bornyl diphosphate 81.4 51 0.0017 33.7 22.9 190 61-270 286-497 (549)
44 3npk_A Geranyltranstransferase 79.7 19 0.00064 33.8 12.0 121 144-280 144-270 (291)
45 3llw_A Geranyltranstransferase 78.8 36 0.0012 32.2 13.8 118 145-278 159-283 (311)
46 2q58_A Fragment, farnesyl pyro 68.1 59 0.002 31.4 12.5 89 139-230 172-278 (368)
47 1ps1_A Pentalenene synthase; a 67.7 79 0.0027 29.4 21.9 202 53-273 53-272 (337)
48 1di1_A Aristolochene synthase; 67.6 73 0.0025 29.0 20.8 195 53-272 49-265 (300)
49 3mav_A Farnesyl pyrophosphate 65.9 1E+02 0.0035 30.0 18.8 34 195-231 272-315 (395)
50 2j1p_A Geranylgeranyl pyrophos 61.4 1E+02 0.0036 28.6 13.2 115 136-278 146-274 (293)
51 3kra_B Geranyl diphosphate syn 56.3 37 0.0013 31.4 8.3 73 137-209 136-219 (274)
52 3bny_A Aristolochene synthase; 54.9 1.3E+02 0.0044 27.6 19.3 193 53-270 63-277 (320)
53 4fp4_A Polyprenyl synthetase; 46.4 79 0.0027 29.5 8.9 75 135-215 133-210 (285)
54 1yyq_A Trichodiene synthase; t 46.4 2.1E+02 0.0072 27.6 18.4 110 57-182 80-193 (374)
55 2j5c_A 1,8-cineole synthase; t 46.1 2.6E+02 0.0089 28.6 22.0 189 62-270 308-517 (569)
56 2ong_A 4S-limonene synthase; m 38.8 3.2E+02 0.011 27.6 25.7 190 61-270 280-490 (543)
57 3qkc_B Geranyl diphosphate syn 33.0 94 0.0032 28.6 7.0 73 136-209 137-220 (273)
58 3n0f_A Isoprene synthase; terp 31.8 4.3E+02 0.015 26.9 22.7 187 62-269 290-498 (555)
59 1yfb_A Transition state regula 27.3 26 0.00087 24.8 1.6 21 223-243 21-41 (59)
60 2l66_A SSO7C4, transcriptional 22.4 40 0.0014 22.9 1.8 21 223-243 11-31 (53)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=2.6e-78 Score=597.74 Aligned_cols=332 Identities=49% Similarity=0.858 Sum_probs=315.6
Q ss_pred CCchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC
Q 016621 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (386)
Q Consensus 32 ~~~~~~~~C~~~l~~~srsF~~a~~~Lp~~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G 111 (386)
.+++++++|+++++++|+|||+++++||+++|++|+++|+|||.+|||+|+++.+++.|..+|++|++.+.+.+|.|..|
T Consensus 8 ~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~ 87 (343)
T 3vj8_A 8 SLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMES 87 (343)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCC
T ss_pred cchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcCC
Confidence 46799999999999999999999999999999999999999999999999999888899999999999999888888745
Q ss_pred CCcchHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhhhhHHHhhhhhcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC
Q 016621 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED 191 (386)
Q Consensus 112 ~~~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~Gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~ 191 (386)
++.+++++..++.++.+|..++..++++|.+++++|++||++|+.++|+|++||+.|||+|||+||+|++++|+..+.++
T Consensus 88 ~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~ 167 (343)
T 3vj8_A 88 KEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED 167 (343)
T ss_dssp CSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC
T ss_pred ChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCcc
Confidence 66778899999999999999999999999999999999999999989999999999999999999999999999754222
Q ss_pred C---ChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 016621 192 L---APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVE 268 (386)
Q Consensus 192 ~---~~~~~A~~lG~aLQltNIlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~ 268 (386)
. ...+.|++||.|+|+||||||++||+. +||+|||.|+|.+||++.+||..+++++++++|+++++.+|+.|+.
T Consensus 168 ~~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 168 PLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 235899999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhcccchhhhhHHHHHHHHHHHhcCCCCCcCccccChHHHHHHHHHhcChhHHHHHHHHHHHHhcccCCC
Q 016621 269 DCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINK 348 (386)
Q Consensus 269 ~a~~yl~~l~~~~~~~f~aiP~~~AiatL~~~~~~~~vf~~~vki~k~~~~~l~~~~~~~~~v~~~~~~~~~~i~~~~~~ 348 (386)
+|+.|++.|+++++++||++|++||++||..+++|++||+++|||+|++++|++|+++|+++|+.+|++|+++|++|++|
T Consensus 245 ~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~~~v~~~rvkisr~~~~~l~~ra~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
T 3vj8_A 245 DVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPD 324 (343)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhCCccccCCCcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHhhCCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 016621 349 NDPNATKTLSRVEAIQKA 366 (386)
Q Consensus 349 ~dp~~~~~~~~~~~i~~~ 366 (386)
+||||.+|.++|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (343)
T 3vj8_A 325 SDPSSSKTRQIISTIRTQ 342 (343)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999874
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=5.8e-58 Score=443.99 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=245.1
Q ss_pred CchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCC
Q 016621 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (386)
Q Consensus 33 ~~~~~~~C~~~l~~~srsF~~a~~~Lp~~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~ 112 (386)
.+.++++|.++++++|+|||+++++||+++|++++++|+|||++|||+|+++.|.. |+||++.+.. .+. |.
T Consensus 10 ~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~-----L~~w~~~l~~---~~~-g~ 80 (293)
T 3acx_A 10 MDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF-----LNQIKEDIQS---IEK-YP 80 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH-----HHHHHHHHHH---HHH-CT
T ss_pred hHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH-----HHHHHHHHHH---HhC-CC
Confidence 35679999999999999999999999999999999999999999999999886643 9999999986 355 65
Q ss_pred C------cchHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhhhhHHHhhhh-hcCCCHHHHHHHHHhhhhHHHHHHHHHhc
Q 016621 113 K------EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (386)
Q Consensus 113 ~------~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~Gm~~dl~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~ 185 (386)
+ +++|++.+|..++++|..+.+.+.++|+ ||++|+. .+|+|++||+.|||+|||+||+|++++||
T Consensus 81 ~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g 152 (293)
T 3acx_A 81 YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLID--------TVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS 152 (293)
T ss_dssp TSCCCCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH--------HHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CcccCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 4 6789999999999999888888888887 9999997 58999999999999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 016621 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (386)
Q Consensus 186 ~~~~~~~~~~~~A~~lG~aLQltNIlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~ 265 (386)
... .....+.|++||.|+|+||||||++||+. +||+|||.|+|.+||++++|+.++++++++++++++++.+|+.
T Consensus 153 ~~~--~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 153 DHE--THQTYDVARRLGESLQLINILRDVGEDFE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp SSC--CHHHHHHHHHHHHHHHHHHHHHCHHHHHH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 632 13356899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhcccchhhhhHHHHHHHHHHHh-cCCCCCcCccccChHHHHHHHHHh
Q 016621 266 HVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (386)
Q Consensus 266 ~l~~a~~yl~~l~~~~~~~f~aiP~~~AiatL~~~~-~~~~vf~~~vki~k~~~~~l~~~~ 325 (386)
|+.+|+.++..+|.++ ..++.++..++.++|..+. +|++ |++++++++++++++++++
T Consensus 228 ~~~~a~~~~~~lp~~~-r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a 286 (293)
T 3acx_A 228 DFRDVMDQIKVFSIEA-QPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEI 286 (293)
T ss_dssp HHHHHHHTGGGSCTTH-HHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCHHH-HHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHH
Confidence 9999999999999876 3456677899999999885 7899 9999999999999999876
No 3
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=2.2e-56 Score=433.17 Aligned_cols=271 Identities=17% Similarity=0.217 Sum_probs=225.4
Q ss_pred CCchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC
Q 016621 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (386)
Q Consensus 32 ~~~~~~~~C~~~l~~~srsF~~a~~~Lp~~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G 111 (386)
.+.+++++|.++++++|+|||+++++||+++|++++++|+|||.+|||+|+.. +.+..+|++|++.+.. .+. |
T Consensus 10 ~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~---~~~~~~L~~~~~~l~~---~~~-g 82 (294)
T 4hd1_A 10 ELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFA---GDRMAALDAYEEELRR---AFA-G 82 (294)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCC---SCHHHHHHHHHHHHHH---HHH-T
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHH---Hhc-C
Confidence 35789999999999999999999999999999999999999999999999864 3467899999999986 355 6
Q ss_pred CCcchHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhhhhHHHhhhh-hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCC
Q 016621 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTE 190 (386)
Q Consensus 112 ~~~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~Gm~~dl~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~ 190 (386)
.+. +|++.+|..++.+|..+.+.+.++|+ ||++|+. ++|+|++||+.|||+|||+||+|+++||+..
T Consensus 83 ~~~-~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~--- 150 (294)
T 4hd1_A 83 EAT-TPAFRALQFTIATCNLPMEPFLRLIE--------ANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL--- 150 (294)
T ss_dssp CCC-SHHHHHHHHHHHHHTCCSHHHHHHHH--------HHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---
T ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---
Confidence 654 68999999999999999899999887 9999997 6899999999999999999999999999853
Q ss_pred CCChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 191 DLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 191 ~~~~~~~A~~lG~aLQltNIlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
+....+.|.++|.|||+|||+||++||+. +||+|||.|+|.+||++++|+..++.+++++.++.+++.+|+.||.++
T Consensus 151 ~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a 227 (294)
T 4hd1_A 151 DDERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEG 227 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33456899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhcccchhhhhHHHHHHHHHHHh-cCCCCCcCccccChHHHHHHHHHh
Q 016621 271 LKYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (386)
Q Consensus 271 ~~yl~~l~~~~~~~f~aiP~~~AiatL~~~~-~~~~vf~~~vki~k~~~~~l~~~~ 325 (386)
..++..+|..+. ..+.++..+....|..+. ++++||++|++++++++.++++++
T Consensus 228 ~~~~~~lp~~~r-~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~a 282 (294)
T 4hd1_A 228 RRLESLVPPRLA-RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSV 282 (294)
T ss_dssp GGGGGSSCHHHH-HHHHHHHHHHHHHHHHHHTTTTCCC------------------
T ss_pred HHHHHhCCHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHH
Confidence 999999997752 223444555566676664 789999999999999999999876
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=94.78 E-value=0.87 Score=44.00 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhhhhhccCCCCChhhhHHH-HHHHHHHHcccccccccCCCcchHHHHhHHHHHHHHhhcCHHHHHHHHH
Q 016621 64 NAVCIFYLVLRALDTVEDDTSIPTDVKVPI-LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIED 142 (386)
Q Consensus 64 ~av~alYaf~R~lD~I~D~~~~~~~~k~~~-L~~~~~~l~~~~~~~~~G~~~~~~l~~~~~~v~~~~~~l~~~~~~lI~~ 142 (386)
.++-.+..+.-..|||.|+..... ..+- =..|-.... ... | |-.+..+|..+.. .......+++.+
T Consensus 74 ~aiEliH~asLiHDDI~D~s~~RR--G~pt~h~~~G~~~A----Il~-G---D~L~~~a~~~l~~---~~~~~~~~~~~~ 140 (334)
T 3rmg_A 74 VSLELLHTASLVHDDVVDESTERR--GQLSVNAIFNNKVS----VLA-G---DYLLATSLVHAEQ---TNNYEIIRLVSS 140 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHH----HHH-H---HHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCCCCcC--CCccHHHhcChHHH----HHH-H---HHHHHHHHHHHHh---CCcHHHHHHHHH
Confidence 356677888888999988754310 0011 011111110 000 1 1122223333222 112344556667
Q ss_pred HHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchH
Q 016621 143 ITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYL 215 (386)
Q Consensus 143 i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ 215 (386)
.+..|..|-..|+.. .-.|.++|..-.++=.|....+.+++-.. +|.+. .....++.++|+|+|+.+=+-|+.
T Consensus 141 ~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 141 LGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 777888898888863 24688888877766666665665554322 22211 123478999999999999888873
Q ss_pred ----------hhhhcCCCCCccccHHHHHhccCCh-----hhhh-cccCCHHHHH----------HHHHHHHHHHHHHHH
Q 016621 216 ----------EDINEIPKCRMFWPREIWSKYVNKL-----EDLK-YEENSDKAVQ----------CLNDMVTNALMHVED 269 (386)
Q Consensus 216 ----------ED~~e~~~GR~ylP~e~l~~~g~~~-----~dl~-~~~~~~~~~~----------~l~~lv~~A~~~l~~ 269 (386)
.|+. .|.+=||.=..-+..... .++. .+..++.-.. .+......+..+..+
T Consensus 221 ~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~ 297 (334)
T 3rmg_A 221 DSKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKK 297 (334)
T ss_dssp CC------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 7888 688888874322222111 1111 1222222111 123334556677777
Q ss_pred HHHHHHhcchh
Q 016621 270 CLKYMSALRDH 280 (386)
Q Consensus 270 a~~yl~~l~~~ 280 (386)
|...+..+|+.
T Consensus 298 A~~~L~~lp~~ 308 (334)
T 3rmg_A 298 AFDLLAALPDS 308 (334)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHHhCCCc
Confidence 77777777744
No 5
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=94.65 E-value=0.45 Score=46.57 Aligned_cols=142 Identities=12% Similarity=0.086 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQlt 208 (386)
...+++.+.+..|..|-..|+.. ...|+++|..-.++=.|......+++-.. +|... .....++.++|+|+|+.
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~ 239 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIV 239 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677888898888862 23677887766555555555555554322 22111 11247889999999999
Q ss_pred HHHhch-----------HhhhhcCCCCCccccHHHHHhccCCh-----hhhhc-ccCCHH-HHHH---------HHHHHH
Q 016621 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKL-----EDLKY-EENSDK-AVQC---------LNDMVT 261 (386)
Q Consensus 209 NIlRD~-----------~ED~~e~~~GR~ylP~e~l~~~g~~~-----~dl~~-~~~~~~-~~~~---------l~~lv~ 261 (386)
+=+-|+ +.|+. .|.+-||.=..-+.. ++ .+++. +..++. ...+ +..--.
T Consensus 240 DDilD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~ 315 (360)
T 3lmd_A 240 DDIIDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315 (360)
T ss_dssp HHHHHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHH
Confidence 887777 46777 588888874322221 11 11121 112222 1111 333445
Q ss_pred HHHHHHHHHHHHHHhcchh
Q 016621 262 NALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 262 ~A~~~l~~a~~yl~~l~~~ 280 (386)
.+..+..+|...+..+|+.
T Consensus 316 ~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 316 EVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp HHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 5677777888888877754
No 6
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=94.59 E-value=2.2 Score=40.48 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhhh--c--CCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCChhHHHHHHHHHHHHHHHH
Q 016621 136 YQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNII 211 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~--~--~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~~~~~~~A~~lG~aLQltNIl 211 (386)
..+++.+.+.+|..|-..|+.. . ..|+++|..-.++=.|....+.+.+-...+..+.....++.++|+|+|+.+=+
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ 191 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDY 191 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666787898888852 2 56899998877766665555555554321111233458999999999998877
Q ss_pred hch-----------HhhhhcCCCCCccccHHHHHhccCChhhh---h-cccCCHHHHH-H---------HHHHHHHHHHH
Q 016621 212 RDY-----------LEDINEIPKCRMFWPREIWSKYVNKLEDL---K-YEENSDKAVQ-C---------LNDMVTNALMH 266 (386)
Q Consensus 212 RD~-----------~ED~~e~~~GR~ylP~e~l~~~g~~~~dl---~-~~~~~~~~~~-~---------l~~lv~~A~~~ 266 (386)
-|+ +.|+. .|.+-||.=..-+.......+ . .+...+.... + +...-..+..+
T Consensus 192 ld~~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~ 268 (301)
T 2q80_A 192 ANLHSKEYSENKSFCEDLT---EGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKEL 268 (301)
T ss_dssp HHHHCC------CTTHHHH---HTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhcCChhhhCCCccchhh---cCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 776 36777 588888874322322111111 1 1222223222 1 12333446666
Q ss_pred HHHHHHHHHhcchh
Q 016621 267 VEDCLKYMSALRDH 280 (386)
Q Consensus 267 l~~a~~yl~~l~~~ 280 (386)
..+|...+..+|..
T Consensus 269 ~~~A~~~L~~l~~~ 282 (301)
T 2q80_A 269 EAKAYKQIDARGGN 282 (301)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCC
Confidence 67777777666644
No 7
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=94.57 E-value=1.9 Score=41.37 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCCC-----cchHHHHhHHHHHHHHh-hc-CH
Q 016621 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK-----EYKVLMDQFHHVSTAFL-EL-GK 134 (386)
Q Consensus 62 lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~-----~~~~l~~~~~~v~~~~~-~l-~~ 134 (386)
..-+|-.+..+.-.-|||.|+..... .+ + .|+.. | |+. .|-.+..+|..+..... .+ +.
T Consensus 64 ~A~avEliH~asLihDDi~D~s~~RR-G~-p---t~h~~-------~--G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~ 129 (330)
T 1wmw_A 64 AATALELFQNWVLVHDDIEDGSEERR-GR-P---ALHRL-------H--PMPLALNAGDAMHAEMWGLLAEGLARGLFPP 129 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEET-TE-E---CHHHH-------S--CHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHcccccCCCCCC-CC-C---ccccc-------c--CchHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 44556677888888999998764310 00 0 01111 1 111 11122223333332211 11 13
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh-----cCCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCC-CCChhHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTE-DLAPDSLSNSMGLFLQ 206 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~-----~~~t~~dl~~Yc~~VAG~V-G~ll~~l~~~-~~~~-~~~~~~~A~~lG~aLQ 206 (386)
...+++.+.+..|..|-..|+.. .-.|+++|..-+++=.|.. ..+.+.+-.. +|.. ......++.++|+|+|
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQ 209 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQ 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555666677888898888864 3568888887776666665 5555554322 2211 1114588999999999
Q ss_pred HHHHHhch----------HhhhhcCCCCCccccH
Q 016621 207 KTNIIRDY----------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 207 ltNIlRD~----------~ED~~e~~~GR~ylP~ 230 (386)
+.+=+-|+ +.|+. .|.+=||.
T Consensus 210 i~DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~ 240 (330)
T 1wmw_A 210 IVDDVLNLEGGEAYGKERAGDLY---EGKRTLIL 240 (330)
T ss_dssp HHHHHHHHSCSCCCSSSTTHHHH---HTCCCHHH
T ss_pred HHHccCcccCCcccCCCcCchhh---CCCCCHHH
Confidence 99888886 57888 58888887
No 8
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=94.44 E-value=1.5 Score=42.69 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhc---------------CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhH
Q 016621 136 YQDAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDS 196 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~~---------------~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~ 196 (386)
..+++.+.+..|..|-..|+... -.|.++|..-+.+=.|....+.+++-.. +|... .....
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~ 212 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWN 212 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455566667888988888632 4588888776666656555555554322 22211 11247
Q ss_pred HHHHHHHHHHHHHHHhch-----------HhhhhcCCCCCc-cccHHHHHhccCChhh------hh-cccCCHH-HHHH-
Q 016621 197 LSNSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLED------LK-YEENSDK-AVQC- 255 (386)
Q Consensus 197 ~A~~lG~aLQltNIlRD~-----------~ED~~e~~~GR~-ylP~e~l~~~g~~~~d------l~-~~~~~~~-~~~~- 255 (386)
++.++|+|+|+.+=+-|+ +.|+. .|.+ =||.= ..-...++++ ++ ++..++. ...+
T Consensus 213 ~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i-~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~ 288 (358)
T 4dhd_A 213 FGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVA-VALSHLGEGERRRLLEILAREVVEEADVREAV 288 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHH-HHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHH-HHHHhCChhhHHHHHHHHcCCCCCHHHHHHHH
Confidence 889999999998877776 57888 6888 88873 2222222211 11 1222222 1111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 256 --------LNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 256 --------l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
+......+..+..+|...+..+|+.
T Consensus 289 ~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 289 ALLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2223455677778888888777743
No 9
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=94.44 E-value=0.87 Score=43.30 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNII 211 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~lG~aLQltNIl 211 (386)
...+++.+.+..|..|-..|+.. ...|+++|..-+++=.|......+.+-.. +|.+......++.++|+|+|+.+=+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~ 206 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDI 206 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677888898889862 23789998877666666555555544322 2222222348899999999999888
Q ss_pred hchH----------hhhhcCCCCCccccH
Q 016621 212 RDYL----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 212 RD~~----------ED~~e~~~GR~ylP~ 230 (386)
-|+. .|+. .|.+-||.
T Consensus 207 lD~~~d~~~GK~~g~Dl~---egK~T~p~ 232 (299)
T 1v4e_A 207 MDFAGMEKIGKDGFLDLK---NGVASFPL 232 (299)
T ss_dssp HHHTTCCSCCTTSSCCCT---TTTCCHHH
T ss_pred HHccCccccCCCcchHhh---CCCchHHH
Confidence 8764 5566 57777886
No 10
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=94.39 E-value=0.79 Score=44.45 Aligned_cols=142 Identities=12% Similarity=0.095 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQl 207 (386)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|....+.+++-.. +|... .....++.++|+|+|+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 218 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQI 218 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667788898888853 25788888776666556555555554332 22211 1124788999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccHHHHHhccCChh------hhhc-cc-CCHHHHHH---------HHHH
Q 016621 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKY-EE-NSDKAVQC---------LNDM 259 (386)
Q Consensus 208 tNIlRD~-----------~ED~~e~~~GR~ylP~e~l~~~g~~~~------dl~~-~~-~~~~~~~~---------l~~l 259 (386)
.+=+-|+ +.|+. .|.+=||.= ..-...+.+ +++. +. ..+....+ +...
T Consensus 219 ~DD~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i-~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a 294 (341)
T 3mzv_A 219 VDDLLDYGGKSAEIGKNTGDDFR---ERKLTMPVI-KAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEAT 294 (341)
T ss_dssp HHHHHHC----------CCHHHH---TTCCCHHHH-HHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhcCCCCCcccc---cCchhHHHH-HHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHH
Confidence 9888776 46888 689989973 332222221 1111 11 11222222 3344
Q ss_pred HHHHHHHHHHHHHHHHhcchh
Q 016621 260 VTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 260 v~~A~~~l~~a~~yl~~l~~~ 280 (386)
...+..+..+|...+..+|+.
T Consensus 295 ~~~a~~~~~~A~~~L~~lp~~ 315 (341)
T 3mzv_A 295 RLAAIGWTDTARKALAKLPDH 315 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 455677788888888887754
No 11
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=93.75 E-value=3.2 Score=39.75 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQl 207 (386)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|....+.+++-.. +|.+. .....++.++|+|+|+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi 209 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQI 209 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667788898888862 25688998877766666666666655432 22211 1123789999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccH
Q 016621 208 TNIIRDY-----------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 208 tNIlRD~-----------~ED~~e~~~GR~ylP~ 230 (386)
.+=+-|+ +.|+. .|.+=||.
T Consensus 210 ~DD~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~ 240 (325)
T 3aqb_B 210 IDDILDYTSDEATLGKPVGSDIR---NGHITYPL 240 (325)
T ss_dssp HHHHHHHHSCHHHHSSCTTHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhcCCccchHhh---CCCccHHH
Confidence 8877776 56787 68888887
No 12
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=93.55 E-value=3.1 Score=40.38 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhc-------------------CCCHHHHHHHHHhhhhHH-HHHHHHH---hcc-cCCCC
Q 016621 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKL---FYA-SGTED 191 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~~-------------------~~t~~dl~~Yc~~VAG~V-G~ll~~l---~~~-~~~~~ 191 (386)
..+++.+.+..|..|-..|+... -.|+++|..=+++=.|.. ....+.+ ++. ...+.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 44566667778888988888532 257888877666655554 3343333 221 11111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016621 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 192 -~~~~~~A~~lG~aLQltNIlRD~~----------ED~~e~~~GR~ylP~ 230 (386)
.....++.++|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 232 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~ 278 (362)
T 1yhl_A 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLA 278 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHH
Confidence 123478999999999998888874 6787 68998987
No 13
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=93.29 E-value=3.9 Score=40.32 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhh------------------h-----c----CCCHHHHHHHHHhhhhHH-H---HHHHHHh
Q 016621 136 YQDAIEDITKRMGAGMAKFIC------------------K-----E----VESIDDYDEYCYYVAGLV-G---LGLSKLF 184 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~------------------~-----~----~~t~~dl~~Yc~~VAG~V-G---~ll~~l~ 184 (386)
..+++.+.+..|..|-..|+. . . -.|+++|..-+.+=.|.. . ..+..++
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 345566667788889888882 1 1 357788866555444433 1 1222233
Q ss_pred cccCCCC--C-ChhHHHHHHHHHHHHHHHHhch----------HhhhhcCCCCCccccH
Q 016621 185 YASGTED--L-APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 185 ~~~~~~~--~-~~~~~A~~lG~aLQltNIlRD~----------~ED~~e~~~GR~ylP~ 230 (386)
+....+. . ....++.++|+|+|+.+=+-|+ +.|+. .|.+=||.
T Consensus 259 ag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~ 314 (395)
T 2ihi_A 259 AGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPL 314 (395)
T ss_dssp TTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHH
Confidence 3221111 1 1237899999999999988887 56888 68998887
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=93.21 E-value=2.1 Score=40.98 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCCCcchHHHHhHHHHHHHH---hhcCHHHHH
Q 016621 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAF---LELGKGYQD 138 (386)
Q Consensus 62 lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~~~~~l~~~~~~v~~~~---~~l~~~~~~ 138 (386)
..-++-.+....-.-|||.|+... ++-. ..|+.. | |+.. .++..-.-....| ........+
T Consensus 62 ~A~aiEliH~asLiHDDi~D~s~~----RRG~-pt~h~~-------~--G~~~--AIl~GD~L~~~a~~~l~~~~~~~~~ 125 (315)
T 3tc1_A 62 LCTIVEMIQTASLLHDDVIDKATM----RRKL-PSINAL-------F--GNFN--AVMLGDVFYSKAFFELSKMGELIAQ 125 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTC------------------------------CCSH--HHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCC----cCCC-ccHHHH-------h--CchH--HHHHHHHHHHHHHHHHHHCcHHHHH
Confidence 345666778888889999887532 1111 112211 1 3221 1111111111112 222344455
Q ss_pred HHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhch
Q 016621 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDY 214 (386)
Q Consensus 139 lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~lG~aLQltNIlRD~ 214 (386)
++.+.+..|..|-..|+.. .-.|.++|..-+.+=.|....+.+.+-.. +|........++.++|+|+|+.+=+-|+
T Consensus 126 ~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~ 205 (315)
T 3tc1_A 126 ALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDI 205 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666677888898888862 25688888765555555555555554332 2222112347899999999999988887
Q ss_pred -----------HhhhhcCCCCCccccHH
Q 016621 215 -----------LEDINEIPKCRMFWPRE 231 (386)
Q Consensus 215 -----------~ED~~e~~~GR~ylP~e 231 (386)
+.|+. .|.+=||.=
T Consensus 206 ~~d~~~~GK~~g~Dl~---egK~T~p~i 230 (315)
T 3tc1_A 206 TQDAKTLGKPNFSDFK---EGKTTLPYL 230 (315)
T ss_dssp SCCTTCCCCCCCCTGG---GTCCCHHHH
T ss_pred cCCHHHhCCChhhHHH---cCChhHHHH
Confidence 56887 588889973
No 15
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=93.19 E-value=2.4 Score=39.89 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--c--CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 209 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~--~--~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~lG~aLQltN 209 (386)
...+++.+.+..|..|-..|+.. . -.|.++|..-..+=.|......+.+-.. +|........++..+|+|+|+.+
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 213 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYD 213 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Confidence 44455556667888898888852 2 5789999888777666666665554322 22121234589999999999999
Q ss_pred HHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016621 210 IIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (386)
Q Consensus 210 IlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~ 278 (386)
=+-|+--|..+ .|.-. | +|+. ..+-.....+......+..+..+|...+..++
T Consensus 214 D~lD~~~d~~~--~GK~~---------g---~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 266 (284)
T 2ftz_A 214 DLXDILGSFEK--VGKDL---------G---KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEG 266 (284)
T ss_dssp HHHHHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhcCCHHh--hCCCc---------c---hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88898777653 34311 0 1222 12222222344445667777777777777776
No 16
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=92.73 E-value=2.1 Score=40.91 Aligned_cols=130 Identities=9% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHHHH-----HhhhhHHHhhhhh--c-CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC--CCC---CChhHHHHHH
Q 016621 136 YQDAIEDIT-----KRMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SG--TED---LAPDSLSNSM 201 (386)
Q Consensus 136 ~~~lI~~i~-----~~m~~Gm~~dl~~--~-~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~--~~~---~~~~~~A~~l 201 (386)
..+++..+. ..|..|-..|+.. . -.|.++|..-..+=.|......+.+ .. +| .+. .....++.++
T Consensus 144 ~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~l 222 (313)
T 3lom_A 144 VVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHI 222 (313)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHH
Confidence 344555443 3577788888863 2 6789999877655555555566665 33 22 111 1234789999
Q ss_pred HHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 202 GLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 202 G~aLQltNIlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
|+|+|+.+=+-|+--|..+ .|. | . -+|+..+..+=...-.+..--..+..+..+|...+..+++.
T Consensus 223 GlaFQI~DDilD~~gd~~~--~GK---~------~---g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQI--LGK---G------R---SSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred HHHHHHHHHHHhccCCHHh--hCC---C------C---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999988887543321 122 0 0 12343444443333345555677788888888888887754
No 17
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=92.71 E-value=3.4 Score=39.24 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=72.1
Q ss_pred HhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC---CCC-CChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG---TED-LAPDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 145 ~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~---~~~-~~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
..|..|-..|+. ....|.++|..-..+=.|....+.+.+-.. +| .+. .....++..+|+|+|+.+=+-|+--|
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 367778888885 245688888876655555445555544322 12 111 12347899999999999877777544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
-.+ .|. | . -+|+..+..+=.....+..--..|..+..+|...+..+|..
T Consensus 238 ~~~--~GK---~------~---g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 238 TET--LGK---P------Q---GSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHH--hCC---C------c---chHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 331 222 1 1 14555555555555566777788888899999988888754
No 18
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=92.71 E-value=3.2 Score=39.86 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=67.5
Q ss_pred HhhhhHHHhhhhhc---CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 145 KRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 145 ~~m~~Gm~~dl~~~---~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
..|..|-..|+... -.|.++|..-..+=.|......+.+-.. +|... .....++..+|+|+|+.+=+-|+--|
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35778888888632 5688888776544444444555444322 22111 12337899999999999988877433
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
..+ .|.- .| +|+.++..+=.....+..--..+..+..+|...+..++..
T Consensus 260 ~~~--~GK~---------~g---~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 260 AKD--LGKN---------VH---KDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHH--hCCC---------cc---hHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 221 1110 01 2444444444344445555677888888888888888754
No 19
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=92.50 E-value=2.9 Score=39.75 Aligned_cols=121 Identities=8% Similarity=-0.034 Sum_probs=67.5
Q ss_pred HhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 145 ~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
..|..|-..|+.. .-.|.++|..-..+=.|....+.+.+-.. +|... .....++.++|+|+|+.+=+-|+--|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 3577788888852 35688888876544444445555544322 22211 123478999999999999888875443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~ 279 (386)
.+ .|.- . -+|+..+..+=.....+..--..+..+..+|...+..+|+
T Consensus 236 ~~--~GK~---------~---g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 236 AD--LGKK---------V---GRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp -----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--hCCC---------h---hhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 2221 1 1345455555444445566667777788888888888864
No 20
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=92.40 E-value=5.8 Score=38.75 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhc--------CCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 016621 136 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~~--------~~t~~dl~~Yc~~VAG~V-G~ll~~l~~~-~~-~~~---~~~~~~A~~l 201 (386)
..+++.+.+..|..|-..|+... -.|+++|..-..+=.|.. ..+.+.+-.. +| ... .....++..+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~l 256 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 256 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 45566677778888998898632 158888888776655555 3333333211 22 111 1224789999
Q ss_pred HHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016621 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 202 G~aLQltNIlRD~~----------ED~~e~~~GR~ylP~ 230 (386)
|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 257 G~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~ 292 (374)
T 2qis_A 257 GEFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLV 292 (374)
T ss_dssp HHHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHH
Confidence 99999998888874 5777 68998987
No 21
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=92.29 E-value=1.9 Score=40.95 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=74.1
Q ss_pred HhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 145 ~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
..|..|-..|+. ....|.++|..-..+=.|......+.+-.. +|.+. .....++.++|+|+|+.+=+-|+--|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567788888885 235788998887777666665555554322 22111 123378999999999999888886554
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
.+ .|.-. -+|+..+..+-.....+..-...+..+..+|...+..+|+.
T Consensus 228 ~~--~GK~~------------g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 228 AK--LGKKV------------GSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HH--hCCCc------------chHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 32 23210 13444455454444455666677888888898888888743
No 22
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=91.87 E-value=8.2 Score=37.16 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHH
Q 016621 134 KGYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQ 206 (386)
Q Consensus 134 ~~~~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~lG~aLQ 206 (386)
....+++.+.+..|..|-..|+.. .-.|+++|..=.++=.|......+.+-.. +|.... ....++.++|+|+|
T Consensus 152 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 231 (348)
T 3apz_A 152 TEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQ 231 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 344556666777888898888852 24578887665555444444444444322 222111 12368899999999
Q ss_pred HHHHHhchH-----------hhhhcCCCCCccccHH
Q 016621 207 KTNIIRDYL-----------EDINEIPKCRMFWPRE 231 (386)
Q Consensus 207 ltNIlRD~~-----------ED~~e~~~GR~ylP~e 231 (386)
+.+=+-|+- .|+. .|.+=||.=
T Consensus 232 i~DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l 264 (348)
T 3apz_A 232 LIDDILDFTGTSASLGKGSLSDIR---HGVITAPIL 264 (348)
T ss_dssp HHHHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHH
T ss_pred HHHHHhhccCChhhcCCcchhhHh---CCChhHHHH
Confidence 999888874 5677 588888873
No 23
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=91.59 E-value=5.2 Score=38.51 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhHHHhhhhh--c----CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCC--CCChhHHHHHHHHHHHH
Q 016621 137 QDAIEDITKRMGAGMAKFICK--E----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE--DLAPDSLSNSMGLFLQK 207 (386)
Q Consensus 137 ~~lI~~i~~~m~~Gm~~dl~~--~----~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~--~~~~~~~A~~lG~aLQl 207 (386)
.+++.+.+..|..|-..|+.. . ..|+++|..-+++=.|....+.+++-.. +|.. ......++.++|+|+|+
T Consensus 133 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi 212 (340)
T 2e8v_A 133 ITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQI 212 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344445556777788888852 1 4589999887776666655555554432 2221 12234899999999999
Q ss_pred HHHHhchH-----------hhhhcCCCCCccccH
Q 016621 208 TNIIRDYL-----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 208 tNIlRD~~-----------ED~~e~~~GR~ylP~ 230 (386)
.+=+-|+- .|+. .|.+=||.
T Consensus 213 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~ 243 (340)
T 2e8v_A 213 RDDYLNLKDFQMSSEKGFAEDIT---EGKLSFPI 243 (340)
T ss_dssp HHHHHHHHC-----CCCTTHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhhCCCchhhHh---cCCchHHH
Confidence 98888773 6777 58888886
No 24
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=91.57 E-value=3.4 Score=39.09 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=70.8
Q ss_pred HhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhccc--CCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 145 ~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~--~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
..|..|-..|+.. ...|.++|..-..+=.|......+.+-... |... .....++.++|+|+|+.+=+-|+--|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4677888888852 256888888777555555555555443211 1111 11237899999999999877776544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~ 279 (386)
..+ .|. | .-+|+..+..+--....+......+..+..+|...+..++.
T Consensus 232 ~~~--~GK---~---------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TAT--LGK---R---------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHH--HSS---C---------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH--hCC---C---------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 121 0 01344444444333334445556677777788877777765
No 25
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=91.53 E-value=6.4 Score=38.31 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhc--------CCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 016621 136 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~~--------~~t~~dl~~Yc~~VAG~V-G~ll~~l~~~-~~-~~~---~~~~~~A~~l 201 (386)
..+++.+.+..|..|-..|+... -.|+++|..=+.+=.|.. ....+.+-.. +| ... .....++.++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~l 249 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEM 249 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 44566677778888988898531 358888876655544444 3333222111 12 111 1234789999
Q ss_pred HHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016621 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 202 G~aLQltNIlRD~~----------ED~~e~~~GR~ylP~ 230 (386)
|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 250 G~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~ 285 (367)
T 1uby_A 250 GEYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLV 285 (367)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHH
Confidence 99999999888875 5777 68999997
No 26
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=91.53 E-value=6.8 Score=37.30 Aligned_cols=120 Identities=16% Similarity=0.028 Sum_probs=68.9
Q ss_pred HhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 145 ~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
..|..|-..|+.. .-.|.++|..-..+=.|....+.+.+-.. +|.... ....++..+|+|+|+.+=+-|+--|-
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 3577788888852 35688888876655555555555544221 222211 22478999999999998887774433
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~ 278 (386)
.+ ++|- .-+|+..+..+=.....+..--..+..++.+|...+..++
T Consensus 235 ~~------------~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 235 AE------------MGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ------------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HH------------hCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 21 1110 0134555555544555555555677777788887777643
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=91.44 E-value=2.2 Score=40.97 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=72.0
Q ss_pred HhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCCC---ChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TEDL---APDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 145 ~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~-~~~~---~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
..|..|-..|+.. .-.|.++|..-.++=.|......+.+-.. +| .+.. ....++.++|+|+|+.+=+-|+--|
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3577888888862 36788999887666666655665554432 22 1111 1237899999999999988877544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
..+ .|. | .| +|+..+..+=...-.+..--..|..++.+|...+..++..
T Consensus 238 ~~~--~GK---~------~g---~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 TQT--LGK---T------RG---KDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp -----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHH--hCC---C------cc---chhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 321 122 0 11 3444444444444455666677888888888888888764
No 28
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=90.89 E-value=13 Score=36.48 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhhHHHhhhhh-------------------cCCCHHHHHHHHHhhhhHH-HHHHHH---HhcccCCCC-
Q 016621 136 YQDAIEDITKRMGAGMAKFICK-------------------EVESIDDYDEYCYYVAGLV-GLGLSK---LFYASGTED- 191 (386)
Q Consensus 136 ~~~lI~~i~~~m~~Gm~~dl~~-------------------~~~t~~dl~~Yc~~VAG~V-G~ll~~---l~~~~~~~~- 191 (386)
..+++.+.+..|..|-..|+.. .-.|+++|..-+++=.|.. ....+. +++....+.
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~ 259 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 3455666667788898888853 1257788876555554443 333332 232211111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016621 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (386)
Q Consensus 192 -~~~~~~A~~lG~aLQltNIlRD~~----------ED~~e~~~GR~ylP~ 230 (386)
.....++..+|+|+|+.+=+-|+- .|+. .|.+=||-
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pv 306 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLA 306 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHH
Confidence 113478999999999999888874 5888 69998886
No 29
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=90.70 E-value=0.99 Score=42.89 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=63.7
Q ss_pred HhhhhHHHhhhhh----cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhchHhhhh
Q 016621 145 KRMGAGMAKFICK----EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (386)
Q Consensus 145 ~~m~~Gm~~dl~~----~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~lG~aLQltNIlRD~~ED~~ 219 (386)
..|..|-..|+.. .-.|.++|..-..+=.|....+.+++-.. +|.+......++..+|+|+|+.+=+-|+--|..
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4577788888852 35688898876666555555555444322 222222345899999999999875555532221
Q ss_pred cCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 220 e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
.++|- .-+|+.++..+=.....+..--..+..++.+|...+..++..
T Consensus 227 ------------~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 227 ------------AAGKR--LGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp ----------------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred ------------HhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11110 012333333333333333444466777778888877777754
No 30
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=90.63 E-value=2.3 Score=40.82 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=69.9
Q ss_pred hhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 146 RMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 146 ~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~-~~~---~~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
.|..|-..|+.. ...|.++|..-..+=.|..-...+.+-.. +| .+. .....++.++|+|+|+.+=+-|+--|-
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 477788888852 35788888876655555545555544322 22 111 122478899999999999888874443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
.+ .|. | . -+|+..+..+=...-.+..--..|..+..+|...+..+|+.
T Consensus 232 ~~--~GK---~------~---g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 ET--LGK---T------Q---FSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred Hh--hCC---C------c---chHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 21 122 1 0 13444455454444456666777888888888888888753
No 31
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=90.57 E-value=2.9 Score=39.55 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQlt 208 (386)
...+++.+.+..|..|-..|+.. ...|.++|..-.++-.|......+.+-.. +|.+. .....++.++|+|+|+.
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~ 206 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIV 206 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566788888888852 24567777665655555555555554322 22211 12347899999999999
Q ss_pred HHHhchHh-----hhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 209 NIIRDYLE-----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 209 NIlRD~~E-----D~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
+=+-|+-- |.. .|.+-||. +.... ..+ ...+..-...|..+..+|...+..+|+.
T Consensus 207 DDilD~~~~~~gkd~~---~gk~Tlp~-l~al~-----------~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 207 DDILEFLEVVEGKESK---FTSETLPH-IYMKS-----------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHHHHHHC----------CCHHH-HHTTT-----------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhcCCccCCCcc---cCcccHHH-HHHHh-----------cCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 98888854 444 46666775 22211 010 0125555667788888888888888754
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=90.39 E-value=2.2 Score=41.26 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=67.4
Q ss_pred HhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 145 ~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
..|..|-..|+. ..-.|.++|..-.++=.|......+.+-.. +|.+. .....++.++|+|+|+.+=+-|+--|.
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567788888885 235788898887776666655555544321 22111 123378999999999998888874433
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~ 279 (386)
.+ .|. | . -+|+..+..+--....+......+..+..+|...+..++.
T Consensus 272 ~~--~GK---~------~---g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 AT--MGK---A------T---GKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HH--hCC---C------c---chHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 21 111 0 0 1233333333333333455566677777888877777764
No 33
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=90.24 E-value=5.4 Score=38.39 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 016621 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (386)
Q Consensus 137 ~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltN 209 (386)
.+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|....+.+.+-.. +|.+. .....++.++|+|+|+.+
T Consensus 139 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~D 218 (342)
T 1wy0_A 139 LEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWD 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788898888852 24588888877776666666665554322 22211 123478999999999998
Q ss_pred HHhch-----------HhhhhcCCCCCccccHH
Q 016621 210 IIRDY-----------LEDINEIPKCRMFWPRE 231 (386)
Q Consensus 210 IlRD~-----------~ED~~e~~~GR~ylP~e 231 (386)
=+-|+ +.|+. .|.+=||.=
T Consensus 219 D~lD~~~d~~~~GK~~g~Dl~---egK~Tlp~i 248 (342)
T 1wy0_A 219 DVLDLIADEKKLGKPVGSDIR---KGKKTLIVA 248 (342)
T ss_dssp HHHHHHSCHHHHTSCSCHHHH---HTCCCHHHH
T ss_pred HHHhccCChhhhCCCchhHHh---CCCCcHHHH
Confidence 77776 37777 588888873
No 34
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=90.05 E-value=10 Score=37.10 Aligned_cols=90 Identities=14% Similarity=0.009 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHH
Q 016621 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNI 210 (386)
Q Consensus 139 lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~V-G~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNI 210 (386)
++.+....|..|-..|+.. ...|.++|..-..+=.|.. ....+.+-.. +|... .....++.++|+|+|+.+=
T Consensus 179 ~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 179 AWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677788888852 3458888877555444443 2333332111 12111 1223789999999999887
Q ss_pred Hhch-----------HhhhhcCCCCCccccHH
Q 016621 211 IRDY-----------LEDINEIPKCRMFWPRE 231 (386)
Q Consensus 211 lRD~-----------~ED~~e~~~GR~ylP~e 231 (386)
+-|+ +.|+. .|.+=||.=
T Consensus 259 iLd~~gd~~~~GK~~g~Dl~---egK~T~p~i 287 (380)
T 3lk5_A 259 LLGVFGDPAITGKPAGDDIR---EGKRTVLLA 287 (380)
T ss_dssp HHHHHSCHHHHSSCTTHHHH---TTCCCHHHH
T ss_pred HHhccCChhhhCCCchhhHh---cCCchHHHH
Confidence 7776 56888 688888863
No 35
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=89.56 E-value=2.5 Score=40.24 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=71.1
Q ss_pred hhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCC-CC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016621 146 RMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-ED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (386)
Q Consensus 146 ~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~-~~---~~~~~~A~~lG~aLQltNIlRD~~ED~ 218 (386)
.|..|-..|+.. ...|.++|..-+.+=.|....+.+.+-.. +|. +. .....++.++|+|+|+.+=+-|+--|-
T Consensus 153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 232 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 377788888852 35788888877665555555555544322 222 11 123478999999999999888875544
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 219 ~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
.+ .|. | . -+|+..+..+=.....+..--..+..++.+|...+..+++.
T Consensus 233 ~~--~GK---~------~---g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 233 AT--LGK---R------Q---GADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HH--C------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HH--hCC---C------c---ccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 32 222 1 0 13444444444444455666677888888888888888753
No 36
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=88.66 E-value=7.1 Score=37.82 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 016621 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (386)
Q Consensus 137 ~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltN 209 (386)
.+++.+.+..|..|-..|+.. .-.|.++|..=.++=.|......+.+-.. +|.+. .....++.++|+|+|+.+
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~D 224 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777898888852 25688998876666556555555554322 22211 112478999999999998
Q ss_pred HHhch-----------HhhhhcCCCCCccccHH
Q 016621 210 IIRDY-----------LEDINEIPKCRMFWPRE 231 (386)
Q Consensus 210 IlRD~-----------~ED~~e~~~GR~ylP~e 231 (386)
=+-|+ +.|+. .|.+=||.=
T Consensus 225 D~ld~~gd~~~~GK~~g~Dl~---egK~Tlpvi 254 (352)
T 3nf2_A 225 DLLGIWGDPDATGKQTWSDLR---QRKKSLPVV 254 (352)
T ss_dssp HHHHHHCCHHHHSSCTTHHHH---TTCCCHHHH
T ss_pred HHHhccCChhhhCCCcCcccc---cCCccHHHH
Confidence 77776 57888 689888873
No 37
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=88.45 E-value=5.8 Score=38.13 Aligned_cols=93 Identities=17% Similarity=0.046 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQl 207 (386)
...+.+.+.+..|..|-..|+.. .-.|.++|..-+.+=.|....+.+.+-.. +|... .....++.++|+|+|+
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 222 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQM 222 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666787888778753 35678887766555555555555544322 22211 1123788899999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccH
Q 016621 208 TNIIRDY-----------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 208 tNIlRD~-----------~ED~~e~~~GR~ylP~ 230 (386)
.+=+-|+ +.|+. .|.+=||.
T Consensus 223 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~ 253 (334)
T 3pko_A 223 LDDILDYAGDPKRTQKPVLEDLR---SGVYSLPL 253 (334)
T ss_dssp HHHHHHHCSCTTSCCHHHHHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhcCCCCCCccc---cCchhHHH
Confidence 9877776 56888 68998887
No 38
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=88.06 E-value=7.1 Score=37.70 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQl 207 (386)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++-.|......+++-.. +|... .....++.++|+|+|+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 230 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQL 230 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667788898888863 25788998877766666666665555322 22211 1223789999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccHHHHHhccCChh-h----hhc-c----cCCHHHHHH------HHHHH
Q 016621 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE-D----LKY-E----ENSDKAVQC------LNDMV 260 (386)
Q Consensus 208 tNIlRD~-----------~ED~~e~~~GR~ylP~e~l~~~g~~~~-d----l~~-~----~~~~~~~~~------l~~lv 260 (386)
.+=+-|+ +.|+. .|.+=||.=..-+.+.+.+ + +.. + +.-+.+++. +..-.
T Consensus 231 ~DD~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~ 307 (345)
T 3oyr_A 231 ADDALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATL 307 (345)
T ss_dssp HHHHTTC----------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 9988886 36777 5888888733222222111 1 111 1 111222322 23445
Q ss_pred HHHHHHHHHHHHHHHhcchh
Q 016621 261 TNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 261 ~~A~~~l~~a~~yl~~l~~~ 280 (386)
..+..+..+|...+..+|+.
T Consensus 308 ~~a~~~~~~A~~~L~~lp~~ 327 (345)
T 3oyr_A 308 DLAADYADKAKAALAMFPAN 327 (345)
T ss_dssp HHHHHHHHHHHHTTTTSCSS
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 56677778888777777754
No 39
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=87.79 E-value=22 Score=35.26 Aligned_cols=200 Identities=12% Similarity=-0.037 Sum_probs=102.9
Q ss_pred hhhhhHHHHHHHHHHhhhhh-ccCCCCChhhhHHHHHHHHHHHcccccccccCCC------cchHHHHhHHHHHHHHhhc
Q 016621 60 TDLRNAVCIFYLVLRALDTV-EDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK------EYKVLMDQFHHVSTAFLEL 132 (386)
Q Consensus 60 ~~lR~av~alYaf~R~lD~I-~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~------~~~~l~~~~~~v~~~~~~l 132 (386)
++.-..++-+..+.-.+||. .|+.....+....++..++..+..-.-... |.+ .+.++...|..+..++...
T Consensus 173 ~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~-g~p~~~~~~~~dp~~~al~d~~~~l~~~ 251 (433)
T 3v1v_A 173 VDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAE-YTPTWQASLAADAPRRAYDSAMGYFVRA 251 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTT-THHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccC-CCCccccccCCchHHHHHHHHHHHHHhh
Confidence 45556677888888899999 787432122222344444433321000001 211 1345678888888887544
Q ss_pred C-HHHHHHHHHHHHhhhhHHHhhhh----hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-----CChhHHHHHHH
Q 016621 133 G-KGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-----LAPDSLSNSMG 202 (386)
Q Consensus 133 ~-~~~~~lI~~i~~~m~~Gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~-----~~~~~~A~~lG 202 (386)
. +...+-+.+-++++..++..-.. ..++|++||..+-..+++.....+...+......+ .....+-+..+
T Consensus 252 a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~ 331 (433)
T 3v1v_A 252 ATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAG 331 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHH
Confidence 2 22222222233334445443332 35899999999987763322222222221111111 11124566778
Q ss_pred HHHHHHHHHhchHhhhhcCCCC-Cc-cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016621 203 LFLQKTNIIRDYLEDINEIPKC-RM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (386)
Q Consensus 203 ~aLQltNIlRD~~ED~~e~~~G-R~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~ 272 (386)
...-++|=|-.+..+.+ +| .+ =...=++.++|++.++ +.+-+.+++.+....+.+...
T Consensus 332 ~i~rL~NDI~Sy~kE~~---~gg~~~N~V~~~mke~g~S~ee---------A~~~v~~~i~~~~~~F~~~~~ 391 (433)
T 3v1v_A 332 NATTIVNDLYSYTKELN---SPGRHLNLPVVIAEREQLCERD---------AYLKAVEVHNELQHSFEAAAA 391 (433)
T ss_dssp HHHHHHHHHHSHHHHTT---SSSCCCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHh---cCCCCCcHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777 53 33 2223356678887654 344455565655555554443
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=87.28 E-value=19 Score=33.70 Aligned_cols=120 Identities=12% Similarity=0.016 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhcCCCHHHHHHHHHhhhhHHHHHHHHHhcccC-CCC--CChhHHHHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TED--LAPDSLSNSMGLFLQKTNII 211 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~-~~~--~~~~~~A~~lG~aLQltNIl 211 (386)
...+++.+.+..|..|-..|+.. .++|....++=.|......+.+-..-+ .+. .....++.++|+|+|+.+=+
T Consensus 135 ~~~~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDi 210 (289)
T 2azj_A 135 DALNTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDF 210 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566667788888888763 556665555555555544444422211 111 11247899999999999988
Q ss_pred hchHh----hhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016621 212 RDYLE----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (386)
Q Consensus 212 RD~~E----D~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~ 279 (386)
-|+.- |+. .|.+-||.= +.+.|. + ..+ -..+..+..+|...+..+|.
T Consensus 211 lD~~~~~K~dl~---~gk~Tlp~l-~~~~g~--~------------~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 211 VDYKTKKVEEID---GSAKQLFKY-YREGKL--E------------EYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp HHHTTSCTTTCC---TTGGGGHHH-HTTTCH--H------------HHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcCCCChhhh---cCcccHHHH-HHcCCH--H------------HHH---HHHHHHHHHHHHHHHHhCCC
Confidence 88853 444 465777763 321111 1 111 13678888888888888876
No 41
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=85.76 E-value=27 Score=33.82 Aligned_cols=198 Identities=9% Similarity=-0.020 Sum_probs=110.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC----CCcchHHHHhHHHHHHHHhhc-CH
Q 016621 60 TDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG----TKEYKVLMDQFHHVSTAFLEL-GK 134 (386)
Q Consensus 60 ~~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G----~~~~~~l~~~~~~v~~~~~~l-~~ 134 (386)
++....++-+..+.-.+||+-|+.... .....++.+.+.+.. ..+ | .....++...|.++.+++... .+
T Consensus 103 ~erL~l~a~~~~w~f~~DD~~D~~~~g--~~~~~~~~~~~~l~~---~l~-~~~~~p~~~~p~~~al~dl~~~~~~~~~~ 176 (382)
T 3kb9_A 103 DEVLQAIADYSAWFFVWDDRHDRDIVH--GRAGAWRRLRGLLHT---ALD-SPGDHLHHEDTLVAGFADSVRRLYAFLPA 176 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH---HHH-SCGGGTTCSSHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccc--cCHHHHHHHHHHHHH---Hhc-CCCCCCCCCChHHHHHHHHHHHHHccCCH
Confidence 344446778888889999999963210 011233333333322 011 2 123457888888888887643 33
Q ss_pred HHHHHHHHHHHhhhhHHHhhhh----hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC-----CChhHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED-----LAPDSLSNSMGLF 204 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~-----~~~~~~A~~lG~a 204 (386)
....-+.+.++.+..++..... ..++|++||..+...+.|.--.+..-.++. ....+ .....+-+..+..
T Consensus 177 ~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~~i 256 (382)
T 3kb9_A 177 TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEF 256 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHH
Confidence 3333333344445556554432 358999999999887777533322222221 11111 1112356677788
Q ss_pred HHHHHHHhchHhhhhcCCCCCcc-ccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016621 205 LQKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMS 275 (386)
Q Consensus 205 LQltNIlRD~~ED~~e~~~GR~y-lP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~ 275 (386)
.-++|=|-.+....+ +|-+- .-.=.+..+|++.++ +.+.+.+++.++...+.++..-+.
T Consensus 257 ~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L~ 316 (382)
T 3kb9_A 257 AAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDAL 316 (382)
T ss_dssp HHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888887777 67531 112245667776554 556677777777776666554443
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=84.37 E-value=24 Score=34.28 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhHHHhhhhhc----CCCH-HHHHHHHHhhhhHH-HHHHHH---HhcccCCCC---CChhHHHHHHHHH
Q 016621 137 QDAIEDITKRMGAGMAKFICKE----VESI-DDYDEYCYYVAGLV-GLGLSK---LFYASGTED---LAPDSLSNSMGLF 204 (386)
Q Consensus 137 ~~lI~~i~~~m~~Gm~~dl~~~----~~t~-~dl~~Yc~~VAG~V-G~ll~~---l~~~~~~~~---~~~~~~A~~lG~a 204 (386)
.+++.+.+..|..|-..|+... -.+. ++|..=..+=.|.. ..+.+. +++....+. .....++..+|+|
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~a 249 (368)
T 2her_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEF 249 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 3455556667888988888632 2344 55544333333332 222222 232221221 1234889999999
Q ss_pred HHHHHHHhch------HhhhhcCCCCCccccH
Q 016621 205 LQKTNIIRDY------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 205 LQltNIlRD~------~ED~~e~~~GR~ylP~ 230 (386)
+|+.+=+-|+ +.|+. .|.+=||.
T Consensus 250 FQI~DD~LD~~~~GK~g~Dl~---egK~T~pv 278 (368)
T 2her_A 250 YQVHNDVSDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHHHHHHHHSCCSSSCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHhcCCCCChHh---CCcccHHH
Confidence 9999988887 48998 69998987
No 43
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=81.37 E-value=51 Score=33.73 Aligned_cols=190 Identities=10% Similarity=0.071 Sum_probs=97.6
Q ss_pred hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccc-cCCCcc--hHHHHhHHHHHHHHhhc--CH-
Q 016621 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKEY--KVLMDQFHHVSTAFLEL--GK- 134 (386)
Q Consensus 61 ~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~-~G~~~~--~~l~~~~~~v~~~~~~l--~~- 134 (386)
..|-.+.-+-++.-.+||+=|.-. . ...|+.|-+.+.. |... .+.-++ .++..++..+..++..- +.
T Consensus 286 ~~Rl~~aK~~~l~tviDD~yD~~g-t----~eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~ 358 (549)
T 1n1b_A 286 YQRKMAATIIVLATVIDDIYDVYG-T----LDELELFTDTFKR--WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEH 358 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-C----HHHHHHHHHHHHH--TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-C----HHHHHHHHHHHHh--cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777778888999998753 2 2356777777753 4321 011122 45555666666554321 00
Q ss_pred H--HHHHHHHHHHhhhhHHHhhh---h-hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCCh--------hHHHHH
Q 016621 135 G--YQDAIEDITKRMGAGMAKFI---C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAP--------DSLSNS 200 (386)
Q Consensus 135 ~--~~~lI~~i~~~m~~Gm~~dl---~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~~~~--------~~~A~~ 200 (386)
. ....+.+..+.+..++..-. . ..++|++||......+.|.--..+...++....-.... ..+...
T Consensus 359 ~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 359 GFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHH
Confidence 0 01112222233333443322 2 35899999999988777754444444444321111111 134444
Q ss_pred HHHHHHHHHHHhchHhhhhcCCCCCc--cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 201 MGLFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 201 lG~aLQltNIlRD~~ED~~e~~~GR~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
.+...-+.|=|..+..+.+ +|.+ .+. =.|.++|++.++ +..-++.++.++...+.+.
T Consensus 439 ~~~i~RL~NDi~S~~~E~~---rG~v~n~V~-cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e 497 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFELA---RGDVPKTIQ-CYMKETNASEEE---------AVEHVKFLIREAWKDMNTA 497 (549)
T ss_dssp HHHHHHHHHHHC------------CCCCHHH-HHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhc---cCCccHHHH-HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 5555555565666666655 6653 222 146677876544 5667888888888877654
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=79.73 E-value=19 Score=33.85 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 144 TKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 144 ~~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
+..|..|-..|+. ..-.|.++|..-..+=.|......+.+-.. ++.+. .....++..+|+|+|+.+=+-|+--|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4457778888885 245688888877655555555555543211 22211 12347899999999999988888766
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~~~ 280 (386)
..+ .|.-. . . | .++.+=.....+..--..+..++.+|...+..++..
T Consensus 224 ~~~--~GK~~---~------~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQ--SGKPT---N------N---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ------------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHH--HCCcc---c------h---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 542 34321 1 0 1 234444444445555566777788888777777543
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=78.79 E-value=36 Score=32.17 Aligned_cols=118 Identities=19% Similarity=0.055 Sum_probs=66.9
Q ss_pred HhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHhchHhh
Q 016621 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLED 217 (386)
Q Consensus 145 ~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~~lG~aLQltNIlRD~~ED 217 (386)
..|..|-..|+. ..-.|.++|..-..+=.|..-...+++-.. +|.+.. ....++..+|+|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467788888885 245688888876655545444444443221 122221 2237899999999999988888766
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016621 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (386)
Q Consensus 218 ~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~ 278 (386)
.++ .|. -+ .+ ..++.+=.....+..--..+..++.+|...+..++
T Consensus 239 ~~~--~GK----------~~---g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 EEE--SGK----------TT---HL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp ----------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hHH--HCc----------cc---cc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 542 232 11 11 33444444444555556677777888887777643
No 46
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=68.06 E-value=59 Score=31.39 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHhhhhHHHhhhhh-----cCCCHHHHHHH-HHhhhhHHHHHHHH---HhcccC-CC-C-CChhHHHHHHHHHHH
Q 016621 139 AIEDITKRMGAGMAKFICK-----EVESIDDYDEY-CYYVAGLVGLGLSK---LFYASG-TE-D-LAPDSLSNSMGLFLQ 206 (386)
Q Consensus 139 lI~~i~~~m~~Gm~~dl~~-----~~~t~~dl~~Y-c~~VAG~VG~ll~~---l~~~~~-~~-~-~~~~~~A~~lG~aLQ 206 (386)
++.+.+..|..|-..|+.. .-.|.+++..- -+-+|+......+. +++..+ .+ . .....++..+|+|+|
T Consensus 172 ~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2q58_A 172 IYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 3344445666787778741 13355665443 34455553333332 222111 11 1 223478999999999
Q ss_pred HHHHHhch------HhhhhcCCCCCccccH
Q 016621 207 KTNIIRDY------LEDINEIPKCRMFWPR 230 (386)
Q Consensus 207 ltNIlRD~------~ED~~e~~~GR~ylP~ 230 (386)
+.+=+-|+ +.|+. .|.+=||.
T Consensus 252 I~DDiLD~~~gK~~g~Dl~---egK~T~p~ 278 (368)
T 2q58_A 252 VHNDVSDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHHHHHHSCCCSSCTTT---SCCCCHHH
T ss_pred HHHHHhhcccCCCCCchHh---cCCcHHHH
Confidence 99988884 58999 69999996
No 47
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=67.69 E-value=79 Score=29.39 Aligned_cols=202 Identities=8% Similarity=-0.146 Sum_probs=114.5
Q ss_pred HHHHhcCh---hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCC--CcchHHHHhHHHHHH
Q 016621 53 LVIQQLGT---DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT--KEYKVLMDQFHHVST 127 (386)
Q Consensus 53 ~a~~~Lp~---~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~--~~~~~l~~~~~~v~~ 127 (386)
+++.+.|. +....++-+..+.-.+||+-|.... .....++.+.+.+.. |. . |. +...++...+..+..
T Consensus 53 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~---~~~ee~~~~~~~l~~--~~-~-~~~p~~~~~~~~~l~d~~~ 125 (337)
T 1ps1_A 53 LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRG---ENPEDTKQLTDQVAA--AL-D-GPLPDTAPPIAHGFADIWR 125 (337)
T ss_dssp HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGG---GCHHHHHHHHHHHHG--GG-T-SCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCC---CCHHHHHHHHHHHHH--Hc-C-CCCCCCCChHHHHHHHHHH
Confidence 33444443 3333677788889999999987521 112345666666654 22 2 32 123567777878777
Q ss_pred HHhhcC-HHHHHHHHHHHHhhhhHHHhhhh----hcCC-CHHHHHHHHHhhhhHHHHHHHHHhccc-CCCC-----CChh
Q 016621 128 AFLELG-KGYQDAIEDITKRMGAGMAKFIC----KEVE-SIDDYDEYCYYVAGLVGLGLSKLFYAS-GTED-----LAPD 195 (386)
Q Consensus 128 ~~~~l~-~~~~~lI~~i~~~m~~Gm~~dl~----~~~~-t~~dl~~Yc~~VAG~VG~ll~~l~~~~-~~~~-----~~~~ 195 (386)
++.... +.....+.+.+..+..++..-.. ..++ |++||..+...+.|.--.+.+-.++.. ...+ +...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~ 205 (337)
T 1ps1_A 126 RTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMS 205 (337)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHH
Confidence 765432 33333333444445555544332 3578 999998888777765443333333321 1111 1112
Q ss_pred HHHHHHHHHHHHHHHHhchHhhhhcCCCCCcc-ccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016621 196 SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKY 273 (386)
Q Consensus 196 ~~A~~lG~aLQltNIlRD~~ED~~e~~~GR~y-lP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~y 273 (386)
.+-+..+...-++|=|-.+..+.. +|-+- .-.=.+.++|++.++ +.+.+.+++..+...+.....-
T Consensus 206 ~l~~~~~~i~rL~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~~ 272 (337)
T 1ps1_A 206 AMLQIAVDVNLLLNDIASLEKEEA---RGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLESC 272 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888888888887 67631 122256677776543 5666777777777766665543
No 48
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=67.59 E-value=73 Score=28.98 Aligned_cols=195 Identities=13% Similarity=0.010 Sum_probs=104.5
Q ss_pred HHHHhcCh---hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC-CCcchHHHHhHHHHHHH
Q 016621 53 LVIQQLGT---DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG-TKEYKVLMDQFHHVSTA 128 (386)
Q Consensus 53 ~a~~~Lp~---~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G-~~~~~~l~~~~~~v~~~ 128 (386)
++..+.|. +....++-+..+.-.+||+-|+.+ .++ ++.+.+.+.. |.-... .+...++...+..+..+
T Consensus 49 ~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~--~~e----~~~~~~~~~~--~~~~~~lp~~~~~~~~~l~d~~~~ 120 (300)
T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMS--FAD----GEAYNNRLIP--ISRGDVLPDRTKPEEFILYDLWES 120 (300)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSC--HHH----HHHHHHHHHH--HHHTSSCCCTTCHHHHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCC--HHH----HHHHHHHHHH--HccCCCCCCCccHHHHHHHHHHHH
Confidence 33344453 333467788899999999999854 221 2223333321 110001 11234666667777666
Q ss_pred HhhcCHHH-HHHHHHHHHhhhhHHHh--hhh-hcCCCHHHHHHHHHhhhhHHHHHHHHHhccc-CCCC---CChhHHHHH
Q 016621 129 FLELGKGY-QDAIEDITKRMGAGMAK--FIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYAS-GTED---LAPDSLSNS 200 (386)
Q Consensus 129 ~~~l~~~~-~~lI~~i~~~m~~Gm~~--dl~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~-~~~~---~~~~~~A~~ 200 (386)
+....+.+ +++++.++ .++.. ... ..++|++||..+-..+.|.--.+.+-.++.. .... .....+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~----~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~ 196 (300)
T 1di1_A 121 MRAHDAELANEVLEPTF----VFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEAN 196 (300)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHH
T ss_pred HHhhChHHHHHHHHHHH----HHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 54322222 23333333 34421 111 3589999999988887774333333333321 1111 011356667
Q ss_pred HHHHHHHHHHHhchHhhhhcCCCCC----------ccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 201 MGLFLQKTNIIRDYLEDINEIPKCR----------MFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 201 lG~aLQltNIlRD~~ED~~e~~~GR----------~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
.+...-++|=|-.+....+ +|- ..+ .=.+.++|++.++ +.+.+.+++..+...+...
T Consensus 197 ~~~~~~l~NDl~S~~kE~~---~g~~~h~~~~~~~n~V-~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~ 263 (300)
T 1di1_A 197 CAKQLSVVNDIYSYDKEEE---ASRTGHKEGAFLCSAV-KVLAEESKLGIPA---------TKRVLWSMTREWETVHDEI 263 (300)
T ss_dssp HHHHHHHHHHHHHTTTTCC---C----------CCCHH-HHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHH---hhccccccccccchhH-HHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 7777778887777777766 555 122 2256677776543 5667778888877766665
Q ss_pred HH
Q 016621 271 LK 272 (386)
Q Consensus 271 ~~ 272 (386)
.+
T Consensus 264 ~~ 265 (300)
T 1di1_A 264 VA 265 (300)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 49
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=65.88 E-value=1e+02 Score=29.96 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHhch----------HhhhhcCCCCCccccHH
Q 016621 195 DSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (386)
Q Consensus 195 ~~~A~~lG~aLQltNIlRD~----------~ED~~e~~~GR~ylP~e 231 (386)
..++..+|+|+|+.+=+-|+ +.|+. .|.+=||.=
T Consensus 272 ~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~p~i 315 (395)
T 3mav_A 272 EDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLI 315 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------CCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---cCCchHHHH
Confidence 37889999999999888886 46888 688888873
No 50
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=61.42 E-value=1e+02 Score=28.58 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=62.8
Q ss_pred HHHHHHHHH-----HhhhhHHHhhhhhc-----CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHH
Q 016621 136 YQDAIEDIT-----KRMGAGMAKFICKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSM 201 (386)
Q Consensus 136 ~~~lI~~i~-----~~m~~Gm~~dl~~~-----~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~l 201 (386)
..+++..+. ..|..|-..|+... -.|.++|..-+.+=.|......+.+-.. +|.+. .....++..+
T Consensus 146 ~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~l 225 (293)
T 2j1p_A 146 VVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCI 225 (293)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344454443 35778888888532 2355566555444444444444443321 22211 1223788999
Q ss_pred HHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016621 202 GLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (386)
Q Consensus 202 G~aLQltNIlRD~~ED~~e~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a~~yl~~l~ 278 (386)
|+|+|+.+=+-|+-.|. ..-+|. ++ .+..-...+..+..+|...+..++
T Consensus 226 G~aFQI~DDiLD~~~~~------K~T~p~-l~---------------------gle~a~~~a~~~~~~A~~~L~~l~ 274 (293)
T 2j1p_A 226 GLLFQVVDDILDVTKSS------KLTYPK-LM---------------------GLEKSREFAEKLNTEARDQLLGFD 274 (293)
T ss_dssp HHHHHHHHHHHHHHC--------CCCHHH-HH---------------------HHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHccCCc------cccHHH-HH---------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998777775443 234443 11 223344556667777777777775
No 51
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=56.26 E-value=37 Score=31.43 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=44.2
Q ss_pred HHHHHHHH-----HhhhhHHHhhhhh--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHH
Q 016621 137 QDAIEDIT-----KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 205 (386)
Q Consensus 137 ~~lI~~i~-----~~m~~Gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~aL 205 (386)
.+++..+. ..|..|...|+.. ...|.++|..-+.+=.|....+.+.+-.. +|... .....++..+|+|+
T Consensus 136 ~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aF 215 (274)
T 3kra_B 136 LRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLR 215 (274)
T ss_dssp HHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555 3467788888852 26788888765555555555555544321 22211 12347899999999
Q ss_pred HHHH
Q 016621 206 QKTN 209 (386)
Q Consensus 206 QltN 209 (386)
|+.+
T Consensus 216 QI~D 219 (274)
T 3kra_B 216 GMME 219 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9954
No 52
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=54.87 E-value=1.3e+02 Score=27.63 Aligned_cols=193 Identities=12% Similarity=0.007 Sum_probs=98.9
Q ss_pred HHHHhcCh---hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC-CCcchHHHHhHHHHHHH
Q 016621 53 LVIQQLGT---DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG-TKEYKVLMDQFHHVSTA 128 (386)
Q Consensus 53 ~a~~~Lp~---~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G-~~~~~~l~~~~~~v~~~ 128 (386)
++..+.|. +....++-+..+.-.+||+-|..+. + .++.+.+.+.. |.-... .+...++...+..+..+
T Consensus 63 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~--~----e~~~~~~~l~~--~~~~~~~p~~~~~~~~al~d~~~e 134 (320)
T 3bny_A 63 VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSF--E----EGSAYNEKLIP--ISRGDVLPDRSIPVEYIIYDLWES 134 (320)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCH--H----HHHHHHHHHHH--HHHTSSCCCTTSHHHHHHHHHHHH
T ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCCh--h----hHHHHHHHHHH--HhcCCCCCCCcCHHHHHHHHHHHH
Confidence 33444453 3334678899999999999998542 2 12223333321 110001 11235666677777666
Q ss_pred HhhcCHHHHHHHHHHHHhhhhHHHh--hh-hhcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-C----hhHHHHH
Q 016621 129 FLELGKGYQDAIEDITKRMGAGMAK--FI-CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-A----PDSLSNS 200 (386)
Q Consensus 129 ~~~l~~~~~~lI~~i~~~m~~Gm~~--dl-~~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~~-~----~~~~A~~ 200 (386)
+....+.+ ...+.+.+...+.. .. ...++|++||..+-..+.|.--.+.+-.++. |..-. . ...+-+.
T Consensus 135 ~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~ 210 (320)
T 3bny_A 135 MRAHDREM---ADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDAN 210 (320)
T ss_dssp HHHHHHHH---HHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHH
T ss_pred HHhhCHHH---HHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 54322222 22222222222211 11 1358899999999888777433333333332 21110 0 1245666
Q ss_pred HHHHHHHHHHHhchHhhhhcCCCCC--------c--cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 201 MGLFLQKTNIIRDYLEDINEIPKCR--------M--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 201 lG~aLQltNIlRD~~ED~~e~~~GR--------~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
.+...-++|=|-.+..... +|- + .+. =.+..+|++.++ +.+.+.+++......+.+.
T Consensus 211 ~~~~~~L~NDl~S~~kE~~---~g~~~~~~~~~~~N~V~-~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~l 277 (320)
T 3bny_A 211 CSKHLSVVNDIYSYEKELY---TSKTAHSEGGILCTSVQ-ILAQEADVTAEA---------AKRVLFVMCREWELRHQLL 277 (320)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------------CCSHHH-HHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHH---hhcccccccccccchHH-HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 7777778887777777766 554 1 222 256677776553 4555666666655544433
No 53
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=46.40 E-value=79 Score=29.49 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhcCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC--CChhHHHHHHHHHHHHHHHH
Q 016621 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQKTNII 211 (386)
Q Consensus 135 ~~~~lI~~i~~~m~~Gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~-~~~~~--~~~~~~A~~lG~aLQltNIl 211 (386)
...+++.+.+..|..|-..|+...... -.-+.+|+. ..+.+++-.. +|.+. .....++..+|+|+|+.+=+
T Consensus 133 ~~~~~ls~~~~~~~~GQ~lDl~~~~~~-----~i~~KTg~L-f~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDi 206 (285)
T 4fp4_A 133 DVVTYLADVAQRLSVGQALDLEGERDK-----AAEFKTAPL-IEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDY 206 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHTHHH-HHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccc-----hhhcCcHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677888988887522111 333334433 3333332211 12111 12247899999999987755
Q ss_pred hchH
Q 016621 212 RDYL 215 (386)
Q Consensus 212 RD~~ 215 (386)
-|+.
T Consensus 207 LD~~ 210 (285)
T 4fp4_A 207 SDEN 210 (285)
T ss_dssp ----
T ss_pred hccC
Confidence 5553
No 54
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=46.38 E-value=2.1e+02 Score=27.58 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=67.4
Q ss_pred hcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCCCcchHHHHhHHHHHHHHhhcCHHH
Q 016621 57 QLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGY 136 (386)
Q Consensus 57 ~Lp~~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~~~~~l~~~~~~v~~~~~~l~~~~ 136 (386)
..+.+....++.+..++=.+||+.|+.. ..+..|.+.+.. |.+..+|++.+|.++..+....-.++
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~-------~~l~~~~~~ll~-------G~~~~~Pl~~al~dl~~rl~~~~~p~ 145 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY-------PTMVNYFDDLQA-------GREQAHPWWALVNEHFPNVLRHFGPF 145 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH-------HHHTTHHHHHHH-------TCCCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH-------HHHHHHHHHHhc-------CCCCCChHHHHHHHHHHHHHHhcCHH
Confidence 3467888899999999999999998642 346666666643 44556789999999988766543332
Q ss_pred --HHHHHHHHHhhhhHHHhhhh--hcCCCHHHHHHHHHhhhhHHHHHHHH
Q 016621 137 --QDAIEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSK 182 (386)
Q Consensus 137 --~~lI~~i~~~m~~Gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~ll~~ 182 (386)
..++..+.+ -.+|...... ..+.+.+++-.|-+...|. ++....
T Consensus 146 ~~~rf~~s~~~-~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~ 193 (374)
T 1yyq_A 146 CSLNLIRSTLD-FFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGA 193 (374)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHH
Confidence 233332221 1122221111 2355777777777777775 444443
No 55
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=46.12 E-value=2.6e+02 Score=28.57 Aligned_cols=189 Identities=8% Similarity=0.067 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccc-cCCCc--chHHHHhHHHHHHHHhhcC--H-H
Q 016621 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKE--YKVLMDQFHHVSTAFLELG--K-G 135 (386)
Q Consensus 62 lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~-~G~~~--~~~l~~~~~~v~~~~~~l~--~-~ 135 (386)
.|-.+.-+-++.-.+||+=|.-. .. ..|+.|-+.+.. |... .+.-+ ..++..++..+..++..-. . .
T Consensus 308 ~Rl~~aK~~~litviDD~fD~yg-T~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~ 380 (569)
T 2j5c_A 308 ERIMLTKINALVTTIDDVFDIYG-TL----EELQLFTTAIQR--WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKG 380 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-CH----HHHHHHHHHHHH--TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-CH----HHHHHHHHHHHH--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35555667777888999998753 22 346677777763 4321 01112 3455566666665543211 0 0
Q ss_pred --HHHHHHHHHHhhhhHHHhhh---h-hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCC-------hhHHHHHHH
Q 016621 136 --YQDAIEDITKRMGAGMAKFI---C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLA-------PDSLSNSMG 202 (386)
Q Consensus 136 --~~~lI~~i~~~m~~Gm~~dl---~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~~~-------~~~~A~~lG 202 (386)
....+.+..+.+..++..-. . ..++|++|+......+.|.--..+...++....-... ...+....+
T Consensus 381 ~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~ 460 (569)
T 2j5c_A 381 FDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASC 460 (569)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHH
Confidence 01112222233333443332 2 3589999999988877775444444444432111100 012333344
Q ss_pred HHHHHHHHHhchHhhhhcCCCCCc--cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 203 LFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 203 ~aLQltNIlRD~~ED~~e~~~GR~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
...=+.|=|..+..+.+ +|-+ .+.- .|.++|++. +.+..-++.++..+...+.+.
T Consensus 461 ~i~RL~NDI~S~~~E~~---rG~v~s~V~c-yMke~g~s~---------eeA~~~i~~~ie~~wk~ln~e 517 (569)
T 2j5c_A 461 TILRLADDMGTSLDEVE---RGDVPKSVQC-YMNEKNASE---------EEAREHVRSLIDQTWKMMNKE 517 (569)
T ss_dssp HHHHHHHHHHC-------------CCHHHH-C------CC---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhcc---cCCccHHHHH-HHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555554444 4543 2211 345566654 346667888888888876653
No 56
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=38.78 E-value=3.2e+02 Score=27.60 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=105.4
Q ss_pred hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccc-cCC-Cc-chHHHHhHHHHHHHHhhcC--H-
Q 016621 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGT-KE-YKVLMDQFHHVSTAFLELG--K- 134 (386)
Q Consensus 61 ~lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~-~G~-~~-~~~l~~~~~~v~~~~~~l~--~- 134 (386)
..|-.+.-+-++.-.+||+=|.-. .. ..|+.|-+.+.. |... .+. |. ..++..++..+..++..-. .
T Consensus 280 ~~Rl~~aK~~~litviDD~fD~~g-t~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~ 352 (543)
T 2ong_A 280 SARIMMGKVNALITVIDDIYDVYG-TL----EELEQFTDLIRR--WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEK 352 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS-CH----HHHHHHHHHHHT--TCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CH----HHHHHHHHHHHh--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667778888999998753 22 347778887764 4322 011 21 3456666666665554211 0
Q ss_pred H--HHHHHHHHHHhhhhHHHhhh---h-hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCC-------hhHHHHHH
Q 016621 135 G--YQDAIEDITKRMGAGMAKFI---C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLA-------PDSLSNSM 201 (386)
Q Consensus 135 ~--~~~lI~~i~~~m~~Gm~~dl---~-~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~~~~~~-------~~~~A~~l 201 (386)
. ....+.+..+.+..++..-. . ..++|++|+......+.|.--.++...++....-... ...+....
T Consensus 353 ~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~ 432 (543)
T 2ong_A 353 GVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWS 432 (543)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHH
Confidence 0 01112222233333544332 2 3588999999988887775555555555432111100 11344455
Q ss_pred HHHHHHHHHHhchHhhhhcCCCCCc--cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016621 202 GLFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (386)
Q Consensus 202 G~aLQltNIlRD~~ED~~e~~~GR~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~a 270 (386)
+...-+.|=|..+..+.+ +|-+ .+.- .|.++|++.++ +..-++.++..+...+.+.
T Consensus 433 ~~i~RL~NDi~S~~~E~~---rG~~~n~V~c-yMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e 490 (543)
T 2ong_A 433 SFVLRLADDLGTSVEEVS---RGDVPKSLQC-YMSDYNASEAE---------ARKHVKWLIAEVWKKMNAE 490 (543)
T ss_dssp HHHHHHHHHHHSSHHHHH---TSCCCCHHHH-HHHHTCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhccc---cCCccHHHHH-HHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 555556676777776666 6764 2322 46677876543 5566788888888876653
No 57
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=32.96 E-value=94 Score=28.60 Aligned_cols=73 Identities=10% Similarity=-0.028 Sum_probs=38.7
Q ss_pred HHHHHHHHH-----HhhhhHHHhhhhh-cCCCHHHHHHH-HHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHH
Q 016621 136 YQDAIEDIT-----KRMGAGMAKFICK-EVESIDDYDEY-CYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLF 204 (386)
Q Consensus 136 ~~~lI~~i~-----~~m~~Gm~~dl~~-~~~t~~dl~~Y-c~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~lG~a 204 (386)
..+++.++. ..|..|...|+.. .-.+.+.++.- -+.+|++ ....+.+-.. +|.+. .....++..+|+|
T Consensus 137 ~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lGla 215 (273)
T 3qkc_B 137 ILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTL-HACGAACGAILGGCDEDKIEKLRRFGLYVGTV 215 (273)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345555555 3457788888853 22345444433 3444444 4444443211 22111 1234788899999
Q ss_pred HHHHH
Q 016621 205 LQKTN 209 (386)
Q Consensus 205 LQltN 209 (386)
+|+.+
T Consensus 216 FQI~D 220 (273)
T 3qkc_B 216 QGLLG 220 (273)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99854
No 58
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=31.77 E-value=4.3e+02 Score=26.91 Aligned_cols=187 Identities=10% Similarity=0.062 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHccccccccc--CCCc-chHHHHhHHHHHHHHhhc--CHH-
Q 016621 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC--GTKE-YKVLMDQFHHVSTAFLEL--GKG- 135 (386)
Q Consensus 62 lR~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--G~~~-~~~l~~~~~~v~~~~~~l--~~~- 135 (386)
.|..+.-.-++.-.+||+=|.-. . ...|+.|-+.+.. |.... .-|. -..+..++..+..++..- +..
T Consensus 290 ~R~~~aK~~~l~tviDD~yD~yg-t----~eEl~~ft~ai~R--WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g 362 (555)
T 3n0f_A 290 CRNSVAKMFSFVTIIDDIYDVYG-T----LDELELFTDAVER--WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKG 362 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-C----HHHHHHHHHHHHH--TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccccC-C----HHHHHHHHHHHHh--cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777778888888999998643 2 3467777777764 54320 1111 134455565655554321 110
Q ss_pred --HHHHHHHHHHhhhhHHHhhhh----hcCCCHHHHHHHHHhhhhHHHHHHHHHhcccC-CCCC------ChhHHHHHHH
Q 016621 136 --YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TEDL------APDSLSNSMG 202 (386)
Q Consensus 136 --~~~lI~~i~~~m~~Gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~ll~~l~~~~~-~~~~------~~~~~A~~lG 202 (386)
....+.+..+.+..|+..-.. ..++|++||.....-+.|.--..++..++... .... ....+.+..+
T Consensus 363 ~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 363 ENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHH
Confidence 001122222333345544332 35899999999988877754333333443211 1110 0013444555
Q ss_pred HHHHHHHHHhchHhhhhcCCCCCccccHH---HHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016621 203 LFLQKTNIIRDYLEDINEIPKCRMFWPRE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (386)
Q Consensus 203 ~aLQltNIlRD~~ED~~e~~~GR~ylP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~l~~ 269 (386)
...-+.|=|..+....+ +|-+ +.- .|.++|++.++ +..-++.++.++...+.+
T Consensus 443 ~i~RL~NDi~S~~~E~~---rG~v--as~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 443 HIFRLCNDLASASAEIA---RGET--ANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHHHHHHHHHHHHT---TTCC--CSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhhh---cCCc--chHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 55556666666666565 6653 222 45567876654 566678888888775543
No 59
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=27.30 E-value=26 Score=24.81 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.7
Q ss_pred CCCccccHHHHHhccCChhhh
Q 016621 223 KCRMFWPREIWSKYVNKLEDL 243 (386)
Q Consensus 223 ~GR~ylP~e~l~~~g~~~~dl 243 (386)
.||+.+|+++..+.|+.+.|-
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCE
T ss_pred CCEEEeCHHHHHHcCCCCCCE
Confidence 699999999999999987764
No 60
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.45 E-value=40 Score=22.91 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCccccHHHHHhccCChhhh
Q 016621 223 KCRMFWPREIWSKYVNKLEDL 243 (386)
Q Consensus 223 ~GR~ylP~e~l~~~g~~~~dl 243 (386)
.|++-+|+++..+.|+.+.|-
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCE
T ss_pred CCEEEeCHHHHHHcCcCCCCE
Confidence 699999999999999987764
Done!