Query 016622
Match_columns 386
No_of_seqs 437 out of 2597
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 1.5E-46 3.3E-51 365.1 33.3 308 74-385 11-322 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 4.3E-40 9.2E-45 295.5 21.4 255 125-385 2-264 (300)
3 COG0489 Mrp ATPases involved i 100.0 2.2E-31 4.8E-36 247.9 20.5 205 171-385 55-264 (265)
4 cd02037 MRP-like MRP (Multiple 100.0 4.5E-29 9.7E-34 218.2 19.5 167 175-380 1-169 (169)
5 CHL00175 minD septum-site dete 100.0 3.2E-28 7E-33 230.0 20.4 207 168-385 10-225 (281)
6 TIGR01969 minD_arch cell divis 100.0 3.4E-28 7.5E-33 225.7 18.9 196 174-385 1-203 (251)
7 COG2894 MinD Septum formation 100.0 1.3E-28 2.8E-33 214.2 12.2 203 172-385 1-219 (272)
8 COG0455 flhG Antiactivator of 99.9 4.5E-27 9.8E-32 217.3 16.9 201 172-385 1-211 (262)
9 TIGR01968 minD_bact septum sit 99.9 7.7E-27 1.7E-31 217.8 18.6 201 173-385 1-210 (261)
10 PRK13232 nifH nitrogenase redu 99.9 5.8E-27 1.3E-31 220.5 17.9 202 173-385 1-217 (273)
11 cd02117 NifH_like This family 99.9 2E-26 4.3E-31 208.9 18.6 193 174-379 1-212 (212)
12 PRK10818 cell division inhibit 99.9 1.8E-26 4E-31 216.8 18.7 203 172-385 1-220 (270)
13 PRK13236 nitrogenase reductase 99.9 6.6E-26 1.4E-30 215.3 18.7 202 173-385 6-223 (296)
14 TIGR03371 cellulose_yhjQ cellu 99.9 3.4E-26 7.3E-31 211.9 14.7 203 173-385 1-214 (246)
15 PRK13233 nifH nitrogenase redu 99.9 7.8E-26 1.7E-30 213.1 16.8 203 172-385 1-220 (275)
16 PRK13235 nifH nitrogenase redu 99.9 1.6E-25 3.6E-30 210.8 18.3 204 173-385 1-219 (274)
17 PRK13185 chlL protochlorophyll 99.9 2.6E-25 5.7E-30 208.9 19.6 196 172-385 1-214 (270)
18 TIGR01007 eps_fam capsular exo 99.9 3E-25 6.4E-30 200.0 16.6 172 173-350 17-196 (204)
19 CHL00072 chlL photochlorophyll 99.9 9.3E-25 2E-29 206.6 20.2 193 176-385 3-212 (290)
20 cd02040 NifH NifH gene encodes 99.9 3.6E-25 7.7E-30 207.9 17.1 201 173-385 1-218 (270)
21 PRK13869 plasmid-partitioning 99.9 1.3E-25 2.9E-30 221.4 14.4 204 172-385 120-360 (405)
22 TIGR03815 CpaE_hom_Actino heli 99.9 1.3E-24 2.9E-29 209.2 20.0 194 171-385 91-296 (322)
23 cd02032 Bchl_like This family 99.9 1.9E-24 4.1E-29 202.8 19.6 193 175-385 2-212 (267)
24 cd03110 Fer4_NifH_child This p 99.9 9.4E-25 2E-29 192.6 16.5 178 175-377 1-179 (179)
25 TIGR01281 DPOR_bchL light-inde 99.9 1.3E-24 2.9E-29 203.9 17.9 193 175-385 2-212 (268)
26 PRK13234 nifH nitrogenase redu 99.9 7.7E-25 1.7E-29 207.9 15.7 200 173-385 4-221 (295)
27 PRK13230 nitrogenase reductase 99.9 2.4E-24 5.1E-29 203.4 18.0 202 173-385 1-218 (279)
28 TIGR03018 pepcterm_TyrKin exop 99.9 2E-24 4.4E-29 194.9 16.6 163 171-342 33-207 (207)
29 TIGR03029 EpsG chain length de 99.9 1.8E-24 3.9E-29 203.7 16.8 165 172-343 102-274 (274)
30 cd02033 BchX Chlorophyllide re 99.9 7.2E-24 1.6E-28 202.0 20.0 196 171-385 29-247 (329)
31 cd02036 MinD Bacterial cell di 99.9 5.4E-24 1.2E-28 187.2 17.1 159 175-385 1-159 (179)
32 TIGR01287 nifH nitrogenase iro 99.9 6.4E-24 1.4E-28 200.1 17.4 200 174-385 1-217 (275)
33 TIGR03453 partition_RepA plasm 99.9 2.3E-24 4.9E-29 212.4 14.9 205 171-385 102-343 (387)
34 PRK13231 nitrogenase reductase 99.9 4.7E-24 1E-28 199.8 15.6 202 173-385 2-211 (264)
35 PHA02519 plasmid partition pro 99.9 4.5E-24 9.7E-29 208.9 14.8 205 172-385 105-341 (387)
36 PRK13705 plasmid-partitioning 99.9 3.6E-24 7.7E-29 210.0 13.2 206 171-385 104-341 (388)
37 TIGR02016 BchX chlorophyllide 99.9 2.6E-23 5.7E-28 197.1 18.0 196 174-384 1-221 (296)
38 PRK10037 cell division protein 99.9 9E-24 2E-28 196.3 14.5 193 173-385 1-208 (250)
39 COG1149 MinD superfamily P-loo 99.9 4.9E-23 1.1E-27 185.8 18.6 198 173-385 1-255 (284)
40 COG3640 CooC CO dehydrogenase 99.9 3.5E-23 7.6E-28 183.0 17.0 193 175-385 2-226 (255)
41 COG1192 Soj ATPases involved i 99.9 2E-23 4.2E-28 195.0 12.7 203 172-385 1-223 (259)
42 TIGR01005 eps_transp_fam exopo 99.9 5.1E-23 1.1E-27 219.3 15.4 175 171-351 544-725 (754)
43 PF06564 YhjQ: YhjQ protein; 99.9 1.3E-22 2.8E-27 184.3 13.2 195 173-385 1-208 (243)
44 PHA02518 ParA-like protein; Pr 99.9 2E-22 4.4E-27 182.1 14.2 171 174-384 1-177 (211)
45 PRK09841 cryptic autophosphory 99.9 4.8E-22 1E-26 210.0 18.0 170 172-348 530-707 (726)
46 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 3E-23 6.5E-28 184.9 7.0 190 176-384 1-195 (195)
47 PRK11519 tyrosine kinase; Prov 99.9 6.4E-22 1.4E-26 208.9 17.8 169 172-348 525-702 (719)
48 PRK13849 putative crown gall t 99.9 2.8E-21 6.1E-26 176.8 14.2 178 173-385 1-185 (231)
49 cd02038 FleN-like FleN is a me 99.9 9.8E-21 2.1E-25 160.1 13.2 135 175-377 1-139 (139)
50 cd00550 ArsA_ATPase Oxyanion-t 99.8 3.6E-21 7.9E-26 178.9 8.7 204 176-380 2-240 (254)
51 cd03111 CpaE_like This protein 99.8 1.8E-19 3.9E-24 145.0 13.3 102 175-343 1-106 (106)
52 cd02035 ArsA ArsA ATPase funct 99.8 6.4E-20 1.4E-24 166.8 9.0 167 176-348 1-184 (217)
53 COG0541 Ffh Signal recognition 99.8 6.3E-20 1.4E-24 175.8 9.0 243 72-373 19-270 (451)
54 COG2151 PaaD Predicted metal-s 99.8 8.8E-19 1.9E-23 139.1 9.6 90 71-160 8-97 (111)
55 PF00142 Fer4_NifH: 4Fe-4S iro 99.8 4.4E-18 9.5E-23 154.4 14.1 201 174-385 1-218 (273)
56 PF07015 VirC1: VirC1 protein; 99.8 6.4E-18 1.4E-22 151.4 14.2 146 173-347 1-153 (231)
57 cd02042 ParA ParA and ParB of 99.8 8.3E-18 1.8E-22 134.8 13.0 99 175-342 1-104 (104)
58 COG1348 NifH Nitrogenase subun 99.8 3.3E-17 7.2E-22 144.3 16.5 202 173-385 1-219 (278)
59 PRK10867 signal recognition pa 99.7 6.5E-18 1.4E-22 166.6 12.1 243 73-374 20-272 (433)
60 PF09140 MipZ: ATPase MipZ; I 99.7 6.9E-19 1.5E-23 158.1 1.7 131 174-316 1-132 (261)
61 PF13614 AAA_31: AAA domain; P 99.7 9.3E-18 2E-22 144.5 8.0 141 174-320 1-156 (157)
62 COG4963 CpaE Flp pilus assembl 99.7 2.4E-16 5.2E-21 149.5 16.7 198 170-383 101-311 (366)
63 TIGR00959 ffh signal recogniti 99.7 4.5E-17 9.7E-22 160.6 11.2 243 73-374 19-271 (428)
64 PF02374 ArsA_ATPase: Anion-tr 99.7 3.3E-17 7.2E-22 155.8 9.4 196 174-379 2-286 (305)
65 TIGR01425 SRP54_euk signal rec 99.7 5.9E-17 1.3E-21 158.9 11.1 243 73-374 20-271 (429)
66 PRK00771 signal recognition pa 99.7 5.1E-16 1.1E-20 153.6 11.4 240 73-374 16-264 (437)
67 COG0003 ArsA Predicted ATPase 99.6 4.7E-15 1E-19 140.8 14.8 194 174-380 3-286 (322)
68 TIGR00064 ftsY signal recognit 99.6 1.9E-14 4.1E-19 134.8 15.9 167 172-374 71-249 (272)
69 TIGR03406 FeS_long_SufT probab 99.5 6.5E-14 1.4E-18 121.2 11.3 89 72-160 70-161 (174)
70 cd03115 SRP The signal recogni 99.5 3.6E-13 7.8E-18 118.0 16.0 164 175-374 2-171 (173)
71 cd03114 ArgK-like The function 99.5 4.3E-13 9.4E-18 114.4 15.1 146 176-345 2-148 (148)
72 PF01883 DUF59: Domain of unkn 99.5 9.4E-14 2E-18 103.5 8.3 72 77-150 1-72 (72)
73 PRK10416 signal recognition pa 99.5 1.3E-12 2.9E-17 124.8 17.8 166 173-374 114-291 (318)
74 PF10609 ParA: ParA/MinD ATPas 99.5 1.2E-13 2.6E-18 103.4 8.0 77 282-358 2-80 (81)
75 PRK00090 bioD dithiobiotin syn 99.5 4.4E-13 9.4E-18 122.3 11.8 193 176-379 2-202 (222)
76 PRK11889 flhF flagellar biosyn 99.4 1.1E-11 2.5E-16 119.4 16.0 169 173-381 241-421 (436)
77 TIGR00347 bioD dethiobiotin sy 99.4 3.2E-12 7E-17 111.1 11.3 155 178-342 2-166 (166)
78 cd02034 CooC The accessory pro 99.3 5.4E-12 1.2E-16 102.9 9.2 111 176-311 2-115 (116)
79 KOG0780 Signal recognition par 99.3 2.7E-12 5.9E-17 121.1 7.8 246 73-374 21-272 (483)
80 PF13500 AAA_26: AAA domain; P 99.3 9.8E-12 2.1E-16 111.4 11.0 189 174-384 1-197 (199)
81 cd01983 Fer4_NifH The Fer4_Nif 99.3 2.3E-11 5E-16 95.1 11.8 94 176-342 2-99 (99)
82 PRK13886 conjugal transfer pro 99.3 4.1E-11 9E-16 109.2 14.5 48 172-219 1-48 (241)
83 PRK12726 flagellar biosynthesi 99.3 7.1E-11 1.5E-15 113.6 16.4 168 173-379 206-384 (407)
84 PRK12374 putative dithiobiotin 99.3 9.2E-11 2E-15 107.7 16.1 194 172-381 1-205 (231)
85 PRK01077 cobyrinic acid a,c-di 99.3 5.5E-11 1.2E-15 119.5 15.2 172 173-383 3-185 (451)
86 TIGR02945 SUF_assoc FeS assemb 99.3 2.9E-11 6.4E-16 95.9 10.6 83 77-160 3-85 (99)
87 PRK14974 cell division protein 99.3 6.1E-11 1.3E-15 113.9 14.8 245 75-374 58-311 (336)
88 cd03109 DTBS Dethiobiotin synt 99.3 1.7E-10 3.7E-15 96.7 15.5 122 181-377 7-134 (134)
89 KOG2825 Putative arsenite-tran 99.3 1.3E-11 2.8E-16 110.4 8.7 174 172-348 17-267 (323)
90 COG0132 BioD Dethiobiotin synt 99.3 1.9E-10 4.1E-15 103.5 15.7 201 172-382 1-207 (223)
91 PF00448 SRP54: SRP54-type pro 99.2 1.4E-10 3.1E-15 103.4 13.7 166 173-374 1-172 (196)
92 PRK13768 GTPase; Provisional 99.2 4.1E-11 8.9E-16 111.4 10.3 45 172-217 1-45 (253)
93 TIGR02159 PA_CoA_Oxy4 phenylac 99.2 4.7E-11 1E-15 100.6 9.2 71 87-160 1-72 (146)
94 COG0552 FtsY Signal recognitio 99.2 7.1E-11 1.5E-15 110.7 11.3 167 172-374 138-316 (340)
95 PRK12724 flagellar biosynthesi 99.2 2.5E-10 5.3E-15 111.6 14.4 165 174-381 224-403 (432)
96 TIGR00313 cobQ cobyric acid sy 99.2 3.2E-10 6.8E-15 114.5 15.7 199 176-382 1-227 (475)
97 PRK05632 phosphate acetyltrans 99.2 4.3E-10 9.4E-15 118.5 17.2 178 172-383 1-200 (684)
98 PRK12727 flagellar biosynthesi 99.1 1E-09 2.2E-14 109.8 15.4 164 173-379 350-526 (559)
99 PRK00784 cobyric acid synthase 99.1 1.1E-09 2.4E-14 111.1 15.7 196 172-382 1-230 (488)
100 PRK05703 flhF flagellar biosyn 99.1 4.5E-10 9.7E-15 111.6 11.7 160 173-374 221-389 (424)
101 PRK12723 flagellar biosynthesi 99.1 2.9E-09 6.2E-14 104.2 14.9 160 173-374 174-344 (388)
102 PRK06731 flhF flagellar biosyn 99.0 6.9E-09 1.5E-13 96.8 15.9 170 173-381 75-255 (270)
103 TIGR00345 arsA arsenite-activa 99.0 2.2E-09 4.7E-14 101.6 12.4 74 306-379 190-267 (284)
104 COG1703 ArgK Putative periplas 99.0 1.1E-08 2.5E-13 94.4 15.0 153 169-346 47-201 (323)
105 PRK14723 flhF flagellar biosyn 99.0 8.7E-09 1.9E-13 107.7 14.6 167 173-379 185-365 (767)
106 COG1797 CobB Cobyrinic acid a, 99.0 7.5E-09 1.6E-13 100.2 12.7 167 175-382 2-182 (451)
107 TIGR00750 lao LAO/AO transport 99.0 2.3E-08 5E-13 95.4 16.1 152 172-347 33-185 (300)
108 TIGR00379 cobB cobyrinic acid 98.9 1.1E-08 2.3E-13 102.9 13.8 170 176-383 2-182 (449)
109 PRK13505 formate--tetrahydrofo 98.9 1E-08 2.3E-13 102.3 11.8 50 172-224 54-106 (557)
110 PF03308 ArgK: ArgK protein; 98.9 5.3E-09 1.2E-13 95.3 8.0 150 172-346 28-179 (266)
111 PRK14722 flhF flagellar biosyn 98.9 8.3E-08 1.8E-12 93.3 16.0 168 173-380 137-324 (374)
112 PRK09435 membrane ATPase/prote 98.8 7.7E-08 1.7E-12 92.3 15.0 153 171-348 54-208 (332)
113 PRK14493 putative bifunctional 98.8 5.7E-08 1.2E-12 91.0 12.2 40 173-214 1-40 (274)
114 PRK06278 cobyrinic acid a,c-di 98.8 3.1E-07 6.8E-12 92.1 16.8 169 169-377 234-418 (476)
115 PRK06995 flhF flagellar biosyn 98.8 1.7E-07 3.7E-12 93.9 14.7 160 173-374 256-423 (484)
116 PRK13896 cobyrinic acid a,c-di 98.7 1.1E-07 2.5E-12 94.2 12.4 168 174-382 2-178 (433)
117 KOG0781 Signal recognition par 98.7 4.5E-08 9.7E-13 95.2 8.9 237 74-346 292-542 (587)
118 TIGR03499 FlhF flagellar biosy 98.6 7.5E-08 1.6E-12 91.0 7.0 42 173-215 194-237 (282)
119 COG1419 FlhF Flagellar GTP-bin 98.6 6.2E-07 1.3E-11 86.9 12.7 168 173-382 203-383 (407)
120 COG1492 CobQ Cobyric acid synt 98.4 5.9E-07 1.3E-11 88.7 8.3 200 174-383 2-231 (486)
121 PRK14721 flhF flagellar biosyn 98.2 3.1E-05 6.7E-10 76.7 15.4 160 173-374 191-358 (420)
122 KOG1532 GTPase XAB1, interacts 98.2 1.3E-05 2.8E-10 73.3 10.3 160 173-348 19-195 (366)
123 cd04170 EF-G_bact Elongation f 98.1 3.9E-05 8.5E-10 72.0 11.4 96 278-380 61-157 (268)
124 COG1341 Predicted GTPase or GT 98.0 0.00015 3.3E-09 70.2 13.5 43 174-217 74-116 (398)
125 cd00477 FTHFS Formyltetrahydro 97.9 2E-05 4.4E-10 78.2 6.7 52 172-226 37-91 (524)
126 PF03029 ATP_bind_1: Conserved 97.9 6.8E-06 1.5E-10 75.7 2.8 39 181-219 3-41 (238)
127 PRK13506 formate--tetrahydrofo 97.9 2.8E-05 6E-10 78.0 6.6 52 172-226 53-107 (578)
128 cd04168 TetM_like Tet(M)-like 97.9 0.00034 7.3E-09 64.4 13.4 89 278-373 61-149 (237)
129 cd04169 RF3 RF3 subfamily. Pe 97.8 0.00029 6.3E-09 66.1 13.0 94 278-378 68-162 (267)
130 PLN02974 adenosylmethionine-8- 97.8 0.00054 1.2E-08 73.5 16.5 83 279-374 183-273 (817)
131 cd01886 EF-G Elongation factor 97.8 0.0003 6.4E-09 66.1 12.2 95 278-379 61-156 (270)
132 COG0529 CysC Adenylylsulfate k 97.8 3.3E-05 7.2E-10 66.4 4.8 54 170-224 20-73 (197)
133 COG0857 Pta BioD-like N-termin 97.7 0.00024 5.2E-09 68.7 10.6 193 172-383 1-207 (354)
134 COG1763 MobB Molybdopterin-gua 97.7 0.00037 7.9E-09 59.9 10.0 42 172-214 1-42 (161)
135 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00052 1.1E-08 61.3 10.6 69 279-347 63-131 (195)
136 TIGR00176 mobB molybdopterin-g 97.6 0.00022 4.8E-09 61.2 7.9 39 175-214 1-39 (155)
137 PRK14494 putative molybdopteri 97.6 0.00033 7.1E-09 63.9 8.6 38 173-211 1-38 (229)
138 cd00881 GTP_translation_factor 97.6 0.00053 1.2E-08 59.9 9.7 69 279-348 60-128 (189)
139 cd04167 Snu114p Snu114p subfam 97.5 0.00067 1.5E-08 61.3 10.0 68 279-347 69-136 (213)
140 cd04163 Era Era subfamily. Er 97.5 0.0017 3.6E-08 55.0 11.9 68 279-347 49-124 (168)
141 cd03116 MobB Molybdenum is an 97.5 0.00045 9.7E-09 59.5 7.5 41 173-214 1-41 (159)
142 PF01583 APS_kinase: Adenylyls 97.4 0.00026 5.5E-09 60.6 5.5 44 174-218 3-46 (156)
143 PRK00089 era GTPase Era; Revie 97.4 0.0029 6.3E-08 60.0 13.3 68 279-347 51-126 (292)
144 PRK00741 prfC peptide chain re 97.4 0.0015 3.3E-08 67.0 11.7 94 278-378 76-170 (526)
145 cd04166 CysN_ATPS CysN_ATPS su 97.4 0.0009 1.9E-08 60.3 8.6 68 279-347 75-143 (208)
146 PRK14495 putative molybdopteri 97.3 0.00076 1.6E-08 66.6 8.4 39 173-212 1-39 (452)
147 cd03112 CobW_like The function 97.3 0.0036 7.7E-08 53.8 11.8 141 178-345 4-157 (158)
148 TIGR02237 recomb_radB DNA repa 97.3 0.00055 1.2E-08 61.5 7.0 38 174-212 13-50 (209)
149 PF00009 GTP_EFTU: Elongation 97.3 0.0014 3.1E-08 57.8 9.3 68 279-347 68-135 (188)
150 cd01120 RecA-like_NTPases RecA 97.3 0.0017 3.8E-08 55.0 9.4 37 179-215 4-40 (165)
151 PRK04296 thymidine kinase; Pro 97.3 0.0073 1.6E-07 53.6 13.6 35 174-209 3-37 (190)
152 PF03205 MobB: Molybdopterin g 97.3 0.00074 1.6E-08 56.9 6.7 43 174-217 1-44 (140)
153 TIGR00503 prfC peptide chain r 97.3 0.002 4.3E-08 66.2 11.0 87 278-371 77-163 (527)
154 cd01887 IF2_eIF5B IF2/eIF5B (i 97.3 0.0022 4.7E-08 54.9 9.6 68 279-347 48-115 (168)
155 PRK10751 molybdopterin-guanine 97.3 0.0019 4.2E-08 56.2 9.2 42 172-214 5-46 (173)
156 PF02421 FeoB_N: Ferrous iron 97.3 0.0013 2.8E-08 56.3 7.9 92 279-378 45-144 (156)
157 PRK12740 elongation factor G; 97.2 0.0018 4E-08 68.7 10.5 94 278-378 57-151 (668)
158 KOG1533 Predicted GTPase [Gene 97.2 0.00044 9.5E-09 62.1 4.8 100 181-292 9-108 (290)
159 PRK00889 adenylylsulfate kinas 97.2 0.00071 1.5E-08 59.1 5.9 41 173-214 4-44 (175)
160 PRK00007 elongation factor G; 97.2 0.0043 9.2E-08 66.1 12.7 94 278-378 72-166 (693)
161 TIGR00490 aEF-2 translation el 97.2 0.0018 3.9E-08 69.2 9.8 70 278-348 83-152 (720)
162 COG1618 Predicted nucleotide k 97.2 0.0034 7.3E-08 53.5 9.3 39 171-210 3-41 (179)
163 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.002 4.3E-08 55.4 7.9 33 175-208 4-36 (159)
164 COG3367 Uncharacterized conser 97.1 0.0067 1.5E-07 57.1 12.0 169 173-382 148-330 (339)
165 PRK08233 hypothetical protein; 97.1 0.0021 4.5E-08 56.2 8.3 37 174-213 4-40 (182)
166 COG1159 Era GTPase [General fu 97.1 0.0086 1.9E-07 56.0 12.1 113 175-348 8-128 (298)
167 cd04171 SelB SelB subfamily. 97.1 0.0029 6.3E-08 53.8 8.5 68 280-347 50-117 (164)
168 cd04165 GTPBP1_like GTPBP1-lik 97.1 0.0091 2E-07 54.5 11.9 67 279-347 82-151 (224)
169 PRK00049 elongation factor Tu; 97.0 0.0055 1.2E-07 60.8 11.2 68 279-347 73-141 (396)
170 cd01885 EF2 EF2 (for archaea a 97.0 0.0063 1.4E-07 55.4 10.7 68 279-347 71-138 (222)
171 PRK00093 GTP-binding protein D 97.0 0.0027 5.8E-08 63.8 9.1 68 279-347 47-122 (435)
172 cd01894 EngA1 EngA1 subfamily. 97.0 0.0051 1.1E-07 51.8 9.4 69 279-348 43-119 (157)
173 PF07755 DUF1611: Protein of u 97.0 0.0047 1E-07 58.3 9.8 164 172-375 111-292 (301)
174 cd01125 repA Hexameric Replica 97.0 0.0013 2.8E-08 60.6 5.9 41 175-215 2-54 (239)
175 PRK12739 elongation factor G; 97.0 0.007 1.5E-07 64.5 12.2 94 278-378 70-164 (691)
176 COG2403 Predicted GTPase [Gene 97.0 0.0044 9.4E-08 59.4 9.2 37 174-210 127-163 (449)
177 PLN03127 Elongation factor Tu; 97.0 0.011 2.5E-07 59.5 12.8 69 279-347 122-190 (447)
178 PRK14489 putative bifunctional 96.9 0.0031 6.6E-08 62.0 8.4 42 172-214 204-245 (366)
179 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0025 5.5E-08 55.9 7.0 142 177-347 3-154 (178)
180 PRK07667 uridine kinase; Provi 96.9 0.0019 4.2E-08 57.4 6.3 39 174-213 18-56 (193)
181 cd01394 radB RadB. The archaea 96.9 0.0017 3.7E-08 58.8 6.0 39 175-213 20-58 (218)
182 COG1066 Sms Predicted ATP-depe 96.9 0.00072 1.6E-08 65.6 3.6 37 175-212 94-130 (456)
183 PRK06067 flagellar accessory p 96.9 0.0028 6.1E-08 58.1 7.3 38 174-212 26-63 (234)
184 cd01890 LepA LepA subfamily. 96.9 0.011 2.3E-07 51.3 10.6 85 279-371 65-150 (179)
185 cd03113 CTGs CTP synthetase (C 96.9 0.023 5E-07 51.8 12.7 180 176-378 3-237 (255)
186 COG1160 Predicted GTPases [Gen 96.9 0.0089 1.9E-07 59.0 10.9 70 278-348 48-126 (444)
187 cd01891 TypA_BipA TypA (tyrosi 96.9 0.0042 9.1E-08 55.1 7.8 68 279-347 63-130 (194)
188 TIGR00436 era GTP-binding prot 96.9 0.018 3.9E-07 54.1 12.4 67 279-347 46-120 (270)
189 KOG0635 Adenosine 5'-phosphosu 96.8 0.003 6.5E-08 53.0 5.9 55 168-223 26-80 (207)
190 PRK03846 adenylylsulfate kinas 96.8 0.0025 5.4E-08 56.9 5.9 43 171-214 22-64 (198)
191 PRK10218 GTP-binding protein; 96.8 0.018 4E-07 60.0 13.0 70 278-348 65-134 (607)
192 PRK13351 elongation factor G; 96.8 0.014 3E-07 62.2 12.3 94 278-378 70-164 (687)
193 TIGR00484 EF-G translation elo 96.8 0.015 3.2E-07 62.0 12.3 94 278-378 72-166 (689)
194 PRK09361 radB DNA repair and r 96.8 0.003 6.6E-08 57.4 6.2 37 174-211 24-60 (225)
195 TIGR00708 cobA cob(I)alamin ad 96.8 0.008 1.7E-07 52.3 8.5 35 175-210 7-41 (173)
196 TIGR02012 tigrfam_recA protein 96.8 0.0028 6.1E-08 60.7 6.1 38 174-212 56-93 (321)
197 PRK05986 cob(I)alamin adenolsy 96.7 0.0068 1.5E-07 53.5 7.9 35 175-210 24-58 (191)
198 cd01889 SelB_euk SelB subfamil 96.7 0.008 1.7E-07 53.2 8.5 67 279-347 66-133 (192)
199 TIGR01618 phage_P_loop phage n 96.7 0.0067 1.5E-07 55.0 8.0 34 172-213 11-44 (220)
200 PRK15453 phosphoribulokinase; 96.7 0.0033 7.2E-08 58.8 6.1 43 172-215 4-46 (290)
201 cd00154 Rab Rab family. Rab G 96.7 0.031 6.8E-07 46.6 11.7 91 279-374 47-141 (159)
202 TIGR01394 TypA_BipA GTP-bindin 96.7 0.012 2.6E-07 61.3 10.7 68 278-347 61-129 (594)
203 PRK08533 flagellar accessory p 96.7 0.0052 1.1E-07 56.3 7.1 40 174-214 25-64 (230)
204 PRK12736 elongation factor Tu; 96.7 0.014 3E-07 58.0 10.6 68 279-347 73-141 (394)
205 PRK14491 putative bifunctional 96.6 0.0067 1.4E-07 63.3 8.5 42 172-214 9-50 (597)
206 smart00382 AAA ATPases associa 96.6 0.0052 1.1E-07 50.1 6.3 40 174-214 3-42 (148)
207 TIGR02034 CysN sulfate adenyly 96.6 0.0047 1E-07 61.5 6.7 68 279-347 78-146 (406)
208 PRK12735 elongation factor Tu; 96.6 0.018 4E-07 57.1 10.8 68 279-347 73-141 (396)
209 PRK06696 uridine kinase; Valid 96.6 0.0045 9.7E-08 56.4 5.9 40 174-214 23-62 (223)
210 TIGR00485 EF-Tu translation el 96.6 0.021 4.5E-07 56.7 11.1 68 279-347 73-141 (394)
211 PRK05973 replicative DNA helic 96.5 0.0038 8.3E-08 57.3 5.3 40 175-214 65-104 (237)
212 PRK06762 hypothetical protein; 96.5 0.0036 7.7E-08 54.0 4.9 39 172-214 1-39 (166)
213 PTZ00141 elongation factor 1- 96.5 0.0063 1.4E-07 61.3 7.3 69 278-346 82-157 (446)
214 cd01124 KaiC KaiC is a circadi 96.5 0.0038 8.2E-08 54.7 5.1 37 178-214 3-39 (187)
215 cd02028 UMPK_like Uridine mono 96.5 0.0037 8.1E-08 54.9 5.0 38 176-214 2-39 (179)
216 cd04139 RalA_RalB RalA/RalB su 96.5 0.053 1.1E-06 45.9 12.1 91 279-374 46-141 (164)
217 smart00175 RAB Rab subfamily o 96.5 0.046 1E-06 46.3 11.7 90 280-374 48-141 (164)
218 cd01883 EF1_alpha Eukaryotic e 96.5 0.0067 1.5E-07 55.0 6.7 69 279-347 75-150 (219)
219 CHL00071 tufA elongation facto 96.5 0.02 4.3E-07 57.1 10.6 68 279-347 73-141 (409)
220 cd01393 recA_like RecA is a b 96.5 0.0081 1.8E-07 54.5 7.2 38 174-212 20-63 (226)
221 PRK07952 DNA replication prote 96.5 0.0042 9.2E-08 57.3 5.2 34 177-210 102-135 (244)
222 TIGR02655 circ_KaiC circadian 96.5 0.0055 1.2E-07 62.5 6.4 40 175-214 264-303 (484)
223 PF13479 AAA_24: AAA domain 96.4 0.013 2.8E-07 53.0 8.1 31 175-214 5-35 (213)
224 cd04127 Rab27A Rab27a subfamil 96.4 0.064 1.4E-06 46.4 12.3 91 279-374 61-156 (180)
225 cd02029 PRK_like Phosphoribulo 96.4 0.0053 1.1E-07 57.1 5.4 40 175-215 1-40 (277)
226 cd04110 Rab35 Rab35 subfamily. 96.4 0.051 1.1E-06 48.3 11.6 89 280-373 54-145 (199)
227 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.4 0.075 1.6E-06 45.4 12.3 90 280-374 50-143 (166)
228 cd00880 Era_like Era (E. coli 96.4 0.025 5.4E-07 47.0 9.1 68 280-348 44-118 (163)
229 PHA02542 41 41 helicase; Provi 96.4 0.0053 1.1E-07 62.2 5.6 43 175-217 191-233 (473)
230 cd01866 Rab2 Rab2 subfamily. 96.4 0.048 1E-06 46.8 11.0 89 280-373 52-144 (168)
231 cd02027 APSK Adenosine 5'-phos 96.4 0.005 1.1E-07 52.4 4.6 38 176-214 2-39 (149)
232 TIGR02475 CobW cobalamin biosy 96.3 0.073 1.6E-06 51.7 13.1 40 176-217 6-45 (341)
233 cd04160 Arfrp1 Arfrp1 subfamil 96.3 0.065 1.4E-06 45.7 11.5 68 279-347 48-120 (167)
234 cd04137 RheB Rheb (Ras Homolog 96.3 0.097 2.1E-06 45.4 12.7 90 280-374 48-142 (180)
235 cd04145 M_R_Ras_like M-Ras/R-R 96.3 0.1 2.2E-06 44.2 12.7 89 280-373 49-142 (164)
236 cd01121 Sms Sms (bacterial rad 96.3 0.0059 1.3E-07 59.9 5.4 38 175-212 83-120 (372)
237 PRK05480 uridine/cytidine kina 96.3 0.0088 1.9E-07 53.8 6.2 40 172-214 5-44 (209)
238 PF01926 MMR_HSR1: 50S ribosom 96.3 0.035 7.6E-07 44.6 9.2 63 279-343 45-116 (116)
239 cd01860 Rab5_related Rab5-rela 96.3 0.066 1.4E-06 45.4 11.3 90 279-372 48-140 (163)
240 TIGR03594 GTPase_EngA ribosome 96.3 0.011 2.5E-07 59.1 7.4 69 279-348 45-121 (429)
241 PRK00652 lpxK tetraacyldisacch 96.3 0.021 4.5E-07 55.0 8.8 40 174-213 50-90 (325)
242 PF13207 AAA_17: AAA domain; P 96.3 0.0058 1.3E-07 49.5 4.4 32 175-210 1-32 (121)
243 PF06745 KaiC: KaiC; InterPro 96.3 0.0037 8E-08 56.9 3.5 40 174-214 20-60 (226)
244 PLN03126 Elongation factor Tu; 96.3 0.027 5.8E-07 57.2 10.0 68 279-347 142-210 (478)
245 cd04106 Rab23_lke Rab23-like s 96.3 0.075 1.6E-06 45.0 11.5 91 279-374 49-142 (162)
246 cd01888 eIF2_gamma eIF2-gamma 96.2 0.034 7.4E-07 49.7 9.6 67 281-347 83-150 (203)
247 PRK09554 feoB ferrous iron tra 96.2 0.071 1.5E-06 57.3 13.4 88 279-374 48-147 (772)
248 PRK15494 era GTPase Era; Provi 96.2 0.06 1.3E-06 52.3 11.8 67 279-347 98-173 (339)
249 cd01882 BMS1 Bms1. Bms1 is an 96.2 0.06 1.3E-06 49.1 11.1 65 280-347 82-146 (225)
250 cd04175 Rap1 Rap1 subgroup. T 96.2 0.14 2.9E-06 43.6 12.7 91 279-374 47-142 (164)
251 PRK07414 cob(I)yrinic acid a,c 96.2 0.031 6.8E-07 48.7 8.5 35 175-210 23-57 (178)
252 KOG1534 Putative transcription 96.2 0.01 2.3E-07 52.6 5.5 44 174-217 3-46 (273)
253 cd01867 Rab8_Rab10_Rab13_like 96.2 0.1 2.2E-06 44.8 11.9 89 280-373 51-143 (167)
254 PF00154 RecA: recA bacterial 96.2 0.033 7.2E-07 53.4 9.4 91 173-293 53-144 (322)
255 COG2874 FlaH Predicted ATPases 96.2 0.017 3.6E-07 51.6 6.8 104 175-290 29-133 (235)
256 cd04161 Arl2l1_Arl13_like Arl2 96.2 0.11 2.3E-06 44.8 12.0 69 279-348 41-114 (167)
257 cd04125 RabA_like RabA-like su 96.1 0.16 3.4E-06 44.5 13.3 92 279-374 47-141 (188)
258 PRK11537 putative GTP-binding 96.1 0.047 1E-06 52.5 10.4 145 176-347 6-163 (318)
259 TIGR00455 apsK adenylylsulfate 96.1 0.012 2.5E-07 51.9 5.9 43 171-214 16-58 (184)
260 cd01864 Rab19 Rab19 subfamily. 96.1 0.065 1.4E-06 45.7 10.5 86 280-370 51-140 (165)
261 PF13481 AAA_25: AAA domain; P 96.1 0.0084 1.8E-07 52.9 5.0 40 175-214 33-82 (193)
262 PLN00043 elongation factor 1-a 96.1 0.022 4.8E-07 57.4 8.5 70 278-347 82-158 (447)
263 PRK04328 hypothetical protein; 96.1 0.017 3.7E-07 53.6 7.1 39 174-213 24-62 (249)
264 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.0098 2.1E-07 55.5 5.5 38 175-212 37-74 (259)
265 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.1 0.12 2.5E-06 44.9 12.0 91 279-374 48-143 (172)
266 cd04118 Rab24 Rab24 subfamily. 96.1 0.093 2E-06 46.1 11.6 93 280-373 49-144 (193)
267 cd01868 Rab11_like Rab11-like. 96.1 0.083 1.8E-06 45.0 10.9 89 280-373 51-143 (165)
268 COG4108 PrfC Peptide chain rel 96.1 0.035 7.6E-07 54.5 9.1 86 279-371 79-164 (528)
269 cd01861 Rab6 Rab6 subfamily. 96.1 0.15 3.1E-06 43.1 12.3 89 280-373 48-140 (161)
270 PRK05541 adenylylsulfate kinas 96.1 0.012 2.7E-07 51.2 5.7 39 173-212 7-45 (176)
271 PRK05433 GTP-binding protein L 96.1 0.052 1.1E-06 56.8 11.2 68 279-347 72-139 (600)
272 COG0468 RecA RecA/RadA recombi 96.1 0.059 1.3E-06 50.6 10.4 38 174-212 61-98 (279)
273 smart00173 RAS Ras subfamily o 96.1 0.15 3.3E-06 43.2 12.4 89 280-373 47-140 (164)
274 PF13245 AAA_19: Part of AAA d 96.0 0.014 2.9E-07 43.7 5.0 36 175-210 11-50 (76)
275 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.011 2.4E-07 53.9 5.6 38 174-212 20-63 (235)
276 TIGR03574 selen_PSTK L-seryl-t 96.0 0.0079 1.7E-07 55.7 4.5 36 178-213 3-38 (249)
277 cd04124 RabL2 RabL2 subfamily. 96.0 0.086 1.9E-06 44.9 10.7 67 279-346 47-116 (161)
278 TIGR00073 hypB hydrogenase acc 96.0 0.05 1.1E-06 48.8 9.5 40 172-213 21-60 (207)
279 cd04113 Rab4 Rab4 subfamily. 96.0 0.11 2.4E-06 43.9 11.3 90 279-373 47-140 (161)
280 PRK03003 GTP-binding protein D 96.0 0.04 8.7E-07 56.0 9.8 68 279-347 84-159 (472)
281 PTZ00416 elongation factor 2; 96.0 0.031 6.8E-07 60.7 9.5 68 279-347 90-157 (836)
282 PRK10463 hydrogenase nickel in 96.0 0.029 6.3E-07 52.9 8.0 39 174-214 105-143 (290)
283 PHA00729 NTP-binding motif con 96.0 0.01 2.2E-07 53.8 4.9 24 175-199 19-42 (226)
284 TIGR00682 lpxK tetraacyldisacc 96.0 0.053 1.2E-06 51.9 9.9 39 174-212 29-68 (311)
285 TIGR03575 selen_PSTK_euk L-ser 95.9 0.009 2E-07 57.7 4.6 39 177-215 2-41 (340)
286 cd01878 HflX HflX subfamily. 95.9 0.14 3E-06 45.5 12.1 68 280-348 88-167 (204)
287 PRK09302 circadian clock prote 95.9 0.017 3.7E-07 59.3 6.8 40 174-214 32-72 (509)
288 cd04101 RabL4 RabL4 (Rab-like4 95.9 0.18 3.8E-06 42.8 12.2 90 279-373 50-142 (164)
289 cd01122 GP4d_helicase GP4d_hel 95.9 0.012 2.7E-07 55.0 5.2 39 175-213 31-70 (271)
290 smart00178 SAR Sar1p-like memb 95.9 0.12 2.6E-06 45.3 11.2 83 279-371 59-146 (184)
291 PF01695 IstB_IS21: IstB-like 95.9 0.016 3.5E-07 50.9 5.6 37 174-211 48-84 (178)
292 COG0523 Putative GTPases (G3E 95.9 0.16 3.5E-06 48.9 12.8 143 177-348 4-159 (323)
293 COG3598 RepA RecA-family ATPas 95.9 0.0083 1.8E-07 56.6 3.9 43 175-217 90-142 (402)
294 cd02019 NK Nucleoside/nucleoti 95.9 0.017 3.6E-07 42.2 4.8 32 176-210 2-33 (69)
295 cd04136 Rap_like Rap-like subf 95.9 0.18 3.9E-06 42.6 12.1 89 280-373 48-141 (163)
296 cd04112 Rab26 Rab26 subfamily. 95.9 0.11 2.5E-06 45.7 11.1 89 280-373 49-141 (191)
297 PF00485 PRK: Phosphoribulokin 95.8 0.013 2.9E-07 52.0 4.9 38 175-213 1-42 (194)
298 cd00878 Arf_Arl Arf (ADP-ribos 95.8 0.17 3.8E-06 42.6 11.7 68 280-348 42-114 (158)
299 cd04115 Rab33B_Rab33A Rab33B/R 95.8 0.19 4.2E-06 43.1 12.1 91 279-374 49-145 (170)
300 cd04122 Rab14 Rab14 subfamily. 95.8 0.22 4.8E-06 42.5 12.4 91 279-373 49-142 (166)
301 TIGR00487 IF-2 translation ini 95.8 0.1 2.2E-06 54.5 11.9 65 282-347 136-200 (587)
302 cd00984 DnaB_C DnaB helicase C 95.8 0.015 3.2E-07 53.4 5.3 40 175-214 14-54 (242)
303 cd04109 Rab28 Rab28 subfamily. 95.8 0.24 5.2E-06 44.6 13.0 90 280-373 49-144 (215)
304 cd01895 EngA2 EngA2 subfamily. 95.8 0.15 3.2E-06 43.3 11.2 68 279-347 48-126 (174)
305 cd04140 ARHI_like ARHI subfami 95.8 0.3 6.5E-06 41.6 13.1 90 279-373 47-143 (165)
306 cd04148 RGK RGK subfamily. Th 95.8 0.29 6.2E-06 44.4 13.5 88 279-373 48-141 (221)
307 PRK05439 pantothenate kinase; 95.8 0.02 4.4E-07 54.6 6.1 42 172-214 85-128 (311)
308 TIGR00475 selB selenocysteine- 95.7 0.029 6.2E-07 58.5 7.6 68 280-347 49-116 (581)
309 cd04154 Arl2 Arl2 subfamily. 95.7 0.15 3.2E-06 44.0 11.0 68 279-347 56-128 (173)
310 COG1484 DnaC DNA replication p 95.7 0.018 3.8E-07 53.6 5.2 37 173-210 105-141 (254)
311 PRK12317 elongation factor 1-a 95.7 0.071 1.5E-06 53.5 10.0 69 279-347 82-152 (425)
312 PRK10512 selenocysteinyl-tRNA- 95.7 0.05 1.1E-06 57.1 9.0 66 281-347 51-117 (614)
313 TIGR01393 lepA GTP-binding pro 95.6 0.11 2.3E-06 54.5 11.2 86 279-371 68-153 (595)
314 PLN03110 Rab GTPase; Provision 95.6 0.19 4.2E-06 45.3 11.7 90 280-374 60-153 (216)
315 cd01898 Obg Obg subfamily. Th 95.6 0.25 5.4E-06 42.1 11.8 67 281-348 48-128 (170)
316 cd00876 Ras Ras family. The R 95.6 0.3 6.5E-06 40.9 12.2 89 280-373 46-139 (160)
317 cd04138 H_N_K_Ras_like H-Ras/N 95.6 0.48 1E-05 39.7 13.4 87 281-373 49-140 (162)
318 COG0467 RAD55 RecA-superfamily 95.5 0.026 5.6E-07 52.6 5.8 43 174-217 24-66 (260)
319 cd04108 Rab36_Rab34 Rab34/Rab3 95.5 0.18 3.9E-06 43.6 10.7 92 280-373 48-143 (170)
320 PF03796 DnaB_C: DnaB-like hel 95.5 0.025 5.4E-07 52.7 5.6 40 175-214 20-60 (259)
321 cd04155 Arl3 Arl3 subfamily. 95.5 0.26 5.7E-06 42.2 11.7 82 279-370 56-142 (173)
322 smart00177 ARF ARF-like small 95.5 0.68 1.5E-05 40.1 14.3 83 279-370 55-141 (175)
323 cd02025 PanK Pantothenate kina 95.5 0.022 4.9E-07 51.7 5.0 39 175-214 1-41 (220)
324 PRK06526 transposase; Provisio 95.5 0.013 2.8E-07 54.5 3.5 36 174-210 99-134 (254)
325 cd01865 Rab3 Rab3 subfamily. 95.4 0.42 9E-06 40.7 12.7 90 280-373 49-141 (165)
326 PLN03118 Rab family protein; P 95.4 0.15 3.3E-06 45.7 10.3 90 279-373 60-155 (211)
327 PRK05306 infB translation init 95.4 0.13 2.8E-06 55.3 11.3 68 279-347 335-402 (787)
328 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.033 7.2E-07 50.7 6.0 39 174-213 21-59 (229)
329 COG4088 Predicted nucleotide k 95.4 0.017 3.7E-07 51.3 3.7 39 175-214 3-41 (261)
330 cd00983 recA RecA is a bacter 95.3 0.032 6.9E-07 53.6 5.7 38 174-212 56-93 (325)
331 PTZ00133 ADP-ribosylation fact 95.3 0.56 1.2E-05 41.0 13.3 83 279-371 59-146 (182)
332 COG0050 TufB GTPases - transla 95.3 0.067 1.5E-06 50.0 7.5 70 279-348 73-142 (394)
333 cd04119 RJL RJL (RabJ-Like) su 95.3 0.48 1E-05 40.0 12.6 91 279-373 47-145 (168)
334 cd04107 Rab32_Rab38 Rab38/Rab3 95.3 0.31 6.8E-06 43.2 11.7 86 279-369 48-141 (201)
335 cd02023 UMPK Uridine monophosp 95.3 0.027 5.8E-07 50.1 4.8 37 175-214 1-37 (198)
336 cd04162 Arl9_Arfrp2_like Arl9/ 95.2 0.25 5.4E-06 42.3 10.7 69 279-348 42-113 (164)
337 PRK09183 transposase/IS protei 95.2 0.032 6.8E-07 52.1 5.3 36 174-210 103-138 (259)
338 PF02572 CobA_CobO_BtuR: ATP:c 95.2 0.054 1.2E-06 47.1 6.3 97 175-288 5-104 (172)
339 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.043 9.3E-07 49.8 6.1 38 174-212 17-54 (224)
340 PF01935 DUF87: Domain of unkn 95.2 0.033 7.1E-07 50.7 5.3 39 173-212 23-62 (229)
341 cd01863 Rab18 Rab18 subfamily. 95.2 0.55 1.2E-05 39.6 12.7 89 279-373 47-140 (161)
342 KOG2749 mRNA cleavage and poly 95.2 0.038 8.3E-07 52.8 5.7 45 173-218 103-147 (415)
343 TIGR00041 DTMP_kinase thymidyl 95.2 0.039 8.4E-07 48.8 5.6 36 174-210 4-39 (195)
344 TIGR03600 phage_DnaB phage rep 95.1 0.035 7.5E-07 55.6 5.7 40 175-214 195-235 (421)
345 TIGR02655 circ_KaiC circadian 95.1 0.043 9.4E-07 56.0 6.4 38 174-212 22-60 (484)
346 CHL00189 infB translation init 95.1 0.088 1.9E-06 56.1 8.8 68 279-347 293-360 (742)
347 TIGR02238 recomb_DMC1 meiotic 95.1 0.12 2.5E-06 49.7 8.8 38 175-212 97-140 (313)
348 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.1 0.72 1.6E-05 39.8 13.2 68 279-347 57-129 (174)
349 TIGR03598 GTPase_YsxC ribosome 95.1 0.23 5E-06 43.2 10.1 42 305-347 101-142 (179)
350 PRK12377 putative replication 95.1 0.038 8.2E-07 51.2 5.3 36 175-211 103-138 (248)
351 PRK00093 GTP-binding protein D 95.0 0.16 3.5E-06 51.0 10.1 68 279-347 219-297 (435)
352 cd04158 ARD1 ARD1 subfamily. 95.0 0.31 6.6E-06 41.9 10.6 69 279-347 41-113 (169)
353 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.05 1.1E-06 50.0 5.9 40 174-214 22-61 (237)
354 cd01672 TMPK Thymidine monopho 95.0 0.042 9.1E-07 48.4 5.2 35 175-210 2-36 (200)
355 cd04114 Rab30 Rab30 subfamily. 95.0 0.46 1E-05 40.4 11.7 66 281-347 56-125 (169)
356 PRK06835 DNA replication prote 95.0 0.032 7E-07 53.8 4.8 38 173-211 183-220 (329)
357 cd04117 Rab15 Rab15 subfamily. 95.0 0.41 8.9E-06 40.7 11.3 90 280-373 48-140 (161)
358 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.043 9.4E-07 49.6 5.4 39 174-213 39-77 (226)
359 PRK06217 hypothetical protein; 94.9 0.037 8.1E-07 48.6 4.7 33 174-212 2-34 (183)
360 COG0572 Udk Uridine kinase [Nu 94.9 0.07 1.5E-06 48.1 6.4 40 174-216 9-48 (218)
361 PF08433 KTI12: Chromatin asso 94.9 0.036 7.9E-07 52.0 4.7 37 175-212 3-39 (270)
362 cd04176 Rap2 Rap2 subgroup. T 94.9 0.67 1.5E-05 39.1 12.3 88 281-373 49-141 (163)
363 PRK07560 elongation factor EF- 94.9 0.11 2.4E-06 55.7 9.0 68 279-347 85-152 (731)
364 PLN00116 translation elongatio 94.9 0.11 2.4E-06 56.6 9.0 67 280-347 97-163 (843)
365 cd04142 RRP22 RRP22 subfamily. 94.9 0.76 1.6E-05 40.9 13.0 68 280-348 48-130 (198)
366 COG4240 Predicted kinase [Gene 94.9 0.043 9.3E-07 49.5 4.7 38 175-212 51-89 (300)
367 COG0480 FusA Translation elong 94.8 0.28 6E-06 52.0 11.5 94 278-378 72-167 (697)
368 cd04111 Rab39 Rab39 subfamily. 94.8 0.78 1.7E-05 41.2 13.1 91 280-374 51-145 (211)
369 smart00174 RHO Rho (Ras homolo 94.8 0.21 4.6E-06 42.8 9.1 69 279-348 44-116 (174)
370 PRK05595 replicative DNA helic 94.8 0.047 1E-06 55.1 5.6 39 175-213 202-241 (444)
371 PLN00223 ADP-ribosylation fact 94.8 1.1 2.4E-05 39.1 13.8 84 279-371 59-146 (181)
372 cd04146 RERG_RasL11_like RERG/ 94.8 0.37 8.1E-06 40.9 10.6 89 280-373 46-141 (165)
373 cd01897 NOG NOG1 is a nucleola 94.8 0.6 1.3E-05 39.7 11.9 68 279-347 45-126 (168)
374 cd00009 AAA The AAA+ (ATPases 94.8 0.056 1.2E-06 44.3 5.2 40 174-214 20-59 (151)
375 PRK09518 bifunctional cytidyla 94.8 0.22 4.7E-06 53.4 10.8 68 279-347 321-396 (712)
376 cd01862 Rab7 Rab7 subfamily. 94.8 0.39 8.5E-06 40.9 10.6 66 281-347 49-122 (172)
377 PF01268 FTHFS: Formate--tetra 94.7 0.034 7.4E-07 56.3 4.3 51 171-224 52-105 (557)
378 cd04120 Rab12 Rab12 subfamily. 94.7 0.66 1.4E-05 41.5 12.3 68 279-347 47-118 (202)
379 TIGR02729 Obg_CgtA Obg family 94.7 0.69 1.5E-05 44.7 13.2 87 281-373 205-307 (329)
380 cd04151 Arl1 Arl1 subfamily. 94.7 0.42 9.1E-06 40.3 10.6 68 279-347 41-113 (158)
381 PRK13507 formate--tetrahydrofo 94.7 0.051 1.1E-06 55.0 5.3 50 172-224 62-114 (587)
382 PRK09354 recA recombinase A; P 94.7 0.059 1.3E-06 52.2 5.6 38 174-212 61-98 (349)
383 cd04132 Rho4_like Rho4-like su 94.7 0.83 1.8E-05 39.7 12.7 94 279-373 47-145 (187)
384 PRK08506 replicative DNA helic 94.7 0.056 1.2E-06 54.9 5.7 40 175-214 193-232 (472)
385 cd01892 Miro2 Miro2 subfamily. 94.6 1.1 2.4E-05 38.4 13.2 86 281-371 54-141 (169)
386 PRK01906 tetraacyldisaccharide 94.6 0.12 2.7E-06 50.0 7.7 41 174-214 57-98 (338)
387 PRK08118 topology modulation p 94.6 0.044 9.6E-07 47.5 4.3 24 174-198 2-25 (167)
388 cd04123 Rab21 Rab21 subfamily. 94.6 0.81 1.7E-05 38.3 12.1 89 280-373 48-140 (162)
389 PRK09270 nucleoside triphospha 94.6 0.07 1.5E-06 48.7 5.7 39 173-212 33-72 (229)
390 KOG0744 AAA+-type ATPase [Post 94.6 0.048 1E-06 51.7 4.5 51 173-225 177-231 (423)
391 TIGR00416 sms DNA repair prote 94.6 0.057 1.2E-06 54.5 5.5 38 175-212 95-132 (454)
392 PRK11823 DNA repair protein Ra 94.5 0.066 1.4E-06 54.0 5.9 38 175-212 81-118 (446)
393 cd04144 Ras2 Ras2 subfamily. 94.5 0.64 1.4E-05 40.8 11.6 89 280-373 46-141 (190)
394 TIGR00554 panK_bact pantothena 94.5 0.08 1.7E-06 50.1 6.0 41 173-214 62-104 (290)
395 PLN02759 Formate--tetrahydrofo 94.5 0.075 1.6E-06 54.3 6.1 50 172-224 68-121 (637)
396 TIGR03594 GTPase_EngA ribosome 94.5 0.18 3.9E-06 50.4 9.0 67 280-347 219-296 (429)
397 PRK06749 replicative DNA helic 94.5 0.059 1.3E-06 54.0 5.3 40 175-214 187-226 (428)
398 PLN02924 thymidylate kinase 94.5 0.079 1.7E-06 48.2 5.7 39 170-209 13-51 (220)
399 PRK00131 aroK shikimate kinase 94.5 0.047 1E-06 47.0 4.1 33 174-212 5-37 (175)
400 PRK08903 DnaA regulatory inact 94.4 0.072 1.6E-06 48.4 5.4 37 175-212 44-80 (227)
401 cd01876 YihA_EngB The YihA (En 94.4 0.51 1.1E-05 39.6 10.4 20 176-196 2-21 (170)
402 PRK04004 translation initiatio 94.4 0.27 5.9E-06 51.3 10.1 65 282-347 72-136 (586)
403 cd04104 p47_IIGP_like p47 (47- 94.4 0.73 1.6E-05 40.9 11.7 63 281-347 52-120 (197)
404 cd04116 Rab9 Rab9 subfamily. 94.4 0.64 1.4E-05 39.6 11.0 86 279-370 52-145 (170)
405 COG0370 FeoB Fe2+ transport sy 94.4 0.52 1.1E-05 49.1 11.8 90 279-376 48-145 (653)
406 PRK08727 hypothetical protein; 94.3 0.065 1.4E-06 49.1 4.9 37 175-212 43-79 (233)
407 PRK09519 recA DNA recombinatio 94.3 0.14 3.1E-06 54.7 8.0 38 175-212 61-98 (790)
408 cd00879 Sar1 Sar1 subfamily. 94.3 0.72 1.6E-05 40.2 11.4 67 280-347 62-133 (190)
409 PRK08939 primosomal protein Dn 94.3 0.071 1.5E-06 51.0 5.2 38 173-211 156-193 (306)
410 PRK08181 transposase; Validate 94.3 0.068 1.5E-06 50.1 5.0 36 174-210 107-142 (269)
411 PRK08760 replicative DNA helic 94.3 0.067 1.5E-06 54.4 5.3 40 175-214 230-270 (476)
412 PRK05642 DNA replication initi 94.3 0.067 1.5E-06 49.1 4.9 37 175-212 47-83 (234)
413 cd04147 Ras_dva Ras-dva subfam 94.3 0.18 3.8E-06 44.8 7.5 66 281-347 47-117 (198)
414 cd04177 RSR1 RSR1 subgroup. R 94.3 0.89 1.9E-05 38.8 11.7 89 280-373 48-142 (168)
415 cd04156 ARLTS1 ARLTS1 subfamil 94.2 0.88 1.9E-05 38.2 11.5 67 280-347 43-114 (160)
416 COG0378 HypB Ni2+-binding GTPa 94.1 0.32 6.9E-06 42.9 8.4 96 173-292 13-108 (202)
417 smart00053 DYNc Dynamin, GTPas 94.1 1 2.2E-05 41.4 12.2 69 280-349 124-207 (240)
418 PLN03046 D-glycerate 3-kinase; 94.1 0.095 2.1E-06 51.9 5.6 41 173-214 212-252 (460)
419 PLN03108 Rab family protein; P 94.1 0.36 7.7E-06 43.3 9.1 88 281-373 55-146 (210)
420 TIGR00235 udk uridine kinase. 94.0 0.082 1.8E-06 47.4 4.9 38 173-213 6-43 (207)
421 cd04159 Arl10_like Arl10-like 94.0 2.7 5.9E-05 34.6 14.0 67 280-347 43-114 (159)
422 TIGR00665 DnaB replicative DNA 94.0 0.094 2E-06 52.7 5.7 40 175-214 196-236 (434)
423 PRK04040 adenylate kinase; Pro 94.0 0.081 1.8E-06 46.8 4.6 31 173-205 2-32 (188)
424 PRK03003 GTP-binding protein D 94.0 0.24 5.3E-06 50.4 8.7 44 302-347 291-335 (472)
425 PRK08006 replicative DNA helic 94.0 0.091 2E-06 53.3 5.6 40 175-214 225-265 (471)
426 PRK07933 thymidylate kinase; V 94.0 0.1 2.3E-06 47.1 5.4 36 175-211 2-37 (213)
427 cd04134 Rho3 Rho3 subfamily. 93.9 0.44 9.6E-06 41.8 9.4 69 279-348 46-118 (189)
428 COG2759 MIS1 Formyltetrahydrof 93.9 0.057 1.2E-06 53.1 3.8 50 172-224 51-103 (554)
429 COG1084 Predicted GTPase [Gene 93.9 0.55 1.2E-05 44.7 10.2 68 279-347 213-293 (346)
430 PF13173 AAA_14: AAA domain 93.9 0.089 1.9E-06 43.3 4.5 39 174-214 3-41 (128)
431 PRK06893 DNA replication initi 93.9 0.089 1.9E-06 48.1 4.9 36 175-211 41-76 (229)
432 PRK06921 hypothetical protein; 93.9 0.11 2.3E-06 48.7 5.5 37 173-210 117-154 (266)
433 KOG0460 Mitochondrial translat 93.9 0.16 3.4E-06 48.5 6.4 66 283-348 119-184 (449)
434 PF06418 CTP_synth_N: CTP synt 93.9 2 4.3E-05 39.8 13.4 43 174-216 2-45 (276)
435 cd04149 Arf6 Arf6 subfamily. 93.9 0.98 2.1E-05 38.8 11.2 68 279-347 51-123 (168)
436 PF05729 NACHT: NACHT domain 93.8 0.075 1.6E-06 45.1 4.1 27 175-202 2-28 (166)
437 PRK11058 GTPase HflX; Provisio 93.8 0.83 1.8E-05 45.8 12.0 65 282-347 246-322 (426)
438 PF12846 AAA_10: AAA-like doma 93.8 0.089 1.9E-06 49.4 4.9 35 176-211 4-38 (304)
439 PTZ00035 Rad51 protein; Provis 93.8 0.11 2.3E-06 50.5 5.4 38 174-212 119-162 (337)
440 COG1663 LpxK Tetraacyldisaccha 93.8 0.42 9E-06 45.8 9.1 41 174-214 48-89 (336)
441 PRK06547 hypothetical protein; 93.8 0.085 1.8E-06 46.0 4.2 36 172-213 14-49 (172)
442 PLN02796 D-glycerate 3-kinase 93.7 0.11 2.4E-06 50.2 5.3 38 174-212 101-138 (347)
443 PRK05748 replicative DNA helic 93.7 0.1 2.2E-06 52.7 5.4 41 175-215 204-245 (448)
444 PRK08840 replicative DNA helic 93.7 0.11 2.4E-06 52.6 5.5 40 175-214 218-258 (464)
445 PRK06904 replicative DNA helic 93.6 0.11 2.3E-06 52.9 5.3 40 175-214 222-262 (472)
446 PTZ00386 formyl tetrahydrofola 93.6 0.1 2.3E-06 53.1 5.1 50 172-224 67-120 (625)
447 cd04164 trmE TrmE (MnmE, ThdF, 93.6 0.73 1.6E-05 38.3 9.7 66 279-347 47-120 (157)
448 PRK05506 bifunctional sulfate 93.6 0.095 2.1E-06 55.3 5.1 45 172-217 459-503 (632)
449 PRK06761 hypothetical protein; 93.6 0.098 2.1E-06 49.3 4.6 39 173-212 3-42 (282)
450 KOG2743 Cobalamin synthesis pr 93.6 1.4 3E-05 41.6 11.8 49 265-315 132-188 (391)
451 PRK08116 hypothetical protein; 93.5 0.12 2.6E-06 48.4 5.2 36 175-211 116-151 (268)
452 PRK07261 topology modulation p 93.5 0.094 2E-06 45.6 4.2 23 175-198 2-24 (171)
453 TIGR00491 aIF-2 translation in 93.5 0.76 1.6E-05 48.0 11.5 65 282-347 70-134 (590)
454 PRK12297 obgE GTPase CgtA; Rev 93.5 1.8 4E-05 43.3 13.7 66 280-346 205-286 (424)
455 cd01874 Cdc42 Cdc42 subfamily. 93.5 0.78 1.7E-05 39.8 10.0 68 279-347 47-118 (175)
456 cd01893 Miro1 Miro1 subfamily. 93.5 1.4 3.1E-05 37.5 11.5 69 279-348 45-117 (166)
457 PLN03187 meiotic recombination 93.5 0.13 2.7E-06 50.0 5.4 38 175-212 127-170 (344)
458 PRK03731 aroL shikimate kinase 93.5 0.098 2.1E-06 45.2 4.2 35 172-212 1-35 (171)
459 cd00882 Ras_like_GTPase Ras-li 93.4 0.37 8.1E-06 39.1 7.6 69 279-348 43-116 (157)
460 cd04126 Rab20 Rab20 subfamily. 93.4 2.5 5.4E-05 38.4 13.5 68 279-347 42-113 (220)
461 PLN03071 GTP-binding nuclear p 93.4 0.57 1.2E-05 42.4 9.3 68 279-347 60-130 (219)
462 COG1936 Predicted nucleotide k 93.4 0.093 2E-06 45.4 3.8 20 175-195 2-21 (180)
463 PRK14490 putative bifunctional 93.4 0.18 4E-06 49.5 6.4 37 174-212 6-42 (369)
464 PTZ00301 uridine kinase; Provi 93.4 0.21 4.6E-06 45.0 6.3 40 174-214 4-45 (210)
465 PRK05537 bifunctional sulfate 93.4 0.12 2.6E-06 53.7 5.3 41 173-214 392-433 (568)
466 PRK12298 obgE GTPase CgtA; Rev 93.3 1.1 2.5E-05 44.3 11.9 65 282-347 208-288 (390)
467 PRK06321 replicative DNA helic 93.3 0.13 2.9E-06 52.1 5.5 40 175-214 227-267 (472)
468 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.3 1.9 4E-05 39.2 12.4 95 279-374 47-154 (222)
469 PF00071 Ras: Ras family; Int 93.3 0.55 1.2E-05 39.6 8.6 93 279-375 46-141 (162)
470 PRK08084 DNA replication initi 93.3 0.13 2.8E-06 47.3 4.9 37 175-212 47-83 (235)
471 cd00157 Rho Rho (Ras homology) 93.3 0.24 5.2E-06 42.2 6.3 69 279-348 46-118 (171)
472 COG0237 CoaE Dephospho-CoA kin 93.2 0.13 2.7E-06 46.1 4.5 34 172-212 1-34 (201)
473 PRK00698 tmk thymidylate kinas 93.2 0.19 4.1E-06 44.6 5.8 35 173-208 3-37 (205)
474 PRK06851 hypothetical protein; 93.2 0.34 7.3E-06 47.4 7.8 47 170-217 211-257 (367)
475 cd01870 RhoA_like RhoA-like su 93.2 1.1 2.5E-05 38.2 10.5 68 279-347 47-118 (175)
476 COG2229 Predicted GTPase [Gene 93.1 3.2 6.9E-05 36.3 12.7 67 279-347 66-134 (187)
477 PRK09518 bifunctional cytidyla 93.1 0.53 1.2E-05 50.5 9.9 68 279-347 496-574 (712)
478 cd02024 NRK1 Nicotinamide ribo 93.1 0.094 2E-06 46.4 3.5 33 176-213 2-34 (187)
479 PF03266 NTPase_1: NTPase; In 93.1 0.17 3.7E-06 44.0 5.1 32 176-208 2-33 (168)
480 PRK00081 coaE dephospho-CoA ki 93.1 0.12 2.7E-06 45.8 4.3 35 172-213 1-35 (194)
481 PRK05124 cysN sulfate adenylyl 93.1 0.12 2.6E-06 52.5 4.8 68 279-347 105-173 (474)
482 KOG3381 Uncharacterized conser 93.1 0.34 7.3E-06 40.5 6.4 59 73-131 32-97 (161)
483 PF13604 AAA_30: AAA domain; P 93.1 0.17 3.6E-06 45.1 5.1 34 175-209 20-53 (196)
484 PF13086 AAA_11: AAA domain; P 93.0 0.11 2.3E-06 46.7 4.0 34 176-209 19-60 (236)
485 cd00877 Ran Ran (Ras-related n 93.0 0.59 1.3E-05 40.0 8.4 68 279-347 47-117 (166)
486 PRK09165 replicative DNA helic 93.0 0.15 3.3E-06 52.2 5.4 40 175-214 218-272 (497)
487 PF00004 AAA: ATPase family as 93.0 0.17 3.6E-06 41.2 4.7 32 177-212 2-33 (132)
488 PHA02530 pseT polynucleotide k 93.0 0.11 2.3E-06 49.4 4.0 36 173-213 2-37 (300)
489 PF13671 AAA_33: AAA domain; P 93.0 0.092 2E-06 43.7 3.2 31 177-212 2-32 (143)
490 PRK13946 shikimate kinase; Pro 93.0 0.13 2.8E-06 45.3 4.2 33 174-212 11-43 (184)
491 TIGR02236 recomb_radA DNA repa 93.0 0.15 3.3E-06 48.7 5.1 38 174-212 96-139 (310)
492 COG2109 BtuR ATP:corrinoid ade 93.0 0.52 1.1E-05 41.4 7.7 34 176-210 31-64 (198)
493 TIGR03156 GTP_HflX GTP-binding 92.9 1.4 3.1E-05 42.9 11.8 67 280-347 236-314 (351)
494 cd02021 GntK Gluconate kinase 92.9 0.11 2.3E-06 43.9 3.5 32 178-214 3-34 (150)
495 PRK05636 replicative DNA helic 92.9 0.17 3.7E-06 51.8 5.5 40 175-214 266-306 (505)
496 COG1102 Cmk Cytidylate kinase 92.9 0.1 2.2E-06 44.7 3.1 23 175-198 2-24 (179)
497 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 92.8 2.2 4.7E-05 37.4 11.8 95 279-374 51-158 (182)
498 PF06414 Zeta_toxin: Zeta toxi 92.8 0.13 2.8E-06 45.9 4.0 42 174-217 15-56 (199)
499 PF13401 AAA_22: AAA domain; P 92.7 0.14 3E-06 41.8 3.8 40 175-214 5-49 (131)
500 PF13238 AAA_18: AAA domain; P 92.7 0.12 2.6E-06 41.8 3.4 20 179-198 3-22 (129)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=365.11 Aligned_cols=308 Identities=35% Similarity=0.561 Sum_probs=251.8
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEEE
Q 016622 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 153 (386)
Q Consensus 74 ~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l~ 153 (386)
+..+++|+++|++|+||+++.||+++|+|+++.+++ +.+.+.+.++.++||..+.+++++++++..++|++++++++.
T Consensus 11 ~~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (369)
T PRK11670 11 EALRAMVAGTLANFQHPTLKHNLTTLKALHHVALLD--DTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLS 88 (369)
T ss_pred cchHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 357799999999999999999999999999999988 789999999999999999999999999999999999988877
Q ss_pred eCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCC
Q 016622 154 AQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPE 233 (386)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~ 233 (386)
...... ....-...+.++.++|+|+|+|||+||||+|+|||.+||+.|+||++||+|+++++++.+||........ ..
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~ 166 (369)
T PRK11670 89 HNIATL-KRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PD 166 (369)
T ss_pred eehhhh-ccccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cC
Confidence 542210 0001123567788999999999999999999999999999999999999999999999999864321111 11
Q ss_pred CCceeeeccCCceEEecCCC--CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEE
Q 016622 234 KRTIIPTEYLGVKLVSFGFS--GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (386)
Q Consensus 234 ~~~i~~~~~~~l~vl~~~~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV 311 (386)
...+.+....++...+.+.. ......|++++....+.+++....|++||||||||||++++..+.+.++.++|.+++|
T Consensus 167 ~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV 246 (369)
T PRK11670 167 GTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVV 246 (369)
T ss_pred CceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEE
Confidence 22344433444443333221 2233557787777788888865556899999999999999987877778888999999
Q ss_pred eCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCC--CceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 312 TTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 312 ~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~--~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++|+..++.++.+.++++++.+++++|+|+||+++.+. ++..+.|+++..+++++.++.++++.||+++.++++
T Consensus 247 ~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea 322 (369)
T PRK11670 247 TTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLRED 322 (369)
T ss_pred ecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHH
Confidence 99999999999999999999999999999999887653 344456788889999999999999999999999876
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.3e-40 Score=295.53 Aligned_cols=255 Identities=40% Similarity=0.632 Sum_probs=211.8
Q ss_pred CCchHHHHHHHHHHhhcCCCcceeEEEEEeCCCCchh-cccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCC
Q 016622 125 CPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIF-AEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA 203 (386)
Q Consensus 125 cp~~~~i~~~i~e~l~~l~gv~~v~v~l~~~p~~~~~-~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~ 203 (386)
||..+.....-.+.....+.++.... .|..+.. ....+.++.+..++|+|.|+||||||||+|+|||.+||+.|+
T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~ 77 (300)
T KOG3022|consen 2 CPGVLSSEAGKAEECAGCPNVGYCSS----SPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGK 77 (300)
T ss_pred CCCcchhhhcchhhccCCcccccccc----CCcCcCCCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCC
Confidence 55555554444555555554443322 2221111 012245788889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCccCCCcccccccCCCCCceee-eccCCceEEecCCCC---CcccccCCchHHHHHHHHHHhcCCC
Q 016622 204 RVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWG 279 (386)
Q Consensus 204 rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~ 279 (386)
+|+++|+|..+|+++.++|.+.+.... ......| ....++.+++.++.. ++..+|+++....++++++....|+
T Consensus 78 ~vglLD~Dl~GPSiP~m~g~e~~~~~~--~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg 155 (300)
T KOG3022|consen 78 KVGLLDADLCGPSIPRMMGLEGEVVHQ--SDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWG 155 (300)
T ss_pred cEEEEeecccCCCchhhcCCCCceeee--cCCCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCC
Confidence 999999999999999999998875222 2333444 566799999999764 4568899999999999999999999
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCC-CeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCC--Cceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~-d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~--~~~~~~~ 356 (386)
+.||+|||||||++|.++++.+...- |++++|++|+..++.++++.++++++.+++++|+|.||+.+.+. ++..+.|
T Consensus 156 ~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF 235 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIF 235 (300)
T ss_pred CcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceec
Confidence 99999999999999999998877765 88999999999999999999999999999999999999999884 7777889
Q ss_pred CCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 357 GRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.+..+++++.+|+|++|.||.|+.+.++
T Consensus 236 ~~gGg~~l~~~~glp~Lg~iPld~~i~~~ 264 (300)
T KOG3022|consen 236 GSGGGERLAEELGLPLLGSLPLDPLIAES 264 (300)
T ss_pred cCccHHHHHHHcCCCeEeecCCCHHHHHh
Confidence 99999999999999999999999999886
No 3
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.98 E-value=2.2e-31 Score=247.89 Aligned_cols=205 Identities=42% Similarity=0.632 Sum_probs=170.4
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--cccCC---CCCceeeeccCCc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LEMNP---EKRTIIPTEYLGV 245 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--~~~~~---~~~~i~~~~~~~l 245 (386)
+..++|+|+|+|||+||||+|.|||.++|++|+||+++|+|.++|+++.+|+.++.. ..... ....+......++
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceE
Confidence 467899999999999999999999999999999999999999999999999986531 11111 1111222223456
Q ss_pred eEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 016622 246 KLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (386)
Q Consensus 246 ~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~ 325 (386)
++++.+. ....|++.+.+..+.+++..++|+.|||||||+||++++..+.+.+... |.+++|++|+.....++++.
T Consensus 135 si~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~-~g~viVt~p~~~~~~~v~ka 210 (265)
T COG0489 135 SILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIP-DGVVIVTTPGKTALEDVKKA 210 (265)
T ss_pred EEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhccC-CeEEEEeCCccchHHHHHHH
Confidence 6665554 6677899999999999999999988999999999999998888766554 79999999999999999999
Q ss_pred HHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 326 ~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++++++.+.+++|+|+||.++.+.... ++..+.+.+.++ ++++.+|.++.+++.
T Consensus 211 ~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~~ 264 (265)
T COG0489 211 IDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSAREA 264 (265)
T ss_pred HHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhhc
Confidence 999999999999999999988774221 456788899999 999999999988764
No 4
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.97 E-value=4.5e-29 Score=218.23 Aligned_cols=167 Identities=57% Similarity=0.993 Sum_probs=134.9
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
+|+|+|+|||+||||+|.|||.++|+.|+||++||+|+++++++.+.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997664320
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
+++.....++.+++...+++|||||||+||+.++.......+..+|.+++|++|+..++.++.+.++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01112234555555544478999999999998876654432356799999999999999999999999999999
Q ss_pred CeEEEEEcCCcCCC--CCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 335 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 335 ~i~gvVlN~~~~~~--~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
++.|+|+||+.... ..+....|.....+++++.++.++++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 99999999987632 23333344556889999999999999999986
No 5
>CHL00175 minD septum-site determining protein; Validated
Probab=99.96 E-value=3.2e-28 Score=230.01 Aligned_cols=207 Identities=25% Similarity=0.332 Sum_probs=155.3
Q ss_pred cccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--------cccCCCCCceee
Q 016622 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP 239 (386)
Q Consensus 168 ~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--------~~~~~~~~~i~~ 239 (386)
+.++++++|+|+|+|||+||||+|+|||.+|+++|+||++||+|++.++++.++|.+... .........+..
T Consensus 10 ~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 10 KSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred hcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 345678999999999999999999999999999999999999999988999888876321 011112222222
Q ss_pred -eccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 240 -TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 240 -~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
...++++++|.+...... .+. ...+.++++.+.+.+||||||||||+.+...... +..+|.+++|++|+..+
T Consensus 90 ~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~s 162 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEITA 162 (281)
T ss_pred cCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChHH
Confidence 245799999977543221 122 2245556655542389999999999987544333 55679999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++.++++.+++.+....++|+|++........ .....+++++.++.++++.||+|+.+.++
T Consensus 163 i~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a 225 (281)
T CHL00175 163 IRDADRVAGLLEANGIYNVKLLVNRVRPDMIQAN----DMMSVRDVQEMLGIPLLGAIPEDENVIIS 225 (281)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeccChhhhhhh----ccccHHHHHHHhCCCeEEEccCCHhHHHH
Confidence 9999999999998887788999999875432111 01235778899999999999999998775
No 6
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.96 E-value=3.4e-28 Score=225.71 Aligned_cols=196 Identities=26% Similarity=0.369 Sum_probs=147.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc---cccc----CCCCCceeeeccCCce
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLEM----NPEKRTIIPTEYLGVK 246 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~---~~~~----~~~~~~i~~~~~~~l~ 246 (386)
++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.++|.+.. +... ....+.+. ....|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIY-EGPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheE-eCCCCEE
Confidence 48999999999999999999999999999999999999998889988887542 1111 11112222 2346899
Q ss_pred EEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 016622 247 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 247 vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
++|.+.......... ...+.+++..+. +.|||||||+||+.+...... +..+|.+++|++++..++.++.+..
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775332221111 224555555554 789999999999998655443 5678999999999999999998888
Q ss_pred HHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++..+.++.|+|+|+++.... ....+.+.+.++.++++.||+++.+.++
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~--------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a 203 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKT--------ELGREEIETILEVPVLGVVPEDPEVRRA 203 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhh--------hhHHHHHHHhhCCcEEEEecCCHhHHHH
Confidence 88888888899999999875321 1234677777899999999999998765
No 7
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.3e-28 Score=214.18 Aligned_cols=203 Identities=23% Similarity=0.269 Sum_probs=154.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc--------cCCCCC-ceeeecc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--------MNPEKR-TIIPTEY 242 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~--------~~~~~~-~i~~~~~ 242 (386)
|+++|.||||||||||||+++||+.+||++|+||++||+|..-.++...+|.+.++.. .....+ .+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 5689999999999999999999999999999999999999988889999999877311 111222 2334456
Q ss_pred CCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHH
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~ 322 (386)
++++++|+....+... +..+.....++++. ...|||||+|+|.|...-.. .++..+|.+++|++|+..+++++
T Consensus 81 ~nL~lLPAsQtrdKda-lt~E~v~~vv~eL~----~~~fDyIi~DsPAGIE~G~~--~A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKDA-LTPEGVKKVVNELK----AMDFDYIIIDSPAGIEQGFK--NAVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCccc-CCHHHHHHHHHHHH----hcCCCEEEecCcchHHHHHH--hhhhccceEEEEcCCCccccccc
Confidence 8999999886544322 23343444555554 36899999999999864333 33667899999999999999999
Q ss_pred HHHHHHHHcCC----CC---eEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 323 AKGVRMFSKLK----VP---CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 323 ~~~~~~l~~~~----~~---i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.|.+..|+..+ .. ...+++||+++..-..-.. -..+++.+.+.+|++|.||.|+.+-.+
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeM----lsv~Dv~~iL~i~liGiiPed~~Vi~a 219 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEM----LSVEDVLEILSIPLIGVIPEDQDVLRA 219 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCc----ccHHHHHHHhCCceEEeecCchhhhee
Confidence 99999997654 22 2678999988765211111 368999999999999999999987553
No 8
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.95 E-value=4.5e-27 Score=217.35 Aligned_cols=201 Identities=29% Similarity=0.338 Sum_probs=151.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHH-HHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc-------cccCCCCCceeeeccC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-------LEMNPEKRTIIPTEYL 243 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~L-A~~La~~G~rVllID~D~~~~sl~~~lg~~~~~-------~~~~~~~~~i~~~~~~ 243 (386)
++++|+|+|+|||+||||+|+|| |..++.+|++|++||+|+..++++.++|..... .+.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 46899999999999999999999 555556788889999999999999999987642 2223334455555558
Q ss_pred CceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
|++++|.+........+........+.++. ..|||||+|||+|++...... +..+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887666555555554555555554 778999999999998665544 5556999999999999999999
Q ss_pred HHHHHHHcCCCCeEE--EEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 324 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 324 ~~~~~l~~~~~~i~g--vVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.+++++.+.+....+ +|+||+....+..... ....+..+ ..+.+..||+++.++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~----~~~~~~~~--~~~~~~~i~~~~~v~~a 211 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVA----ALLIQVVK--QVPVLQVIPFDPEVRRA 211 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhHHH----HHHHHHHH--hCCceeEeccChHHHHH
Confidence 999999999999888 9999997443321110 12233333 34578889999966654
No 9
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.95 E-value=7.7e-27 Score=217.83 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=149.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc----cc----cCCCCCceee-eccC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE----MNPEKRTIIP-TEYL 243 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~----~~----~~~~~~~i~~-~~~~ 243 (386)
+|+|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.++|.+... .+ .....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 3799999999999999999999999999999999999999988898888865321 00 0011111211 1346
Q ss_pred CceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++++|.+..... .... ...+.++++.+. +.|||||||+||+.+..... .+..+|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~--~l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRN--AVAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHH--HHHhCCeEEEEcCCCcHHHHHHH
Confidence 8999987753221 1111 223455555554 68999999999998754433 35678999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++++.+++.+....++|+|+++........ ....+++.+.++.++++.||++..+.++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Ip~~~~~~~a 210 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKGD----MLSVDDVLEILSIPLIGVIPEDEAIIVS 210 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhccccc----ccCHHHHHHHhCCceeEEccCCHHHHHH
Confidence 999999988776789999998754321110 1236788888999999999999988765
No 10
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.95 E-value=5.8e-27 Score=220.50 Aligned_cols=202 Identities=20% Similarity=0.174 Sum_probs=142.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--ccc--------cCCCCCceeeecc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE--------MNPEKRTIIPTEY 242 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~--------~~~~~~~i~~~~~ 242 (386)
||+|+|+ +||||||||+++|||.+||++|+||++||+|+++++...++|.... +.+ .....+.+.+ ..
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~-~~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQP-GF 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEe-CC
Confidence 3799999 9999999999999999999999999999999999988877664211 110 0111122333 35
Q ss_pred CCceEEecCCCCCcc-cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHH
Q 016622 243 LGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
+|++++|++...... ...++......+.+.++.+. ++||||||||+++.... ......+.++|.+++|++|+..++.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 799999976532211 11222222223555555444 78999999998765311 1111112367999999999999999
Q ss_pred HHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++.++++.++. .+.++.|+|+|+..... .+...+++.+.++.++++.||+++.+.++
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~--------~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A 217 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRNVDG--------ERELLEAFAKKLGSQLIHFVPRDNIVQRA 217 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCCCCc--------cHHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 98888877765 36778899999864211 12346888899999999999999998876
No 11
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.95 E-value=2e-26 Score=208.90 Aligned_cols=193 Identities=21% Similarity=0.184 Sum_probs=135.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cc---------ccCCCCCceeeecc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---------EMNPEKRTIIPTEY 242 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~---------~~~~~~~~i~~~~~ 242 (386)
++|+|+ +|||+||||+++|||.+||++|+||++||+|+++++...+++.... +. ......+ +.....
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELED-VIFEGF 78 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhH-eeEeCC
Confidence 479999 5999999999999999999999999999999998776665553321 11 1111122 333456
Q ss_pred CCceEEecCCCCCcccccCCch--HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhc--CCCeEEEEeCCCcch
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLA 318 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~--~~d~vviV~~~~~~s 318 (386)
+|++++|++............. ....++ .+..+. ++||||||||++....... ...+. .+|.+++|++|+..+
T Consensus 79 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~s 155 (212)
T cd02117 79 GGVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMA 155 (212)
T ss_pred CCcEEEeCCCCCCCcccCCcchhhHHHHHH-hccccc-cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHH
Confidence 8999999886543322111111 112233 344443 7899999999765421111 11233 679999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCC
Q 016622 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (386)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d 379 (386)
+.++.++++.++.. +.++.|+|+||++.+. .+...+++++.++.++++.||+|
T Consensus 156 l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~--------~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 156 LYAANNICKGIRKYAKSGGVRLGGLICNSRNTDR--------ETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCcc--------HHHHHHHHHHHcCCCEEEecCCC
Confidence 99998888877764 5668999999988541 12357899999999999999986
No 12
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.95 E-value=1.8e-26 Score=216.75 Aligned_cols=203 Identities=18% Similarity=0.222 Sum_probs=147.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc----c----ccCCCCCceeee-cc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTIIPT-EY 242 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~----~----~~~~~~~~i~~~-~~ 242 (386)
|+|+|+|+|+|||+||||+|+|||.+|+++|++|++||+|+++++++.++|.+... . ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 56899999999999999999999999999999999999999988898888865321 1 011111222222 35
Q ss_pred CCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHH
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~ 322 (386)
+|++++|.+.... ...+. ...+.++++.+++..|||||||+||+.+...... +..+|.+++|++|+..++..+
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7899999775432 11111 2234555555543479999999999998655443 667899999999999999999
Q ss_pred HHHHHHHHcC-------CCC-eEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 323 AKGVRMFSKL-------KVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 323 ~~~~~~l~~~-------~~~-i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.++++.+... +.+ ..++|+|+++....... .....+++.+.+|.++++.||+++.+.++
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a 220 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRA 220 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhhc----ccccHHHHHHHhCCcEEEEecCCHHHHHH
Confidence 9999987632 112 25899999875431110 01236788889999999999999988875
No 13
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.94 E-value=6.6e-26 Score=215.31 Aligned_cols=202 Identities=21% Similarity=0.174 Sum_probs=141.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cccc---------CCCCCceeeec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTIIPTE 241 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~---------~~~~~~i~~~~ 241 (386)
+++|+| +|||||||||+|+|||..||++|+||++||+|+++++...+++.... +.+. ....+.+ ...
T Consensus 6 ~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i-~~~ 83 (296)
T PRK13236 6 IRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVM-LTG 83 (296)
T ss_pred ceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhh-eeC
Confidence 489999 68999999999999999999999999999999999999888775432 1111 1112222 344
Q ss_pred cCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHH
Q 016622 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
..|++++|++...... ...+......++.+.....|++||||+|||++....... ....+.++|.+++|++|+..++.
T Consensus 84 ~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~ 162 (296)
T PRK13236 84 FRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMY 162 (296)
T ss_pred CCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHH
Confidence 5799999987433221 122222222455555444568999999999644321111 11113478999999999999998
Q ss_pred HHHHHHHHH----HcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l----~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++.+.++.+ +..+.++.|+|+||.+... .....+++.+.++.++++.||+++.+.++
T Consensus 163 g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~--------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA 223 (296)
T PRK13236 163 AANNIARGILKYAHTGGVRLGGLICNSRNVDR--------EIELIETLAKRLNTQMIHFVPRDNIVQHA 223 (296)
T ss_pred HHHHHHHHHHHHhhCCCceeEEEEecCCCCcc--------hHHHHHHHHHHhCccceeeCCCChHHHHH
Confidence 887554433 3446788999999842211 01246888899999999999999998876
No 14
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.94 E-value=3.4e-26 Score=211.87 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=138.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc----c----cCCCCCceeeeccCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----E----MNPEKRTIIPTEYLG 244 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~----~----~~~~~~~i~~~~~~~ 244 (386)
+++|+|+|+|||+||||+|+|||..||++|+||++||+|+++ +++.++|.+.... . .....+.+. ....|
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAY-RSSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHh-hcCCC
Confidence 469999999999999999999999999999999999999986 4666666543211 0 001111121 23468
Q ss_pred ceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
++++|.+.................++++++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++..+.+
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976433211111111123456677777754457999999999888655443 66789999999999999998884
Q ss_pred -HHHHHHcCCC-CeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCC-eEEecCCChhhhhc
Q 016622 325 -GVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTVSYM 385 (386)
Q Consensus 325 -~~~~l~~~~~-~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~p-vl~~IP~d~~i~~a 385 (386)
+.++++..+. ...++|+|+++.... ..+...+.+.+.++.+ +.+.||++..+.++
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~~~------~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a 214 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPARQ------LSRDVRAVLRQTLGSRLLPFVIHRDEAVSEA 214 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcchh------hHHHHHHHHHHHhcccccCCcccchhhHHHH
Confidence 4455553322 237899999875432 1123345677778887 45789999888765
No 15
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.94 E-value=7.8e-26 Score=213.07 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=138.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCccCCCccc--cccc-------CCCCCceeeec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLEM-------NPEKRTIIPTE 241 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~~sl~~~lg~~~~--~~~~-------~~~~~~i~~~~ 241 (386)
|+++|+|+ +||||||||+|+|||.+||+ .|+||++||+|+|+++...++|.... +.+. ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 56899999 89999999999999999997 69999999999999766555554422 1110 01112344555
Q ss_pred cCCceEEecCCCCCccccc-CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhh--cCCCeEEEEeCCCcch
Q 016622 242 YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLA 318 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~--~~~d~vviV~~~~~~s 318 (386)
.+|++++|++......... +.......+.+.++.+. ++||||||||++.+....+. ..+ .++|.+++|++|+..+
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al~-~~~~~~aad~viIp~~p~~~s 157 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGFA-MPIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeecccc-ccchhccCceEEEeccccHHH
Confidence 6899999987543211111 11111112444444444 78999999995433211111 000 1679999999999999
Q ss_pred HHHHHHHHHHH----HcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 319 FIDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l----~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++.++++.+ +..++++.|+|+|+..... .+...+++.+.++.++++.||+++.+.++
T Consensus 158 l~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~--------~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A 220 (275)
T PRK13233 158 IYAANNICKGLVKYAEQSGVRLGGIICNSRNVDG--------ELELLEEFTDAIGTQMIHFVPRDNIVQKA 220 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCc--------HHHHHHHHHHHcCCceeeecCcchHHHHH
Confidence 99999887666 3457889999999743111 11346888889999999999999998875
No 16
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.94 E-value=1.6e-25 Score=210.76 Aligned_cols=204 Identities=22% Similarity=0.185 Sum_probs=134.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c---ccc---CCCCCceeeeccCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEM---NPEKRTIIPTEYLG 244 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~---~~~---~~~~~~i~~~~~~~ 244 (386)
||+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|+.+...+++.... + ... ......+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 3799999 7999999999999999999999999999999999877666543211 1 000 01112233444679
Q ss_pred ceEEecCCCCCccccc-CCchHH-HHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHHH
Q 016622 245 VKLVSFGFSGQGRAIM-RGPMVS-GVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 245 l~vl~~~~~~~~~~~~-~~~~~~-~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
++++|++......... +..... ..++++...-..++||||||||++.+....+ ....+.++|.+++|++|+..++.+
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g 159 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYA 159 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHH
Confidence 9999876322211000 011111 2233321110026799999999765431111 111123679999999999999999
Q ss_pred HHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 322 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++++.+++ .++++.|+|+|+..... .+...+++.+.++.++++.||++..+.++
T Consensus 160 ~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~--------~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A 219 (274)
T PRK13235 160 ANNICKGILKYADAGGVRLGGLICNSRKVDN--------EREMIEELARKIGTQMIHFVPRDNFVQRA 219 (274)
T ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCCCCc--------hHHHHHHHHHHcCCceEEeCCCCHHHHHH
Confidence 9888876643 35667899999743111 12356788888998899999999998876
No 17
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-25 Score=208.92 Aligned_cols=196 Identities=18% Similarity=0.153 Sum_probs=134.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--ccc----------cCCCCCceee
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----------MNPEKRTIIP 239 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~----------~~~~~~~i~~ 239 (386)
|+++|+|. +||||||||+++|||.+||++|+||++||+|+|+.. ...++.... +.+ .....+.+ .
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~-t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~ 77 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS-TFTLTGKLVPTVIDILEEVDFHSEELRPEDFV-Y 77 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch-hhhhcCCCCCcHHHHHHhccccccCCCHHHhe-e
Confidence 56899998 799999999999999999999999999999998744 444432211 100 00111223 2
Q ss_pred eccCCceEEecCCCCCcccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc
Q 016622 240 TEYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (386)
Q Consensus 240 ~~~~~l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~ 317 (386)
...+|++++|++........ .........++++ .+ +++||||||||+++.....+ ...+..+|.+++|++|+..
T Consensus 78 ~~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~ 153 (270)
T PRK13185 78 EGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFD 153 (270)
T ss_pred eCCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchh
Confidence 34579999998764322111 1111111222221 12 26899999999876542221 1225567999999999999
Q ss_pred hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 318 AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 318 s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++..+.++++.+++ .++++.|+|+||++.. ...+++.+.++.++++.||++..+.++
T Consensus 154 sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~-----------~~~~~~~~~~g~~vl~~Ip~~~~i~~A 214 (270)
T PRK13185 154 SIFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT-----------DLIDKFNEAVGLKVLAHVPDLDAIRRS 214 (270)
T ss_pred hHHHHHHHHHHHHhhhhccCCCceEEEEeccChH-----------HHHHHHHHHcCCCEEEECCCCcccChH
Confidence 99999888887653 3567789999996521 245788888999999999999888765
No 18
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.93 E-value=3e-25 Score=199.98 Aligned_cols=172 Identities=21% Similarity=0.299 Sum_probs=127.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc---ccc----cCCCCCceeeeccCCc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGV 245 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~---~~~----~~~~~~~i~~~~~~~l 245 (386)
+|+|+|+|+|||+||||++.|||.+||+.|+||++||+|++++.++.+++.... +.. .....+.+.....+++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 689999999999999999999999999999999999999999988877765441 111 1111223333344799
Q ss_pred eEEecCCCCCc-ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 246 ~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
+++|.+..... ...+... .+.++++.++ .+|||||||+||......... ....+|.+++|+.++..+..++.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~~----~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~-~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSS----NFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI-IARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCccccchHHH-HHHhCCeEEEEEECCCCCHHHHHH
Confidence 99998764322 2223333 3455555554 799999999998432111111 122469999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
.++.+++.+.+++|+|+||++.....
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~~~ 196 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISVDK 196 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCcccccCC
Confidence 99999999999999999999876543
No 19
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.93 E-value=9.3e-25 Score=206.56 Aligned_cols=193 Identities=20% Similarity=0.139 Sum_probs=134.9
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcc-cccc----------cCCCCCceeeeccCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE----------MNPEKRTIIPTEYLG 244 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~-~~~~----------~~~~~~~i~~~~~~~ 244 (386)
|+|+ +||||||||+++|||.+||++|+||++||+|+|+.....+.|... .+.+ .....+.+ ....+|
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~ 80 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVI-YKGYGG 80 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheE-EeCCCC
Confidence 8888 599999999999999999999999999999999865544434321 1110 01112233 333679
Q ss_pred ceEEecCCCCCcccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHH
Q 016622 245 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 245 l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~ 322 (386)
++++|++........ .........++.+ ... ++||||||||+++.....+ ...+..+|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHHH
Confidence 999998865432211 1111111233332 222 4799999999877543222 122556899999999999999999
Q ss_pred HHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 323 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 323 ~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.++++.++.. +.++.|+|+||++.. ...+++.+.++.++++.||++..+.++
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~~-----------~~~~~~~~~~~~~vl~~Ip~~~~v~~A 212 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSKR-----------DLIDKYVEACPMPVLEVLPLIEDIRVS 212 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCch-----------hHHHHHHHHcCCceEEECCCChHHHHH
Confidence 9998877654 566889999997631 346778888999999999999998875
No 20
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.93 E-value=3.6e-25 Score=207.87 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=134.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cccc------C--CCCCceeeecc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------N--PEKRTIIPTEY 242 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~------~--~~~~~i~~~~~ 242 (386)
||+|+|. +||||||||+|+|||.+|+++|+||++||+|+|++....+.+.... +... . ...+. .....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDV-IFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhh-eeecC
Confidence 4789999 6999999999999999999999999999999998766555442211 0000 0 11222 23345
Q ss_pred CCceEEecCCCCCccccc-CCchH-HHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHh-hhhhcCCCeEEEEeCCCcchH
Q 016622 243 LGVKLVSFGFSGQGRAIM-RGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~-~~~~~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~vviV~~~~~~s~ 319 (386)
+|++++|++......... ..... ...++. ++.+. ++||||||||++......+. ...+..+|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 799999987543221111 11111 112232 23333 68999999997654211111 111225799999999999999
Q ss_pred HHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 320 ~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.++.++++.+.+. +.++.|+|.|+.... ..+...+++++.+|.++++.||++..+.++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~--------~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A 218 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRNTD--------REDELIDAFAKRLGTQMIHFVPRDNVVQRA 218 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCCCh--------hHHHHHHHHHHHcCCCeEeecCCcHHHHHH
Confidence 9888877666443 577888998874321 122356788889999999999999988775
No 21
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.93 E-value=1.3e-25 Score=221.43 Aligned_cols=204 Identities=24% Similarity=0.242 Sum_probs=144.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--------c-------ccCCCCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKRT 236 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--------~-------~~~~~~~~ 236 (386)
.+++|+|+|.|||+||||+|+|||..||++|+||++||+|+|+ +++.+||..... . ......+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~ 198 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDV 198 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHHh
Confidence 4689999999999999999999999999999999999999985 677777754321 0 01122234
Q ss_pred eeeeccCCceEEecCCCCCcccc----------cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCC
Q 016622 237 IIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT 306 (386)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d 306 (386)
+.+..++|++++|++........ .........+++.++.+. ++||||||||||+++.. +...+.++|
T Consensus 199 i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~--t~~al~aAd 275 (405)
T PRK13869 199 IRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFL--TLSGLCAAT 275 (405)
T ss_pred eeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHH--HHHHHHHcC
Confidence 55666789999997743221110 011112234666776665 78999999999999854 445577889
Q ss_pred eEEEEeCCCcchHHHHHHHHHHH-------HcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-E
Q 016622 307 AAVIVTTPQKLAFIDVAKGVRMF-------SKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-F 374 (386)
Q Consensus 307 ~vviV~~~~~~s~~~~~~~~~~l-------~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl-~ 374 (386)
.+++++.|+..++..+.++++++ ++. +..++|+|+|+++..... .+...+.+.+.+|-.++ .
T Consensus 276 ~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~------~~~~~~~l~~~~~~~vl~~ 349 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAP------QTKVAALLRNMFEDHVLTN 349 (405)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcH------HHHHHHHHHHHhhhhhccC
Confidence 99999999999988888887532 222 234679999998865421 12346677777875555 4
Q ss_pred ecCCChhhhhc
Q 016622 375 DLPIRPTVSYM 385 (386)
Q Consensus 375 ~IP~d~~i~~a 385 (386)
.||.+..+.++
T Consensus 350 ~I~~s~ai~~a 360 (405)
T PRK13869 350 PMVKSAAVSDA 360 (405)
T ss_pred cCcchHHHHhh
Confidence 78888877765
No 22
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.93 E-value=1.3e-24 Score=209.17 Aligned_cols=194 Identities=20% Similarity=0.259 Sum_probs=146.5
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc----ccC---CC-C----Ccee
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----EMN---PE-K----RTII 238 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~----~~~---~~-~----~~i~ 238 (386)
..+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+||.+.... ... .. . ....
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDAL 170 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhC
Confidence 4578999999999999999999999999999999999999999999888888754210 000 00 0 0112
Q ss_pred eeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
+. .+|+++++.+.... ... ....++++++.+. +.|||||||+|++.+..... .+..+|.+++|++++..+
T Consensus 171 ~~-~~~l~vl~~~~~~~--~~~----~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~--~L~~AD~vliV~~~~~~s 240 (322)
T TIGR03815 171 PR-RGGLSVLSWGRAVG--AAL----PPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAET--ALESADLVLVVVPADVRA 240 (322)
T ss_pred CC-cCCeEEEecCCCCc--CCC----CHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHH--HHHHCCEEEEEcCCcHHH
Confidence 22 46899998775431 111 2345566666655 79999999999998765443 366789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+..+.++++.+++.+.+ +++|+|+.... ....+++++.+|.++++.||+++.+.++
T Consensus 241 l~~a~r~l~~l~~~~~~-~~lVv~~~~~~----------~~~~~~i~~~lg~~v~~~Ip~d~~v~~a 296 (322)
T TIGR03815 241 VAAAARVCPELGRRNPD-LRLVVRGPAPA----------GLDPEEIAESLGLPLLGEVRDQRGLARA 296 (322)
T ss_pred HHHHHHHHHHHhhhCCC-eEEEEeCCCCC----------CCCHHHHHHHhCCCceeeCCCChhHHHH
Confidence 99999999999876543 56777864321 1246889999999999999999988765
No 23
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.93 E-value=1.9e-24 Score=202.79 Aligned_cols=193 Identities=21% Similarity=0.179 Sum_probs=133.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc--cccc----------ccCCCCCceeeecc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLL----------EMNPEKRTIIPTEY 242 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~--~~~~----------~~~~~~~~i~~~~~ 242 (386)
+|+|+ +||||||||+|+|||.+||++|+||++||+|+++. +...++.. ..+. ......+.+ ...+
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD-STFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGY 78 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC-cceeccCCCCCCHHHHHHhccccccCCChhheE-EECC
Confidence 68898 69999999999999999999999999999999864 44444321 1111 011122233 3456
Q ss_pred CCceEEecCCCCCcccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHH
Q 016622 243 LGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
+|++++|++........ .........++++ . .. .+||||||||+++....... ..+..+|.+++|++|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~yD~vIIDt~g~~~~~~~~-~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-LF-EEYDVILFDVLGDVVCGGFA-APLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-cc-ccCCEEEEeCCCCcccccch-hhhhhcCEEEEEecCCcccHH
Confidence 79999998764322111 1011111233331 1 22 68999999998766432211 225567999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.+.++++.+++ .++++.|+|+||++.. ...+++.+.++.++++.||+++.+.++
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A 212 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRS 212 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHH
Confidence 98888877653 3677889999998632 235677888999999999999988765
No 24
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=9.4e-25 Score=192.62 Aligned_cols=178 Identities=27% Similarity=0.339 Sum_probs=124.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
.|+|+|+|||+||||+|+|||..| +||++||+|+++++++.+||.+......... .......+...+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 489999999999999999999999 7999999999999999999876532110000 000000111111111100
Q ss_pred CcccccCCchHHHHHHHHH-HhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 016622 255 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~ 333 (386)
+... ..+.+.+ ....++.||||||||||+.++..... +..+|.+++|++|+..++.++.+.++.+++.+
T Consensus 74 -------~~~~-~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GKLV-TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HHHH-HHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 1111 1222222 11223789999999999988654433 56689999999999999999999999999888
Q ss_pred CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecC
Q 016622 334 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (386)
Q Consensus 334 ~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP 377 (386)
.+ .++|+|+++..... ....+++.+.+|+|+++.||
T Consensus 144 ~~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 144 IP-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CC-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 77 47999998764321 12466778888999999998
No 25
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.93 E-value=1.3e-24 Score=203.93 Aligned_cols=193 Identities=20% Similarity=0.171 Sum_probs=133.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcc--cc---c------cc-CCCCCceeeecc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RL---L------EM-NPEKRTIIPTEY 242 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~--~~---~------~~-~~~~~~i~~~~~ 242 (386)
+|+|. +||||||||+|+|||.+||++|+||++||+|++++. ...++... .+ . .. ....+ +.....
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~-~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~i~~~~ 78 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS-TFTLTGRLIPTVIDVLQAVNYHYEDVRPED-VIYTGY 78 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc-cceecCCCCCcHHHHHHhccccccCCCHHH-eeEeCC
Confidence 68888 899999999999999999999999999999998744 44443211 11 1 00 11112 223445
Q ss_pred CCceEEecCCCCCccc--ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHH
Q 016622 243 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
+|++++|++....... ..........++++ .. +++||||||||+++....... ..+.++|.+++|+.++..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALF 154 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHH
Confidence 7999999876432211 11111111233331 12 268999999998765432211 225567999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.+.++++.+++ .++++.|+|+||++.. ...+++.+.++.++++.||++..+.++
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A 212 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRS 212 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHH
Confidence 99888877754 3577899999998753 235677888999999999999988775
No 26
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.92 E-value=7.7e-25 Score=207.92 Aligned_cols=200 Identities=18% Similarity=0.170 Sum_probs=135.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--ccc---------cCCCCCceeeec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE---------MNPEKRTIIPTE 241 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~---------~~~~~~~i~~~~ 241 (386)
+++|+|. +|||+||||+++|||..|+++|+|||+||+|+++++...+++.... +.+ .....+. ....
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ 81 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDV-MKIG 81 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHH-heec
Confidence 4899997 9999999999999999999999999999999999887655543221 110 0111222 2345
Q ss_pred cCCceEEecCCCCCcccccCCchHHHHHH-HHHHhcC-CCCCcEEEEcCCCCCChHHHh-hhhhcCCCeEEEEeCCCcch
Q 016622 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~-~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~vviV~~~~~~s 318 (386)
.+|++++|++...... ........++ ..++.+. .++||||||||+++.....+. .....++|.+++|++|+..+
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6799999986432221 0000011222 2333321 268999999996543211111 00012679999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++.++++.+++. ++++.|+|+|+.+... .+...+++.+.++.++++.||++..+.++
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~--------~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA 221 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDR--------ELELAEALAARLGSKLIHFVPRDNIVQHA 221 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCch--------HHHHHHHHHHHhCCceEEECCCchHHHHH
Confidence 99999998777653 4678899999654222 12346788888999999999999998875
No 27
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.92 E-value=2.4e-24 Score=203.41 Aligned_cols=202 Identities=18% Similarity=0.127 Sum_probs=131.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcc-c---ccc-----cCCCCCceeeeccC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-R---LLE-----MNPEKRTIIPTEYL 243 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~-~---~~~-----~~~~~~~i~~~~~~ 243 (386)
|++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++....+.+... . ... .....+.+. ..++
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~-~~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIY-EGFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHhee-eCCC
Confidence 5799999 799999999999999999999999999999999865554433211 1 000 011123333 3468
Q ss_pred CceEEecCCCCCcccccCCch-H-HHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHH
Q 016622 244 GVKLVSFGFSGQGRAIMRGPM-V-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~-~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
|++++|++............. . ...++. +..+.+.+||||||||+++.....+ ....+..+|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 999999875432211100000 0 111221 2122224799999999765421111 11123457999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++.++++.+++ .+.++.|++.|+-. ... .....+++++.++.++++.||++..+.++
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~-------~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA 218 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGRS-VID-------APDIVEEFAKKIGTNVIGKIPMSNIITEA 218 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEeccC-CCc-------hhHHHHHHHHHhCCcEEEECCCChHHHHH
Confidence 99888776643 35667788766321 110 12357888899999999999999988765
No 28
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.92 E-value=2e-24 Score=194.93 Aligned_cols=163 Identities=24% Similarity=0.270 Sum_probs=122.6
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCccCCCcccc--cc----cC-CCCCceeeecc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRL--LE----MN-PEKRTIIPTEY 242 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~~sl~~~lg~~~~~--~~----~~-~~~~~i~~~~~ 242 (386)
..+++|+|+|+|||+||||+++|||++||+ .|+||++||+|+++++++.+++.+... .+ .. ...+.+.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 356899999999999999999999999996 699999999999999998888765431 11 11 12233333345
Q ss_pred CCceEEecCCCCCcc-cccCCchHHHHHHHHHHhcCCCCC--cEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcch
Q 016622 243 LGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~y--D~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s 318 (386)
++++++|.+...... ...... .+.++++.++ .+| ||||||+||+.... ...+ ...+|.+++|++++..+
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~~----~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l--~~~aD~viiV~~~~~~~ 185 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLASQ----RMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL--ARLVGQIVLVVEEGRTT 185 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH--HHhCCEEEEEEECCCCC
Confidence 789999988654332 122223 4455555544 567 99999999988632 2222 33579999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEc
Q 016622 319 FIDVAKGVRMFSKLKVPCIAVVEN 342 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~~~i~gvVlN 342 (386)
...+.+.++.++ +.+++|+|+|
T Consensus 186 ~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeC
Confidence 999999999998 6789999998
No 29
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.92 E-value=1.8e-24 Score=203.72 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=125.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc-----cccCCCCCceee-eccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-----LEMNPEKRTIIP-TEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~-----~~~~~~~~~i~~-~~~~~l 245 (386)
..++|+|+|+|||+||||+|.|||.++|+.|+||++||+|++++.++.+++.+... .......+.+.. ...+|+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 45799999999999999999999999999999999999999999988888765331 111111222222 234799
Q ss_pred eEEecCCCCCcc-cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HHHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++|+|...... ..+..+ .+.++++.++ +.||||||||||.... ....+ ...+|.+++|++++..+..++.
T Consensus 182 ~~lp~g~~~~~~~~~~~~~----~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~--~~~~d~vilV~~~~~t~~~~~~ 254 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARP----AFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV--ATRARGTLIVSRVNETRLHELT 254 (274)
T ss_pred EEEeCcCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCcccccHHHHH--HHhCCeEEEEEECCCCCHHHHH
Confidence 999998754322 334433 3455555554 7999999999997642 12222 2346999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcC
Q 016622 324 KGVRMFSKLKVPCIAVVENM 343 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~ 343 (386)
+.++.+++.+.+++|+|+|+
T Consensus 255 ~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 255 SLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999996
No 30
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.92 E-value=7.2e-24 Score=202.04 Aligned_cols=196 Identities=24% Similarity=0.368 Sum_probs=138.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cccc---CC-CC-----Cceee
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---NP-EK-----RTIIP 239 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~---~~-~~-----~~i~~ 239 (386)
+..++|+|+ +|||+||||+++|||.+||++|+||++||+|+++++++.+||.... +.+. .. .. ..+..
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 456899999 6999999999999999999999999999999999999999886432 1111 00 00 11111
Q ss_pred eccCCceEEecCCCCCcccccCCchHHHHHH--HHHHh---cCCCCCcEEEEcCCCCCC--hHHHhhhhhcCCCeEEEEe
Q 016622 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVT 312 (386)
Q Consensus 240 ~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~VIIDtpp~~~--~~~~~~~~~~~~d~vviV~ 312 (386)
...|++++..+ ....|+++.....+. ++++. ..| +|||||||++++.. ...+... ...+|.+++|+
T Consensus 108 -~~~gv~~~~~g----~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVVt 180 (329)
T cd02033 108 -KRDGVFAMELG----GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVVG 180 (329)
T ss_pred -EeCCEEEecCC----CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEeC
Confidence 23477776543 233455554332222 34443 466 89999999976442 1112222 12357899999
Q ss_pred CCCcchHHH---HHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 313 TPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 313 ~~~~~s~~~---~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+++..++.+ +.+.++++++.+ .+++|+|+||++. ....+++++.+++++++.||+|+.++++
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a 247 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRK 247 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHH
Confidence 999999865 556668888774 6789999999753 2357899999999999999999999876
No 31
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.92 E-value=5.4e-24 Score=187.23 Aligned_cols=159 Identities=31% Similarity=0.490 Sum_probs=125.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
+|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999988887665533210 00 0
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
+.+++ . + ||||||+||+.+..... .+..+|.+++|+.|+..++..+.++++.+++.+.
T Consensus 57 --------------~~~~~---~-~--d~viiD~p~~~~~~~~~--~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL---A-G--DYILIDSPAGIERGFIT--AIAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc---c-C--CEEEEECCCCCcHHHHH--HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00011 0 1 99999999988765443 3567899999999999999999999999998888
Q ss_pred CeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 335 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 335 ~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+..++|+|+++..... .....+++.+.++.++++.||+++.+.++
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a 159 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRA 159 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHH
Confidence 8999999998765421 11225678888999999999999988765
No 32
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.92 E-value=6.4e-24 Score=200.06 Aligned_cols=200 Identities=22% Similarity=0.227 Sum_probs=132.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------cccc----CCCCCceeeeccC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM----NPEKRTIIPTEYL 243 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~----~~~~~~i~~~~~~ 243 (386)
++|+|+ +||||||||+|.|||.+||++|+||++||+|+|++....+++.... +... ....+ +......
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELED-VIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHH-eeeeCCC
Confidence 479998 6999999999999999999999999999999999776655443222 1000 11122 3344567
Q ss_pred CceEEecCCCCCcccc-cCCchH-HHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHH
Q 016622 244 GVKLVSFGFSGQGRAI-MRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~-~~~~~~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
|++++|++........ ...... ...++. +..+. ++||||||||++......+ ......++|.+++|++|+..++.
T Consensus 79 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 79 GIRCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred CEEEEeCCCCCccCCCccchhhhHHHHHHH-hhhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 9999997643321110 011110 113333 23333 6899999999764421111 11112357999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++.++++.+++ .+.++.|+|.|+..... .+...+++.+.++.++++.||++..+.+|
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~--------~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A 217 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRNVDD--------EKELIDEFAKKLGTQLIHFVPRSNIVQKA 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCCCch--------HHHHHHHHHHHhCCceEEECCCChHHHHH
Confidence 98888765433 36678889988732111 11346788888999999999999998876
No 33
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.92 E-value=2.3e-24 Score=212.44 Aligned_cols=205 Identities=23% Similarity=0.252 Sum_probs=141.1
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc---------------ccCCCCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL---------------EMNPEKR 235 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~---------------~~~~~~~ 235 (386)
..+++|+|+|.|||+||||+|+|||.+|+++|+||++||+|+|+ +++.++|...... ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 35689999999999999999999999999999999999999975 6777777543210 0111223
Q ss_pred ceeeeccCCceEEecCCCCCcccc------cC----CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCC
Q 016622 236 TIIPTEYLGVKLVSFGFSGQGRAI------MR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 305 (386)
Q Consensus 236 ~i~~~~~~~l~vl~~~~~~~~~~~------~~----~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~ 305 (386)
.+.+...+|++++|++........ .. .......+.+.++.+. ..||||||||||+++... ...+.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~--~~al~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLT--LSALCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHH--HHHHHHc
Confidence 444556689999997643211100 00 1111234566666665 799999999999987543 4457788
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-------HHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-
Q 016622 306 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 373 (386)
Q Consensus 306 d~vviV~~~~~~s~~~~~~~~~~-------l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl- 373 (386)
|.+|+++.|+..++..+..+++. +++. +....++|+|+++..... .+...+.+.+.+|..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~------~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGP------QAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCcc------HHHHHHHHHHHhcccccc
Confidence 99999999988877766554433 3332 245689999998754321 12345667777887666
Q ss_pred EecCCChhhhhc
Q 016622 374 FDLPIRPTVSYM 385 (386)
Q Consensus 374 ~~IP~d~~i~~a 385 (386)
..||.+..+.++
T Consensus 332 ~~I~~~~~~~~a 343 (387)
T TIGR03453 332 NPMLKSTAISDA 343 (387)
T ss_pred ccccccHHHHhh
Confidence 478988887765
No 34
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.91 E-value=4.7e-24 Score=199.79 Aligned_cols=202 Identities=21% Similarity=0.181 Sum_probs=136.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc-c---ccc--CCCCCceeeeccCCce
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-L---LEM--NPEKRTIIPTEYLGVK 246 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~-~---~~~--~~~~~~i~~~~~~~l~ 246 (386)
||+|+|. +|||+||||+|+|||.+|++.| ||++||+|++++....+++.... + ... ....+.+....++|++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGIL 79 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeE
Confidence 5799999 7999999999999999999999 99999999998665544443211 1 000 0011223344567999
Q ss_pred EEecCCCCCcccc-cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHh-hhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 247 LVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 247 vl~~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
++|.+........ .........+.+.+..+. ++||||||||++......+. .....++|.+++|++|+..++.++.+
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~ 158 (264)
T PRK13231 80 CVESGGPEPGVGCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANN 158 (264)
T ss_pred EEEcCCCCCCCCCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHH
Confidence 9987743221110 011101111222333343 78999999997654211111 01113679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+++.++..+....|+|.|+.+... .....+++.+.++.++++.||+++.+.++
T Consensus 159 ~~~~i~~~~~~~~~vv~~~~~~~~--------~~~~~~~l~~~~~~~vl~~I~~~~~v~~a 211 (264)
T PRK13231 159 IARGIKKLKGKLGGIICNCRGIDN--------EVEIVSEFASRIGSRIIGVIPRSNLVQES 211 (264)
T ss_pred HHHHHHHcCCcceEEEEcCCCCcc--------HHHHHHHHHHHhCCCeEEeCCCCHHHHHH
Confidence 999998877777888888754221 12356788888999889999999988875
No 35
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.91 E-value=4.5e-24 Score=208.91 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=139.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCccCCCccccc------------c-cCCCCCce
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRLL------------E-MNPEKRTI 237 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~-D~~~~sl~~~lg~~~~~~------------~-~~~~~~~i 237 (386)
.+++|+|+|.||||||||+|+|||..||.+|+|||+||+ |+|+ +++.+||...... . .......+
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i 183 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI 183 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence 468999999999999999999999999999999999996 9987 5666676543210 0 01123345
Q ss_pred eeeccCCceEEecCCCCCccc--c---c-CC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeE
Q 016622 238 IPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAA 308 (386)
Q Consensus 238 ~~~~~~~l~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~v 308 (386)
.+..++|++++|++....... . . .+ ......+...++.+. .+||||||||||+++.. +...+.++|.+
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~l--t~nAL~AAd~v 260 (387)
T PHA02519 184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTG--TINVVCAADVI 260 (387)
T ss_pred ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHH--HHHHHHHhCEE
Confidence 556678999999874321110 0 0 00 112345666666665 78999999999999854 44557788999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHcC-------C-CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-EecCCC
Q 016622 309 VIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIR 379 (386)
Q Consensus 309 viV~~~~~~s~~~~~~~~~~l~~~-------~-~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl-~~IP~d 379 (386)
++++.++..++..+.++++++.+. + .+.+.+++||++...... .+...+.+.+.||-.++ ..||..
T Consensus 261 liPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~~-----~~~i~~~l~~~~g~~vl~~~I~~s 335 (387)
T PHA02519 261 VVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGNQ-----SRWMEEQIRNTWGSMVLRQVVRVT 335 (387)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCchH-----HHHHHHHHHHHhccccccccCcCc
Confidence 999999999888777766555321 1 224568999987542111 11234677888886655 467777
Q ss_pred hhhhhc
Q 016622 380 PTVSYM 385 (386)
Q Consensus 380 ~~i~~a 385 (386)
..+.+|
T Consensus 336 ~~i~~a 341 (387)
T PHA02519 336 DEVGKG 341 (387)
T ss_pred chHhhc
Confidence 666553
No 36
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.91 E-value=3.6e-24 Score=210.03 Aligned_cols=206 Identities=20% Similarity=0.228 Sum_probs=139.8
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCccCCCcccc------------c-ccCCCCCc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL------------L-EMNPEKRT 236 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~-D~~~~sl~~~lg~~~~~------------~-~~~~~~~~ 236 (386)
.++++|+|+|.||||||||+|+|||.+||++|+|||+||+ |+|+ +++.++|..... . ........
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 3568999999999999999999999999999999999996 9988 455566643211 0 00112234
Q ss_pred eeeeccCCceEEecCCCCCccc--c---c-CC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCe
Q 016622 237 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (386)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~ 307 (386)
+.+..++|++++|++....... . . .+ ......++..++.+. .+||||||||||+++... ...+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t--~nal~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGT--INVVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHH--HHHHHHcCE
Confidence 4556678999999764321110 0 0 00 112345666666665 789999999999998544 445778899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-EecCC
Q 016622 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 378 (386)
Q Consensus 308 vviV~~~~~~s~~~~~~~~~~l~~~-------~-~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl-~~IP~ 378 (386)
+++++.++..++..+.++++++... + .+.+.+++|+++...... .+...+.+.+.+|-.++ ..||.
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~~-----~~~~~~~l~~~~~~~vl~~~I~~ 334 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQ-----SPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCchH-----HHHHHHHHHHHhccccccccCcc
Confidence 9999999999988887776666432 1 123568999987543110 01134667777876555 36888
Q ss_pred Chhhhhc
Q 016622 379 RPTVSYM 385 (386)
Q Consensus 379 d~~i~~a 385 (386)
...+.++
T Consensus 335 s~~i~~a 341 (388)
T PRK13705 335 TDEVGKG 341 (388)
T ss_pred cchHhhh
Confidence 7777654
No 37
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.91 E-value=2.6e-23 Score=197.15 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=122.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcc--cccccC----------CCCCceeeec
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 241 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~--~~~~~~----------~~~~~i~~~~ 241 (386)
++|+|+ +|||+||||+|+|||.+||++|+||++||+|++.+++..++|... .+.+.. ...+.+....
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 489999 899999999999999999999999999999999988888766322 111100 0111122111
Q ss_pred cCCceEEecCCCCCcccccCC---ch--H-HHHHHHHHHhcCCCCCcEEEEcCCCCC--ChHHHhhhhhcCCCeEEEEeC
Q 016622 242 YLGVKLVSFGFSGQGRAIMRG---PM--V-SGVINQLLTTTEWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTT 313 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~---~~--~-~~~l~~ll~~~~~~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~vviV~~ 313 (386)
..+.................+ .. . ...++.+ ..+. .+||||||||++.. +... .......+|.+++|+.
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l-~~~~-~~yD~IliD~~~~~~~~g~~-~~~a~~~Ad~viVvt~ 156 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKL-GFHD-WDFDFVLMDFLGDVVCGGFA-TPLARSLAEEVIVIGS 156 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHh-hhhc-ccCCEEEEecCCCccccccc-cchhhhhCCeEEEEec
Confidence 111110000000000000000 10 0 1222221 1222 47999999996543 1111 1111335799999999
Q ss_pred CCcchHHHHHHHH---HHHHcCC--CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhh
Q 016622 314 PQKLAFIDVAKGV---RMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSY 384 (386)
Q Consensus 314 ~~~~s~~~~~~~~---~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~ 384 (386)
++..++.++.++. +++++.+ .+++|+|+||+.. ....+++++.+++|+++.||+|+.+++
T Consensus 157 ~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~i~vLg~IP~d~~i~~ 221 (296)
T TIGR02016 157 NDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVGIPVLAAIPADEELRR 221 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcCCCeEEECCCCHHHHH
Confidence 9999887665554 4666653 6789999999753 135688899999999999999999986
No 38
>PRK10037 cell division protein; Provisional
Probab=99.91 E-value=9e-24 Score=196.27 Aligned_cols=193 Identities=15% Similarity=0.179 Sum_probs=122.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--------ccccCCCCCceeeeccCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 244 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--------~~~~~~~~~~i~~~~~~~ 244 (386)
|++|+|.|.|||+||||+|+|||.+||++|+||++||+|+|+ ++...||.... +.......+.+.+. .+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 469999999999999999999999999999999999999986 55555554321 11111122222332 469
Q ss_pred ceEEecCCCCCcc-cccCC-chHHHHHHHHHHhcCC-CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 245 VKLVSFGFSGQGR-AIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 245 l~vl~~~~~~~~~-~~~~~-~~~~~~l~~ll~~~~~-~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
++++|.+...... ..... ......+...++.+.. .+||||||||||+.+.... ..+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~--~al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTR--QLLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHH--HHHHhCCEEEEEcCcCHHHH--
Confidence 9999976221110 00000 0011234555555531 5799999999999875433 44677899999999986642
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHh---CCCeEE-ecCCChhhhhc
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHLF-DLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~---g~pvl~-~IP~d~~i~~a 385 (386)
++..++.......+++|+++... ...+++.+.+ +.+++. .||.+..+.++
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~~----------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a 208 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIGS----------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAEC 208 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCccc----------HHHHHHHHHHHHhcccccCccccCchhHHHH
Confidence 33333322223567889876322 1233444433 556664 68999888876
No 39
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.91 E-value=4.9e-23 Score=185.82 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=137.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc---------cCCC----------
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE---------MNPE---------- 233 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~---------~~~~---------- 233 (386)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+..... .+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 35899999999999999999999999865 899999999999999999987643100 0000
Q ss_pred ---CCcee----------eeccCC--ceEE--e----------cC-----CCCCc-c-----cccCCchHHHHHHHHHHh
Q 016622 234 ---KRTII----------PTEYLG--VKLV--S----------FG-----FSGQG-R-----AIMRGPMVSGVINQLLTT 275 (386)
Q Consensus 234 ---~~~i~----------~~~~~~--l~vl--~----------~~-----~~~~~-~-----~~~~~~~~~~~l~~ll~~ 275 (386)
-..+. +..-+| .-.+ | .| ....+ . .....+.....+..+.+.
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 01110 000000 0000 0 00 00000 0 001112223455555555
Q ss_pred cCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecc
Q 016622 276 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 276 ~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.. +..|++|||+|||++-.... .+..+|.+++|+.|+..++.+++++++.++.++++ .++|+||.+..
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~--sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g-------- 227 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIA--SLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLG-------- 227 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHH--hhccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCC--------
Confidence 43 34699999999999865543 37788999999999999999999999999999999 56899997321
Q ss_pred cCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 356 FGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
....+++++..|+|+++.||||..+.++
T Consensus 228 --~s~ie~~~~e~gi~il~~IPyd~~i~~~ 255 (284)
T COG1149 228 --DSEIEEYCEEEGIPILGEIPYDKDIPEA 255 (284)
T ss_pred --chHHHHHHHHcCCCeeEECCcchhHHHH
Confidence 1258899999999999999999998765
No 40
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.91 E-value=3.5e-23 Score=182.98 Aligned_cols=193 Identities=21% Similarity=0.257 Sum_probs=145.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCCCCCCCCccCCCcccccc-------------c-CC-------
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVYGPSLPTMVSPENRLLE-------------M-NP------- 232 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G-~rVllID~D~~~~sl~~~lg~~~~~~~-------------~-~~------- 232 (386)
+|+|+ ||||+||||+|+.|+..|..+| ++|++||+|+ ..+++..+|.+..... . ..
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 68887 9999999999999888877665 9999999999 7799999988763100 0 00
Q ss_pred ----CCCcee---eeccCCceEEecCCCC---CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhh
Q 016622 233 ----EKRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 302 (386)
Q Consensus 233 ----~~~~i~---~~~~~~l~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~ 302 (386)
....+. ....++++++..|... .++.+.- ..+++++++.+...+||+||+||-.|+..... -..
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~----~allR~~l~~l~~~~~e~VivDtEAGiEHfgR--g~~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM----NALLRRLLRHLILNRYEVVIVDTEAGIEHFGR--GTI 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH----HHHHHHHHHHHhcccCcEEEEecccchhhhcc--ccc
Confidence 000010 1223568888888653 3444433 34566666666557799999999998864333 335
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTV 382 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i 382 (386)
-.+|.+++|++|+..++..++++.++.++.+++.+++|+||++... ..........+.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e----------~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEE----------ELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccchh----------HHHHhhhhccCCeEEEEccCCHHH
Confidence 5679999999999999999999999999999999999999988541 346677888899999999999998
Q ss_pred hhc
Q 016622 383 SYM 385 (386)
Q Consensus 383 ~~a 385 (386)
.++
T Consensus 224 ~~~ 226 (255)
T COG3640 224 VEA 226 (255)
T ss_pred Hhc
Confidence 764
No 41
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.90 E-value=2e-23 Score=195.03 Aligned_cols=203 Identities=25% Similarity=0.324 Sum_probs=136.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCccCCCccc----c---cccCCCC---Cceeee
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR----L---LEMNPEK---RTIIPT 240 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~sl~~~lg~~~~----~---~~~~~~~---~~i~~~ 240 (386)
++++|+|+|.|||+||||+|.|||.+|| ..|+||++||+|+|+ ++...+|.... . ....... .....
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 4689999999999999999999999999 667999999999995 66666666443 1 1110011 11112
Q ss_pred ccCCceEEecCCCCCc-ccc-cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 241 EYLGVKLVSFGFSGQG-RAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 241 ~~~~l~vl~~~~~~~~-~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
..++++++|....... ... .........++++++.+. ++||||||||||+.+. +....+.++|.+++++.++..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~--l~~nal~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhH--HHHHHHHHcCeeEEecCchHHH
Confidence 4578999987644321 110 101122344555554333 7999999999999864 4445577889999999999999
Q ss_pred HHHHHHHHHHHHcCC------CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCe-EEecCCChhhhhc
Q 016622 319 FIDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-LFDLPIRPTVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~------~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pv-l~~IP~d~~i~~a 385 (386)
+..+..+++.+.+.. ..+.+++.|+++..... .....+.+.+.++.++ ...||.+..++++
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a 223 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKL------ADEVLQELKQLLGDPVLKTKIPRRVAYREA 223 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcch------HHHHHHHHHHHhccccccccCcccccHHhH
Confidence 998888777665431 26788999998765421 1234556666665443 3467777666654
No 42
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.89 E-value=5.1e-23 Score=219.32 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=132.9
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc------cccCCCCCceeeeccCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMNPEKRTIIPTEYLG 244 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~------~~~~~~~~~i~~~~~~~ 244 (386)
...++|+|+|.|||+||||+|+|||..||+.|+||++||+|+++++++.+||..... .........+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 356899999999999999999999999999999999999999999998888765331 11112223344455689
Q ss_pred ceEEecCCCCC-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 245 VKLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 245 l~vl~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
++++|++.... ....+..+. +.++++.++ +.||||||||||..+....... ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~----~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPA----MFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccHH----HHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 99999885432 223334443 344444444 7999999999998863332221 2246999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCCCc
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDADGK 351 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~~~ 351 (386)
+.++.+++.+.++.|+|+|+++....+.
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~~~~ 725 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPNDEVK 725 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhhhcc
Confidence 9999999999999999999998765433
No 43
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.89 E-value=1.3e-22 Score=184.34 Aligned_cols=195 Identities=20% Similarity=0.220 Sum_probs=133.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--------cccCCCCCceeeeccCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIPTEYLG 244 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--------~~~~~~~~~i~~~~~~~ 244 (386)
|++|+|.|.|||+||||+|+|||..|++.|++|++||+|+++ .+...||..... .......+. .....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~-~~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQA-AYRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHH-hhccCCC
Confidence 579999999999999999999999999999999999999976 777778766431 111111112 2334579
Q ss_pred ceEEecCCCCCcccc----cCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH
Q 016622 245 VKLVSFGFSGQGRAI----MRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 245 l~vl~~~~~~~~~~~----~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~ 319 (386)
++++|.|........ +.. . ...+.+.+..+. ...||+||||+|++.+...... +..+|.+++|+.|+..+.
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~-~-~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~ 154 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQ-D-PQWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASH 154 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhc-C-HHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHH
Confidence 999999865432211 111 1 123333333443 4789999999999887554443 556799999999999887
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
..+.+. .+. . -..+|+|+++.... .+++...-+.+.++--+.+.|+.|+.+.||
T Consensus 155 ~~L~q~--~l~---~-~~~~liNq~~~~s~------l~~D~~~~~~~~l~~llp~~IHrDeAv~EA 208 (243)
T PF06564_consen 155 ARLHQR--ALP---A-GHRFLINQYDPASQ------LQRDLLQVWRQSLGRLLPGVIHRDEAVAEA 208 (243)
T ss_pred HHHHHh--ccc---C-CcEEEEeccCccch------HHHHHHHHHHHhhccccceeeecchHHHHH
Confidence 655431 111 1 24789999887652 223334445556665566789999999887
No 44
>PHA02518 ParA-like protein; Provisional
Probab=99.89 E-value=2e-22 Score=182.08 Aligned_cols=171 Identities=24% Similarity=0.294 Sum_probs=115.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
++|+|+|.|||+||||+|+|||.+|+++|+||++||+|+|++...+ ++... . +..+++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~~-------~----------~~~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEARE-------E----------GEPLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhcc-------c----------CCCCCchhh-
Confidence 4899999999999999999999999999999999999999855432 21110 0 001111110
Q ss_pred CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-
Q 016622 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 332 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~- 332 (386)
.+. .+.+.+..+. ..||||||||||+.+.... ..+..+|.+++|+.|+..++..+.++.+.++..
T Consensus 62 -------~~~----~~~~~l~~~~-~~~d~viiD~p~~~~~~~~--~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MGK----SIRADLPKVA-SGYDYVVVDGAPQDSELAR--AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------ccH----HHHHHHHHHh-ccCCEEEEeCCCCccHHHH--HHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 011 2233333333 7899999999998775544 336678999999999999999888888777543
Q ss_pred ----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecC-CChhhhh
Q 016622 333 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP-IRPTVSY 384 (386)
Q Consensus 333 ----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP-~d~~i~~ 384 (386)
+.+..++|.|++....... ....+..+.++.+++..++ .+..+.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~~~~~~~~ 177 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQLY-------REARKALAGYGLPILRNGTTQRVAYAD 177 (211)
T ss_pred hhCCCCceEEEEEeccCCcchHH-------HHHHHHHHHcCchhhhchhhhHHHHHH
Confidence 4667889999875432110 1234444556777776544 4455544
No 45
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.88 E-value=4.8e-22 Score=210.01 Aligned_cols=170 Identities=17% Similarity=0.167 Sum_probs=130.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------ccccCCCCCceeeeccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~~~~~~~i~~~~~~~l 245 (386)
..|+|+|+|.++|+||||+|.|||.+||..|+||++||+|+++|.++.+|+.... +.......+.+.....+|+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 4579999999999999999999999999999999999999999998888776533 1111122334445556799
Q ss_pred eEEecCCCCC-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 246 KLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 246 ~vl~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++|.|.... ....+... .+.++++.++ .+||||||||||..... ...++ ..+|.+++|+.++.+...++.
T Consensus 610 ~vl~~g~~~~~p~ell~~~----~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la--~~ad~~llVvr~~~t~~~~~~ 682 (726)
T PRK09841 610 DVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVG--RSVGTSLLVARFGLNTAKEVS 682 (726)
T ss_pred EEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCccccchHHHHH--HhCCeEEEEEeCCCCCHHHHH
Confidence 9999886433 22333333 4555555555 79999999999977531 12222 245999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
+.++.+++.+.++.|+|+|+++...
T Consensus 683 ~~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 683 LSMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHHhCCCceEEEEEeCcccCc
Confidence 9999999999999999999997544
No 46
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.88 E-value=3e-23 Score=184.91 Aligned_cols=190 Identities=25% Similarity=0.323 Sum_probs=123.4
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (386)
|+|+|+|||+||||+|++||.+|+++|+||+++|+|++++....+++........ ....... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~ 69 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREG---LENANAI--------LKNFESQ 69 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTS---SHGHHCH--------HESCCHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhcccc---ceehhhh--------hhccchh
Confidence 7899999999999999999999999999999999999998877766541100000 0000000 0000000
Q ss_pred cccc-cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-
Q 016622 256 GRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK- 333 (386)
Q Consensus 256 ~~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~- 333 (386)
.... -.+ .....++++++.+....||||||||||+.+..... .+..+|.+++|+.++..++..+.++++.+++.+
T Consensus 70 ~~~~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~--~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~ 146 (195)
T PF01656_consen 70 DIYQGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRN--ALAAADYVIVPIEPDPSSIEGAERLIELLKRLGK 146 (195)
T ss_dssp HHHHHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHH--HHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhhhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHH--HHHhCceeeeecCCcHHHHHHHHHHHHHHHHhcc
Confidence 0000 001 23345666665543245999999999999866443 366789999999999999999999999999887
Q ss_pred -CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCC-eE-EecCCChhhhh
Q 016622 334 -VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HL-FDLPIRPTVSY 384 (386)
Q Consensus 334 -~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~p-vl-~~IP~d~~i~~ 384 (386)
.++.++|+||++........ ...+.....++.+ ++ +.||++.++.+
T Consensus 147 ~~~~~~vv~N~v~~~~~~~~~-----~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 147 KLKIIGVVINRVDPGNESKLQ-----EEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp TEEEEEEEEEEETSCCHHHHH-----HHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred ccceEEEEEeeeCCCccchHH-----HHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 55899999999754311100 1123333444433 33 78999998865
No 47
>PRK11519 tyrosine kinase; Provisional
Probab=99.88 E-value=6.4e-22 Score=208.90 Aligned_cols=169 Identities=19% Similarity=0.255 Sum_probs=132.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------ccccCCCCCceeeeccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~~~~~~~i~~~~~~~l 245 (386)
..++|+|+|.+||+||||++.|||..||..|+||++||+|+++|+++.++|.... +.......+.+.....+|+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4579999999999999999999999999999999999999999999988876543 1111222344555566899
Q ss_pred eEEecCCCCCcc-cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHHhhhhhcCCCeEEEEeCCCcchHHHH
Q 016622 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~~~~~~~~~d~vviV~~~~~~s~~~~ 322 (386)
+++|.|...... ..+. ...+.++++.++ .+||||||||||... |.. .+ ...+|.+++|+.++.+....+
T Consensus 605 ~~lp~g~~~~~~~ell~----s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-~l--~~~~d~~l~Vvr~~~t~~~~~ 676 (719)
T PRK11519 605 DLIPRGQVPPNPSELLM----SERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-IV--GRHVGTTLMVARYAVNTLKEV 676 (719)
T ss_pred EEEeCCCCCCCHHHHhh----HHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-HH--HHHCCeEEEEEeCCCCCHHHH
Confidence 999988643322 3333 345666666665 799999999999664 332 22 223599999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
...++.+++.+.+++|+|+|+++...
T Consensus 677 ~~~~~~l~~~~~~~~G~VlN~v~~~~ 702 (719)
T PRK11519 677 ETSLSRFEQNGIPVKGVILNSIFRRA 702 (719)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCc
Confidence 99999999999999999999996544
No 48
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.86 E-value=2.8e-21 Score=176.75 Aligned_cols=178 Identities=20% Similarity=0.254 Sum_probs=113.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
|++|+|.|.|||+||||++.|||.+|+++|++|++||+|+|++... +++.... ... .+......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~-w~~~~~~--------~~~----~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTR-WKENALR--------SNT----WDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH-HHHhhcc--------ccC----CCccceec---
Confidence 4799999999999999999999999999999999999999885432 2221100 000 00000000
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc-
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK- 331 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~- 331 (386)
.. .....++..++...++.||||||||||+.+..... .+..+|.+++++.|+..++..+.+.++.+.+
T Consensus 65 --------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~--al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~ 133 (231)
T PRK13849 65 --------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNT--IIASSNLLLIPTMLTPLDIDEALSTYRYVIEL 133 (231)
T ss_pred --------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH--HHHHCCEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 00 01123444444443368999999999988855443 3667799999999999999888888766543
Q ss_pred -----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-ecCCChhhhhc
Q 016622 332 -----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-DLPIRPTVSYM 385 (386)
Q Consensus 332 -----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-~IP~d~~i~~a 385 (386)
.+++ ..+|+||++...... ......++.+ +++++- .|+....+.++
T Consensus 134 ~~~~~~~l~-~~iv~~~~~~~~~~~-----~~~~~~~~~~--~~~vl~t~I~~r~~~~~a 185 (231)
T PRK13849 134 LLSENLAIP-TAILRQRVPVGRLTT-----SQRAMSDMLE--SLPVVDSPMHERDAFAAM 185 (231)
T ss_pred HHHhCCCCC-eEEEEEecccccCCH-----HHHHHHHHHh--cCCCCCccccchHHHHHH
Confidence 2444 459999986432110 0011233333 455553 46766665543
No 49
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.85 E-value=9.8e-21 Score=160.06 Aligned_cols=135 Identities=33% Similarity=0.489 Sum_probs=106.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
+|+|+|+|||+||||++.++|..++.+|++|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999775541
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-C
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 333 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~-~ 333 (386)
|||||||+||+.++....+ +..+|.+++|+.++..+++++.+.++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999988665544 5567999999999999999999999888553 4
Q ss_pred CCeEEEEEcCCcCCCCCceecccCCChHHHHHHH---hCCCeEEecC
Q 016622 334 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ---FGIPHLFDLP 377 (386)
Q Consensus 334 ~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~---~g~pvl~~IP 377 (386)
...+++|+||+.........+ ..+++++++ .++|++|.||
T Consensus 97 ~~~~~lVvN~~~~~~~~~~~~----~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 97 VLNFRVVVNRAESPKEGKKVF----KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred CCCEEEEEeCCCCHHHHHHHH----HHHHHHHHHHhCCChhhceecC
Confidence 556889999987544322111 123444333 3678888887
No 50
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.84 E-value=3.6e-21 Score=178.92 Aligned_cols=204 Identities=18% Similarity=0.180 Sum_probs=123.6
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--ccccCCCCC----------ceeeeccC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNPEKR----------TIIPTEYL 243 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~~~~~~----------~i~~~~~~ 243 (386)
|.|+++|||+||||+|+++|..+|++|+||++||+|++ ++++..|+.+-. ........+ .+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 45566999999999999999999999999999999997 588888876521 000000000 00000000
Q ss_pred CceEEecCCCCC-----cccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhh--------hhc--CC
Q 016622 244 GVKLVSFGFSGQ-----GRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLC--------QVV--PL 305 (386)
Q Consensus 244 ~l~vl~~~~~~~-----~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~--------~~~--~~ 305 (386)
.++.+..+.... .... ..+....-.+..+.+.+.+.+||+|||||||..... .+.+. .+. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~ 160 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPER 160 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 111111110000 0000 112222223444444444478999999999942211 11111 111 13
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCC-Ccee----cccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD-GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 306 d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~-~~~~----~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
+.+++|++|+..++.++++.++.+++.|+++.|+|+||+..... ...+ ....+..++++.+.|+-.-+..||+.+
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~ 240 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLP 240 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCC
Confidence 57999999999999999999999999999999999999887553 1111 112234677777777544455677553
No 51
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.82 E-value=1.8e-19 Score=145.00 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=90.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
+|+++|+|||+||||++.+||.++++. |++|+++|+|++.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999998743
Q ss_pred CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 016622 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~ 333 (386)
||||||+||+.+...... +..+|.+++|+.++..++..+.+.++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998654443 56779999999999999999999999998876
Q ss_pred CC---eEEEEEcC
Q 016622 334 VP---CIAVVENM 343 (386)
Q Consensus 334 ~~---i~gvVlN~ 343 (386)
.+ .+.+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 54 78899996
No 52
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.81 E-value=6.4e-20 Score=166.78 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=108.6
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC-------CCCccCCCcccccccCCCCCceeee-----c--
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRLLEMNPEKRTIIPT-----E-- 241 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~-------sl~~~lg~~~~~~~~~~~~~~i~~~-----~-- 241 (386)
|.++++|||+||||++++||..++++|+||++||+|++.+ ++..+++..............+... .
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 3577899999999999999999999999999999999983 4444444211100000000000000 0
Q ss_pred cCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcC--CCeEEEEeCCCcch
Q 016622 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVP--LTAAVIVTTPQKLA 318 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~--~d~vviV~~~~~~s 318 (386)
..+..+++.+. ...++...-.+.++++.+++.+||||||||||+...... ....+.. +|.+++|++|+..+
T Consensus 81 ~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH
Confidence 01222232221 112222222366666666634499999999997432221 2222222 47899999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..++.+.++.+++.+.++.|+|+|++....
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 999999999999999999999999987653
No 53
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.81 E-value=6.3e-20 Score=175.83 Aligned_cols=243 Identities=19% Similarity=0.204 Sum_probs=172.2
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCccee
Q 016622 72 STGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (386)
Q Consensus 72 ~~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v 148 (386)
...++|++|.+++++|+-..+.+|| |...|+++|+...- ..++ ..+....+++.+.+++.|..+.|.++.
T Consensus 19 ~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~--g~ev-----~~~l~p~q~~iKiV~eELv~llG~~~~ 91 (451)
T COG0541 19 KGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERAL--GEEV-----PKGLTPGQQFIKIVYEELVKLLGGENS 91 (451)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhc--cccC-----CCCCCHHHHHHHHHHHHHHHHhCCCCc
Confidence 3567999999999999999999998 77899999887552 1222 223344999999999999999887555
Q ss_pred EEEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc
Q 016622 149 NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (386)
Q Consensus 149 ~v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~ 228 (386)
++++...++ .+|.++ |-.|+||||++..||.+|.++|+||++|-||.++|..-..+
T Consensus 92 ~~~l~~~~P----------------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL------- 147 (451)
T COG0541 92 ELNLAKKPP----------------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL------- 147 (451)
T ss_pred ccccCCCCC----------------eEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH-------
Confidence 555543333 388888 99999999999999999999999999999999998752211
Q ss_pred ccCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh------HHHhhhhh
Q 016622 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQV 302 (386)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~~~~~~~ 302 (386)
-.....-++.+++.+...+ ..+..++.++.++...||+|||||++.+.. ....+...
T Consensus 148 --------~~La~q~~v~~f~~~~~~~---------Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~ 210 (451)
T COG0541 148 --------KQLAEQVGVPFFGSGTEKD---------PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV 210 (451)
T ss_pred --------HHHHHHcCCceecCCCCCC---------HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh
Confidence 0111112555554321111 122344444444447899999999987642 22233445
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
...|.+++|++.... +++....+.|.+ .+++.|+|+.+.+.+..+ +.+-.+...+|.|+-
T Consensus 211 ~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIlTKlDGdaRG--------GaALS~~~~tg~PIk 270 (451)
T COG0541 211 INPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVILTKLDGDARG--------GAALSARAITGKPIK 270 (451)
T ss_pred cCCCeEEEEEecccc--hHHHHHHHHHhh-hcCCceEEEEcccCCCcc--------hHHHhhHHHHCCCeE
Confidence 567999999876554 667777777765 467899999999987653 455677778887764
No 54
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.78 E-value=8.8e-19 Score=139.08 Aligned_cols=90 Identities=30% Similarity=0.598 Sum_probs=83.3
Q ss_pred CCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEE
Q 016622 71 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (386)
Q Consensus 71 ~~~~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v 150 (386)
.....++++|+++|++|+|||+++|||+|||||++.+++.++.++|.|++|++|||..+.+..++++++..++|++.++|
T Consensus 8 ~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V 87 (111)
T COG2151 8 EAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEV 87 (111)
T ss_pred chhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEE
Confidence 34567899999999999999999999999999999998722689999999999999999999999999999999999999
Q ss_pred EEEeCCCCch
Q 016622 151 TMSAQPARPI 160 (386)
Q Consensus 151 ~l~~~p~~~~ 160 (386)
+++++|+|..
T Consensus 88 ~l~~~p~Wt~ 97 (111)
T COG2151 88 ELTLSPPWTP 97 (111)
T ss_pred EEEEcCCCch
Confidence 9999999943
No 55
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.77 E-value=4.4e-18 Score=154.44 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=128.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cccc----C----CCCCceeeeccC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM----N----PEKRTIIPTEYL 243 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~----~----~~~~~i~~~~~~ 243 (386)
|.|+|+ +|||.||||++.||+.+||++|+||+.|-|||...+...+++.... +.+. . ...+.+....+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 579999 9999999999999999999999999999999999888777665432 1110 1 111234455677
Q ss_pred CceEEecCCCCCcccccCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCC--ChHHHhhhhhcCCCeEEEEeCCCcchHH
Q 016622 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
|+.++-.|.+..+.... +.-....++-+-+.-. ..+||||++|.-+-. +-.++-+. ---++.+++|+..+.+++.
T Consensus 80 gi~CvEsGGPePGvGCa-GRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir-~g~a~evyIVtSge~msly 157 (273)
T PF00142_consen 80 GILCVESGGPEPGVGCA-GRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR-EGYAQEVYIVTSGEFMSLY 157 (273)
T ss_dssp GEEEEE---SCTTSSBH-HHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH-TTS-SEEEEEEBSSHHHHH
T ss_pred CceeeccCCCccccccc-ccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh-hccCCEEEEEecCcHHHHH
Confidence 89998877654332221 1112222222221111 146999999985422 11122221 1135899999999999999
Q ss_pred HHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 321 ~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.+.++.+.+++. +.++.|+|.|.-.... .+...++++++.|.++++.||+++.++++
T Consensus 158 AANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~--------e~~~v~~fa~~~g~~i~~~iPr~~~v~~a 218 (273)
T PF00142_consen 158 AANNICKAIKNFADRGGARLGGIICNSRNVDD--------EEEIVEDFAERIGTPIIAFIPRSEIVQRA 218 (273)
T ss_dssp HHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTT--------HHHHHHHHHHHHTSEEEEEE---HHHHHH
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCCCCC--------chHHHHHHHHHcCCcEEEecCchHHHHHH
Confidence 998888777654 4578899999643221 12468899999999999999999998764
No 56
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.77 E-value=6.4e-18 Score=151.41 Aligned_cols=146 Identities=23% Similarity=0.347 Sum_probs=103.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeecc-CCceEEecC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEY-LGVKLVSFG 251 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~-~~l~vl~~~ 251 (386)
|++|+|+|.|||+||||.+..||..|+++|.+|.+||+|+++|...+.-... .+..+ .++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~-------------~~~~~~~~~~V~~~- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQ-------------RPGAWPDRIEVYEA- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcc-------------ccCCCCCCeeEEec-
Confidence 5699999999999999999999999999999999999999997653311000 00011 12222210
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~ 331 (386)
.....+++.++......|||||||+.++.+...... +..+|.+++++.++.....++.+.++++.+
T Consensus 67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHH
Confidence 012245555555443569999999997766443333 556899999999999999999988888765
Q ss_pred C------CCCeEEEEEcCCcCC
Q 016622 332 L------KVPCIAVVENMCHFD 347 (386)
Q Consensus 332 ~------~~~i~gvVlN~~~~~ 347 (386)
. +++ ..|+++|++..
T Consensus 133 ~~~~~~~~ip-~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 133 LEKAERRDIP-AAVLFTRVPAA 153 (231)
T ss_pred HHHhhCCCCC-eeEEEecCCcc
Confidence 4 344 46999998754
No 57
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.76 E-value=8.3e-18 Score=134.79 Aligned_cols=99 Identities=32% Similarity=0.507 Sum_probs=85.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
+|+|.|.|||+||||++.+||..++++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999987
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 331 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~---~l~~ 331 (386)
||+||||+||+.+..... .+..+|.+++|+.++..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~--~l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRN--ALAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHH--HHHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999998765543 356679999999999999999999887 3333
Q ss_pred --CCCCeEEEEEc
Q 016622 332 --LKVPCIAVVEN 342 (386)
Q Consensus 332 --~~~~i~gvVlN 342 (386)
......|+|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 24557888887
No 58
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.3e-17 Score=144.34 Aligned_cols=202 Identities=25% Similarity=0.250 Sum_probs=141.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--cc----c----cCCCCCceeeecc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL----E----MNPEKRTIIPTEY 242 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~----~----~~~~~~~i~~~~~ 242 (386)
++.|+|+ +|||.||||++.|++.+||+.|+||++|-|||...+...++|.... +. . .....+.+....+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 4689999 9999999999999999999999999999999999998888873322 11 0 1223345666778
Q ss_pred CCceEEecCCCCCcccccCCchHHHHHHHHHHhcCC-CCCcEEEEcCCCCC--ChHHHhhhhhcCCCeEEEEeCCCcchH
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEW-GELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~vviV~~~~~~s~ 319 (386)
.|++++-+|.+..+.... +.-....++-+-+.-.. +..|+||+|..+-. +-.++-+. ---+|.+++|++.+.+++
T Consensus 80 ~Gv~CVEsGGPepGvGCA-GRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiR-eg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGCA-GRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIR-EGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCcc-cchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehh-cccCcEEEEEecCchHHH
Confidence 899999877655443332 22222233322222111 34699999986522 11111111 113699999999999999
Q ss_pred HHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 320 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 320 ~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
..+.++.+-+++ .+++.-|+|.|.-..+. .....+.+++.+|.++++.||+++.+++|
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~--------e~e~v~~fa~~igt~li~~vPr~~ivq~a 219 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR--------ERELVEAFAERLGTQLIHFVPRDNIVQKA 219 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCccc--------HHHHHHHHHHHhCCceEeeccchHHHHHH
Confidence 988877665544 35778999999744322 12468899999999999999999988765
No 59
>PRK10867 signal recognition particle protein; Provisional
Probab=99.75 E-value=6.5e-18 Score=166.60 Aligned_cols=243 Identities=18% Similarity=0.197 Sum_probs=156.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..+++++|.+.|++++...+..|| +...++..|+.... ...+.-. ....+.+.+.+++.+..+.+.....
T Consensus 20 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~--~~~~~~~-----~~~~~~~~~~v~~el~~~l~~~~~~ 92 (433)
T PRK10867 20 GRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAV--GQEVLKS-----LTPGQQVIKIVNDELVEILGGENSE 92 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh--hcccccc-----CCcHHHHHHHHHHHHHHHhCCCcce
Confidence 456889999999999999999888 55677777754321 1111111 1226778888998888776543333
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCccCCCccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~~sl~~~lg~~~~~~ 228 (386)
+++. .+.+.+|+++ |.+|+||||++++||.+|+++ |++|++||+|.+++.....+.
T Consensus 93 ~~~~----------------~~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~------ 149 (433)
T PRK10867 93 LNLA----------------AKPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK------ 149 (433)
T ss_pred eeec----------------CCCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH------
Confidence 3221 1123577777 899999999999999999988 999999999999876422110
Q ss_pred ccCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----hhhhh
Q 016622 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQV 302 (386)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~----~~~~~ 302 (386)
......++.+++.+...+ ......+.++......||+|||||++... +... .+...
T Consensus 150 ---------~~a~~~gv~v~~~~~~~d---------p~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~ 211 (433)
T PRK10867 150 ---------TLGEQIGVPVFPSGDGQD---------PVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA 211 (433)
T ss_pred ---------HHHhhcCCeEEecCCCCC---------HHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh
Confidence 001122555555332111 12233333333333689999999998663 1111 12223
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...+.+++|+.+.. -+++.+..+.+.+ .+++.|+|+|+.+....+ +.+-.+...+++|+.+
T Consensus 212 v~p~evllVlda~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~f 272 (433)
T PRK10867 212 VNPDEILLVVDAMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKF 272 (433)
T ss_pred hCCCeEEEEEeccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEE
Confidence 34678889988643 3555555555554 467789999998865432 4577888999999765
No 60
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.73 E-value=6.9e-19 Score=158.10 Aligned_cols=131 Identities=34% Similarity=0.486 Sum_probs=77.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
++|+|.|+|||+||||+|.|||.+|+++|+||.++|+|.++++++.+++.......... .. .+. +....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~g-i~--Lp~--p~~~~L~---- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDG-IE--LPV--PSHFFLP---- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT-----------EEE-SS----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcC-cc--cCC--ccceeec----
Confidence 58999999999999999999999999999999999999999999988864322211110 00 010 0111111
Q ss_pred CCcccccCCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc
Q 016622 254 GQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (386)
Q Consensus 254 ~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~ 316 (386)
......+.++. ....+++++..+. .++|||||||| |.++..... ....+|.++.+.....
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr~-Ahs~ADtLiTPlNdSf 132 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSRV-AHSMADTLITPLNDSF 132 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHHH-HHHT-SEEEEEEESSH
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHHH-HHHhCCEEEccCchhH
Confidence 12222333332 3457888888776 79999999999 565544443 3456687776655443
No 61
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.72 E-value=9.3e-18 Score=144.46 Aligned_cols=141 Identities=27% Similarity=0.384 Sum_probs=98.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c----ccc---------CCCCCcee
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEM---------NPEKRTII 238 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~----~~~---------~~~~~~i~ 238 (386)
|+|+|+|.+||+||||+|.+||..||+.|++|++||+|...+.+..+++.+.. + ... ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999988888876654 1 111 01122233
Q ss_pred eeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
.....++++++..........+........++.+. +.||+||||+|+........ ..+..+|.+++|+.++..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-----~~yd~IivD~~~~~~~~~~~-~~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-----EHYDYIIVDLPSSLSNPDTQ-AVLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-----HHSSEEEEEEESTTTHTHHH-HHHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-----HcCCEEEEECcCCccHHHHH-HHHHHCCEEEEEECCCccc
Confidence 23347899998666555444455554445555544 69999999999988754332 1255679999999999887
Q ss_pred HH
Q 016622 319 FI 320 (386)
Q Consensus 319 ~~ 320 (386)
.+
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 62
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.71 E-value=2.4e-16 Score=149.52 Aligned_cols=198 Identities=24% Similarity=0.308 Sum_probs=150.7
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCccCCCcccc--cc----cCCC----CCcee
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRL--LE----MNPE----KRTII 238 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~sl~~~lg~~~~~--~~----~~~~----~~~i~ 238 (386)
....+.++|.+.|||+|-||+|.|+|+.++ +.++.|+|+|+|.+++....+|+.+... .+ .... .+...
T Consensus 101 ~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~ 180 (366)
T COG4963 101 AQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLL 180 (366)
T ss_pred hhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHH
Confidence 345689999999999999999999999999 5689999999999998877777765431 11 0000 11222
Q ss_pred eeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
-...+++++++..........+. ...+.++++.++ ..||+||+|.|-...++...+ +..+|.+++|++++..+
T Consensus 181 ~~~~~~l~ll~a~~~~~~~~d~~----~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 181 TRLASGLKLLAAPTELAKNYDLK----TGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred hccCCCceeecCCcchhhhcccc----cchHHHHHHHhh-ccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHHH
Confidence 33456888887665433322222 335556665555 899999999997777777766 77789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 319 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
++.++++++.+++.+ .+....|+|++..... ...+++.+.+|++.+..+|+|+.+.
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~---------~~~~dl~~~~~i~~~~~~p~d~~~~ 311 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKR---------PEPSDLEEILGIESLLVLPFDPALF 311 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCC---------CCHHHHHHHhCCchhccccCCchhh
Confidence 999999999999874 3467789999876543 2378999999999999999998763
No 63
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.71 E-value=4.5e-17 Score=160.62 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=150.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|++|.+.|++++...+..|| +...+++.++.... ...+. .+....+.+.+.+++.|..+.+.....
T Consensus 19 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~--~~~~~-----~~~~~~~~~~~~v~~eL~~~l~~~~~~ 91 (428)
T TIGR00959 19 GTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKAL--GQEVL-----KSLSPGQQFIKIVHEELVAILGGENAS 91 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhc--ccccc-----ccCCcHHHHHHHHHHHHHHHhCCCCcc
Confidence 457999999999999999999888 55667777643221 01111 122226788899999988766543211
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCccCCCccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLL 228 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~sl~~~lg~~~~~~ 228 (386)
+.+. .+.+.+|++ +|.+|+||||++++||.+|+ +.|++|++||+|.+++.....+..
T Consensus 92 ~~~~----------------~~~p~vi~~-vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~----- 149 (428)
T TIGR00959 92 LNLA----------------KKPPTVILM-VGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKV----- 149 (428)
T ss_pred cccC----------------CCCCEEEEE-ECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHH-----
Confidence 1110 112334555 59999999999999999987 689999999999988764221100
Q ss_pred ccCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----hhhhh
Q 016622 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQV 302 (386)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~----~~~~~ 302 (386)
.....++.++..+.... ......+.++.+....||+|||||++... +..+ .+...
T Consensus 150 ----------~a~~~gvp~~~~~~~~~---------P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~ 210 (428)
T TIGR00959 150 ----------LGQQVGVPVFALGKGQS---------PVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI 210 (428)
T ss_pred ----------HHHhcCCceEecCCCCC---------HHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh
Confidence 00112334443221111 11222333333222789999999998653 2111 11223
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...|.+++|+.+.. -+++.+..+.+.+ .+++.|+|+|+.+....+ +....+...+++|+.+
T Consensus 211 ~~p~e~lLVvda~t--gq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~f 271 (428)
T TIGR00959 211 LNPDEILLVVDAMT--GQDAVNTAKTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKF 271 (428)
T ss_pred hCCceEEEEEeccc--hHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEE
Confidence 34688899988753 3555555555542 346789999998865432 4578888999999875
No 64
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.70 E-value=3.3e-17 Score=155.84 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=118.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceee-eccCCceEEecCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGF 252 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~~ 252 (386)
|+|.| +|||||||||+|+.+|.++|++|+||+++..|+.. +++..||.+-. ..... ...+||+.+-...
T Consensus 2 r~~~~-~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~--------~~~~~v~~~~~L~a~eid~ 71 (305)
T PF02374_consen 2 RILFF-GGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG--------GEPTKVEGVPNLSAMEIDP 71 (305)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B--------SS-EEETTCSSEEEEE--H
T ss_pred eEEEE-ecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC--------CCCeEecCCCCceeeecCH
Confidence 45555 49999999999999999999999999999999955 66666665311 00000 0112343332110
Q ss_pred C------------------C---------CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH---------
Q 016622 253 S------------------G---------QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------- 296 (386)
Q Consensus 253 ~------------------~---------~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--------- 296 (386)
. . .....+.+-.....+..+.+.+..++||+||+||||.-....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~ 151 (305)
T PF02374_consen 72 EAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLR 151 (305)
T ss_dssp HHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHH
Confidence 0 0 000111222233345555554445899999999999532100
Q ss_pred ----------H-------hh----------------------------hhhcC--CCeEEEEeCCCcchHHHHHHHHHHH
Q 016622 297 ----------L-------TL----------------------------CQVVP--LTAAVIVTTPQKLAFIDVAKGVRMF 329 (386)
Q Consensus 297 ----------~-------~~----------------------------~~~~~--~d~vviV~~~~~~s~~~~~~~~~~l 329 (386)
. .+ ..+.. ...+++|++|+..++.++++++..|
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L 231 (305)
T PF02374_consen 152 WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTEL 231 (305)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence 0 00 00101 2468999999999999999999999
Q ss_pred HcCCCCeEEEEEcCCcCCCCCc-ee----cccCCChHHHHHHHhCCCeEEecCCC
Q 016622 330 SKLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (386)
Q Consensus 330 ~~~~~~i~gvVlN~~~~~~~~~-~~----~~~~~~~~~~i~~~~g~pvl~~IP~d 379 (386)
+..|+++-++|+||+-...... .+ +..+...++++.+.|.---+..+|+-
T Consensus 232 ~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~ 286 (305)
T PF02374_consen 232 KLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLL 286 (305)
T ss_dssp HHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--
T ss_pred HhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999999999987655432 11 11123467788888853344556643
No 65
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.70 E-value=5.9e-17 Score=158.87 Aligned_cols=243 Identities=12% Similarity=0.103 Sum_probs=151.9
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|++|.+.|++|+...+..|| +...|+..+..... + ..+ ..+....+.+.+.+.+.|..+.+.....
T Consensus 20 ~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~-~-~~~-----~~~~~~~~~v~~~v~~~L~~~l~~~~~~ 92 (429)
T TIGR01425 20 TVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAIN-L-EEM-----ASGLNKRKMIQHAVFKELCNLVDPGVEA 92 (429)
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-c-ccc-----ccccCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 567999999999999999999888 55778877654321 1 111 1222336789999999998865432211
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
+... .+.+++|+++ |.+|+||||++++||.+++++|++|++|++|+++++....+..
T Consensus 93 ~~~~----------------~~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~------ 149 (429)
T TIGR01425 93 FTPK----------------KGKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQ------ 149 (429)
T ss_pred cccc----------------CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHH------
Confidence 1110 1234588888 8999999999999999999999999999999999654221110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH------hhhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~ 303 (386)
.....++.+....... .......+.++.++...||+|||||++....... .+....
T Consensus 150 ---------~a~~~~vp~~~~~~~~---------dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~ 211 (429)
T TIGR01425 150 ---------NATKARIPFYGSYTES---------DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI 211 (429)
T ss_pred ---------HhhccCCeEEeecCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc
Confidence 0011133333211100 1112222223323226899999999986642111 112233
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..+.+++|+.+... +++....+.|.+ .+++.|+|+|+.+....+ +.+-.+...+|.|+.+
T Consensus 212 ~p~e~lLVlda~~G--q~a~~~a~~F~~-~~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 212 QPDNIIFVMDGSIG--QAAEAQAKAFKD-SVDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIF 271 (429)
T ss_pred CCcEEEEEeccccC--hhHHHHHHHHHh-ccCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEE
Confidence 45788999886543 334444555544 246789999999976532 4566777788888764
No 66
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.65 E-value=5.1e-16 Score=153.57 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=153.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..+++++|.++|++|+...+..|| +...|++.+..... + ..+ ..+....+.+.+.+.+.+..+.+.....
T Consensus 16 ~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~-~-~~~-----~~~~~~~~~~~~~v~~~L~~~l~~~~~~ 88 (437)
T PRK00771 16 SRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERAL-E-EEP-----PKGLTPREHVIKIVYEELVKLLGEETEP 88 (437)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-c-ccc-----cccCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 467999999999999999999888 55667766653221 1 111 2334447788888888887765433211
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
.. ....+.+|+|+ |.+|+||||++++||..|.+.|++|++|++|.+++.....+..
T Consensus 89 ~~-----------------~~~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~------ 144 (437)
T PRK00771 89 LV-----------------LPLKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ------ 144 (437)
T ss_pred cc-----------------cCCCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH------
Confidence 10 01234588887 8999999999999999999999999999999988643211100
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-H-----Hhhhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-Q-----LTLCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~-----~~~~~~~ 303 (386)
. ....++.+..... .......+.+.++.. ..+|+|||||++..... . ..+....
T Consensus 145 ---l------a~~~gvp~~~~~~---------~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~ 204 (437)
T PRK00771 145 ---L------AEKIGVPFYGDPD---------NKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAV 204 (437)
T ss_pred ---H------HHHcCCcEEecCC---------ccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHh
Confidence 0 0001222222110 111233445555544 35799999999866421 1 1233344
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..|.+++|+.+... .++....+.+.+ .+++.|+|+|+++....+ +.+-.+...++.|+.+
T Consensus 205 ~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~f 264 (437)
T PRK00771 205 KPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKF 264 (437)
T ss_pred cccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEE
Confidence 67899999887664 344444444443 356789999999876532 5677888888988764
No 67
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.63 E-value=4.7e-15 Score=140.85 Aligned_cols=194 Identities=23% Similarity=0.280 Sum_probs=126.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc--ccccccCCCCCceeeeccCCceEEe--
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLEMNPEKRTIIPTEYLGVKLVS-- 249 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~--~~~~~~~~~~~~i~~~~~~~l~vl~-- 249 (386)
+++.| +|||||||||+|+.+|..+|+.|+||++|..||.. +++..|+.+ ....... +|++.+.
T Consensus 3 riv~f-~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-----------~nL~a~eiD 69 (322)
T COG0003 3 RIVFF-TGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-----------PNLDALELD 69 (322)
T ss_pred EEEEE-ecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC-chHhhhccccCCchhhcC-----------CCCceeeec
Confidence 45555 59999999999999999999999999999999965 777666552 1110000 1222111
Q ss_pred ---------------------c----CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH---------
Q 016622 250 ---------------------F----GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------- 295 (386)
Q Consensus 250 ---------------------~----~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--------- 295 (386)
. +...+....+.+-.....+..+.+.....+||+||+||||.....
T Consensus 70 ~~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~ 149 (322)
T COG0003 70 PEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVL 149 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHH
Confidence 0 111112233444445556777777777789999999999942100
Q ss_pred --HHh--------hh-h-----------------------------------hcC--CCeEEEEeCCCcchHHHHHHHHH
Q 016622 296 --QLT--------LC-Q-----------------------------------VVP--LTAAVIVTTPQKLAFIDVAKGVR 327 (386)
Q Consensus 296 --~~~--------~~-~-----------------------------------~~~--~d~vviV~~~~~~s~~~~~~~~~ 327 (386)
.+. .. . +.. -..+.+|..|+..++.++.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~ 229 (322)
T COG0003 150 GWYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVE 229 (322)
T ss_pred HHHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHH
Confidence 000 00 0 001 24588899999999999999999
Q ss_pred HHHcCCCCeEEEEEcCCcCCCCCcee----cccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 328 MFSKLKVPCIAVVENMCHFDADGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 328 ~l~~~~~~i~gvVlN~~~~~~~~~~~----~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
.+.+.++++.++++|++.+......+ ....+....++.+.+.--.+..+|+.+
T Consensus 230 ~l~~~~i~v~~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~~ 286 (322)
T COG0003 230 RLSLYGIPVDAVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLLA 286 (322)
T ss_pred HHHHcCCchheeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEecccc
Confidence 99999999999999998876543211 111223466777777655566677654
No 68
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.60 E-value=1.9e-14 Score=134.76 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=105.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+++|+|+ |.+|+||||++++||..+++.|++|+++|+|+++..... .+ .......++.+++.+
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~------ql---------~~~~~~~~i~~~~~~ 134 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIE------QL---------EEWAKRLGVDVIKQK 134 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHH------HH---------HHHHHhCCeEEEeCC
Confidence 35799999 899999999999999999999999999999986643210 00 000111134444433
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh------hhhcC------CCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVVP------LTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~------~~~~~------~d~vviV~~~~~~s~ 319 (386)
...+.. ......+.... .+.||+|||||||........+ ..... .|.+++|+... ...
T Consensus 135 ~~~dp~-----~~~~~~l~~~~----~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~ 204 (272)
T TIGR00064 135 EGADPA-----AVAFDAIQKAK----ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQ 204 (272)
T ss_pred CCCCHH-----HHHHHHHHHHH----HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCH
Confidence 211110 11112222222 2789999999998764211111 11222 68899999886 455
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.++.+...+.+.. ++.|+|+|+++..... +..-.+...+++|+..
T Consensus 205 ~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~ 249 (272)
T TIGR00064 205 NALEQAKVFNEAV--GLTGIILTKLDGTAKG--------GIILSIAYELKLPIKF 249 (272)
T ss_pred HHHHHHHHHHhhC--CCCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEE
Confidence 6666665555444 4689999999865532 5667788888988875
No 69
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.53 E-value=6.5e-14 Score=121.18 Aligned_cols=89 Identities=25% Similarity=0.461 Sum_probs=81.8
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEec---CCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCccee
Q 016622 72 STGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINE---ALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (386)
Q Consensus 72 ~~~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~---~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v 148 (386)
..+.++++|+++|++|+||+++.|||++|+|+++.+++ +++++.|.|++|.++|++.+.+.+++++++.+++|++++
T Consensus 70 ~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V 149 (174)
T TIGR03406 70 DGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEV 149 (174)
T ss_pred cccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeE
Confidence 34567899999999999999999999999999999986 223799999999999999999999999999999999999
Q ss_pred EEEEEeCCCCch
Q 016622 149 NVTMSAQPARPI 160 (386)
Q Consensus 149 ~v~l~~~p~~~~ 160 (386)
+|++.++|+|..
T Consensus 150 ~V~l~~dp~W~~ 161 (174)
T TIGR03406 150 EVELVFDPPWSR 161 (174)
T ss_pred EEEEEecCCCCh
Confidence 999999999943
No 70
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.53 E-value=3.6e-13 Score=117.98 Aligned_cols=164 Identities=21% Similarity=0.236 Sum_probs=102.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
++.++ |.+|+||||++.++|..+++.|++|+++|+|.+++.....+... ....++.+++.....
T Consensus 2 ~~~~~-G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~---------------~~~~~~~~~~~~~~~ 65 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVL---------------GEQVGVPVFEEGEGK 65 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHh---------------cccCCeEEEecCCCC
Confidence 45555 99999999999999999999999999999999876553322110 011245555532211
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---HHHhh---hhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---IQLTL---CQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---~~~~~---~~~~~~d~vviV~~~~~~s~~~~~~~~~~ 328 (386)
.....+.+.+....+..||+||||+++.... ....+ ......|.+++|+.+.. .........++
T Consensus 66 ---------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~~~~~~~ 135 (173)
T cd03115 66 ---------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAVNQAKAF 135 (173)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHHHHHHHH
Confidence 1122232333322237899999999986531 11111 11223688999998853 33444444444
Q ss_pred HHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 329 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 329 l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.+..+ +.++|+||++..... +..-.+.+..|+|+.+
T Consensus 136 ~~~~~--~~~viltk~D~~~~~--------g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 136 NEALG--ITGVILTKLDGDARG--------GAALSIRAVTGKPIKF 171 (173)
T ss_pred HhhCC--CCEEEEECCcCCCCc--------chhhhhHHHHCcCeEe
Confidence 44545 689999999865432 2344588999998865
No 71
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.52 E-value=4.3e-13 Score=114.36 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=85.3
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC-CccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl-~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
|.+. |++|+||||++.+++..+.++|.||+++|+|++.+.. ..+++....+ .+.. ..+++.+.......
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRM------ERHA---SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEh------hhee---cCCCceEEEcCCcC
Confidence 4555 9999999999999999999999999999999865432 2222211110 0100 11344443322111
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
... .. .....+.++ .++...|||||||| +|....... .+..+|.+++|++|+......+.+. .+++...
T Consensus 72 ~~~-~~-~~~~~~~~~----~~~~~~~D~iiIDt-aG~~~~~~~--~~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~~- 140 (148)
T cd03114 72 FLG-GL-SRATPEVIR----VLDAAGFDVIIVET-VGVGQSEVD--IASMADTTVVVMAPGAGDDIQAIKA-GIMEIAD- 140 (148)
T ss_pred ccc-cc-chhHHHHHH----HHHhcCCCEEEEEC-CccChhhhh--HHHhCCEEEEEECCCchhHHHHhhh-hHhhhcC-
Confidence 100 00 111222332 22225899999999 566644443 3556799999999995544444443 4455443
Q ss_pred CeEEEEEcCCc
Q 016622 335 PCIAVVENMCH 345 (386)
Q Consensus 335 ~i~gvVlN~~~ 345 (386)
-+++||++
T Consensus 141 ---~~~~~k~~ 148 (148)
T cd03114 141 ---IVVVNKAD 148 (148)
T ss_pred ---EEEEeCCC
Confidence 37889864
No 72
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.50 E-value=9.4e-14 Score=103.54 Aligned_cols=72 Identities=43% Similarity=0.730 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEE
Q 016622 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (386)
Q Consensus 77 ~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v 150 (386)
|++|+++|++|+||+++.|++++|+|+++.+++ +++.|.+.++.++|+..+.+.+++++++.+++|+.+++|
T Consensus 1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~--~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEG--GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECT--CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 689999999999999999999999999999999 899999999999999999999999999999999988765
No 73
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.49 E-value=1.3e-12 Score=124.84 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=103.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
+++|+|+ |.+|+||||++.+||..++..|++|+++|+|+++...... ........++.+++...
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eq---------------l~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQ---------------LQVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHH---------------HHHHHHHcCceEEEeCC
Confidence 4699999 6999999999999999999999999999999977532100 00111122455554322
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HH-----Hhhhhh------cCCCeEEEEeCCCcchHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQ-----LTLCQV------VPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~-----~~~~~~------~~~d~vviV~~~~~~s~~ 320 (386)
..+. ....++.+..... +.||+|||||||.... .. ..+... ...+.+++|+.+.. ...
T Consensus 178 ~~dp--------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-g~~ 247 (318)
T PRK10416 178 GADP--------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-GQN 247 (318)
T ss_pred CCCH--------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-ChH
Confidence 1111 1112222222222 7899999999987641 11 111111 13577888888874 445
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 321 ~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
++.+...+.+. .++.|+|+|+.+....+ +..-.+...+++|+..
T Consensus 248 ~~~~a~~f~~~--~~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~ 291 (318)
T PRK10416 248 ALSQAKAFHEA--VGLTGIILTKLDGTAKG--------GVVFAIADELGIPIKF 291 (318)
T ss_pred HHHHHHHHHhh--CCCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEE
Confidence 55555444433 35679999999854421 4667778888999864
No 74
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.49 E-value=1.2e-13 Score=103.38 Aligned_cols=77 Identities=56% Similarity=0.971 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCC--CceecccCC
Q 016622 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGR 358 (386)
Q Consensus 282 D~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~--~~~~~~~~~ 358 (386)
||+|||+|||++|.++++.+....+++++|++|+..+..+++|.++++++.+++++|+|.||..+.+. ++..+.|++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGK 80 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999988773 566666765
No 75
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.46 E-value=4.4e-13 Score=122.29 Aligned_cols=193 Identities=14% Similarity=0.055 Sum_probs=112.7
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc-cccCCCCCceeeeccCCceEEecCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-LEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~-~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
|.|++.-.|+|||+++++|+..|+++|++|.++..=..+..-. ....+... ......... ......+ .+......
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~-~~~~d~~~~~~~~~~~~~--~~~~~~~-~~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEET-DRNGDALALQRLSGLPLD--YEDVNPY-RFEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCC-CCcHHHHHHHHHcCCCCC--hhhcCce-eeCCCCCH
Confidence 6789999999999999999999999999999976322111100 00000000 000000000 0000011 11111000
Q ss_pred CcccccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH------HhhhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q 016622 255 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 327 (386)
Q Consensus 255 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~------~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~ 327 (386)
.......+ ....+.+.+.++.+. ++||+||||++++..... ..++... -..+++|+.++..++.++...++
T Consensus 78 ~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l-~~pvilV~~~~~~~i~~~~~~i~ 155 (222)
T PRK00090 78 HLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQL-QLPVILVVGVKLGCINHTLLTLE 155 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHH
Confidence 00000010 111233444444444 789999999998753111 1111111 13588999999888988999999
Q ss_pred HHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCC
Q 016622 328 MFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (386)
Q Consensus 328 ~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d 379 (386)
.+++.+.++.|+|+|+++.... .+.+...+.+.+.+++|+++.||+-
T Consensus 156 ~l~~~~~~i~gvIlN~~~~~~~-----~~~~~~~~~l~~~~gi~vlg~ip~~ 202 (222)
T PRK00090 156 AIRARGLPLAGWVANGIPPEPG-----LRHAENLATLERLLPAPLLGELPYL 202 (222)
T ss_pred HHHHCCCCeEEEEEccCCCcch-----hHHHHHHHHHHHHcCCCeEEecCCC
Confidence 9988899999999999876411 1122457788889999999999984
No 76
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.38 E-value=1.1e-11 Score=119.38 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=109.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
+++|+|+ |.+|+||||+++.||..+..+|++|+++++|+++......+ .......++.++...
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQL---------------k~yae~lgipv~v~~- 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL---------------QDYVKTIGFEVIAVR- 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHH---------------HHHhhhcCCcEEecC-
Confidence 4688988 66999999999999999999999999999999873321100 001111244444311
Q ss_pred CCCcccccCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCCChHHH------hhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~~------~~~~~~~~d~vviV~~~~~~s~~~~~~~ 325 (386)
... .+.+.+..+. ..+||+|||||++....... .+......+.+++|+.+.. .-+++...
T Consensus 304 --------d~~----~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-k~~d~~~i 370 (436)
T PRK11889 304 --------DEA----AMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEI 370 (436)
T ss_pred --------CHH----HHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-ChHHHHHH
Confidence 111 2223333332 13699999999976532111 1111223467888876643 44666777
Q ss_pred HHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCChh
Q 016622 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIRPT 381 (386)
Q Consensus 326 ~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d~~ 381 (386)
++.|+. .++-|+|+.+.+.... .+.+-.+...+++|+.. .+|.|-.
T Consensus 371 ~~~F~~--~~idglI~TKLDET~k--------~G~iLni~~~~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 371 ITNFKD--IHIDGIVFTKFDETAS--------SGELLKIPAVSSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred HHHhcC--CCCCEEEEEcccCCCC--------ccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence 888876 5668999999886552 25677888899999874 5787744
No 77
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.38 E-value=3.2e-12 Score=111.15 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=90.9
Q ss_pred EEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c-cccCCCCCceeeeccCCceEEecCCCC
Q 016622 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L-LEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 178 v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~-~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
|++..+|+||||++.+||.+|+++|+||++++....+.. +.+.+ . ........ .+....++ ....+...
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~--~~~~~~~~-~~~~~~~p 73 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTAL--DWDEVNPY-AFALPLSP 73 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCC--chhccCCe-eeCCCCCh
Confidence 678999999999999999999999999999865443211 00000 0 00000000 00000011 01000000
Q ss_pred CcccccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q 016622 255 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 327 (386)
Q Consensus 255 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~ 327 (386)
.......+ +.....+.+.++.+. ++||+||||+|++... ....+.... .+.+++|+.+...++.++....+
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~~~~~~~ 151 (166)
T TIGR00347 74 HIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINHTLLTVE 151 (166)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHH
Confidence 00011111 111223444444444 7899999999986431 111122222 36789999999999999999999
Q ss_pred HHHcCCCCeEEEEEc
Q 016622 328 MFSKLKVPCIAVVEN 342 (386)
Q Consensus 328 ~l~~~~~~i~gvVlN 342 (386)
.+++.+.++.|+|+|
T Consensus 152 ~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 152 HARQTGLTLAGVILN 166 (166)
T ss_pred HHHHCCCCeEEEEeC
Confidence 999999999999998
No 78
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.34 E-value=5.4e-12 Score=102.91 Aligned_cols=111 Identities=31% Similarity=0.357 Sum_probs=69.6
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC--
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS-- 253 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~-- 253 (386)
|+++ +|||+||||++.+||..++++|++|+++|+|+ +++...++.... ....++-.+..
T Consensus 2 i~~~-GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~----------------~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAIT-GKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG----------------EIKLLLVMGMGRP 62 (116)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC----------------CceEEEEeccccc
Confidence 4555 89999999999999999999999999999999 333322221110 11111211211
Q ss_pred -CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEE
Q 016622 254 -GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (386)
Q Consensus 254 -~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV 311 (386)
........+ ..+++++..+....|||+|+||++|+......+ ...+|.+++|
T Consensus 63 ~~~g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCCCCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 122222221 255666666533899999999999987544433 3356777776
No 79
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.7e-12 Score=121.08 Aligned_cols=246 Identities=16% Similarity=0.162 Sum_probs=147.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTM 152 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l 152 (386)
+...+..+...|++|+.+.|..||= ..+|.+++.+- . -.+...--..|.-....+.+.+.+.|..+.+-....
T Consensus 21 t~~~~~~l~~~L~eI~~ALLesDV~-~~lV~~l~~ni--r-~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~--- 93 (483)
T KOG0780|consen 21 TSIDETALNTMLKEICRALLESDVN-PRLVKELRENI--R-KIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSA--- 93 (483)
T ss_pred CcchHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHH--H-HHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcc---
Confidence 3457788899999999999988872 33333332211 0 001111112334447788888999887764321111
Q ss_pred EeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCC
Q 016622 153 SAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP 232 (386)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~ 232 (386)
+. .-++.+.+|.|+ +-.|+||||++..||+++.++|+||+||-+|..++..-..+..
T Consensus 94 -~~------------~~K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq--------- 150 (483)
T KOG0780|consen 94 -LQ------------PKKGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ--------- 150 (483)
T ss_pred -cc------------cccCCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH---------
Confidence 11 112345689998 8899999999999999999999999999999988654221111
Q ss_pred CCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC------hHHHhhhhhcCCC
Q 016622 233 EKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG------DIQLTLCQVVPLT 306 (386)
Q Consensus 233 ~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~------~~~~~~~~~~~~d 306 (386)
.....++.+...+...++ -....+-++++. .+.||+||+||.+... +....+......|
T Consensus 151 ------nA~k~~iP~ygsyte~dp-----v~ia~egv~~fK----ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 151 ------NATKARVPFYGSYTEADP-----VKIASEGVDRFK----KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPD 215 (483)
T ss_pred ------HhHhhCCeeEecccccch-----HHHHHHHHHHHH----hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCC
Confidence 011112323221111111 122344555555 3899999999997653 2222333344569
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 307 AAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 307 ~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.+++|.++... +.+....+.|++ .+.+-++|+++.+....+ +..-...+..+.|+..
T Consensus 216 ~vi~VmDasiG--Qaae~Qa~aFk~-~vdvg~vIlTKlDGhakG--------GgAlSaVaaTksPIiF 272 (483)
T KOG0780|consen 216 EIIFVMDASIG--QAAEAQARAFKE-TVDVGAVILTKLDGHAKG--------GGALSAVAATKSPIIF 272 (483)
T ss_pred eEEEEEecccc--HhHHHHHHHHHH-hhccceEEEEecccCCCC--------CceeeehhhhCCCEEE
Confidence 99999887664 344444555544 366788999998865532 1222334456666653
No 80
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.32 E-value=9.8e-12 Score=111.44 Aligned_cols=189 Identities=18% Similarity=0.232 Sum_probs=112.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc-ccCCCCCceeeeccCCceEEecCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~-~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
|.|.|++...|+|||+++..|+.+|.++|.||.++..=.++... +.+.... ....... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~----d~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED----DEDAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC----SSHHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC----CchHHHHHHHhCCCc---ccccccccccCccc
Confidence 47899999999999999999999999999999988753323221 0000000 0000000 00000111111110
Q ss_pred CCCcccccCCchHHHHHHHH-HHhcCCCCCcEEEEcCCCCCCh------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~VIIDtpp~~~~------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~ 325 (386)
...-.....+ ....++++ ++.+. +.+|++||+...+... ....++.... ..+++|+.....++.++...
T Consensus 74 ~~~~~~~~~~--~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 SPHLAAELEG--VDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp -HHHHHHHHT------HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred CHHHHhhccC--CcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0000000000 01113333 34444 7999999999887641 2222333333 35888888888899999999
Q ss_pred HHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhh
Q 016622 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSY 384 (386)
Q Consensus 326 ~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~ 384 (386)
++.+++.|.++.|+|+|++... ...+.+.+..++|++|.||+++.+..
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~~ 197 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLSA 197 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT---
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCccccc
Confidence 9999999999999999996543 25788999999999999999998764
No 81
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.32 E-value=2.3e-11 Score=95.06 Aligned_cols=94 Identities=40% Similarity=0.596 Sum_probs=74.4
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (386)
|+++ +++|+||||++.+||..|++.|++|+++|
T Consensus 2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4444 77799999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 016622 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 331 (386)
Q Consensus 256 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~~~~~~~~---~l~~ 331 (386)
|+||+|++++...... .......+|.+++|+.++..++....+..+ ....
T Consensus 35 --------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~ 88 (99)
T cd01983 35 --------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAI 88 (99)
T ss_pred --------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhc
Confidence 9999999998875541 022244679999999999999998888854 3333
Q ss_pred CCCCeEEEEEc
Q 016622 332 LKVPCIAVVEN 342 (386)
Q Consensus 332 ~~~~i~gvVlN 342 (386)
.+....++|+|
T Consensus 89 ~~~~~~~vv~N 99 (99)
T cd01983 89 EGLRPVGVVVN 99 (99)
T ss_pred cCCceEEEEeC
Confidence 45667788877
No 82
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.31 E-value=4.1e-11 Score=109.25 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~ 219 (386)
|++++.|.++|||+||||+|++||.+++++|++|+++|+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 568999999999999999999999999999999999999999876543
No 83
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.31 E-value=7.1e-11 Score=113.61 Aligned_cols=168 Identities=17% Similarity=0.213 Sum_probs=103.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
.++|+|++. .|+||||++++||..+.++|++|++|++|+++......+. . .....++.+....
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk------~---------yae~lgvpv~~~~- 268 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ------G---------YADKLDVELIVAT- 268 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH------H---------HhhcCCCCEEecC-
Confidence 568999854 6999999999999999999999999999998754311110 0 0011133222110
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~----~~~~~~~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
....+...++.+.. .+.||+|||||++... ...+ .+......+.+++|..++. ...++...+
T Consensus 269 --------dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d~~~i~ 336 (407)
T PRK12726 269 --------SPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM-KSADVMTIL 336 (407)
T ss_pred --------CHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc-cHHHHHHHH
Confidence 11112223333221 1579999999998643 1111 1111223466677776643 445555666
Q ss_pred HHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCC
Q 016622 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIR 379 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d 379 (386)
+.++. +++-|+|+++.+.... .+.+-.+...+|+|+.+ .||.|
T Consensus 337 ~~f~~--l~i~glI~TKLDET~~--------~G~~Lsv~~~tglPIsylt~GQ~VpdD 384 (407)
T PRK12726 337 PKLAE--IPIDGFIITKMDETTR--------IGDLYTVMQETNLPVLYMTDGQNITEN 384 (407)
T ss_pred HhcCc--CCCCEEEEEcccCCCC--------ccHHHHHHHHHCCCEEEEecCCCCCcc
Confidence 66554 5668999999987553 15677888899999874 46654
No 84
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.30 E-value=9.2e-11 Score=107.66 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=114.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccC-CC-cccccccCCCCCceeeeccCCce--E
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV-SP-ENRLLEMNPEKRTIIPTEYLGVK--L 247 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~l-g~-~~~~~~~~~~~~~i~~~~~~~l~--v 247 (386)
|++.|.|++.-.|+|||++++.|+..|.++|++|.++..=..+ ....- +. +.+.......... +.....+. .
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g--~~~~~~~~~~~D~~~l~~~~~~--~~~~~~~~p~~ 76 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKG--SKETPEGLRNKDALVLQSVSSI--ELPYEAVNPIA 76 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccC--CccCCCCCchHHHHHHHHhcCC--CCCHHhccCee
Confidence 4567999999999999999999999999999999998653222 11000 00 0000000000000 00000000 1
Q ss_pred EecCCCCCcccccCCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHhhhhhcCCCeEEEEeCCCcchHH
Q 016622 248 VSFGFSGQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFI 320 (386)
Q Consensus 248 l~~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~vviV~~~~~~s~~ 320 (386)
+..... ........ ..+. .+.++.+. ++||+||||+.+|+... ..... ...--.+++|+.....++.
T Consensus 77 ~~~~~a---~~~~~~~i~~~~i-~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~-~~~~~pvilV~~~~lg~in 150 (231)
T PRK12374 77 LSEEES---SVAHSCPINYTLM-SNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWV-VQEQLPVLMVVGIQEGCIN 150 (231)
T ss_pred cCCCcC---hHHcCCcCCHHHH-HHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHH-HHhCCCEEEEECCCcChHH
Confidence 111110 00111111 1222 33333344 79999999999855311 11111 1112458888888888888
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChh
Q 016622 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (386)
Q Consensus 321 ~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~ 381 (386)
++.-..+.++..++++.|+|+|+++.... ......+.+.+..++|+++.||+.+.
T Consensus 151 ~~lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~~ 205 (231)
T PRK12374 151 HALLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLPR 205 (231)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999999999999999999999875321 11133567777889999999999754
No 85
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.29 E-value=5.5e-11 Score=119.52 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=104.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
++.|.|+++++|+||||++++|+++|+++|++|..+...+... +..... .+......+++...
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~--------d~~~~~------~~~g~~~~~ld~~~--- 65 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYI--------DPAYHT------AATGRPSRNLDSWM--- 65 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcc--------cHHHHH------HHhCCCcccCCcee---
Confidence 5689999999999999999999999999999999999854321 100000 00000001221111
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---------HHHhhhhhcCCCeEEEEeCCCcchH--HH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAF--ID 321 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~vviV~~~~~~s~--~~ 321 (386)
.. ...+.+.++.+. +.||++||+...|+.+ ....++.... .-+++|+.....+. ..
T Consensus 66 -------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~ 132 (451)
T PRK01077 66 -------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAA 132 (451)
T ss_pred -------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHH
Confidence 11 234444454444 7899999988865532 1223333333 34777777665332 23
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
+...+..+ ..++++.|+|+|++..... .....+..+..|+|+++.||+++.+.
T Consensus 133 l~~~~~~~-~~~i~i~GvI~N~v~~~~~--------~~~l~~~l~~~gipvLG~IP~~~~l~ 185 (451)
T PRK01077 133 LVLGFATF-DPDVRIAGVILNRVGSERH--------YQLLREALERCGIPVLGALPRDAALA 185 (451)
T ss_pred HHHHHHHh-CCCCCEEEEEEECCCChhH--------HHHHHHHHHhcCCCEEEEeeCCcccC
Confidence 33333334 2378999999999864321 02234455558999999999998763
No 86
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.29 E-value=2.9e-11 Score=95.89 Aligned_cols=83 Identities=27% Similarity=0.566 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEEEeCC
Q 016622 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP 156 (386)
Q Consensus 77 ~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l~~~p 156 (386)
+++|+++|++|+||+++.+++++|+|+++.++++ +.+.|.+.++.++|+..+.+.+.+++++..++|++++++++...+
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 5789999999999999999999999999999842 689999999999999999999999999999999999999999999
Q ss_pred CCch
Q 016622 157 ARPI 160 (386)
Q Consensus 157 ~~~~ 160 (386)
+|..
T Consensus 82 ~~~~ 85 (99)
T TIGR02945 82 PWTP 85 (99)
T ss_pred CCCh
Confidence 9843
No 87
>PRK14974 cell division protein FtsY; Provisional
Probab=99.29 E-value=6.1e-11 Score=113.86 Aligned_cols=245 Identities=19% Similarity=0.252 Sum_probs=141.2
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEE
Q 016622 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (386)
Q Consensus 75 ~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~ 151 (386)
++++++.+.|++++.-.+..|| +...++..++..-. .-... .+....+.+.+.+++.+..+.+... .++
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~------~~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~-~~~ 129 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLV------GKKVK-RGEDVEEIVKNALKEALLEVLSVGD-LFD 129 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh------hccCC-CccCHHHHHHHHHHHHHHHHhCCCc-chh
Confidence 7899999999999988888887 33455555432210 01111 1122245566777777766543211 000
Q ss_pred EEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccC
Q 016622 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (386)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~ 231 (386)
+. .. ....+.+++|+|+ |.+|+||||++++||..|.+.|++|+++++|.++......+
T Consensus 130 ~~---------~~--~~~~~~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL---------- 187 (336)
T PRK14974 130 LI---------EE--IKSKGKPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL---------- 187 (336)
T ss_pred hh---------hh--hhccCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH----------
Confidence 00 00 0011234688888 79999999999999999999999999999998764321110
Q ss_pred CCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-----hhhhhcCC
Q 016622 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPL 305 (386)
Q Consensus 232 ~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-----~~~~~~~~ 305 (386)
.......|+.+++.....+ ....+.+.++......||+|||||++... +..+ .+......
T Consensus 188 -----~~~a~~lgv~v~~~~~g~d---------p~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p 253 (336)
T PRK14974 188 -----EEHAERLGVKVIKHKYGAD---------PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP 253 (336)
T ss_pred -----HHHHHHcCCceecccCCCC---------HHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC
Confidence 0001112344443221111 12222333333223689999999998664 2211 11112346
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 306 d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
|.+++|..+... .++.+..+.+.+ .+++.|+|+|+.+....+ +..-.+...++.|+.+
T Consensus 254 d~~iLVl~a~~g--~d~~~~a~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~ 311 (336)
T PRK14974 254 DLVIFVGDALAG--NDAVEQAREFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILF 311 (336)
T ss_pred ceEEEeeccccc--hhHHHHHHHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEE
Confidence 888888877542 344444444433 245589999999875532 4566777778888765
No 88
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.28 E-value=1.7e-10 Score=96.70 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=95.8
Q ss_pred CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCCccccc
Q 016622 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIM 260 (386)
Q Consensus 181 ~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~ 260 (386)
++| +|||+++..|+..|.++|.+|..++....
T Consensus 7 ~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~----------------------------------------------- 38 (134)
T cd03109 7 GTD-IGKTVATAILARALKEKGYRVAPLKPVQT----------------------------------------------- 38 (134)
T ss_pred CCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC-----------------------------------------------
Confidence 454 99999999999999999999999987754
Q ss_pred CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC------hHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 261 RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG------DIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 261 ~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~------~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
+|++||++++|+. .....+..... ..+++|++++..++.++...++.++..|+
T Consensus 39 --------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~ 97 (134)
T cd03109 39 --------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGI 97 (134)
T ss_pred --------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCC
Confidence 5888888887653 11122222222 34899999999999999999999999999
Q ss_pred CeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecC
Q 016622 335 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (386)
Q Consensus 335 ~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP 377 (386)
.+.|++.|++..... .++ ...+.+++.+++|+++.||
T Consensus 98 ~i~gvi~N~~~~~~~-----~~~-~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 98 ILNGVLGNVIVEKEG-----LAT-LNVETIERLTGIPVLGIVP 134 (134)
T ss_pred ceeEEEEccCCCccc-----hhh-hhHHHHHHhcCCCEEEeCC
Confidence 999999999775431 111 3578899999999999988
No 89
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.3e-11 Score=110.36 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=104.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc----cc-ccccCCC-CCceeeeccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE----NR-LLEMNPE-KRTIIPTEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~----~~-~~~~~~~-~~~i~~~~~~~l 245 (386)
....-.|++|||||||||.++.||..||+-+.+||+|..||.. +++..|+.+ .. +...+.. .-.|.|.. ++
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH-NlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~--e~ 93 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH-NLSDAFSQKFTKTPTKVEGFENLFAMEIDPNV--EM 93 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc-chHHHHHHHhcCCCccccChhhheeeecCCch--hh
Confidence 3445556679999999999999999999999999999999966 555444322 11 0000000 00000100 00
Q ss_pred eEEe------------c--CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-h------------
Q 016622 246 KLVS------------F--GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T------------ 298 (386)
Q Consensus 246 ~vl~------------~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~------------ 298 (386)
.-++ . |...+....+.+-...-.+.+.+..++.-+||.||+||+|.-....+ .
T Consensus 94 ~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl 173 (323)
T KOG2825|consen 94 GDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKL 173 (323)
T ss_pred hhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHHH
Confidence 0000 0 00000011122222233444555555557899999999984321000 0
Q ss_pred ----------hhh--------------------------------hc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 299 ----------LCQ--------------------------------VV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 299 ----------~~~--------------------------------~~--~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
+.+ .. .+...+.|+.++..++.++.|+++.|.+.++
T Consensus 174 ~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~i 253 (323)
T KOG2825|consen 174 LSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGI 253 (323)
T ss_pred HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCC
Confidence 000 00 2456888999999999999999999999999
Q ss_pred CeEEEEEcCCcCCC
Q 016622 335 PCIAVVENMCHFDA 348 (386)
Q Consensus 335 ~i~gvVlN~~~~~~ 348 (386)
+...+|+|+.-+..
T Consensus 254 dthnIIVNQLL~~~ 267 (323)
T KOG2825|consen 254 DTHNIIVNQLLFPD 267 (323)
T ss_pred cccceeeeeccCCC
Confidence 99999999976543
No 90
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.26 E-value=1.9e-10 Score=103.55 Aligned_cols=201 Identities=16% Similarity=0.122 Sum_probs=121.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
|++.|.|++.-.|+|||.+++.|+.+|..+|++|.....=..+..-... +.+...... ...........+.+.+...
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~-~~D~~~l~~--~~~~~~~~~~~~py~f~~P 77 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAE-NSDALVLQR--LSGLDLSYELINPYRFKEP 77 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCC-CchHHHHHH--hcCCCcccccccceecCCC
Confidence 5789999999999999999999999999999999988653222111000 000000000 0000000011122222211
Q ss_pred CCCCccccc-CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---HHHhhhhhcC--CCeEEEEeCCCcchHHHHHHH
Q 016622 252 FSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---IQLTLCQVVP--LTAAVIVTTPQKLAFIDVAKG 325 (386)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---~~~~~~~~~~--~d~vviV~~~~~~s~~~~~~~ 325 (386)
....-+... .-....+.+..-+..+. ..||+|||...+|+.- ....+..+.. ..-+|+|+.....++..+.-.
T Consensus 78 ~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt 156 (223)
T COG0132 78 LSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLT 156 (223)
T ss_pred CCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHH
Confidence 111111111 11122233444333444 6999999999998731 0011111111 245899999999999999999
Q ss_pred HHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 016622 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTV 382 (386)
Q Consensus 326 ~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i 382 (386)
++.+++.|+++.|+|+|+......... .....+.+..+.|+++.+|+-++.
T Consensus 157 ~eal~~~gl~l~G~I~n~~~~~~~~~~------~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 157 VEALRARGLPLAGWVANGINPELDHYA------EINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHCCCCEEEEEEccCCCchhHHH------HHHHHHHHhcCCCccccccCCccc
Confidence 999999999999999999876543211 123367788899999999997764
No 91
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.24 E-value=1.4e-10 Score=103.42 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=102.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
+++|+++ |-.|+||||+++.||..+..+|++|.+|-+|.++...... .-...+.-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ---------------L~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ---------------LKTYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH---------------HHHHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH---------------HHHHHHHhccccchhhc
Confidence 3688898 7889999999999999999889999999999988543110 00111122455443221
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHH-----HhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~-----~~~~~~~~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
.. .....+.+.++....++||+|||||++... +.. ..+......+.+++|..+... ..++....
T Consensus 65 ~~---------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~ 134 (196)
T PF00448_consen 65 ES---------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQAL 134 (196)
T ss_dssp TS---------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHH
T ss_pred ch---------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHH
Confidence 11 122333333433333689999999986443 111 122223345788888877764 34555566
Q ss_pred HHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
++.+..++ -++|+.|.+..... +..-.+....+.|+..
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPISY 172 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEEE
T ss_pred HHhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeEE
Confidence 66655544 58999998865421 4566778888888764
No 92
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=4.1e-11 Score=111.38 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
|+++|.|+ |+||+||||++.+++.+++.+|++|++||+|++...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 45667776 7799999999999999999999999999999976544
No 93
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.23 E-value=4.7e-11 Score=100.57 Aligned_cols=71 Identities=24% Similarity=0.477 Sum_probs=67.0
Q ss_pred CCCCCCC-CCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEEEeCCCCch
Q 016622 87 IIDPDFG-TDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPI 160 (386)
Q Consensus 87 V~dPe~~-~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l~~~p~~~~ 160 (386)
|.|||++ .||+++|+|++|.+++ +.+.|.|++|.++||..+.|+++++++|.+. |+++++|++.+.|+|..
T Consensus 1 v~DPEi~~~sIvdLG~Vr~V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~Wt~ 72 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPWTT 72 (146)
T ss_pred CcCCCCCCCCchhcCCeeEEEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCCCh
Confidence 7899999 8999999999999988 7899999999999999999999999999986 99999999999999943
No 94
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.23 E-value=7.1e-11 Score=110.72 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=107.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+.+|.|+ |-.|+||||+.+.||++|.++|++|++.-+|..+...- ++.-.....-|+.++...
T Consensus 138 ~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi---------------EQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 138 KPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI---------------EQLEVWGERLGVPVISGK 201 (340)
T ss_pred CcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH---------------HHHHHHHHHhCCeEEccC
Confidence 45699999 88999999999999999999999999999998875431 111112223478888744
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh------hhhc------CCCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~------~~~~------~~d~vviV~~~~~~s~ 319 (386)
...+++ ..+-+.++..+.+.||+|||||++.+..-.-.+ .... +.+.+++|..+...
T Consensus 202 ~G~DpA---------aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG-- 270 (340)
T COG0552 202 EGADPA---------AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG-- 270 (340)
T ss_pred CCCCcH---------HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--
Confidence 222221 223333333334899999999998775321111 1111 12347777555443
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
+++..-.+.|.+. +++.|+|+.+++....+ +.+-.+...+++|+..
T Consensus 271 qnal~QAk~F~ea-v~l~GiIlTKlDgtAKG--------G~il~I~~~l~~PI~f 316 (340)
T COG0552 271 QNALSQAKIFNEA-VGLDGIILTKLDGTAKG--------GIILSIAYELGIPIKF 316 (340)
T ss_pred hhHHHHHHHHHHh-cCCceEEEEecccCCCc--------ceeeeHHHHhCCCEEE
Confidence 3344444445442 45789999999976654 3456788999999764
No 95
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.21 E-value=2.5e-10 Score=111.57 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=101.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH-HHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L-a~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
++|+|+ |.+|+||||++.+||..+ ..+|++|+++|+|.++......+. ......++.+.+..
T Consensus 224 ~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk---------------~yAe~lgvp~~~~~- 286 (432)
T PRK12724 224 KVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLK---------------RYADTMGMPFYPVK- 286 (432)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHH---------------HHHHhcCCCeeehH-
Confidence 466666 999999999999999876 578999999999998864321100 00011133222110
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-h-HHH-hhhh---hc---CCCeEEEEeCCCcchHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-D-IQL-TLCQ---VV---PLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~-~~~-~~~~---~~---~~d~vviV~~~~~~s~~~~~ 323 (386)
........+ ....||+|||||++... + ..+ .+.. .. ....+++|..+... ..++.
T Consensus 287 -----------~~~~l~~~l----~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-~~~~~ 350 (432)
T PRK12724 287 -----------DIKKFKETL----ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS-YHHTL 350 (432)
T ss_pred -----------HHHHHHHHH----HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-HHHHH
Confidence 011222222 22689999999976432 1 111 1111 11 12357777766653 45667
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCChh
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIRPT 381 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d~~ 381 (386)
...+.++. +++-|+|+.+.+.... .+.+-.+...++.|+.. .||.|-.
T Consensus 351 ~~~~~f~~--~~~~glIlTKLDEt~~--------~G~il~i~~~~~lPI~ylt~GQ~VPeDi~ 403 (432)
T PRK12724 351 TVLKAYES--LNYRRILLTKLDEADF--------LGSFLELADTYSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred HHHHHhcC--CCCCEEEEEcccCCCC--------ccHHHHHHHHHCCCEEEEecCCCCCCCHH
Confidence 77777755 4557999999986542 15677888888999864 5787743
No 96
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.21 E-value=3.2e-10 Score=114.46 Aligned_cols=199 Identities=18% Similarity=0.184 Sum_probs=109.0
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC-CCCCCCccCCCccc---ccc----cCCCCCceeeeccC----
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV-YGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYL---- 243 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~-~~~sl~~~lg~~~~---~~~----~~~~~~~i~~~~~~---- 243 (386)
|.|+++..++|||++++.|++.|.++|++|..+..-. ..++....-+.+.. ... .......+.|....
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 5789999999999999999999999999999987631 11111000011110 000 00001111111110
Q ss_pred -CceEEecCCCCC--cc---cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH--------HHhhhhhcCCCeEE
Q 016622 244 -GVKLVSFGFSGQ--GR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAV 309 (386)
Q Consensus 244 -~l~vl~~~~~~~--~~---~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~vv 309 (386)
...++-.+.... .. .........+.+.+.++.+. ..||+||||+++|+.+. ...++....++ ++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap-VI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD-AI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-EE
Confidence 011121121100 00 00000223344455555554 68999999999875431 22333344444 56
Q ss_pred EEeCCCcch-HHHHHHHHHHHHcC-CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 016622 310 IVTTPQKLA-FIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTV 382 (386)
Q Consensus 310 iV~~~~~~s-~~~~~~~~~~l~~~-~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i 382 (386)
+|+.....+ +..+..++..++.. +..+.|+|+|++..+. .+.+...+.+.+..|+|+++.+|+++.+
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~~l 227 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDENL 227 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCCcC
Confidence 666666553 34555555665543 3678999999987532 1112345666777899999999998653
No 97
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.20 E-value=4.3e-10 Score=118.47 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=106.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
|+|.|.|++...|+|||+++..|+.+|.++|+||.++....++|.. .. ... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~~---------~~~-------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------MS---------EVE-------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------HH---------HHH-------HHHhcc
Confidence 4678999999999999999999999999999999999855443100 00 000 000000
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHhhhhhcCCCeEEEEeCCCcchHHH----
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFID---- 321 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~vviV~~~~~~s~~~---- 321 (386)
......+.+.+.++.+. ++||+||||++.+.+.. ...++.... +.+++|++++..++.+
T Consensus 58 ---------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~-~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ---------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG-AEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ---------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhC-CCEEEEECCCCCChHHHHHH
Confidence 00111222333333444 78999999998755421 111222222 5688899888776544
Q ss_pred HHHHHHHHH-cCCCCeEEEEEcC--CcCCCCCceecc----cC-----CChHHHHHHHhCCCeEEecCCChhhh
Q 016622 322 VAKGVRMFS-KLKVPCIAVVENM--CHFDADGKRYYP----FG-----RGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 322 ~~~~~~~l~-~~~~~i~gvVlN~--~~~~~~~~~~~~----~~-----~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
+.-..+.+. +.+.++.|+|+|+ ++.......... +. ........+..++|++|.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 444445554 5578999999999 443321100000 00 00112233456899999999999876
No 98
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.14 E-value=1e-09 Score=109.82 Aligned_cols=164 Identities=21% Similarity=0.234 Sum_probs=97.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~--G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+++|+|+ |.+|+||||++.+||..+..+ |++|.++++|.++......+ .. . ....++.+...
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL------k~---y------a~iLgv~v~~a 413 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL------HS---Y------GRQLGIAVHEA 413 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH------HH---h------hcccCceeEec
Confidence 5789999 778999999999999998865 58999999998774321100 00 0 00012222110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHHh-----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQLT-----LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~~-----~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
.. ...+...++.+ .+||+|||||++... +..+. +.... ....++|+... .+..+...
T Consensus 414 ---------~d----~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAt-ss~~Dl~e 476 (559)
T PRK12727 414 ---------DS----AESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPAN-AHFSDLDE 476 (559)
T ss_pred ---------Cc----HHHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECC-CChhHHHH
Confidence 01 11233344433 579999999997543 21110 11111 12334444433 34566667
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCC
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIR 379 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d 379 (386)
.++.+... +..|+|+||++.... + +..-.+....++|+.+ .||.|
T Consensus 477 ii~~f~~~--~~~gvILTKlDEt~~------l--G~aLsv~~~~~LPI~yvt~GQ~VPeD 526 (559)
T PRK12727 477 VVRRFAHA--KPQGVVLTKLDETGR------F--GSALSVVVDHQMPITWVTDGQRVPDD 526 (559)
T ss_pred HHHHHHhh--CCeEEEEecCcCccc------h--hHHHHHHHHhCCCEEEEeCCCCchhh
Confidence 77777654 568999999886442 1 4566777788888764 45654
No 99
>PRK00784 cobyric acid synthase; Provisional
Probab=99.13 E-value=1.1e-09 Score=111.13 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=108.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCC---cc-c--ccc----cCCCCCceeeec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP---EN-R--LLE----MNPEKRTIIPTE 241 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~---~~-~--~~~----~~~~~~~i~~~~ 241 (386)
|++.|.|++...|+|||++++.|+++|+++|++|..+.. .+.+.....+. +. + ... .......+.|
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P-- 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNP-- 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCC--
Confidence 467899999999999999999999999999999998865 21111100000 00 0 000 0000001111
Q ss_pred cCCceEEecCCCCC------------cc--cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--------HHHhh
Q 016622 242 YLGVKLVSFGFSGQ------------GR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--------IQLTL 299 (386)
Q Consensus 242 ~~~l~vl~~~~~~~------------~~--~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--------~~~~~ 299 (386)
+.+-|...... +. .........+.+.+.+..+. +.||++||+..++... ....+
T Consensus 77 ---~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dl 152 (488)
T PRK00784 77 ---VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGF 152 (488)
T ss_pred ---EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHH
Confidence 11111110000 00 00001122334444444444 6899999998744321 12222
Q ss_pred hhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecC
Q 016622 300 CQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (386)
Q Consensus 300 ~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~-~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP 377 (386)
+.... --+|+|+..... ++..+.-..+.+.. .+.++.|+|+|++..+. .+-+...+.+.+..++|+++.||
T Consensus 153 ak~l~-~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~iP 225 (488)
T PRK00784 153 AEAAD-APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVLP 225 (488)
T ss_pred HHHcC-CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEcC
Confidence 22332 246777776554 45666555566653 35789999999988532 11123445577778999999999
Q ss_pred CChhh
Q 016622 378 IRPTV 382 (386)
Q Consensus 378 ~d~~i 382 (386)
+++.+
T Consensus 226 ~~~~L 230 (488)
T PRK00784 226 YLDDL 230 (488)
T ss_pred CCcCC
Confidence 98765
No 100
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.11 E-value=4.5e-10 Score=111.65 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=97.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La--~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
.++|+|+ |.+|+||||++++||..++ +.|++|++||+|+++...... +.. .....++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eq------L~~---------~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQ------LKT---------YAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHH------HHH---------HHHHhCCceEcc
Confidence 3588888 6699999999999999998 468999999999987432100 000 000112222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH--H-HhhhhhcC----CCeEEEEeCCCcchHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--Q-LTLCQVVP----LTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--~-~~~~~~~~----~d~vviV~~~~~~s~~~~~ 323 (386)
. ... .+...+..+ ..||+|||||++..... . ..+..+.. ...+++|+.+. ....++.
T Consensus 285 ~---------~~~----~l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPK----ELAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred C---------CHH----hHHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 1 111 122233333 57999999999754321 0 01111211 23456665554 3556777
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
++++.++..+ +-++|+++.+.... + +.+-.+....|+|+..
T Consensus 349 ~~~~~f~~~~--~~~vI~TKlDet~~------~--G~i~~~~~~~~lPv~y 389 (424)
T PRK05703 349 DIYKHFSRLP--LDGLIFTKLDETSS------L--GSILSLLIESGLPISY 389 (424)
T ss_pred HHHHHhCCCC--CCEEEEeccccccc------c--cHHHHHHHHHCCCEEE
Confidence 7888887655 46899999986442 1 4577888888999874
No 101
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.07 E-value=2.9e-09 Score=104.23 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=98.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH----CCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~----~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (386)
+++|+++ |..|+||||+++.||..+.. .|++|+++++|.++......+.. ....-|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~---------------~a~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT---------------YGDIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH---------------HhhcCCcceE
Confidence 4577777 88899999999999998873 58999999999987543211100 0000122221
Q ss_pred ecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH------hhhhhcCCC-eEEEEeCCCcchHHH
Q 016622 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLT-AAVIVTTPQKLAFID 321 (386)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~~~d-~vviV~~~~~~s~~~ 321 (386)
... ....+...+... ..||+|||||++....... ........+ .+++|..+... ..+
T Consensus 238 ~~~-------------~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AIE-------------SFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred eeC-------------cHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 100 012233333333 6899999999976542111 111111123 67888777664 455
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
+.+.++.+.. +++-|+|+.+.+..... +.+-.+...+++|+..
T Consensus 302 ~~~~~~~~~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~y 344 (388)
T PRK12723 302 VKEIFHQFSP--FSYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSY 344 (388)
T ss_pred HHHHHHHhcC--CCCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEE
Confidence 6666666654 45679999998865531 5677888888888764
No 102
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.05 E-value=6.9e-09 Score=96.82 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=106.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
..+|+|. |++|+||||+...|+..+..+|++|+++++|.++...... +. ......++.+....
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~q------l~---------~~~~~~~~~~~~~~- 137 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQ---------DYVKTIGFEVIAVR- 137 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH------HH---------HHhhhcCceEEecC-
Confidence 3588888 7799999999999999999889999999999876322110 00 00001133332210
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~----~~~~~~~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
....+...++.+.+ ..+||+|||||++... ...+ .+......+.+++|..+... -.++...+
T Consensus 138 --------~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~ 205 (270)
T PRK06731 138 --------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEII 205 (270)
T ss_pred --------CHHHHHHHHHHHHh---cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHH
Confidence 11112223333321 1479999999998663 1111 22222345677888776543 35666677
Q ss_pred HHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCChh
Q 016622 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIRPT 381 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d~~ 381 (386)
+.+.. +++-|+|+.|.+.... .+.+-.+....+.|+.. .+|.|-.
T Consensus 206 ~~f~~--~~~~~~I~TKlDet~~--------~G~~l~~~~~~~~Pi~~it~Gq~vp~di~ 255 (270)
T PRK06731 206 TNFKD--IHIDGIVFTKFDETAS--------SGELLKIPAVSSAPIVLMTDGQDVKKNIH 255 (270)
T ss_pred HHhCC--CCCCEEEEEeecCCCC--------ccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence 77765 6678999999886552 15677888889999874 5776643
No 103
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.04 E-value=2.2e-09 Score=101.56 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=54.3
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceec----ccCCChHHHHHHHhCCCeEEecCCC
Q 016622 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYY----PFGRGSGSQVVQQFGIPHLFDLPIR 379 (386)
Q Consensus 306 d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~----~~~~~~~~~i~~~~g~pvl~~IP~d 379 (386)
..+++|+.|+..++.++.++++.+++.+.++.++|+|++.....+..++ ...+..++++.+.++-.-+..+|+.
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 4589999999999999999999999999999999999987753222211 1223456777777754344556754
No 104
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.00 E-value=1.1e-08 Score=94.39 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=100.2
Q ss_pred ccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC-ccCCCcccccccCCCCCceeeeccCCceE
Q 016622 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKL 247 (386)
Q Consensus 169 ~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~-~~lg~~~~~~~~~~~~~~i~~~~~~~l~v 247 (386)
..+.+.+|+|| |-+|+||||+.-.|...|.++|+||.++--||..|-.. .++|-.-+... ....+|+++
T Consensus 47 ~tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~---------~~~~~~vFi 116 (323)
T COG1703 47 RTGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQR---------LAVDPGVFI 116 (323)
T ss_pred cCCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHh---------hccCCCeEE
Confidence 34567899999 99999999999999999999999999999999776442 23332221111 111457777
Q ss_pred EecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH
Q 016622 248 VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV 326 (386)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~ 326 (386)
-|.+..+..- .++....+.+..+....||+|||.|-+ .+.....+. .-+|.+++|+.|+.. .++..+..+
T Consensus 117 Rs~~srG~lG------GlS~at~~~i~~ldAaG~DvIIVETVG-vGQsev~I~--~~aDt~~~v~~pg~GD~~Q~iK~Gi 187 (323)
T COG1703 117 RSSPSRGTLG------GLSRATREAIKLLDAAGYDVIIVETVG-VGQSEVDIA--NMADTFLVVMIPGAGDDLQGIKAGI 187 (323)
T ss_pred eecCCCccch------hhhHHHHHHHHHHHhcCCCEEEEEecC-CCcchhHHh--hhcceEEEEecCCCCcHHHHHHhhh
Confidence 7655432211 123444455555555799999999985 432222232 234889999888875 455555555
Q ss_pred HHHHcCCCCeEEEEEcCCcC
Q 016622 327 RMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~ 346 (386)
--+.+. +|+||.+.
T Consensus 188 mEiaDi------~vINKaD~ 201 (323)
T COG1703 188 MEIADI------IVINKADR 201 (323)
T ss_pred hhhhhe------eeEeccCh
Confidence 444432 78899884
No 105
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.97 E-value=8.7e-09 Score=107.67 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=105.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G-~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+++|+|+ |-.|+||||+...||..+. ..| ++|.++++|.++......+. ......++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~---------------~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLR---------------IYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHH---------------HHHHhCCCCcccc
Confidence 4699998 8899999999999999885 566 69999999987744311100 0001112222110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-----~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
. . ...+...++.+ ..||+|||||++... +..+ .+......+.+++|+.+.. ..+++..
T Consensus 249 ~---------~----~~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 K---------D----AADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred C---------C----HHHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 0 1 11234444444 578999999997442 1111 1111223467888887664 4566777
Q ss_pred HHHHHHcC-CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCC
Q 016622 325 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIR 379 (386)
Q Consensus 325 ~~~~l~~~-~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d 379 (386)
+++.++.. +.++-|+|++|.+.... .+.+-.+...+++|+.+ .||.|
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~--------~G~iL~i~~~~~lPI~yit~GQ~VPdD 365 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATH--------LGPALDTVIRHRLPVHYVSTGQKVPEH 365 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCC--------ccHHHHHHHHHCCCeEEEecCCCChhh
Confidence 77777654 45678999999986553 15677888888888764 46655
No 106
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.96 E-value=7.5e-09 Score=100.18 Aligned_cols=167 Identities=22% Similarity=0.274 Sum_probs=103.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC--CCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV--YGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~--~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
.|.+.+...|+||||+|..|.++|+++|++|--+..-| -.|+.+... .-....|||..-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~a----------------tG~~srNLD~~m--- 62 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAA----------------TGRPSRNLDSWM--- 62 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHh----------------hCCccCCCchhh---
Confidence 57888999999999999999999999999887766533 222222210 001112333321
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH---------HHhhhhhcCCCeEEEEeCCCcch--HHH
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLA--FID 321 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~---------~~~~~~~~~~d~vviV~~~~~~s--~~~ 321 (386)
+. .+.+++++.... ++.|+.||..--|+-|- ...++.+.. --||+|++....+ +..
T Consensus 63 -------m~----~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AA 129 (451)
T COG1797 63 -------MG----EEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAA 129 (451)
T ss_pred -------cC----HHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHH
Confidence 11 234555554444 78899988776655322 222233333 2477787776654 333
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHH-hCCCeEEecCCChhh
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTV 382 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~-~g~pvl~~IP~d~~i 382 (386)
+...++.++ -++++.|||+||+..... + ...++..+. +|+|++|.||.++.+
T Consensus 130 iv~G~~~fd-p~v~iaGVIlNrVgserH----~----~llr~Ale~~~gv~vlG~lpr~~~l 182 (451)
T COG1797 130 IVKGFKHFD-PDVNIAGVILNRVGSERH----Y----ELLRDALEEYTGVPVLGYLPRDDDL 182 (451)
T ss_pred HHHHHHhcC-CCCceEEEEEecCCCHHH----H----HHHHHHhhhcCCCcEEEEecCCccc
Confidence 444444443 267899999999986542 1 234455555 789999999999865
No 107
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=2.3e-08 Score=95.37 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc-cCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
.+++|+|+ |.+|+||||++.+|+..+.+.|++|.+|++|++.+-... +++....+.. ....+++.+.+.
T Consensus 33 ~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 102 (300)
T TIGR00750 33 NAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRSM 102 (300)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeeec
Confidence 45688888 999999999999999999999999999999997653221 1221111100 001234444433
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~ 330 (386)
+.... +.+. .....++++.+....||+|||||++ .+...... ...+|.++++..+... .++......+.
T Consensus 103 ~~~~~----~~~~--~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~~--~el~~~~~~l~ 171 (300)
T TIGR00750 103 PTRGH----LGGL--SQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGTG--DDLQGIKAGLM 171 (300)
T ss_pred Ccccc----ccch--hHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCcc--HHHHHHHHHHh
Confidence 32110 1111 1223333333333689999999995 54333333 3345788887655532 33333333332
Q ss_pred cCCCCeEEEEEcCCcCC
Q 016622 331 KLKVPCIAVVENMCHFD 347 (386)
Q Consensus 331 ~~~~~i~gvVlN~~~~~ 347 (386)
+.+. -+|+||++..
T Consensus 172 --~~~~-ivv~NK~Dl~ 185 (300)
T TIGR00750 172 --EIAD-IYVVNKADGE 185 (300)
T ss_pred --hhcc-EEEEEccccc
Confidence 2232 4888999864
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.94 E-value=1.1e-08 Score=102.92 Aligned_cols=170 Identities=20% Similarity=0.243 Sum_probs=98.3
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (386)
|.|++...|+|||++++.|+++|+++|++|..+..- +. . .+..... .+.-....+++..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d---~--~D~~~~~------~~~g~~~~~ld~~------- 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PD---Y--IDPMFHT------QATGRPSRNLDSF------- 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CC---C--CCHHHHH------HHhCCchhhCCcc-------
Confidence 688999999999999999999999999999999862 11 0 0100000 0000000011100
Q ss_pred cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---------HHHhhhhhcCCCeEEEEeCCCcc--hHHHHHH
Q 016622 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAK 324 (386)
Q Consensus 256 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~vviV~~~~~~--s~~~~~~ 324 (386)
.. ....+.+.+..+. +.+|++||....|+-+ ....++.... .-+++|+..... ++..+..
T Consensus 61 ---~~----~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~~~t~~al~~ 131 (449)
T TIGR00379 61 ---FM----SEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRLSRSAAAIVL 131 (449)
T ss_pred ---cC----CHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchHHHHHHHHHH
Confidence 01 1234445454444 6899999999865531 1222333332 246777665531 1112222
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
....+ +.++++.|+|+|++..... + ....+.+.+.+++|++|.||+++.+.
T Consensus 132 ~~~~~-~~~i~i~GvIlN~v~~~~~----~---~~~~~~i~~~~gipvLG~IP~~~~l~ 182 (449)
T TIGR00379 132 GYRSF-DPGVKLKGVILNRVGSERH----L---EKLKIAVEPLRGIPILGVIPRQQDLK 182 (449)
T ss_pred HHHhh-CCCCCEEEEEEECCCCHHH----H---HHHHHHHHHhCCCCEEEEecCccccC
Confidence 22222 3478999999999875321 1 12344555667999999999997663
No 109
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.90 E-value=1e-08 Score=102.29 Aligned_cols=50 Identities=30% Similarity=0.402 Sum_probs=46.0
Q ss_pred CceEEEEEeCcC---CCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 172 ~~kvI~v~s~kG---GvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
..|+|.|+|..+ |+||||+++|||..|++.|+||+++ ++.|+++..||..
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli---LR~Psl~~~fg~k 106 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIK 106 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE---EecCCcccccCCC
Confidence 468999999999 9999999999999999999999999 8899998887654
No 110
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=5.3e-09 Score=95.35 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=86.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC-ccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~-~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
...+|+|| |-+|+||||+.-.|+..+.++|+||.++-.||..|-.. .++|-.-+... ....+|+++-|.
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~---------~~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQE---------LSRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHH---------HHTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcC---------cCCCCCEEEeec
Confidence 45799998 89999999999999999999999999999999776443 23442222111 113457888775
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF 329 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l 329 (386)
......- -++....+.+..+..-.||+|||.|-+ .+.....+. ..+|.+++|..|+.. .++..+..+--+
T Consensus 98 atRG~lG------Gls~~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I~--~~aD~~v~v~~Pg~GD~iQ~~KaGimEi 168 (266)
T PF03308_consen 98 ATRGSLG------GLSRATRDAVRLLDAAGFDVIIIETVG-VGQSEVDIA--DMADTVVLVLVPGLGDEIQAIKAGIMEI 168 (266)
T ss_dssp ---SSHH------HHHHHHHHHHHHHHHTT-SEEEEEEES-SSTHHHHHH--TTSSEEEEEEESSTCCCCCTB-TTHHHH
T ss_pred CcCCCCC------CccHhHHHHHHHHHHcCCCEEEEeCCC-CCccHHHHH--HhcCeEEEEecCCCccHHHHHhhhhhhh
Confidence 5432211 123334444444433689999999984 454344443 335899999888774 344444444333
Q ss_pred HcCCCCeEEEEEcCCcC
Q 016622 330 SKLKVPCIAVVENMCHF 346 (386)
Q Consensus 330 ~~~~~~i~gvVlN~~~~ 346 (386)
.+ -+|+||.+.
T Consensus 169 aD------i~vVNKaD~ 179 (266)
T PF03308_consen 169 AD------IFVVNKADR 179 (266)
T ss_dssp -S------EEEEE--SH
T ss_pred cc------EEEEeCCCh
Confidence 33 277798873
No 111
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.86 E-value=8.3e-08 Score=93.30 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=99.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G-~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
..+|+|+ |..|+||||+++.||..+. +.| ++|.+|.+|.++......+. .....-|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~---------------~~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLR---------------IFGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHH---------------HHHHHcCCceEec
Confidence 4588877 9999999999999999876 456 69999999998643211100 0001112222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH-hhhhh---cCCCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQV---VPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~-~~~~~---~~~d~vviV~~~~~~s~~~~~~ 324 (386)
. ........+.+ + .++|+|||||++... .... .+..+ ...+..++|+.+.. ...++..
T Consensus 201 ~---------~~~~l~~~l~~----l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 K---------DGGDLQLALAE----L--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred C---------CcccHHHHHHH----h--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 1 11112222322 2 678999999996442 1111 11112 12345677777655 3445555
Q ss_pred HHHHHHcCC-------CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCCh
Q 016622 325 GVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIRP 380 (386)
Q Consensus 325 ~~~~l~~~~-------~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d~ 380 (386)
.++.+.... .++.|+|+.|.+.... .+.+-.+....++|+.+ .||.|-
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~yvt~Gq~VPedl 324 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASN--------LGGVLDTVIRYKLPVHYVSTGQKVPENL 324 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCC--------ccHHHHHHHHHCcCeEEEecCCCCCccc
Confidence 555555432 2467999999886542 25677788888888764 567653
No 112
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.84 E-value=7.7e-08 Score=92.34 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=90.8
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc-cCCCcccccccCCCCCceeeeccCCceEEe
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (386)
+.+.+|+|+ |.+|+||||++..|+..+...|++|.++..|++.+.... ++|....... ....++..+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 345689998 779999999999999999999999999999997753321 2332111110 01223444444
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHH
Q 016622 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRM 328 (386)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~-~~~~s~~~~~~~~~~ 328 (386)
.+.... +. .....+.+.+..+....||+|||||++... ....+ ...+|.+++|+. +....+...+.. .
T Consensus 124 ~~~~~~----l~--~~a~~~~~~~~~~~~~g~d~viieT~Gv~q-s~~~i--~~~aD~vlvv~~p~~gd~iq~~k~g--i 192 (332)
T PRK09435 124 SPSSGT----LG--GVARKTRETMLLCEAAGYDVILVETVGVGQ-SETAV--AGMVDFFLLLQLPGAGDELQGIKKG--I 192 (332)
T ss_pred cCCccc----cc--chHHHHHHHHHHHhccCCCEEEEECCCCcc-chhHH--HHhCCEEEEEecCCchHHHHHHHhh--h
Confidence 322110 11 123344444444444789999999996432 22223 334698888876 444455544431 2
Q ss_pred HHcCCCCeEEEEEcCCcCCC
Q 016622 329 FSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 329 l~~~~~~i~gvVlN~~~~~~ 348 (386)
++... -+|+||.+...
T Consensus 193 ~E~aD----IiVVNKaDl~~ 208 (332)
T PRK09435 193 MELAD----LIVINKADGDN 208 (332)
T ss_pred hhhhh----eEEeehhcccc
Confidence 22222 38899988543
No 113
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.80 E-value=5.7e-08 Score=91.00 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=36.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|++|+|++.| |+||||++.+|+..|+++| +|++|+.|...
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 4689999775 9999999999999999999 89999999855
No 114
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.76 E-value=3.1e-07 Score=92.15 Aligned_cols=169 Identities=12% Similarity=0.028 Sum_probs=101.4
Q ss_pred ccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEE
Q 016622 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (386)
Q Consensus 169 ~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (386)
.++.++.|.|++...|+||||+|+.|+.+|.++ |..+.+.+....+ . +.++.+
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~id~--------------------~----p~~~~~ 286 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDVRDI--------------------V----PSLYLL 286 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCChhhc--------------------C----Ccceec
Confidence 344577899999999999999999999999975 7777643211000 0 011111
Q ss_pred ecCCCCCcccc--cC-CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH---------HHhhhhhcCCCeEEEEeCCCc
Q 016622 249 SFGFSGQGRAI--MR-GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQK 316 (386)
Q Consensus 249 ~~~~~~~~~~~--~~-~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~---------~~~~~~~~~~d~vviV~~~~~ 316 (386)
........+.. .. .......++.+. ...+|++||+...|+.+. ...++.... --+|+|+....
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~----~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~ 361 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVK----NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSK 361 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHH----hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCC
Confidence 00000000000 00 012223344421 146899999998876442 112232332 35888888888
Q ss_pred chHHHHHH----HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecC
Q 016622 317 LAFIDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (386)
Q Consensus 317 ~s~~~~~~----~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP 377 (386)
.++..+.. +.+++++.++++.|+|+|++.... + .....++.+..|+|++|.+|
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~----~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----I----FEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----H----HHHHHHHHHhcCCCEEEecc
Confidence 77555444 345666778999999999988432 1 13457777779999999844
No 115
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.75 E-value=1.7e-07 Score=93.91 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=93.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G-~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+++|+|+ |-.|+||||++.+||..+. ++| ++|.+|++|.++...... + .......|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQ------L---------r~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQ------L---------RIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHH------H---------HHHHHHhCCCeecc
Confidence 4699999 8899999999999999886 556 599999999866332110 0 00001112211110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHH--HhhhhhcC---CCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ--LTLCQVVP---LTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~--~~~~~~~~---~d~vviV~~~~~~s~~~~~~ 324 (386)
. ... +....+ ..+ .++|+++|||++... +.. .....+.. ....++|..... ...++.+
T Consensus 320 ~---------~~~---Dl~~aL-~~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~-~~~~l~~ 383 (484)
T PRK06995 320 K---------DAA---DLRLAL-SEL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS-HGDTLNE 383 (484)
T ss_pred C---------Cch---hHHHHH-Hhc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC-cHHHHHH
Confidence 0 000 111122 222 578999999975332 111 11111111 233566665544 3356666
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..+.++.. .+.|+|+||.+.... .+.+-.+...+++|+.+
T Consensus 384 i~~~f~~~--~~~g~IlTKlDet~~--------~G~~l~i~~~~~lPI~y 423 (484)
T PRK06995 384 VVQAYRGP--GLAGCILTKLDEAAS--------LGGALDVVIRYKLPLHY 423 (484)
T ss_pred HHHHhccC--CCCEEEEeCCCCccc--------chHHHHHHHHHCCCeEE
Confidence 77777654 457999999886542 15677888888888764
No 116
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.73 E-value=1.1e-07 Score=94.24 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=99.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
+.|.|++...|+||||+++.|+.+|.++|.+|..+...+..-. ..... .+.-....+++-.
T Consensus 2 ~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD--------~~~~~------~~~g~~~~nld~~----- 62 (433)
T PRK13896 2 KGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFID--------PSHHE------AVAGRPSRTLDPW----- 62 (433)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCC--------HHHHH------HHhCCCcccCChh-----
Confidence 4689999999999999999999999999999998886432110 00000 0000000122100
Q ss_pred CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH----HHhhhhhcCCCeEEEEeCCCcchHH--HHHHHHH
Q 016622 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAFI--DVAKGVR 327 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~----~~~~~~~~~~d~vviV~~~~~~s~~--~~~~~~~ 327 (386)
+.+ .+.+.+.+. + ..+|++||....|+-+. ...++.... --+|+|+.+...+.. .+...+.
T Consensus 63 ------~~~---~~~i~~~~~--~-~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~ 129 (433)
T PRK13896 63 ------LSG---EDGMRRNYY--R-GEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFR 129 (433)
T ss_pred ------hCC---HHHHHHHHH--h-hcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHH
Confidence 011 122333332 1 45899999998887432 122222222 248888887777544 3344443
Q ss_pred HHHc---CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 016622 328 MFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTV 382 (386)
Q Consensus 328 ~l~~---~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i 382 (386)
.+.. .++++.|||+|++...... ...++..+. ++|++|.||.++.+
T Consensus 130 ~~~~~~~~~~~i~GvIlN~~~~~~h~--------~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 130 AYADRIGRDIDVAGVIAQRAHGGRHA--------DGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHhccCCCcEEEEEEECCCcHHHH--------HHHHHhhhh-cCceeEecccCCCC
Confidence 3333 3799999999998753210 112333333 79999999998765
No 117
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.5e-08 Score=95.16 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=137.1
Q ss_pred cccHHHHHHHhccCCCCCCCCCcc---ccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEE
Q 016622 74 GTAENDVLKALSQIIDPDFGTDIV---SCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (386)
Q Consensus 74 ~~~~~~i~~~L~~V~dPe~~~div---~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v 150 (386)
.++++|+..+|++.++-.+-.+|. ..-+..+|.-+-. |+. +.........+.+..+++|.++..- ...|
T Consensus 292 ~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Le-gkk------v~sfs~V~~Tvk~Al~daLvQILTP-~~sV 363 (587)
T KOG0781|consen 292 SLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLE-GKK------VGSFSTVESTVKEALRDALVQILTP-QRSV 363 (587)
T ss_pred cccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh-hcc------cccchHHHHHHHHHHHHHHHHHcCC-Cchh
Confidence 445777777777777777766662 2334344332211 111 1111122445555666666555310 0111
Q ss_pred EEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc-ccc
Q 016622 151 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLE 229 (386)
Q Consensus 151 ~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~-~~~ 229 (386)
.+- ++=..+.-++.+-+|.|+ |-.||||||--+.+|++|-+.++||++.-||+.+...-..++...+ +..
T Consensus 364 DlL--------RdI~sar~~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~ 434 (587)
T KOG0781|consen 364 DLL--------RDIMSARRRKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA 434 (587)
T ss_pred hHH--------HHHHHHHhcCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 110 000012223456799999 8899999999999999999999999999999988654222111100 000
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHh------hhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------~~~~~ 303 (386)
+ ...-+.++-.|+.. ......++.++..+.+.||+|+|||++...+.... +....
T Consensus 435 l----------~~~~v~lfekGYgk---------d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~ 495 (587)
T KOG0781|consen 435 L----------HGTMVELFEKGYGK---------DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVN 495 (587)
T ss_pred h----------ccchhHHHhhhcCC---------ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcC
Confidence 0 00112222222222 23445666666666689999999999877542221 12233
Q ss_pred CCCeEEEEeCC--CcchHHHHHHHHHHHHcCCC--CeEEEEEcCCcC
Q 016622 304 PLTAAVIVTTP--QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 346 (386)
Q Consensus 304 ~~d~vviV~~~--~~~s~~~~~~~~~~l~~~~~--~i~gvVlN~~~~ 346 (386)
..|.+++|.++ +..++..+..+-+.|.+... .+-|+|+.+++.
T Consensus 496 ~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 496 KPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred CCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence 46899999775 44578888888888877642 367999999874
No 118
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.61 E-value=7.5e-08 Score=90.99 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=37.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-C-CcEEEEEcCCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 215 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-G-~rVllID~D~~~~ 215 (386)
+++|+|+ |.+|+||||++++||.+++.+ | ++|++|++|+++.
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4689988 669999999999999999976 5 9999999999774
No 119
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.59 E-value=6.2e-07 Score=86.86 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=105.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La--~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
.++|+++ |-.||||||+-+.||+.+. ...+||.+|-.|.++-.....+..- ...-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y---------------a~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY---------------ADIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHH---------------HHHhCCceEE-
Confidence 6789998 8889999999999999999 5568999999999885432211100 0001222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-----~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
..... -+...+..+ .+||+|+|||.+... |... .+........+.+|...+. ...+++.
T Consensus 266 --------v~~~~----el~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlke 330 (407)
T COG1419 266 --------VYSPK----ELAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKE 330 (407)
T ss_pred --------ecCHH----HHHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHH
Confidence 01112 333334333 688999999986432 2111 1111112344566665554 5578888
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE-----ecCCChhh
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-----DLPIRPTV 382 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~-----~IP~d~~i 382 (386)
+++.+... ++-|+|+.+.+.... -+..-.+....+.|+.. .||.|-.+
T Consensus 331 i~~~f~~~--~i~~~I~TKlDET~s--------~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~v 383 (407)
T COG1419 331 IIKQFSLF--PIDGLIFTKLDETTS--------LGNLFSLMYETRLPVSYVTNGQRVPEDIVV 383 (407)
T ss_pred HHHHhccC--CcceeEEEcccccCc--------hhHHHHHHHHhCCCeEEEeCCCCCCchhhh
Confidence 99888875 557999999885442 14566777777888774 57877544
No 120
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.44 E-value=5.9e-07 Score=88.71 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=116.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc----------cC----CCC-Ccee
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE----------MN----PEK-RTII 238 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~----------~~----~~~-~~i~ 238 (386)
+.|+|.+....+|||++++.|++.++++|++|.=+.. |+-++..+.-.+..... .. ... -.+.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK 79 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--QNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK 79 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCch--hhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEe
Confidence 3688888999999999999999999999999965533 33333333221111000 00 000 1122
Q ss_pred eeccCCceEEecCCCCCcc--cc-c--CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH--------hhhhhcCC
Q 016622 239 PTEYLGVKLVSFGFSGQGR--AI-M--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------TLCQVVPL 305 (386)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~--~~-~--~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~--------~~~~~~~~ 305 (386)
|....+..++-.|...... .. + ..+.....+.+.++.+. +.||+|++...++-....+ .++....
T Consensus 80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d- 157 (486)
T COG1492 80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD- 157 (486)
T ss_pred ecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhcC-
Confidence 2223356666555432111 11 0 11223445666666555 8999999999875432211 2222221
Q ss_pred CeEEEEeCCCcch-HHHHHHHHHHHHcC-CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 306 TAAVIVTTPQKLA-FIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 306 d~vviV~~~~~~s-~~~~~~~~~~l~~~-~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
.-+|+|..-+... +..+.-++..|... ...+.|+|+|+++.+.. .-...++.+.+.+|+|++|.+||.....
T Consensus 158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~------ll~~gik~Le~~tg~~vlGv~P~~~~~~ 231 (486)
T COG1492 158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDES------LLDPGLKWLEELTGVPVLGVLPYLKDAL 231 (486)
T ss_pred CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHH------HHhhHHHHHHHhhCCeeEeecccccccc
Confidence 2377777766632 22333334444332 45688999999887652 2235789999999999999999986543
No 121
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=3.1e-05 Score=76.67 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=93.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HC-CCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~-G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+.+|++. |..|+||||+...||..+. .. +.++.++-+|.++......+ ......-|+.+...
T Consensus 191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL---------------~~~a~ilGvp~~~v 254 (420)
T PRK14721 191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL---------------RIYGKLLGVSVRSI 254 (420)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH---------------HHHHHHcCCceecC
Confidence 4689998 9999999999999998654 33 47899998888664321100 00001112222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHH--Hhhhhh---cCCCeEEEEeCCCcchHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ--LTLCQV---VPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~--~~~~~~---~~~d~vviV~~~~~~s~~~~~~ 324 (386)
. .... +...+..+ .++|+|+|||++-.. +.. ..+..+ ......++|+.+.. ...++..
T Consensus 255 ~---------~~~d----l~~al~~l--~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~~~ 318 (420)
T PRK14721 255 K---------DIAD----LQLMLHEL--RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTLDE 318 (420)
T ss_pred C---------CHHH----HHHHHHHh--cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHHHH
Confidence 0 0111 11222222 689999999974332 111 111112 12346777776664 4466677
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.+..++. .++-|+|+++.+.... .+.+-.+....++|+..
T Consensus 319 ~~~~f~~--~~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~y 358 (420)
T PRK14721 319 VISAYQG--HGIHGCIITKVDEAAS--------LGIALDAVIRRKLVLHY 358 (420)
T ss_pred HHHHhcC--CCCCEEEEEeeeCCCC--------ccHHHHHHHHhCCCEEE
Confidence 7777765 5567999999886542 15667777888888764
No 122
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.19 E-value=1.3e-05 Score=73.34 Aligned_cols=160 Identities=22% Similarity=0.277 Sum_probs=88.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeec-cCCceEEecC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFG 251 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~-~~~l~vl~~~ 251 (386)
+.+|.|. |-.|+||||+...|-.++..++.+.-+|.+||.-..++.-.+++-+ +.+...+ -... +
T Consensus 19 p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--------DtVkYkEvMkqY-----~ 84 (366)
T KOG1532|consen 19 PVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--------DTVKYKEVMKQY-----Q 84 (366)
T ss_pred CcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--------hhhhHHHHHHHh-----C
Confidence 4466666 8899999999999999999998899999999976666543332211 1110000 0000 0
Q ss_pred CCCCcccccCCchHHHHHH---HHHHhcCCCCCcEEEEcCCCCCCh---------HHHhhhhhcCCCeEEEEeCCCcch-
Q 016622 252 FSGQGRAIMRGPMVSGVIN---QLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLA- 318 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~---~ll~~~~~~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~vviV~~~~~~s- 318 (386)
...++.....-..+...+. .+++... +.+||||||||+.... ..-+++...+.-.+.+|-++...+
T Consensus 85 LGPNGgI~TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p 163 (366)
T KOG1532|consen 85 LGPNGGIVTSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSP 163 (366)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCc
Confidence 0111111111122333444 3333333 6799999999985421 111222222211222333333222
Q ss_pred ---HHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 319 ---FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 319 ---~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
.....-....|-+..++.+ +++|+.+-..
T Consensus 164 ~tFMSNMlYAcSilyktklp~i-vvfNK~Dv~d 195 (366)
T KOG1532|consen 164 TTFMSNMLYACSILYKTKLPFI-VVFNKTDVSD 195 (366)
T ss_pred hhHHHHHHHHHHHHHhccCCeE-EEEecccccc
Confidence 4455666677778888866 8889988644
No 123
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.06 E-value=3.9e-05 Score=71.97 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+++.|+|||+...........+..+|.+++|+.+.........+.++.+...+.+.+ +++||++......
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~~------ 133 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERADF------ 133 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCCH------
Confidence 467899999999754322223334556799999999887666667777888888888866 6889998654311
Q ss_pred CChHHHHHHHhCCCeE-EecCCCh
Q 016622 358 RGSGSQVVQQFGIPHL-FDLPIRP 380 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl-~~IP~d~ 380 (386)
....+++.+.++.+++ ..+|...
T Consensus 134 ~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 134 DKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHhCCCeEEEEecccC
Confidence 1346778888887655 4677543
No 124
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.96 E-value=0.00015 Score=70.20 Aligned_cols=43 Identities=37% Similarity=0.429 Sum_probs=38.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
-++++. |--++||||+|.-||-.+-.+|++|.+||+|+.++.+
T Consensus 74 ~~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 74 GVVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred cEEEEE-CCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 388888 5559999999999999999999999999999988764
No 125
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.92 E-value=2e-05 Score=78.20 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=47.2
Q ss_pred CceEEEEEeCcC---CCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc
Q 016622 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (386)
Q Consensus 172 ~~kvI~v~s~kG---GvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~ 226 (386)
..|+|.|+|..+ |+||||++++||..|++.|+||+++ ++.|++...||....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence 468999999999 9999999999999999999999988 889999998876543
No 126
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.89 E-value=6.8e-06 Score=75.65 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=29.1
Q ss_pred CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc
Q 016622 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (386)
Q Consensus 181 ~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~ 219 (386)
|-.|+||||.+.++..++...|++|.+|.+||....++.
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y 41 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPY 41 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccccc
Confidence 667999999999999999999999999999997765543
No 127
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.85 E-value=2.8e-05 Score=77.96 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=47.1
Q ss_pred CceEEEEEeCcC---CCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc
Q 016622 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (386)
Q Consensus 172 ~~kvI~v~s~kG---GvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~ 226 (386)
..|+|.|+|.-+ |+||||++++||..|++.|+|| ||+ ++.|++...||....
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCCC
Confidence 468999999999 9999999999999999999999 888 999999988876543
No 128
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.85 E-value=0.00034 Score=64.43 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+.+.++|||+...........+..+|.+++|+.....-.......++.+++.+.+++ +++||++..... +
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~-----~- 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD-----L- 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC-----H-
Confidence 367889999998543222222233456799999988766544566777888888888876 788999865421 1
Q ss_pred CChHHHHHHHhCCCeE
Q 016622 358 RGSGSQVVQQFGIPHL 373 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl 373 (386)
....+++.+.++.+++
T Consensus 134 ~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 134 EKVYQEIKEKLSSDIV 149 (237)
T ss_pred HHHHHHHHHHHCCCeE
Confidence 2467888899986544
No 129
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.84 E-value=0.00029 Score=66.05 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|..+.+.++|||+...........+..+|.+++|+.+...--....+.++.++..+.+++ +++||++..... +
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a~-----~- 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGRD-----P- 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCCC-----H-
Confidence 478899999998643211112233456799999988765433445667777777788865 678999854321 0
Q ss_pred CChHHHHHHHhCCCeEE-ecCC
Q 016622 358 RGSGSQVVQQFGIPHLF-DLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl~-~IP~ 378 (386)
....+++.+.++.+.+. .+|.
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 12367888888876543 4554
No 130
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.84 E-value=0.00054 Score=73.50 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCcEEEEcCCCCCC-----h-HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTG-----D-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~-~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+|++||.+.+|+- + ....+..... --+|+|+.....++..+.-.++.++..|+++.|+|+|....
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~~------ 255 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGL------ 255 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCcc------
Confidence 358999999999872 1 1111111111 24899999999999999999999999999999999995321
Q ss_pred ecccCCChHHHHHHHh--CCCeEE
Q 016622 353 YYPFGRGSGSQVVQQF--GIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~--g~pvl~ 374 (386)
...+.+.+.+ ++|++.
T Consensus 256 ------~N~~~l~~~~~~~~pv~~ 273 (817)
T PLN02974 256 ------SNEKALLSYLSNRVPVFV 273 (817)
T ss_pred ------chHHHHHHHHhcCCcEEe
Confidence 2334444432 888876
No 131
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.80 E-value=0.0003 Score=66.08 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+.+.++|||+...........+..+|.+++|+.+...--....+.++.+.+.+.+++ +++||.+......
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~~------ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGADF------ 133 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCH------
Confidence 467889999998643222222333556799999988866544566788888888888887 7889998643211
Q ss_pred CChHHHHHHHhCCC-eEEecCCC
Q 016622 358 RGSGSQVVQQFGIP-HLFDLPIR 379 (386)
Q Consensus 358 ~~~~~~i~~~~g~p-vl~~IP~d 379 (386)
....+++.+.++.. +...+|..
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHHHHhCCCceEEEeccc
Confidence 12467888888754 34456654
No 132
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.77 E-value=3.3e-05 Score=66.41 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=46.9
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
...+.+|.|| |-.|+||||+|..|...|.++|++|-++|.|.-+..+..-+|..
T Consensus 20 ~~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs 73 (197)
T COG0529 20 GQKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFS 73 (197)
T ss_pred CCCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCC
Confidence 3456799999 88999999999999999999999999999999888877666543
No 133
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.73 E-value=0.00024 Score=68.71 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=99.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEE-ec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV-SF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl-~~ 250 (386)
|++++.+.+...|+|||+++.+|++.|-++|.+|.++-.=. +. .+.+.. ...+.+.......+..= |.
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~--~~----~~~~~~-----~~~e~~~~~~~~~l~~~~~~ 69 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG--TR----TGKDAD-----DLTEEDIRATSSSLTYAEPL 69 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccc--cc----cCCccc-----hhHHHHHHHhhhhcccCccc
Confidence 67899999999999999999999999999999999985421 11 111100 00000000000000000 00
Q ss_pred CCCCCccccc---CCchHHHHHHHHHHhcCCCCCcEEEEcCC-CCC-----ChHHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 251 GFSGQGRAIM---RGPMVSGVINQLLTTTEWGELDYLVIDMP-PGT-----GDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 251 ~~~~~~~~~~---~~~~~~~~l~~ll~~~~~~~yD~VIIDtp-p~~-----~~~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
.. ....... ..+.+.+.+-.-.+.+. ...|++++..- |.. .+....++.... -.++++..+.......
T Consensus 70 ~~-~~ae~L~~~~~~d~l~e~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~~~ 146 (354)
T COG0857 70 VL-SFAEVLLSTGQDDVLLEEILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTPYE 146 (354)
T ss_pred ch-hhHHHHhccccchHHHHHHHHHHHHHh-ccCceEEeccceeccccCccccccHHHHhhcC-cchhhccccccCChhh
Confidence 00 0000011 11112222222222333 35566666542 111 111222222223 3456666666555444
Q ss_pred HHH----HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 322 VAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 322 ~~~----~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
... ....+...+..+.|||+|.+..... .+.+....++.+..+..+++.+|.++-++
T Consensus 147 ~~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~l~~~~ll~ 207 (354)
T COG0857 147 LKSRVELALAAFGAAGNNLAGVVINNAPVDEA-----GRTEDLLAEFLESSGIAVVGVLPPNRLLR 207 (354)
T ss_pred hhhHHHHHHHHhcccCCceEEEEecCCChhhh-----hhhhhHHHHHhhhccccccccCCHHHHhc
Confidence 443 3344444455899999996665443 23345678888888888999998776543
No 134
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.69 E-value=0.00037 Score=59.91 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=37.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|+++++|+ |.-|+||||+.-.|...|.++|+||.+|.-.-..
T Consensus 1 m~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 57899999 6669999999999999999999999999877655
No 135
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.63 E-value=0.00052 Score=61.25 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=48.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.++|||+-..-.......+..+|.+++|+.+...--....+.+..+.+.+.+.+-+++||.+..
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 567789999995322112223335567999999988765456677888888888887666888999863
No 136
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.63 E-value=0.00022 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+|+|+ |..|+||||++..|+..|..+|++|.+|+.|..+
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 36676 6679999999999999999999999999988543
No 137
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.58 E-value=0.00033 Score=63.85 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=34.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
|++|.|++. .|+||||++.+|+..|.++|+||.++..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 468999966 59999999999999999999999999754
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.57 E-value=0.00053 Score=59.86 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..++++++|+|+...........+..+|.+++|+.............+..+...+.+++ +|+|+++...
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~~~ 128 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDRVG 128 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCCcc
Confidence 36789999998533221222222446799999988776544455566666766666655 8889988643
No 139
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.52 E-value=0.00067 Score=61.28 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+...........+..+|.+++|+...........+.++.+...+.+++ +|+||++..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 46789999999643322223333556799999988755432334455555555566655 888999853
No 140
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.51 E-value=0.0017 Score=54.98 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCChHH--------HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..++++++|||+-..... ........+|.+++|+......-.......+.+...+.++ .+|+||++..
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhcc
Confidence 357899999986332110 1112244568888888877653334455556666656664 4888998854
No 141
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.46 E-value=0.00045 Score=59.53 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=36.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|++|+|++ ..|+||||++..|...|..+|++|..|..|..+
T Consensus 1 m~vi~i~G-~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVG-YSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 46889984 469999999999999999999999999987654
No 142
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.43 E-value=0.00026 Score=60.59 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=38.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~ 218 (386)
.+|.++ |..|+||||+|..|...|..+|.+|.++|.|..+..+.
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~ 46 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN 46 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC
Confidence 478888 99999999999999999999999999999998775553
No 143
>PRK00089 era GTPase Era; Reviewed
Probab=97.42 E-value=0.0029 Score=60.00 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChH--------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.++++++|||+-.... ......+..+|.+++|++....--......++.+...+.+++ +|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCC
Confidence 45789999998643211 111122446788999988766222344555666666566655 788998864
No 144
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.39 E-value=0.0015 Score=66.96 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+.+.++|||+...........+..+|.+++|+.+...--..+.+.++.++..+++++ +++|+++..... +
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~~a~--~---- 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRDGRE--P---- 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCcccccC--H----
Confidence 367889999998643212222333556799999988765434456777888888889866 778998854321 0
Q ss_pred CChHHHHHHHhCCCeE-EecCC
Q 016622 358 RGSGSQVVQQFGIPHL-FDLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl-~~IP~ 378 (386)
....+++.+.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 1236788888887643 24443
No 145
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.36 E-value=0.0009 Score=60.26 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
....+.|+|||+ ..+. ......+..+|.+++|+.....-.....+...+++..+.+.+-+|+||++..
T Consensus 75 ~~~~~~liDTpG-~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 75 PKRKFIIADTPG-HEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred CCceEEEEECCc-HHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 566889999985 3321 1122234567999999888765444455556666666766555789999864
No 146
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.34 E-value=0.00076 Score=66.60 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|++|+|++.| |+||||+..+|...|..+|+||.+|.-+-
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4699999655 99999999999999999999999987654
No 147
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.34 E-value=0.0036 Score=53.85 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred EEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCCcc
Q 016622 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (386)
Q Consensus 178 v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~~ 257 (386)
+..|.-|+||||+...+.... .|.++.++-.|........ .... . .+..++..+ .+.
T Consensus 4 ~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~------~~~~----------~--~~~~v~~l~---~GC 60 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDN------QLVV----------D--TDEEIIEMN---NGC 60 (158)
T ss_pred EEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhH------HHHh----------C--CCceEEEeC---CCE
Confidence 344888999999999888653 5889988877753322211 0000 0 011111100 011
Q ss_pred ccc-CCchHHHHHHHHHHhc--CCCCCcEEEEcCCCCCChHHHh--------hhhhcCCCeEEEEeCCCcchH--HHHHH
Q 016622 258 AIM-RGPMVSGVINQLLTTT--EWGELDYLVIDMPPGTGDIQLT--------LCQVVPLTAAVIVTTPQKLAF--IDVAK 324 (386)
Q Consensus 258 ~~~-~~~~~~~~l~~ll~~~--~~~~yD~VIIDtpp~~~~~~~~--------~~~~~~~d~vviV~~~~~~s~--~~~~~ 324 (386)
..- ....+...+.++++.+ ....+|+|+||+++........ .......|.++.++++..... .....
T Consensus 61 iCC~~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~ 140 (158)
T cd03112 61 ICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTE 140 (158)
T ss_pred eEeeCchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHH
Confidence 110 1123444554444332 1257999999998644322111 111223577888888654321 11223
Q ss_pred HHHHHHcCCCCeEEEEEcCCc
Q 016622 325 GVRMFSKLKVPCIAVVENMCH 345 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~ 345 (386)
..++++.... +|+||++
T Consensus 141 ~~~Qi~~ad~----ivlnk~d 157 (158)
T cd03112 141 AQSQIAFADR----ILLNKTD 157 (158)
T ss_pred HHHHHHHCCE----EEEeccc
Confidence 3344444432 7889875
No 148
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.34 E-value=0.00055 Score=61.53 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=34.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.|+ |.+|+|||+++..++...++.|.+|++||++-
T Consensus 13 ~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466666 89999999999999999999999999999984
No 149
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.32 E-value=0.0014 Score=57.81 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.+||||+-..........+..+|.+++|+.+...--....+.++.+...+++ +-+++|+++..
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence 678999999995322122223335567999999999876667788999999999999 55888999865
No 150
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.0017 Score=55.01 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=32.8
Q ss_pred EeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 179 ~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
..|+.|+||||++..++..++..|.+|++++.+....
T Consensus 4 i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 3488999999999999999999999999999986543
No 151
>PRK04296 thymidine kinase; Provisional
Probab=97.30 E-value=0.0073 Score=53.59 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
.++.++ |..|+||||.+..++..++.+|++|+++.
T Consensus 3 ~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345554 88899999999999999999999999994
No 152
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.29 E-value=0.00074 Score=56.91 Aligned_cols=43 Identities=30% Similarity=0.277 Sum_probs=33.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEE-EEEcCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGPSL 217 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVl-lID~D~~~~sl 217 (386)
++|+|++.| |+||||++..|...|.++|++|+ +.|.|..++.+
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~ 44 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEI 44 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTC
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCccc
Confidence 378999655 99999999999999999999999 88888744443
No 153
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.27 E-value=0.002 Score=66.16 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=56.2
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+.+.|+|||+...-.......+..+|.+++|+.+...-...+...++.++..+.+++ +++||++......
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pii-vviNKiD~~~~~~------ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIF-TFMNKLDRDIRDP------ 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccccCCCH------
Confidence 367889999999642211112233556799999998876434456677777777777755 7789998643211
Q ss_pred CChHHHHHHHhCCC
Q 016622 358 RGSGSQVVQQFGIP 371 (386)
Q Consensus 358 ~~~~~~i~~~~g~p 371 (386)
....+++.+.++..
T Consensus 150 ~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 150 LELLDEVENELKIN 163 (527)
T ss_pred HHHHHHHHHHhCCC
Confidence 12457777777754
No 154
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.26 E-value=0.0022 Score=54.95 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+++.++|||+..............+|.+++|+.+...........+..++..+.+++ +|+|+++..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceecc
Confidence 47899999998632221222222445789999988876444455556666777777754 788998854
No 155
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.26 E-value=0.0019 Score=56.22 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=36.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++++|+|+ |..|+||||+...|...|..+|+||..|.-+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45677887 7889999999999999999999999999876544
No 156
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.25 E-value=0.0013 Score=56.35 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCcEEEEcCCCCCC------hHHHhhhh--hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTG------DIQLTLCQ--VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~------~~~~~~~~--~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
....+.++|+|+-.+ +....... ....|.++.|+++... +.-..+...+.+.|.+++ +++||++.....
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVV-VVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEE-EEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEE-EEEeCHHHHHHc
Confidence 457899999997322 12221111 2357899999888764 444567777788899966 888998865422
Q ss_pred ceecccCCChHHHHHHHhCCCeEEecCC
Q 016622 351 KRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~pvl~~IP~ 378 (386)
... -..+.+.+.+|+|++...-.
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~sa~ 144 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVSAR 144 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEBTT
T ss_pred CCE-----ECHHHHHHHhCCCEEEEEeC
Confidence 211 24789999999998765543
No 157
>PRK12740 elongation factor G; Reviewed
Probab=97.22 E-value=0.0018 Score=68.66 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|..|++.++|||+...........+..+|.+++|+.+...........+..+...+.+++ +|+||++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 468999999999643211222233556799999999877555556667777777788866 688999865321 1
Q ss_pred CChHHHHHHHhCCCeE-EecCC
Q 016622 358 RGSGSQVVQQFGIPHL-FDLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl-~~IP~ 378 (386)
....+++.+.++.+.+ ..+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 1356778888887653 35554
No 158
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.22 E-value=0.00044 Score=62.12 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=60.5
Q ss_pred CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCCccccc
Q 016622 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIM 260 (386)
Q Consensus 181 ~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~ 260 (386)
|-+|+||||-...+...|...|.+|.+|.+||.+.+++.-++.+-. +.....+ +. +.+.+ ..++....
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~--elit~ed-vm----~~~~L-----GPNg~l~y 76 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIR--ELITVED-VM----EELGL-----GPNGALKY 76 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHH--HHccHHH-HH----HHhCC-----CCchhHHH
Confidence 8899999999999999999999999999999988777644332211 0000000 00 00111 11111111
Q ss_pred CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Q 016622 261 RGPMVSGVINQLLTTTEWGELDYLVIDMPPGT 292 (386)
Q Consensus 261 ~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~ 292 (386)
--+.+..-++.++..++.....|+|+|+|+..
T Consensus 77 c~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQV 108 (290)
T KOG1533|consen 77 CMEYLEANIDWLLEKLKPLTDHYVLFDCPGQV 108 (290)
T ss_pred HHHHHHhhhHHHHHHhhhccCcEEEEeCCCcE
Confidence 11223344555555555457889999999854
No 159
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.20 E-value=0.00071 Score=59.08 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+++|.|+ |-.|+||||++..|+..+...|.++.++|.|..+
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4578887 9999999999999999999889999999999644
No 160
>PRK00007 elongation factor G; Reviewed
Probab=97.18 E-value=0.0043 Score=66.10 Aligned_cols=94 Identities=21% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|.++.+.+||||+-..........+..+|.+++|+.+...--....+.+.++.+.+.+++ +++||.+..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~--~---- 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD--F---- 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC--H----
Confidence 467899999999533211112233556799999998766555667888889999999987 889999965422 1
Q ss_pred CChHHHHHHHhCCCe-EEecCC
Q 016622 358 RGSGSQVVQQFGIPH-LFDLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pv-l~~IP~ 378 (386)
....+++.+.++... ...||.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecC
Confidence 135677888887532 334554
No 161
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.17 E-value=0.0018 Score=69.16 Aligned_cols=70 Identities=14% Similarity=-0.024 Sum_probs=49.1
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
|.+|++.|+|||+-..-.......+..+|.+++|+.....-.......++.+.+.+.+++ +++||++...
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~ 152 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRLI 152 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhccc
Confidence 478999999999643212223344566899999998765434455677777767788877 8999998653
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0034 Score=53.46 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=33.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+++..|.|+ |.+|+||||++..+|-.|.+.|++|.-+=+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 356788888 999999999999999999999999975533
No 163
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.15 E-value=0.002 Score=55.37 Aligned_cols=33 Identities=39% Similarity=0.630 Sum_probs=28.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
.|-|+.+. |.||||.|..+|...+.+|+||+++
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566344 9999999999999999999999995
No 164
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0067 Score=57.10 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=108.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
.+++.+.++---+||=|++..|...+...|.++..+-.+..+-.+ ...|+-+ .
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~-----------------------~~~gvvv-d--- 200 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILI-----------------------ADDGVVV-D--- 200 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEE-----------------------ecCceEe-c---
Confidence 579999999999999999999999999999999888776533110 0011111 0
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH----HhhhhhcCCCeEEEEeCCCcchH---------
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAF--------- 319 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~----~~~~~~~~~d~vviV~~~~~~s~--------- 319 (386)
....+..+..++.+.-.+...++|||+|..-+++.+.. +.+..-.+.|.++++-.|+....
T Consensus 201 ------av~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~ 274 (339)
T COG3367 201 ------AVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPP 274 (339)
T ss_pred ------chhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCC
Confidence 01122234455554444432489999999987664322 22222335689999988876533
Q ss_pred -HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 016622 320 -IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTV 382 (386)
Q Consensus 320 -~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i 382 (386)
++...+...+. +.+++|+.+|--+.+.. +.+...+++...||+|+...+-+-+++
T Consensus 275 leevi~l~e~l~--~a~Vvgi~lNtr~~dE~------~are~~a~l~~efglP~~Dp~~~~~d~ 330 (339)
T COG3367 275 LEEVIALYELLS--NAKVVGIALNTRNLDEE------EARELCAKLEAEFGLPVTDPLRFGEDV 330 (339)
T ss_pred HHHHHHHHHHcc--CCcEEEEEecccccChH------HHHHHHHHHhhccCCccccccccchHH
Confidence 34444444443 47899999997554431 234567888888998888766655444
No 165
>PRK08233 hypothetical protein; Provisional
Probab=97.13 E-value=0.0021 Score=56.18 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+|+|+| .+|+||||+|..|+..|. +..++.+|.+..
T Consensus 4 ~iI~I~G-~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIAA-VSGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred eEEEEEC-CCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 5788885 559999999999999874 347777877643
No 166
>COG1159 Era GTPase [General function prediction only]
Probab=97.10 E-value=0.0086 Score=56.00 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=73.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
.+++. |++.+||||+.-+| .|.|+.++.--+|..-. . + .|+..
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR~-~-----------------I-----~GI~t------- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTRN-R-----------------I-----RGIVT------- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhhh-h-----------------e-----eEEEE-------
Confidence 67888 99999999996544 58999988655433110 0 0 01111
Q ss_pred CcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 016622 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
.+++.+|++|||+-... .......+..+|.+++|++.+..--..-...+
T Consensus 51 -----------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 51 -----------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred -----------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 16788999999963321 11111224457999999998885445667777
Q ss_pred HHHHcCCCCeEEEEEcCCcCCC
Q 016622 327 RMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
+.+++.+.+++ +++|+++...
T Consensus 108 ~~lk~~~~pvi-l~iNKID~~~ 128 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDKVK 128 (298)
T ss_pred HHHhhcCCCeE-EEEEccccCC
Confidence 88887666766 6779988543
No 167
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.07 E-value=0.0029 Score=53.75 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.+.++|||+.-............+|.+++|..............+..++..+.+.+-+|+|+++..
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 45688999985322111222224457999999887653233344444455555653455888998853
No 168
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.05 E-value=0.0091 Score=54.47 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCCcEEEEcCCCCCChHHH-hhhhhc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQL-TLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~-~~~~~~--~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+-+.+||||+ ..+... ....+. .+|.+++|+.++..-.....+.+.++...+.+++ +|+|+++..
T Consensus 82 ~~~~i~liDtpG-~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i-vvvNK~D~~ 151 (224)
T cd04165 82 SSKLVTFIDLAG-HERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVF-VVVTKIDLA 151 (224)
T ss_pred CCcEEEEEECCC-cHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 567899999995 332211 122222 4689999988776555677888889999999854 888999853
No 169
>PRK00049 elongation factor Tu; Reviewed
Probab=97.04 E-value=0.0055 Score=60.85 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.++++|||+ ..+. ......+..+|.+++|+.+...-.....+.+.++...+.+.+-+++||++..
T Consensus 73 ~~~~i~~iDtPG-~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 73 EKRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CCeEEEEEECCC-HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 456789999995 3221 1122334567999999988765456677888888888988776788999864
No 170
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.04 E-value=0.0063 Score=55.41 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=47.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..|.+.|+|||+-..-.......+..+|.+++|+..........+..++.+...+.+++ +++||++..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 46788999999644322233344566799999988776544556777777777778755 888999864
No 171
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.03 E-value=0.0027 Score=63.82 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCCCh-H-------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-I-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~-------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+++.|+|||+.... . ......+..+|.+++|+.....-...-....+++++.+.+++ +|+|+++..
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~~ 122 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDGP 122 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCc
Confidence 4577999999854320 0 011122445799999988765322223455667777777766 788999843
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.02 E-value=0.0051 Score=51.76 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChHH--------HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+++.|+|||+...... ........+|.+++|+.+............+++++.+.+++ +|+||++...
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~ 119 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDNIK 119 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECcccCC
Confidence 457899999996443211 11122345789999987754322223345666766676655 7889987543
No 173
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.01 E-value=0.0047 Score=58.32 Aligned_cols=164 Identities=17% Similarity=0.263 Sum_probs=96.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
..++|++.+.-.-+||=|++..|..+|.++|.++..+-....+-.. ...|+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimi-----------------------a~~Gv------ 161 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMI-----------------------AGYGV------ 161 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHC-----------------------HSEC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEE-----------------------ecCCe------
Confidence 5689999999999999999999999999999999888765433111 00010
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-----HHHhhhhhcCCCeEEEEeCCCcch--------
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQKLA-------- 318 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-----~~~~~~~~~~~d~vviV~~~~~~s-------- 318 (386)
. ............++.+...... +.|+|||..-+++.. ..+.+..-...|.+|+.-.|+...
T Consensus 162 -~---iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 162 -P---IDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred -e---ccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 0 0012334556677777777653 669999999887642 133333344579999998884432
Q ss_pred HHHHHHHHHHHHcC-----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEe
Q 016622 319 FIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (386)
Q Consensus 319 ~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~ 375 (386)
+..+.+.++..+.+ ..+++|+-+|-.....+. .+...+++.+++|+|+.-.
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e------~~~~~~~~~~e~glPv~Dp 292 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEE------AKAAIERIEEELGLPVTDP 292 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHH------HHHHHHHHHHHH-S-EE-H
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHH------HHHHHHHHHHHHCCCeeec
Confidence 33455555555544 234899999976544221 1245889999999988653
No 174
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.00 E-value=0.0013 Score=60.61 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=33.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH------------CCCcEEEEEcCCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYGP 215 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~------------~G~rVllID~D~~~~ 215 (386)
.+++..+.+|+||||++..+|..+|. .+.+|++++++-...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~ 54 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE 54 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence 35666799999999999999998873 457899999876443
No 175
>PRK12739 elongation factor G; Reviewed
Probab=96.99 E-value=0.007 Score=64.46 Aligned_cols=94 Identities=22% Similarity=0.140 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+.+.+.++|||+-..........+..+|.+++|+.....--...++.+..+.+.+.+++ +++||.+..... .
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~--~---- 142 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD--F---- 142 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--H----
Confidence 467889999999532211122233445799999998866544556778888888899987 888999865422 1
Q ss_pred CChHHHHHHHhCCC-eEEecCC
Q 016622 358 RGSGSQVVQQFGIP-HLFDLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~p-vl~~IP~ 378 (386)
....+++.+.++.. +...+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 143 FRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHhCCCceeEEecc
Confidence 13567777777653 2345564
No 176
>COG2403 Predicted GTPase [General function prediction only]
Probab=96.98 E-value=0.0044 Score=59.35 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=35.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.+|+|++...|+|||+++..+|+.|.++|+||++|-.
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred ceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 5999999999999999999999999999999999966
No 177
>PLN03127 Elongation factor Tu; Provisional
Probab=96.97 E-value=0.011 Score=59.47 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.++++|||+-..-.......+..+|.+++|+.+...-....++.+..+...+++.+-+++||++..
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 456789999995322222222334457999999998765456678888889889998766788999864
No 178
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.95 E-value=0.0031 Score=61.96 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=37.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+++|.|+ +..|+||||+...|...|.++|++|.+|.-|-.+
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 57799999 7789999999999999999999999999987654
No 179
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.95 E-value=0.0025 Score=55.87 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=73.2
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCCc
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 256 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~ 256 (386)
.+.+|-=|+||||+-.+|.. ....|.|+.+|-.|...-... ..+.. ..+..+..... +
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD------~~~l~------------~~~~~v~~l~~---g 60 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNID------AELLQ------------EDGVPVVELNN---G 60 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHH------HHHHH------------TTT-EEEEECT---T
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccc------hhhhc------------ccceEEEEecC---C
Confidence 44558889999999999998 667899999998887542221 11110 01222222111 1
Q ss_pred cccc-CCchHHHHHHHHHHhcCCC--CCcEEEEcCCCCCChHHH-----hhhhhcCCCeEEEEeCCCcch-HHHH-HHHH
Q 016622 257 RAIM-RGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQL-----TLCQVVPLTAAVIVTTPQKLA-FIDV-AKGV 326 (386)
Q Consensus 257 ~~~~-~~~~~~~~l~~ll~~~~~~--~yD~VIIDtpp~~~~~~~-----~~~~~~~~d~vviV~~~~~~s-~~~~-~~~~ 326 (386)
...- ....+...+.++. ... .+|+|||.+.+......+ ........+.++.|+.+.... .... ....
T Consensus 61 cicc~~~~~~~~~l~~l~---~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~ 137 (178)
T PF02492_consen 61 CICCTLRDDLVEALRRLL---REYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR 137 (178)
T ss_dssp TESS-TTS-HHHHHHHHC---CCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH
T ss_pred CcccccHHHHHHHHHHHH---HhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh
Confidence 1110 1122334454444 223 579999999863332222 111123457788888875531 2222 2223
Q ss_pred HHHHcCCCCeEEEEEcCCcCC
Q 016622 327 RMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~ 347 (386)
++++..+ -+|+|+++..
T Consensus 138 ~Qi~~AD----vIvlnK~D~~ 154 (178)
T PF02492_consen 138 EQIAFAD----VIVLNKIDLV 154 (178)
T ss_dssp HHHCT-S----EEEEE-GGGH
T ss_pred hcchhcC----EEEEeccccC
Confidence 4444443 3899998754
No 180
>PRK07667 uridine kinase; Provisional
Probab=96.94 E-value=0.0019 Score=57.44 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+|+|. |-+|+||||+|..|+..|.+.|.+|.+++.|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 477777 999999999999999999999999999999964
No 181
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.94 E-value=0.0017 Score=58.79 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=33.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+....+.+|+||||++.++|..++.+|.+|+++|++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 444444899999999999999999999999999998753
No 182
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00072 Score=65.63 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=32.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
-+...+|-+|.||||+-..+|..+|+++ +||+|-..-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 4455569999999999999999999998 999997764
No 183
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.91 E-value=0.0028 Score=58.10 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.++ +..|+|||+++.++++..+++|.+|++++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 456666 89999999999999999888999999999974
No 184
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.90 E-value=0.011 Score=51.34 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
..+.+.|+|||+...........+..+|.+++|...... +.... ..+..+...+.++ -+|+||++..... .
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~i-iiv~NK~Dl~~~~--~---- 136 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLEI-IPVINKIDLPSAD--P---- 136 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCCE-EEEEECCCCCcCC--H----
Confidence 567889999985332222222234567999999887653 22222 2233334456664 4788999863211 0
Q ss_pred CChHHHHHHHhCCC
Q 016622 358 RGSGSQVVQQFGIP 371 (386)
Q Consensus 358 ~~~~~~i~~~~g~p 371 (386)
....+++++.++++
T Consensus 137 ~~~~~~~~~~~~~~ 150 (179)
T cd01890 137 ERVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHHhCCC
Confidence 11245667777764
No 185
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.90 E-value=0.023 Score=51.81 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=100.0
Q ss_pred EEEEeC-cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--ccccCCC-C-----------------
Q 016622 176 VAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNPE-K----------------- 234 (386)
Q Consensus 176 I~v~s~-kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~~~~~~~-~----------------- 234 (386)
|.|+++ -.|.||=.+|+.++..|..+|++|..+.+||+-+--+..+.+-.. ....++. +
T Consensus 3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~ 82 (255)
T cd03113 3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLS 82 (255)
T ss_pred EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCc
Confidence 444433 468899999999999999999999999999976433322221110 0000000 0
Q ss_pred --C---------ceeeeccCC------ceEEecCCCCCcccccCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCCChHH
Q 016622 235 --R---------TIIPTEYLG------VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQ 296 (386)
Q Consensus 235 --~---------~i~~~~~~~------l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~ 296 (386)
. .+...+..| +.++ |.....+++.+..+. ...+|++|+..++..+|..
T Consensus 83 ~~~niTtGkiy~~vi~kER~G~ylG~TVQvi--------------PHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiE 148 (255)
T cd03113 83 RDNNITTGKIYSSVIEKERRGDYLGKTVQVI--------------PHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIE 148 (255)
T ss_pred CccCcChHHHHHHHHHHhhccCccCceEEEC--------------cCccHHHHHHHHHhhccCCCCEEEEEeCCcccccc
Confidence 0 000001000 1122 222233444333332 2689999999998777521
Q ss_pred H-----hhhhhc---CCCeE------EEE--eCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCCh
Q 016622 297 L-----TLCQVV---PLTAA------VIV--TTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGS 360 (386)
Q Consensus 297 ~-----~~~~~~---~~d~v------viV--~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~ 360 (386)
- ++.++. ..+.+ +++ -..+...-.-++..++.|++.|+...++|+|.-+. .....
T Consensus 149 s~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~p---------L~e~~ 219 (255)
T cd03113 149 SLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKP---------LPPEI 219 (255)
T ss_pred ccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCC---------CchHH
Confidence 1 111111 11211 222 11233444567888999999999999999997221 11245
Q ss_pred HHHHHHHhCCCeEEecCC
Q 016622 361 GSQVVQQFGIPHLFDLPI 378 (386)
Q Consensus 361 ~~~i~~~~g~pvl~~IP~ 378 (386)
.+.++.-.++|+.+.+|.
T Consensus 220 keKIAlFcnVpve~VI~~ 237 (255)
T cd03113 220 REKIALFCDVPPEAVISA 237 (255)
T ss_pred HHHHHHhcCCCHHHeeec
Confidence 567777778887766654
No 186
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.89 E-value=0.0089 Score=58.99 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=45.1
Q ss_pred CCCCcEEEEcCCCCCC-h--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 278 WGELDYLVIDMPPGTG-D--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~-~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
|..+.+.+|||++-.. + ...+..++..+|.+++|+.....--.+=..+.++|++.+.+++ +|+|+++...
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~~ 126 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNLK 126 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCch
Confidence 4677799999985331 1 0112233456899999988776333344556677776667766 6779999753
No 187
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.86 E-value=0.0042 Score=55.06 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.|+|||+...-.......+..+|.+++|+.............+..+...+.+++ +|+||++..
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 56788999998532211222222445799999988766443444555566656677754 788999864
No 188
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.86 E-value=0.018 Score=54.05 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCCh-HH-------HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-IQ-------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~~-------~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.++++|||+-... .. .....+..+|.+++|++++.....+ ....+.+...+.+++ +|+|+++..
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl~ 120 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDNK 120 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeCC
Confidence 3456899999863221 00 0112244678999998876643333 555666777777765 788998853
No 189
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.003 Score=53.01 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=46.8
Q ss_pred cccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCC
Q 016622 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 223 (386)
Q Consensus 168 ~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~ 223 (386)
.++..+-+|.++ +-.|+||||+|..|.++|-++|+-.-.+|.|--+..+..-+|.
T Consensus 26 l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F 80 (207)
T KOG0635|consen 26 LLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF 80 (207)
T ss_pred HhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCc
Confidence 455566799999 8889999999999999999999999999999877776655543
No 190
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.80 E-value=0.0025 Score=56.91 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.4
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
..+.+|+|+ |..|+||||++..|+..|...|..++++|.|...
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345688888 8889999999999999999889999999998755
No 191
>PRK10218 GTP-binding protein; Provisional
Probab=96.79 E-value=0.018 Score=60.05 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=49.2
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
|+.+.+.|+|||+-..........+..+|.+++|+..........+..+..+...+++.+ +++||++...
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~ 134 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPG 134 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCC
Confidence 367889999998533221222233556799999998876555566777777778899876 7889998643
No 192
>PRK13351 elongation factor G; Reviewed
Probab=96.77 E-value=0.014 Score=62.21 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|..+.+.++|||+-..........+..+|.+++|+......-......++.+...+.+++ +++|+++......
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~~------ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGADL------ 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCCH------
Confidence 367889999998543212222333456799999988776544556677777888888876 7889998653211
Q ss_pred CChHHHHHHHhCCCeEE-ecCC
Q 016622 358 RGSGSQVVQQFGIPHLF-DLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl~-~IP~ 378 (386)
....+++.+.++.+... .+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 13567888888876442 4553
No 193
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.76 E-value=0.015 Score=62.02 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|+++.+.++|||+-..........+..+|.+++|+.....--......++.+.+.+.+++ +++||++..... .
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~--~---- 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN--F---- 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC--H----
Confidence 467889999999643221222233455799999988766434455677778888888876 788999865421 1
Q ss_pred CChHHHHHHHhCCCe-EEecCC
Q 016622 358 RGSGSQVVQQFGIPH-LFDLPI 378 (386)
Q Consensus 358 ~~~~~~i~~~~g~pv-l~~IP~ 378 (386)
....+++.+.++... ...||.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipi 166 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPI 166 (689)
T ss_pred HHHHHHHHHHhCCCceeEEecc
Confidence 134677777776432 335554
No 194
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.76 E-value=0.003 Score=57.45 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.++.|+ |.+|+|||+++.++|..+++.|.+|++||++
T Consensus 24 ~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555 8999999999999999999999999999998
No 195
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.76 E-value=0.008 Score=52.28 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=29.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|-+. +..|.||||.|..+|..++.+|++|+++=+
T Consensus 7 li~v~-~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVH-TGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 44455 338999999999999999999999998844
No 196
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.75 E-value=0.0028 Score=60.72 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++.|+ +..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 456666 78999999999999999999999999998863
No 197
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.73 E-value=0.0068 Score=53.53 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=30.9
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|.|+ +..|-||||.|..+|...+.+|.+|+++=+
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 55566 678999999999999999999999999965
No 198
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.72 E-value=0.008 Score=53.17 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=39.3
Q ss_pred CCCcEEEEcCCCCCChHHH-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.++|||+ ...... .......+|.+++|+......-....+.+......+.+++ +|+||++..
T Consensus 66 ~~~~~~i~DtpG-~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPG-HASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCC-cHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 578999999985 332111 1122334689999988765322222233334444566655 788998864
No 199
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.71 E-value=0.0067 Score=55.01 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=27.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.++.+.|+ |++|+||||+|.+|+ .++++++.|-.
T Consensus 11 ~~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CCcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 34567777 999999999988773 47999999963
No 200
>PRK15453 phosphoribulokinase; Provisional
Probab=96.71 E-value=0.0033 Score=58.82 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=37.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
...+|+|+ |..|+||||++..|+..|...|.++.+++.|.+..
T Consensus 4 k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 34689998 88899999999999999988888999999998764
No 201
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.69 E-value=0.031 Score=46.63 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~---~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+++.++|+|+...........+..+|.+++|..+.. .+...+...+..+.... .+ +-+|.|+++......
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~--- 122 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQ--- 122 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEccccccccc---
Confidence 45788999998643322223333456799998888755 45667777676665543 44 458889988641111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......++.+..+.+++.
T Consensus 123 -~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd00154 123 -VSTEEAQQFAKENGLLFFE 141 (159)
T ss_pred -ccHHHHHHHHHHcCCeEEE
Confidence 1123455566655666554
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.68 E-value=0.012 Score=61.33 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=49.5
Q ss_pred CCCCcEEEEcCCCCCChHH-HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
|..+.+-|||||+ ..+.. .....+..+|.+++|+.+.......+...++.+.+.+++++ +++||++..
T Consensus 61 ~~~~kinlIDTPG-h~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~~ 129 (594)
T TIGR01394 61 YNGTKINIVDTPG-HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRP 129 (594)
T ss_pred ECCEEEEEEECCC-HHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCCC
Confidence 4678899999985 43321 22223455799999998876556677788888888899875 788999964
No 203
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.67 E-value=0.0052 Score=56.29 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.++.++ |..|+||||++.+++..++++|.++++++++...
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT 64 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 366666 9999999999999999999999999999987643
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=96.66 E-value=0.014 Score=57.97 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.++|||+ ..+. ......+..+|.+++|+.....-.....+.+.++...+++.+-+++|+.+..
T Consensus 73 ~~~~i~~iDtPG-h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 73 EKRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred CCcEEEEEECCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 466889999995 3221 1222334457999999988765455667788888888988777889999864
No 205
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.65 E-value=0.0067 Score=63.27 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++++|+|+ +..|+||||+...|...|.++|+||..|.-|-.+
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 46799999 6689999999999999999999999999986543
No 206
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0052 Score=50.09 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=33.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
..+.+. |..|+||||++..+|..+...++.+++++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 366676 7799999999999999998877789999887654
No 207
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.59 E-value=0.0047 Score=61.52 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.++.+.|+|||+ ..+. ......+..+|.+++|+.+...-.....+.+..+...+.+.+-+++|+++..
T Consensus 78 ~~~~~~liDtPG-h~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 78 DKRKFIVADTPG-HEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred CCeEEEEEeCCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 567899999995 3221 1222335567999999988765445566667777777777666899999864
No 208
>PRK12735 elongation factor Tu; Reviewed
Probab=96.58 E-value=0.018 Score=57.11 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+...++++|||+ ..+. ......+..+|.+++|+.+...-.....+.+..+...+++.+-+++|+++..
T Consensus 73 ~~~~i~~iDtPG-h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 73 ANRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CCcEEEEEECCC-HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 456789999995 3221 1222334467999999888764445667778888888888776788999864
No 209
>PRK06696 uridine kinase; Validated
Probab=96.57 E-value=0.0045 Score=56.37 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+|+|. |.+|+||||+|..|+..|...|.+|+.+-+|-..
T Consensus 23 ~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 467776 8999999999999999999889999997777554
No 210
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.56 E-value=0.021 Score=56.70 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+. ......+..+|.+++|+.....-.....+.+..+...+++.+-+++||++..
T Consensus 73 ~~~~~~liDtpG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 73 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred CCEEEEEEECCc-hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 456789999995 3221 1222334456999999888765455677888888888888776789999854
No 211
>PRK05973 replicative DNA helicase; Provisional
Probab=96.55 E-value=0.0038 Score=57.25 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+.+.++.+|+|||+++.++|...+++|++|+++.++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE 104 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH
Confidence 4556669999999999999999999999999999998643
No 212
>PRK06762 hypothetical protein; Provisional
Probab=96.54 E-value=0.0036 Score=54.05 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=31.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|+++|.++ |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 45677776 999999999999999888 4568888877644
No 213
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.54 E-value=0.0063 Score=61.33 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~-------~~~~~~~~~l~~~~~~i~gvVlN~~~~ 346 (386)
+..+.+.|||||+-..-.......+..+|.+++|+.+...-. ..+++.+..+..+|++.+-+++|+.+.
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 367899999999522222222333556799999988876432 467888888999999988889999984
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.54 E-value=0.0038 Score=54.75 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 178 v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+..|.+|+|||+++.+++...++.|.+|+++.++...
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 4459999999999999999999999999999987643
No 215
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.53 E-value=0.0037 Score=54.93 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.7
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|+|. |..|+||||+|..|+..+...|.++.+|..|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5565 8999999999999999999999999999998654
No 216
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.53 E-value=0.053 Score=45.86 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|.... ..++.........+.. .+.+ +-+|.|+++.......
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~- 123 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQV- 123 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccccc-
Confidence 3567899999874332222223344567777776543 3445555555554443 2455 4588899986431110
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+.+.++.+++.
T Consensus 124 ---~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04139 124 ---SSEEAANLARQWGVPYVE 141 (164)
T ss_pred ---CHHHHHHHHHHhCCeEEE
Confidence 112345666777766653
No 217
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.52 E-value=0.046 Score=46.28 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.++|+|+...........+..+|.+++|..... .+...+.+.+..+... +.+ +-+|.|+++..... .
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~----~ 122 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQR----Q 122 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhccccc----C
Confidence 4578899998643222222333456799888887755 3566665555555432 344 45888998854311 1
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......+.+.+.++.+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~e 141 (164)
T smart00175 123 VSREEAEAFAEEHGLPFFE 141 (164)
T ss_pred CCHHHHHHHHHHcCCeEEE
Confidence 1113455667777876543
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.52 E-value=0.0067 Score=55.03 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-------hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-------AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-------s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.++|||+...........+..+|.+++|+..... ....+.+.+..+...+.+.+-+++||.+..
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 678899999985322122222234457999999887653 112344555556666766566789999865
No 219
>CHL00071 tufA elongation factor Tu
Probab=96.50 E-value=0.02 Score=57.14 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.++++|||+ ..+. ......+..+|.+++|+.+...-.....+.+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~~~~iDtPG-h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 73 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 566789999995 3321 1122334457999999988765556677888888888998676889999864
No 220
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.49 E-value=0.0081 Score=54.53 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCC------CcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G------~rVllID~D~ 212 (386)
+++.|+ |..|+|||+++.++|...+..| .+|++||.+-
T Consensus 20 ~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 466666 8999999999999999988777 8999999974
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.0042 Score=57.31 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.5
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.+..|++|+|||+++.++|..|.++|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 3445999999999999999999999999999965
No 222
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.0055 Score=62.48 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=35.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+.+.+|-.|+||||++.+++...+++|.+|+++-.+-..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR 303 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH
Confidence 5555669999999999999999999999999999988643
No 223
>PF13479 AAA_24: AAA domain
Probab=96.44 E-value=0.013 Score=52.95 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.++|+ |..|+||||++..+ .++++||+|-..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 56676 99999999998776 699999999643
No 224
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.44 E-value=0.064 Score=46.45 Aligned_cols=91 Identities=11% Similarity=0.166 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+-|+|+|+...........+..+|.+++|.... ..++.++...+..+... +.+ +.+|.|+++......
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-- 137 (180)
T cd04127 61 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQ-- 137 (180)
T ss_pred CEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCc--
Confidence 3567889999863221122222244678888887765 35566666665555442 334 558899988643211
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......++++.++++++.
T Consensus 138 --v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 138 --VSEEQAKALADKYGIPYFE 156 (180)
T ss_pred --cCHHHHHHHHHHcCCeEEE
Confidence 1123467788888877653
No 225
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.42 E-value=0.0053 Score=57.05 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=36.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
+|+|+ |..|+||||++..|+..|.+.|.+|.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47786 78899999999999999999999999999998775
No 226
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.40 E-value=0.051 Score=48.33 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCeEEEEEcCCcCCCCCceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
.+.+.|+|+|+......+....+..+|.+++|.... ..++..+...+..+... ..+ +-+|.|+++.......
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~---- 128 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVV---- 128 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccccc----
Confidence 356789999864322222222244578888887764 45666666666666543 234 4588899886432111
Q ss_pred CCChHHHHHHHhCCCeE
Q 016622 357 GRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl 373 (386)
.......+++.++.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 129 ETEDAYKFAGQMGISLF 145 (199)
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 11234556666676654
No 227
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.39 E-value=0.075 Score=45.35 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+-|+|+|+..............+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~--- 125 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVV--- 125 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCC---
Confidence 4567899998643222222222445788898877643 4556666655555443 344 4478899885432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++.++++++.
T Consensus 126 -~~~~~~~~~~~~~~~~~~ 143 (166)
T cd01869 126 -DYSEAQEFADELGIPFLE 143 (166)
T ss_pred -CHHHHHHHHHHcCCeEEE
Confidence 113456677777876643
No 228
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.39 E-value=0.025 Score=46.99 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCCCChH-------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~-------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
.++++++|+|+..... .........+|.+++|+.+..............+...+.+++ +|+|+++...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEccccCC
Confidence 6789999999633210 122223445788898888877654444444555555667755 8889988543
No 229
>PHA02542 41 41 helicase; Provisional
Probab=96.37 E-value=0.0053 Score=62.17 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
-+.+.++.+|+||||++.|+|..+++.|++|++++++.....+
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 5667779999999999999999999999999999999865443
No 230
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.37 E-value=0.048 Score=46.85 Aligned_cols=89 Identities=11% Similarity=0.189 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
...+.|+|+|+.-............+|.+++|.... ..++..+...+..+++. +.+ +-+|.|+.+......
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~---- 126 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE---- 126 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccC----
Confidence 346889999864322222222244578888888865 45666666666655443 344 458889988643211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
......+.+++..+.+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 127 VSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred CCHHHHHHHHHHcCCEEE
Confidence 111335566666676654
No 231
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.36 E-value=0.005 Score=52.37 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=33.0
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|.|+ |..|+||||++..|+..+...|.++.++|.|..+
T Consensus 2 i~i~-G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLT-GLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 4444 9999999999999999999889999999988655
No 232
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.33 E-value=0.073 Score=51.74 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.9
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
|.+.+|-=|+||||+--.|... ..|.|+.+|-.|...-++
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~I 45 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGI 45 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccc
Confidence 4555588899999999988764 468999999888755433
No 233
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.32 E-value=0.065 Score=45.68 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
..+.+.++|+|+...........+..+|.+++|+..... ++......+..+.+ .+.+++ +|+||++..
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D~~ 120 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL-ILANKQDLP 120 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE-EEEEccccc
Confidence 457889999985322122222224567888988876543 34444444433322 356644 888999853
No 234
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.32 E-value=0.097 Score=45.36 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.|.+.|+|+|+..............++.++++...+ ..++..+....+.+.+ .+.+++ +|.||++.......
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~-- 124 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV-LVGNKSDLHTQRQV-- 124 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEchhhhhcCcc--
Confidence 567899999864221112112233457777665544 3455666555544432 245544 88899986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+.+.++.+++.
T Consensus 125 --~~~~~~~~~~~~~~~~~~ 142 (180)
T cd04137 125 --STEEGKELAESWGAAFLE 142 (180)
T ss_pred --CHHHHHHHHHHcCCeEEE
Confidence 112345566777766543
No 235
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.31 E-value=0.1 Score=44.15 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+......+.+ .+.++ -+|.||++.......
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl~~~~~~-- 125 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADLEHQRKV-- 125 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCcccccccee--
Confidence 3567789998643322222222445788888876544 344555554444432 24554 477899986432111
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
......++.+.++.+++
T Consensus 126 --~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 126 --SREEGQELARKLKIPYI 142 (164)
T ss_pred --cHHHHHHHHHHcCCcEE
Confidence 11234566666777664
No 236
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.31 E-value=0.0059 Score=59.91 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=32.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+.++.+|+||||++..+|..+++.|.+|++++...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 34445599999999999999999999999999998864
No 237
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.31 E-value=0.0088 Score=53.76 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=33.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
...+|+|+ |..|+||||++..|+..+ .+.++.+++.|...
T Consensus 5 ~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 34578877 899999999999999988 45689999998754
No 238
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.30 E-value=0.035 Score=44.61 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCCh---------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcC
Q 016622 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~ 343 (386)
....++|+|||+-... .......+..+|.+++|+..+...-.....+++.++ .+.+ +-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 3456789999964321 011223344579999999977733345667777786 4444 5578786
No 239
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.28 E-value=0.066 Score=45.39 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+...........+..+|.+++|..+. ..++..+...+..+.+.. ...+-++.|+.+.......
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--- 124 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV--- 124 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC---
Confidence 3556889999864322222222244578899888765 345677777666665543 1224578899885432111
Q ss_pred cCCChHHHHHHHhCCCe
Q 016622 356 FGRGSGSQVVQQFGIPH 372 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pv 372 (386)
.......+.+..+.++
T Consensus 125 -~~~~~~~~~~~~~~~~ 140 (163)
T cd01860 125 -STEEAQEYADENGLLF 140 (163)
T ss_pred -CHHHHHHHHHHcCCEE
Confidence 1124556666666543
No 240
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.27 E-value=0.011 Score=59.11 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCCh-----H---HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGD-----I---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-----~---~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
....+.|+|||+-..+ . ......+..+|.+++|+.+...-........+++++.+.+++ +|+|+++...
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~~ 121 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGKK 121 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCCc
Confidence 4456899999853211 0 111222445799999988765333334566777777777766 6789998643
No 241
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.27 E-value=0.021 Score=54.98 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=34.2
Q ss_pred eEEEEEe-CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s-~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+|+|-| +.||+|||+++..|+..|.++|++|.++-=...
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 4888844 469999999999999999999999999965543
No 242
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0058 Score=49.53 Aligned_cols=32 Identities=41% Similarity=0.459 Sum_probs=24.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+|+|+ |..|+||||+|..||..+ |..++-+|-
T Consensus 1 vI~I~-G~~gsGKST~a~~La~~~---~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIIS-GPPGSGKSTLAKELAERL---GFPVISMDD 32 (121)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---TCEEEEEHH
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH---CCeEEEecc
Confidence 35555 999999999999999877 666654443
No 243
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.27 E-value=0.0037 Score=56.92 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=32.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~ 214 (386)
.++.+. |..|+|||+++.+++...+++ |.+|++|.++...
T Consensus 20 s~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 20 SVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred cEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 355555 999999999999999999988 9999999987643
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=96.26 E-value=0.027 Score=57.21 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.+||+|+ ..+. ......+..+|.+++|+.+...-....++.+..+...+++.+-+++||.+..
T Consensus 142 ~~~~i~liDtPG-h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 142 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CCcEEEEEECCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 466789999995 3221 1222334457999999987765556677888888888998777889999864
No 245
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.26 E-value=0.075 Score=44.98 Aligned_cols=91 Identities=9% Similarity=0.101 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc--CCCCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~--~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+++.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++.......
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~v--- 124 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV-LVQTKIDLLDQAVI--- 124 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhcccccCC---
Confidence 45789999998643222222223446788888876543 355555555544443 256654 88899886432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++.++.+++.
T Consensus 125 -~~~~~~~~~~~~~~~~~~ 142 (162)
T cd04106 125 -TNEEAEALAKRLQLPLFR 142 (162)
T ss_pred -CHHHHHHHHHHcCCeEEE
Confidence 113456677788877653
No 246
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.24 E-value=0.034 Score=49.73 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=41.1
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+-+.|+|||+...-.......+..+|.+++|+..... ........+..+...+.+.+-+|+||.+..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 6789999986322112222334456999999887752 122334455556656665455899998864
No 247
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.23 E-value=0.071 Score=57.32 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCCCCCh----------HHHh--hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGD----------IQLT--LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~----------~~~~--~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~ 346 (386)
..+++.++|+|+..+- .... ......+|.+++|++++.. +........+.+.+.+++ +++||+|.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvI-vVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCI-VALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEE-EEEEchhh
Confidence 5678999999963321 1111 1111257899999887653 333345556677788865 78899986
Q ss_pred CCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 347 DADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...... ....+++++.+|+|++.
T Consensus 125 ~~~~~i-----~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 125 AEKQNI-----RIDIDALSARLGCPVIP 147 (772)
T ss_pred hhccCc-----HHHHHHHHHHhCCCEEE
Confidence 432111 13467788889988764
No 248
>PRK15494 era GTPase Era; Provisional
Probab=96.22 E-value=0.06 Score=52.33 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCCh---H--HH---hhhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD---I--QL---TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~---~--~~---~~~~~~~~d~vviV~~~~~~s~~~~-~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+++.++++|||+.... . .+ ....+..+|.+++|++... ++... ...++.++..+.+.+ +|+|+++..
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl~ 173 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDIE 173 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcCc
Confidence 4557899999864221 0 00 0112446789998887654 22222 345666666666665 688999853
No 249
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.19 E-value=0.06 Score=49.07 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
...+.++|||+.. .........+|.+++|+.....-......+++.+...+.+.+-+|+|+.+.-
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 4457899998543 1122224456889999887654434456777888777887655688998853
No 250
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.17 E-value=0.14 Score=43.62 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+......+.-.....+|.+++|...+ ..++..+......+.+ .+.++ -+|.||++.......
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~- 124 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDLEDERVV- 124 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCcchhccEE-
Confidence 3566779999864322222222244568888876654 3455666555554432 24554 488999886432111
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+.+++.++.+++.
T Consensus 125 ---~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04175 125 ---GKEQGQNLARQWGCAFLE 142 (164)
T ss_pred ---cHHHHHHHHHHhCCEEEE
Confidence 112356777788877653
No 251
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.17 E-value=0.031 Score=48.75 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=29.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|-|+ .-.|=||||-|..+|...+-+|+||+++=+
T Consensus 23 li~VY-tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 23 LVQVF-TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred EEEEE-eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 44444 456999999999999999999999999965
No 252
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.16 E-value=0.01 Score=52.63 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=36.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
+.-.++-|-.|+||||...++-...-..|+++-+|.+||..-..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f 46 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHF 46 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhh
Confidence 34344448889999999999999999999999999999966443
No 253
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.16 E-value=0.1 Score=44.76 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|... +..++..+.+.+..+.+. +.+ +-+|.|+.+.......
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~--- 126 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV--- 126 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---
Confidence 46788999986433222222334567888888765 345666666666655543 344 4488899886432111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......+++.++.+++
T Consensus 127 -~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 127 -SKEEGEALADEYGIKFL 143 (167)
T ss_pred -CHHHHHHHHHHcCCEEE
Confidence 11235566677776653
No 254
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.16 E-value=0.033 Score=53.37 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=54.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC-CCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-SLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~-sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
++++-|++ ..|+||||++..+...+.+.|..+++||+.-.-. .....+|.+. +.+-+..+.
T Consensus 53 G~ivEi~G-~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl-----------------~rllv~~P~ 114 (322)
T PF00154_consen 53 GRIVEIYG-PESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDL-----------------DRLLVVQPD 114 (322)
T ss_dssp TSEEEEEE-STTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--G-----------------GGEEEEE-S
T ss_pred CceEEEeC-CCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccc-----------------cceEEecCC
Confidence 47888885 5789999999999999988999999999864211 0111123221 123222211
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG 293 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~ 293 (386)
.++...+.++++++. +.+|+||||.-+.+.
T Consensus 115 ---------~~E~al~~~e~lirs---g~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 115 ---------TGEQALWIAEQLIRS---GAVDLVVVDSVAALV 144 (322)
T ss_dssp ---------SHHHHHHHHHHHHHT---TSESEEEEE-CTT-B
T ss_pred ---------cHHHHHHHHHHHhhc---ccccEEEEecCcccC
Confidence 122344566777653 788999999987664
No 255
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.16 E-value=0.017 Score=51.64 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeee-ccCCceEEecCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-EYLGVKLVSFGFS 253 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~-~~~~l~vl~~~~~ 253 (386)
.+.+.=|-.|+|||-++..+++.+-+.|++|.++-....- ..+ +..+......+.+. -...+.++|....
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~---ref------i~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV---REF------IKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH---HHH------HHHHHhcCCCchHHHhcceeEEEEeccc
Confidence 3444448999999999999999999999999999765311 111 11111111111111 1235666664322
Q ss_pred CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCC
Q 016622 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP 290 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp 290 (386)
...|........++.+++..+..++|+||||+=.
T Consensus 100 ---~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls 133 (235)
T COG2874 100 ---PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLS 133 (235)
T ss_pred ---ccccChHHHHHHHHHHHhhHHhhcCCEEEEeccc
Confidence 2334555556677777777766789999999843
No 256
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.15 E-value=0.11 Score=44.76 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~ 348 (386)
+.+.+.|+|+|+......+.......+|.+++|...... ++..+...+..+.+. +.+ +-+|.||.+...
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~ 114 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKN 114 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcC
Confidence 467889999986432222222234567999999887653 566666655555332 445 448889988543
No 257
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.14 E-value=0.16 Score=44.52 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
+.+.+.|+|+++...........+..+|.+++|..... .++..+...+..+.+.. ...+-+|.|+.+......
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~---- 122 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV---- 122 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccccc----
Confidence 35678899998643222122222446789888877644 45566666555554431 223568889988543211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
........+++..+++++.
T Consensus 123 v~~~~~~~~~~~~~~~~~e 141 (188)
T cd04125 123 VDSNIAKSFCDSLNIPFFE 141 (188)
T ss_pred CCHHHHHHHHHHcCCeEEE
Confidence 1112344566666766543
No 258
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.13 E-value=0.047 Score=52.54 Aligned_cols=145 Identities=14% Similarity=0.183 Sum_probs=74.5
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 255 (386)
|.+.+|-=|+||||+--+|... ..|.|+.+|--|...-++. ..+... ... ++.-+. .
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD------~~ll~~--~~~--------~v~eL~-----~ 62 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVD------DQLIGD--RAT--------QIKTLT-----N 62 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCcccc------HHHHhC--cCc--------eEEEEC-----C
Confidence 4455588899999999988754 4689999998887443332 111110 000 111111 1
Q ss_pred cccc-cCCchHHHHHHHHHHhcCCC--CCcEEEEcCCCCCChHHHhh--------hhhcCCCeEEEEeCCCcchH--HHH
Q 016622 256 GRAI-MRGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQLTL--------CQVVPLTAAVIVTTPQKLAF--IDV 322 (386)
Q Consensus 256 ~~~~-~~~~~~~~~l~~ll~~~~~~--~yD~VIIDtpp~~~~~~~~~--------~~~~~~d~vviV~~~~~~s~--~~~ 322 (386)
++.+ .....+...+.++++....+ .+|+|||.+.+......+.. ......+.++.|+++..... ...
T Consensus 63 GCiCCs~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~ 142 (318)
T PRK11537 63 GCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF 142 (318)
T ss_pred CEEEEccCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc
Confidence 1111 11234455666666433212 59999999975433221111 11112467888877754321 111
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
....+++.... -+|+||++..
T Consensus 143 ~~~~~Qi~~AD----~IvlnK~Dl~ 163 (318)
T PRK11537 143 TIAQSQVGYAD----RILLTKTDVA 163 (318)
T ss_pred HHHHHHHHhCC----EEEEeccccC
Confidence 11223343332 3888998754
No 259
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.13 E-value=0.012 Score=51.85 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=36.0
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+++.+|.++ |..|+||||++..|+..+...|..+.++|.|..+
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 445677776 8889999999999999998888889999887644
No 260
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.12 E-value=0.065 Score=45.72 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+..............+|.+++|..... .++..+...+..+... +.++ -+|.|+++.......
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~~--- 126 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL-LLIGNKCDLEEQREV--- 126 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccccccccc---
Confidence 3678999999643221222222345788888877655 3566666666655443 3444 488899886432111
Q ss_pred cCCChHHHHHHHhCC
Q 016622 356 FGRGSGSQVVQQFGI 370 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~ 370 (386)
.......+++.++.
T Consensus 127 -~~~~~~~~~~~~~~ 140 (165)
T cd01864 127 -LFEEACTLAEKNGM 140 (165)
T ss_pred -CHHHHHHHHHHcCC
Confidence 11245566776664
No 261
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.12 E-value=0.0084 Score=52.92 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=30.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH----------CCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~----------~G~rVllID~D~~~ 214 (386)
-+.+..+.+|+||||++.++|..++. .+.+|++|+++...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 35555699999999999999999996 67899999998754
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.12 E-value=0.022 Score=57.43 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=50.2
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~-------~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
++.+-+.|||+|+-..-.......+..+|.+++|+.+....+ ..+++.+..++..|++.+-+++|+++..
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 367889999999532222223334556799999998876433 3677788888888998777889999854
No 263
>PRK04328 hypothetical protein; Provisional
Probab=96.10 E-value=0.017 Score=53.56 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=33.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.++.|+ +.+|+|||+++.+++...+++|.++++|.++-.
T Consensus 24 s~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 24 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 456665 889999999999999998888999999999763
No 264
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.10 E-value=0.0098 Score=55.49 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+.+|.+|+|||+++.++|...+++|.+|++++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 44555599999999999999999999999999999984
No 265
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.10 E-value=0.12 Score=44.85 Aligned_cols=91 Identities=10% Similarity=0.152 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+......+.......+|.+++|...+ ..++..+....+.+.+ .+.++ -+|.||++......
T Consensus 48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilvgNK~Dl~~~~~-- 124 (172)
T cd04141 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL-VLVGNKVDLESQRQ-- 124 (172)
T ss_pred EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhhhhcCc--
Confidence 3467888999864332222222244568888876654 3566666654444443 24554 47889998643211
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
........+++..+++++.
T Consensus 125 --v~~~~~~~~a~~~~~~~~e 143 (172)
T cd04141 125 --VTTEEGRNLAREFNCPFFE 143 (172)
T ss_pred --cCHHHHHHHHHHhCCEEEE
Confidence 1123456677777877653
No 266
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.09 E-value=0.093 Score=46.12 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcCCCCCceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
.+.+-|+|+++......+.......+|.+++|..... .++..+...++.+... +.+ +-+|.|+++...........
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v 127 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQV 127 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCcc
Confidence 3456688888543211121122335788888877643 4555555566666544 445 45888999853321110011
Q ss_pred CCChHHHHHHHhCCCeE
Q 016622 357 GRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl 373 (386)
......++++.++.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 128 DFHDVQDFADEIKAQHF 144 (193)
T ss_pred CHHHHHHHHHHcCCeEE
Confidence 11234455666666544
No 267
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.09 E-value=0.083 Score=44.98 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+......+....+..++.+++|.... ..+..++.+.+..+.+. +.+ +-+|.|+.+.......
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~--- 126 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV--- 126 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---
Confidence 456889999864322222222244568788876654 45666666666655443 234 4578899885432111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......+++..+++++
T Consensus 127 -~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 127 -PTEEAKAFAEKNGLSFI 143 (165)
T ss_pred -CHHHHHHHHHHcCCEEE
Confidence 11234555555565543
No 268
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.035 Score=54.50 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+-+=|+|||+--.-...+.-.+.++|..++|+.+...--..+.++.+.++-.+++++-+| |+.+.......
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rdP~------ 151 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRDPL------ 151 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCChH------
Confidence 45556689999632212223334777899999999888766788999999999999988554 99886553211
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
+.++++++.+++.
T Consensus 152 ELLdEiE~~L~i~ 164 (528)
T COG4108 152 ELLDEIEEELGIQ 164 (528)
T ss_pred HHHHHHHHHhCcc
Confidence 4688999998853
No 269
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.07 E-value=0.15 Score=43.14 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-CC--CCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-LK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~-~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+.. .+ .+ +-++.|+++.......
T Consensus 48 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~--- 123 (161)
T cd01861 48 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQV--- 123 (161)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCcc---
Confidence 3568899998643322222222445788888877654 345666666665533 23 44 5588899887321111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......+.+..+.+++
T Consensus 124 -~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 124 -STEEGEKKAKELNAMFI 140 (161)
T ss_pred -CHHHHHHHHHHhCCEEE
Confidence 11234555666665543
No 270
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.06 E-value=0.012 Score=51.23 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=33.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+..|.|+ |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 3477776 99999999999999999998888899998664
No 271
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.06 E-value=0.052 Score=56.81 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.|.+.|+|||+-..........+..+|.+++|+.....--......+..+...+++++ +|+|+++..
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl~ 139 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDLP 139 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCC
Confidence 46789999998533211122223556799999988765322233344444555677755 788999864
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.059 Score=50.62 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++=|+ |-.|+||||+|.+++....+.|.+|.+||+.-
T Consensus 61 ~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 61 RITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred eEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 566677 88999999999999999999999999999863
No 273
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.05 E-value=0.15 Score=43.20 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+-|+|+|+...........+..+|.+++|..... .++..+......+.+ .+.+++ +|.|+++......
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl~~~~~--- 122 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDLESERV--- 122 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccce---
Confidence 4667889998643222222222445688888776554 455555554444432 245544 7889988643211
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
........+.+.++.+++
T Consensus 123 -~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 123 -VSTEEGKELARQWGCPFL 140 (164)
T ss_pred -EcHHHHHHHHHHcCCEEE
Confidence 111245566777776554
No 274
>PF13245 AAA_19: Part of AAA domain
Probab=96.05 E-value=0.014 Score=43.70 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=29.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC----CCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~----G~rVllID~ 210 (386)
-+.+..+-+|+|||+++++++..+... |.+|+++-.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 345555999999999999999998865 889999843
No 275
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.05 E-value=0.011 Score=53.94 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=31.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~------G~rVllID~D~ 212 (386)
.++.++ |..|+|||+++.+++...... +.+|++||++.
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 466665 999999999999999876543 47999999976
No 276
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.04 E-value=0.0079 Score=55.71 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=31.9
Q ss_pred EEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 178 v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+..|.+|+||||+|..|+..+...|++|.+++.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 445999999999999999999988999999988753
No 277
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.03 E-value=0.086 Score=44.95 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~ 346 (386)
..+.+-|+||++.-....+....+..+|.+++|...+. .+..++...++.+++. +.++ -+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECccC
Confidence 45678899998643222222222456789999888754 4556666666666553 4554 488999885
No 278
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.01 E-value=0.05 Score=48.84 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=33.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
..++|+|+ |-.|+||||+..+++..+. .+.+|.++..|+.
T Consensus 21 ~~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 35688887 8889999999999998875 4579999998864
No 279
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.00 E-value=0.11 Score=43.94 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..++. .+.+ +-+|.|+.+......
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~--- 122 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQRE--- 122 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhcc---
Confidence 45678899998642211122222446788888877654 345555555554433 2444 558889987543211
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
........+.+.++.+++
T Consensus 123 -~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 123 -VTFLEASRFAQENGLLFL 140 (161)
T ss_pred -CCHHHHHHHHHHcCCEEE
Confidence 112345666777775544
No 280
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.99 E-value=0.04 Score=56.04 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChH--------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
....+.|+|||+-..+. ......+..+|.+++|+......-..-....+.++..+.+++ +|.|+++..
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl~ 159 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDDE 159 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCC
Confidence 45568899998632110 011122445799999988765322223556677777777766 788999864
No 281
>PTZ00416 elongation factor 2; Provisional
Probab=95.99 E-value=0.031 Score=60.74 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..|-+.++|||+-..-.......+..+|.+++|+.+...-......+++.+.+.+.+++ +++|+++..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35778999999643322222333556799999998877655667788888888888766 778999875
No 282
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.98 E-value=0.029 Score=52.92 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=32.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+|.++ +..|+||||+...|...|... +++.+|+-|...
T Consensus 105 ~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 105 LVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 478887 889999999999999998655 589999888743
No 283
>PHA00729 NTP-binding motif containing protein
Probab=95.98 E-value=0.01 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La 199 (386)
.|.|+ |.+|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 56666 7899999999999999875
No 284
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=95.96 E-value=0.053 Score=51.88 Aligned_cols=39 Identities=38% Similarity=0.552 Sum_probs=34.7
Q ss_pred eEEEEEeCc-CCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~k-GGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+|+|-+-. ||+|||.++..||..|.++|++|.++-=..
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 488888876 999999999999999999999999996543
No 285
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.94 E-value=0.009 Score=57.74 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCC
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 215 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~ 215 (386)
++..|-.|+||||++..|+..|. ..|.+|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 56669999999999999999998 6899999999997553
No 286
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.94 E-value=0.14 Score=45.52 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCC---hH-----HHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTG---DI-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~---~~-----~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~ 347 (386)
.+.++|+|||+-.. .. .........+|.+++|...... +........++++.. +.+ +-+|+|+++..
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccC
Confidence 34789999986321 10 0011113357888888876543 333444444555443 344 45888998864
Q ss_pred C
Q 016622 348 A 348 (386)
Q Consensus 348 ~ 348 (386)
.
T Consensus 167 ~ 167 (204)
T cd01878 167 D 167 (204)
T ss_pred C
Confidence 3
No 287
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.92 E-value=0.017 Score=59.32 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~ 214 (386)
.++.++ |.+|+|||+++.+++...+++ |.+|++|.++-..
T Consensus 32 s~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 32 RPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 466665 899999999999999988877 9999999998644
No 288
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.91 E-value=0.18 Score=42.82 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.++|+|+......+....+..+|.+++|...+. .++..+...++.+.+. +.+ .-+|.|+++.......
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--- 125 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEV--- 125 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC---
Confidence 45788999998532211222233445789999887654 3455555555555443 344 4578899886432111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.....+.+.+.++.+++
T Consensus 126 -~~~~~~~~~~~~~~~~~ 142 (164)
T cd04101 126 -TDAQAQAFAQANQLKFF 142 (164)
T ss_pred -CHHHHHHHHHHcCCeEE
Confidence 11123455566665543
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.90 E-value=0.012 Score=54.99 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=33.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~ 213 (386)
.+.+.++..|+||||++.++|..++.. |.+|+++.++..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 355556999999999999999999877 999999999763
No 290
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.90 E-value=0.12 Score=45.34 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
+.+.+.++|+|+...........+..+|.+++|+..... ++..+...+..+.+ .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----
Confidence 456789999985432222222224467899998876543 34444444433322 2455 4588899885321
Q ss_pred cccCCChHHHHHHHhCCC
Q 016622 354 YPFGRGSGSQVVQQFGIP 371 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~p 371 (386)
...+++.+.+++.
T Consensus 134 -----~~~~~i~~~l~l~ 146 (184)
T smart00178 134 -----ASEDELRYALGLT 146 (184)
T ss_pred -----CCHHHHHHHcCCC
Confidence 2456777777643
No 291
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.89 E-value=0.016 Score=50.86 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=30.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+-+.++ |..|+|||.+|..+|..+.++|++|.+++.+
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 457776 6789999999999999999999999999864
No 292
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.89 E-value=0.16 Score=48.85 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=76.8
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCCCc
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 256 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~ 256 (386)
.|.+|-=|+||||+-.+|..... |+|+.+|=-++.--++.. .. .+ ......+.-++ ++
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~-----~~---------~l-~~~~e~~~El~-----nG 61 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDG-----GA---------LL-SDTGEEVVELT-----NG 61 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccC-----CC---------cc-ccCCccEEEeC-----Cc
Confidence 34447779999999888877665 899999876664433321 00 01 00111121121 11
Q ss_pred ccccC-CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HH--h------hhhhcCCCeEEEEeCCCcchHH---HHH
Q 016622 257 RAIMR-GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QL--T------LCQVVPLTAAVIVTTPQKLAFI---DVA 323 (386)
Q Consensus 257 ~~~~~-~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~--~------~~~~~~~d~vviV~~~~~~s~~---~~~ 323 (386)
+.+-. .......+.++.+ .+ +.+|+|||.+.+ +.+. .. + +......|.++-|+.+....-. ...
T Consensus 62 CICCT~r~dl~~~~~~L~~-~~-~~~D~ivIEtTG-lA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~ 138 (323)
T COG0523 62 CICCTVRDDLLPALERLLR-RR-DRPDRLVIETTG-LADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE 138 (323)
T ss_pred eEEEeccchhHHHHHHHHh-cc-CCCCEEEEeCCC-CCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH
Confidence 11111 1234456666666 33 679999999985 4332 11 1 1112235678888777654321 123
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
.+.+++...++ +|+||++...
T Consensus 139 ~~~~Qia~AD~----ivlNK~Dlv~ 159 (323)
T COG0523 139 LAEDQLAFADV----IVLNKTDLVD 159 (323)
T ss_pred HHHHHHHhCcE----EEEecccCCC
Confidence 33444544433 8999988654
No 293
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.0083 Score=56.58 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=34.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH----CC------CcEEEEEcCCCCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPSL 217 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~----~G------~rVllID~D~~~~sl 217 (386)
+..|.-+-||+||||++..|..+|+. .| .+|++|.+....+++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence 55556699999999999999999883 24 489999998877765
No 294
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.88 E-value=0.017 Score=42.22 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.3
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
|+++ |..|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 5555 889999999999999999 6788888876
No 295
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.87 E-value=0.18 Score=42.59 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+-|+|+|+.-....+.-.....+|.+++|...+ ..++..+....+.+.+. +.+++ +|.|+++.......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~-- 124 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV-LVGNKCDLEDERVV-- 124 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccee--
Confidence 455678999864322122112234568888876554 44666666665555432 45544 88899885432111
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
.......+.+.++.+++
T Consensus 125 --~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 125 --SREEGQALARQWGCPFY 141 (163)
T ss_pred --cHHHHHHHHHHcCCeEE
Confidence 11234556677776554
No 296
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.87 E-value=0.11 Score=45.67 Aligned_cols=89 Identities=12% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+.+......
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~---- 123 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERV---- 123 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccc----
Confidence 4578899998643221122222345788888877654 4566666666666543 344 458889988643211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
......+.+.+.++.+++
T Consensus 124 ~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 124 VKREDGERLAKEYGVPFM 141 (191)
T ss_pred cCHHHHHHHHHHcCCeEE
Confidence 111345667777776654
No 297
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.84 E-value=0.013 Score=52.02 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=31.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCc----EEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~r----VllID~D~~ 213 (386)
+|+|+ |-+|+||||+|..|+..|.+.|.. +.++..|-+
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 56776 889999999999999999988877 667766643
No 298
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.82 E-value=0.17 Score=42.58 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~ 348 (386)
.+++.|+|+|+...........+..+|.+++|..+... ++..+...+..+.+ .+.+ +-+|.||++...
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 114 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCcc
Confidence 56899999986433222222224567889999888765 45555544443322 2444 447789988643
No 299
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.81 E-value=0.19 Score=43.11 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+++-|+|+++..... .+.......+|.+++|...+. .++..+....+.+... +.++ -+|.|+.+......
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~- 126 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR-ILVGNKCDLREQIQ- 126 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCE-EEEEECccchhhcC-
Confidence 45788999997532211 111122335688888877754 4566666666555443 3554 58889988643211
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++..+++++.
T Consensus 127 ---~~~~~~~~~~~~~~~~~~e 145 (170)
T cd04115 127 ---VPTDLAQRFADAHSMPLFE 145 (170)
T ss_pred ---CCHHHHHHHHHHcCCcEEE
Confidence 1113455677777766653
No 300
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.81 E-value=0.22 Score=42.46 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+..............+|.+++|..... .++..+...++.+.... ...+-+|.|+++......
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~---- 124 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD---- 124 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC----
Confidence 35678999998543221222222446788888877654 45666666665554432 224568899988643221
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......++++..+.+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 125 VTYEEAKQFADENGLLFL 142 (166)
T ss_pred cCHHHHHHHHHHcCCEEE
Confidence 112345666777776654
No 301
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.80 E-value=0.1 Score=54.47 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 282 D~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.|+|||+-.....+.......+|.+++|+..+......+...+..++..+++++ +++|+++..
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiI-VviNKiDl~ 200 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII-VAINKIDKP 200 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 78999998633222222222445789999988776555566667777777788855 888999863
No 302
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.80 E-value=0.015 Score=53.37 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=34.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~ 214 (386)
-+.+.++..|+|||+++.+++..++.. |.+|+++.++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 345555999999999999999999987 9999999988743
No 303
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=95.78 E-value=0.24 Score=44.58 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-----CCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~-----~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+.+.|+|+++......+.......+|.+++|..... .++..+......+.+.. ...+-+|.|+.+......
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~-- 126 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT-- 126 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc--
Confidence 4678899998532211222222446799999877654 36666666666665431 124568999998642111
Q ss_pred cccCCChHHHHHHHhCCCeE
Q 016622 354 YPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl 373 (386)
........+++.++.+++
T Consensus 127 --v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 127 --VKDDKHARFAQANGMESC 144 (215)
T ss_pred --cCHHHHHHHHHHcCCEEE
Confidence 111245566666675543
No 304
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.78 E-value=0.15 Score=43.32 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCCh-------H----HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-------I----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-------~----~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+..++.++|||+.... . .........+|.+++|+......-.......+.+...+.+++ +|+||++..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~ 126 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLV 126 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccC
Confidence 3456899999863211 0 011112335688898887655433334455666665666655 788998753
No 305
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.77 E-value=0.3 Score=41.65 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=49.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCeEEEEEcCCcCCCCCc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGK 351 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~------~~~i~gvVlN~~~~~~~~~ 351 (386)
..+.+.++|+++.-....+.......+|.+++|...+ ..+...+...++.+++. +.++ -+|.|+.+......
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl~~~~~ 125 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPI-MLVGNKCDESHKRE 125 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCE-EEEEECccccccCe
Confidence 3467889999865432222222244568878776654 34566666666655442 3454 48899988643111
Q ss_pred eecccCCChHHHHHHHhCCCeE
Q 016622 352 RYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 352 ~~~~~~~~~~~~i~~~~g~pvl 373 (386)
. ........+...+.+++
T Consensus 126 v----~~~~~~~~~~~~~~~~~ 143 (165)
T cd04140 126 V----SSNEGAACATEWNCAFM 143 (165)
T ss_pred e----cHHHHHHHHHHhCCcEE
Confidence 1 11223445555665543
No 306
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.77 E-value=0.29 Score=44.40 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~-~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+.+.|+|+++.. ....... .. .+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 48 ~~~~l~i~Dt~G~~-~~~~~~~-~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v 124 (221)
T cd04148 48 EESTLVVIDHWEQE-MWTEDSC-MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREV 124 (221)
T ss_pred EEEEEEEEeCCCcc-hHHHhHH-hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhcccccee
Confidence 35678899998643 2111111 22 5789888877654 4666676666666543 345 4588899885432111
Q ss_pred ecccCCChHHHHHHHhCCCeE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl 373 (386)
.......+++.++.+++
T Consensus 125 ----~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 125 ----SVQEGRACAVVFDCKFI 141 (221)
T ss_pred ----cHHHHHHHHHHcCCeEE
Confidence 11223456666676554
No 307
>PRK05439 pantothenate kinase; Provisional
Probab=95.77 E-value=0.02 Score=54.62 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~--~G~rVllID~D~~~ 214 (386)
.+.+|+|+ |..|+||||+|..|+..|.+ .|.+|.+|..|-+.
T Consensus 85 ~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34588887 88999999999999999876 47899999998654
No 308
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=95.74 E-value=0.029 Score=58.55 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|+|+--.-..........+|.+++|+..+......+...+..++..+++.+-+|+||++..
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 46789999985221112223334567999999888764445556666777778888566899999864
No 309
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.72 E-value=0.15 Score=44.01 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l-~~---~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.++|+|+...........+..+|.+++|...... ++......+..+ .. .+.++ -+|.|+++..
T Consensus 56 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~ 128 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL-LILANKQDLP 128 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECcccc
Confidence 356789999985432111212224467888888876654 444444444333 21 34554 4888998864
No 310
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.018 Score=53.61 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.+-+.++ |+.|+|||.+|+++|..+.+.|.+|+++..
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3467777 999999999999999999988999999965
No 311
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=95.67 E-value=0.071 Score=53.46 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~--~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.|+|||+--.-.......+..+|.+++|+.... .-.......+.++...+.+.+-+++||++..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 67889999999632111112222446799999988765 2223445556666667766566899999864
No 312
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=95.66 E-value=0.05 Score=57.09 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=46.7
Q ss_pred CcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.-+-|||||+ ..+. ......+..+|.+++|+..+..-.......+..+...+++.+-+|+||++..
T Consensus 51 ~~i~~IDtPG-he~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 RVLGFIDVPG-HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred cEEEEEECCC-HHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 3468999995 3221 2223334567999999988775556677778888888888767999999864
No 313
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.61 E-value=0.11 Score=54.48 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..|.+.|+|||+-..........+..+|.+++|+......-......+..+.+.+++++ +|+|+++...... .
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiI-iViNKiDl~~~~~------~ 140 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEII-PVINKIDLPSADP------E 140 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCCccCH------H
Confidence 35788999998543222222233556799999988765322223333333444577754 7889998642110 0
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++.+.++.+
T Consensus 141 ~~~~el~~~lg~~ 153 (595)
T TIGR01393 141 RVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHhCCC
Confidence 1235566666653
No 314
>PLN03110 Rab GTPase; Provisional
Probab=95.59 E-value=0.19 Score=45.29 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+-|+|+++......+....+..++.+++|.... ..++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~--- 135 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSV--- 135 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCC---
Confidence 457788999864332222223345678888887764 44566666666655543 344 4478899885432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++.++++++.
T Consensus 136 -~~~~~~~l~~~~~~~~~e 153 (216)
T PLN03110 136 -AEEDGQALAEKEGLSFLE 153 (216)
T ss_pred -CHHHHHHHHHHcCCEEEE
Confidence 113455666666766554
No 315
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.57 E-value=0.25 Score=42.10 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=40.4
Q ss_pred CcEEEEcCCCCCC---h----HHHhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcC-----CCCeEEEEEcCCcC
Q 016622 281 LDYLVIDMPPGTG---D----IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (386)
Q Consensus 281 yD~VIIDtpp~~~---~----~~~~~~~~~~~d~vviV~~~~~~--s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~ 346 (386)
..+.++|||+-.. . .......+..+|.+++|...... +........+.+.+. +.++ -+|+|+++.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhc
Confidence 3789999996321 0 01111223347899999887654 566666666665543 3444 488899986
Q ss_pred CC
Q 016622 347 DA 348 (386)
Q Consensus 347 ~~ 348 (386)
..
T Consensus 127 ~~ 128 (170)
T cd01898 127 LD 128 (170)
T ss_pred CC
Confidence 43
No 316
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.56 E-value=0.3 Score=40.87 Aligned_cols=89 Identities=12% Similarity=0.263 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.++|+|+...........+..+|.+++|..... .+..++......+.+. +.+ +-+|.|+++.......
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-- 122 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV-- 122 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee--
Confidence 4678899998744322222233445788888876643 4555666555555432 344 4588999886542111
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
.......+.+..+.+++
T Consensus 123 --~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 123 --SKEEGKALAKEWGCPFI 139 (160)
T ss_pred --cHHHHHHHHHHcCCcEE
Confidence 11345556666665554
No 317
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.55 E-value=0.48 Score=39.71 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecc
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
+.+-|+|+++......+....+..+|.+++|...+ ..++.++......+.+ .+.+++ +|.|+++.....
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~----- 122 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV-LVGNKCDLAART----- 122 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccce-----
Confidence 44667999854322222222244567777775543 3455555554444433 245544 788998864311
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......++.+.++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 123 VSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred ecHHHHHHHHHHhCCeEE
Confidence 111235566677777654
No 318
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.51 E-value=0.026 Score=52.58 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=37.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
++++|+ |.+|+|||+++.+++...++.|.+|++|..+-....+
T Consensus 24 ~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 566666 9999999999999999999999999999998755443
No 319
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.50 E-value=0.18 Score=43.57 Aligned_cols=92 Identities=7% Similarity=-0.052 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~---~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+-|+|+|+......+....+..+|.+++|..... .++......++.+.+.. ...+-+|.|+.+....... .
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~--~ 125 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY--A 125 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc--c
Confidence 4568899998543222222333556799999987744 45666666665543321 2345689999886332110 0
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
........+++.++.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 126 LMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred ccHHHHHHHHHHcCCeEE
Confidence 011223456666776654
No 320
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.49 E-value=0.025 Score=52.66 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~ 214 (386)
-+.+.++.+|+|||+++.++|..++.. |++|+++.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 456666999999999999999999987 6999999998744
No 321
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.47 E-value=0.26 Score=42.19 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH----HcCCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l----~~~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+++.++|+|+...........+..+|.+++|.+... .++......+..+ ...+.+++ ++.|+++....
T Consensus 56 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~---- 130 (173)
T cd04155 56 DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL-VFANKQDLATA---- 130 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECCCCccC----
Confidence 35678899997532211111111345678888876654 2344444333332 22345644 66799875321
Q ss_pred cccCCChHHHHHHHhCC
Q 016622 354 YPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~ 370 (386)
...+++.+.+++
T Consensus 131 -----~~~~~i~~~l~~ 142 (173)
T cd04155 131 -----APAEEIAEALNL 142 (173)
T ss_pred -----CCHHHHHHHcCC
Confidence 235566676664
No 322
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=95.47 E-value=0.68 Score=40.07 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-cC--CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL--KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~-~~--~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+......+...-...+|.+++|..... .++.++...+..+. +. ....+.+|.|+++....
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 129 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA----- 129 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-----
Confidence 45678999998643322222222456799999988654 34666665554442 21 12345689999985321
Q ss_pred ccCCChHHHHHHHhCC
Q 016622 355 PFGRGSGSQVVQQFGI 370 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~ 370 (386)
...+++.+.++.
T Consensus 130 ----~~~~~i~~~~~~ 141 (175)
T smart00177 130 ----MKAAEITEKLGL 141 (175)
T ss_pred ----CCHHHHHHHhCc
Confidence 124566666654
No 323
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.46 E-value=0.022 Score=51.74 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=32.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~--~G~rVllID~D~~~ 214 (386)
+|+|. |..|+||||++..|+..+.. .+.+|.+|-.|-..
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 36666 88999999999999999975 56789999888653
No 324
>PRK06526 transposase; Provisional
Probab=95.45 E-value=0.013 Score=54.52 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=30.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.+.++ |.+|+|||+++.+|+..+.++|++|+++.+
T Consensus 99 ~nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 355565 889999999999999999999999987544
No 325
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.43 E-value=0.42 Score=40.75 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
.+.+.|+|+++...........+..+|.+++|.... ..++..+...++.+.+.. ...+-+|.|+++.......
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---- 124 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV---- 124 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc----
Confidence 456889999753221222222244578888886653 345566666555554432 2235688899886432111
Q ss_pred CCChHHHHHHHhCCCeE
Q 016622 357 GRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl 373 (386)
......++++.++.+++
T Consensus 125 ~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 125 SSERGRQLADQLGFEFF 141 (165)
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 11345567777777654
No 326
>PLN03118 Rab family protein; Provisional
Probab=95.43 E-value=0.15 Score=45.71 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHH-HHHHc----CCCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSK----LKVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~-~~l~~----~~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+.+.|+|+|+......+....+..+|.+++|..... .++..+.... ..+.. .+.+ +-+|.|+.+.......
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i 138 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDV 138 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc
Confidence 34678999998643322222233446788888877654 3444444432 22221 1334 4477899886432111
Q ss_pred ecccCCChHHHHHHHhCCCeE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl 373 (386)
.......+.+..+.+++
T Consensus 139 ----~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 139 ----SREEGMALAKEHGCLFL 155 (211)
T ss_pred ----CHHHHHHHHHHcCCEEE
Confidence 11234455555565543
No 327
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.41 E-value=0.13 Score=55.25 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-.....+.......+|.+++|+..+......+...+..+...+++++ +++|+++..
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl~ 402 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDKP 402 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECcccc
Confidence 34678999999632222222222445689999988776555566677777888888855 888999863
No 328
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.40 E-value=0.033 Score=50.67 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
..+.+. +..|+||||++.+++...++.|.+|++++++..
T Consensus 21 ~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 456665 899999999999999888888999999998653
No 329
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.017 Score=51.25 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=33.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.|.++ |-+|+||||+|-+||..|.+.+.+|.-+..|...
T Consensus 3 LiIlT-GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 3 LIILT-GYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred eEEEe-cCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 44444 9999999999999999999999999988887644
No 330
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.31 E-value=0.032 Score=53.60 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++-|+ |..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 355555 78999999999999999999999999999853
No 331
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=95.30 E-value=0.56 Score=41.00 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=47.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l-~~---~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
+.+.+.|+|+|+..............+|.+++|..... .++..+...+..+ .. .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 133 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNA---- 133 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC----
Confidence 45779999998543222222222456799999988753 4455555544433 22 1344 5588999885321
Q ss_pred cccCCChHHHHHHHhCCC
Q 016622 354 YPFGRGSGSQVVQQFGIP 371 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~p 371 (386)
...+++.+.++..
T Consensus 134 -----~~~~~i~~~l~~~ 146 (182)
T PTZ00133 134 -----MSTTEVTEKLGLH 146 (182)
T ss_pred -----CCHHHHHHHhCCC
Confidence 1234566666643
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.067 Score=49.98 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..-.|--+|||+-..-.--.+.....+|+.|+|+.+.....-.++..+-+.++.|++.+-+++|+++...
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 3446788999853322222223334569999999988888888888888889999999999999998654
No 333
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.30 E-value=0.48 Score=39.98 Aligned_cols=91 Identities=9% Similarity=0.071 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-------CCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-------KVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-------~~~i~gvVlN~~~~~~~~ 350 (386)
..+.+.|+|||+.-....+.......+|.+++|..... .++..+...+..+.+. ....+-+|.|+++.....
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 126 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR 126 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc
Confidence 45788899998642222222222345788999887654 3455555555554332 123356888999864211
Q ss_pred ceecccCCChHHHHHHHhCCCeE
Q 016622 351 KRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
. ........+++..+.+++
T Consensus 127 ~----~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 127 A----VSEDEGRLWAESKGFKYF 145 (168)
T ss_pred c----cCHHHHHHHHHHcCCeEE
Confidence 1 111234456666676654
No 334
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.26 E-value=0.31 Score=43.23 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~-------~~~~i~gvVlN~~~~~~~~ 350 (386)
..+.+.|+|+|+......+.-..+..+|.+++|.... ..++..+......+.. .+.++ -+|.|+.+.....
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pi-ilv~NK~Dl~~~~ 126 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPC-LLLANKCDLKKRL 126 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEEECCCccccc
Confidence 4577899999864322222222245678888887765 4456666555544432 23454 5888999864211
Q ss_pred ceecccCCChHHHHHHHhC
Q 016622 351 KRYYPFGRGSGSQVVQQFG 369 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g 369 (386)
.......+++++..+
T Consensus 127 ----~~~~~~~~~~~~~~~ 141 (201)
T cd04107 127 ----AKDGEQMDQFCKENG 141 (201)
T ss_pred ----ccCHHHHHHHHHHcC
Confidence 111234566677666
No 335
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.26 E-value=0.027 Score=50.10 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=30.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+|+++ |-.|+||||++..|+..+ .+.++.++.+|...
T Consensus 1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 35666 789999999999999988 56689999998654
No 336
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.25 E-value=0.25 Score=42.32 Aligned_cols=69 Identities=7% Similarity=0.025 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH-c-CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS-K-LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~-~-~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.++|+++......+....+..+|.+++|...... ++..++..+..+. . .+.+++ +|.|+++...
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pii-lv~NK~Dl~~ 113 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLV-VLANKQDLPA 113 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEE-EEEeCcCCcC
Confidence 456789999986432222222235567999998876543 4555554444443 2 345554 8889998643
No 337
>PRK09183 transposase/IS protein; Provisional
Probab=95.23 E-value=0.032 Score=52.10 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
..+.++ |..|+|||+++..+|..+..+|++|+++++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 356666 889999999999999998899999998864
No 338
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.22 E-value=0.054 Score=47.15 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=47.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
.|-|+ .-.|=||||-|..+|...+-+|.||+++=+==..... | +.......+++.+...+..-
T Consensus 5 ~i~vy-tG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~----G------------E~~~l~~l~~~~~~~~g~~f 67 (172)
T PF02572_consen 5 LIQVY-TGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYS----G------------ELKALKKLPNVEIERFGKGF 67 (172)
T ss_dssp -EEEE-ESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS------H------------HHHHHGGGT--EEEE--TT-
T ss_pred EEEEE-eCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCc----C------------HHHHHHhCCeEEEEEcCCcc
Confidence 34444 4458899999999999999999999999542110000 0 00000111234444444310
Q ss_pred C---cccccCCchHHHHHHHHHHhcCCCCCcEEEEcC
Q 016622 255 Q---GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 288 (386)
Q Consensus 255 ~---~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDt 288 (386)
. .............++...+.+..+.||+||+|=
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~dlvILDE 104 (172)
T PF02572_consen 68 VWRMNEEEEDRAAAREGLEEAKEAISSGEYDLVILDE 104 (172)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHTT-TT-SEEEEET
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 0 000000123445666667677668999999995
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.21 E-value=0.043 Score=49.82 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.+. +..|+|||+++.+++...+++|.+|++++++.
T Consensus 17 ~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 17 HVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466665 77999999999999999888899999999976
No 340
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=95.20 E-value=0.033 Score=50.74 Aligned_cols=39 Identities=33% Similarity=0.344 Sum_probs=35.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~ 212 (386)
.+-++|. |..|+|||+++..|...+. +.|.+++++|..-
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 4588888 8999999999999999999 8999999998754
No 341
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.20 E-value=0.55 Score=39.56 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+++.++|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+.+....
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~---- 121 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENR---- 121 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCccccc----
Confidence 35678999998743222222222345788888877654 345555554444433 2344 4478899886421
Q ss_pred cccCCChHHHHHHHhCCCeE
Q 016622 354 YPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl 373 (386)
........++.+..+.+++
T Consensus 122 -~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 122 -EVTREEGLKFARKHNMLFI 140 (161)
T ss_pred -ccCHHHHHHHHHHcCCEEE
Confidence 1112345566666676654
No 342
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.20 E-value=0.038 Score=52.84 Aligned_cols=45 Identities=29% Similarity=0.180 Sum_probs=39.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~ 218 (386)
++.+++. |-..+||||++.-|.-+..+.|++.+.+|+|+.++++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence 4567777 56689999999999999999999999999999998753
No 343
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.18 E-value=0.039 Score=48.79 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=31.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.|+|. |-.|+||||++..|+..|...|++|..+-.
T Consensus 4 ~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 567777 889999999999999999999999977643
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.14 E-value=0.035 Score=55.62 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=34.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.+.++.+|.|||+++.++|..++ +.|++|+++.++...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 4556669999999999999999998 789999999988643
No 345
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.12 E-value=0.043 Score=55.96 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~ 212 (386)
+++.|. |-+|+||||++.+++..-+++ |.++++|.++-
T Consensus 22 ~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 22 RSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 456665 999999999999999887665 99999999974
No 346
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.11 E-value=0.088 Score=56.08 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-.....+....+..+|.+++|+..+......+...+..+...+++++ +++|+++..
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl~ 360 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDKA 360 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCcc
Confidence 35789999998532111122223445799999987765444455666777777788855 888999864
No 347
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.10 E-value=0.12 Score=49.71 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.|.-..|..|+|||+++..+|...+. .|.+|++||+.-
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 44444499999999999999976542 367999999874
No 348
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.07 E-value=0.72 Score=39.80 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l-~~~---~~~i~gvVlN~~~~~ 347 (386)
+...+.++|+|+...........+..+|.+++|...... +.......+..+ +.. +.+ +-++.|+++..
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~ 129 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLK 129 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCC
Confidence 356789999986432111112224467999999887643 344444433333 222 344 55888998853
No 349
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.07 E-value=0.23 Score=43.17 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=27.1
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 305 ~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
++.+++|+.....-.......++.+...+.+++ +++|+++..
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~ 142 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLEMLEWLRERGIPVL-IVLTKADKL 142 (179)
T ss_pred hcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 467888877655322333355667777777755 778998853
No 350
>PRK12377 putative replication protein; Provisional
Probab=95.06 E-value=0.038 Score=51.16 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+.++ |..|+|||+++..+|..+.+.|++|+++...
T Consensus 103 ~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 55565 8899999999999999999999999988764
No 351
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.01 E-value=0.16 Score=50.97 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCCCC-----h------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTG-----D------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
...++.++|||+... + .......+..+|.+++|+.........-.+....+.+.+.+++ +|+|+++..
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~ 297 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLV 297 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCC
Confidence 456789999986321 0 0111223445799999988876443444566667766677755 888998854
No 352
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=95.01 E-value=0.31 Score=41.90 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-C--CCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-K--VPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-~--~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+..............+|.+++|..... .++.++...+..+.+. + ...+-+|.||.+..
T Consensus 41 ~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 45678999998643222222222456799999988655 3466665555544321 1 12456888998854
No 353
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.01 E-value=0.05 Score=49.98 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=34.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.++.|+ |-+|+|||+++.++++..+++|.+|++|.++...
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHP 61 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCH
Confidence 355555 9999999999999999988999999999988633
No 354
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.99 E-value=0.042 Score=48.36 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|+|. |--|+||||++..|+..|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56776 889999999999999999999999977654
No 355
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.99 E-value=0.46 Score=40.42 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=37.0
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc---CCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~ 347 (386)
+.+.++|+|+...........+..+|.+++|.+.... +...+...+..++. .+.++ -+|.|+.+..
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~-i~v~NK~D~~ 125 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVIT-ILVGNKIDLA 125 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECcccc
Confidence 5678899985322222222234457888888776542 34444444443433 34554 4888999864
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.99 E-value=0.032 Score=53.84 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=33.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+-+.++ |..|+|||+++..+|..+.++|++|+++.++
T Consensus 183 ~~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 3567777 7889999999999999999999999999874
No 357
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=94.98 E-value=0.41 Score=40.72 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
.+.+-|.|+++......+.......+|.+++|... +..++..+...++.+.... ...+-+|.|+.+.......
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v---- 123 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV---- 123 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC----
Confidence 35677899975332222222224456888888764 4456777766666554432 2245588899885432111
Q ss_pred CCChHHHHHHHhCCCeE
Q 016622 357 GRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl 373 (386)
.......+++..+.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 124 GDEQGNKLAKEYGMDFF 140 (161)
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 11346667777776654
No 358
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.96 E-value=0.043 Score=49.62 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=33.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+.+.++ |..|+|||+++..++..+.+.|.+++.++++..
T Consensus 39 ~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 39 RFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 366676 889999999999999998888999999998653
No 359
>PRK06217 hypothetical protein; Validated
Probab=94.95 E-value=0.037 Score=48.61 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|.|+ |-.|+||||++..|+..+ |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 357776 899999999999999876 544 677774
No 360
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.07 Score=48.05 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=32.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
.+|+|+ |-.|+||||+|..|...|... ++.+|-.|-+.-.
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~ 48 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD 48 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence 477887 888999999999999998644 8899988876544
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.88 E-value=0.036 Score=51.96 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=27.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.|.++ |-+|+||||+|..|+..|...+.+|.+|+-|.
T Consensus 3 Liil~-G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIILC-GLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 44444 99999999999999999999999999999654
No 362
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=94.88 E-value=0.67 Score=39.15 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=48.3
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecc
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
+.+-|+|+|+.-....+.......+|.+++|..... .++.++......+.+ .+.+++ +|.|+++......
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv-iv~nK~Dl~~~~~---- 123 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII-LVGNKVDLESERE---- 123 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcCc----
Confidence 456789998642211121122345688887765544 356666666555543 245544 7889988543211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
........+++.++.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 124 VSSAEGRALAEEWGCPFM 141 (163)
T ss_pred cCHHHHHHHHHHhCCEEE
Confidence 111234666677776654
No 363
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.87 E-value=0.11 Score=55.74 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.|-+.+||||+-..-.......+..+|.+++|+.+...--..++..++.+.+.+.+.+ +++||++..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECchhh
Confidence 46778999999533222222233455799999988766544567777777667778764 788999854
No 364
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.86 E-value=0.11 Score=56.61 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.|-+=|||||+-..-.......+..+|.+++|+.+...-...+++.++.+...+.+++ +++|+.+..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCccc
Confidence 4556799999533222223344556799999999877655667888888888888876 788999875
No 365
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=94.86 E-value=0.76 Score=40.86 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCC------ChH--HHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCeEEEEEcCC
Q 016622 280 ELDYLVIDMPPGT------GDI--QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMC 344 (386)
Q Consensus 280 ~yD~VIIDtpp~~------~~~--~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~------~~~~i~gvVlN~~ 344 (386)
.+.+.|+|||+.. +.. ......+..+|.+++|..... .++..+....+.+.+ .+.+ +-+|.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 4778899997521 111 001122456799999888754 456666665555433 2344 45888999
Q ss_pred cCCC
Q 016622 345 HFDA 348 (386)
Q Consensus 345 ~~~~ 348 (386)
+...
T Consensus 127 Dl~~ 130 (198)
T cd04142 127 DQQR 130 (198)
T ss_pred cccc
Confidence 8743
No 366
>COG4240 Predicted kinase [General function prediction only]
Probab=94.85 E-value=0.043 Score=49.47 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=33.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G-~rVllID~D~ 212 (386)
.|...||-.|+||||+++.+-..|+.+| ++++-+.+|-
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 4555569999999999999999999988 7999998874
No 367
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.28 Score=52.03 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=65.2
Q ss_pred CC-CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceeccc
Q 016622 278 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 278 ~~-~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
|+ +|.+=|||||+-.+-..-....+..+|++++|+.+...--..+...++++.+.+++.+ +++|+++......
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~~a~~----- 145 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRLGADF----- 145 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccccccCh-----
Confidence 45 4889999999744322222233445699999999888777788999999999999987 5669988654321
Q ss_pred CCChHHHHHHHhCCCeE-EecCC
Q 016622 357 GRGSGSQVVQQFGIPHL-FDLPI 378 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl-~~IP~ 378 (386)
....+++.+.++.+.. ..+|.
T Consensus 146 -~~~~~~l~~~l~~~~~~v~~pI 167 (697)
T COG0480 146 -YLVVEQLKERLGANPVPVQLPI 167 (697)
T ss_pred -hhhHHHHHHHhCCCceeeeccc
Confidence 1357788888875432 34453
No 368
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.83 E-value=0.78 Score=41.18 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+++......+....+..+|.+++|..... .++.++...++.+.+. ....+-+|.|+.+......
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~---- 126 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ---- 126 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccc----
Confidence 4678899998643222222222445788888877654 4566666655555432 2234567889988543211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.......++++.++++++.
T Consensus 127 v~~~~~~~~~~~~~~~~~e 145 (211)
T cd04111 127 VTREEAEKLAKDLGMKYIE 145 (211)
T ss_pred cCHHHHHHHHHHhCCEEEE
Confidence 1123456777777766553
No 369
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=94.83 E-value=0.21 Score=42.83 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+...-..+.......+|.+++|...+. .++..+. ..+..+.+. +.++ -+|.|+++...
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~ 116 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPI-ILVGTKLDLRE 116 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEecChhhhh
Confidence 45678999998643211222222445788888876643 4555553 234444432 4554 58889988643
No 370
>PRK05595 replicative DNA helicase; Provisional
Probab=94.83 E-value=0.047 Score=55.10 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.9
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~ 213 (386)
-+.+.++.+|.|||+++.++|..+| ++|++|+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4666679999999999999999877 67999999998764
No 371
>PLN00223 ADP-ribosylation factor; Provisional
Probab=94.83 E-value=1.1 Score=39.06 Aligned_cols=84 Identities=8% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC--CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL--KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l-~~~--~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
+.+.+.|+|+|+......+.......+|.+++|..... .++..+...+..+ .+. ....+-+|.|+.+....
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----
Confidence 45678999998532211121222456789999988754 3455555444333 221 12235689999885321
Q ss_pred ccCCChHHHHHHHhCCC
Q 016622 355 PFGRGSGSQVVQQFGIP 371 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~p 371 (386)
...+++.+.+|+.
T Consensus 134 ----~~~~~~~~~l~l~ 146 (181)
T PLN00223 134 ----MNAAEITDKLGLH 146 (181)
T ss_pred ----CCHHHHHHHhCcc
Confidence 2357778888764
No 372
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.82 E-value=0.37 Score=40.95 Aligned_cols=89 Identities=11% Similarity=0.210 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCCCC-hHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCcCCCCCce
Q 016622 280 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 280 ~yD~VIIDtpp~~~-~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~~~~~~~ 352 (386)
.+.+-|+|+|+... ........+..+|.+++|..... .++..+......+... +.+ +-+|.|+.+......
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 123 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ- 123 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCc-
Confidence 45677999986431 11111222445788888877654 4566666655555542 455 457789988533211
Q ss_pred ecccCCChHHHHHHHhCCCeE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl 373 (386)
........+++.++.+++
T Consensus 124 ---v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 124 ---VSTEEGEKLASELGCLFF 141 (165)
T ss_pred ---cCHHHHHHHHHHcCCEEE
Confidence 111345667777786654
No 373
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=94.80 E-value=0.6 Score=39.66 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCCC-----hH---HHhhhhh-cCCCeEEEEeCCCcc---hHHHHHHHHHHHHcC--CCCeEEEEEcCC
Q 016622 279 GELDYLVIDMPPGTG-----DI---QLTLCQV-VPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 344 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~~---~~~~~~~-~~~d~vviV~~~~~~---s~~~~~~~~~~l~~~--~~~i~gvVlN~~ 344 (386)
..+.+.|+|||+... .. ....... ...|.+++|...... +.......++.+++. +.+++ +|+|++
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi-lv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI-VVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE-EEEEcc
Confidence 356789999986321 00 0011011 124777888766542 334444555555544 55655 888998
Q ss_pred cCC
Q 016622 345 HFD 347 (386)
Q Consensus 345 ~~~ 347 (386)
+..
T Consensus 124 Dl~ 126 (168)
T cd01897 124 DLL 126 (168)
T ss_pred ccC
Confidence 864
No 374
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.78 E-value=0.056 Score=44.32 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=33.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+.+.++ |..|+||||++..++..+...+.++..++++...
T Consensus 20 ~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 356665 9999999999999999998888899999876533
No 375
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.77 E-value=0.22 Score=53.43 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCCh---H-----HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~---~-----~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.++|||+...+ . ......+..+|.+++|+.....-...-....+.+++.+.+++ +|+|+++..
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~~ 396 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDDQ 396 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccc
Confidence 4567889999863211 0 011112345799999988764222222356677777777766 677999853
No 376
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.77 E-value=0.39 Score=40.89 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=35.7
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC------CCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL------KVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l-~~~------~~~i~gvVlN~~~~~ 347 (386)
+-+.++|+|+......+....+..+|.++++..... .++.......+.+ ... +.+++ +|.|+++..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE-EEEECcccc
Confidence 346689997533222222222445788888876643 3444444433322 221 44544 888998864
No 377
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=94.74 E-value=0.034 Score=56.33 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCceEEEEEeC---cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 171 KISNIVAVSSC---KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 171 ~~~kvI~v~s~---kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
..+|.|.|++- .-|+||||++..|+.+|.+.|+++.+. ++.||+.-.||..
T Consensus 52 ~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~---lRePSlGP~fG~K 105 (557)
T PF01268_consen 52 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA---LREPSLGPVFGIK 105 (557)
T ss_dssp ---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE---E----CHHHHCST
T ss_pred CCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE---EecCCCCCccCcc
Confidence 35678888765 459999999999999999999999876 7888887777765
No 378
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=94.74 E-value=0.66 Score=41.50 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~ 347 (386)
..+.+-|.|+++.-....+...-+..+|.+++|...+ ..++..+...++.+++. +.+ +-+|.||++..
T Consensus 47 ~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~ 118 (202)
T cd04120 47 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 3577889999864322222222244678988887654 45777777666666543 344 45888999864
No 379
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.71 E-value=0.69 Score=44.74 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=47.5
Q ss_pred CcEEEEcCCCCCCh-------HHHhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCeEEEEEcCC
Q 016622 281 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (386)
Q Consensus 281 yD~VIIDtpp~~~~-------~~~~~~~~~~~d~vviV~~~~~~----s~~~~~~~~~~l~~~-----~~~i~gvVlN~~ 344 (386)
+.++|+|+|+.... ....+..+..++.+++|+..... .+.+.....+.+... +.++ -+|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~-IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPR-IVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCE-EEEEeCc
Confidence 57899999864311 11112223357889999887643 455555555555433 3444 4889999
Q ss_pred cCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 345 HFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
+...... . ....+++.+.++.+++
T Consensus 284 DL~~~~~-~----~~~~~~l~~~~~~~vi 307 (329)
T TIGR02729 284 DLLDEEE-L----AELLKELKKALGKPVF 307 (329)
T ss_pred cCCChHH-H----HHHHHHHHHHcCCcEE
Confidence 8643210 0 1233445555565554
No 380
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.71 E-value=0.42 Score=40.35 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH-HHHHc---CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV-RMFSK---LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~-~~l~~---~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|...... ++....+.+ ..++. .+.+ +-+|.||++..
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~ 113 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMP 113 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCC
Confidence 356789999996433222222234567999999887653 333333333 23332 2445 45888998853
No 381
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=94.69 E-value=0.051 Score=55.02 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=41.3
Q ss_pred CceEEEEEeC---cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 172 ISNIVAVSSC---KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 172 ~~kvI~v~s~---kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
.+|.|.|++- .-|+||||++..|+.+|.+.|+++.+. ++.||+.-.||.+
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 114 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA---IRQPSGGPTMNIK 114 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE---EecCCcCCcCCcc
Confidence 4577777764 459999999999999999999999876 6788887777654
No 382
>PRK09354 recA recombinase A; Provisional
Probab=94.68 E-value=0.059 Score=52.25 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++-|+ |..|+||||++.+++...++.|.+|++||+.-
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 355555 78999999999999999999999999999864
No 383
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.67 E-value=0.83 Score=39.72 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHH-HHHHHHc--CCCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAK-GVRMFSK--LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~-~~~~l~~--~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|||+......+.......+|.+++|...+. .++..+.. .+..+.. .+.+++ +|.|+.+.........
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~ 125 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIM-LVGLKTDLRKDKNLDR 125 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeChhhhhCccccC
Confidence 34678899998632211222222445788888877543 44555532 2333332 245554 7889988643211111
Q ss_pred ccCCChHHHHHHHhCC-CeE
Q 016622 355 PFGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~-pvl 373 (386)
.......+++++.++. +++
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 126 KVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred CcCHHHHHHHHHHcCCcEEE
Confidence 1122356667777776 443
No 384
>PRK08506 replicative DNA helicase; Provisional
Probab=94.65 E-value=0.056 Score=54.94 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=35.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|.|||+++.++|..+++.|++|+++.+....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 4666679999999999999999999999999999988744
No 385
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.64 E-value=1.1 Score=38.44 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=46.2
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-CCCeEEEEEcCCcCCCCCceecccCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
+.+++.|+++......+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++....... ..
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~----~~ 128 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR----YE 128 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccc----cc
Confidence 456677776432211111112346789999887644 4555555555544332 445 4588899986432111 01
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++++.++.+
T Consensus 129 ~~~~~~~~~~~~~ 141 (169)
T cd01892 129 VQPDEFCRKLGLP 141 (169)
T ss_pred cCHHHHHHHcCCC
Confidence 2356777777753
No 386
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.63 E-value=0.12 Score=49.95 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=34.3
Q ss_pred eEEEEEe-CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s-~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.||+|-+ .-||+|||-++..||..|.++|++|.++-=...+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 4777755 5699999999999999999999999999755433
No 387
>PRK08118 topology modulation protein; Reviewed
Probab=94.62 E-value=0.044 Score=47.50 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=20.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+.|.|+ |-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 467777 899999999999988766
No 388
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.59 E-value=0.81 Score=38.29 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.++|+|+........-..+..+|.+++|..... .++......++.+.+. +.+ +-+|+|+.+......
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~---- 122 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV---- 122 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccC----
Confidence 4567889998632221121122345788888876544 3455555554444433 334 557889988643211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
......+++.+.++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 123 VSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred CCHHHHHHHHHHcCCEEE
Confidence 111234556666776654
No 389
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.57 E-value=0.07 Score=48.71 Aligned_cols=39 Identities=33% Similarity=0.310 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE-EEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVll-ID~D~ 212 (386)
+.+|+|. |..|+||||++..|+..+...+..+.+ +.+|.
T Consensus 33 ~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 33 RTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 3477777 999999999999999999987767666 76665
No 390
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.048 Score=51.66 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=37.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH----CCCcEEEEEcCCCCCCCCccCCCcc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPEN 225 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~----~G~rVllID~D~~~~sl~~~lg~~~ 225 (386)
.|.|.+. |-+|.|||+++-+||+.|.- +-++..+|+.+-.. -.+..|+...
T Consensus 177 NRliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESg 231 (423)
T KOG0744|consen 177 NRLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESG 231 (423)
T ss_pred eeEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhh
Confidence 4677777 88999999999999999982 34678888887533 4555565443
No 391
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.56 E-value=0.057 Score=54.53 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+.+|.+|+||||++..+|..+++.|.+|++++.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 34455599999999999999999999999999999864
No 392
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.54 E-value=0.066 Score=53.99 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=32.9
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+.+|.+|+||||++..+|..++++|.+|++++..-
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34444599999999999999999998899999999864
No 393
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.53 E-value=0.64 Score=40.81 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCeEEEEEcCCcCCCCCce
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~------~~~i~gvVlN~~~~~~~~~~ 352 (386)
.+.+-|+|+|+......+....+..+|.+++|...+ ..++..+...++.+... +.++ -+|.|+++......
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilvgNK~Dl~~~~~- 123 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDKVYERE- 123 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCE-EEEEEChhccccCc-
Confidence 355788999864322122222244568888876643 34556666665555432 3454 47889988643211
Q ss_pred ecccCCChHHHHHHHhCCCeE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl 373 (386)
.......++++.++.+++
T Consensus 124 ---v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 124 ---VSTEEGAALARRLGCEFI 141 (190)
T ss_pred ---cCHHHHHHHHHHhCCEEE
Confidence 111234566677776543
No 394
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.51 E-value=0.08 Score=50.14 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~--G~rVllID~D~~~ 214 (386)
+.+|+|. |..|+||||++..|...+.+. +.+|.++..|...
T Consensus 62 p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3488887 889999999999998888743 4579999888654
No 395
>PLN02759 Formate--tetrahydrofolate ligase
Probab=94.51 E-value=0.075 Score=54.26 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=40.3
Q ss_pred CceEEEEEe---CcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCccCCCc
Q 016622 172 ISNIVAVSS---CKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 172 ~~kvI~v~s---~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
.+|.|.|++ ..-|+||||++..|+.+|.+ .|+++++. ++.||+.-.||..
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK 121 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIK 121 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCcc
Confidence 356666665 45699999999999999997 89999876 7788888777654
No 396
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.50 E-value=0.18 Score=50.45 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCCh-------H----HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGD-------I----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~-------~----~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
...+.|+|||+.... . ......+..+|.+++|.......-..-.+.+..+.+.+.+++ +|+|+++..
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~ 296 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDLV 296 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECcccC
Confidence 346899999862110 0 011223446799999988765433334456666666677755 788998864
No 397
>PRK06749 replicative DNA helicase; Provisional
Probab=94.48 E-value=0.059 Score=54.04 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=35.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|.|||+++.++|..++++|++|+++.+....
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 4566669999999999999999999999999999888744
No 398
>PLN02924 thymidylate kinase
Probab=94.48 E-value=0.079 Score=48.16 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.7
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
.++++.|+|- |--|+||||.+..|+..|..+|++|.++.
T Consensus 13 ~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 13 ESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 3456788888 88999999999999999999999987664
No 399
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.46 E-value=0.047 Score=47.05 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|.++ |..|+||||++..||..+ |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 466666 999999999999999987 43 4456663
No 400
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.43 E-value=0.072 Score=48.42 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||+++..++..+.+.|.++..+++..
T Consensus 44 ~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45555 99999999999999999988999999999865
No 401
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.39 E-value=0.51 Score=39.60 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.1
Q ss_pred EEEEeCcCCCCHHHHHHHHHH
Q 016622 176 VAVSSCKGGVGKSTVAVNLAY 196 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~ 196 (386)
|+++ |..|+||||+.-.|+.
T Consensus 2 i~l~-G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFA-GRSNVGKSSLINALTN 21 (170)
T ss_pred EEEE-cCCCCCHHHHHHHHhc
Confidence 4555 8889999999987764
No 402
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.39 E-value=0.27 Score=51.34 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 282 D~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.|+|||+-.....+.......+|.+++|+.....-.......+..+...+.+++ +++|+++..
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiI-vviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFV-VAANKIDRI 136 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCc
Confidence 47999999532222222222345799999988765323445555666777788854 888999863
No 403
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.38 E-value=0.73 Score=40.86 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=35.2
Q ss_pred CcEEEEcCCCCCCh------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.++.++|+|+ .++ .-+....+..+|.+++|...... ..-...++.+++.+.++ -+|+||++..
T Consensus 52 ~~l~l~DtpG-~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~~~--~~d~~~~~~l~~~~~~~-ilV~nK~D~~ 120 (197)
T cd04104 52 PNVTLWDLPG-IGSTAFPPDDYLEEMKFSEYDFFIIISSTRFS--SNDVKLAKAIQCMGKKF-YFVRTKVDRD 120 (197)
T ss_pred CCceEEeCCC-CCcccCCHHHHHHHhCccCcCEEEEEeCCCCC--HHHHHHHHHHHHhCCCE-EEEEecccch
Confidence 3678888874 321 11111123345777777543322 22245566677767665 4889999864
No 404
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.35 E-value=0.64 Score=39.65 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~-------~~~~i~gvVlN~~~~~~~~ 350 (386)
..+.+.|+|+|+......+.......+|.+++|...+ ..++..+......+.. .+.+ +-+|.|+++....
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 129 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPER- 129 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccc-
Confidence 3567889999853321122222234568888776544 3455555554443322 1344 4488999885421
Q ss_pred ceecccCCChHHHHHHHhCC
Q 016622 351 KRYYPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~ 370 (386)
.......+++++.++.
T Consensus 130 ----~~~~~~~~~~~~~~~~ 145 (170)
T cd04116 130 ----QVSTEEAQAWCRENGD 145 (170)
T ss_pred ----ccCHHHHHHHHHHCCC
Confidence 1111345667777763
No 405
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.52 Score=49.06 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCCCCC------hHHHh--hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTG------DIQLT--LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~------~~~~~--~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
..+++-|+|.|+..+ |...+ ...-.+.|.++-|+++. .++.-..+.-++.+.|.+ +-+.+||+|..+..
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAt--nLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~ 124 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDAT--NLERNLYLTLQLLELGIP-MILALNMIDEAKKR 124 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccc--hHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhc
Confidence 567889999987332 22221 11112357777776554 444444444455678898 45888999865421
Q ss_pred ceecccCCChHHHHHHHhCCCeEEec
Q 016622 351 KRYYPFGRGSGSQVVQQFGIPHLFDL 376 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~pvl~~I 376 (386)
.. +-..+++++.+|+|++..+
T Consensus 125 Gi-----~ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 125 GI-----RIDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred CC-----cccHHHHHHHhCCCEEEEE
Confidence 11 2368899999999998654
No 406
>PRK08727 hypothetical protein; Validated
Probab=94.33 E-value=0.065 Score=49.13 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.|.++ |..|+|||+++..++..+.++|++|.++.++-
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 45555 88999999999999999999999999998753
No 407
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.33 E-value=0.14 Score=54.68 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=32.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.|....|..|+||||++..++...++.|.+|++||+.-
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~ 98 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 44444589999999999999999889999999999864
No 408
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.29 E-value=0.72 Score=40.22 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
.+.+.++|+|+...........+..+|.+++|...... ++......+..+.+ .+.++ -++.||++..
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pv-ivv~NK~Dl~ 133 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPF-LILGNKIDLP 133 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCE-EEEEeCCCCC
Confidence 45678899875322211112223456888888776543 34434433333322 23554 4788999853
No 409
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.29 E-value=0.071 Score=50.99 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=33.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+-+.++ |..|+|||.++..+|..++++|++|.++.+.
T Consensus 156 ~~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3456666 8899999999999999999999999999763
No 410
>PRK08181 transposase; Validated
Probab=94.29 E-value=0.068 Score=50.10 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+-+.++ |..|+|||.++..+|..+.++|++|+++.+
T Consensus 107 ~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 456666 899999999999999999999999999976
No 411
>PRK08760 replicative DNA helicase; Provisional
Probab=94.27 E-value=0.067 Score=54.39 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=34.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|+|||+++.++|...+ +.|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 4556669999999999999999988 469999999988744
No 412
>PRK05642 DNA replication initiation factor; Validated
Probab=94.27 E-value=0.067 Score=49.09 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||.++..++..+.++|++|++++++-
T Consensus 47 ~l~l~-G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 47 LIYLW-GKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 44455 99999999999999999988899999999864
No 413
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.26 E-value=0.18 Score=44.77 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=39.2
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
+.+.|+|+|+......+.......+|.+++|..... .++..+......+.+ .+.++ -+|.|+.+..
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~ 117 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPI-VVVGNKADSL 117 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEccccc
Confidence 567899998543322222222446789999887654 355556555444332 34554 4788998864
No 414
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=94.26 E-value=0.89 Score=38.79 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+-|+|+|+......+....+..++.+++|... +..++.........+.+ .+.+++ ++.|+.+.......
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~~~~~~~-- 124 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADLEDDRQV-- 124 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhccccCcc--
Confidence 35678889985322111212223345777666544 34456666554444432 356655 67899875432111
Q ss_pred ccCCChHHHHHHHhC-CCeE
Q 016622 355 PFGRGSGSQVVQQFG-IPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g-~pvl 373 (386)
.......+.+.++ ++++
T Consensus 125 --~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04177 125 --SREDGVSLSQQWGNVPFY 142 (168)
T ss_pred --CHHHHHHHHHHcCCceEE
Confidence 1123345556666 4544
No 415
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.21 E-value=0.88 Score=38.23 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l-~~---~~~~i~gvVlN~~~~~ 347 (386)
.+.+.++|+|+...........+..+|.+++|...... ++......+..+ +. .+.+ +-+|+|+++..
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLP 114 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccc
Confidence 46789999985332212222224457888888876543 345554444333 22 2445 45889998853
No 416
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.12 E-value=0.32 Score=42.95 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=58.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
+..|.|. +-.|+|||++...+-..|..+ +++.+|..|.+...-..++ ... .+..++....
T Consensus 13 ~~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l----------------~~~--~g~~i~~v~T 72 (202)
T COG0378 13 MLRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRL----------------RKL--PGEPIIGVET 72 (202)
T ss_pred eEEEEec-CCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHH----------------HhC--CCCeeEEecc
Confidence 3577776 889999999999999999887 9999999998762211111 000 1222222111
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGT 292 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~ 292 (386)
+... -....+....++++.... ...|++||...+.+
T Consensus 73 -G~~C-H~da~m~~~ai~~l~~~~--~~~Dll~iEs~GNL 108 (202)
T COG0378 73 -GKGC-HLDASMNLEAIEELVLDF--PDLDLLFIESVGNL 108 (202)
T ss_pred -CCcc-CCcHHHHHHHHHHHhhcC--CcCCEEEEecCcce
Confidence 1111 123344556677776543 23799999987633
No 417
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=94.09 E-value=1 Score=41.44 Aligned_cols=69 Identities=20% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCCC----h--H--HH-----hhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 016622 280 ELDYLVIDMPPGTG----D--I--QL-----TLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (386)
Q Consensus 280 ~yD~VIIDtpp~~~----~--~--~~-----~~~~~~-~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~~~i~gvVlN~~ 344 (386)
..|+.|||+|+-.. + . .. ....+. ..+.+++|+.... ..-.+..++.+.++..+.+.++| +||+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~V-iTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGV-ITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEE-EECC
Confidence 48999999997431 1 0 00 111122 2345566664432 23345678888888888887755 4998
Q ss_pred cCCCC
Q 016622 345 HFDAD 349 (386)
Q Consensus 345 ~~~~~ 349 (386)
+....
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 86543
No 418
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.08 E-value=0.095 Score=51.87 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=34.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+-+|+|. |..|+||||++..|...+...|.++..|..|-..
T Consensus 212 PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 212 PLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4567776 8899999999999998888778899999887543
No 419
>PLN03108 Rab family protein; Provisional
Probab=94.05 E-value=0.36 Score=43.33 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceeccc
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
+.+-|+|+++......+.......+|.+++|...... ++..+...+..+.+. +.++ -+|.|+.+...... .
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pi-iiv~nK~Dl~~~~~----~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAHRRA----V 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccCccccC----C
Confidence 4567888875332222222224456888888776543 445444444433322 3444 47889988643211 1
Q ss_pred CCChHHHHHHHhCCCeE
Q 016622 357 GRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl 373 (386)
.....+++++.++++++
T Consensus 130 ~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 130 STEEGEQFAKEHGLIFM 146 (210)
T ss_pred CHHHHHHHHHHcCCEEE
Confidence 11345667777776654
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.03 E-value=0.082 Score=47.42 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=29.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+.+|+|+ |..|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 3577777 89999999999999987754 45667766654
No 421
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.99 E-value=2.7 Score=34.65 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=35.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l-~~---~~~~i~gvVlN~~~~~ 347 (386)
.+.+.++|+|+...........+..+|.+++|..... .+.......+..+ .. .+.++ -+|.|+.+..
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~ 114 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPL-LVLGNKNDLP 114 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCE-EEEEeCcccc
Confidence 4567888988532211111122345688888877654 3333333333332 21 24554 4788998853
No 422
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.99 E-value=0.094 Score=52.71 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=34.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~ 214 (386)
-+.+.++.+|+|||+++.++|..++. .|++|+++.++...
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 45566699999999999999999885 69999999998744
No 423
>PRK04040 adenylate kinase; Provisional
Probab=93.98 E-value=0.081 Score=46.85 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rV 205 (386)
+++|+|+ |..|+||||++..|+..+. .|.++
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 4677777 8999999999999999885 24444
No 424
>PRK03003 GTP-binding protein Der; Reviewed
Probab=93.98 E-value=0.24 Score=50.36 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=28.9
Q ss_pred hcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 302 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 302 ~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+..+|.+++|...... +..+. +.+..+...+.+++ +|+||++..
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~piI-iV~NK~Dl~ 335 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRALV-LAFNKWDLV 335 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCEE-EEEECcccC
Confidence 3467899999887653 33333 45556666666654 788998864
No 425
>PRK08006 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.091 Score=53.32 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=34.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|.|||+++.|+|..+| +.|++|+++.+....
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4556669999999999999999998 469999999888644
No 426
>PRK07933 thymidylate kinase; Validated
Probab=93.96 E-value=0.1 Score=47.09 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=31.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.|+|- |--|+||||++..|+..|..+|++|.++.-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56666 7789999999999999999999999998764
No 427
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=93.95 E-value=0.44 Score=41.81 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCC-CcchHHHHHH-HHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAK-GVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~-~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+++.|+|+++......+.......+|.+++|... +..++..+.. .+..+.+. +.+ +-+|.|+++...
T Consensus 46 ~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~ 118 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLRE 118 (189)
T ss_pred EEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 346788999986432111111123356788777554 3345655542 34444432 444 558899988643
No 428
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.057 Score=53.07 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=41.1
Q ss_pred CceEEEEEeCc---CCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 172 ~~kvI~v~s~k---GGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
.+|.|.|++-. -|+||||++..|+.+|.+.|+++.+- .+.||+.-.||..
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~a---lRePSlGP~fGiK 103 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAIIA---LREPSLGPVFGIK 103 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheEE---eccCCcCCccccc
Confidence 46788877654 49999999999999999999998865 6778887777654
No 429
>COG1084 Predicted GTPase [General function prediction only]
Probab=93.92 E-value=0.55 Score=44.71 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCCh-------HHH-hhhhhc-CCCeEEEEeCCCcchHHHHHHHHHHHHcC----CCCeEEEEEcCCc
Q 016622 279 GELDYLVIDMPPGTGD-------IQL-TLCQVV-PLTAAVIVTTPQKLAFIDVAKGVRMFSKL----KVPCIAVVENMCH 345 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-------~~~-~~~~~~-~~d~vviV~~~~~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~ 345 (386)
+.+.+=+||||+-++- ... ++.++. -.+.++++.+|+..+...+..-..++++. + ..+-+|+|+.+
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D 291 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKID 291 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 4557889999976541 100 111111 13778889999988766666555555442 3 44668999988
Q ss_pred CC
Q 016622 346 FD 347 (386)
Q Consensus 346 ~~ 347 (386)
..
T Consensus 292 ~~ 293 (346)
T COG1084 292 IA 293 (346)
T ss_pred cc
Confidence 54
No 430
>PF13173 AAA_14: AAA domain
Probab=93.92 E-value=0.089 Score=43.26 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++++++ |.-|+||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 466666 7779999999999998887 56789999988543
No 431
>PRK06893 DNA replication initiation factor; Validated
Probab=93.88 E-value=0.089 Score=48.07 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=32.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+.++ |..|+|||+++..+|..+.++|.+|.+++++
T Consensus 41 ~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 44555 9999999999999999999999999999985
No 432
>PRK06921 hypothetical protein; Provisional
Probab=93.88 E-value=0.11 Score=48.74 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~ 210 (386)
...+.++ |..|+|||+++..+|..+.++ |++|+++.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3467776 889999999999999999987 999999875
No 433
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=93.87 E-value=0.16 Score=48.49 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=49.4
Q ss_pred EEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 283 YLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 283 ~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
|-=+|||+-.+-.--.+......|+.|+|+.+.......++..+-+.++.|++.+-+.+|+++...
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC
Confidence 445799853222222233344569999999988888889999999999999999999999998653
No 434
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=93.87 E-value=2 Score=39.80 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=33.6
Q ss_pred eEEEEEeC-cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 174 kvI~v~s~-kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
|-|.|++| -.|.||=.+|+.++..|..+|++|.++.+||+-+-
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNv 45 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNV 45 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccccc
Confidence 56777755 47999999999999999999999999999997543
No 435
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=93.86 E-value=0.98 Score=38.81 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l-~~~---~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+......+....+..+|.+++|...... ++.++.+.+..+ .+. +.+ +-+|.|+++..
T Consensus 51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 123 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLP 123 (168)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCc
Confidence 356789999985432222222224567999999887653 455555544333 221 344 56899999853
No 436
>PF05729 NACHT: NACHT domain
Probab=93.83 E-value=0.075 Score=45.06 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=23.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G 202 (386)
++.|+ |.+|+||||++..++..++..+
T Consensus 2 ~l~I~-G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWIS-GEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEE-CCCCCChHHHHHHHHHHHHhcC
Confidence 44454 9999999999999999999765
No 437
>PRK11058 GTPase HflX; Provisional
Probab=93.82 E-value=0.83 Score=45.81 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=36.1
Q ss_pred cEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcch-HHHH---HHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 282 DYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLA-FIDV---AKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 282 D~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s-~~~~---~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.++|+||++.... ...+......+|.+++|+...... .... .+.++.+...+.+++ +|+||++..
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccCC
Confidence 5788898864221 111112234578888888875542 2333 233444433345555 788999863
No 438
>PF12846 AAA_10: AAA-like domain
Probab=93.80 E-value=0.089 Score=49.41 Aligned_cols=35 Identities=40% Similarity=0.485 Sum_probs=30.9
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++|+ |+.|+||||+..++...+...|.+++++|..
T Consensus 4 ~~i~-G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 4 TLIL-GKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3444 9999999999999999999999999999754
No 439
>PTZ00035 Rad51 protein; Provisional
Probab=93.79 E-value=0.11 Score=50.51 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=30.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.++.|+ |..|+||||++..|+..... .+.+|++||..-
T Consensus 119 ~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 119 SITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred eEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 455555 89999999999999877652 467999999864
No 440
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=93.76 E-value=0.42 Score=45.80 Aligned_cols=41 Identities=34% Similarity=0.561 Sum_probs=34.9
Q ss_pred eEEEEEe-CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s-~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.||+|-+ .-||.|||-++..||..|.++|.++.++.=...+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4777755 4699999999999999999999999999876544
No 441
>PRK06547 hypothetical protein; Provisional
Probab=93.75 E-value=0.085 Score=46.02 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=26.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+.+|+|. |..|+||||++..|+..+ | +.++++|-.
T Consensus 14 ~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 14 GMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 34577777 899999999999998864 3 445566643
No 442
>PLN02796 D-glycerate 3-kinase
Probab=93.74 E-value=0.11 Score=50.21 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=32.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
-+|+|. |..|+||||++..|+..+...|.++..|-.|-
T Consensus 101 liIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 101 LVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred EEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 467776 88999999999999999987788888887764
No 443
>PRK05748 replicative DNA helicase; Provisional
Probab=93.72 E-value=0.1 Score=52.71 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=34.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 215 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~ 215 (386)
-+.+.++.+|.|||+++.++|...+ +.|++|+++.+.....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 4555669999999999999999988 5699999999887543
No 444
>PRK08840 replicative DNA helicase; Provisional
Probab=93.68 E-value=0.11 Score=52.64 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=34.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|.|||+++.|+|...| ++|++|+++.+....
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 5556669999999999999999998 569999999988643
No 445
>PRK06904 replicative DNA helicase; Validated
Probab=93.65 E-value=0.11 Score=52.90 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=34.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~ 214 (386)
-+.|.++.+|+|||+++.|+|...|. .|++|+++-+....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 45566699999999999999999884 69999999888643
No 446
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=93.60 E-value=0.1 Score=53.13 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=40.0
Q ss_pred CceEEEEEe---CcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 172 ISNIVAVSS---CKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 172 ~~kvI~v~s---~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
.+|.|.|++ ..-|+||||++..|+.+|. +.|+++.+. ++.||+.-.||..
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK 120 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC---IRQPSQGPTFGIK 120 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE---EecCCcCCcCCcc
Confidence 356776665 4559999999999999999 789999876 6778887777654
No 447
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=93.59 E-value=0.73 Score=38.26 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCCCChH--------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.+.++|||+..... .........+|.+++|.......-..-.+.+.. ..+.+ +-+|+|+.+..
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLL 120 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcC
Confidence 45678999998632110 011122345788888888774222222222222 23444 45888998854
No 448
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.58 E-value=0.095 Score=55.35 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=38.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
++++|.++ |..|+||||+|..|+..|...|..+.++|.|..+..+
T Consensus 459 ~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 459 KPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 45677776 9999999999999999998889999999999866443
No 449
>PRK06761 hypothetical protein; Provisional
Probab=93.57 E-value=0.098 Score=49.30 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=31.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE-EEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVll-ID~D~ 212 (386)
+++|.|. |..|+||||++..|+..|...|.++-. .+.|.
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3566666 889999999999999999888888875 55554
No 450
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=93.56 E-value=1.4 Score=41.61 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhc--------CCCeEEEEeCCC
Q 016622 265 VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--------PLTAAVIVTTPQ 315 (386)
Q Consensus 265 ~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~--------~~d~vviV~~~~ 315 (386)
.-++++++.+ +.++||+|++.|.+-..+..+.-..+. ..|+++-|+.+.
T Consensus 132 gvraie~lvq--kkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K 188 (391)
T KOG2743|consen 132 GVRAIENLVQ--KKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAK 188 (391)
T ss_pred HHHHHHHHHh--cCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehh
Confidence 3467788877 348999999999854333222111111 257888887653
No 451
>PRK08116 hypothetical protein; Validated
Probab=93.55 E-value=0.12 Score=48.42 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=31.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
-+.++ |..|+|||.++..+|..+.++|++|+++++.
T Consensus 116 gl~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 116 GLLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 35555 8899999999999999999889999999753
No 452
>PRK07261 topology modulation protein; Provisional
Probab=93.54 E-value=0.094 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.|+|+ |.+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46777 899999999999987654
No 453
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=93.54 E-value=0.76 Score=48.03 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 282 D~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.|+|||+--....+.......+|.+++|+..+..-.......++.++..+.+++ +++|+++..
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiI-Vv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFV-VAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 48999999632222222222345799999988764322334455566677788754 888999864
No 454
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=93.52 E-value=1.8 Score=43.28 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCC---h----HHHhhhhhcCCCeEEEEeCCCc----chHHHHHHHHHHHHcC-----CCCeEEEEEcC
Q 016622 280 ELDYLVIDMPPGTG---D----IQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKL-----KVPCIAVVENM 343 (386)
Q Consensus 280 ~yD~VIIDtpp~~~---~----~~~~~~~~~~~d~vviV~~~~~----~s~~~~~~~~~~l~~~-----~~~i~gvVlN~ 343 (386)
.+.++|+|+|+-.. . ....+..+..++.+++|+.... ....+.....+.|... +.+ .-+|+|+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK 283 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANK 283 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeC
Confidence 45789999986321 0 1111222345788888888743 3455555655555542 344 4489999
Q ss_pred CcC
Q 016622 344 CHF 346 (386)
Q Consensus 344 ~~~ 346 (386)
++.
T Consensus 284 ~DL 286 (424)
T PRK12297 284 MDL 286 (424)
T ss_pred CCC
Confidence 985
No 455
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=93.51 E-value=0.78 Score=39.76 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHH-HHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAK-GVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~-~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+++.-....+.......+|.+++|.... ..++..+.. .+..+++. +.++ -+|.|+++..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl~ 118 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQIDLR 118 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhh
Confidence 3577889999864322112212244678888887643 345666643 44444432 4444 5899998853
No 456
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=93.51 E-value=1.4 Score=37.49 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+++.|+|+|+...........+..+|.+++|.... ..++..+. .....+++. +.+ +-+|.|+++...
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccc
Confidence 5678999999854322111122245678888887654 34555543 233444432 444 457889988643
No 457
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.50 E-value=0.13 Score=50.01 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.|.-..|..|+|||+++.+||...+. .+.+|++||..-
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 55555599999999999999976652 136999999964
No 458
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.50 E-value=0.098 Score=45.21 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=27.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|++.|.++ |-.|+||||++..||..+ |. -++|.|.
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~ 35 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQ 35 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccH
Confidence 34567776 899999999999999877 54 3578775
No 459
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=93.45 E-value=0.37 Score=39.08 Aligned_cols=69 Identities=10% Similarity=-0.015 Sum_probs=39.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH-HHHHHH----HHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-IDVAKG----VRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~-~~~~~~----~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+++.++|+|+..............+|.+++|........ ...... .......+.++ -+|+|+++...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nk~D~~~ 116 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI-ILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE-EEEEecccccc
Confidence 46789999998633222222223445788888887766432 333222 22223345554 47789988654
No 460
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.44 E-value=2.5 Score=38.36 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~ 347 (386)
..|++.|+|+++.-....+.......+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~ 113 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLT 113 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 45788999998643322222222445788888877554 4666665544444332 233 55899998864
No 461
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=93.43 E-value=0.57 Score=42.36 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+-|+|+++.-....+.......+|.+++|..... .++..+...++.+.+. +.+ +-+|.|+.+..
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~ 130 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 130 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhh
Confidence 34678899998533211111111345677787766544 4566666555555432 344 45888998853
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.093 Score=45.37 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=18.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLA 195 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA 195 (386)
.|+|+ |-+|+||||++-.|+
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH
Confidence 68888 899999999998887
No 463
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.37 E-value=0.18 Score=49.52 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=33.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
-+|+|+ |..|+||||++..|...|..+ ++|.++.-+.
T Consensus 6 ~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~ 42 (369)
T PRK14490 6 FEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHGC 42 (369)
T ss_pred EEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCC
Confidence 489998 778999999999999999988 9999998644
No 464
>PTZ00301 uridine kinase; Provisional
Probab=93.37 E-value=0.21 Score=45.02 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=30.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH-CC-CcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~-~G-~rVllID~D~~~ 214 (386)
.+|+|+ |-.|+||||+|..|+..+.. .| ..|.++-.|-+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 478887 88899999999999988854 34 346677777654
No 465
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.36 E-value=0.12 Score=53.72 Aligned_cols=41 Identities=34% Similarity=0.383 Sum_probs=35.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~ 214 (386)
+.+|.++ |..|+||||++..||..|.. .|.++.++|.|.-+
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 4577776 99999999999999999986 78889999999654
No 466
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=93.35 E-value=1.1 Score=44.28 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=36.9
Q ss_pred cEEEEcCCCCCCh-------HHHhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCeEEEEEcCCc
Q 016622 282 DYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMCH 345 (386)
Q Consensus 282 D~VIIDtpp~~~~-------~~~~~~~~~~~d~vviV~~~~----~~s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~ 345 (386)
.++++|+|+-... ....+..+..+|.+++|+... .....+.....+.+.+. +.+ .-+|+|+++
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiD 286 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKID 286 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCc
Confidence 4889999863321 011122344578888888654 23445555555555543 344 447889988
Q ss_pred CC
Q 016622 346 FD 347 (386)
Q Consensus 346 ~~ 347 (386)
..
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 53
No 467
>PRK06321 replicative DNA helicase; Provisional
Probab=93.34 E-value=0.13 Score=52.09 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=34.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.|.++.+|+|||+++.++|..+| +.|++|+++.+....
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4556669999999999999999998 569999999888744
No 468
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.32 E-value=1.9 Score=39.24 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHH-HHHHcC--CCCeEEEEEcCCcCCCCCc---
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSKL--KVPCIAVVENMCHFDADGK--- 351 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~-~~l~~~--~~~i~gvVlN~~~~~~~~~--- 351 (386)
..+.+-|+||++......+.......+|.+++|..... .++..+...+ ..++.. +.+ +-+|.|+++......
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~ 125 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLR 125 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhh
Confidence 45678899998643222222222446788888877554 4566664332 233322 444 448889998643210
Q ss_pred -----eecccCCChHHHHHHHhCC-CeEE
Q 016622 352 -----RYYPFGRGSGSQVVQQFGI-PHLF 374 (386)
Q Consensus 352 -----~~~~~~~~~~~~i~~~~g~-pvl~ 374 (386)
..........+.+++.+|. +++.
T Consensus 126 ~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 126 ELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred hhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 0011223456777778774 5554
No 469
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.31 E-value=0.55 Score=39.63 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+-|+|+++......+.......+|.++++... +..++..+...+..+.... ...+.+|.|+.+..... .
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~ 121 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----E 121 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc----c
Confidence 567788999875432222222334567888887654 4456777777777665543 24677888998865411 1
Q ss_pred cCCChHHHHHHHhCCCeEEe
Q 016622 356 FGRGSGSQVVQQFGIPHLFD 375 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~~ 375 (386)
......+++++.++.+++..
T Consensus 122 v~~~~~~~~~~~~~~~~~e~ 141 (162)
T PF00071_consen 122 VSVEEAQEFAKELGVPYFEV 141 (162)
T ss_dssp SCHHHHHHHHHHTTSEEEEE
T ss_pred chhhHHHHHHHHhCCEEEEE
Confidence 12235678888888777653
No 470
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.31 E-value=0.13 Score=47.25 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||+++..++..+.+.|++|.++.++.
T Consensus 47 ~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45555 89999999999999999998999999999975
No 471
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.26 E-value=0.24 Score=42.19 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHH-HHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAK-GVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~-~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.++|+|+...........+..+|.+++|...+. .+...... .+..+... +.+ +-+|.|+++...
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 118 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRD 118 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhh
Confidence 46778999998643211111112345788888888765 44444333 23333332 344 458889988543
No 472
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.24 E-value=0.13 Score=46.13 Aligned_cols=34 Identities=44% Similarity=0.492 Sum_probs=25.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|+.+|++| |+.|+||||++- .|++.|..| ||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~----~~~~~G~~v--idaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAK----ILAELGFPV--IDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHH----HHHHcCCeE--EEccH
Confidence 56799999 999999999875 444556655 67764
No 473
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.23 E-value=0.19 Score=44.59 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
++.|+|. |--|+||||++..|+..|...|+.+...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 3577777 8899999999999999999888776654
No 474
>PRK06851 hypothetical protein; Provisional
Probab=93.22 E-value=0.34 Score=47.44 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=37.4
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
....+++.++ |..|+||||+...++..+.++|++|.+.=|-..-.++
T Consensus 211 ~~~~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 211 EGVKNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred cccceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 3445666666 9999999999999999999999999999775433334
No 475
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.16 E-value=1.1 Score=38.20 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHH-HHHHHHc--CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAK-GVRMFSK--LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~-~~~~l~~--~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+||++.-.-.......+..+|.+++|...+ ..++..+.. ....+++ .+.++ -+|.|+.+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 118 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLR 118 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeeChhcc
Confidence 3567889999853211111111234567777765544 334444432 3334443 24554 4888998853
No 476
>COG2229 Predicted GTPase [General function prediction only]
Probab=93.14 E-value=3.2 Score=36.28 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCCCh-HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~-~~i~gvVlN~~~~~ 347 (386)
+++-+=++|||+-.-- ..+.. ....++++++++.....--..+..+++.+.... ++ +.|..|+.+..
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~-l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~ 134 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEI-LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLF 134 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHH-HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccC
Confidence 4466677777753211 11111 122356666666655544447788888887776 55 45777887743
No 477
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.11 E-value=0.53 Score=50.46 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCC-------ChHHH----hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGT-------GDIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~-------~~~~~----~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
...++.++|||+.. +.... ....+..+|.+++|.......-..-.+.+..+.+.+.+++ +|+||.+..
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL~ 574 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDLM 574 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhcC
Confidence 44568899998521 11111 1122345788999887765422222345556666677755 888998853
No 478
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.11 E-value=0.094 Score=46.37 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=25.7
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
|+|. |..|+||||+|..|+..+. .+.+|..|-.
T Consensus 2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 5665 8999999999999998862 4677777643
No 479
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.10 E-value=0.17 Score=43.96 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=26.0
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
|.+| |+.|+||||+...+...|...|.+|.-+
T Consensus 2 i~iT-G~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 2 IFIT-GPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEEE-S-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEEE-CcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 4555 9999999999999999999888777544
No 480
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.09 E-value=0.12 Score=45.84 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
||++|+++ |.-|+||||++..|+. .|. -++|+|.-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 45688888 8889999999987765 365 56888863
No 481
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=93.08 E-value=0.12 Score=52.51 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.++|||||+ ..+. ......+..+|.+++|+.....-.....+....+...+.+.+-+++||++..
T Consensus 105 ~~~~i~~iDTPG-h~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPG-HEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCC-cHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 577899999996 3322 1122334567999999887654333345555666666766566899999864
No 482
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.34 Score=40.46 Aligned_cols=59 Identities=14% Similarity=0.337 Sum_probs=45.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEe--c---CC--CeEEEEEEeCCCCCCchHHH
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN--E---AL--GEVSFRLELTTPACPIKDMF 131 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~--~---~~--~~v~v~l~lt~~~cp~~~~i 131 (386)
.....+.+.+.++.|+|||-+..+-+|+.|+.-.++ + .. .-|.|.+++|-|.|+++-.|
T Consensus 32 ~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlI 97 (161)
T KOG3381|consen 32 DSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLI 97 (161)
T ss_pred cchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEEEEEeccCCCcchHHhhh
Confidence 455777899999999999999988888888654443 2 11 25889999999999977544
No 483
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.06 E-value=0.17 Score=45.13 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=27.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+..+ .|..|+||||+...++..+...|++|+++-
T Consensus 20 ~~~l-~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 20 VSVL-QGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp EEEE-EESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEE-EECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4445 488999999999999999999999999884
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.05 E-value=0.11 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=26.3
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHH--------HHCCCcEEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 209 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~L--------a~~G~rVllID 209 (386)
+.+..|-+|+||||+.+.++..+ ...+.+++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67777999999999999999988 46788888875
No 485
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.04 E-value=0.59 Score=40.02 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+.++|+++.-....+.-.....+|.+++|..... .++..+...++.+.+. +.++ -+|.|+++..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-iiv~nK~Dl~ 117 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPI-VLCGNKVDIK 117 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhcc
Confidence 45778899998532111111122345788888877654 3555565555555443 4555 4888999864
No 486
>PRK09165 replicative DNA helicase; Provisional
Probab=93.03 E-value=0.15 Score=52.16 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=33.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC---------------CCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~---------------G~rVllID~D~~~ 214 (386)
-+.+.++.+|.||||++.++|...|+. |++|+++-+....
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 455666999999999999999999853 7899999887754
No 487
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.02 E-value=0.17 Score=41.18 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=25.4
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++ |..|+||||++..+|..+ |..++-+|+..
T Consensus 2 ll~-G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 2 LLH-GPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp EEE-SSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred EEE-CcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 344 889999999999999987 56777776653
No 488
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.01 E-value=0.11 Score=49.43 Aligned_cols=36 Identities=25% Similarity=0.165 Sum_probs=27.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+++|.+ .|..|+||||+|..|+..+. ....+|.|..
T Consensus 2 ~~liil-~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILT-VGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred cEEEEE-EcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 345555 59999999999999988762 4678887764
No 489
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.99 E-value=0.092 Score=43.65 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.3
Q ss_pred EEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 177 ~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+..|..|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 34459999999999988876553 67788886
No 490
>PRK13946 shikimate kinase; Provisional
Probab=92.99 E-value=0.13 Score=45.26 Aligned_cols=33 Identities=42% Similarity=0.476 Sum_probs=26.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|.++ |..|+||||++..||..| |.+ ++|.|.
T Consensus 11 ~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 467777 889999999999999888 555 577774
No 491
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.99 E-value=0.15 Score=48.75 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=30.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.++-|+ |..|+|||+++.++|...+. .+.+|++||+.-
T Consensus 96 ~i~ei~-G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVF-GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 455555 99999999999999988763 234999999975
No 492
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.98 E-value=0.52 Score=41.38 Aligned_cols=34 Identities=38% Similarity=0.551 Sum_probs=28.3
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
|.|. .-.|-||||-|..+|....-+|+||+++-.
T Consensus 31 i~V~-TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 31 IIVF-TGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEEE-ecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 3343 456899999999999999999999999854
No 493
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=92.93 E-value=1.4 Score=42.92 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCCh---H-----HHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~---~-----~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~ 347 (386)
...+.|+||++...+ . ..+...+..+|.+++|+..... .........+.+++. +.++ -+|+|+++..
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~pi-IlV~NK~Dl~ 314 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQ-LLVYNKIDLL 314 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCE-EEEEEeecCC
Confidence 456889999864221 0 1111224457999999876543 333333333444443 4454 4899999863
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.93 E-value=0.11 Score=43.88 Aligned_cols=32 Identities=41% Similarity=0.417 Sum_probs=24.8
Q ss_pred EEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 178 v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+..|..|+||||+|..|+..+ | ..++|.|...
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 445999999999999998874 3 3567887655
No 495
>PRK05636 replicative DNA helicase; Provisional
Probab=92.88 E-value=0.17 Score=51.77 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~~ 214 (386)
-+.+.++.+|+|||+++.++|...+ +.|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 4556669999999999999999888 568999999887644
No 496
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.1 Score=44.68 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+|+| ||++|+||||+|..||..+
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHh
Confidence 4555 5999999999999999877
No 497
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=92.79 E-value=2.2 Score=37.39 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=53.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCCCCC----
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDADG---- 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~~~~---- 350 (386)
..+.+-|.||++.-....+.......+|.+++|...+. .++..+ ...++.+++. +.+ +-+|.|+++.....
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~ 129 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLV 129 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHH
Confidence 34678899998542211222222445788888876543 566665 4555555443 344 45889999864210
Q ss_pred ----ceecccCCChHHHHHHHhCC-CeEE
Q 016622 351 ----KRYYPFGRGSGSQVVQQFGI-PHLF 374 (386)
Q Consensus 351 ----~~~~~~~~~~~~~i~~~~g~-pvl~ 374 (386)
.+........++++++.+|. +++.
T Consensus 130 ~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 158 (182)
T cd04172 130 ELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 00011233567888888885 5553
No 498
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.76 E-value=0.13 Score=45.85 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=30.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl 217 (386)
+++.|++|-+|+||||++..+...+. +...+.||.|.....+
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFH 56 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGS
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhc
Confidence 47777779999999999998877665 6788999999865433
No 499
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.68 E-value=0.14 Score=41.78 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=29.9
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-----CCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-----G~rVllID~D~~~ 214 (386)
.+.+..|..|+|||+++.+++..+... ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 344555999999999999999999864 6788888876544
No 500
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.66 E-value=0.12 Score=41.80 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=18.1
Q ss_pred EeCcCCCCHHHHHHHHHHHH
Q 016622 179 SSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 179 ~s~kGGvGKTTla~~LA~~L 198 (386)
.+|..|+||||++..|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 34899999999999999998
Done!