Query 016622
Match_columns 386
No_of_seqs 437 out of 2597
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ph1_A Nucleotide-binding prot 100.0 1.2E-30 4E-35 242.7 21.5 217 167-385 12-235 (262)
2 3ea0_A ATPase, para family; al 100.0 9.4E-29 3.2E-33 226.8 15.6 199 171-385 2-215 (245)
3 1g3q_A MIND ATPase, cell divis 100.0 2.2E-28 7.5E-33 223.4 17.9 199 172-385 1-206 (237)
4 3q9l_A Septum site-determining 100.0 2E-28 6.7E-33 226.6 14.4 202 172-385 1-220 (260)
5 3fwy_A Light-independent proto 99.9 5.6E-27 1.9E-31 223.0 20.3 200 172-385 47-260 (314)
6 1hyq_A MIND, cell division inh 99.9 1.1E-27 3.7E-32 222.4 15.0 198 172-385 1-205 (263)
7 3k9g_A PF-32 protein; ssgcid, 99.9 2.4E-27 8.2E-32 220.7 14.3 202 171-386 25-240 (267)
8 3la6_A Tyrosine-protein kinase 99.9 1.7E-26 5.9E-31 217.1 16.0 173 171-350 90-270 (286)
9 3end_A Light-independent proto 99.9 6.4E-26 2.2E-30 215.5 19.1 198 170-385 38-253 (307)
10 3kjh_A CO dehydrogenase/acetyl 99.9 1.6E-26 5.6E-31 212.2 13.9 194 175-385 2-224 (254)
11 1wcv_1 SOJ, segregation protei 99.9 4.8E-27 1.7E-31 217.6 9.2 198 171-385 4-215 (257)
12 4dzz_A Plasmid partitioning pr 99.9 8E-26 2.7E-30 201.6 14.5 169 173-385 1-175 (206)
13 1cp2_A CP2, nitrogenase iron p 99.9 5.2E-26 1.8E-30 211.7 13.3 202 173-385 1-217 (269)
14 3bfv_A CAPA1, CAPB2, membrane 99.9 6.8E-26 2.3E-30 211.6 13.5 171 172-349 81-259 (271)
15 2afh_E Nitrogenase iron protei 99.9 1.2E-25 4E-30 211.8 13.9 200 173-385 2-220 (289)
16 3cio_A ETK, tyrosine-protein k 99.9 2E-25 6.9E-30 211.3 14.0 171 172-349 103-281 (299)
17 2oze_A ORF delta'; para, walke 99.9 2.7E-25 9.3E-30 210.1 11.5 204 172-385 33-260 (298)
18 3ez9_A Para; DNA binding, wing 99.9 9.5E-26 3.3E-30 222.4 7.8 206 171-385 109-355 (403)
19 3pg5_A Uncharacterized protein 99.9 8.1E-25 2.8E-29 212.6 14.1 174 173-348 1-256 (361)
20 3ez2_A Plasmid partition prote 99.9 5.5E-26 1.9E-30 223.7 5.5 206 171-385 106-352 (398)
21 3fkq_A NTRC-like two-domain pr 99.9 6.4E-25 2.2E-29 214.3 9.0 197 171-383 141-354 (373)
22 3ug7_A Arsenical pump-driving 99.9 3.2E-24 1.1E-28 207.4 12.1 202 171-381 23-317 (349)
23 3zq6_A Putative arsenical pump 99.9 4.1E-24 1.4E-28 204.7 10.1 206 173-380 13-301 (324)
24 2xj4_A MIPZ; replication, cell 99.9 2.8E-25 9.6E-30 209.1 1.6 197 172-385 3-227 (286)
25 3cwq_A Para family chromosome 99.9 2E-23 6.8E-28 187.5 11.5 162 174-385 1-166 (209)
26 2woj_A ATPase GET3; tail-ancho 99.9 3.6E-23 1.2E-27 200.2 5.7 175 170-345 14-275 (354)
27 1byi_A Dethiobiotin synthase; 99.9 1.4E-21 4.7E-26 176.7 13.2 195 174-380 2-207 (224)
28 2woo_A ATPase GET3; tail-ancho 99.9 2.3E-22 7.9E-27 192.8 7.9 207 171-379 16-300 (329)
29 3iqw_A Tail-anchored protein t 99.9 1.1E-21 3.9E-26 187.9 12.6 202 170-379 12-303 (334)
30 3io3_A DEHA2D07832P; chaperone 99.8 1.7E-21 5.9E-26 187.5 6.6 206 170-380 14-313 (348)
31 2xxa_A Signal recognition part 99.8 3.2E-20 1.1E-24 183.6 0.9 242 73-373 20-271 (433)
32 1ihu_A Arsenical pump-driving 99.8 1.7E-19 5.9E-24 186.0 5.1 205 171-380 324-569 (589)
33 1ihu_A Arsenical pump-driving 99.7 5.7E-19 2E-23 182.1 5.0 166 174-348 8-241 (589)
34 3igf_A ALL4481 protein; two-do 99.7 7.2E-18 2.5E-22 163.4 11.3 159 174-343 2-252 (374)
35 1uwd_A Hypothetical protein TM 99.7 6E-17 2.1E-21 128.4 10.2 86 74-160 5-90 (103)
36 3lno_A Putative uncharacterize 99.7 2.9E-17 9.9E-22 131.2 6.9 87 73-160 6-93 (108)
37 1j8m_F SRP54, signal recogniti 99.7 1.5E-18 5.2E-23 163.7 -0.8 243 73-374 18-271 (297)
38 3cq1_A Putative uncharacterize 99.7 1.5E-16 5.3E-21 126.0 9.6 84 75-160 6-89 (103)
39 2ffh_A Protein (FFH); SRP54, s 99.7 5.4E-18 1.9E-22 166.7 0.5 241 73-374 20-269 (425)
40 3dm5_A SRP54, signal recogniti 99.6 4.1E-17 1.4E-21 160.7 4.3 241 73-373 21-270 (443)
41 3of5_A Dethiobiotin synthetase 99.6 3.9E-16 1.3E-20 141.7 10.1 195 172-378 3-207 (228)
42 1zu4_A FTSY; GTPase, signal re 99.6 1.6E-15 5.4E-20 144.4 12.6 171 172-374 104-286 (320)
43 2j37_W Signal recognition part 99.6 1.8E-16 6.2E-21 159.0 2.9 242 73-373 21-271 (504)
44 3kl4_A SRP54, signal recogniti 99.6 1.3E-16 4.5E-21 157.0 -0.5 242 73-373 17-269 (433)
45 3fgn_A Dethiobiotin synthetase 99.6 9.8E-15 3.3E-19 134.0 12.1 194 171-381 24-226 (251)
46 1ls1_A Signal recognition part 99.6 8.7E-15 3E-19 137.9 11.1 241 73-374 20-269 (295)
47 3qxc_A Dethiobiotin synthetase 99.5 1.1E-13 3.6E-18 126.4 12.1 210 166-384 14-236 (242)
48 2v3c_C SRP54, signal recogniti 99.5 3E-13 1E-17 133.6 15.9 240 75-374 21-270 (432)
49 1vma_A Cell division protein F 99.4 1.3E-12 4.5E-17 123.3 13.5 167 172-374 103-281 (306)
50 1yrb_A ATP(GTP)binding protein 99.4 3.8E-13 1.3E-17 123.9 6.9 46 172-218 12-57 (262)
51 2px0_A Flagellar biosynthesis 99.2 3.9E-11 1.3E-15 112.8 11.6 160 173-374 105-271 (296)
52 3ux2_A MIP18 family protein FA 99.2 6.1E-12 2.1E-16 101.7 2.0 78 75-152 8-91 (130)
53 3p32_A Probable GTPase RV1496/ 99.0 5.1E-10 1.7E-14 108.0 9.3 152 172-347 78-230 (355)
54 3e70_C DPA, signal recognition 99.0 2E-10 6.8E-15 109.4 4.7 248 72-374 44-300 (328)
55 2yhs_A FTSY, cell division pro 98.8 2.5E-08 8.4E-13 99.2 10.6 167 172-374 292-470 (503)
56 4a0g_A Adenosylmethionine-8-am 98.6 2.1E-07 7E-12 99.1 13.9 89 280-381 201-299 (831)
57 2obn_A Hypothetical protein; s 98.6 2.2E-07 7.6E-12 88.3 11.4 164 173-376 152-335 (349)
58 2r8r_A Sensor protein; KDPD, P 98.6 7.3E-08 2.5E-12 86.2 7.1 44 173-216 5-48 (228)
59 2p67_A LAO/AO transport system 98.5 7.9E-07 2.7E-11 85.0 12.8 152 172-347 55-207 (341)
60 1rj9_A FTSY, signal recognitio 98.4 4.8E-06 1.6E-10 78.2 14.0 166 172-374 101-279 (304)
61 2og2_A Putative signal recogni 98.2 9.5E-06 3.2E-10 77.9 12.2 231 80-374 86-335 (359)
62 3pzx_A Formate--tetrahydrofola 98.2 1E-06 3.4E-11 86.0 5.4 53 171-226 55-110 (557)
63 3b9q_A Chloroplast SRP recepto 98.1 2.2E-05 7.4E-10 73.7 11.7 165 173-374 100-278 (302)
64 2www_A Methylmalonic aciduria 97.8 0.00051 1.7E-08 65.6 16.3 43 173-216 74-116 (349)
65 2h5e_A Peptide chain release f 97.7 0.00013 4.5E-09 73.6 11.0 88 279-373 80-167 (529)
66 2rdo_7 EF-G, elongation factor 97.6 0.00033 1.1E-08 73.2 12.0 86 279-371 80-165 (704)
67 1g5t_A COB(I)alamin adenosyltr 97.5 0.00042 1.4E-08 60.4 9.5 93 175-289 30-129 (196)
68 2g0t_A Conserved hypothetical 97.4 0.0012 3.9E-08 62.9 12.0 137 173-343 169-323 (350)
69 3iev_A GTP-binding protein ERA 97.4 0.0011 3.9E-08 62.0 11.3 67 280-347 58-135 (308)
70 3con_A GTPase NRAS; structural 97.4 0.0025 8.6E-08 54.3 12.7 90 279-374 67-161 (190)
71 2ce2_X GTPase HRAS; signaling 97.4 0.0029 1E-07 52.0 12.7 90 279-374 49-143 (166)
72 1xjc_A MOBB protein homolog; s 97.3 0.00028 9.7E-09 60.1 6.2 42 172-214 3-44 (169)
73 3iby_A Ferrous iron transport 97.3 0.0012 4.1E-08 60.2 10.0 88 279-374 46-145 (256)
74 2qm8_A GTPase/ATPase; G protei 97.3 0.0019 6.6E-08 61.3 11.8 42 172-214 54-95 (337)
75 2c78_A Elongation factor TU-A; 97.3 0.0014 4.7E-08 63.8 10.9 68 279-347 73-141 (405)
76 3vqt_A RF-3, peptide chain rel 97.2 0.0031 1.1E-07 63.9 12.5 89 278-373 97-185 (548)
77 3tr5_A RF-3, peptide chain rel 97.1 0.00021 7.1E-09 72.2 3.8 88 279-373 80-167 (528)
78 1xp8_A RECA protein, recombina 97.1 0.001 3.6E-08 63.8 8.2 38 174-212 75-112 (366)
79 1z2a_A RAS-related protein RAB 97.1 0.0017 5.9E-08 53.8 8.2 90 280-374 53-145 (168)
80 2elf_A Protein translation elo 97.0 0.003 1E-07 60.7 10.8 67 279-346 58-125 (370)
81 1vco_A CTP synthetase; tetrame 97.0 0.0063 2.1E-07 61.2 12.9 44 172-215 11-55 (550)
82 1kao_A RAP2A; GTP-binding prot 97.0 0.011 3.9E-07 48.5 12.5 90 280-374 50-144 (167)
83 3oes_A GTPase rhebl1; small GT 97.0 0.0076 2.6E-07 52.0 11.8 91 279-374 70-165 (201)
84 3t1o_A Gliding protein MGLA; G 97.0 0.012 4E-07 50.1 12.8 88 279-373 72-169 (198)
85 2nzj_A GTP-binding protein REM 97.0 0.0077 2.6E-07 50.2 11.5 90 280-374 51-147 (175)
86 1wf3_A GTP-binding protein; GT 97.0 0.0045 1.5E-07 57.7 10.8 68 279-347 53-130 (301)
87 3bc1_A RAS-related protein RAB 97.0 0.012 4E-07 49.9 12.7 90 280-374 69-163 (195)
88 1u8z_A RAS-related protein RAL 97.0 0.0073 2.5E-07 49.7 11.1 91 279-374 50-145 (168)
89 2efe_B Small GTP-binding prote 96.9 0.011 3.7E-07 49.6 12.2 92 279-374 59-153 (181)
90 2a9k_A RAS-related protein RAL 96.9 0.0073 2.5E-07 50.9 11.2 91 279-374 64-159 (187)
91 3clv_A RAB5 protein, putative; 96.9 0.017 5.6E-07 49.2 13.5 88 281-374 93-182 (208)
92 3i8s_A Ferrous iron transport 96.9 0.0059 2E-07 56.0 11.1 88 279-374 48-147 (274)
93 2b8t_A Thymidine kinase; deoxy 96.9 0.0043 1.5E-07 55.2 9.8 36 175-210 13-48 (223)
94 2xex_A Elongation factor G; GT 96.9 0.0054 1.9E-07 63.9 12.0 86 279-371 73-158 (693)
95 2gf9_A RAS-related protein RAB 96.9 0.0075 2.6E-07 51.4 10.9 91 279-374 69-163 (189)
96 1z0f_A RAB14, member RAS oncog 96.9 0.011 3.9E-07 49.2 11.8 91 279-374 62-156 (179)
97 1d2e_A Elongation factor TU (E 96.9 0.002 6.9E-08 62.5 7.9 68 279-347 64-132 (397)
98 2erx_A GTP-binding protein DI- 96.9 0.0068 2.3E-07 50.2 10.3 91 279-374 49-145 (172)
99 1z08_A RAS-related protein RAB 96.9 0.0094 3.2E-07 49.4 11.1 91 279-374 53-147 (170)
100 2yvu_A Probable adenylyl-sulfa 96.9 0.0014 4.8E-08 56.2 6.0 40 173-213 13-52 (186)
101 1dar_A EF-G, elongation factor 96.9 0.006 2E-07 63.5 11.8 86 279-371 75-160 (691)
102 3tkl_A RAS-related protein RAB 96.8 0.0086 2.9E-07 51.1 10.8 90 280-374 64-157 (196)
103 3dz8_A RAS-related protein RAB 96.8 0.004 1.4E-07 53.3 8.6 91 279-374 70-164 (191)
104 2zr9_A Protein RECA, recombina 96.8 0.0022 7.5E-08 61.2 7.3 38 174-212 62-99 (349)
105 3t5g_A GTP-binding protein RHE 96.8 0.011 3.6E-07 49.8 10.9 90 280-374 53-147 (181)
106 2bov_A RAla, RAS-related prote 96.7 0.015 5.1E-07 49.9 11.7 90 280-374 61-155 (206)
107 2dyk_A GTP-binding protein; GT 96.7 0.01 3.5E-07 48.7 10.1 68 280-348 48-122 (161)
108 1s1m_A CTP synthase; CTP synth 96.7 0.0016 5.3E-08 65.5 5.7 43 173-215 3-46 (545)
109 2gco_A H9, RHO-related GTP-bin 96.7 0.02 6.9E-07 49.3 12.3 69 279-348 71-143 (201)
110 1u94_A RECA protein, recombina 96.7 0.002 6.8E-08 61.7 6.1 38 174-212 64-101 (356)
111 1zbd_A Rabphilin-3A; G protein 96.7 0.021 7.1E-07 49.1 12.3 91 279-374 55-149 (203)
112 2lkc_A Translation initiation 96.7 0.0088 3E-07 50.1 9.6 68 280-348 54-121 (178)
113 2fg5_A RAB-22B, RAS-related pr 96.7 0.015 5E-07 49.7 11.2 91 279-373 70-163 (192)
114 3cph_A RAS-related protein SEC 96.7 0.014 4.7E-07 50.5 11.1 89 280-374 68-160 (213)
115 2hxs_A RAB-26, RAS-related pro 96.7 0.028 9.5E-07 46.9 12.7 91 280-374 55-151 (178)
116 2g6b_A RAS-related protein RAB 96.6 0.026 8.8E-07 47.2 12.4 90 280-374 59-152 (180)
117 1g16_A RAS-related protein SEC 96.6 0.012 4.2E-07 48.6 10.1 90 279-374 50-143 (170)
118 2bcg_Y Protein YP2, GTP-bindin 96.6 0.029 9.9E-07 48.3 12.6 91 279-374 55-149 (206)
119 1z0j_A RAB-22, RAS-related pro 96.6 0.019 6.6E-07 47.3 11.0 92 279-374 53-147 (170)
120 1c1y_A RAS-related protein RAP 96.6 0.019 6.4E-07 47.3 10.8 90 279-373 49-144 (167)
121 4bas_A ADP-ribosylation factor 96.6 0.035 1.2E-06 47.2 12.9 69 279-348 61-141 (199)
122 1xx6_A Thymidine kinase; NESG, 96.5 0.013 4.5E-07 50.8 9.8 36 173-209 8-43 (191)
123 3kkq_A RAS-related protein M-R 96.5 0.017 6E-07 48.5 10.5 91 280-375 65-160 (183)
124 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0027 9.2E-08 57.8 5.5 40 173-213 4-43 (260)
125 1np6_A Molybdopterin-guanine d 96.5 0.0043 1.5E-07 53.0 6.5 42 172-214 5-46 (174)
126 2a5j_A RAS-related protein RAB 96.5 0.012 4.3E-07 50.1 9.4 90 280-374 69-162 (191)
127 1r8s_A ADP-ribosylation factor 96.5 0.11 3.9E-06 42.3 15.1 82 279-370 42-128 (164)
128 3j25_A Tetracycline resistance 96.5 0.0043 1.5E-07 64.1 7.3 88 278-372 64-151 (638)
129 3a1s_A Iron(II) transport prot 96.5 0.022 7.4E-07 51.7 11.3 88 279-374 50-145 (258)
130 1r2q_A RAS-related protein RAB 96.4 0.021 7.1E-07 47.1 10.3 91 279-373 53-146 (170)
131 3pqc_A Probable GTP-binding pr 96.4 0.013 4.4E-07 49.7 9.2 42 305-347 105-146 (195)
132 1ek0_A Protein (GTP-binding pr 96.4 0.028 9.4E-07 46.3 11.0 94 279-374 50-147 (170)
133 2atv_A RERG, RAS-like estrogen 96.4 0.02 6.9E-07 49.0 10.4 90 279-374 74-168 (196)
134 4dcu_A GTP-binding protein ENG 96.4 0.0018 6.1E-08 64.1 4.0 68 279-347 69-144 (456)
135 2gf0_A GTP-binding protein DI- 96.4 0.027 9.2E-07 48.0 11.1 89 279-373 54-148 (199)
136 1nks_A Adenylate kinase; therm 96.4 0.0034 1.2E-07 53.6 5.1 37 174-211 2-38 (194)
137 2hup_A RAS-related protein RAB 96.4 0.033 1.1E-06 48.0 11.6 89 280-373 77-170 (201)
138 1z06_A RAS-related protein RAB 96.4 0.035 1.2E-06 47.1 11.5 89 280-374 68-163 (189)
139 2ywe_A GTP-binding protein LEP 96.3 0.019 6.3E-07 58.7 11.1 69 279-348 71-139 (600)
140 2fv8_A H6, RHO-related GTP-bin 96.3 0.018 6.1E-07 49.9 9.6 68 280-348 72-143 (207)
141 3cpj_B GTP-binding protein YPT 96.3 0.025 8.7E-07 49.6 10.7 89 280-373 61-153 (223)
142 1jny_A EF-1-alpha, elongation 96.3 0.018 6.2E-07 56.4 10.6 70 279-348 82-158 (435)
143 2p5s_A RAS and EF-hand domain 96.3 0.024 8.1E-07 48.7 10.3 95 279-374 75-175 (199)
144 1ky3_A GTP-binding protein YPT 96.3 0.051 1.8E-06 45.2 12.1 68 279-347 56-131 (182)
145 3q72_A GTP-binding protein RAD 96.3 0.028 9.4E-07 46.3 10.3 91 279-374 47-142 (166)
146 2ew1_A RAS-related protein RAB 96.3 0.035 1.2E-06 48.1 11.2 90 280-374 74-167 (201)
147 3k53_A Ferrous iron transport 96.3 0.024 8.3E-07 51.6 10.7 88 279-374 48-144 (271)
148 3j2k_7 ERF3, eukaryotic polype 96.3 0.018 6.2E-07 56.6 10.3 69 279-347 93-168 (439)
149 3p26_A Elongation factor 1 alp 96.3 0.013 4.4E-07 58.4 9.3 70 279-348 109-185 (483)
150 1x3s_A RAS-related protein RAB 96.3 0.029 1E-06 47.5 10.5 90 279-373 62-155 (195)
151 4dsu_A GTPase KRAS, isoform 2B 96.2 0.064 2.2E-06 45.0 12.4 89 280-374 51-144 (189)
152 2yc2_C IFT27, small RAB-relate 96.2 0.0076 2.6E-07 51.9 6.5 90 280-374 72-169 (208)
153 1rz3_A Hypothetical protein rb 96.2 0.0071 2.4E-07 52.6 6.3 41 173-214 22-62 (201)
154 1a7j_A Phosphoribulokinase; tr 96.2 0.0027 9.4E-08 58.9 3.6 41 173-214 5-45 (290)
155 2dr3_A UPF0273 protein PH0284; 96.2 0.0063 2.2E-07 54.1 5.9 39 174-213 24-62 (247)
156 4fn5_A EF-G 1, elongation fact 96.1 0.035 1.2E-06 57.9 12.2 87 279-372 83-169 (709)
157 1upt_A ARL1, ADP-ribosylation 96.1 0.11 3.7E-06 42.7 13.2 69 279-348 49-122 (171)
158 2bme_A RAB4A, RAS-related prot 96.1 0.045 1.5E-06 46.0 10.9 90 280-374 58-151 (186)
159 2y8e_A RAB-protein 6, GH09086P 96.1 0.033 1.1E-06 46.3 9.8 90 280-374 62-155 (179)
160 3tw8_B RAS-related protein RAB 96.1 0.023 7.8E-07 47.4 8.8 91 280-374 57-149 (181)
161 2il1_A RAB12; G-protein, GDP, 96.1 0.019 6.5E-07 49.1 8.4 68 280-348 74-145 (192)
162 1zj6_A ADP-ribosylation factor 96.1 0.17 5.6E-06 42.6 14.2 68 279-347 58-130 (187)
163 3q85_A GTP-binding protein REM 96.0 0.043 1.5E-06 45.2 10.1 91 279-374 49-145 (169)
164 2dy1_A Elongation factor G; tr 96.0 0.019 6.5E-07 59.5 9.4 83 279-369 72-154 (665)
165 1vg8_A RAS-related protein RAB 96.0 0.039 1.3E-06 47.3 10.1 68 279-347 55-130 (207)
166 2hjg_A GTP-binding protein ENG 96.0 0.0039 1.4E-07 61.2 4.0 69 279-348 49-125 (436)
167 2wsm_A Hydrogenase expression/ 96.0 0.0078 2.7E-07 52.7 5.5 39 173-213 30-68 (221)
168 3lxw_A GTPase IMAP family memb 96.0 0.027 9.4E-07 50.6 9.2 93 279-373 68-180 (247)
169 2fn4_A P23, RAS-related protei 96.0 0.039 1.3E-06 46.0 9.7 90 280-374 56-150 (181)
170 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.091 3.1E-06 43.6 12.0 67 280-347 55-129 (177)
171 1zd9_A ADP-ribosylation factor 96.0 0.1 3.6E-06 44.1 12.5 69 279-348 65-138 (188)
172 2j9r_A Thymidine kinase; TK1, 96.0 0.021 7.2E-07 50.3 8.1 37 173-210 28-64 (214)
173 2pez_A Bifunctional 3'-phospho 95.9 0.011 3.8E-07 50.1 5.8 41 173-214 5-45 (179)
174 1ega_A Protein (GTP-binding pr 95.9 0.018 6.3E-07 53.5 7.8 66 279-347 54-129 (301)
175 3uie_A Adenylyl-sulfate kinase 95.9 0.011 3.8E-07 51.2 5.9 43 171-214 23-65 (200)
176 2oil_A CATX-8, RAS-related pro 95.8 0.08 2.7E-06 44.9 11.0 91 279-374 72-166 (193)
177 1uj2_A Uridine-cytidine kinase 95.8 0.0078 2.7E-07 54.3 4.7 42 172-214 21-67 (252)
178 3cb4_D GTP-binding protein LEP 95.8 0.02 7E-07 58.4 8.2 86 279-371 69-154 (599)
179 1m2o_B GTP-binding protein SAR 95.8 0.17 5.9E-06 42.9 13.1 81 279-369 65-150 (190)
180 2atx_A Small GTP binding prote 95.8 0.17 5.9E-06 42.7 13.1 94 279-373 64-170 (194)
181 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.011 3.8E-07 51.9 5.5 38 174-212 24-61 (235)
182 3b1v_A Ferrous iron uptake tra 95.7 0.074 2.5E-06 48.6 11.2 87 280-374 48-142 (272)
183 3sjy_A Translation initiation 95.7 0.033 1.1E-06 53.9 9.3 67 281-347 75-142 (403)
184 2ged_A SR-beta, signal recogni 95.7 0.041 1.4E-06 46.7 8.9 68 280-348 90-170 (193)
185 3bh0_A DNAB-like replicative h 95.7 0.011 3.8E-07 55.3 5.6 38 174-212 69-106 (315)
186 3t34_A Dynamin-related protein 95.7 0.055 1.9E-06 51.5 10.5 68 280-348 135-217 (360)
187 2cvh_A DNA repair and recombin 95.7 0.011 3.6E-07 51.7 5.0 35 174-212 21-55 (220)
188 2f1r_A Molybdopterin-guanine d 95.6 0.0072 2.5E-07 51.4 3.6 41 172-213 1-41 (171)
189 2h57_A ADP-ribosylation factor 95.6 0.049 1.7E-06 46.2 8.9 69 279-348 65-140 (190)
190 2xtp_A GTPase IMAP family memb 95.6 0.042 1.5E-06 49.4 8.9 21 174-195 23-43 (260)
191 1ksh_A ARF-like protein 2; sma 95.6 0.24 8.2E-06 41.5 13.1 69 279-348 60-133 (186)
192 1jwy_B Dynamin A GTPase domain 95.5 0.051 1.8E-06 50.3 9.4 68 280-348 130-212 (315)
193 3lxx_A GTPase IMAP family memb 95.5 0.087 3E-06 46.7 10.5 94 279-373 76-186 (239)
194 2w58_A DNAI, primosome compone 95.5 0.017 5.9E-07 49.8 5.7 37 174-211 55-91 (202)
195 1m7g_A Adenylylsulfate kinase; 95.5 0.013 4.5E-07 51.2 4.9 41 172-213 24-65 (211)
196 2h17_A ADP-ribosylation factor 95.5 0.093 3.2E-06 44.1 10.2 69 279-348 63-136 (181)
197 1mky_A Probable GTP-binding pr 95.5 0.02 6.9E-07 56.1 6.8 67 279-346 47-122 (439)
198 1fzq_A ADP-ribosylation factor 95.5 0.29 9.8E-06 41.1 13.4 69 279-348 58-131 (181)
199 1g7s_A Translation initiation 95.5 0.076 2.6E-06 54.1 11.1 67 280-347 69-135 (594)
200 4a1f_A DNAB helicase, replicat 95.4 0.017 5.9E-07 54.6 5.8 38 175-213 48-85 (338)
201 3reg_A RHO-like small GTPase; 95.4 0.056 1.9E-06 46.0 8.7 92 279-373 69-165 (194)
202 2o52_A RAS-related protein RAB 95.4 0.041 1.4E-06 47.3 7.8 90 280-374 73-166 (200)
203 2b6h_A ADP-ribosylation factor 95.4 0.23 7.9E-06 42.2 12.6 82 279-370 71-157 (192)
204 3llu_A RAS-related GTP-binding 95.4 0.13 4.4E-06 43.9 11.0 68 279-347 67-142 (196)
205 3hr8_A Protein RECA; alpha and 95.4 0.021 7.1E-07 54.5 6.2 38 174-212 62-99 (356)
206 1svi_A GTP-binding protein YSX 95.4 0.064 2.2E-06 45.4 8.8 41 306-348 107-148 (195)
207 3t61_A Gluconokinase; PSI-biol 95.4 0.01 3.6E-07 51.3 3.8 39 169-213 14-52 (202)
208 3bgw_A DNAB-like replicative h 95.4 0.014 4.9E-07 57.4 5.2 39 176-214 199-237 (444)
209 3q3j_B RHO-related GTP-binding 95.4 0.11 3.8E-06 45.2 10.5 95 279-374 73-180 (214)
210 3lvq_E ARF-GAP with SH3 domain 95.3 0.28 9.7E-06 48.5 14.6 83 279-371 364-451 (497)
211 3ec2_A DNA replication protein 95.3 0.013 4.6E-07 49.6 4.2 36 174-210 39-75 (180)
212 4dkx_A RAS-related protein RAB 95.3 0.22 7.6E-06 43.6 12.3 91 279-374 60-154 (216)
213 2pbr_A DTMP kinase, thymidylat 95.3 0.025 8.5E-07 48.1 5.8 34 175-209 2-35 (195)
214 2g3y_A GTP-binding protein GEM 95.2 0.16 5.6E-06 44.3 11.2 89 280-373 86-180 (211)
215 3avx_A Elongation factor TS, e 95.2 0.038 1.3E-06 60.3 8.2 68 279-347 357-425 (1289)
216 2wjg_A FEOB, ferrous iron tran 95.2 0.49 1.7E-05 39.5 14.0 88 279-374 52-147 (188)
217 2hf9_A Probable hydrogenase ni 95.2 0.02 7E-07 50.2 5.3 39 173-213 38-76 (226)
218 2j69_A Bacterial dynamin-like 95.1 0.076 2.6E-06 55.2 10.1 65 281-347 174-243 (695)
219 1f6b_A SAR1; gtpases, N-termin 95.1 0.11 3.9E-06 44.4 9.7 68 279-347 67-139 (198)
220 1kht_A Adenylate kinase; phosp 95.1 0.016 5.5E-07 49.3 4.1 37 174-211 4-40 (192)
221 3c5c_A RAS-like protein 12; GD 95.1 0.12 4E-06 43.8 9.5 90 279-374 67-163 (187)
222 1nrj_B SR-beta, signal recogni 95.0 0.051 1.7E-06 47.2 7.3 22 174-196 13-34 (218)
223 1mh1_A RAC1; GTP-binding, GTPa 95.0 0.048 1.7E-06 45.7 6.9 68 279-347 51-122 (186)
224 4gzl_A RAS-related C3 botulinu 95.0 0.065 2.2E-06 46.2 7.8 69 279-348 76-148 (204)
225 3trf_A Shikimate kinase, SK; a 95.0 0.015 5.1E-07 49.4 3.6 35 172-212 4-38 (185)
226 1moz_A ARL1, ADP-ribosylation 95.0 0.18 6.1E-06 42.0 10.4 67 280-347 61-132 (183)
227 1wb1_A Translation elongation 95.0 0.049 1.7E-06 54.1 7.8 67 279-347 71-138 (482)
228 1zo1_I IF2, translation initia 95.0 0.035 1.2E-06 55.4 6.7 68 279-347 49-116 (501)
229 2z0h_A DTMP kinase, thymidylat 95.0 0.034 1.1E-06 47.5 5.8 35 175-210 2-36 (197)
230 4djt_A GTP-binding nuclear pro 95.0 0.05 1.7E-06 47.2 7.0 67 281-348 61-131 (218)
231 3bwd_D RAC-like GTP-binding pr 95.0 0.058 2E-06 45.0 7.2 94 279-373 54-158 (182)
232 1kk1_A EIF2gamma; initiation o 94.9 0.068 2.3E-06 51.8 8.6 66 281-347 83-150 (410)
233 3dpu_A RAB family protein; roc 94.9 0.066 2.3E-06 53.8 8.7 67 279-348 96-164 (535)
234 2wji_A Ferrous iron transport 94.9 0.35 1.2E-05 39.8 11.9 86 280-373 49-142 (165)
235 2qpt_A EH domain-containing pr 94.9 0.029 1E-06 56.7 6.1 65 282-347 155-231 (550)
236 1cr0_A DNA primase/helicase; R 94.9 0.034 1.2E-06 51.2 6.1 38 174-212 36-74 (296)
237 2kjq_A DNAA-related protein; s 94.9 0.028 9.6E-07 46.5 4.8 37 174-211 37-73 (149)
238 3bos_A Putative DNA replicatio 94.9 0.037 1.3E-06 48.6 6.0 38 174-212 53-90 (242)
239 2x77_A ADP-ribosylation factor 94.8 0.18 6E-06 42.5 10.0 69 279-348 64-137 (189)
240 1e6c_A Shikimate kinase; phosp 94.8 0.019 6.4E-07 48.1 3.7 35 172-212 1-35 (173)
241 2gks_A Bifunctional SAT/APS ki 94.8 0.027 9.1E-07 56.9 5.4 40 172-212 371-410 (546)
242 2qu8_A Putative nucleolar GTP- 94.8 0.19 6.4E-06 44.1 10.4 69 279-348 74-156 (228)
243 3izy_P Translation initiation 94.8 0.028 9.6E-07 56.5 5.4 67 280-347 51-117 (537)
244 1nn5_A Similar to deoxythymidy 94.8 0.041 1.4E-06 47.7 5.9 36 173-209 9-44 (215)
245 2zts_A Putative uncharacterize 94.8 0.032 1.1E-06 49.5 5.3 39 175-213 31-70 (251)
246 3c8u_A Fructokinase; YP_612366 94.7 0.05 1.7E-06 47.3 6.3 39 173-212 22-60 (208)
247 3do6_A Formate--tetrahydrofola 94.7 0.026 9E-07 55.0 4.6 51 171-224 41-94 (543)
248 3r7w_A Gtpase1, GTP-binding pr 94.7 0.029 9.9E-07 52.2 4.9 89 279-369 50-152 (307)
249 1qhx_A CPT, protein (chloramph 94.6 0.024 8.1E-07 47.7 3.9 35 174-212 4-38 (178)
250 2r6a_A DNAB helicase, replicat 94.6 0.043 1.5E-06 54.0 6.2 39 174-213 204-243 (454)
251 3o47_A ADP-ribosylation factor 94.6 0.2 6.9E-06 46.9 10.6 83 279-371 207-294 (329)
252 2wwf_A Thymidilate kinase, put 94.5 0.049 1.7E-06 47.1 5.8 36 173-209 10-45 (212)
253 3gj0_A GTP-binding nuclear pro 94.5 0.06 2E-06 46.9 6.4 69 279-348 62-133 (221)
254 1s0u_A EIF-2-gamma, translatio 94.5 0.13 4.4E-06 49.8 9.4 67 281-348 81-149 (408)
255 1gwn_A RHO-related GTP-binding 94.5 0.14 4.8E-06 44.2 8.7 68 279-347 74-145 (205)
256 1via_A Shikimate kinase; struc 94.5 0.022 7.7E-07 47.9 3.4 34 173-212 4-37 (175)
257 2orw_A Thymidine kinase; TMTK, 94.5 0.039 1.3E-06 47.3 4.9 37 174-211 4-40 (184)
258 1ly1_A Polynucleotide kinase; 94.5 0.038 1.3E-06 46.4 4.8 35 173-212 2-36 (181)
259 2q6t_A DNAB replication FORK h 94.5 0.042 1.4E-06 54.0 5.7 38 174-212 201-239 (444)
260 2axn_A 6-phosphofructo-2-kinas 94.4 0.044 1.5E-06 55.0 5.9 41 171-212 33-73 (520)
261 2iyv_A Shikimate kinase, SK; t 94.4 0.016 5.5E-07 49.2 2.3 34 173-212 2-35 (184)
262 4dcu_A GTP-binding protein ENG 94.3 0.11 3.8E-06 51.1 8.5 68 280-348 242-320 (456)
263 2j0v_A RAC-like GTP-binding pr 94.3 0.17 5.7E-06 43.6 8.8 94 279-373 55-157 (212)
264 2plr_A DTMP kinase, probable t 94.3 0.052 1.8E-06 46.8 5.4 34 174-209 5-38 (213)
265 1m7b_A RND3/RHOE small GTP-bin 94.3 0.2 6.9E-06 42.0 9.0 68 279-347 53-124 (184)
266 3mca_A HBS1, elongation factor 94.2 0.0094 3.2E-07 60.9 0.5 69 279-347 253-328 (592)
267 1x6v_B Bifunctional 3'-phospho 94.2 0.046 1.6E-06 56.0 5.5 43 172-215 51-93 (630)
268 1n0u_A EF-2, elongation factor 94.2 0.1 3.5E-06 55.4 8.3 68 279-347 96-163 (842)
269 2qgz_A Helicase loader, putati 94.1 0.063 2.1E-06 50.0 5.9 38 173-211 152-190 (308)
270 1sq5_A Pantothenate kinase; P- 94.1 0.058 2E-06 50.2 5.6 41 173-214 80-122 (308)
271 1m8p_A Sulfate adenylyltransfe 94.1 0.047 1.6E-06 55.4 5.3 40 172-212 395-435 (573)
272 2cjw_A GTP-binding protein GEM 94.0 0.44 1.5E-05 40.5 10.8 89 280-373 55-149 (192)
273 1q57_A DNA primase/helicase; d 94.0 0.03 1E-06 55.9 3.7 38 176-213 244-282 (503)
274 2z43_A DNA repair and recombin 94.0 0.038 1.3E-06 51.8 4.2 39 174-213 108-152 (324)
275 3tqc_A Pantothenate kinase; bi 94.0 0.068 2.3E-06 50.1 5.9 41 173-214 92-134 (321)
276 1kag_A SKI, shikimate kinase I 94.0 0.03 1E-06 46.9 3.1 35 172-212 3-37 (173)
277 1uf9_A TT1252 protein; P-loop, 94.0 0.029 9.8E-07 48.2 3.0 36 170-212 5-40 (203)
278 2j1l_A RHO-related GTP-binding 93.8 0.13 4.3E-06 44.7 7.0 68 280-348 81-152 (214)
279 3crm_A TRNA delta(2)-isopenten 93.8 0.048 1.7E-06 51.1 4.4 37 171-213 3-39 (323)
280 1v5w_A DMC1, meiotic recombina 93.8 0.062 2.1E-06 50.9 5.2 38 174-212 123-166 (343)
281 1jjv_A Dephospho-COA kinase; P 93.8 0.048 1.7E-06 47.1 4.1 34 172-212 1-34 (206)
282 2if2_A Dephospho-COA kinase; a 93.8 0.035 1.2E-06 47.9 3.1 32 174-212 2-33 (204)
283 2fh5_B SR-beta, signal recogni 93.7 0.41 1.4E-05 41.1 10.2 68 280-348 53-129 (214)
284 2v54_A DTMP kinase, thymidylat 93.7 0.049 1.7E-06 46.8 4.0 35 173-210 4-38 (204)
285 1qf9_A UMP/CMP kinase, protein 93.6 0.056 1.9E-06 45.8 4.3 34 172-211 5-38 (194)
286 1jbk_A CLPB protein; beta barr 93.6 0.094 3.2E-06 43.8 5.7 36 174-210 44-86 (195)
287 3asz_A Uridine kinase; cytidin 93.6 0.076 2.6E-06 46.0 5.2 38 173-214 6-43 (211)
288 1nlf_A Regulatory protein REPA 93.6 0.081 2.8E-06 48.2 5.6 38 174-212 31-78 (279)
289 1ukz_A Uridylate kinase; trans 93.5 0.058 2E-06 46.5 4.2 36 170-211 12-47 (203)
290 1knq_A Gluconate kinase; ALFA/ 93.5 0.088 3E-06 44.1 5.3 34 173-212 8-41 (175)
291 1odf_A YGR205W, hypothetical 3 93.5 0.056 1.9E-06 49.9 4.3 40 173-213 31-73 (290)
292 3ihw_A Centg3; RAS, centaurin, 93.5 1 3.5E-05 37.7 12.1 87 280-374 66-158 (184)
293 1n0w_A DNA repair protein RAD5 93.5 0.063 2.1E-06 47.4 4.4 38 174-212 25-68 (243)
294 2r2a_A Uncharacterized protein 93.5 0.054 1.8E-06 47.2 3.8 39 172-211 4-48 (199)
295 1gtv_A TMK, thymidylate kinase 93.4 0.023 7.8E-07 49.4 1.4 35 175-210 2-36 (214)
296 1zun_B Sulfate adenylate trans 93.4 0.14 4.6E-06 50.1 7.1 68 279-347 102-170 (434)
297 3d3q_A TRNA delta(2)-isopenten 93.4 0.071 2.4E-06 50.3 4.8 34 174-213 8-41 (340)
298 2rhm_A Putative kinase; P-loop 93.4 0.062 2.1E-06 45.6 4.1 33 173-211 5-37 (193)
299 2ze6_A Isopentenyl transferase 93.3 0.068 2.3E-06 48.2 4.5 33 174-212 2-34 (253)
300 3io5_A Recombination and repai 93.3 0.072 2.5E-06 49.8 4.7 37 175-212 30-68 (333)
301 3vaa_A Shikimate kinase, SK; s 93.3 0.053 1.8E-06 46.7 3.6 34 173-212 25-58 (199)
302 2iwr_A Centaurin gamma 1; ANK 93.3 1.1 3.8E-05 36.8 11.8 86 280-373 53-146 (178)
303 2qt1_A Nicotinamide riboside k 93.2 0.052 1.8E-06 47.0 3.4 37 172-213 20-56 (207)
304 3ake_A Cytidylate kinase; CMP 93.2 0.048 1.7E-06 46.9 3.2 33 174-212 3-35 (208)
305 1f60_A Elongation factor EEF1A 93.2 0.2 7E-06 49.2 8.0 69 279-347 83-158 (458)
306 2grj_A Dephospho-COA kinase; T 93.2 0.076 2.6E-06 45.9 4.3 34 174-213 13-46 (192)
307 4hlc_A DTMP kinase, thymidylat 93.1 0.099 3.4E-06 45.6 5.1 36 172-209 1-36 (205)
308 3kb2_A SPBC2 prophage-derived 93.1 0.068 2.3E-06 44.4 3.8 33 174-212 2-34 (173)
309 1g8f_A Sulfate adenylyltransfe 93.0 0.069 2.4E-06 53.3 4.3 40 172-212 394-435 (511)
310 3e2i_A Thymidine kinase; Zn-bi 93.0 0.46 1.6E-05 41.7 9.1 37 173-210 28-64 (219)
311 2bwj_A Adenylate kinase 5; pho 93.0 0.053 1.8E-06 46.3 3.1 33 173-211 12-44 (199)
312 1y63_A LMAJ004144AAA protein; 92.8 0.093 3.2E-06 44.6 4.4 34 174-212 11-44 (184)
313 2p5t_B PEZT; postsegregational 92.8 0.068 2.3E-06 48.1 3.6 39 173-215 32-70 (253)
314 2p65_A Hypothetical protein PF 92.7 0.1 3.6E-06 43.5 4.6 26 174-200 44-69 (187)
315 2e87_A Hypothetical protein PH 92.7 1.2 4.2E-05 41.9 12.6 67 280-347 213-293 (357)
316 4eun_A Thermoresistant glucoki 92.7 0.11 3.8E-06 44.7 4.8 34 173-212 29-62 (200)
317 4edh_A DTMP kinase, thymidylat 92.7 0.15 5.2E-06 44.7 5.7 35 174-209 7-41 (213)
318 2ehv_A Hypothetical protein PH 92.7 0.14 4.6E-06 45.4 5.4 39 173-212 30-69 (251)
319 3def_A T7I23.11 protein; chlor 92.7 0.11 3.8E-06 46.9 4.9 20 175-195 38-57 (262)
320 1lnz_A SPO0B-associated GTP-bi 92.4 0.21 7.3E-06 47.1 6.6 80 281-369 206-301 (342)
321 2cdn_A Adenylate kinase; phosp 92.4 0.11 3.7E-06 44.7 4.3 34 172-211 19-52 (201)
322 1tev_A UMP-CMP kinase; ploop, 92.3 0.11 3.8E-06 43.9 4.2 32 174-211 4-35 (196)
323 3hjn_A DTMP kinase, thymidylat 92.3 0.18 6E-06 43.6 5.5 33 176-209 3-35 (197)
324 1zuh_A Shikimate kinase; alpha 92.3 0.11 3.6E-06 43.3 3.9 34 173-212 7-40 (168)
325 2jeo_A Uridine-cytidine kinase 92.2 0.16 5.4E-06 45.3 5.3 39 173-212 25-68 (245)
326 1h65_A Chloroplast outer envel 92.2 0.36 1.2E-05 43.6 7.8 20 175-195 41-60 (270)
327 3lw7_A Adenylate kinase relate 92.2 0.088 3E-06 43.6 3.3 28 175-207 3-30 (179)
328 2f6r_A COA synthase, bifunctio 92.1 0.12 4.2E-06 47.3 4.5 34 172-212 74-107 (281)
329 3ld9_A DTMP kinase, thymidylat 92.1 0.15 5.1E-06 45.2 4.9 40 173-213 21-61 (223)
330 3gee_A MNME, tRNA modification 92.1 0.12 4E-06 51.3 4.6 69 279-348 279-357 (476)
331 2i1q_A DNA repair and recombin 92.1 0.1 3.5E-06 48.6 4.0 39 174-213 99-153 (322)
332 3lv8_A DTMP kinase, thymidylat 92.1 0.19 6.5E-06 44.9 5.5 34 174-208 28-62 (236)
333 1zp6_A Hypothetical protein AT 92.0 0.12 4E-06 43.9 4.0 34 174-211 10-43 (191)
334 2fu5_C RAS-related protein RAB 92.0 0.39 1.3E-05 39.9 7.2 90 280-374 56-149 (183)
335 2c5m_A CTP synthase; cytidine 92.0 0.17 6E-06 45.2 5.0 44 172-215 22-66 (294)
336 1gvn_B Zeta; postsegregational 92.0 0.11 3.7E-06 47.8 3.9 37 175-214 34-70 (287)
337 2ewv_A Twitching motility prot 92.0 2.2 7.6E-05 40.5 13.3 37 173-210 136-173 (372)
338 1l8q_A Chromosomal replication 91.9 0.18 6.3E-06 46.8 5.6 36 175-211 39-74 (324)
339 2orv_A Thymidine kinase; TP4A 91.9 0.23 8E-06 44.1 5.9 39 171-210 17-55 (234)
340 4tmk_A Protein (thymidylate ki 91.8 0.22 7.5E-06 43.7 5.5 34 174-208 4-38 (213)
341 3iij_A Coilin-interacting nucl 91.8 0.12 4.2E-06 43.5 3.8 32 174-211 12-43 (180)
342 4eaq_A DTMP kinase, thymidylat 91.8 0.19 6.5E-06 44.5 5.2 35 172-208 25-59 (229)
343 4fcw_A Chaperone protein CLPB; 91.6 0.22 7.5E-06 45.7 5.6 40 174-214 48-87 (311)
344 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.076 2.6E-06 49.8 2.3 34 174-211 124-157 (331)
345 2c95_A Adenylate kinase 1; tra 91.4 0.15 5E-06 43.4 3.9 33 173-211 9-41 (196)
346 1ak2_A Adenylate kinase isoenz 91.4 0.16 5.4E-06 44.9 4.2 35 171-211 14-48 (233)
347 2hjg_A GTP-binding protein ENG 91.3 0.071 2.4E-06 52.1 2.1 67 280-348 222-300 (436)
348 1aky_A Adenylate kinase; ATP:A 91.3 0.16 5.3E-06 44.4 4.1 33 173-211 4-36 (220)
349 3cm0_A Adenylate kinase; ATP-b 91.3 0.16 5.6E-06 42.7 4.1 32 174-211 5-36 (186)
350 1cke_A CK, MSSA, protein (cyti 91.2 0.17 5.7E-06 44.2 4.2 32 174-211 6-37 (227)
351 3cmw_A Protein RECA, recombina 91.2 0.21 7E-06 56.7 5.8 41 173-214 383-423 (1706)
352 3cmw_A Protein RECA, recombina 91.1 0.21 7.2E-06 56.6 5.8 39 174-213 733-771 (1706)
353 3v9p_A DTMP kinase, thymidylat 91.1 0.2 6.7E-06 44.5 4.5 35 174-209 26-64 (227)
354 3n70_A Transport activator; si 91.1 0.12 4E-06 42.2 2.8 36 175-212 26-61 (145)
355 3a8t_A Adenylate isopentenyltr 91.0 0.73 2.5E-05 43.3 8.5 35 174-214 41-75 (339)
356 3th5_A RAS-related C3 botulinu 90.4 0.042 1.4E-06 47.3 0.0 69 279-348 76-148 (204)
357 1ltq_A Polynucleotide kinase; 90.9 0.17 5.9E-06 46.4 4.1 35 173-212 2-36 (301)
358 2qby_B CDC6 homolog 3, cell di 90.9 0.22 7.7E-06 47.0 5.1 37 174-211 46-90 (384)
359 3e1s_A Exodeoxyribonuclease V, 90.8 0.25 8.7E-06 50.1 5.6 34 174-208 205-238 (574)
360 4a74_A DNA repair and recombin 90.8 0.22 7.5E-06 43.4 4.5 38 174-212 26-69 (231)
361 3be4_A Adenylate kinase; malar 90.8 0.15 5.2E-06 44.5 3.5 32 174-211 6-37 (217)
362 3aez_A Pantothenate kinase; tr 90.7 0.37 1.3E-05 44.9 6.2 40 173-213 90-131 (312)
363 3t15_A Ribulose bisphosphate c 90.7 0.23 7.7E-06 45.7 4.7 33 174-210 37-69 (293)
364 3geh_A MNME, tRNA modification 90.6 0.35 1.2E-05 47.6 6.3 67 279-348 270-344 (462)
365 1vht_A Dephospho-COA kinase; s 90.4 0.23 7.9E-06 43.2 4.4 32 174-212 5-36 (218)
366 3syl_A Protein CBBX; photosynt 90.4 0.33 1.1E-05 44.4 5.7 38 173-211 67-108 (309)
367 3jvv_A Twitching mobility prot 90.4 2.5 8.7E-05 39.9 11.9 35 174-209 124-159 (356)
368 2vli_A Antibiotic resistance p 90.4 0.11 3.6E-06 43.8 2.0 30 173-206 5-34 (183)
369 3l0i_B RAS-related protein RAB 90.4 0.32 1.1E-05 41.4 5.1 89 280-373 81-173 (199)
370 2qby_A CDC6 homolog 1, cell di 90.1 0.24 8.1E-06 46.7 4.5 37 174-211 46-85 (386)
371 2pt5_A Shikimate kinase, SK; a 90.1 0.23 7.8E-06 41.0 3.9 32 175-212 2-33 (168)
372 3nva_A CTP synthase; rossman f 90.1 0.43 1.5E-05 47.4 6.3 45 172-216 2-47 (535)
373 2qtf_A Protein HFLX, GTP-bindi 90.1 2 6.7E-05 40.8 10.8 21 174-195 180-200 (364)
374 2bdt_A BH3686; alpha-beta prot 90.0 0.21 7.1E-06 42.4 3.6 35 173-212 2-36 (189)
375 1pzn_A RAD51, DNA repair and r 90.0 0.25 8.7E-06 46.7 4.5 39 173-212 131-175 (349)
376 2jaq_A Deoxyguanosine kinase; 90.0 0.22 7.7E-06 42.4 3.9 23 175-198 2-24 (205)
377 3lda_A DNA repair protein RAD5 90.0 0.22 7.7E-06 48.1 4.1 39 173-212 178-222 (400)
378 3izq_1 HBS1P, elongation facto 89.9 0.51 1.8E-05 48.2 7.0 70 279-348 243-319 (611)
379 2wkq_A NPH1-1, RAS-related C3 89.8 0.52 1.8E-05 43.4 6.4 67 280-347 202-272 (332)
380 3cmu_A Protein RECA, recombina 89.6 0.32 1.1E-05 56.0 5.6 40 174-214 384-423 (2050)
381 1zak_A Adenylate kinase; ATP:A 89.6 0.21 7.2E-06 43.6 3.4 25 173-198 5-29 (222)
382 1bif_A 6-phosphofructo-2-kinas 89.5 0.42 1.4E-05 47.1 5.8 39 172-211 38-76 (469)
383 3cmu_A Protein RECA, recombina 89.4 0.33 1.1E-05 55.8 5.6 39 173-212 1427-1465(2050)
384 1w4r_A Thymidine kinase; type 89.4 0.55 1.9E-05 40.5 5.8 43 168-211 15-57 (195)
385 2bbw_A Adenylate kinase 4, AK4 89.4 0.28 9.6E-06 43.6 4.1 25 173-198 27-51 (246)
386 3exa_A TRNA delta(2)-isopenten 89.3 0.32 1.1E-05 45.3 4.5 34 174-213 4-37 (322)
387 3foz_A TRNA delta(2)-isopenten 89.2 0.52 1.8E-05 43.8 5.9 36 172-213 9-44 (316)
388 1zd8_A GTP:AMP phosphotransfer 89.0 0.21 7.3E-06 43.8 3.0 32 174-211 8-39 (227)
389 2chg_A Replication factor C sm 88.9 0.22 7.5E-06 42.6 2.9 35 176-211 41-75 (226)
390 3umf_A Adenylate kinase; rossm 88.8 0.39 1.3E-05 42.2 4.5 26 172-198 28-53 (217)
391 4b3f_X DNA-binding protein smu 88.8 0.44 1.5E-05 49.0 5.6 35 175-209 206-240 (646)
392 3ch4_B Pmkase, phosphomevalona 88.8 0.39 1.3E-05 41.7 4.4 28 170-198 8-35 (202)
393 1e4v_A Adenylate kinase; trans 88.8 0.27 9.4E-06 42.6 3.5 30 175-210 2-31 (214)
394 1fnn_A CDC6P, cell division co 88.7 0.52 1.8E-05 44.5 5.7 37 175-212 46-83 (389)
395 2bjv_A PSP operon transcriptio 88.6 0.3 1E-05 43.8 3.8 37 175-212 31-67 (265)
396 2v1u_A Cell division control p 88.6 0.3 1E-05 46.0 3.9 38 174-212 45-88 (387)
397 4dhe_A Probable GTP-binding pr 88.6 0.54 1.8E-05 40.6 5.3 68 279-348 77-158 (223)
398 1tf7_A KAIC; homohexamer, hexa 88.5 0.51 1.8E-05 47.2 5.7 38 173-211 281-318 (525)
399 2f7s_A C25KG, RAS-related prot 88.5 0.53 1.8E-05 40.5 5.2 91 280-374 83-177 (217)
400 3upu_A ATP-dependent DNA helic 88.5 0.5 1.7E-05 46.3 5.6 33 176-208 47-80 (459)
401 1w78_A FOLC bifunctional prote 88.5 0.63 2.1E-05 45.1 6.2 34 172-208 48-81 (422)
402 3tau_A Guanylate kinase, GMP k 88.5 0.35 1.2E-05 41.9 3.9 26 172-198 7-32 (208)
403 3tlx_A Adenylate kinase 2; str 88.2 0.45 1.5E-05 42.4 4.6 33 173-211 29-61 (243)
404 2a5y_B CED-4; apoptosis; HET: 88.1 0.33 1.1E-05 48.8 4.1 23 173-196 152-174 (549)
405 3fb4_A Adenylate kinase; psych 88.1 0.37 1.3E-05 41.7 3.9 31 175-211 2-32 (216)
406 2eyu_A Twitching motility prot 88.1 0.75 2.6E-05 41.5 6.0 38 173-211 25-63 (261)
407 4e22_A Cytidylate kinase; P-lo 88.0 0.36 1.2E-05 43.3 3.8 27 171-198 25-51 (252)
408 3cr8_A Sulfate adenylyltranfer 87.9 0.3 1E-05 49.2 3.5 39 173-212 369-408 (552)
409 4ag6_A VIRB4 ATPase, type IV s 87.8 0.6 2.1E-05 44.6 5.5 36 175-211 37-72 (392)
410 1kgd_A CASK, peripheral plasma 87.7 0.34 1.2E-05 40.8 3.3 25 173-198 5-29 (180)
411 1mky_A Probable GTP-binding pr 87.6 1.8 6E-05 42.1 8.8 42 304-347 263-305 (439)
412 2qz4_A Paraplegin; AAA+, SPG7, 87.6 0.8 2.7E-05 40.6 5.9 35 174-212 40-74 (262)
413 1c9k_A COBU, adenosylcobinamid 87.6 0.31 1.1E-05 41.6 3.0 32 176-212 2-33 (180)
414 2xb4_A Adenylate kinase; ATP-b 87.6 0.37 1.3E-05 42.2 3.6 31 175-211 2-32 (223)
415 1ofh_A ATP-dependent HSL prote 87.3 0.66 2.2E-05 42.2 5.3 35 174-212 51-85 (310)
416 2i3b_A HCR-ntpase, human cance 87.3 0.47 1.6E-05 40.7 4.0 27 175-202 3-29 (189)
417 2z4s_A Chromosomal replication 87.3 0.51 1.7E-05 46.1 4.7 38 173-211 130-169 (440)
418 1jbw_A Folylpolyglutamate synt 87.1 0.75 2.6E-05 44.6 5.8 33 173-208 39-71 (428)
419 1xhj_A Nitrogen fixation prote 87.0 0.7 2.4E-05 34.4 4.2 71 74-150 6-78 (88)
420 3eag_A UDP-N-acetylmuramate:L- 86.9 0.66 2.3E-05 43.3 5.1 32 173-207 108-139 (326)
421 3r20_A Cytidylate kinase; stru 86.9 0.5 1.7E-05 42.0 4.0 34 173-212 9-42 (233)
422 3nrs_A Dihydrofolate:folylpoly 86.7 0.94 3.2E-05 44.1 6.3 35 171-208 50-84 (437)
423 2vo1_A CTP synthase 1; pyrimid 86.7 1.2 4.1E-05 40.2 6.3 45 172-216 22-67 (295)
424 2j41_A Guanylate kinase; GMP, 86.6 0.47 1.6E-05 40.4 3.7 24 174-198 7-30 (207)
425 1nij_A Hypothetical protein YJ 86.6 0.45 1.5E-05 44.3 3.7 37 174-213 5-41 (318)
426 1w5s_A Origin recognition comp 86.6 0.57 1.9E-05 44.6 4.6 33 180-212 58-96 (412)
427 3tr0_A Guanylate kinase, GMP k 86.5 0.48 1.7E-05 40.4 3.7 25 173-198 7-31 (205)
428 2qor_A Guanylate kinase; phosp 86.5 0.35 1.2E-05 41.6 2.7 24 174-198 13-36 (204)
429 3dl0_A Adenylate kinase; phosp 86.3 0.42 1.4E-05 41.3 3.2 31 175-211 2-32 (216)
430 1r5b_A Eukaryotic peptide chai 86.3 0.69 2.3E-05 45.5 5.1 69 279-347 119-194 (467)
431 4i1u_A Dephospho-COA kinase; s 86.1 0.62 2.1E-05 40.7 4.1 33 173-212 9-41 (210)
432 1lv7_A FTSH; alpha/beta domain 85.8 0.95 3.2E-05 40.2 5.4 33 174-210 46-78 (257)
433 1e8c_A UDP-N-acetylmuramoylala 85.4 1.1 3.6E-05 44.6 6.0 35 172-209 107-141 (498)
434 3orf_A Dihydropteridine reduct 85.4 0.51 1.7E-05 42.0 3.3 41 168-213 17-57 (251)
435 3nwj_A ATSK2; P loop, shikimat 85.3 0.55 1.9E-05 42.2 3.5 34 173-212 48-81 (250)
436 1ye8_A Protein THEP1, hypothet 85.2 0.68 2.3E-05 39.2 3.9 24 175-199 2-25 (178)
437 1w36_D RECD, exodeoxyribonucle 85.1 0.86 2.9E-05 46.5 5.3 34 175-208 165-202 (608)
438 1um8_A ATP-dependent CLP prote 85.0 0.86 2.9E-05 43.2 4.9 35 174-212 73-107 (376)
439 3ney_A 55 kDa erythrocyte memb 84.7 0.67 2.3E-05 40.1 3.6 30 168-198 13-43 (197)
440 2vos_A Folylpolyglutamate synt 84.7 1.1 3.9E-05 44.2 5.8 34 172-208 63-96 (487)
441 1o5z_A Folylpolyglutamate synt 84.6 1 3.5E-05 44.0 5.3 34 172-208 51-84 (442)
442 1d2n_A N-ethylmaleimide-sensit 84.4 1.1 3.8E-05 40.2 5.2 33 174-210 65-97 (272)
443 3ged_A Short-chain dehydrogena 84.4 0.54 1.9E-05 42.2 3.0 36 172-212 1-36 (247)
444 2wtz_A UDP-N-acetylmuramoyl-L- 84.4 1.2 4.3E-05 44.5 6.0 34 172-208 145-178 (535)
445 3a00_A Guanylate kinase, GMP k 84.1 0.51 1.7E-05 39.9 2.6 25 174-199 2-26 (186)
446 3cbq_A GTP-binding protein REM 84.1 4.8 0.00016 33.9 8.9 90 280-374 71-166 (195)
447 3qq5_A Small GTP-binding prote 84.0 0.89 3E-05 44.2 4.6 64 282-348 84-154 (423)
448 1q3t_A Cytidylate kinase; nucl 84.0 0.88 3E-05 40.0 4.2 34 173-212 16-49 (236)
449 1sxj_A Activator 1 95 kDa subu 83.9 0.94 3.2E-05 45.1 4.8 34 174-211 78-111 (516)
450 1njg_A DNA polymerase III subu 83.8 0.91 3.1E-05 39.0 4.2 27 174-201 46-72 (250)
451 3hdt_A Putative kinase; struct 83.7 0.91 3.1E-05 40.0 4.2 33 174-212 15-47 (223)
452 3sr0_A Adenylate kinase; phosp 83.7 0.85 2.9E-05 39.6 3.9 23 175-198 2-24 (206)
453 1xwi_A SKD1 protein; VPS4B, AA 83.5 1.2 4.1E-05 41.4 5.1 36 173-211 45-80 (322)
454 3b9p_A CG5977-PA, isoform A; A 83.5 1.3 4.4E-05 40.2 5.2 34 173-210 54-87 (297)
455 2npi_A Protein CLP1; CLP1-PCF1 83.4 0.53 1.8E-05 46.3 2.7 41 173-214 138-179 (460)
456 3h4m_A Proteasome-activating n 83.4 1.2 4.2E-05 40.0 5.1 34 174-211 52-85 (285)
457 2qmh_A HPR kinase/phosphorylas 83.4 0.74 2.5E-05 39.9 3.3 33 172-211 33-65 (205)
458 3d8b_A Fidgetin-like protein 1 83.3 1.4 4.7E-05 41.6 5.5 36 172-211 116-151 (357)
459 3lk7_A UDP-N-acetylmuramoylala 83.2 1.4 4.7E-05 43.1 5.6 31 174-207 113-143 (451)
460 1e9r_A Conjugal transfer prote 83.2 1.2 4.2E-05 43.0 5.2 36 175-211 55-90 (437)
461 3tqf_A HPR(Ser) kinase; transf 83.2 1.2 4.1E-05 37.8 4.4 27 173-204 16-42 (181)
462 2ocp_A DGK, deoxyguanosine kin 83.1 0.73 2.5E-05 40.7 3.3 25 174-199 3-27 (241)
463 1z6t_A APAF-1, apoptotic prote 82.9 0.84 2.9E-05 46.0 4.1 40 172-212 146-189 (591)
464 3bs4_A Uncharacterized protein 82.8 1.7 5.8E-05 39.2 5.6 40 174-214 22-61 (260)
465 1lvg_A Guanylate kinase, GMP k 82.7 0.8 2.7E-05 39.3 3.3 25 174-199 5-29 (198)
466 3zvl_A Bifunctional polynucleo 82.7 0.53 1.8E-05 45.6 2.4 34 173-212 258-291 (416)
467 2vp4_A Deoxynucleoside kinase; 82.7 0.8 2.7E-05 40.2 3.4 35 172-211 19-53 (230)
468 2gk6_A Regulator of nonsense t 82.6 1.3 4.4E-05 45.3 5.3 34 176-209 197-231 (624)
469 2pt7_A CAG-ALFA; ATPase, prote 82.4 3.9 0.00013 38.1 8.2 35 173-209 171-205 (330)
470 3te6_A Regulatory protein SIR3 82.3 1.1 3.9E-05 41.6 4.4 39 173-212 45-90 (318)
471 1htw_A HI0065; nucleotide-bind 82.3 1.1 3.6E-05 37.2 3.8 24 174-198 34-57 (158)
472 3hws_A ATP-dependent CLP prote 82.2 1.3 4.5E-05 41.7 4.9 34 174-211 52-85 (363)
473 3cf0_A Transitional endoplasmi 82.0 1.3 4.3E-05 40.7 4.6 33 174-210 50-82 (301)
474 3pxg_A Negative regulator of g 81.4 1.2 4E-05 43.9 4.3 36 175-211 203-245 (468)
475 3eph_A TRNA isopentenyltransfe 81.4 1.6 5.6E-05 42.0 5.2 33 174-212 3-35 (409)
476 1p9r_A General secretion pathw 81.3 1.8 6.1E-05 41.9 5.6 39 172-211 166-204 (418)
477 3eie_A Vacuolar protein sortin 81.1 1.9 6.4E-05 39.9 5.5 34 173-210 51-84 (322)
478 1ojl_A Transcriptional regulat 81.0 0.75 2.6E-05 42.4 2.6 37 175-212 27-63 (304)
479 2ehd_A Oxidoreductase, oxidore 81.0 0.75 2.6E-05 40.1 2.5 36 171-211 3-38 (234)
480 2x5o_A UDP-N-acetylmuramoylala 80.9 1.8 6.3E-05 42.0 5.5 33 173-208 104-136 (439)
481 2wjy_A Regulator of nonsense t 80.4 1.7 5.7E-05 45.9 5.3 33 176-208 373-406 (800)
482 1tue_A Replication protein E1; 80.4 0.99 3.4E-05 39.3 3.0 23 175-198 60-82 (212)
483 2v9p_A Replication protein E1; 80.1 1.5 5.2E-05 40.6 4.4 29 173-205 126-154 (305)
484 1dek_A Deoxynucleoside monopho 80.1 1.3 4.3E-05 39.6 3.7 28 174-205 2-29 (241)
485 3hn7_A UDP-N-acetylmuramate-L- 80.0 1.8 6.1E-05 43.2 5.2 33 173-208 122-154 (524)
486 3dii_A Short-chain dehydrogena 79.9 1 3.4E-05 39.9 3.0 36 172-212 1-36 (247)
487 1p5z_B DCK, deoxycytidine kina 79.8 0.47 1.6E-05 42.6 0.8 27 171-198 22-48 (263)
488 4gp7_A Metallophosphoesterase; 79.7 1.1 3.7E-05 37.4 3.0 19 174-193 10-28 (171)
489 3pxi_A Negative regulator of g 79.6 2.5 8.6E-05 44.1 6.4 39 175-214 523-561 (758)
490 1znw_A Guanylate kinase, GMP k 79.4 1.3 4.6E-05 37.9 3.6 26 173-199 20-45 (207)
491 2qp9_X Vacuolar protein sortin 79.0 2 6.8E-05 40.5 4.9 33 174-210 85-117 (355)
492 1j6u_A UDP-N-acetylmuramate-al 79.0 1.8 6.2E-05 42.5 4.8 32 173-207 114-145 (469)
493 2fna_A Conserved hypothetical 79.0 2.2 7.4E-05 39.3 5.2 34 175-212 32-65 (357)
494 1hdo_A Biliverdin IX beta redu 78.9 18 0.00063 29.9 10.8 34 174-212 4-37 (206)
495 3lnc_A Guanylate kinase, GMP k 78.8 0.9 3.1E-05 39.8 2.3 25 173-198 27-52 (231)
496 1vt4_I APAF-1 related killer D 78.8 1.8 6.1E-05 47.0 4.9 39 173-212 150-191 (1221)
497 1sxj_C Activator 1 40 kDa subu 78.7 1.1 3.8E-05 41.7 3.0 36 176-212 49-84 (340)
498 1z6g_A Guanylate kinase; struc 78.6 1.2 4E-05 38.8 3.0 24 174-198 24-47 (218)
499 1hqc_A RUVB; extended AAA-ATPa 78.6 1.6 5.6E-05 39.9 4.1 34 175-212 40-73 (324)
500 3u61_B DNA polymerase accessor 78.3 1.9 6.4E-05 39.7 4.5 33 176-211 50-82 (324)
No 1
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.97 E-value=1.2e-30 Score=242.74 Aligned_cols=217 Identities=39% Similarity=0.647 Sum_probs=167.8
Q ss_pred ccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeee--ccCC
Q 016622 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYLG 244 (386)
Q Consensus 167 ~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~--~~~~ 244 (386)
.++++++++|+|+|+|||+||||+|+|||.+|+++|+||++||+|++++++..+++....... .....+.+. ..+|
T Consensus 12 ~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 89 (262)
T 2ph1_A 12 ERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKYG 89 (262)
T ss_dssp HHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTTC
T ss_pred hhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCCC
Confidence 456778999999999999999999999999999999999999999999888888876543110 011222222 4568
Q ss_pred ceEEecCCCCCcc---cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 245 VKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 245 l~vl~~~~~~~~~---~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
++++|.+...... ..+..+.....++++++.+.++.||||||||||+.++.......+..+|.+++|+.++..++..
T Consensus 90 l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 169 (262)
T 2ph1_A 90 IKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVI 169 (262)
T ss_dssp CEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHH
T ss_pred eEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHH
Confidence 9999977543221 1234445667888888877657899999999999987555444444679999999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCC--CceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~--~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.+.++.+++.+.+++|+|+|+++.... ......+.+...+++.+.+|.++++.||+++.+.++
T Consensus 170 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a 235 (262)
T 2ph1_A 170 VEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKL 235 (262)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHh
Confidence 9999999999999999999999875321 112222334568899999999999999999998875
No 2
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.96 E-value=9.4e-29 Score=226.79 Aligned_cols=199 Identities=16% Similarity=0.238 Sum_probs=150.5
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCccCC-Cccc--cccc----CCCC----Ccee
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PENR--LLEM----NPEK----RTII 238 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~~sl~~~lg-~~~~--~~~~----~~~~----~~i~ 238 (386)
+++++|+|+|+|||+||||+|+|||.+||++ |+||++||+|++.++++.+|+ .... +.+. .... ..+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 4678999999999999999999999999998 999999999999889988884 2221 1100 0000 1123
Q ss_pred eeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch
Q 016622 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (386)
Q Consensus 239 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s 318 (386)
....+|++++|.+........+. ...+.++++.++ +.|||||||+||+.+...... +..+|.+++|+.++..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 34567999999775433322222 234555555554 689999999999987654443 55679999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCCh-hhhhc
Q 016622 319 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TVSYM 385 (386)
Q Consensus 319 ~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~-~i~~a 385 (386)
+..+.++++.+++.+ ...+|+|+||++.... ...+++.+.+|.++++.||+++ .+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a 215 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQES 215 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHH
Confidence 999999999999887 5679999999875432 1347888999999999999996 56554
No 3
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.96 E-value=2.2e-28 Score=223.35 Aligned_cols=199 Identities=20% Similarity=0.276 Sum_probs=152.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc---cc----ccCCCCCceeeeccCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 244 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~---~~----~~~~~~~~i~~~~~~~ 244 (386)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+||.... +. ......+.+.+...++
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 5689999999999999999999999999999999999999998898888887543 11 1111122333333479
Q ss_pred ceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
++++|.... .....+.. ...+.++++.++ ++|||||||+||+.+...... +..+|.+++|+.++..++.++.+
T Consensus 81 l~~lp~~~~-~~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVD-WEHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCS-HHHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCc-cchhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 999983322 11111110 234556666665 789999999999988544433 56679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.++.+++.+.++.|+|+|+++..... ...+++.+.+|.++++.||+++.+.++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a 206 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREG 206 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHH
Confidence 99999988889999999998765421 346788889999999999999988765
No 4
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.95 E-value=2e-28 Score=226.65 Aligned_cols=202 Identities=17% Similarity=0.205 Sum_probs=150.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--------cccCCCCCceee-ecc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP-TEY 242 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--------~~~~~~~~~i~~-~~~ 242 (386)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.++|..... .......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 57899999999999999999999999999999999999999888999888876431 001111122222 234
Q ss_pred CCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCC-CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
++++++|.+.... ...+. ...+.++++.++ . .|||||||+||+.+..... .+..+|.+++|+.++..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~--~l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALM--ALYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHH--HHHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHH--HHHhCCEEEEEecCChhHHHH
Confidence 7999999876532 12222 234555555554 5 8999999999998864443 356789999999999999999
Q ss_pred HHHHHHHHHcCCC--------CeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 322 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~~~~--------~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++++.++..+. ...|+|+|+++....... .....+++.+.+|.++++.||+++.+.++
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a 220 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRA 220 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT----SSCCHHHHHHHHCSEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCccccccc----cccCHHHHHHHhCCceEEecCCChhHHHH
Confidence 9999999987652 578999999875431000 00135889999999999999999998765
No 5
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.95 E-value=5.6e-27 Score=223.03 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=147.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc-cc----ccC-----CCCCceeeec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL----EMN-----PEKRTIIPTE 241 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~-~~----~~~-----~~~~~i~~~~ 241 (386)
.+|+|+|+ |||||||||+|+|||.+||++|+||++||+|+++++...+.+.... .. ... .....+....
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 46899998 7999999999999999999999999999999998776544332211 00 000 0111223344
Q ss_pred cCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
..++++++.+....... +........+..+.+...++.||||++|++++.....+. ..+.++|.+++|++++..++.+
T Consensus 126 ~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~~ 203 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIYA 203 (314)
T ss_dssp GGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHHH
T ss_pred CCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHHH
Confidence 56889998775433322 233444556666665555689999999999887643332 3366789999999999999999
Q ss_pred HHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 322 VAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++++.++.. +.++.|+|+|+.... ...+++++.++.++++.||+++.++++
T Consensus 204 ~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-----------~~v~~~a~~~~~~~lg~IP~d~~Vr~a 260 (314)
T 3fwy_A 204 MNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----------DEVDRFCKETNFRRLAHMPDLDAIRRS 260 (314)
T ss_dssp HHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----------HHHHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCch-----------hHHHHHHHHhCCeEEEEecCchHHHHH
Confidence 99888877653 566789999986532 347889999999999999999999875
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.95 E-value=1.1e-27 Score=222.41 Aligned_cols=198 Identities=24% Similarity=0.269 Sum_probs=149.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc---cc----ccCCCCCceeeeccCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 244 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~---~~----~~~~~~~~i~~~~~~~ 244 (386)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+||.... +. ......+.+.+ ...+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 5689999999999999999999999999999999999999998898888887543 11 11111222222 2468
Q ss_pred ceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 016622 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (386)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~ 324 (386)
++++|............ ...+.++++.+. +.|||||||+||+.+...... +..+|.+++|+.++..++.++.+
T Consensus 80 l~~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLRKAN----PEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHHHHC----HHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhhccC----hHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999432211111100 345555665555 789999999999988544433 55679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 325 ~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
.++.+++.+.+..|+|+|+++..... ...+++.+.+|.++++.||+++.+.++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a 205 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRA 205 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 99999888889999999998754311 246788888999999999999988765
No 7
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.95 E-value=2.4e-27 Score=220.71 Aligned_cols=202 Identities=21% Similarity=0.119 Sum_probs=136.6
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc---------cc----ccccCCCCCce
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKRTI 237 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~---------~~----~~~~~~~~~~i 237 (386)
+++++|+|+|+|||+||||+|+|||.+|| +|+||++||+|++++....+++.. .. +.......+.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 56799999999999999999999999999 999999999999885544432111 00 11111222333
Q ss_pred eeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc
Q 016622 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (386)
Q Consensus 238 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~ 317 (386)
... .+|++++|.+.................+.++++.+. +.|||||||+||+.+...... +..+|.+++|++++..
T Consensus 104 ~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~~~ 179 (267)
T 3k9g_A 104 INV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAEKW 179 (267)
T ss_dssp EEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESCTT
T ss_pred ccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCChH
Confidence 333 479999998754332211111112346777777776 799999999999997654433 5668999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-eEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcC
Q 016622 318 AFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYMI 386 (386)
Q Consensus 318 s~~~~~~~~~~l~~~~~~-i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~ai 386 (386)
++..+.++++.+++.+.+ .+++|+||+..... .+...+.+.+ +.++++.||+++.+.+++
T Consensus 180 s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~-------~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~ 240 (267)
T 3k9g_A 180 AVESLDLFNFFVRKLNLFLPIFLIITRFKKNRT-------HKTLFEILKT--KDRFLGTISEREDLNRRI 240 (267)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCS-------CCHHHHHHTT--STTEEEEEEC--------
T ss_pred HHHHHHHHHHHHHHHhccCCEEEEEecccCcch-------HHHHHHHHhc--CcccceecCcHHHHHHHH
Confidence 999999999999988543 35799999843221 1122333333 789999999999998764
No 8
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.94 E-value=1.7e-26 Score=217.09 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=136.0
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------ccccCCCCCceeeeccCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~~~~~~~i~~~~~~~ 244 (386)
+..++|+|+|+|||+||||+|+|||..||+.|+||+|||+|+++++++.+|+.... +.......+.+.+...++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 34579999999999999999999999999999999999999999999988887643 222234455666667789
Q ss_pred ceEEecCCCCC-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHH
Q 016622 245 VKLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 245 l~vl~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~ 322 (386)
++++|.+.... ....+.... +.++++.++ +.||+|||||||..... ...+ ...+|.+++|+.++..+...+
T Consensus 170 l~vl~~g~~~~~~~ell~~~~----l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~l--~~~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSER----FAELVNWAS-KNYDLVLIDTPPILAVTDAAIV--GRHVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSHH----HHHHHHHHH-HHCSEEEEECCCTTTCTHHHHH--TTTCSEEEEEEETTTSBHHHH
T ss_pred EEEEeCCCCCCCHHHHhchHH----HHHHHHHHH-hCCCEEEEcCCCCcchHHHHHH--HHHCCeEEEEEeCCCCcHHHH
Confidence 99999886543 333444444 444444444 78999999999977532 2222 334699999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
.+.++.+++.+.+++|+|+|+++....+
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~~~ 270 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRASA 270 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCCCT
T ss_pred HHHHHHHHhCCCCEEEEEEcCccccccC
Confidence 9999999999999999999999866543
No 9
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.94 E-value=6.4e-26 Score=215.47 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=141.9
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c----cc------cCCCCCce
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LE------MNPEKRTI 237 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~----~~------~~~~~~~i 237 (386)
...+++|+|+ +|||+||||+|+|||.+||++|+||++||+|++++ +...++.... + .. .....+.+
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~-~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD-STFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC-TTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHhCccCCCCHHHHHhhccccccCCCHHHhh
Confidence 3467899999 89999999999999999999999999999999874 4444443211 0 00 01111222
Q ss_pred eeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHh--cCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC
Q 016622 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT--TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (386)
Q Consensus 238 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~ 315 (386)
....+|++++|++........ .. .......++++. +. +.||||||||||+...... ...+..+|.+++|++++
T Consensus 116 -~~~~~~l~vlp~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~ 190 (307)
T 3end_A 116 -FEGFNGVMCVEAGGPPAGTGC-GG-YVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND 190 (307)
T ss_dssp -EECGGGCEEEECCCCCSSSSC-TT-HHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS
T ss_pred -ccCCCCceEEECCCccccccc-ch-hhhHHHHHHHHhhhcc-ccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCc
Confidence 235679999998764322211 11 112222334433 33 7899999999998764322 12355679999999999
Q ss_pred cchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 316 KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 316 ~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
..++..+.++++.+++ .+.+++|+|+||++.. ...+++.+.+|+++++.||+++.+.++
T Consensus 191 ~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----------~~~~~~~~~~g~~v~~~Ip~~~~v~~a 253 (307)
T 3end_A 191 FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----------DEVDRFCKETNFRRLAHMPDLDAIRRS 253 (307)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----------HHHHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----------HHHHHHHHHcCCCceeeCCccHHHHHH
Confidence 9999999999999986 3567899999998732 347888999999999999999998765
No 10
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.94 E-value=1.6e-26 Score=212.22 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=143.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccccc----CC------------------
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NP------------------ 232 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~----~~------------------ 232 (386)
.|+| |+|||+||||+|+|||..||++|+||++||+|++ ++++.+||........ ..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 7899999999999999999999999999999997 7888888865432100 00
Q ss_pred CCCceee----eccCCceE-EecCCCCCcccccCCchHHHHHHHHHHhc-CCCCCcEEEEcCCCCCChHHHhhhhhcCCC
Q 016622 233 EKRTIIP----TEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTT-EWGELDYLVIDMPPGTGDIQLTLCQVVPLT 306 (386)
Q Consensus 233 ~~~~i~~----~~~~~l~v-l~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d 306 (386)
..-...+ ....++++ ++.+.......... ......+.++++.+ . ++||||||||||+.+.... ..+..+|
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~~~~--~~l~~aD 155 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY-CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEHLTR--GTAKAVD 155 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC-HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTTCCH--HHHTTCS
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCC-cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccHHHH--HHHHHCC
Confidence 0000111 12346777 77664322111111 11113466666665 4 8999999999999876433 3356789
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhC-CCeEEecCCChhhhhc
Q 016622 307 AAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTVSYM 385 (386)
Q Consensus 307 ~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g-~pvl~~IP~d~~i~~a 385 (386)
.+++|+.++..++..+.++.+.+++.+...+++|+||++.. ...+++.+.++ .++.+.||+++.+.++
T Consensus 156 ~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a 224 (254)
T 3kjh_A 156 MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIEL 224 (254)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSC
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHH
Confidence 99999999999999999999999998988899999998732 24677888887 8899999999998876
No 11
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.94 E-value=4.8e-27 Score=217.64 Aligned_cols=198 Identities=21% Similarity=0.299 Sum_probs=141.2
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c---cccCCCCCceeeeccCCc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIPTEYLGV 245 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~---~~~~~~~~~i~~~~~~~l 245 (386)
+.+++|+|+|+|||+||||+|+|||..|+++|+||++||+|+++ ++..+++.... + .......+.+.+ .+++
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 35689999999999999999999999999999999999999975 56666765432 1 000112222333 5799
Q ss_pred eEEecCCCCCcc--cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 246 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 246 ~vl~~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++|.+...... ...... ..+.++++. +.||||||||||+.+...... +..+|.+++|+.++..++..+.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999876532211 111110 344454433 689999999999988654433 4567999999999999999888
Q ss_pred HHHHHHHc------CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhc
Q 016622 324 KGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTVSYM 385 (386)
Q Consensus 324 ~~~~~l~~------~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl-~~IP~d~~i~~a 385 (386)
++++.+++ .+.++.|+|+|+++.... ..+...+.+.+.+|.+++ +.||+++.+.++
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~------~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a 215 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRTL------LAQQVEAQLRAHFGEKVFWTVIPRNVRLAEA 215 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTCS------HHHHHHHHHHHHHGGGBCSCCCBCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCcH------HHHHHHHHHHHHccccccCccCCCcHHHHHH
Confidence 88877754 256778999999875431 112345677888898876 789999988765
No 12
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.93 E-value=8e-26 Score=201.63 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=130.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
||+|+|+|+|||+||||+|.|||..|+++|+||++||+|++++.. .+++. ...++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-~~~~~-----------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-NWSKA-----------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHHTT-----------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-HHHhc-----------------CCCCCcEEecCc
Confidence 579999999999999999999999999999999999999876433 22221 112477777542
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~ 332 (386)
..+.++++.+. ++|||||||+||+.+...... +..+|.+++|+.++..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 34555555555 689999999999997554444 55579999999999999 9999999999876
Q ss_pred C-----CCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhc
Q 016622 333 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTVSYM 385 (386)
Q Consensus 333 ~-----~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl-~~IP~d~~i~~a 385 (386)
+ .++ |+|+||++.... . .....+..+.+|.+++ +.||+++.+.++
T Consensus 125 ~~~~~~~~~-~vv~N~~~~~~~--~-----~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a 175 (206)
T 4dzz_A 125 QAYSRKVEA-RFLITRKIEMAT--M-----LNVLKESIKDTGVKAFRTAITQRQVYVKS 175 (206)
T ss_dssp SCGGGCCEE-EEEECSBCTTEE--E-----EHHHHHHHHHHTCCBCSSCCBCCHHHHHH
T ss_pred HHhCCCCcE-EEEEeccCCCch--H-----HHHHHHHHHHcCCceeeccccccHHHHHH
Confidence 4 344 999999885432 1 1235666677899999 899999988765
No 13
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.93 E-value=5.2e-26 Score=211.70 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=138.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------cccc---CCCCCceeeeccC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM---NPEKRTIIPTEYL 243 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~---~~~~~~i~~~~~~ 243 (386)
|++|+| ++|||+||||+|+|||.+||++|+||++||+|++++....+++.... +... ....+ +.....+
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~i~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDS-ILKEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHH-HCEECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHH-hhccCCC
Confidence 479999 68999999999999999999999999999999999887766654322 0000 01111 1234467
Q ss_pred CceEEecCCCCCcccccCCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh-hhhcCCCeEEEEeCCCcchHHH
Q 016622 244 GVKLVSFGFSGQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 244 ~l~vl~~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~-~~~~~~d~vviV~~~~~~s~~~ 321 (386)
|++++|.+............. ....+.+.++.+. ++||||||||||+.....+.. .....+|.+++|+.++..++..
T Consensus 79 ~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 157 (269)
T 1cp2_A 79 GIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYA 157 (269)
T ss_dssp GCEEEECCCCCTTSSCHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHH
T ss_pred CeeEEeCCCchhhccccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHH
Confidence 999999875432211000000 0011222233333 679999999998664321111 1113579999999999999999
Q ss_pred HHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 322 VAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 322 ~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
+.++++.+++. +.+++|+|+|+++... .+...+++.+.+|.++++.||+++.+.++
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--------~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a 217 (269)
T 1cp2_A 158 ANNISKGIQKYAKSGGVRLGGIICNSRKVAN--------EYELLDAFAKELGSQLIHFVPRSPMVTKA 217 (269)
T ss_dssp HHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--------CHHHHHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeecCCcch--------hHHHHHHHHHHcCCcccccCCCCcHHHHH
Confidence 98888887653 5678899999986322 12356788889999999999999988765
No 14
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.93 E-value=6.8e-26 Score=211.57 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=129.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc------cccCCCCCceeeeccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMNPEKRTIIPTEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~------~~~~~~~~~i~~~~~~~l 245 (386)
.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|+++++++.+|+..... .......+.+.+...+++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 45799999999999999999999999999999999999999999998888865431 111112234445555899
Q ss_pred eEEecCCCCCc-ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 246 ~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++|.+..... ...+..+ .+.++++.++ +.||||||||||..... ...+ ...+|.+++|+.++..+...+.
T Consensus 161 ~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l--~~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSR----AFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLF--SKFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHH--HHHHCEEEEEEETTSCCHHHHH
T ss_pred EEEECCCCCCCHHHHhChH----HHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHH--HHHCCEEEEEEeCCCCcHHHHH
Confidence 99998865332 2333444 3444444444 78999999999976421 1222 2235999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCC
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDAD 349 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~ 349 (386)
+.++.+++.+.+++|+|+|+++....
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~~~ 259 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKDKS 259 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC---
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCCCC
Confidence 99999999999999999999986554
No 15
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.93 E-value=1.2e-25 Score=211.84 Aligned_cols=200 Identities=21% Similarity=0.183 Sum_probs=137.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc--c---cccC-----CCCCceeeecc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN-----PEKRTIIPTEY 242 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~--~---~~~~-----~~~~~i~~~~~ 242 (386)
|++|+| ++|||+||||+|+|||.+||++|+||++||+|++++.+..+++.... + .... .....+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 479999 58999999999999999999999999999999999887766554322 1 1100 00011223446
Q ss_pred CCceEEecCCCCCcccccCCchHHHH--HHHHHHhcC--CCCCcEEEEcCCCCCChHHHh-hhhhcCCCeEEEEeCCCcc
Q 016622 243 LGVKLVSFGFSGQGRAIMRGPMVSGV--INQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKL 317 (386)
Q Consensus 243 ~~l~vl~~~~~~~~~~~~~~~~~~~~--l~~ll~~~~--~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~vviV~~~~~~ 317 (386)
+|++++|.+....... ...... ..++++.+. .++||||||||||......+. ......+|.+++|++++..
T Consensus 81 ~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 81 GGVKCVESGGPEPGVG----CAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GGCEEEECCCCCTTTC----CHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHH
T ss_pred CCeEEEeCCCcccccc----ccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHH
Confidence 7999999775422111 111111 113333331 268999999999865422111 1112357999999999999
Q ss_pred hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhc
Q 016622 318 AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSYM 385 (386)
Q Consensus 318 s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~a 385 (386)
++..+.++++.+++ .+.++.|+|+|+++... .+...+.+.+.+|.++++.||+++.+.++
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--------~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a 220 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR--------EDELIIALANKLGTQMIHFVPRDNVVQRA 220 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT--------HHHHHHHHHHHHTSCEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh--------HHHHHHHHHHHcCccccccCCCchhHHHH
Confidence 99999888877764 36778999999975321 12356788889999999999999988765
No 16
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.93 E-value=2e-25 Score=211.31 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=131.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc------ccccCCCCCceeeeccCCc
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~------~~~~~~~~~~i~~~~~~~l 245 (386)
.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|+++++++.+|+.... +.......+.+.+...+++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4579999999999999999999999999999999999999999999888886543 1111122234555556899
Q ss_pred eEEecCCCCCcc-cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHH
Q 016622 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (386)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~ 323 (386)
+++|.+...... ..+... .+.++++.++ ++||||||||||..... ...+ ...+|.+++|+.++..+...+.
T Consensus 183 ~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l--~~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV--GRSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHH--GGGCSEEEEEEETTTSCTTHHH
T ss_pred EEEECCCCCCCHHHHhCHH----HHHHHHHHHH-hCCCEEEEcCCCCchhHHHHHH--HHHCCEEEEEEcCCCChHHHHH
Confidence 999987654332 333434 4444554444 78999999999977521 1222 2346999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCcCCCC
Q 016622 324 KGVRMFSKLKVPCIAVVENMCHFDAD 349 (386)
Q Consensus 324 ~~~~~l~~~~~~i~gvVlN~~~~~~~ 349 (386)
+.++.+++.+.+++|+|+|+++....
T Consensus 256 ~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 256 LSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 99999999999999999999987653
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.92 E-value=2.7e-25 Score=210.08 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=144.7
Q ss_pred CceEEEEEe--CcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC---CCccCCCccc---cc---ccCCCCCceeee
Q 016622 172 ISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS---LPTMVSPENR---LL---EMNPEKRTIIPT 240 (386)
Q Consensus 172 ~~kvI~v~s--~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s---l~~~lg~~~~---~~---~~~~~~~~i~~~ 240 (386)
+.++|+|++ +|||+||||+|+|||..|+++|+||++||+|++++. +...++.... +. ........+...
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 112 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHL 112 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEES
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhccc
Confidence 456899998 899999999999999999999999999999999864 2233443211 10 001112223322
Q ss_pred ccCCceEEecCCCCCccccc----CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc
Q 016622 241 EYLGVKLVSFGFSGQGRAIM----RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (386)
Q Consensus 241 ~~~~l~vl~~~~~~~~~~~~----~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~ 316 (386)
.+|++++|++........+ ........+.++++.+. ++||||||||||+.+...... +..+|.+++|+.++.
T Consensus 113 -~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~ 188 (298)
T 2oze_A 113 -TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAEE 188 (298)
T ss_dssp -SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGGG
T ss_pred -CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCcH
Confidence 4799999977533221111 11122345778887776 789999999999998654433 446899999999999
Q ss_pred chHHHHHHHHHHHHc------CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCC--CeE-EecCCChhhhhc
Q 016622 317 LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTVSYM 385 (386)
Q Consensus 317 ~s~~~~~~~~~~l~~------~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~--pvl-~~IP~d~~i~~a 385 (386)
.++..+.++++.+++ .+.+++|+|+||++.... ..+...+++.+.++. +++ ..||++..+.++
T Consensus 189 ~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a 260 (298)
T 2oze_A 189 ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA------TIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTW 260 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH------HHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH------HHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 999999999888866 367889999999876431 112356778888886 554 589999888765
No 18
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.92 E-value=9.5e-26 Score=222.38 Aligned_cols=206 Identities=18% Similarity=0.180 Sum_probs=119.3
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHH------HCCCcEEEEEcCCCCCCCCccCCCcccccc---------------
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLLE--------------- 229 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La------~~G~rVllID~D~~~~sl~~~lg~~~~~~~--------------- 229 (386)
.++++|+|+|+|||+||||+|+|||.+|| ++|+||++||+|+++ +++.+||.......
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCCH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 46789999999999999999999999999 689999999999976 78888876542110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcc---------cccC-CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMR-GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 299 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~---------~~~~-~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~ 299 (386)
.......+.+...+|++++|++...... ..+. .......++++++.+. ++||||||||||+++.....
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~- 265 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLN- 265 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHH-
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHH-
Confidence 0011234555566899999987642100 0011 1111224456666665 78999999999999855443
Q ss_pred hhhcCCCeEEEEeCCCcchHHHHHH-------HHHHHHcC--CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCC
Q 016622 300 CQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 300 ~~~~~~d~vviV~~~~~~s~~~~~~-------~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 370 (386)
.+..+|.+++|++|+..++..+.+ .++.+++. +.++.|++.|+....... ..+...+.+.+.+|.
T Consensus 266 -al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~-----~~~~~~~~~~~~~g~ 339 (403)
T 3ez9_A 266 -GLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR-----DHETSHSLAREVYAS 339 (403)
T ss_dssp -HHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH-----HHHHHHHHHHHHHTT
T ss_pred -HHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch-----hHHHHHHHHHHHhhH
Confidence 356789999999999886654444 44444544 444555544333222210 011245677888999
Q ss_pred CeE-EecCCChhhhhc
Q 016622 371 PHL-FDLPIRPTVSYM 385 (386)
Q Consensus 371 pvl-~~IP~d~~i~~a 385 (386)
+++ +.||+++.+.++
T Consensus 340 ~vl~~~IP~~~~v~~a 355 (403)
T 3ez9_A 340 NILDSSLPRLDGFERC 355 (403)
T ss_dssp SEECCC----------
T ss_pred hhhceeCCchHHHHHH
Confidence 998 899999998875
No 19
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.92 E-value=8.1e-25 Score=212.58 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=121.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcc---------------------cccc--
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLE-- 229 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~---------------------~~~~-- 229 (386)
||+|+|+|+|||+||||+|+|||..||++|+||++||+|++++....+++... .+.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 58999999999999999999999999999999999999999877666654321 1111
Q ss_pred ------cCCCCC--ceeeeccCCceEEecCCCCCccccc-C--------Cc----hHHHHHHHHHHhcC-CCCCcEEEEc
Q 016622 230 ------MNPEKR--TIIPTEYLGVKLVSFGFSGQGRAIM-R--------GP----MVSGVINQLLTTTE-WGELDYLVID 287 (386)
Q Consensus 230 ------~~~~~~--~i~~~~~~~l~vl~~~~~~~~~~~~-~--------~~----~~~~~l~~ll~~~~-~~~yD~VIID 287 (386)
.....+ .+.....+|++++|++......... . +. .....+.++++.++ +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 011111 2334445699999987543322111 0 00 00123555665554 1389999999
Q ss_pred CCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--------------------C--------------
Q 016622 288 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--------------------K-------------- 333 (386)
Q Consensus 288 tpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~--------------------~-------------- 333 (386)
|||+++..... .+..+|.+++|+.++..++..+.++++.+++. +
T Consensus 161 ~pP~l~~~~~~--aL~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRT--VLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHH--HHTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHH--HHHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 99999855444 36678999999999999999998888777554 1
Q ss_pred ---CCeEEEEEcCCcCCC
Q 016622 334 ---VPCIAVVENMCHFDA 348 (386)
Q Consensus 334 ---~~i~gvVlN~~~~~~ 348 (386)
.+++|+|+|+++...
T Consensus 239 ~~~l~~lG~v~n~~~~r~ 256 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRR 256 (361)
T ss_dssp SSCCEEEEEEECC-----
T ss_pred ccccceeeEEEEcchhhc
Confidence 778999999988765
No 20
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.92 E-value=5.5e-26 Score=223.74 Aligned_cols=206 Identities=16% Similarity=0.188 Sum_probs=140.9
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCCCCCCCCccCCCccccc-----------cc---
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRLL-----------EM--- 230 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~~~~sl~~~lg~~~~~~-----------~~--- 230 (386)
.++++|+|+|+|||+||||+|+|||.+||. +|+||++||+|+++ +++.+||...... ..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhccc
Confidence 467899999999999999999999999994 79999999999965 6777777643210 00
Q ss_pred -CCCCCceeeeccCCceEEecCCCCCcc----------cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh
Q 016622 231 -NPEKRTIIPTEYLGVKLVSFGFSGQGR----------AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 299 (386)
Q Consensus 231 -~~~~~~i~~~~~~~l~vl~~~~~~~~~----------~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~ 299 (386)
....+.+.+...+|++++|++...... ...........++++++.+. ++||||||||||+++......
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~ 263 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKNA 263 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHHH
Confidence 001223455566899999987642100 00011111234456666665 799999999999998665544
Q ss_pred hhhcCCCeEEEEeCCCcchHHHHHH-------HHHHHHcC--CCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCC
Q 016622 300 CQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 300 ~~~~~~d~vviV~~~~~~s~~~~~~-------~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 370 (386)
+..+|.+++|++|+..++..+.+ .++.+++. +.++.|+|.|+....... ..+...+++.+.+|.
T Consensus 264 --l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 264 --LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVFGG 336 (398)
T ss_dssp --HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHHGG
T ss_pred --HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHhcc
Confidence 55789999999999886554444 44444444 455667776665543211 011346778888999
Q ss_pred CeE-EecCCChhhhhc
Q 016622 371 PHL-FDLPIRPTVSYM 385 (386)
Q Consensus 371 pvl-~~IP~d~~i~~a 385 (386)
+++ +.||+++.+.++
T Consensus 337 ~vl~~~IP~~~~i~~a 352 (398)
T 3ez2_A 337 DMLDVFLPRLDGFERC 352 (398)
T ss_dssp GBCSCCEECCHHHHHH
T ss_pred cccceeccchHHHHHH
Confidence 888 799999998875
No 21
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.91 E-value=6.4e-25 Score=214.29 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=136.1
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccc--cc---c-C--------CCCCc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LE---M-N--------PEKRT 236 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~--~~---~-~--------~~~~~ 236 (386)
+.+++|+|+|+|||+||||+|+|||..||++|+||++||+| ..++++.++|..... .+ . . ...+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~ 219 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESC 219 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHH
Confidence 46789999999999999999999999999999999999999 677888888876441 00 0 0 01112
Q ss_pred eeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc
Q 016622 237 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (386)
Q Consensus 237 i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~ 316 (386)
+ .....|++++|++........+........++.+.. ++.||||||||||+.+.....+ +..+|.+++|++|+.
T Consensus 220 i-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 220 I-KQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGSQ 293 (373)
T ss_dssp C-EECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCCH
T ss_pred h-hcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCCc
Confidence 2 223479999998765544444444444445555442 3689999999999998665554 567799999999999
Q ss_pred ch---HHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 317 LA---FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 317 ~s---~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
.+ +.++.+.++.++.. . .+++|.|++..... +. ...+++.+..+++++|.||+|+...
T Consensus 294 ~s~~~l~~~~~~l~~l~~~-~-~~~vv~N~~~v~~~------~~-~~~~~fl~~~~l~~lG~IP~D~~~~ 354 (373)
T 3fkq_A 294 LSNYKFMRAYESVVLLEQN-D-DINIIRNMNMIYNK------FS-NKNSEMLSNISIKTIGGAPRYEHAT 354 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTS-T-TCCCGGGEEEEECS------CC-TTTCCCCCSCSCEEEEECCCCTTCC
T ss_pred hHHHHHHHHHHHHHHhccc-C-CcEEEehhHHHHHH------HH-HHHHHHhhcCCccceeecCCCCCcC
Confidence 88 55666666666552 2 25666666432110 00 1122223346899999999998754
No 22
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.91 E-value=3.2e-24 Score=207.40 Aligned_cols=202 Identities=20% Similarity=0.218 Sum_probs=136.3
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+.+++|+|+|+|||+||||+|+|||..||++|+||++||+|+ +++++.+|+........ .....++++....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~-------~v~g~~~l~~~~i 94 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDIFEQEFGHEPT-------KVKGYDNLYVVEI 94 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHHHCSCCCSSCE-------ECTTCSSEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHhCCCCCcCcc-------ccccccceeeecc
Confidence 456899999999999999999999999999999999999999 56888887764221000 0000122222211
Q ss_pred CCC-----------------------CC----cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhh--
Q 016622 251 GFS-----------------------GQ----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLC-- 300 (386)
Q Consensus 251 ~~~-----------------------~~----~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~-- 300 (386)
... .. ......+......+.++.+.+.+.+||||||||||+.+...+ .+.
T Consensus 95 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~ 174 (349)
T 3ug7_A 95 DPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEV 174 (349)
T ss_dssp CHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHH
Confidence 100 00 000112222223344444444447999999999996532100 000
Q ss_pred --------------------------------------------------------hhc--CCCeEEEEeCCCcchHHHH
Q 016622 301 --------------------------------------------------------QVV--PLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 301 --------------------------------------------------------~~~--~~d~vviV~~~~~~s~~~~ 322 (386)
.+. ..+.+++|++|+..++.++
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~ 254 (349)
T 3ug7_A 175 MDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILES 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHH
Confidence 011 1378999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCCCC-----CceecccCCChHHHHHHHhCCCeEEecCCChh
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~~~-----~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~ 381 (386)
.+.++.+++.|+++.|+|+||+.+... +..+..+ +...+++++.++.+.++.||+++.
T Consensus 255 ~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~l~~iPl~~~ 317 (349)
T 3ug7_A 255 ERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ-LKRLEMIKEKFGDKVIAYVPLLRT 317 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHSTTSEEEEEECCSS
T ss_pred HHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH-HHHHHHHHHHcCCCcEEEecCCCC
Confidence 999999999999999999999887632 1111223 457899999999999999999864
No 23
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=4.1e-24 Score=204.67 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=131.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCc----eee---------
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRT----IIP--------- 239 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~----i~~--------- 239 (386)
+++|+|+|+|||+||||+|+|||.++|++|+||++||+|+ +++++.+|+.............. +.+
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~~ 91 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQA 91 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHHH
Confidence 4799999999999999999999999999999999999999 67888888764210000000000 000
Q ss_pred -eccCCceEEecCCCCC-----cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-Hhhh------------
Q 016622 240 -TEYLGVKLVSFGFSGQ-----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLC------------ 300 (386)
Q Consensus 240 -~~~~~l~vl~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~~~~------------ 300 (386)
.......+++.+.... ....+.+......+.++.+.+.+.+||+|||||||+.+... +.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~ 171 (324)
T 3zq6_A 92 KLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIK 171 (324)
T ss_dssp HC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 0000011222221100 00112233333344444444334799999999999432100 0000
Q ss_pred --------------------------------------------hhcC--CCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 016622 301 --------------------------------------------QVVP--LTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (386)
Q Consensus 301 --------------------------------------------~~~~--~d~vviV~~~~~~s~~~~~~~~~~l~~~~~ 334 (386)
.+.. .+.+++|++|+..++.++.+.++.+++.|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi 251 (324)
T 3zq6_A 172 IRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSI 251 (324)
T ss_dssp HHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCC
Confidence 0111 258999999999999999999999999999
Q ss_pred CeEEEEEcCCcCCCCC-----ceecccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 335 PCIAVVENMCHFDADG-----KRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 335 ~i~gvVlN~~~~~~~~-----~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
++.|+|+||+.+.... ..+..+ ...++++.+.++.+.++.||+.+
T Consensus 252 ~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 252 HADGVIVNQVLPEESDCEFCNARRKLQ-QERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHTTTSEEEEEECCS
T ss_pred CccEEEEcCCccccCCChHHHHHHHHH-HHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999998875321 111222 35788999999999999999865
No 24
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.90 E-value=2.8e-25 Score=209.08 Aligned_cols=197 Identities=18% Similarity=0.138 Sum_probs=130.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCc-eEEec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l-~vl~~ 250 (386)
|+++|+|+|+|||+||||+|+|||..|+++|+||++||+|+.++++..+++....+.... . .....++ +++|.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~----~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--K----IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--T----CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--c----ccCCCchheEeeC
Confidence 678999999999999999999999999999999999999996677777776443211100 0 0012366 66764
Q ss_pred CC--CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 016622 251 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (386)
Q Consensus 251 ~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~ 328 (386)
+. ...... ......+.++++.+. +.||||||||||+.+..... .+..+|.+++|+.++..++..+.++++.
T Consensus 77 ~~~~~~~~~~----~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~--~l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPE----EEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRM--AHGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCH----HHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHH--HHHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhh----hhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHH--HHHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 111111 112335556666555 78999999999998754443 3667899999999999887765544443
Q ss_pred -------------H---Hc-------CC-CCeEEEEEcCCcCCC-CCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 016622 329 -------------F---SK-------LK-VPCIAVVENMCHFDA-DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVS 383 (386)
Q Consensus 329 -------------l---~~-------~~-~~i~gvVlN~~~~~~-~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~ 383 (386)
+ ++ .+ .+ +++|+||++... ..... -...++++++.+|.++.+.||++..+.
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~Ip~~~~~~ 225 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATTEARNRKR---LEDRLNALAKRVGFRIGPGLRDRVIYR 225 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTCCGGGHHH---HHHHHHHHHHHHCCEEEECCCCCHHHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCCCcchhHH---HHHHHHHHHHHcCCccCCCCCchHHHH
Confidence 3 21 13 33 679999987643 11000 001223333348988889999999887
Q ss_pred hc
Q 016622 384 YM 385 (386)
Q Consensus 384 ~a 385 (386)
++
T Consensus 226 ~a 227 (286)
T 2xj4_A 226 EL 227 (286)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 25
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.89 E-value=2e-23 Score=187.47 Aligned_cols=162 Identities=22% Similarity=0.241 Sum_probs=121.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
++|+|+|+|||+||||+|+|||..|+++| ||++||+|++++ +..+++. . + . ..++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~~~-~---------~--l-----~~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWGKR-G---------S--L-----PFKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHHHH-S---------C--C-----SSEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHhcC-C---------C--C-----CcceeCHH--
Confidence 48999999999999999999999999999 999999999863 3333332 0 0 0 11445421
Q ss_pred CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCC-CChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 016622 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~-~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~ 332 (386)
.++.+ . +.||||||||||+ .+...... +..+|.+++|+.++..++..+.++++.+++.
T Consensus 60 --------------~l~~l----~-~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY----A-PKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH----G-GGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh----h-hcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 33333 2 7899999999999 66544433 5567999999999999999999999999885
Q ss_pred -CCCeEEEEEcCCcCCC-CCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhc
Q 016622 333 -KVPCIAVVENMCHFDA-DGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTVSYM 385 (386)
Q Consensus 333 -~~~i~gvVlN~~~~~~-~~~~~~~~~~~~~~~i~~~~g~pvl-~~IP~d~~i~~a 385 (386)
+.+ +++|+||++... .. . ....+..+.+|.+++ +.||+++.+.++
T Consensus 119 ~~~~-~~vv~N~~~~~~~~~------~-~~~~~~l~~~g~~v~~~~Ip~~~~~~~a 166 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPSKD------G-DEARQLLTTAGLPLFKRGIKRYSAFQKA 166 (209)
T ss_dssp CSSS-EEEEECSBCCTTSCH------H-HHHHHHHHHTTCCBCSSCCBCCTHHHHH
T ss_pred cCCC-EEEEEEecCCccchH------H-HHHHHHHHHcCCchhhccCCCcHHHHHH
Confidence 555 889999987643 11 0 123344445899988 789999988765
No 26
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.87 E-value=3.6e-23 Score=200.20 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=114.3
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCccCCCccccc--ccCCCCCc----eeee-
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRT----IIPT- 240 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La--~~G~rVllID~D~~~~sl~~~lg~~~~~~--~~~~~~~~----i~~~- 240 (386)
....++|+|+|+|||+||||+|+|||..|| ++|+||++||+|++ ++++.+||.+.... ........ +.+.
T Consensus 14 ~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~ 92 (354)
T 2woj_A 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSA 92 (354)
T ss_dssp TCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHH
Confidence 345579999999999999999999999999 99999999999995 89888888653200 00000000 0000
Q ss_pred ---------c-----------cCCceEEecCCCCCc-ccccCCchHHHHHHHHHHhcCCC------CCcEEEEcCCC-CC
Q 016622 241 ---------E-----------YLGVKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GT 292 (386)
Q Consensus 241 ---------~-----------~~~l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~------~yD~VIIDtpp-~~ 292 (386)
. ..++++++.+..... ...+.+......+.++++.+.+. +|||||||||| |.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~ 172 (354)
T 2woj_A 93 ALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGH 172 (354)
T ss_dssp HHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHH
T ss_pred HHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchH
Confidence 0 003555542211000 01233333335666666665532 79999999999 42
Q ss_pred C-------hH--------------HHhhh---------------------------hhc--CCCeEEEEeCCCcchHHHH
Q 016622 293 G-------DI--------------QLTLC---------------------------QVV--PLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 293 ~-------~~--------------~~~~~---------------------------~~~--~~d~vviV~~~~~~s~~~~ 322 (386)
. +. ...+. .+. .+|.+++|++|+..++.++
T Consensus 173 tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea 252 (354)
T 2woj_A 173 TLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252 (354)
T ss_dssp HHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHH
Confidence 0 00 00000 000 4688999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCc
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCH 345 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~ 345 (386)
.++++.+++.++++.|+|+|++.
T Consensus 253 ~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 253 ERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCCEEEEecCC
Confidence 99999999999999999999998
No 27
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.86 E-value=1.4e-21 Score=176.71 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=120.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcc-CCCcc---c-ccccCCCCCceeeeccCCceEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPEN---R-LLEMNPEKRTIIPTEYLGVKLV 248 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~-lg~~~---~-~~~~~~~~~~i~~~~~~~l~vl 248 (386)
|+|+|+|.|||+||||+|+|||.+|+++|+||+++|. +....... .+... . ......... .....+..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp--~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 76 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP--VASGSEKTPEGLRNSDALALQRNSSLQL---DYATVNPYTF 76 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS--EEESCBCCTTSCBCHHHHHHHHTCSSCC---CHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc--eecCCccCCCCcChHHHHHHHHHhCCCC---ChhhcccEEe
Confidence 6999999999999999999999999999999999863 33221110 01000 0 000000000 0000011222
Q ss_pred ecCCCCCccccc-CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH---HhhhhhcC--CCeEEEEeCCCcchHHHH
Q 016622 249 SFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~---~~~~~~~~--~d~vviV~~~~~~s~~~~ 322 (386)
..+........+ ........+.+.++.+. ++||||||||||+++... .....+.. .+.+++|+.++..++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 77 AEPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHA 155 (224)
T ss_dssp SSCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHH
Confidence 211110000000 00112345555555554 789999999999886311 11111111 135889999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
.+.++.+++.+.++.|+|+||++.... ..+...+.+.+.+|.|+++.||+++
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~~~------~~~~~~~~l~~~~~~~vl~~Ip~~~ 207 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPPGK------RHAEYMTTLTRMIPAPLLGEIPWLA 207 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSCCT------THHHHHHHHHHHSSSCEEEEECCCT
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCchh------hHHHHHHHHHHHcCCCEEEECCCCc
Confidence 999999988899999999999876431 1123567788889999999999998
No 28
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.3e-22 Score=192.80 Aligned_cols=207 Identities=16% Similarity=0.132 Sum_probs=129.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc--ccCCCCCce----eee----
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRTI----IPT---- 240 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~--~~~~~~~~i----~~~---- 240 (386)
+..++|+|+|+|||+||||+|+|||..||++|+||++||+|++ ++++.+|+...... ......... .+.
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~ 94 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQ 94 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHH
Confidence 3457899999999999999999999999999999999999998 78888777642100 000000000 000
Q ss_pred -ccCC-----ce-EEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCC-CCC------hHH----------
Q 016622 241 -EYLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTG------DIQ---------- 296 (386)
Q Consensus 241 -~~~~-----l~-vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp-~~~------~~~---------- 296 (386)
...+ ++ +++... ..-...+.++.....++++.+.+.|++|||||||||| |.. ...
T Consensus 95 ~~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~ 173 (329)
T 2woo_A 95 EMTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGG 173 (329)
T ss_dssp HHHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11 111000 0001123444444566677776666799999999999 321 000
Q ss_pred ---------Hhhh----------------------------hhc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeE
Q 016622 297 ---------LTLC----------------------------QVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCI 337 (386)
Q Consensus 297 ---------~~~~----------------------------~~~--~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~ 337 (386)
..+. .+. ..+.+++|++|+..++.++.+.++.+++.|+++.
T Consensus 174 ~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~ 253 (329)
T 2woo_A 174 LSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTH 253 (329)
T ss_dssp SCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCC
Confidence 0000 000 1247999999999999999999999999999999
Q ss_pred EEEEcCCcCCCC-Ccee----cccCCChHHHHHHHhCCCeEEecCCC
Q 016622 338 AVVENMCHFDAD-GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (386)
Q Consensus 338 gvVlN~~~~~~~-~~~~----~~~~~~~~~~i~~~~g~pvl~~IP~d 379 (386)
|+|+||+.+... ...+ +.......+++.+.++-..++.||+.
T Consensus 254 gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 254 NIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred EEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 999999884211 1000 01123456778888854344778864
No 29
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.86 E-value=1.1e-21 Score=187.89 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=125.4
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEe
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (386)
.+.+++|.|+|+|||+||||+|+|||..||++|+||++||+|++. +++.+|+......... ....++++.+.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~~-------v~~~~~L~~~~ 83 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEARL-------VEGFDNLYAME 83 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCEE-------CTTCSSEEEEE
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCcee-------ecCCCCceeee
Confidence 344567889999999999999999999999999999999999754 6766666432100000 00001111111
Q ss_pred cC------------------------CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-hhh----
Q 016622 250 FG------------------------FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLC---- 300 (386)
Q Consensus 250 ~~------------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~---- 300 (386)
.. ........+.+......+.++.+.+.+.+||||||||||......+ .+.
T Consensus 84 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~ 163 (334)
T 3iqw_A 84 IDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLE 163 (334)
T ss_dssp CCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC-
T ss_pred cCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 00 0001001123333334455555555558999999999993211000 000
Q ss_pred ----------------------------------------------------hhc--CCCeEEEEeCCCcchHHHHHHHH
Q 016622 301 ----------------------------------------------------QVV--PLTAAVIVTTPQKLAFIDVAKGV 326 (386)
Q Consensus 301 ----------------------------------------------------~~~--~~d~vviV~~~~~~s~~~~~~~~ 326 (386)
.+. ..+.+++|++|+..++.++.+.+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~ 243 (334)
T 3iqw_A 164 KALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243 (334)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHH
Confidence 011 13579999999999999999999
Q ss_pred HHHHcCCCCeEEEEEcCCcCCC-CCc-----eecccCCChHHHHHHHhCC-CeEEecCCC
Q 016622 327 RMFSKLKVPCIAVVENMCHFDA-DGK-----RYYPFGRGSGSQVVQQFGI-PHLFDLPIR 379 (386)
Q Consensus 327 ~~l~~~~~~i~gvVlN~~~~~~-~~~-----~~~~~~~~~~~~i~~~~g~-pvl~~IP~d 379 (386)
+.|++.|+++.|+|+|++.+.. ... ..+..+...++++.+.++- .-+..||+.
T Consensus 244 ~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~ 303 (334)
T 3iqw_A 244 QELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303 (334)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCC
Confidence 9999999999999999987432 111 1111234567888888864 334456654
No 30
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.83 E-value=1.7e-21 Score=187.54 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=115.1
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCccCCCccc-----------ccccC-CCCC
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMN-PEKR 235 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La--~~G~rVllID~D~~~~sl~~~lg~~~~-----------~~~~~-~~~~ 235 (386)
....+.|+|+|+|||+||||+|+|||..+| +.|+||++||+|+ +++++.+||.... +.... ....
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~-~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~ 92 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP-AHNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEA 92 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCHHHHHHTSCCCSSCEEETTEEEEEEEECCC--
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCChHHHhccccCCCceeccCCCCceEEeeCHHH
Confidence 344557778889999999999999999999 8999999999996 5577777774311 00000 0000
Q ss_pred ce---eee-------ccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCC------------CCcEEEEcCCCCCC
Q 016622 236 TI---IPT-------EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTG 293 (386)
Q Consensus 236 ~i---~~~-------~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~yD~VIIDtpp~~~ 293 (386)
.+ ... ...++..+. ......+.+......+.++++.+.+. +||+|||||||...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~ 168 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMM----SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGH 168 (348)
T ss_dssp -------------------------------------------------------------------CCEEEEECSSHHH
T ss_pred HHHHHHHHHHhhcccccccHhHHh----HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchH
Confidence 00 000 000011000 00001112222223455555555433 89999999999321
Q ss_pred hHHHh-h------------------------------------------------hhhc--CCCeEEEEeCCCcchHHHH
Q 016622 294 DIQLT-L------------------------------------------------CQVV--PLTAAVIVTTPQKLAFIDV 322 (386)
Q Consensus 294 ~~~~~-~------------------------------------------------~~~~--~~d~vviV~~~~~~s~~~~ 322 (386)
...+. + ..+. ..+.+++|++|+..++.++
T Consensus 169 tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea 248 (348)
T 3io3_A 169 TLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYET 248 (348)
T ss_dssp HHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHH
Confidence 10000 0 0000 1357999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCcCCC-C--Cc----eecccCCChHHHHHHHhCCCeEEecCCCh
Q 016622 323 AKGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (386)
Q Consensus 323 ~~~~~~l~~~~~~i~gvVlN~~~~~~-~--~~----~~~~~~~~~~~~i~~~~g~pvl~~IP~d~ 380 (386)
.++++.+++.|+++.|+|+||+.+.. . .. ..+..+...++++.+.++-..+..||+.+
T Consensus 249 ~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~ 313 (348)
T 3io3_A 249 ERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLG 313 (348)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred HHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCC
Confidence 99999999999999999999988643 1 11 01112345677888888654556677653
No 31
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.77 E-value=3.2e-20 Score=183.65 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=150.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|+++.+.|++++...+..|| +...|++.++....+.++ .-.+ .+ .+.+.+.+++.+..+.+.....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~~l~~~l~~~~~~ 92 (433)
T 2xxa_A 20 GRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEV--NKSL-TP----GQEFVKIVRNELVAAMGEENQT 92 (433)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCC--CSSS-CT----TTTTHHHHHHHHHHHHCSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccc--cccC-Ch----HHHHHHHHHHHHHHHhcccccc
Confidence 457999999999999999888887 546677766443211111 0011 11 3344455555555443321110
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCccCCCccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~~~sl~~~lg~~~~~~ 228 (386)
+ . .-.+.+++|+|+ ++||+||||++.+||.+|+++ |+||+++|+|++++.....+.
T Consensus 93 ~-------~---------~~~~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------ 149 (433)
T 2xxa_A 93 L-------N---------LAAQPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------ 149 (433)
T ss_dssp C-------C---------CCSSSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------
T ss_pred c-------c---------ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------
Confidence 0 0 011345799998 799999999999999999998 999999999999876422110
Q ss_pred ccCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHHh----hhhh
Q 016622 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQV 302 (386)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~~~----~~~~ 302 (386)
......|+++++.+.... ....+.+.++.+.+..||||||||||..+. .... +...
T Consensus 150 ---------~~~~~~~l~v~~~~~~~d---------p~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~ 211 (433)
T 2xxa_A 150 ---------TLAEQVGVDFFPSDVGQK---------PVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS 211 (433)
T ss_dssp ---------HHHHHHTCEECCCCSSSC---------HHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH
T ss_pred ---------hhcccCCeeEEeCCCCCC---------HHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh
Confidence 011234788887654211 122334445444436899999999986642 1111 1123
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
...+.+++|+.+... .++....+.+.. ++++.|+|+|+++....+ +....+.+.+|.|+.
T Consensus 212 ~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 212 INPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIK 271 (433)
T ss_dssp SCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEE
T ss_pred hcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeE
Confidence 356888998887643 344444455543 467789999999875422 345678888887754
No 32
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.76 E-value=1.7e-19 Score=185.97 Aligned_cols=205 Identities=19% Similarity=0.176 Sum_probs=123.3
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc-cc--ccCCC------CCceeeec
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL--EMNPE------KRTIIPTE 241 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~-~~--~~~~~------~~~i~~~~ 241 (386)
.+.++|.|+++|||+||||+|+|||..++++|+||+++|+|++ +++...|+.... .. ..... ...+....
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc-ccHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999999998 567777765311 10 00000 00000100
Q ss_pred cCCceEEecCCCCCcccccCCch--HHHHHHHHHHhcCCCCCcEEEEcCCCCCC--------------------hHH--H
Q 016622 242 YLGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTG--------------------DIQ--L 297 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--------------------~~~--~ 297 (386)
..++.. .+. ......+..+. ....++++.+.+.+.+||||||||||+.. +.. .
T Consensus 403 ~~~l~~--~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELDE--AGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCCH--HHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCCh--hhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 011110 000 00001122222 12355666655545679999999999732 100 0
Q ss_pred h-hhhhc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceec-----ccCCChHHHHHHHhC
Q 016622 298 T-LCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYY-----PFGRGSGSQVVQQFG 369 (386)
Q Consensus 298 ~-~~~~~--~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~-----~~~~~~~~~i~~~~g 369 (386)
. ...+. .+|.+++|++|+..++.++.++++.+++.|+++.|+|+|++.........+ ......++++.+.++
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 559 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA 559 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 00111 358899999999999999999999999999999999999988753211110 011234667778888
Q ss_pred CCeEEecCCCh
Q 016622 370 IPHLFDLPIRP 380 (386)
Q Consensus 370 ~pvl~~IP~d~ 380 (386)
.++ +.||+.+
T Consensus 560 ~~v-~~iP~~~ 569 (589)
T 1ihu_A 560 SRV-ALVPVLA 569 (589)
T ss_dssp SSE-EEEECCS
T ss_pred CcE-EEccCCC
Confidence 777 8888764
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.74 E-value=5.7e-19 Score=182.08 Aligned_cols=166 Identities=20% Similarity=0.175 Sum_probs=107.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 253 (386)
+.|.|+|+|||+||||+|+|||..+|++|+||++||+|+ +++++..|+.+..... ......+++........
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~-------~~v~~~~~l~~~~~d~~ 79 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTI-------QAIASVPGLSALEIDPQ 79 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSC-------EECTTSTTEEEEECCHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCC-------ceeccchhhhhccCCHH
Confidence 345578899999999999999999999999999999999 4898888886532100 00001122322211100
Q ss_pred ----------------CCc-------ccccCCc-----hHHHHHHHHHH--hcCCCCCcEEEEcCCCCCChHHHh-----
Q 016622 254 ----------------GQG-------RAIMRGP-----MVSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT----- 298 (386)
Q Consensus 254 ----------------~~~-------~~~~~~~-----~~~~~l~~ll~--~~~~~~yD~VIIDtpp~~~~~~~~----- 298 (386)
... ...+.++ .....+.++++ .+. ++||+|||||||......+.
T Consensus 80 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~lP~~ 158 (589)
T 1ihu_A 80 AAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQLPGA 158 (589)
T ss_dssp HHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHhHHH
Confidence 000 0001111 11234555555 322 67999999999853211000
Q ss_pred -------------------------------hhhhc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 016622 299 -------------------------------LCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (386)
Q Consensus 299 -------------------------------~~~~~--~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~ 345 (386)
...+. ..+.+++|++++..++.++.+.++.+++.|+++.|+|+|++.
T Consensus 159 ~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 159 WSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp GTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 00011 123699999999999999999999999999999999999987
Q ss_pred CCC
Q 016622 346 FDA 348 (386)
Q Consensus 346 ~~~ 348 (386)
...
T Consensus 239 ~~~ 241 (589)
T 1ihu_A 239 PKT 241 (589)
T ss_dssp CGG
T ss_pred Ccc
Confidence 653
No 34
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.73 E-value=7.2e-18 Score=163.37 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=104.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEe----
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS---- 249 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~---- 249 (386)
+.|.|+++|||+||||+|++||..+|++|+||++||+ + +++++.+||...... ...+ .++++.+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~-~~~l~~~~~~~~~~~-----~~~v----~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-A-EPVLPLLLEQTLTPD-----PQQI----APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-S-CSHHHHHHTSCCCSS-----CEEE----ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-C-CCChHHhhCCCCCCC-----cccc----cccccccccCHH
Confidence 3567778999999999999999999999999999999 5 667877777542100 0000 11222221
Q ss_pred -------------------cC-CC---CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH----------
Q 016622 250 -------------------FG-FS---GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---------- 296 (386)
Q Consensus 250 -------------------~~-~~---~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~---------- 296 (386)
.. .. ......+.+......+.++.+...+.+||||||||||......
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 00 00 0111112333333345555544445789999999999421000
Q ss_pred -----------------H------------------------------------hhhhhcC--CCeEEEEeCCCcchHHH
Q 016622 297 -----------------L------------------------------------TLCQVVP--LTAAVIVTTPQKLAFID 321 (386)
Q Consensus 297 -----------------~------------------------------------~~~~~~~--~d~vviV~~~~~~s~~~ 321 (386)
. ....+.. ...+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 0 0000111 24799999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcC
Q 016622 322 VAKGVRMFSKLKVPCIAVVENM 343 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~ 343 (386)
+.+.++.+++.|+++.|+|+||
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHcCCCccEEEEcC
Confidence 9999999999999999999999
No 35
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.70 E-value=6e-17 Score=128.38 Aligned_cols=86 Identities=36% Similarity=0.596 Sum_probs=81.3
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEEE
Q 016622 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 153 (386)
Q Consensus 74 ~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l~ 153 (386)
|.++++|+++|++|+||+++.|||++|+|++|.++++ +.+.|.|++|+++||..+.+.+++++++.+++|+++++|+++
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 4689999999999999999999999999999999854 689999999999999999999999999999999999999999
Q ss_pred eCCCCch
Q 016622 154 AQPARPI 160 (386)
Q Consensus 154 ~~p~~~~ 160 (386)
++|+|..
T Consensus 84 ~~p~W~~ 90 (103)
T 1uwd_A 84 FDPPWTP 90 (103)
T ss_dssp CSSCCCG
T ss_pred cCCCCCh
Confidence 9999954
No 36
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.69 E-value=2.9e-17 Score=131.16 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=81.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHh-hcCCCcceeEEE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVT 151 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l-~~l~gv~~v~v~ 151 (386)
.+.++++|+++|++|+||+++.|||++|+|++|.++++ +.+.|.|++|+++||..+.+.+++++++ .+++|+++++|+
T Consensus 6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~-~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADEN-NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTT-CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCC-CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35689999999999999999999999999999999854 6899999999999999999999999999 999999999999
Q ss_pred EEeCCCCch
Q 016622 152 MSAQPARPI 160 (386)
Q Consensus 152 l~~~p~~~~ 160 (386)
++++|+|..
T Consensus 85 l~~~p~W~~ 93 (108)
T 3lno_A 85 VVWNPPWSK 93 (108)
T ss_dssp ECCSSCCCG
T ss_pred EEecCCCCh
Confidence 999999954
No 37
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.69 E-value=1.5e-18 Score=163.65 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=152.2
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++++++.+.|++++...+..|| +...++++++....+.++ .++....+.+.+.+.+.+....+....
T Consensus 18 ~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~- 89 (297)
T 1j8m_F 18 SSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKP-------PTYIERREWFIKIVYDELSNLFGGDKE- 89 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-------CTTCCHHHHHHHHHHHHHHHHTTCSCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccc-------cccCChHHHHHHHHHHHHHHHhccccc-
Confidence 456888999999999998888887 446667665432110111 112222566667777777655442210
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
+.. .+...+++|+++ +++|+||||++.+||..++.+|++|+++|+|++++.....+..
T Consensus 90 ------~~i---------~~~~~~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~------ 147 (297)
T 1j8m_F 90 ------PKV---------IPDKIPYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ------ 147 (297)
T ss_dssp ------CCC---------SCSSSSEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH------
T ss_pred ------ccc---------ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH------
Confidence 000 011125688887 7999999999999999999999999999999998754321110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hH-HHh-----hhh
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LCQ 301 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~-~~~-----~~~ 301 (386)
.....|+.+++.... ......+.+.++.+.++.||||||||||... .. .+. +..
T Consensus 148 ---------~~~~~~v~v~~~~~~---------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~ 209 (297)
T 1j8m_F 148 ---------LGQQIGVPVYGEPGE---------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYE 209 (297)
T ss_dssp ---------HHHHHTCCEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHH
T ss_pred ---------HhccCCeEEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHH
Confidence 011236777764321 1122334455555444789999999998776 21 111 123
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 302 ~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...+|.+++|+.+... .++.+..+.+.+ ..++.|+|+|+++....+ +....+.+.+++|+..
T Consensus 210 ~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 4467999999887642 344444455554 477899999998865421 2355678888888764
No 38
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.67 E-value=1.5e-16 Score=125.97 Aligned_cols=84 Identities=26% Similarity=0.562 Sum_probs=80.2
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEEEEe
Q 016622 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (386)
Q Consensus 75 ~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~l~~ 154 (386)
.++++|+++|++|+||+++.|++++|+|++|.+++ +.+.|.|++|+++||..+.+.+++++++.+++|+++++|++++
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 36889999999999999999999999999999988 7899999999999999999999999999999999999999999
Q ss_pred CCCCch
Q 016622 155 QPARPI 160 (386)
Q Consensus 155 ~p~~~~ 160 (386)
+|+|..
T Consensus 84 ~p~W~~ 89 (103)
T 3cq1_A 84 EPPWTL 89 (103)
T ss_dssp SSCCCG
T ss_pred CCCCCh
Confidence 999954
No 39
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.67 E-value=5.4e-18 Score=166.66 Aligned_cols=241 Identities=19% Similarity=0.172 Sum_probs=153.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++++++.+.|++++...+..|| +...|++.+.....+..+ .. +....+.+.+.+.+.+...-+.....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~~L~~~~~~~~~~ 92 (425)
T 2ffh_A 20 GRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV------LE-SLTPAEVILATVYEALKEALGGEARL 92 (425)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTG------GG-CSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc------cc-cCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 457899999999999999888888 556677766542211111 11 11225677777887776554422111
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
++ +. .+++|+|+ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 93 i~-----------------l~-~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 93 PV-----------------LK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp CC-----------------CC-SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred cc-----------------CC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 11 11 34689998 7899999999999999999999999999999988765322110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HHH-----hhhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQL-----TLCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~~-----~~~~~~ 303 (386)
.....|+++++.+.... ....+.+.++.+++..||+|||||||..+. ..+ .+....
T Consensus 148 ---------~~~~~gv~v~~~~~~~~---------p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGES---------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ---------HHHHHTCCEEECCTTCC---------HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ---------hcccCCccEEecCCCCC---------HHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 01223778887654211 112234444443227899999999987642 111 112233
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..|.+++|+.+... .++....+.+.. .+++.|+|+|+++....+ +....+.+.+|+|+.+
T Consensus 210 ~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 210 GPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp CCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred CCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 56889999876532 444444455543 366789999998765421 2455678888998543
No 40
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.65 E-value=4.1e-17 Score=160.65 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=148.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|+++.+.|+++++..+..|| +...|+++++....+.++ ..+-...+.+.+.+++.+..+.+....
T Consensus 21 ~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v-------~~~~~~~~~v~~~l~~eL~~~L~~~~~- 92 (443)
T 3dm5_A 21 SSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKP-------PAGISKKEHIIKIVYEELTKFLGTEAK- 92 (443)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-------CTTCCHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccc-------cccCCcHHHHHHHHHHHHHHHhcCccc-
Confidence 356899999999999999888887 445566654432110101 112223677888888888776543210
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
. ....+.+++|+|+ |.+|+||||++.+||.+|+++|+||+++|+|++++.....+.
T Consensus 93 --------~--------~~~~~~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~------- 148 (443)
T 3dm5_A 93 --------P--------IEIKEKPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR------- 148 (443)
T ss_dssp --------C--------CCCCSSSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH-------
T ss_pred --------c--------cccCCCCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH-------
Confidence 0 0111235688888 459999999999999999999999999999998875321110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HH-----Hhhhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQ-----LTLCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~-----~~~~~~~ 303 (386)
......++.+....... .....+.+.++.+..+.||+|||||++.... .. ..+....
T Consensus 149 --------~~~~~~gvpv~~~~~~~---------dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~ 211 (443)
T 3dm5_A 149 --------QLLDRYHIEVFGNPQEK---------DAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211 (443)
T ss_dssp --------HHHGGGTCEEECCTTCC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHhcCCcEEecCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh
Confidence 01112245554432211 1223334444444336799999999975531 11 1112234
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
..|.+++|+.+... .++....+.+.+ ..++.|+|+|+++....+ +....+...+|+|+.
T Consensus 212 ~pd~vlLVvDA~~g--q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~ 270 (443)
T 3dm5_A 212 HPHEVILVIDGTIG--QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIK 270 (443)
T ss_dssp CCSEEEEEEEGGGG--GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEE
T ss_pred cCceEEEEEeCCCc--hhHHHHHHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEE
Confidence 56889999887653 334444455554 356789999999875421 235566777888875
No 41
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.64 E-value=3.9e-16 Score=141.66 Aligned_cols=195 Identities=11% Similarity=0.036 Sum_probs=121.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc-cc-ccccCCCCCceeeeccCCceEEe
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NR-LLEMNPEKRTIIPTEYLGVKLVS 249 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~-~~-~~~~~~~~~~i~~~~~~~l~vl~ 249 (386)
.++.|.|+|...|+|||+++++|+..|+++|+||..+..=..++... --+.. .+ ........ .+....+...+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~-~~~~~~~D~~~~~~~~~---~~~~~~~~~~~~ 78 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQF-SELCEDVESILNAYKHK---FTAAEINLISFN 78 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSS-SSSBHHHHHHHHHTTTS---SCHHHHCSEEES
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccC-CCCCChHHHHHHhcCCC---CChhhEEEEEEC
Confidence 46899999999999999999999999999999999976211111000 00000 00 00000000 000111333443
Q ss_pred cCCCCCcccccC-CchHHHHHHHHHHh-cCCCCCcEEEEcCCCCCChH------HHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 250 FGFSGQGRAIMR-GPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~l~~ll~~-~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
............ .....+.+.+.++. +. ++||+||||+++|+... ...++... ...+++|+.+...++.+
T Consensus 79 ~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l-~~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 79 QAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL-QIPVLLVSAIKVGCINH 156 (228)
T ss_dssp SSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH-TCCEEEEEECSTTHHHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHc-CCCEEEEEcCCcchHHH
Confidence 222111111111 11223456666665 54 79999999999876421 11121121 24589999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCC
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~ 378 (386)
+...++.+++.+.++.|+|+|+++.+... .....+.+++.+|+|++|.||.
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~~~~~~------~~~~~~~l~~~~g~pvLG~iP~ 207 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCNDSNIKY------IDEQINTIEELSGYKCSAKISR 207 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCTTCSC------HHHHHHHHHHHHSCCCSEEEES
T ss_pred HHHHHHHHHhCCCcEEEEEEECcCCcchh------hHHHHHHHHHhhCCCEEEECCC
Confidence 99999999999999999999998754311 1235677888899999999993
No 42
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.63 E-value=1.6e-15 Score=144.39 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=106.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+++|+|+|. +|+||||++.+||..++..|++|+++|+|++++.....+. .+.. .....++.++|.+
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~---~~~~---------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE---EWIK---------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHH---HHHT---------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---HHHh---------ccccCCceEEeCC
Confidence 3579999965 9999999999999999999999999999997754211000 0000 0013578888644
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhh------hh------cCCCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC------QV------VPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~------~~------~~~d~vviV~~~~~~s~ 319 (386)
...... .....+.+..... +.||||||||||........+. .. ..+|.+++|+.+.. ..
T Consensus 171 ~~~~~p-------~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 171 KLNADP-------ASVVFDAIKKAKE-QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp STTCCH-------HHHHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCCCH-------HHHHHHHHHHHHh-cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 322111 1112233332222 7899999999997753211110 01 12688889887763 33
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..+.+. +.+.+ ..++.|+|+|+++....+ +....+...+|+|+..
T Consensus 242 ~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~ 286 (320)
T 1zu4_A 242 NGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKM 286 (320)
T ss_dssp HHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEE
Confidence 334333 33332 367899999998865432 3567888899999754
No 43
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.60 E-value=1.8e-16 Score=159.02 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=145.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|+++.++|++++...+..|| +...|++.++....+..+ ..+....+.+.+.+++.|..+.+....
T Consensus 21 ~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~v~~eL~~ll~~~~~- 92 (504)
T 2j37_W 21 TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEM-------ASGLNKRKMIQHAVFKELVKLVDPGVK- 92 (504)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCC-------CSSSCHHHHHHHHHHHHHHHHHCCCCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcc-------cccCChHHHHHHHHHHHHHHHhccccc-
Confidence 457899999999999888888777 445666665422210111 111222567888888888776543211
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
.+. ......++|+|+ +.+|+||||++.+||.+++++|++|++||+|++++.....+...
T Consensus 93 -------~~~--------~~~~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~----- 151 (504)
T 2j37_W 93 -------AWT--------PTKGKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN----- 151 (504)
T ss_dssp -------CCC--------CCSS--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHH-----
T ss_pred -------hhc--------cccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHH-----
Confidence 010 001235689998 66999999999999999999999999999999887542211100
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHH----hhhhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL----TLCQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~~----~~~~~~ 303 (386)
....++.+++.+...+ ....+.+.++.+.+..||+||||||+.... ... ......
T Consensus 152 ----------~~~~~i~v~~~~~~~d---------p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i 212 (504)
T 2j37_W 152 ----------ATKARIPFYGSYTEMD---------PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI 212 (504)
T ss_dssp ----------HHHHTCCEEECCCCSC---------HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred ----------hhccCceEEccCCCCC---------HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhh
Confidence 0112455554322111 112223333333347899999999987642 111 111123
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
.+|.+++|+.+.... +.....+.+.+. .++.++|+|+++..... +..-.+.+.+|+|+.
T Consensus 213 ~pd~vllVvDa~~g~--~~~~~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 213 QPDNIVYVMDASIGQ--ACEAQAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp CCSEEEEEEETTCCT--THHHHHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred cCceEEEEEeccccc--cHHHHHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 578899998876531 123334444432 56678999999865421 234457788898874
No 44
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.58 E-value=1.3e-16 Score=157.04 Aligned_cols=242 Identities=16% Similarity=0.159 Sum_probs=150.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++|+++.++|++|++..+..|| +...|+++++....+..+ ..+....+.+.+.+.+.+..+.+....
T Consensus 17 ~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~v~~~v~~eL~~~L~~~~~- 88 (433)
T 3kl4_A 17 STPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP-------PSVLERKEWFISIVYDELSKLFGGDKE- 88 (433)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC-------CTTCCHHHHHHHHHHHHHHHHHCSSSC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccc-------cccCChHHHHHHHHHHHHHHhcCcccc-
Confidence 457999999999999999998888 556677666532210111 122233677888888888765442210
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
.. ......+++|+++ |.+|+||||++.+||.+++.+|++|+++|+|.+++.....+.
T Consensus 89 -------~~--------~~~~~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~------- 145 (433)
T 3kl4_A 89 -------PN--------VNPTKLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL------- 145 (433)
T ss_dssp -------CC--------CSCCSSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH-------
T ss_pred -------cc--------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH-------
Confidence 00 1112235688887 789999999999999999999999999999987754211100
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC---hH-----HHhhhh
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DI-----QLTLCQ 301 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~---~~-----~~~~~~ 301 (386)
......++.+...... ..........++.+.+..||+||||||+... +. ...+..
T Consensus 146 --------~~~~~~gv~~~~~~~~---------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 146 --------QLGNQIGVQVYGEPNN---------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp --------HHHHTTTCCEECCTTC---------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred --------HHHHhcCCceeecccc---------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 0001123333332211 1122344555666656799999999997543 11 111222
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeE
Q 016622 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 302 ~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl 373 (386)
....+.+++|+.+... .++....+.+.+ ..++.|+|+|+++....+ +..-.+...+|+|+.
T Consensus 209 ~~~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~ 269 (433)
T 3kl4_A 209 VLKPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIK 269 (433)
T ss_dssp HHCCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEE
T ss_pred hhCCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEE
Confidence 3345888888777653 334444455553 245689999999875421 345667777898874
No 45
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.58 E-value=9.8e-15 Score=133.97 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=118.6
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
+.++.|.|++...|+|||++++.|+.+|+++|+||..+..=..+.. .. +.+....... .. +... .+...+..
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~-~~--~~D~~~~~~~-~g--~~~~--~~~~~~~~ 95 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTA-RG--DDDLAEVGRL-AG--VTQL--AGLARYPQ 95 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGG-GT--CCHHHHHHHH-HC--CCEE--EEEEECSS
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCC-CC--CHHHHHHHHH-cC--CCCC--CCCeeECC
Confidence 4568999999999999999999999999999999999973111100 00 0000000000 00 0000 11222211
Q ss_pred CCCCCcccccCC--chHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-------HHHhhhhhcCCCeEEEEeCCCcchHHH
Q 016622 251 GFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFID 321 (386)
Q Consensus 251 ~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-------~~~~~~~~~~~d~vviV~~~~~~s~~~ 321 (386)
...........+ ....+.+.+.++.+. ++||+||||+++|+.+ ....++... ...+++|+.++..++..
T Consensus 96 p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l-~~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 96 PMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDV-AAAALVVVTADLGTLNH 173 (251)
T ss_dssp SSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHT-TCEEEEEECSSTTHHHH
T ss_pred CCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHc-CCCEEEEEcCCCccHHH
Confidence 111001111111 122345666666665 7999999999988742 111122122 36799999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChh
Q 016622 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (386)
Q Consensus 322 ~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~ 381 (386)
+...++.+++.+.++.|+|+|++..+..- .. +...+.++ ++ +|++|.||+++.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~-~~----~~~~~~le-~~-vpvLG~iP~~~~ 226 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGL-VA----ASNRSALA-RI-AMVRAALPAGAA 226 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCH-HH----HHHHHHHH-HH-SCEEEEEETTGG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhh-hh----hhHHHHHH-Hh-CCEEEEeeCCCC
Confidence 99999999999999999999998643210 00 12234444 44 999999999863
No 46
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.57 E-value=8.7e-15 Score=137.88 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=139.0
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeE
Q 016622 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (386)
Q Consensus 73 ~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~ 149 (386)
..++++++.+.|++++...+..|+ +...+++++..... |+. ...+....+.+.....+.+...-+-..
T Consensus 20 ~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~-g~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 90 (295)
T 1ls1_A 20 GRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL-GKQ------VLESLTPAEVILATVYEALKEALGGEA-- 90 (295)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTT------TTTCSCHHHHHHHHHHHHHHHHTTSSC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc-ccc------ccccCCcHHHHHHHHHHHHHHHHCCCC--
Confidence 456888888888888765555454 33455555543221 110 000111123444444444432211110
Q ss_pred EEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccc
Q 016622 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (386)
Q Consensus 150 v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~ 229 (386)
.+ -.+. .+++|+++ +++|+||||++.+||..++..|.+|+++|+|++++.....+..
T Consensus 91 -----~~----------i~~~-~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~------ 147 (295)
T 1ls1_A 91 -----RL----------PVLK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (295)
T ss_dssp -----CC----------CCCC-SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred -----ce----------eecC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH------
Confidence 00 0112 45799999 8999999999999999999999999999999987644321110
Q ss_pred cCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhh------hhhc
Q 016622 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV 303 (386)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~------~~~~ 303 (386)
.....|+++++.+..... ....+..++.+...+||+|||||||..+.....+ ....
T Consensus 148 ---------~~~~~~l~~~~~~~~~~p---------~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 148 ---------LGEKVGVPVLEVMDGESP---------ESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp ---------HHHHHTCCEEECCTTCCH---------HHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ---------hcccCCeEEEEcCCCCCH---------HHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 012247788875542111 1122333333322689999999998764211111 1123
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 304 ~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..|.+++|+.+.. . .++.+..+.+.. ..++.|+|+|+++..... +..-.+.+.+|+|+..
T Consensus 210 ~~~~~~lv~~~~~-~-~~~~~~~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 210 GPDEVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp CCSEEEEEEEGGG-T-HHHHHHHHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred CCCEEEEEEeCCC-c-HHHHHHHHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 4688888887664 2 333344444443 366789999998865421 3456778888999864
No 47
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.50 E-value=1.1e-13 Score=126.40 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=118.5
Q ss_pred cccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccccc----CCCCCceeeec
Q 016622 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTIIPTE 241 (386)
Q Consensus 166 ~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~----~~~~~~i~~~~ 241 (386)
.+++..|++.|.|++..+|+|||++++.|+.+|+++|++|..+..=..+.. ..-+...+.... ......+....
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~--~~~~~~~D~~~~~~~~~~~~~g~~~~~ 91 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVN--DAINHSSDAHLFLQDNRLLDRSLTLKD 91 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCC--TTTCCCSHHHHHHHHHHTTCTTCCHHH
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCc--ccCCCCchHHHHHHHHHHHhCCCChHH
Confidence 457788999999999999999999999999999999999999963111111 000011110000 00000000000
Q ss_pred cCCceEEecCCCCCcccccCC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHhhhhhcCCCeEEEEe
Q 016622 242 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVT 312 (386)
Q Consensus 242 ~~~l~vl~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~vviV~ 312 (386)
-+...+.............+ ....+.+.+.++.+. ..||+||||+++|+.+. ...++... ...+++|+
T Consensus 92 -~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l-~~pVILV~ 168 (242)
T 3qxc_A 92 -ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKL-KAKMLLIS 168 (242)
T ss_dssp -HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-TCEEEEEE
T ss_pred -eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHc-CCCEEEEE
Confidence 01122211111000000011 122344556666555 79999999999887431 11122222 24689999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhh
Q 016622 313 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTVSY 384 (386)
Q Consensus 313 ~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~IP~d~~i~~ 384 (386)
.++..++..+...++.+++.+++ .|+|+|+++.+.. .+...+..+++.-.....+++..+|.-+.+.+
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~~---~~~~~~p~le~~~~~~~~~~~~~~~~~~~l~~ 236 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNTA---FHSISLPYIELFNTRSNNPIVIFQQSLKVLMS 236 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCCH---HHHHTHHHHHHHHHHCSSCCEEGGGCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCccc---hhhhhHHHHHHhcCcccCCceeccccHHHHHH
Confidence 99999999999999999999999 9999999876531 11111112233333334677777766665543
No 48
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.50 E-value=3e-13 Score=133.63 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=138.5
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcceeEEE
Q 016622 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (386)
Q Consensus 75 ~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v~v~ 151 (386)
++++++.+.++++....+..|| +...+++.++...- +. . +..+....+.+.+.+++.+..+.+....
T Consensus 21 ~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~-~~-~-----~~~~~~~~~~~~~~~~~~l~~ll~~~~~--- 90 (432)
T 2v3c_C 21 VDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL-EE-K-----TPKGLSKKEHIIKIVYEELVKLLGEEAK--- 90 (432)
T ss_dssp CCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHS-SS-C-----SSCSSCHHHHHHHHHHHHHHHHHCCSCC---
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cc-c-----ccccCChHHHHHHHHHHHHHHHhCCCCc---
Confidence 3454555555555555555555 33556665543221 10 0 1112222555777777777766443211
Q ss_pred EEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccC
Q 016622 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (386)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~ 231 (386)
.|.. -++.+++|+|+| .+|+||||++.+||..++++|+||+++|+|++++.....+..
T Consensus 91 -----~~~~--------~~~~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~-------- 148 (432)
T 2v3c_C 91 -----KLEL--------NPKKQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ-------- 148 (432)
T ss_dssp -----CCCC--------CSSSCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH--------
T ss_pred -----Cccc--------cCCCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH--------
Confidence 1100 012345899985 699999999999999999999999999999998765322110
Q ss_pred CCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-H-----hhhhhcCC
Q 016622 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-----TLCQVVPL 305 (386)
Q Consensus 232 ~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~-----~~~~~~~~ 305 (386)
.....|+.+++.+....+. .. .+.+.+..+ ..||+||||||+...... + .+..+..+
T Consensus 149 -------~~~~~gv~v~~~~~~~~dp----~~----i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~ 211 (432)
T 2v3c_C 149 -------LAEKIHVPIYGDETRTKSP----VD----IVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNP 211 (432)
T ss_dssp -------HHHHSSCCEECCSSSCCSS----ST----THHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCC
T ss_pred -------hhhccCcceEecCCCCCCH----HH----HHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcC
Confidence 0122467777654111110 01 123344443 689999999998765211 1 11122357
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCC-CeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 306 d~vviV~~~~~~s~~~~~~~~~~l~~~~~-~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
|.+++|+.+.... ++....+.+.. +. ++.|+|+|+++....+ +....+.+.+|.|+..
T Consensus 212 d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 212 DEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp SEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred cceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 8888888765432 33344444543 35 7799999999865321 2244578888988754
No 49
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.42 E-value=1.3e-12 Score=123.30 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=102.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+++|+|+|. +|+||||++.+||..++..|++|+++|+|.+++..... +. ......++.+++..
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eq------L~---------~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ------LK---------IWGERVGATVISHS 166 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHH------HH---------HHHHHHTCEEECCS
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHH------HH---------HHHHHcCCcEEecC
Confidence 4579999965 99999999999999999999999999999877532100 00 00011256666533
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-H-----hhhhh------cCCCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-----TLCQV------VPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~-----~~~~~------~~~d~vviV~~~~~~s~ 319 (386)
...+.. ......+... .. .+||+||+|+|+...... + .+... ...+.+++|+... ...
T Consensus 167 s~~~~~-----~v~~~al~~a---~~-~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~ 236 (306)
T 1vma_A 167 EGADPA-----AVAFDAVAHA---LA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQ 236 (306)
T ss_dssp TTCCHH-----HHHHHHHHHH---HH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHH
T ss_pred CccCHH-----HHHHHHHHHH---Hh-cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCH
Confidence 211110 0011122222 22 789999999998643211 1 00111 1257888888765 333
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
..+... +.+.+ ..++.|+|+|+++....+ +..-.+...+|+|+..
T Consensus 237 ~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~ 281 (306)
T 1vma_A 237 NGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKF 281 (306)
T ss_dssp HHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 333333 33433 266789999999865432 4578889999999875
No 50
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.38 E-value=3.8e-13 Score=123.87 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=41.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~ 218 (386)
+...+.+.++|||+||||++.+||..++ .|+||++||+|++...+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 4568888999999999999999999999 999999999999887653
No 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.23 E-value=3.9e-11 Score=112.83 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=96.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
+++|+|++ .+|+||||++.+||..++. +|++|+++|+|++++.....+.. . ....++.+...
T Consensus 105 g~vi~lvG-~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~------~---------~~~~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLFG-STGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT------Y---------AELLQAPLEVC- 167 (296)
T ss_dssp SSEEEEEE-STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH------H---------HTTTTCCCCBC-
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH------H---------HHhcCCCeEec-
Confidence 46999985 5899999999999999995 89999999999976543211100 0 00012211110
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH---hhhhhc---CCCeEEEEeCCCcchHHHHHHH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV---PLTAAVIVTTPQKLAFIDVAKG 325 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~---~~~~~~---~~d~vviV~~~~~~s~~~~~~~ 325 (386)
..+ ..+...+..+ .+||+||+||++....... .+..+. ..+.+++|+.... ...++.+.
T Consensus 168 ---------~~~---~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~ 232 (296)
T 2px0_A 168 ---------YTK---EEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHI 232 (296)
T ss_dssp ---------SSH---HHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHH
T ss_pred ---------CCH---HHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHH
Confidence 001 1233444433 6899999999875542111 111122 2466677764443 34555555
Q ss_pred HHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 326 ~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.+.+.. +++.|+|+|+++..... +....+...+|+|+..
T Consensus 233 ~~~~~~--l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 233 VKRFSS--VPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp TTTTSS--SCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHhc--CCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 555543 45689999998865421 3566777888988754
No 52
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.16 E-value=6.1e-12 Score=101.65 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=64.7
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEe-----cCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhc-CCCccee
Q 016622 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN-----EALGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKV 148 (386)
Q Consensus 75 ~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~-----~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~-l~gv~~v 148 (386)
..+++|+++|++|+|||++.++++||+|+++.+. ++++.+.|.|++|.++||++..|...++.+|.. +++.-++
T Consensus 8 ~~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV 87 (130)
T 3ux2_A 8 EKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKL 87 (130)
T ss_dssp HHHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEE
Confidence 3588999999999999999999999999997653 222569999999999999999999999999965 6664444
Q ss_pred EEEE
Q 016622 149 NVTM 152 (386)
Q Consensus 149 ~v~l 152 (386)
++.+
T Consensus 88 ~v~I 91 (130)
T 3ux2_A 88 EIYI 91 (130)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 4333
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.03 E-value=5.1e-10 Score=107.97 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=82.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc-cCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
...+|+|+ |++|+||||++.+|+..++..|++|+++|+|++.+.... +++.... .......+++++.+.
T Consensus 78 ~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~---------~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 78 NAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTR---------MARLAVHPNAYIRPS 147 (355)
T ss_dssp CSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEECC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhh---------HHhhccCCCeeEEEC
Confidence 34578776 789999999999999999999999999999997764221 1110000 000112346666654
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~ 330 (386)
+..... ..........+..+.+..||++|||||+ .......+ ...+|.+++|+.++..... ..+...+
T Consensus 148 ~~~~~~------~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~- 215 (355)
T 3p32_A 148 PTSGTL------GGVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV- 215 (355)
T ss_dssp C--CCH------HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS-
T ss_pred CCCccc------cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH-
Confidence 432111 0111222222223333789999999985 55433333 3457999999887653211 1100111
Q ss_pred cCCCCeEEEEEcCCcCC
Q 016622 331 KLKVPCIAVVENMCHFD 347 (386)
Q Consensus 331 ~~~~~i~gvVlN~~~~~ 347 (386)
.+.+ ..+|+||++..
T Consensus 216 -~~~p-~ivVlNK~Dl~ 230 (355)
T 3p32_A 216 -LELA-DIVVVNKADGE 230 (355)
T ss_dssp -GGGC-SEEEEECCCGG
T ss_pred -hhcC-CEEEEECCCCc
Confidence 1223 45888999854
No 54
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.99 E-value=2e-10 Score=109.42 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=144.4
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCccee
Q 016622 72 STGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (386)
Q Consensus 72 ~~~~~~~~i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~v 148 (386)
....+++++.+.|+++++..+..|| +...++++++.+..+.++. -. ....+.+.+.+++.+..+.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~l~~~l~~~l~~~~- 115 (328)
T 3e70_C 44 TVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVR--IG-----TDKGKIIEEAVKEAVSEILETSR- 115 (328)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEE--CC--------CHHHHHHHHHHHHHHSCCSS-
T ss_pred hccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccC--Cc-----cCHHHHHHHHHHHHHHHHhCCcc-
Confidence 3567999999999999999888888 4566777766443212221 11 11256777777877776544211
Q ss_pred EEEEEeCCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccccc
Q 016622 149 NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (386)
Q Consensus 149 ~v~l~~~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~ 228 (386)
.+++. .. ......+.+|+++ |..|+||||+...||..+...|.+|++++.|.++......+
T Consensus 116 ~~~~~------~~-----~~~~~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql------- 176 (328)
T 3e70_C 116 RIDLI------EE-----IRKAEKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQL------- 176 (328)
T ss_dssp CCCHH------HH-----HHSSCSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHH-------
T ss_pred ccchh------hh-----cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHH-------
Confidence 00000 00 0011245689988 66999999999999999999999999999998764321100
Q ss_pred ccCCCCCceeeeccCCceEEecCCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--H----HHhhhhh
Q 016622 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--I----QLTLCQV 302 (386)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~----~~~~~~~ 302 (386)
......-++.+++........ ....+.+.... ...||++++|+++.... . ...+...
T Consensus 177 --------~~~~~~~gv~~v~q~~~~~p~-----~~v~e~l~~~~----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra 239 (328)
T 3e70_C 177 --------EEHAKRIGVKVIKHSYGADPA-----AVAYDAIQHAK----ARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239 (328)
T ss_dssp --------HHHHHHTTCEEECCCTTCCHH-----HHHHHHHHHHH----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHH
T ss_pred --------HHHHHHcCceEEeccccCCHH-----HHHHHHHHHHH----hccchhhHHhhccchhHHHHHHHHHHHHHHH
Confidence 000011244444322211110 11112222222 15799999999976431 1 1112223
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 303 ~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...|..++|..+... .++...++.+.+ ...+.++|+|+.+....+ +..-.+...+|.|+..
T Consensus 240 l~~de~llvLDa~t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~ 300 (328)
T 3e70_C 240 TKPNLVIFVGDALAG--NAIVEQARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILF 300 (328)
T ss_dssp HCCSEEEEEEEGGGT--THHHHHHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEE
T ss_pred hcCCCCEEEEecHHH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEE
Confidence 346888888775443 345555555543 234568999998864321 3456778888988764
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.76 E-value=2.5e-08 Score=99.16 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=96.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+.+|+|+ |.+|+||||+...||..+...|.+|++.+.|.++..... .+.. .....++.+++..
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~~---------~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQV---------WGQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHHH---------HHHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHHH---------HHHhcCceEEecc
Confidence 35689998 779999999999999999988899999999876521000 0000 0001134444322
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HHHh-----hhhh------cCCCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLT-----LCQV------VPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~~~-----~~~~------~~~d~vviV~~~~~~s~ 319 (386)
.... ........+.... ...||+|||||++.... ..+. +... ...+.+++|..+...
T Consensus 356 ~~~~-----p~~tV~e~l~~a~----~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-- 424 (503)
T 2yhs_A 356 TGAD-----SASVIFDAIQAAK----ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-- 424 (503)
T ss_dssp TTCC-----HHHHHHHHHHHHH----HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--
T ss_pred cCcC-----HHHHHHHHHHHHH----hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--
Confidence 1110 0011122222222 26899999999976532 1110 1111 123567888776543
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.++...++.|.+ ...+.|+|+|+.+....+ +..-.+...+|+|+.+
T Consensus 425 q~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 425 QNAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRY 470 (503)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 333334444443 234578999998864321 4677888888988865
No 56
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.64 E-value=2.1e-07 Score=99.15 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCCh------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+|++||.+..|+.. ....++.... --+|+|+.....++..+.-.++.++..++++.|+|+|++...
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~------ 273 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLV------ 273 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSC------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchh------
Confidence 799999999876531 1222222222 348889998888999999999999888999999999976521
Q ss_pred cccCCChHHHHHH----HhCCCeEEecCCChh
Q 016622 354 YPFGRGSGSQVVQ----QFGIPHLFDLPIRPT 381 (386)
Q Consensus 354 ~~~~~~~~~~i~~----~~g~pvl~~IP~d~~ 381 (386)
..+.+.+ ..++++++.+|+.+.
T Consensus 274 ------~~~~l~~~l~~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 274 ------NEVPLTSYLRNKVPVLVLPPVPKDPS 299 (831)
T ss_dssp ------THHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred ------HHHHHHHHHHhCCCceeeCCCCCCCH
Confidence 2333343 345667889998754
No 57
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.60 E-value=2.2e-07 Score=88.35 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=111.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
.+.|.++++-.++||||++..|..+|.++|+++..+-....+ .+. . .. ..+ +
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----~~~-------~----~~-gi~-----~------- 203 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----VML-------E----GD-GVA-----L------- 203 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----HHH-------H----SC-SCC-----G-------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----hhh-------h----cC-Ccc-----h-------
Confidence 689999999999999999999999999999999885321110 000 0 00 000 0
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh----HHHhhhhhcCCCeEEEEeCCCcchH---------
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKLAF--------- 319 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~----~~~~~~~~~~~d~vviV~~~~~~s~--------- 319 (386)
+ ..........++++...+. ++||++||...+++.. ..+.+..-...|.+|+|..++...+
T Consensus 204 ---D--av~~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 204 ---D--AVRVDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp ---G--GSBHHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred ---h--HHHHHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 0 0011222345555555554 6899999999887642 2233333445688999999887766
Q ss_pred --HHHHHHHHHHHc-----CCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEEec
Q 016622 320 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDL 376 (386)
Q Consensus 320 --~~~~~~~~~l~~-----~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~~I 376 (386)
.++..+++.+.+ .+.++.|+++|........ .+...+.+++.+|+|+++.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~------~~~~~~~ie~~~glPv~d~~ 335 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYA------AKEAIAHTIAETGLPCTDVV 335 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHH------HHHHHHHHHHHHCSCEECHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHH------HHHHHHHHHHHHCCCEEEEe
Confidence 778888888765 6789999999987654321 12468999999999998754
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.58 E-value=7.3e-08 Score=86.18 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=39.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
++...|.++|||+||||++.++|..++++|++|+++|+|+++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 45778888999999999999999999999999999999997643
No 59
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.51 E-value=7.9e-07 Score=85.04 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=78.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCc-cCCCcccccccCCCCCceeeeccCCceEEec
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (386)
...+|+++ |++|+||||+..+|+..++..|.+|.++|.|++.+.... +++........ ...++..+.+.
T Consensus 55 ~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~~ 124 (341)
T 2p67_A 55 NTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRPV 124 (341)
T ss_dssp CSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEEE
T ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeecC
Confidence 45688887 699999999999999999999999999999997754321 22211110000 00112222221
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 016622 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~ 330 (386)
.... ..+......++.+. ...+..|+++|+|||+ ..+....+ ...+|.+++|+.+.... .... ++. .
T Consensus 125 ~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG-~~~~~~~~--~~~aD~vl~Vvd~~~~~--~~~~-l~~-~ 191 (341)
T 2p67_A 125 PSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVG-VGQSETEV--ARMVDCFISLQIAGGGD--DLQG-IKK-G 191 (341)
T ss_dssp CC----------CHHHHHHHHHH-HHHHTTCSEEEEEEEC-CTTHHHHH--HTTCSEEEEEECC--------CC-CCH-H
T ss_pred cccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCC-ccchHHHH--HHhCCEEEEEEeCCccH--HHHH-HHH-h
Confidence 1100 11112222333322 2223789999999985 43332222 45679999999875431 1110 000 0
Q ss_pred cCCCCeEEEEEcCCcCC
Q 016622 331 KLKVPCIAVVENMCHFD 347 (386)
Q Consensus 331 ~~~~~i~gvVlN~~~~~ 347 (386)
..+.+. .+|+||++..
T Consensus 192 ~~~~p~-ivv~NK~Dl~ 207 (341)
T 2p67_A 192 LMEVAD-LIVINKDDGD 207 (341)
T ss_dssp HHHHCS-EEEECCCCTT
T ss_pred hhcccC-EEEEECCCCC
Confidence 012333 4888999864
No 60
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.37 E-value=4.8e-06 Score=78.25 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=94.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 251 (386)
.+.+|+++ |.+|+||||+...||..+...|.+|.+.+.|.++...... +.. .....++.+++..
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~q------l~~---------~~~~~~i~~v~q~ 164 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQ------LSE---------WGKRLSIPVIQGP 164 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHH------HHH---------HHHHHTCCEECCC
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHH------HHH---------HHHhcCceEEEeC
Confidence 45699999 6799999999999999999888999999999876431100 000 0000133344322
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH--H--------hhh--hhcCCCeEEEEeCCCcchH
Q 016622 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L--------TLC--QVVPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--~--------~~~--~~~~~d~vviV~~~~~~s~ 319 (386)
...... ....+.+.... ...+|++++|+++...... . .++ .....+.++++..+...
T Consensus 165 ~~~~p~-----~~v~~~v~~~~----~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~-- 233 (304)
T 1rj9_A 165 EGTDSA-----ALAYDAVQAMK----ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG-- 233 (304)
T ss_dssp TTCCHH-----HHHHHHHHHHH----HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--
T ss_pred CCCCHH-----HHHHHHHHHHH----hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--
Confidence 111110 01112222221 1468999999987543111 0 000 01124667778776543
Q ss_pred HHHHHHHHHHH-cCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~-~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.++...++.+. ..+ +.++|+|+.+....+ +..-.+...++.|+..
T Consensus 234 ~~~~~~~~~~~~~~~--~t~iivTh~d~~a~g--------g~~l~i~~~~~~pi~~ 279 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVG--LTGVIVTKLDGTAKG--------GVLIPIVRTLKVPIKF 279 (304)
T ss_dssp THHHHHHHHHHHHHC--CSEEEEECTTSSCCC--------TTHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHHHcC--CcEEEEECCcccccc--------cHHHHHHHHHCCCeEE
Confidence 23333344443 234 367899997654321 4567888889988764
No 61
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.21 E-value=9.5e-06 Score=77.89 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=122.7
Q ss_pred HHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHhhcCCCcce--eEEEEEe
Q 016622 80 VLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNK--VNVTMSA 154 (386)
Q Consensus 80 i~~~L~~V~dPe~~~di---v~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~i~~~i~e~l~~l~gv~~--v~v~l~~ 154 (386)
|.+.|+++++..+..|| +...++++++.+..+.++ ...+.+.+.+++.+..+.+... ..+++.
T Consensus 86 ~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~l~~~l~~~~~~~~l~l~- 153 (359)
T 2og2_A 86 TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKL-----------KSGSEIKDALKESVLEMLAKKNSKTELQLG- 153 (359)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC-----------CSHHHHHHHHHHHHHHHHCCC---CSCCCC-
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHHHhCCcccCCCccee-
Confidence 45555566566566665 335566665432211111 1256777777777766544321 011111
Q ss_pred CCCCchhcccccccccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCC
Q 016622 155 QPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK 234 (386)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~ 234 (386)
-..+.+|+++ |.+|+||||+...||..+...+.+|++.+.|.++..... .+.
T Consensus 154 ---------------~~~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~e------ql~------ 205 (359)
T 2og2_A 154 ---------------FRKPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASD------QLE------ 205 (359)
T ss_dssp ---------------SSSSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHH------HHH------
T ss_pred ---------------cCCCeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccccchhH------HHH------
Confidence 1234699999 679999999999999999988899999999976532100 000
Q ss_pred CceeeeccCCceEEecCCC-CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH----------HHhhhh--
Q 016622 235 RTIIPTEYLGVKLVSFGFS-GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----------QLTLCQ-- 301 (386)
Q Consensus 235 ~~i~~~~~~~l~vl~~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~----------~~~~~~-- 301 (386)
......++.+++.... ... .....+.+.... . ..+|.+++|+.+..... ...++.
T Consensus 206 ---~~~~r~~i~~v~q~~~~~~p-----~~tv~e~l~~~~---~-~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral 273 (359)
T 2og2_A 206 ---IWAERTGCEIVVAEGDKAKA-----ATVLSKAVKRGK---E-EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIV 273 (359)
T ss_dssp ---HHHHHHTCEEECCSSSSCCH-----HHHHHHHHHHHH---H-TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHhcCeEEEEecccccCh-----hhhHHHHHHHHH---h-CCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHH
Confidence 0000124555543221 110 001112222221 1 46899999998643310 011111
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHH-cCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 302 ~~~~d~vviV~~~~~~s~~~~~~~~~~l~-~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
....+.+++|..|. .+++.... .+.+. ..+ +.++|+++.+....+ +..-.+...++.|+..
T Consensus 274 ~~~P~e~lLvLDpt-tglD~~~~-~~~~~~~~g--~t~iiiThlD~~~~g--------G~~lsi~~~~~~pI~~ 335 (359)
T 2og2_A 274 SGAPNEILLVLDGN-TGLNMLPQ-AREFNEVVG--ITGLILTKLDGSARG--------GCVVSVVEELGIPVKF 335 (359)
T ss_dssp TTCCSEEEEEEEGG-GGGGGHHH-HHHHHHHTC--CCEEEEESCTTCSCT--------HHHHHHHHHHCCCEEE
T ss_pred hcCCCceEEEEcCC-CCCCHHHH-HHHHHHhcC--CeEEEEecCcccccc--------cHHHHHHHHhCCCEEE
Confidence 11245678888743 23333333 33343 334 467899997643321 3456777888988763
No 62
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.21 E-value=1e-06 Score=86.03 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=48.2
Q ss_pred CCceEEEEEeCcC---CCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCccc
Q 016622 171 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (386)
Q Consensus 171 ~~~kvI~v~s~kG---GvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~ 226 (386)
...|+|.|+|..+ |+||||+++|||..|++.|+||+++ ++.|+++..||....
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCCC
Confidence 3568999999999 9999999999999999999999998 999999988876543
No 63
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.09 E-value=2.2e-05 Score=73.69 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=89.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
+.+|++. |.+|+||||+...||..+...+.+|.+.+.|.++..... .+. ......++.+++...
T Consensus 100 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~------ql~---------~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 100 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASD------QLE---------IWAERTGCEIVVAEG 163 (302)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHH------HHH---------HHHHHHTCEEECCC-
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHH------HHH---------HHHHhcCceEEEecC
Confidence 4699999 679999999999999999988899999998876532100 000 000011444554221
Q ss_pred C-CCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH----------HHhhhh--hcCCCeEEEEeCCCcchH
Q 016622 253 S-GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----------QLTLCQ--VVPLTAAVIVTTPQKLAF 319 (386)
Q Consensus 253 ~-~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~----------~~~~~~--~~~~d~vviV~~~~~~s~ 319 (386)
. .. ......+.+.... . ..+|.+++|+.+..... ...++. ....+.+++|.+|. .++
T Consensus 164 ~~~~-----~~~~v~e~l~~~~---~-~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt-sgl 233 (302)
T 3b9q_A 164 DKAK-----AATVLSKAVKRGK---E-EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN-TGL 233 (302)
T ss_dssp -CCC-----HHHHHHHHHHHHH---H-TTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGG-GGG
T ss_pred CccC-----HHHHHHHHHHHHH---H-cCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCC-CCc
Confidence 1 00 0001112222211 1 46889999998643311 001110 11245668887743 233
Q ss_pred HHHHHHHHHHH-cCCCCeEEEEEcCCcCCCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 320 IDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 320 ~~~~~~~~~l~-~~~~~i~gvVlN~~~~~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
+.... ++.+. ..+ +.++++++.+.... .+..-.+...++.|+..
T Consensus 234 D~~~~-~~~~~~~~g--~t~iiiThlD~~~~--------~g~~l~~~~~~~~pi~~ 278 (302)
T 3b9q_A 234 NMLPQ-AREFNEVVG--ITGLILTKLDGSAR--------GGCVVSVVEELGIPVKF 278 (302)
T ss_dssp GGHHH-HHHHHHHTC--CCEEEEECCSSCSC--------THHHHHHHHHHCCCEEE
T ss_pred CHHHH-HHHHHHhcC--CCEEEEeCCCCCCc--------cChheehHHHHCCCEEE
Confidence 33333 33343 344 45788898664321 13456777888888763
No 64
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=0.00051 Score=65.63 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=36.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
..+|+++ |.+|+||||+.-.|+..+...|.+|.++..|++...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 4678888 999999999999999999888999999999997654
No 65
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.74 E-value=0.00013 Score=73.65 Aligned_cols=88 Identities=13% Similarity=-0.006 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+.+.|+|||+-..-.......+..+|.+++|+.+...........++.+...++++ -+++||++...... .
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~~~~~------~ 152 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRDIRDP------M 152 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSCCSCH------H
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCccccH------H
Confidence 5788999999964321122223355689999999887654455677777777778885 58889998644211 1
Q ss_pred ChHHHHHHHhCCCeE
Q 016622 359 GSGSQVVQQFGIPHL 373 (386)
Q Consensus 359 ~~~~~i~~~~g~pvl 373 (386)
...+++.+.++.+..
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 246788888886543
No 66
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.60 E-value=0.00033 Score=73.19 Aligned_cols=86 Identities=19% Similarity=0.021 Sum_probs=58.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..|++.|||||+-..-.......+..+|.+++|+.+.......+...++.+...+++++ +|+||++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 56999999999643312222333556799999999877655566677777777788866 778999865421 11
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++.+.++..
T Consensus 153 ~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 153 KVVNQIKTRLGAN 165 (704)
T ss_pred HHHHHHHHHhCCC
Confidence 3567777777754
No 67
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.51 E-value=0.00042 Score=60.39 Aligned_cols=93 Identities=24% Similarity=0.159 Sum_probs=55.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 254 (386)
.|.|+.++| .||||.|..+|..++.+|+||+++=+.-..... |.. .+... . ++.+...+..-
T Consensus 30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~----gE~-~~l~~-----------L-~v~~~~~g~gf 91 (196)
T 1g5t_A 30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPN----GER-NLLEP-----------H-GVEFQVMATGF 91 (196)
T ss_dssp CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCC----HHH-HHHGG-----------G-TCEEEECCTTC
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCc----cHH-HHHHh-----------C-CcEEEEccccc
Confidence 344444776 999999999999999999999999766521000 100 00000 0 13333333210
Q ss_pred CcccccCC-------chHHHHHHHHHHhcCCCCCcEEEEcCC
Q 016622 255 QGRAIMRG-------PMVSGVINQLLTTTEWGELDYLVIDMP 289 (386)
Q Consensus 255 ~~~~~~~~-------~~~~~~l~~ll~~~~~~~yD~VIIDtp 289 (386)
.|.. ......+..+.+.+..+.||+||+|--
T Consensus 92 ----~~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi 129 (196)
T 1g5t_A 92 ----TWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDEL 129 (196)
T ss_dssp ----CCCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETH
T ss_pred ----ccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 0111 123456667777776688999999975
No 68
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.42 E-value=0.0012 Score=62.86 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=84.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCcccccccCCCCCceeeeccCCceEEecCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 252 (386)
.+.|.+++.-.++||||++..|...+.++|+++..+-....+. +.+.. . -++..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~----li~~~-----------~----------gv~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGI----LIGAD-----------A----------GYVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHH----HTTCS-----------E----------ECCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceee----eeccC-----------C----------CCCCC-
Confidence 6799999999999999999999999999999998865332210 11000 0 00000
Q ss_pred CCCcccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-----HHHhhhhhcCCCeEEEEeCCC-----------c
Q 016622 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQ-----------K 316 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-----~~~~~~~~~~~d~vviV~~~~-----------~ 316 (386)
....+.....++.+......++||++|+...+++.. ..+.+..-...|.+|+.-.|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 001111122222222222127999999999987642 122233333568888877654 2
Q ss_pred -chHHHHHHHHHHHHcCCCCeEEEE-EcC
Q 016622 317 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 343 (386)
Q Consensus 317 -~s~~~~~~~~~~l~~~~~~i~gvV-lN~ 343 (386)
.+++....+++.+. +.+++|++ +|.
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45566666666665 78899999 996
No 69
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.37 E-value=0.0011 Score=62.00 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCCCChH----------HHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~----------~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.++|+|||+-.... ......+..+|.+++|+.+... +..+....++.+.+.+.+++ +|+|+++..
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCC
Confidence 6789999998643211 1112223457999999888753 34443333777777777765 788999864
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.36 E-value=0.0025 Score=54.31 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+++.|+|+|+...........+..+|.+++|..... .+..++...+..+.. .+.++ -+|+|+++.....
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl~~~~--- 142 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM-VLVGNKCDLPTRT--- 142 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSCCC---
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECCcCCccc---
Confidence 35789999998643211121222345788888876554 455555555544443 24554 4889999864311
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 143 --~~~~~~~~~~~~~~~~~~~ 161 (190)
T 3con_A 143 --VDTKQAHELAKSYGIPFIE 161 (190)
T ss_dssp --SCHHHHHHHHHHHTCCEEE
T ss_pred --CCHHHHHHHHHHcCCeEEE
Confidence 1123567788888887654
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.36 E-value=0.0029 Score=52.02 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+++.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.++ -+|+|+++.....
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhhhhcc---
Confidence 45788999999743211222222345688888877654 3455555555544332 4554 4889999864321
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 125 --~~~~~~~~~~~~~~~~~~~ 143 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIPYIE 143 (166)
T ss_dssp --SCHHHHHHHHHHHTCCEEE
T ss_pred --cCHHHHHHHHHHcCCeEEE
Confidence 1123567778888887664
No 72
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00028 Score=60.14 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=35.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++++|+|++ ..|+||||++..|+..|..+|++|.++..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 456888885 669999999999999999999999999998864
No 73
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.28 E-value=0.0012 Score=60.16 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCChH------------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGDI------------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~------------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~ 346 (386)
..+++.|+|||+..... .........+|.+++|+.... ..........+.+.+.+++ +|+||++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 34578999998643211 111111146799999988765 3455566677777788765 88899885
Q ss_pred CCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 347 DADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
...... ....+.+.+.+|+|++.
T Consensus 123 ~~~~~~-----~~~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 123 AEHRGI-----SIDTEKLESLLGCSVIP 145 (256)
T ss_dssp HHHTTC-----EECHHHHHHHHCSCEEE
T ss_pred CCcCCc-----HHHHHHHHHHcCCCEEE
Confidence 432111 12367788999988764
No 74
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.27 E-value=0.0019 Score=61.25 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=36.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+.+++++ |..|+||||+.-.|+..+...+.+|.++..|+..
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 34688888 9999999999999999998888899999999854
No 75
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.26 E-value=0.0014 Score=63.82 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCCh-HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+ .......+..+|.+++|+.+.........+.+..+...+++.+-+++||++..
T Consensus 73 ~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPG-HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCC-SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 567899999985 433 22333335568999999988765556677777888888888566889999864
No 76
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.15 E-value=0.0031 Score=63.85 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|++|-+=|||||+-..-..-....+..+|++++|+.+...--..+...++.+.+.+++++ +++||++......
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad~------ 169 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREALHP------ 169 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCCCH------
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhcch------
Confidence 477889999999633211222233667799999999988877889999999999999977 6779998654321
Q ss_pred CChHHHHHHHhCCCeE
Q 016622 358 RGSGSQVVQQFGIPHL 373 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl 373 (386)
....+++.+.++...+
T Consensus 170 ~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 LDVMADIEQHLQIECA 185 (548)
T ss_dssp HHHHHHHHHHHTSEEE
T ss_pred hHhhhhhhhhcCCceE
Confidence 1357888899886543
No 77
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.15 E-value=0.00021 Score=72.16 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+.+.|+|||+-..-.......+..+|.+++|+.+...........+..+...+++++ +|+||++...... .
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~~~~~------~ 152 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRDTRPS------I 152 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSCCSCH------H
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccccH------H
Confidence 57889999999643222223333556899999999877555666777888888888865 7789998643211 1
Q ss_pred ChHHHHHHHhCCCeE
Q 016622 359 GSGSQVVQQFGIPHL 373 (386)
Q Consensus 359 ~~~~~i~~~~g~pvl 373 (386)
...+++.+.++....
T Consensus 153 ~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 153 ELLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHhhCCCce
Confidence 246778888886543
No 78
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.11 E-value=0.001 Score=63.85 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.|+ +.+|+||||++.++|..+++.|.+|++||++.
T Consensus 75 ~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 466665 88999999999999999999999999999985
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.06 E-value=0.0017 Score=53.82 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc--CCCCeEEEEEcCCcCCCCCceeccc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYPF 356 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~--~~~~i~gvVlN~~~~~~~~~~~~~~ 356 (386)
.+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.. .+.+ +-+|+|+++.......
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~---- 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCI---- 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSS----
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccccc----
Confidence 56899999986321111111224457898988877553 45555555544433 2455 4488899986432111
Q ss_pred CCChHHHHHHHhCCCeEE
Q 016622 357 GRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 357 ~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (168)
T 1z2a_A 128 KNEEAEGLAKRLKLRFYR 145 (168)
T ss_dssp CHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHHcCCeEEE
Confidence 113456777788876643
No 80
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.05 E-value=0.003 Score=60.70 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=48.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEc-CCcC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN-~~~~ 346 (386)
..+.+.|+|||+-..-.......+..+|.+++|+. .......+.+.+..++..+++..-+++| |++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 56779999998643322223333556899999998 6655667788888888889998667888 9886
No 81
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.00 E-value=0.0063 Score=61.20 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=40.7
Q ss_pred CceEEEEE-eCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 172 ISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 172 ~~kvI~v~-s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
|+|.|.|+ +.-.|+||+++++.|++.|+++|+||..+.+||+-+
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n 55 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVN 55 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSC
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccc
Confidence 67899999 889999999999999999999999999999997653
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.97 E-value=0.011 Score=48.47 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+......+.+ .+.++ -+|+|+++.......
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~-- 126 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREV-- 126 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECGGGGGGCCS--
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCcccccccC--
Confidence 4568999998643322222222345688888877654 345555554444322 35554 588899985432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++.++.+++.
T Consensus 127 --~~~~~~~~~~~~~~~~~~ 144 (167)
T 1kao_A 127 --SSSEGRALAEEWGCPFME 144 (167)
T ss_dssp --CHHHHHHHHHHHTSCEEE
T ss_pred --CHHHHHHHHHHhCCCEEE
Confidence 112456777778887654
No 83
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.97 E-value=0.0076 Score=51.99 Aligned_cols=91 Identities=13% Similarity=0.213 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.++ -+|.|+++......
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~-- 146 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSPERE-- 146 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTCGGGCC--
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccCccccc--
Confidence 46788999998633211112222445788888877653 4566666666666543 4554 48889998643211
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+.+++.++.+++.
T Consensus 147 --v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 147 --VQAVEGKKLAESWGATFME 165 (201)
T ss_dssp --SCHHHHHHHHHHHTCEEEE
T ss_pred --cCHHHHHHHHHHhCCeEEE
Confidence 1113466778888876654
No 84
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.96 E-value=0.012 Score=50.10 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCeEEEEEcCCcCCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDAD 349 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~----s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~~~~ 349 (386)
..+.+.|+|+|+...........+..+|.+++|...... .......+.+++... +.+ +-+|.|+++....
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~ 150 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDA 150 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTC
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcccc
Confidence 456789999997432222222235567999999888743 223333344444432 445 4588899986442
Q ss_pred CceecccCCChHHHHHHHhCC-CeE
Q 016622 350 GKRYYPFGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~g~-pvl 373 (386)
- .....+++++..+. +++
T Consensus 151 ~------~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 151 L------PVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp C------CHHHHHHHHCTTCCSCEE
T ss_pred c------CHHHHHHHHHhcCCceEE
Confidence 1 11234555555565 544
No 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.96 E-value=0.0077 Score=50.18 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCCC--hHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCce
Q 016622 280 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 280 ~yD~VIIDtpp~~~--~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~ 352 (386)
.+.+.++|+|+... ...+.......+|.+++|...+ ..++..+......+.+. +.++ -+|.|+++.......
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilv~NK~Dl~~~~~v 129 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPI-ILVGNKADLARCREV 129 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE-EEEEECTTCTTTCCS
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEEChhhcccccc
Confidence 46789999986332 1122222233468888877654 45666666666666543 5554 488999986542211
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++.++.+++.
T Consensus 130 ----~~~~~~~~~~~~~~~~~~ 147 (175)
T 2nzj_A 130 ----SVEEGRACAVVFDCKFIE 147 (175)
T ss_dssp ----CHHHHHHHHHHHTSEEEE
T ss_pred ----CHHHHHHHHHHcCCeEEE
Confidence 112345666777876543
No 86
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.96 E-value=0.0045 Score=57.72 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.++|+|||+.... .......+..+|.+++|+.....--......++.+++. +.+++ +|+|+++..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECcccC
Confidence 4678999999864321 11122234568999999887542112234555667665 66655 788999864
No 87
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.96 E-value=0.012 Score=49.88 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|+|+++.......
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 145 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAV-- 145 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCS--
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--
Confidence 5789999998643222222233456799999988654 455555655555543 3455 4588899986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++++++.
T Consensus 146 --~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 146 --KEEEARELAEKYGIPYFE 163 (195)
T ss_dssp --CHHHHHHHHHHHTCCEEE
T ss_pred --CHHHHHHHHHHcCCCEEE
Confidence 113466777788877654
No 88
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.96 E-value=0.0073 Score=49.75 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.++ -+|+|+++.......
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~- 127 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLEDKRQV- 127 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE-EEEEECGGGGGGCCS-
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccccccCcc-
Confidence 35689999998643222222222345688888877654 345555554444433 25554 488999986432111
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++.+..+++++.
T Consensus 128 ---~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 128 ---SVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp ---CHHHHHHHHHHHTCEEEE
T ss_pred ---CHHHHHHHHHHcCCeEEE
Confidence 113456667777876543
No 89
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.94 E-value=0.011 Score=49.65 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+.. ...+-+|.|+++.......
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--- 135 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV--- 135 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS---
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC---
Confidence 35678999998633211222222445799999988754 45566666666665432 2235588899986432211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++..+++++.
T Consensus 136 -~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 136 -TAEDAQTYAQENGLFFME 153 (181)
T ss_dssp -CHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHHHHHHHcCCEEEE
Confidence 113456677777876543
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.94 E-value=0.0073 Score=50.86 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.+++ +|+|+++.......
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~- 141 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQV- 141 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE-EEEECGGGGGGCCS-
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCcc-
Confidence 34689999998644322222222445788888887654 344555444444332 255654 88899986432111
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++.++++++.
T Consensus 142 ---~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 142 ---SVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp ---CHHHHHHHHHHTTCEEEE
T ss_pred ---CHHHHHHHHHHcCCeEEE
Confidence 113456677777876553
No 91
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.93 E-value=0.017 Score=49.23 Aligned_cols=88 Identities=10% Similarity=-0.026 Sum_probs=52.0
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~-~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.+ .+ ..+-+|+|+++ ...... ..
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~~~~~----~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID-KNKFQV----DI 166 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC-CCS----CH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-cccccC----CH
Confidence 7899999986321111122224467999999887654 45566655555544 34 44568999999 221111 11
Q ss_pred ChHHHHHHHhCCCeEE
Q 016622 359 GSGSQVVQQFGIPHLF 374 (386)
Q Consensus 359 ~~~~~i~~~~g~pvl~ 374 (386)
....++++..+++++.
T Consensus 167 ~~~~~~~~~~~~~~~~ 182 (208)
T 3clv_A 167 LEVQKYAQDNNLLFIQ 182 (208)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3456677777876653
No 92
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.92 E-value=0.0059 Score=56.04 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCCCChH----------H--HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGDI----------Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~----------~--~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~ 346 (386)
..+.+.|+|||+..... . ........+|.+++|+.... ..........+.+.+.+++ +|+||++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 35678999998733211 0 11111236799999988765 3445556666667788865 78899885
Q ss_pred CCCCceecccCCChHHHHHHHhCCCeEE
Q 016622 347 DADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 347 ~~~~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
....... ...+.+.+.+|+|++.
T Consensus 125 ~~~~~~~-----~~~~~l~~~lg~~~i~ 147 (274)
T 3i8s_A 125 AEKQNIR-----IEIDALSARLGCPVIP 147 (274)
T ss_dssp HHHTTEE-----ECHHHHHHHHTSCEEE
T ss_pred hhhhhHH-----HHHHHHHHhcCCCEEE
Confidence 4321111 2367888888888764
No 93
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.92 E-value=0.0043 Score=55.24 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=30.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|.+..|..|+||||.+..++..++.+|.+|+++..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 344445889999999999999999999999999943
No 94
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.91 E-value=0.0054 Score=63.88 Aligned_cols=86 Identities=19% Similarity=0.028 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+.+.|+|||+-..........+..+|.+++|+.+....-......+..+.+.+.+++ +|+||++..... . .
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~--~----~ 145 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN--F----E 145 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC--H----H
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc--h----H
Confidence 56889999999643211222223445799999998866444455566677777788866 778999865421 0 1
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++.+.++..
T Consensus 146 ~~~~~l~~~l~~~ 158 (693)
T 2xex_A 146 YSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 2466777777754
No 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.89 E-value=0.0075 Score=51.37 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|+|+++.......
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-- 145 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVV-- 145 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCC--
Confidence 35678999998643211122222446799999888754 4566666666666543 344 5588999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++++++.
T Consensus 146 --~~~~~~~~~~~~~~~~~~ 163 (189)
T 2gf9_A 146 --PAEDGRRLADDLGFEFFE 163 (189)
T ss_dssp --CHHHHHHHHHHHTCEEEE
T ss_pred --CHHHHHHHHHHcCCeEEE
Confidence 113467788888876653
No 96
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.88 E-value=0.011 Score=49.25 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++.......
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 138 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV-- 138 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc--
Confidence 35678999998632211222222456799999888764 345555555554443 2344 5588999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++..+++++.
T Consensus 139 --~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 139 --TYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp --CHHHHHHHHHHTTCEEEE
T ss_pred --CHHHHHHHHHHcCCEEEE
Confidence 113456777777876643
No 97
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.88 E-value=0.002 Score=62.53 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+. ......+..+|.+++|+.+.........+.+..++..+++.+-+++||++..
T Consensus 64 ~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPG-HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSS-HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCC-hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999985 3321 2222334458999999988775555666777777778888666889999864
No 98
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.0068 Score=50.23 Aligned_cols=91 Identities=9% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+.+. +.+ +-+|+|+++.......
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v 127 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREV 127 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccccccccc
Confidence 35678999998644322222222445688888887654 3455555555544432 455 4588999986432111
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+.+..+++++.
T Consensus 128 ----~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 128 ----QSSEAEALARTWKCAFME 145 (172)
T ss_dssp ----CHHHHHHHHHHHTCEEEE
T ss_pred ----CHHHHHHHHHHhCCeEEE
Confidence 112455667777776543
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.86 E-value=0.0094 Score=49.38 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+ .+.+ +-+|.|+++.......
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 129 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHV-- 129 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCS--
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECccccccccc--
Confidence 35678999998633211222222345788888887654 455555555555543 2344 4588999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++..+.+++.
T Consensus 130 --~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z08_A 130 --SIQEAESYAESVGAKHYH 147 (170)
T ss_dssp --CHHHHHHHHHHTTCEEEE
T ss_pred --CHHHHHHHHHHcCCeEEE
Confidence 113466777778876653
No 100
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.0014 Score=56.20 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=35.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+++|.+. |..|+||||++..||..+...|.+|.++|.|..
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4567766 999999999999999999999999999998754
No 101
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.85 E-value=0.006 Score=63.54 Aligned_cols=86 Identities=16% Similarity=0.044 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+.+.|+|||+-..-.......+..+|.+++|+.+...........+..+.+.+++++ +|+||++...... .
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~------~ 147 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGADL------W 147 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCCH------H
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCCH------H
Confidence 57889999999643322222333455799999998876544555666777777788866 7889998654210 1
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++.+.++..
T Consensus 148 ~~~~~l~~~l~~~ 160 (691)
T 1dar_A 148 LVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 2456777777754
No 102
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.82 E-value=0.0086 Score=51.06 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~--- 139 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVV--- 139 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccccc---
Confidence 4678999998632211112222445799999887654 3455555555555443 444 4588899986443211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++++++.
T Consensus 140 -~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 140 -DYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp -CHHHHHHHHHHTTCCEEE
T ss_pred -CHHHHHHHHHHcCCcEEE
Confidence 113567788888887764
No 103
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.004 Score=53.27 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+.-.........+..+|.+++|.... ..++..+...++.+... +.+ +-+|.|+++.......
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-- 146 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVV-- 146 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc--
Confidence 4677899999852211122222345678999988775 34566666666666552 444 4588899986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+.+++.++++++.
T Consensus 147 --~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 147 --PTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp --CHHHHHHHHHHHTCEEEE
T ss_pred --CHHHHHHHHHHcCCeEEE
Confidence 123466778888887653
No 104
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.80 E-value=0.0022 Score=61.18 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.++ |.+|+||||++.+++..+++.|.+|+++|++.
T Consensus 62 ~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 467776 88999999999999999999999999999974
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.78 E-value=0.011 Score=49.82 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH----cCCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~----~~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+. ..+.++ -+|.|+++.......
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~-- 129 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVI-- 129 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE-EEEEECTTCTTTCCS--
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccchhccee--
Confidence 4678999998633211111122335688888877654 45555555444442 225554 488899986432211
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++.+++.
T Consensus 130 --~~~~~~~~~~~~~~~~~~ 147 (181)
T 3t5g_A 130 --SYEEGKALAESWNAAFLE 147 (181)
T ss_dssp --CHHHHHHHHHHTTCEEEE
T ss_pred --cHHHHHHHHHHhCCcEEE
Confidence 123567788888877654
No 106
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.74 E-value=0.015 Score=49.94 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.++ -+|+|+++.......
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~-- 137 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLEDKRQV-- 137 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTCGGGCCS--
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCccccccc--
Confidence 4678999998644322222222345688888877654 455555555444433 25564 488999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+.+..+++++.
T Consensus 138 --~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 138 --SVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp --CHHHHHHHHHHHTCEEEE
T ss_pred --cHHHHHHHHHHhCCeEEE
Confidence 113456677777876553
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.71 E-value=0.01 Score=48.67 Aligned_cols=68 Identities=6% Similarity=-0.070 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCCCh-------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~-------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
...+.|+|||+.... .......+..+|.+++|.......-.......+.+++.+.++ -+|.|+++...
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 122 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDDPK 122 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCSGG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECccccc
Confidence 446889999864320 111112244678888888776521122234555566556664 48889988643
No 108
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.70 E-value=0.0016 Score=65.53 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=39.7
Q ss_pred ceEEEEE-eCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 173 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 173 ~kvI~v~-s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
+|.|+|+ +.-.|+||+++++.|++.|+++|+||..+.+||+-+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n 46 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYIN 46 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccccc
Confidence 5789999 899999999999999999999999999999997653
No 109
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.69 E-value=0.02 Score=49.27 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+ ....+.+.+. +.++ -+|.|+++...
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 143 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGTT
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecHHhhc
Confidence 34678999998632211111222445788998877554 455555 4455555543 5665 48999998654
No 110
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.69 E-value=0.002 Score=61.66 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++.|+ +.+|+||||++.++|..+++.|.+|++||++.
T Consensus 64 ~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 466666 89999999999999999999999999999964
No 111
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.69 E-value=0.021 Score=49.07 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++.......
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-- 131 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVV-- 131 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCS--
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccccc--
Confidence 35678999998643222222233445799999888754 3556666665555542 444 4588999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++.++++++.
T Consensus 132 --~~~~~~~~~~~~~~~~~~ 149 (203)
T 1zbd_A 132 --SSERGRQLADHLGFEFFE 149 (203)
T ss_dssp --CHHHHHHHHHHHTCEEEE
T ss_pred --CHHHHHHHHHHCCCeEEE
Confidence 113466777888876543
No 112
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.68 E-value=0.0088 Score=50.06 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
.+.+.|+|||+..............+|.+++|...+..........++.+...+.++ -+|.|+++...
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~-ilv~nK~Dl~~ 121 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI-IVAINKMDKPE 121 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCE-EEEEETTTSSC
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCE-EEEEECccCCc
Confidence 456778899863221111112233468888888765543344455556666666774 48889988643
No 113
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.015 Score=49.74 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+.. ...+-+|+|+++.......
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--- 146 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV--- 146 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS---
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc---
Confidence 45688999998633211222222446789998887654 45666666666665432 2235588899986431111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
......++++.++++++
T Consensus 147 -~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 147 -PLKDAKEYAESIGAIVV 163 (192)
T ss_dssp -CHHHHHHHHHTTTCEEE
T ss_pred -CHHHHHHHHHHcCCEEE
Confidence 11345666777776654
No 114
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.68 E-value=0.014 Score=50.52 Aligned_cols=89 Identities=11% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|+|+++.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCC-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc-----
Confidence 4679999998632111111122445799999988754 3455555555555442 344 45889999863211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~ 160 (213)
T 3cph_A 142 VTADQGEALAKELGIPFIE 160 (213)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCEEEE
Confidence 1113456777788877653
No 115
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.67 E-value=0.028 Score=46.89 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----CCCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.+. +.+.+-+|.|+++......
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-- 132 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-- 132 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS--
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc--
Confidence 46789999987432111222224567999999887653 555555555555442 5565678999998643211
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 133 --~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 133 --IKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp --SCHHHHHHHHHHHTCEEEE
T ss_pred --cCHHHHHHHHHHcCCcEEE
Confidence 1113456777788877653
No 116
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.026 Score=47.18 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|+|+++.......
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--- 134 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVV--- 134 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCS---
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCccccc---
Confidence 4678999998643222222222445789999888755 345555555555543 3444 4589999986542211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++..+++++.
T Consensus 135 -~~~~~~~~~~~~~~~~~~ 152 (180)
T 2g6b_A 135 -KREDGEKLAKEYGLPFME 152 (180)
T ss_dssp -CHHHHHHHHHHHTCCEEE
T ss_pred -CHHHHHHHHHHcCCeEEE
Confidence 113456777778877654
No 117
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.64 E-value=0.012 Score=48.60 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|+|+++.....
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---- 124 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV---- 124 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC----
T ss_pred EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc----
Confidence 34678999998632111111122345688888887654 3555555555555442 444 45889999863211
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 125 -~~~~~~~~~~~~~~~~~~~ 143 (170)
T 1g16_A 125 -VTADQGEALAKELGIPFIE 143 (170)
T ss_dssp -SCHHHHHHHHHHHTCCEEE
T ss_pred -cCHHHHHHHHHHcCCeEEE
Confidence 1113456777888877654
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.60 E-value=0.029 Score=48.31 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|+|+++.......
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~-- 131 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVV-- 131 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS--
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc--
Confidence 34679999998643211122222445799999988754 3556666656555442 333 4588999986542211
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++..+++++.
T Consensus 132 --~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 132 --EYDVAKEFADANKMPFLE 149 (206)
T ss_dssp --CHHHHHHHHHHTTCCEEE
T ss_pred --CHHHHHHHHHHcCCeEEE
Confidence 113456677778877654
No 119
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.58 E-value=0.019 Score=47.35 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+.+.+ ...+-+|.|+++.......
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--- 129 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV--- 129 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS---
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccccc---
Confidence 34678999998642211222222445788888887654 35566666666665432 2345578899986432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++..+.+++.
T Consensus 130 -~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z0j_A 130 -MERDAKDYADSIHAIFVE 147 (170)
T ss_dssp -CHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHHHHHHHcCCEEEE
Confidence 113456677777766543
No 120
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.57 E-value=0.019 Score=47.28 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...++.+.+ .+.++ -+|.|+++......
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~-- 125 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDLEDERV-- 125 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE-EEEEECTTCGGGCC--
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE-EEEEECcccccccc--
Confidence 45678999998643211122222345688888876554 455555555444432 25554 48899998643211
Q ss_pred cccCCChHHHHHHHh-CCCeE
Q 016622 354 YPFGRGSGSQVVQQF-GIPHL 373 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~-g~pvl 373 (386)
.......++++.+ +.+++
T Consensus 126 --~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1c1y_A 126 --VGKEQGQNLARQWCNCAFL 144 (167)
T ss_dssp --SCHHHHHHHHHHTTSCEEE
T ss_pred --CCHHHHHHHHHHccCCcEE
Confidence 1113455666666 55554
No 121
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.57 E-value=0.035 Score=47.23 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----------CCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~-----------~~~i~gvVlN~~~~ 346 (386)
..+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.+. +.+++ +|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL-FFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE-EEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE-EEEECcCC
Confidence 567899999986432222222224457999999887654 566666655555433 55544 88899986
Q ss_pred CC
Q 016622 347 DA 348 (386)
Q Consensus 347 ~~ 348 (386)
..
T Consensus 140 ~~ 141 (199)
T 4bas_A 140 AG 141 (199)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 122
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.013 Score=50.76 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
++++.++ |.-|+||||.+..++..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566565 88899999999999999999999999996
No 123
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.53 E-value=0.017 Score=48.53 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH----cCCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~----~~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+-|+|+|+...........+..+|.+++|...... ++..+...+..+. ..+.+++ +|.|+++......
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~--- 140 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHLRK--- 140 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCSTTCC---
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCchhccC---
Confidence 44566799986321111111113346888888776543 4555555444442 2455654 8889998643211
Q ss_pred ccCCChHHHHHHHhCCCeEEe
Q 016622 355 PFGRGSGSQVVQQFGIPHLFD 375 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~~ 375 (386)
......+++++.++++++..
T Consensus 141 -v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 141 -VTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp -SCHHHHHHHHHHHTCCEEEE
T ss_pred -cCHHHHHHHHHHhCCeEEEe
Confidence 11235678888889887653
No 124
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.51 E-value=0.0027 Score=57.81 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=34.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
++.|.++ |-.|+||||++..|+..|...|..++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4567776 789999999999999999989999988887753
No 125
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.51 E-value=0.0043 Score=53.04 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
|+++|+|+ |..|+||||+...|...+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 45688887 6889999999999999999999999999988754
No 126
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.48 E-value=0.012 Score=50.09 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++......
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 143 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRD---- 143 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccc----
Confidence 4678999998632111111122445789999888654 4556666666555442 444 458899998643211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++..+++++.
T Consensus 144 v~~~~~~~~~~~~~~~~~~ 162 (191)
T 2a5j_A 144 VKREEGEAFAREHGLIFME 162 (191)
T ss_dssp SCHHHHHHHHHHHTCEEEE
T ss_pred cCHHHHHHHHHHcCCEEEE
Confidence 1113456777778876654
No 127
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.47 E-value=0.11 Score=42.33 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++....
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~---- 116 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA---- 116 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCC----
Confidence 45789999998643222222223456799999887654 4566666655554332 444 5588999986432
Q ss_pred cccCCChHHHHHHHhCC
Q 016622 354 YPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~ 370 (386)
...+++.+.++.
T Consensus 117 -----~~~~~~~~~~~~ 128 (164)
T 1r8s_A 117 -----MNAAEITDKLGL 128 (164)
T ss_dssp -----CCHHHHHHHTTG
T ss_pred -----CCHHHHHHHhCc
Confidence 124556666553
No 128
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.46 E-value=0.0043 Score=64.06 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccC
Q 016622 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
|++|-+=|||||+-..-.......+..+|++++|+.+...--..++..++.+.+.+++++ +++||.+.......
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~~~----- 137 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGIDLS----- 137 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCCSH-----
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCCHH-----
Confidence 577889999999644323333344667899999999877666678899999999999976 67899986543211
Q ss_pred CChHHHHHHHhCCCe
Q 016622 358 RGSGSQVVQQFGIPH 372 (386)
Q Consensus 358 ~~~~~~i~~~~g~pv 372 (386)
...+++.+.++..+
T Consensus 138 -~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 138 -TVYQDIKEKLSAEI 151 (638)
T ss_dssp -HHHHHHHHTTCCCC
T ss_pred -HHHHHHHHHhCCCc
Confidence 35677888777543
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.46 E-value=0.022 Score=51.72 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCCCCChH------H--HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTGDI------Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~------~--~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
..+.+.|+|+|+..... . ........+|.+++|+..... .........+.+.+.+++ +|+||++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvi-lv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVI-LAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEE-EEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEE-EEEECcCCCCcc
Confidence 45789999999643211 1 111111357999999887654 233345556666777755 888998853311
Q ss_pred ceecccCCChHHHHHHHhCCCeEE
Q 016622 351 KRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.. ....+.+++.+|+|++.
T Consensus 127 ~i-----~~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 127 GM-----KIDRYELQKHLGIPVVF 145 (258)
T ss_dssp TC-----CBCHHHHHHHHCSCEEE
T ss_pred ch-----HHHHHHHHHHcCCCEEE
Confidence 11 12367888888988764
No 130
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.44 E-value=0.021 Score=47.08 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCCCCceecc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+.. ...+-+|.|+++.......
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--- 129 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV--- 129 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS---
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc---
Confidence 35678999998643211222222445799999888754 45666666655554431 2234577799986432111
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
......++++..+++++
T Consensus 130 -~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 130 -DFQEAQSYADDNSLLFM 146 (170)
T ss_dssp -CHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHHHHHcCCeEE
Confidence 11245566677776654
No 131
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.44 E-value=0.013 Score=49.73 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=28.4
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 305 ~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+|.+++|+..............+++...+.+++ +|+|+++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhcC
Confidence 377888887655433344456677777777765 788998864
No 132
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.44 E-value=0.028 Score=46.30 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++........
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~- 127 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGER- 127 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCC-
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccc-
Confidence 34678999998643222222222446799999887654 3556666555555432 333 55888999864321100
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++++..+++++.
T Consensus 128 ~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 128 KVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp CSCHHHHHHHHHHHTCEEEE
T ss_pred CCCHHHHHHHHHHcCCEEEE
Confidence 11123456677777876543
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.02 Score=48.97 Aligned_cols=90 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+... .......+..+|.+++|..... .++..+...+..+.+ .+.++ -+|.|+++.......
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v- 150 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADLDHSRQV- 150 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGGGGGCCS-
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECccccccccc-
Confidence 356789999986443 2222222445789999888754 455555555544433 35554 488999986432111
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++.++++++.
T Consensus 151 ---~~~~~~~~~~~~~~~~~~ 168 (196)
T 2atv_A 151 ---STEEGEKLATELACAFYE 168 (196)
T ss_dssp ---CHHHHHHHHHHHTSEEEE
T ss_pred ---CHHHHHHHHHHhCCeEEE
Confidence 113456777777876654
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.42 E-value=0.0018 Score=64.10 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCC-----hH---HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTG-----DI---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~~---~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
....+.|+|||+-.. .. ......+..+|.+++|+.....-...-....+++++.+.+++ +|+|+++..
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~~ 144 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNT 144 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC---
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccch
Confidence 566789999986221 10 111122334799999988655333334567777877777765 788999864
No 135
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.027 Score=47.99 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-----CCCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~-----~~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.+ .+.+ +-+|+|+++.....
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~-- 130 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQRE-- 130 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCS--
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccc--
Confidence 35678999998633222222222345688888877654 345555554444433 1445 45888999864321
Q ss_pred ecccCCChHHHHHHHhCCCeE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl 373 (386)
........+++.++++++
T Consensus 131 ---~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 131 ---VDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp ---SCHHHHHHHHHHHTCEEE
T ss_pred ---cCHHHHHHHHHHhCCeEE
Confidence 111245566677776654
No 136
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.39 E-value=0.0034 Score=53.63 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=32.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.|. |-.|+||||++..|+..+...|+++..++.|
T Consensus 2 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 567776 8899999999999999999889999999754
No 137
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.38 E-value=0.033 Score=48.03 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v--- 152 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV--- 152 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc---
Confidence 4678999998643222222233456799999988764 3556666666555442 344 4588899986432111
Q ss_pred cCCChHHHHHHHhCC-CeE
Q 016622 356 FGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~-pvl 373 (386)
......++++.+++ +++
T Consensus 153 -~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 153 -SLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp -CHHHHHHHHHHTTCSEEE
T ss_pred -CHHHHHHHHHHcCCCEEE
Confidence 11345677778887 544
No 138
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.37 E-value=0.035 Score=47.06 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCCCChHH--HhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH----cCCCCeEEEEEcCCcCCCCCce
Q 016622 280 ELDYLVIDMPPGTGDIQ--LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~--~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~----~~~~~i~gvVlN~~~~~~~~~~ 352 (386)
.+.+.|+|+|+. .... .....+..+|.+++|..... .++..+...+..+. ..+.++ -+|.|+++......
T Consensus 68 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~- 144 (189)
T 1z06_A 68 RIKIQLWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR-ILVGNKCDLRSAIQ- 144 (189)
T ss_dssp EEEEEEEECCCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE-EEEEECTTCGGGCC-
T ss_pred EEEEEEEECCCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccccce-
Confidence 467999999853 2211 11222446799999988654 34445544444433 234554 48889998643211
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++..+++++.
T Consensus 145 ---v~~~~~~~~~~~~~~~~~~ 163 (189)
T 1z06_A 145 ---VPTDLAQKFADTHSMPLFE 163 (189)
T ss_dssp ---SCHHHHHHHHHHTTCCEEE
T ss_pred ---eCHHHHHHHHHHcCCEEEE
Confidence 1123456777788887654
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.35 E-value=0.019 Score=58.67 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..|.+.|+|||+-..........+..+|.+++|+......-......+..+...+++++ +|+|+++...
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl~~ 139 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDLPS 139 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTSTT
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCccc
Confidence 35788899998543222222233556899999988765433344555555566788854 8889998643
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.018 Score=49.88 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...+..+.+. +.+++ +|.||++...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~ 143 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDLRS 143 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhhhc
Confidence 4678999998643211122222445788998877654 355555 4455555543 55654 8899998643
No 141
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.025 Score=49.56 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++......
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~---- 135 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRA---- 135 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCC----
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccc----
Confidence 4678999998643211112222445788898887654 3556666656555443 333 558889998643211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.......++++..+++++
T Consensus 136 v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 136 VPTEESKTFAQENQLLFT 153 (223)
T ss_dssp SCHHHHHHHHHHTTCEEE
T ss_pred cCHHHHHHHHHHcCCEEE
Confidence 111245666777776654
No 142
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.32 E-value=0.018 Score=56.45 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~-------~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+-..-.......+..+|.+++|+.....++. .+.+.+..+...+++.+-+++||++...
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 578899999986433222333335568999999998876554 4566666777778765668899998643
No 143
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.32 E-value=0.024 Score=48.69 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=53.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCc--e
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGK--R 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~--~ 352 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+... +.++ -+|.|+++...... .
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl~~~~~~~~ 153 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI-MLVGNKADIRDTAATEG 153 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCE-EEEEECGGGHHHHHHTT
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccccccccccc
Confidence 34678999998644322222222445799999988654 4555566555555442 4554 58889998631000 0
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.........+++++..+++++.
T Consensus 154 ~~~v~~~~~~~~~~~~~~~~~~ 175 (199)
T 2p5s_A 154 QKCVPGHFGEKLAMTYGALFCE 175 (199)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEE
T ss_pred ccccCHHHHHHHHHHcCCeEEE
Confidence 0011123456777778876653
No 144
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.31 E-value=0.051 Score=45.24 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~-------~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|+|+++..
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 131 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccc
Confidence 45688999998633211222222345789999887654 345555554444432 3445 45889999863
No 145
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.30 E-value=0.028 Score=46.30 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.++|+|+...........+..+|.+++|...+ ..++..+...+..+.+. +.++ -+|.|+++......
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~-- 123 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSDLVRSRE-- 123 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE-EEEEECTTCCSSCC--
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccccccccc--
Confidence 3567889999863322112222234568888876654 34566666666655443 4554 48889998653221
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+.+++..+.+++.
T Consensus 124 --~~~~~~~~~~~~~~~~~~~ 142 (166)
T 3q72_A 124 --VSVDEGRACAVVFDCKFIE 142 (166)
T ss_dssp --SCHHHHHHHHHHTTCEEEE
T ss_pred --cCHHHHHHHHHHhCCcEEE
Confidence 1123456777777876543
No 146
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.035 Score=48.06 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...++.+.+. +.+ +-+|.||++......
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~---- 148 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERRE---- 148 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccc----
Confidence 4678999998643222222233446799999987654 4555555555555432 333 458889998643211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++..+++++.
T Consensus 149 v~~~~~~~~~~~~~~~~~~ 167 (201)
T 2ew1_A 149 VSQQRAEEFSEAQDMYYLE 167 (201)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCEEEE
Confidence 1113456677777877654
No 147
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.29 E-value=0.024 Score=51.60 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCeEEEEEcCCcCCCC
Q 016622 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 349 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~-~~i~gvVlN~~~~~~~ 349 (386)
..+.+.|+|+|+.... ..........+|.+++|+..... .........+.+.+ .+++ +|+||++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNII-LVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEE-EEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEE-EEEEChhcCcc
Confidence 4567899999863321 11111111357999999876653 33344444455556 6654 88899884321
Q ss_pred CceecccCCChHHHHHHHhCCCeEE
Q 016622 350 GKRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 350 ~~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.. .....+.+.+.+|+|++.
T Consensus 125 ~~-----~~~~~~~l~~~lg~~~~~ 144 (271)
T 3k53_A 125 KG-----AKIDIKKMRKELGVPVIP 144 (271)
T ss_dssp HT-----CCCCHHHHHHHHSSCEEE
T ss_pred cc-----cHHHHHHHHHHcCCcEEE
Confidence 00 012377888899988764
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.28 E-value=0.018 Score=56.55 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~-------~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..........+..+|.+++|+.+..... ....+.+..+...+++.+-+++||++..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 56789999998532222222233445799999998876433 3567777777788888566889999863
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.27 E-value=0.013 Score=58.37 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s-------~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+--.-.......+..+|.+++|+...... .....+.+..+...+.+.+-+|+||++...
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 5688999999853322223333455689999999887642 135666677777778775668999998643
No 150
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.029 Score=47.51 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. ....+-+|+|+++.....
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~---- 137 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE---- 137 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC----
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc----
Confidence 35779999998632211111222446799999887654 3555666666666543 122355889999863321
Q ss_pred ccCCChHHHHHHHhCCCeE
Q 016622 355 PFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl 373 (386)
.......++++..+++++
T Consensus 138 -~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 138 -VDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp -SCHHHHHHHHHHTTCEEE
T ss_pred -cCHHHHHHHHHHcCCEEE
Confidence 111345666777776654
No 151
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.23 E-value=0.064 Score=44.99 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+......+.. .+.++ -+|.|+++.....
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM-VLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccCcccc----
Confidence 4567889998633211111112334688888877654 345555555554433 24554 4888999865321
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+.+++.++.+++.
T Consensus 126 -~~~~~~~~~~~~~~~~~~~ 144 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIPFIE 144 (189)
T ss_dssp -SCHHHHHHHHHHHTCCEEE
T ss_pred -cCHHHHHHHHHHcCCeEEE
Confidence 1123567788888887654
No 152
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.22 E-value=0.0076 Score=51.86 Aligned_cols=90 Identities=7% Similarity=-0.005 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCeEEEEEcCCcCCC-CCc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDA-DGK 351 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~------~~~~i~gvVlN~~~~~~-~~~ 351 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++... ...
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 150 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQ 150 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------C
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhcc
Confidence 5678999998532211222222445789999888754 355666666666654 2344 558999998643 211
Q ss_pred eecccCCChHHHHHHHhCCCeEE
Q 016622 352 RYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 352 ~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......++++.++++++.
T Consensus 151 ----v~~~~~~~~~~~~~~~~~~ 169 (208)
T 2yc2_C 151 ----VRLDMAQDWATTNTLDFFD 169 (208)
T ss_dssp ----CCHHHHHHHHHHTTCEEEE
T ss_pred ----CCHHHHHHHHHHcCCEEEE
Confidence 1113466777888876543
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.20 E-value=0.0071 Score=52.57 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3577777 8899999999999999998888899999888654
No 154
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.18 E-value=0.0027 Score=58.87 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=33.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
..+|+|+ |-.|+||||+|..|+..+...|.++.+||+|-..
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4588888 7889999999999999988778899999999755
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0063 Score=54.14 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.++.++ |.+|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 466666 889999999999999999999999999998763
No 156
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.14 E-value=0.035 Score=57.94 Aligned_cols=87 Identities=20% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
++|-+=|||||+-.+-..-....+..+|++++|+.+...--..++..++.+.+.+++++ +++||++...... .
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~~------~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGANF------L 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCCH------H
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCccH------H
Confidence 35667799999644322222333556799999999887766788999999999999976 6779998644221 1
Q ss_pred ChHHHHHHHhCCCe
Q 016622 359 GSGSQVVQQFGIPH 372 (386)
Q Consensus 359 ~~~~~i~~~~g~pv 372 (386)
...+++.+.++...
T Consensus 156 ~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 156 RVVEQIKKRLGHTP 169 (709)
T ss_dssp HHHHHHHHHHCSCE
T ss_pred HHHHHhhhhcccce
Confidence 35778888887543
No 157
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.14 E-value=0.11 Score=42.74 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++......+..+.+ .+.+ +-+|.|+++...
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQ 122 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcC
Confidence 35678999998642211222222345799999887654 356666555544432 2444 558899988643
No 158
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.12 E-value=0.045 Score=45.98 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++.......
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--- 133 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREV--- 133 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---
Confidence 3678999998643222222233445789999887654 345555555544433 2444 5588999986432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++..+++++.
T Consensus 134 -~~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 134 -TFLEASRFAQENELMFLE 151 (186)
T ss_dssp -CHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHHHHHHHcCCEEEE
Confidence 112456667777776653
No 159
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.11 E-value=0.033 Score=46.34 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|+|+++.......
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--- 137 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQV--- 137 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCS---
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcC---
Confidence 4678999998632211111222446789999888754 345555555554433 2444 4588999986432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
........++..+++++.
T Consensus 138 -~~~~~~~~~~~~~~~~~~ 155 (179)
T 2y8e_A 138 -STEEGERKAKELNVMFIE 155 (179)
T ss_dssp -CHHHHHHHHHHHTCEEEE
T ss_pred -CHHHHHHHHHHcCCeEEE
Confidence 112455666777876654
No 160
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.10 E-value=0.023 Score=47.45 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-CCCeEEEEEcCCcCCCCCceecccC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFG 357 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-~~~i~gvVlN~~~~~~~~~~~~~~~ 357 (386)
.+.+.|+|+|+.-.........+..+|.+++|..... .+...+...+..+.+. ....+-+|.|+++...... ..
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~ 132 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV----VE 132 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC----SC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc----cC
Confidence 3678999998632111111122445788888887654 4555666555555443 2223458899998543211 11
Q ss_pred CChHHHHHHHhCCCeEE
Q 016622 358 RGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 358 ~~~~~~i~~~~g~pvl~ 374 (386)
......+++..+.+++.
T Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 133 TEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 23466777778877654
No 161
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.019 Score=49.05 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~ 348 (386)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+... +.+ +-+|.||++...
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~ 145 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4678999998643222222222445799999988654 3555555555555443 344 558899998643
No 162
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.17 Score=42.65 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVK 130 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCc
Confidence 346789999986432111212224567999999887553 56777666655544 2444 55889999864
No 163
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.02 E-value=0.043 Score=45.22 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChHH-HhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCce
Q 016622 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~ 352 (386)
..+.+.++|+|+...... +.......+|.+++|...+. .++..+...+..+.+. +.+++ +|.|+++......
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~- 126 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSRE- 126 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCGGGCC-
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcchhhccc-
Confidence 356788999986432111 11111334688888877654 3555555555544332 45544 8889998643211
Q ss_pred ecccCCChHHHHHHHhCCCeEE
Q 016622 353 YYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++.+++.
T Consensus 127 ---~~~~~~~~~~~~~~~~~~~ 145 (169)
T 3q85_A 127 ---VSLEEGRHLAGTLSCKHIE 145 (169)
T ss_dssp ---SCHHHHHHHHHHTTCEEEE
T ss_pred ---CCHHHHHHHHHHcCCcEEE
Confidence 1123566778888876653
No 164
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.02 E-value=0.019 Score=59.50 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..+.+.|+|||+-..........+..+|.+++|+.+...--....+.++.+.+.+++++ +|+|+++.. .. . .
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~--~----~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD--Y----Y 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC--H----H
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh--H----H
Confidence 46788999998533212222233445799999988766544556677788877888877 778999865 21 1 1
Q ss_pred ChHHHHHHHhC
Q 016622 359 GSGSQVVQQFG 369 (386)
Q Consensus 359 ~~~~~i~~~~g 369 (386)
...+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 34677777777
No 165
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.00 E-value=0.039 Score=47.31 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~-------~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|+|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCc
Confidence 35679999998632111111122345799999987654 345555444443322 2445 45888999865
No 166
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.00 E-value=0.0039 Score=61.21 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
....+.|+|||+...+ .......+..+|.+++|+.....--..-....+.+++.+.+++ +|+||++...
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~~~ 125 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTE 125 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC--
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCcc
Confidence 5567899999864210 0111122345799998887654211222456667777777755 8889998643
No 167
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0078 Score=52.70 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.++|+|+ |.+|+||||+..+|+..+... +++.+++.|+.
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 3577777 799999999999999988655 89999999885
No 168
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.98 E-value=0.027 Score=50.61 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChHH---------Hh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------CCCeEEEE
Q 016622 279 GELDYLVIDMPPGTGDIQ---------LT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 340 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~---------~~---~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~------~~~i~gvV 340 (386)
....++|+|||+-..... .. ......+|.+++|+..+.... .....++.+.+. +. .+-++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~-~iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKW-MVIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGG-EEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhcc-EEEEE
Confidence 456799999996322100 00 011145789999988775432 223344444332 33 35578
Q ss_pred EcCCcCCCCCceecc--cCCChHHHHHHHhCCCeE
Q 016622 341 ENMCHFDADGKRYYP--FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 341 lN~~~~~~~~~~~~~--~~~~~~~~i~~~~g~pvl 373 (386)
.|+.+........+. .....++++.+.+|.++.
T Consensus 146 ~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~ 180 (247)
T 3lxw_A 146 TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVC 180 (247)
T ss_dssp ECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred EchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEE
Confidence 899876432111110 011246777788886654
No 169
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.98 E-value=0.039 Score=45.97 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH----HcCCCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l----~~~~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+ ...+.++ -+|+|+++......
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~--- 131 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADLESQRQ--- 131 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGGGGGCC---
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccccccc---
Confidence 4678899998633211111111334688888877655 3455555444433 2235554 48889998643211
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
........+++..+++++.
T Consensus 132 -v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 132 -VPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp -SCHHHHHHHHHHTTCEEEE
T ss_pred -cCHHHHHHHHHHcCCeEEE
Confidence 1113455666677766543
No 170
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.97 E-value=0.091 Score=43.58 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-------CCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~-------~~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.. .+.++ -+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE-EEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE-EEEEECCccc
Confidence 46799999986432222222234457888888776543 44444444444432 34454 4888999864
No 171
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.97 E-value=0.1 Score=44.06 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.++ -+|.|+++...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~ 138 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV-LVLGNKRDLPG 138 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE-EEEEECCCCcc
Confidence 46789999998632111111122446799999988754 456666655554432 35554 58889998643
No 172
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.97 E-value=0.021 Score=50.30 Aligned_cols=37 Identities=14% Similarity=-0.023 Sum_probs=31.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+++..++ |.-|.||||.+..++..+..+|++|+++-.
T Consensus 28 G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 28 GWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4555555 888999999999999999999999999963
No 173
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.88 E-value=0.011 Score=50.12 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=34.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++.|+++ |..|+||||++..|+..+...|.++..+|.|...
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4577777 8899999999999999998889999989877544
No 174
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.87 E-value=0.018 Score=53.46 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCCC-hHHH---------hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTG-DIQL---------TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~-~~~~---------~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.++++|||+ .. .... ....+..+|.+++|+.....+- ......+.+...+.+++ +|+|+++..
T Consensus 54 ~~~~i~~iDTpG-~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~i-lvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPG-LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVI-LAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSS-CCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCEE-EEEESTTTC
T ss_pred CCeeEEEEECcC-CCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 455788889874 33 1110 0111234577777776644322 23355566666667765 666998864
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.87 E-value=0.011 Score=51.23 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=36.0
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
..+.+|+++ |..|+||||++..||..+...|..+..+|.|...
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 345688887 9999999999999999998888877889987544
No 176
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.78 E-value=0.08 Score=44.87 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +. .+-+|+|+++.......
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~~~~~~-- 148 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI-VVMLVGNKSDLSQAREV-- 148 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTC-EEEEEEECGGGGGGCCS--
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-eEEEEEECCCccccccc--
Confidence 35678999998643211122222446788888887654 3455555655555543 33 35588999986432111
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......+++..+++++.
T Consensus 149 --~~~~~~~~~~~~~~~~~~ 166 (193)
T 2oil_A 149 --PTEEARMFAENNGLLFLE 166 (193)
T ss_dssp --CHHHHHHHHHHTTCEEEE
T ss_pred --CHHHHHHHHHHcCCEEEE
Confidence 113456667777776554
No 177
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0078 Score=54.31 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHH-----CCCcEEEEEcCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 214 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~-----~G~rVllID~D~~~ 214 (386)
.+.+|+|+ |..|+||||+|..|+..|.. .|++|.++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34578887 89999999999999987753 36789999998644
No 178
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.77 E-value=0.02 Score=58.40 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCceecccCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~~~~~~~~ 358 (386)
..|.+-|+|||+-..........+..+|.+++|+......-......+..+...+++++ +|+|+++...... .
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl~~a~~------~ 141 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDLPAADP------E 141 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTSTTCCH------H
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCcccccH------H
Confidence 35788999998533222222223445799999988755322334444445556678754 7889998654211 1
Q ss_pred ChHHHHHHHhCCC
Q 016622 359 GSGSQVVQQFGIP 371 (386)
Q Consensus 359 ~~~~~i~~~~g~p 371 (386)
...+++.+.++.+
T Consensus 142 ~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 142 RVAEEIEDIVGID 154 (599)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 2345666666653
No 179
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.77 E-value=0.17 Score=42.90 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
+.+.+.++|+|+...........+..+|.+++|...... ++..+...+..+.+ .+.+ +-+|.||++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 346789999986322111111223457899998887554 56666666555433 3455 4588999986431
Q ss_pred cccCCChHHHHHHHhC
Q 016622 354 YPFGRGSGSQVVQQFG 369 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g 369 (386)
...+++.+.++
T Consensus 140 -----~~~~~~~~~~~ 150 (190)
T 1m2o_B 140 -----VSEAELRSALG 150 (190)
T ss_dssp -----CCHHHHHHHTT
T ss_pred -----CCHHHHHHHhC
Confidence 23455666654
No 180
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.17 Score=42.73 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=52.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCCCCce--
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDADGKR-- 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~-- 352 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+.+. +.++ -+|.|+++.......
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~ 142 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDLRDDPKTLA 142 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTSTTCHHHHH
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhcccccchh
Confidence 34678899998643211222222445799999887654 3455655 455555543 5554 488999986432100
Q ss_pred ------ecccCCChHHHHHHHhCC-CeE
Q 016622 353 ------YYPFGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 353 ------~~~~~~~~~~~i~~~~g~-pvl 373 (386)
..........++++.++. +++
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 143 RLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp HHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred hcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 001112345667777776 554
No 181
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.76 E-value=0.011 Score=51.88 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+++++ |..|+||||++..++..++..|.+|++++.+.
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 477776 88999999999999998888888999999876
No 182
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.74 E-value=0.074 Score=48.59 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCCChH------HHhhhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCc
Q 016622 280 ELDYLVIDMPPGTGDI------QLTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGK 351 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~------~~~~~~~--~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~ 351 (386)
.+.+.|+|||+..... .+....+ ..+|.+++|..... ..........+.+.+.+++ +|+||++......
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVT-IALNMIDVLDGQG 124 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEE-EEEECHHHHHHTT
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEE-EEEEChhhCCcCC
Confidence 4578999998643210 1111112 24788888877654 3334445555666677755 8889988532110
Q ss_pred eecccCCChHHHHHHHhCCCeEE
Q 016622 352 RYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 352 ~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
. ....+.+++.+|+|++.
T Consensus 125 ----~-~~~~~~l~~~lg~~vi~ 142 (272)
T 3b1v_A 125 ----K-KINVDKLSYHLGVPVVA 142 (272)
T ss_dssp ----C-CCCHHHHHHHHTSCEEE
T ss_pred ----c-HHHHHHHHHHcCCCEEE
Confidence 0 12467888888887754
No 183
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.73 E-value=0.033 Score=53.90 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=47.6
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s-~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.|+|||+-..........+..+|.+++|+...... ...+.+.+..++..+.+.+-+|+||++..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 67999999863322223333355689999999887753 66777777777777775566899999864
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.041 Score=46.66 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCCCC---hHHHhhh-hhcCCCeEEEEeCCC--cchHHHHHHHHHHH-Hc------CCCCeEEEEEcCCcC
Q 016622 280 ELDYLVIDMPPGTG---DIQLTLC-QVVPLTAAVIVTTPQ--KLAFIDVAKGVRMF-SK------LKVPCIAVVENMCHF 346 (386)
Q Consensus 280 ~yD~VIIDtpp~~~---~~~~~~~-~~~~~d~vviV~~~~--~~s~~~~~~~~~~l-~~------~~~~i~gvVlN~~~~ 346 (386)
.+.+.|+|+|+... .....+. ....+|.+++|.... ..++..+...+..+ .. .+.++ -+|+|+++.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 168 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSEL 168 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTS
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCE-EEEEEchHh
Confidence 56788899985321 1111111 111258888888775 33444444433322 11 24554 488899986
Q ss_pred CC
Q 016622 347 DA 348 (386)
Q Consensus 347 ~~ 348 (386)
..
T Consensus 169 ~~ 170 (193)
T 2ged_A 169 FT 170 (193)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.72 E-value=0.011 Score=55.32 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
..+.++ +.+|+||||++.++|..++.+|.+|+++.+..
T Consensus 69 ~l~li~-G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345554 99999999999999999999999999999885
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.69 E-value=0.055 Score=51.45 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCCCCh-------------HHHhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 016622 280 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~-------------~~~~~~~~~~~d~vviV~~~~~--~s~~~~~~~~~~l~~~~~~i~gvVlN~~ 344 (386)
..++.|+|||+-... ..+....+..+|.+++|+.+.. ....+..+.++.+...+.+++ +|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999963221 2222233446788888776532 222445556666666677766 667998
Q ss_pred cCCC
Q 016622 345 HFDA 348 (386)
Q Consensus 345 ~~~~ 348 (386)
+...
T Consensus 214 Dl~~ 217 (360)
T 3t34_A 214 DLMD 217 (360)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 8643
No 187
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.68 E-value=0.011 Score=51.68 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=30.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+++++ |.+|+||||++.++|. ..|.+|++++.+.
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 466666 9999999999999998 5688999999876
No 188
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.0072 Score=51.44 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
|+++++|++ ..|+||||++..|+..+...|+++..|..|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 457899995 88999999999999999999988888877753
No 189
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.62 E-value=0.049 Score=46.17 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~------~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.++ -+|+|+++...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 140 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI-LFFANKMDLRD 140 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCE-EEEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeE-EEEEeCcCccc
Confidence 35789999998643322222223446799999988765 346666555554433 24554 48899998643
No 190
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.60 E-value=0.042 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLA 195 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA 195 (386)
..|+|+ |..|+||||+.-.|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 467777 899999999987764
No 191
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.57 E-value=0.24 Score=41.47 Aligned_cols=69 Identities=6% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~ 348 (386)
+.+.+.|+|||+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.||++...
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 133 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPG 133 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCC
Confidence 35678999998532111111122345789999888654 456666665555433 2444 558899998643
No 192
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.53 E-value=0.051 Score=50.29 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCC-------------hHHHhhhhhcCCCeEEEEeCCC-cc-hHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 016622 280 ELDYLVIDMPPGTG-------------DIQLTLCQVVPLTAAVIVTTPQ-KL-AFIDVAKGVRMFSKLKVPCIAVVENMC 344 (386)
Q Consensus 280 ~yD~VIIDtpp~~~-------------~~~~~~~~~~~~d~vviV~~~~-~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~ 344 (386)
.++++|+|||+... ........+..+|.+++|+.+. .. .-.+.....+.+...+.+++ +|+||+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK~ 208 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITKL 208 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEECT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcCc
Confidence 47899999996432 0111122244678888877652 21 11223456677777777765 677999
Q ss_pred cCCC
Q 016622 345 HFDA 348 (386)
Q Consensus 345 ~~~~ 348 (386)
+...
T Consensus 209 Dl~~ 212 (315)
T 1jwy_B 209 DLMD 212 (315)
T ss_dssp TSSC
T ss_pred ccCC
Confidence 8643
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.52 E-value=0.087 Score=46.73 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=44.1
Q ss_pred CCCcEEEEcCCCCCCh--------HHHhhh---hhcCCCeEEEEeCCCcchHH---HHHHHHHHHHc-CCCCeEEEEEcC
Q 016622 279 GELDYLVIDMPPGTGD--------IQLTLC---QVVPLTAAVIVTTPQKLAFI---DVAKGVRMFSK-LKVPCIAVVENM 343 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~~~~~---~~~~~d~vviV~~~~~~s~~---~~~~~~~~l~~-~~~~i~gvVlN~ 343 (386)
....+.|+|||+-... ..+... ....+|.+++|...+..... .+....+.+.. ...+ +-+|+|+
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK 154 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSF-MILIFTR 154 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGG-EEEEEEC
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccce-EEEEEeC
Confidence 3457889999863211 011111 11135888888875443222 22223333322 2223 5588899
Q ss_pred CcCCCCCce--ecccCCChHHHHHHHhCCCeE
Q 016622 344 CHFDADGKR--YYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 344 ~~~~~~~~~--~~~~~~~~~~~i~~~~g~pvl 373 (386)
++....... +.......++++.+.+|..+.
T Consensus 155 ~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 155 KDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC 186 (239)
T ss_dssp GGGC------------CHHHHHHHHHHSSSEE
T ss_pred CccCCcccHHHHHHhchHHHHHHHHHcCCEEE
Confidence 886432111 100111256778888887654
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.50 E-value=0.017 Score=49.83 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=32.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+.++ |..|+||||++..++..+...|.+++.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 356666 8899999999999999999989999998764
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.50 E-value=0.013 Score=51.19 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=34.8
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~ 213 (386)
.+++|.+. |..|+||||++..|+..+. ..|.++..+|.|..
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34677777 8899999999999999998 78999999987653
No 196
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.50 E-value=0.093 Score=44.05 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.||++...
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 136 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKE 136 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCccc
Confidence 34778999998642211111222446799999988655 356666665555433 3444 558899998643
No 197
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.50 E-value=0.02 Score=56.13 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCCCCh---------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~ 346 (386)
....+.|+|||+-... .......+..+|.+++|+.....--..-....+++++.+.+++ +|.||++.
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D~ 122 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAEN 122 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCS
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCC
Confidence 3446788999863211 0112223456788888887643211111344556666667755 78899874
No 198
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.49 E-value=0.29 Score=41.07 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l-~~---~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.++|+|+...........+..+|.+++|..... .++..+...+..+ +. .+.+ +-+|.|+++...
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 131 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLT 131 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCccc
Confidence 35678999998533221222222456799999887654 4566665555443 32 2455 458899998643
No 199
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.47 E-value=0.076 Score=54.15 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|||+-..-.......+..+|.+++|+.....-...+...++.++..+++++ +++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiI-VViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFV-VAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEE-EEecccccc
Confidence 3469999999632211111122345799999988776333455666677777888855 888999864
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.44 E-value=0.017 Score=54.64 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=33.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+.+ .+.+|+||||++.++|..++..|.+|+++.+...
T Consensus 48 LiiI-aG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 48 LVII-GARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp EEEE-EECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred EEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5555 5999999999999999999999999999998764
No 201
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.43 E-value=0.056 Score=45.98 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+ ...+..++.. +.+ +-+|.|+++.......
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-- 145 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-- 145 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT--
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC--
Confidence 35667999998632211122222445789998877654 345554 3444455443 344 4588899986532111
Q ss_pred ccCCChHHHHHHHhCCC-eE
Q 016622 355 PFGRGSGSQVVQQFGIP-HL 373 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~p-vl 373 (386)
........++++.++.+ ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 3reg_A 146 DVTKQEGDDLCQKLGCVAYI 165 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEE
T ss_pred cccHHHHHHHHHhcCCCEEE
Confidence 11224567788888877 44
No 202
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.43 E-value=0.041 Score=47.29 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.......
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v--- 148 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREV--- 148 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCS---
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccc---
Confidence 4678999998621100011112445789999887654 345555555554433 2444 5588999986432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......++++..+++++.
T Consensus 149 -~~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 149 -TFLEASRFAQENELMFLE 166 (200)
T ss_dssp -CHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHHHHHHHcCCEEEE
Confidence 112455667777776654
No 203
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.41 E-value=0.23 Score=42.17 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNA---- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCC----
Confidence 45789999998642211111122446799999887654 4566666665554332 444 5588999986432
Q ss_pred cccCCChHHHHHHHhCC
Q 016622 354 YPFGRGSGSQVVQQFGI 370 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~ 370 (386)
...+++.+.++.
T Consensus 146 -----~~~~~i~~~~~~ 157 (192)
T 2b6h_A 146 -----MPVSELTDKLGL 157 (192)
T ss_dssp -----CCHHHHHHHTTG
T ss_pred -----CCHHHHHHHhCc
Confidence 224666666654
No 204
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.41 E-value=0.13 Score=43.86 Aligned_cols=68 Identities=13% Similarity=-0.010 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCChHHHh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc-----CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK-----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~---~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~-----~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+........ ...+..+|.+++|...............+++.+ .+.+ +-+|.||++..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccC
Confidence 56789999998643211111 122446799999988776433333443344332 2444 45888998853
No 205
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.37 E-value=0.021 Score=54.46 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=33.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.|+ |-.|+||||++.+++..++..|.+|++||...
T Consensus 62 ~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 567776 67999999999999999999999999999874
No 206
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.37 E-value=0.064 Score=45.44 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=26.1
Q ss_pred CeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 306 TAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 306 d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
|.+++|...... +..+ ....+++...+.+++ +|+|+++...
T Consensus 107 ~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~p~i-~v~nK~Dl~~ 148 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDD-VQMYEFLKYYGIPVI-VIATKADKIP 148 (195)
T ss_dssp EEEEEEEETTSCCCHHH-HHHHHHHHHTTCCEE-EEEECGGGSC
T ss_pred CEEEEEEECCCCCCHHH-HHHHHHHHHcCCCEE-EEEECcccCC
Confidence 778888775542 3322 345566666677755 8889988643
No 207
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.37 E-value=0.01 Score=51.32 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.6
Q ss_pred ccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 169 ~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+..++++|+++ |-.|+||||++..|+..+ | ..++|.|..
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 44566788887 899999999999999887 4 346777753
No 208
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.37 E-value=0.014 Score=57.39 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=33.8
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+.+.++.+|+||||++.++|..++.+|.+|+++.+....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 444459999999999999999999889999999988644
No 209
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.36 E-value=0.11 Score=45.18 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHH-HHHHHHHHHcC--CCCeEEEEEcCCcCCCCCc---
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFDADGK--- 351 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~-~~~~~~~l~~~--~~~i~gvVlN~~~~~~~~~--- 351 (386)
..+.+.|+|+++......+....+..+|.+++|..... .++.. ....+..+.+. +.+ +-+|.|+++......
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~ 151 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLM 151 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhh
Confidence 45778999998632211122222445799999887654 45555 45555656543 444 458889998643100
Q ss_pred -----eecccCCChHHHHHHHhCC-CeEE
Q 016622 352 -----RYYPFGRGSGSQVVQQFGI-PHLF 374 (386)
Q Consensus 352 -----~~~~~~~~~~~~i~~~~g~-pvl~ 374 (386)
............+++.+++ +++.
T Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 152 ELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred hhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 0001122356778888887 5543
No 210
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.32 E-value=0.28 Score=48.52 Aligned_cols=83 Identities=8% Similarity=0.033 Sum_probs=50.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
+.+.+.|+|||+.-.........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.||++....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~---- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA---- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC----
Confidence 46789999998643222222223456799999987654 456666655554433 2444 4588899986431
Q ss_pred cccCCChHHHHHHHhCCC
Q 016622 354 YPFGRGSGSQVVQQFGIP 371 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~p 371 (386)
...+++.+.++.+
T Consensus 439 -----~~~~~~~~~~~~~ 451 (497)
T 3lvq_E 439 -----MKPHEIQEKLGLT 451 (497)
T ss_dssp -----CCHHHHHHHTTCT
T ss_pred -----CCHHHHHHHhchh
Confidence 2345666666644
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.32 E-value=0.013 Score=49.63 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~ 210 (386)
+.+.++ |..|+||||++..++..+. ..|.++..+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 467776 8999999999999999998 78888877654
No 212
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.28 E-value=0.22 Score=43.64 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceec
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
..+.+-|+||++.-....+.-.-...++.+++|...+ ..++..+...+..+.+. +++ +-+|.|+++......
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~--- 135 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQ--- 135 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCC---
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCc---
Confidence 4567889999864322222222244578888876544 45677777666666442 333 558889988643221
Q ss_pred ccCCChHHHHHHHhCCCeEE
Q 016622 355 PFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....++++++.+|++++.
T Consensus 136 -V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 136 -VSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp -SCHHHHHHHHHHHTCEEEE
T ss_pred -ccHHHHhhHHHHhCCeeEE
Confidence 1224567888888887653
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.26 E-value=0.025 Score=48.15 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+|+++ |-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56776 88999999999999999988898876554
No 214
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.16 Score=44.32 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCC-hHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~-~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+.++++|+++..+ ...+.......+|.+++|..- +..++..+......+.+. +.++ -+|.||++.......
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL~~~r~v- 163 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDLVRCREV- 163 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE-EEEEECTTCGGGCCS-
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEChHHhcCceE-
Confidence 45678889874322 111111112235777777554 445667666665555442 4554 488899986432111
Q ss_pred cccCCChHHHHHHHhCCCeE
Q 016622 354 YPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl 373 (386)
.....+.+++.++++++
T Consensus 164 ---~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 164 ---SVSEGRACAVVFDCKFI 180 (211)
T ss_dssp ---CHHHHHHHHHHHTCEEE
T ss_pred ---eHHHHHHHHHHcCCEEE
Confidence 11234456667776654
No 215
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.23 E-value=0.038 Score=60.25 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+. ......+..+|.+++|+.........+.+.+..+...+++.+-+++||++..
T Consensus 357 ~~~kI~IIDTPG-HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCC-HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999985 3322 1222234457999999887664444556666677777888666889999864
No 216
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.23 E-value=0.49 Score=39.51 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCCh--------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCC
Q 016622 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~ 350 (386)
..+.+.|+|||+.... ..........+|.+++|..... .......+..+.+.+.+++ +|.|+++.....
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~ 128 (188)
T 2wjg_A 52 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLL-LALNKMDLAKSL 128 (188)
T ss_dssp TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEE-EEEECHHHHHHT
T ss_pred CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEE-EEEEhhhccccc
Confidence 3467889999864321 1111111123688888877553 4555566666666677755 788998853211
Q ss_pred ceecccCCChHHHHHHHhCCCeEE
Q 016622 351 KRYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 351 ~~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.. ....+++++.++.+++.
T Consensus 129 ~~-----~~~~~~~~~~~~~~~~~ 147 (188)
T 2wjg_A 129 GI-----EIDVDKLEKILGVKVVP 147 (188)
T ss_dssp TC-----CCCHHHHHHHHTSCEEE
T ss_pred cc-----hHHHHHHHHHhCCCeEE
Confidence 10 13467888888877653
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.23 E-value=0.02 Score=50.15 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
..+|+|+ |.+|+||||+..+|+..+... +++..|+.|+.
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 3577777 779999999999999887655 78999999875
No 218
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.15 E-value=0.076 Score=55.22 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCCCh----HHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~----~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+++.|+|||+ ..+ .......+..+|.+++|+.++.. +..+.....+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999985 322 12222234467999999887543 334443333456656666 55888998854
No 219
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.12 E-value=0.11 Score=44.43 Aligned_cols=68 Identities=7% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
..+++.++|||+...........+..+|.+++|..... .++..+...+..+.+ .+.++ -+|.||++..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~ 139 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKIDRP 139 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECTTST
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECCCcc
Confidence 34678999998632211111122345799999887654 456666665555433 35554 5888999864
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.10 E-value=0.016 Score=49.27 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=30.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.|+ |-.|+||||++..|+..+...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 466666 8899999999999999998888666667654
No 221
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.07 E-value=0.12 Score=43.82 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc------CCCCeEEEEEcCCcCCCCCc
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGK 351 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l~~------~~~~i~gvVlN~~~~~~~~~ 351 (386)
..+.+.|+|+|+......+ ...+..+|.+++|...+ ..++..+...+..+.+ .+.++ -+|.|+++......
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl~~~~~ 144 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA-LLLGNKLDMAQYRQ 144 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECGGGGGGCS
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE-EEEEECcchhhcCc
Confidence 3567889999863211111 11244578888887765 3466666665555543 35554 48899998643211
Q ss_pred eecccCCChHHHHHHHhCCCeEE
Q 016622 352 RYYPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 352 ~~~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.......++++.++++++.
T Consensus 145 ----v~~~~~~~~~~~~~~~~~e 163 (187)
T 3c5c_A 145 ----VTKAEGVALAGRFGCLFFE 163 (187)
T ss_dssp ----SCHHHHHHHHHHHTCEEEE
T ss_pred ----cCHHHHHHHHHHcCCcEEE
Confidence 1113467788888876654
No 222
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.051 Score=47.17 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAY 196 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~ 196 (386)
..|+|+ |..|+||||+...|..
T Consensus 13 ~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHhc
Confidence 467777 8999999999877653
No 223
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.02 E-value=0.048 Score=45.65 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+.+. +.++ -+|.|+++..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 122 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 122 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCE-EEEeEccccc
Confidence 34678899998532211111122345789998888654 4555554 345555443 5554 4888998854
No 224
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.00 E-value=0.065 Score=46.23 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+. ..+..+.+. +.++ -+|.|+++...
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 148 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRD 148 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECHHHHT
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhhcc
Confidence 45677899998632211122222446799999887654 4555554 455555543 5554 48889988543
No 225
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.00 E-value=0.015 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=26.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++.|.++ |-.|+||||++..||..+ |. -++|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~--~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KR--ILYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 35577777 779999999999999877 44 3566664
No 226
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.00 E-value=0.18 Score=42.05 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 132 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQP 132 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCC
Confidence 4678899998642211111122345688888887643 456666666555543 2344 55889999864
No 227
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.98 E-value=0.049 Score=54.14 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=46.1
Q ss_pred CCCcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+. ......+..+|.+++|+...........+.+..++..++++ -+++|+++..
T Consensus 71 ~~~~i~iiDtPG-h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 71 ENYRITLVDAPG-HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNA 138 (482)
T ss_dssp TTEEEEECCCSS-HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSS
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence 356899999985 3221 22223345679999999876644445666667777888888 6888999864
No 228
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.98 E-value=0.035 Score=55.39 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..........+..+|.+++|+..+......+...+..+...++++ -+++|+++..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPi-IVviNKiDl~ 116 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPV-VVAVNKIDKP 116 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCE-EEEEECSSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceE-EEEEEecccc
Confidence 3456789999863221112222244578999998776544444556666777778884 5888999864
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.98 E-value=0.034 Score=47.52 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|+++ |-.|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 56776 888999999999999999999999976543
No 230
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.97 E-value=0.05 Score=47.22 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc---CCCCeEEEEEcCCcCCC
Q 016622 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK---LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~---~~~~i~gvVlN~~~~~~ 348 (386)
+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.. .+.++ -+|.|+++...
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI-VVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCE-EEEEECTTCC-
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCcc
Confidence 6799999986321111111224457888888876543 44555544444433 24554 48889998643
No 231
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.96 E-value=0.058 Score=45.04 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCCCCce--
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDADGKR-- 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~-- 352 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+++. +.++ -+|.|+++.......
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~ 132 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKLDLRDDKQFFI 132 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHHTCHHHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhhhcCccccc
Confidence 34567799998643221222222445799999988754 4555655 455555542 4554 488899885432110
Q ss_pred ----ecccCCChHHHHHHHhCC-CeE
Q 016622 353 ----YYPFGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 353 ----~~~~~~~~~~~i~~~~g~-pvl 373 (386)
..........++++.++. +++
T Consensus 133 ~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 133 DHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp HC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 000111245677777775 443
No 232
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.94 E-value=0.068 Score=51.81 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCChH-HHhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 281 LDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 281 yD~VIIDtpp~~~~~-~~~~~~~~~~d~vviV~~~~~~s-~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
+.+.|+|||+ ..+. ......+..+|.+++|+...... ...+.+.+..++..+.+.+-+++||++..
T Consensus 83 ~~i~iiDtPG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 83 RRVSFIDAPG-HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEEECSS-HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cEEEEEECCC-hHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 5789999985 3221 12222234579999999887532 34555555666666766566889999864
No 233
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.94 E-value=0.066 Score=53.84 Aligned_cols=67 Identities=13% Similarity=0.003 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--CCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~--~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+.-.........+..+|.+++|...... ......+..+.+.+ .+++ +|.||++...
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~~ 164 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVI-VVMNKIDENP 164 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEE-EEECCTTTCT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEE-EEEECCCccc
Confidence 468899999997322111111123357888888876443 45555666665543 6654 8999998643
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.92 E-value=0.35 Score=39.81 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCCChH------H--HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCCCCc
Q 016622 280 ELDYLVIDMPPGTGDI------Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGK 351 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~------~--~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~~~~ 351 (386)
.+.+.++|||+..... . ........+|.+++|...... ......+..+.+.+.+++ +|.|+++......
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~ 125 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLL-LALNKMDLAKSLG 125 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEE-EEEECHHHHHHTT
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEE-EEEEchHhccccC
Confidence 4568899998633210 1 111111257888888887653 333444555555567654 8889988532111
Q ss_pred eecccCCChHHHHHHHhCCCeE
Q 016622 352 RYYPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 352 ~~~~~~~~~~~~i~~~~g~pvl 373 (386)
. . ...+++++.++.+++
T Consensus 126 ~----~-~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 126 I----E-IDVDKLEKILGVKVV 142 (165)
T ss_dssp C----C-CCHHHHHHHHTSCEE
T ss_pred h----h-hHHHHHHHHhCCCEE
Confidence 0 1 136788888887764
No 235
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.92 E-value=0.029 Score=56.70 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCh-----------HHHhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 282 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 282 D~VIIDtpp~~~~-----------~~~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.++|||||+-... .......+..+|.+++|+.+... ........++.+.+.+.+ +-+|+||++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCcc
Confidence 5899999964321 01111223457999999988663 334556667777766666 45888998864
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.91 E-value=0.034 Score=51.18 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=33.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~ 212 (386)
.+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 36 ~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 467776 999999999999999999865 88999998875
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.88 E-value=0.028 Score=46.46 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=32.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+.++ |..|+||||++..++..+...|+++..++..
T Consensus 37 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 467776 8899999999999999998889889888764
No 238
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.88 E-value=0.037 Score=48.61 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=33.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+.++ |..|+||||++..++..+...|.++..++++.
T Consensus 53 ~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 466666 88999999999999999999999999999854
No 239
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.85 E-value=0.18 Score=42.51 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 137 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPD 137 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcC
Confidence 35678999998632211111112345788999887654 3566666555444332 344 558899998643
No 240
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.82 E-value=0.019 Score=48.09 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|+++|.++ |-.|+||||++..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 45678887 889999999999998876 44 4677763
No 241
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.81 E-value=0.027 Score=56.95 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=35.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+|.++ |..|+||||++..|+..|..+|+++.++|.|.
T Consensus 371 ~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 34577776 88999999999999999999999999999885
No 242
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.79 E-value=0.19 Score=44.06 Aligned_cols=69 Identities=9% Similarity=-0.035 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCC----hH----HHhhhh-hcCCCeEEEEeCCCcc---hHHHHHHHHHHHHcC--CCCeEEEEEcCC
Q 016622 279 GELDYLVIDMPPGTG----DI----QLTLCQ-VVPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 344 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~----~~----~~~~~~-~~~~d~vviV~~~~~~---s~~~~~~~~~~l~~~--~~~i~gvVlN~~ 344 (386)
..+.+.|+|||+... +. ...... ...+|.+++|...... ........+..+... +.++ -+|+|++
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi-ilv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI-VIGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE-EEEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE-EEEEeCc
Confidence 346789999986521 10 011111 3345788888776542 223334555666554 5554 5888999
Q ss_pred cCCC
Q 016622 345 HFDA 348 (386)
Q Consensus 345 ~~~~ 348 (386)
+...
T Consensus 153 Dl~~ 156 (228)
T 2qu8_A 153 DKCN 156 (228)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 8643
No 243
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.79 E-value=0.028 Score=56.55 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|||+--.........+..+|.+++|+..+..........+..+...+.++ -+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi-IVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI-VLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE-EECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEeccccc
Confidence 345788999863221112222234479999999887766667778888888888885 4888999864
No 244
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.77 E-value=0.041 Score=47.68 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+++|+|+ |-.|+||||++..|+..|...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 3577777 88899999999999999998899985553
No 245
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.032 Score=49.46 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~~ 213 (386)
.+.+..+.+|+|||+++.++|...+ +.|.+|+++.++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 3444459999999999999998754 56889999998753
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.69 E-value=0.05 Score=47.31 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=33.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+|+|. |..|+||||++..|+..+...|.++..|..|.
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3588887 89999999999999999986677788888774
No 247
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=94.68 E-value=0.026 Score=54.96 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=41.0
Q ss_pred CCceEEEEEeC---cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCccCCCc
Q 016622 171 KISNIVAVSSC---KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (386)
Q Consensus 171 ~~~kvI~v~s~---kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~sl~~~lg~~ 224 (386)
..+|.|.|++- .-|+||||++..|+.+|.+.|+++.+. ++.||+.-.||..
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 94 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLGLK 94 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHHSC
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCCcc
Confidence 34678877764 559999999999999999999999765 6788876666554
No 248
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.67 E-value=0.029 Score=52.22 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCChH------HHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCcC
Q 016622 279 GELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~-----~~~i~gvVlN~~~~ 346 (386)
+.+.+.|+|+|+. ... ......+..+|.+++|..... .+..++....+.+.+. +.+ +-+|.||++.
T Consensus 50 ~~~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 50 GNMTLNLWDCGGQ-DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp TTEEEEEEEECCS-HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CceEEEEEECCCc-HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 4567899999853 211 111112345799999987654 4556665544444332 444 5588899986
Q ss_pred CCCCcee--cccCCChHHHHHHHhC
Q 016622 347 DADGKRY--YPFGRGSGSQVVQQFG 369 (386)
Q Consensus 347 ~~~~~~~--~~~~~~~~~~i~~~~g 369 (386)
.....+. +.......+++++.+|
T Consensus 128 ~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 128 VQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcC
Confidence 4311110 0011134566777777
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.63 E-value=0.024 Score=47.73 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|.++ |-.|+||||++..||..+ |.....++.|.
T Consensus 4 ~~i~l~-G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILN-GGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 455555 999999999999988766 45566667763
No 250
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.61 E-value=0.043 Score=54.03 Aligned_cols=39 Identities=28% Similarity=0.522 Sum_probs=33.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~ 213 (386)
..+.++ |.+|+||||++.++|..++. .|.+|+++++...
T Consensus 204 ~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 455555 99999999999999999986 6899999998753
No 251
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.59 E-value=0.2 Score=46.93 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=46.5
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHH-HcC---CCCeEEEEEcCCcCCCCCcee
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL---KVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~-~~s~~~~~~~~~~l-~~~---~~~i~gvVlN~~~~~~~~~~~ 353 (386)
..+.+.|+|||+...........+..+|.+++|.... ..++..+...+..+ ... +.+ +-+|.||++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~---- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA---- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc----
Confidence 4578999999963321111112234568888888765 34566655544433 332 444 4588899986432
Q ss_pred cccCCChHHHHHHHhCCC
Q 016622 354 YPFGRGSGSQVVQQFGIP 371 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~p 371 (386)
...+++.+.++..
T Consensus 282 -----~~~~~i~~~~~~~ 294 (329)
T 3o47_A 282 -----MNAAEITDKLGLH 294 (329)
T ss_dssp -----CCHHHHHHHHTCT
T ss_pred -----cCHHHHHHHhchh
Confidence 2356677777654
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.54 E-value=0.049 Score=47.10 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+++|+|+ |-.|+||||++..|+..+...+.++.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4577777 88899999999999999988888885544
No 253
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.54 E-value=0.06 Score=46.94 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.+. +.++ -+|.|+++...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 133 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCcccc
Confidence 45678999998632111111112345788888887655 3455555555555442 4554 48889998643
No 254
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.54 E-value=0.13 Score=49.80 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCChHH-HhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 281 LDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 281 yD~VIIDtpp~~~~~~-~~~~~~~~~d~vviV~~~~~~s-~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
+.+.|+|||+ ..+.. .....+..+|.+++|+...... ...+.+.+..++..+.+.+-+++||++...
T Consensus 81 ~~i~iiDtPG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPG-HETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSS-HHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCC-HHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 6799999985 32211 1122233469999999887532 344555666667777765668999998643
No 255
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.50 E-value=0.14 Score=44.23 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+......+....+..+|.+++|..... .++..+ ...+..+++. +.+ +-+|.|+++..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 35678999998632111111122345788888887654 345555 3444555442 344 55888999864
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.50 E-value=0.022 Score=47.95 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=26.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|++|+++ |..|+||||++..||..+ | ..++|.|.
T Consensus 4 m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 4 AKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp -CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 4567776 899999999999999876 3 35677764
No 257
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.48 E-value=0.039 Score=47.34 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=30.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+++.++ |-.|+||||++..++..+..+|++|+++-..
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 355555 8889999999999999999999999998543
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.46 E-value=0.038 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|.+. |-.|+||||++..|+.. ......++.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3456665 99999999999988872 23466777764
No 259
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.45 E-value=0.042 Score=53.97 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~ 212 (386)
..+.|+ +.+|+||||++.++|..++. .|.+|+++++..
T Consensus 201 ~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 201 SLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 355554 99999999999999999996 589999999875
No 260
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.43 E-value=0.044 Score=54.99 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=34.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.++.+|.++ |..|+||||++..||..|...+.++.+++.|-
T Consensus 33 ~~~~lIvlv-GlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMV-GLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 344455555 99999999999999999998899999999885
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.43 E-value=0.016 Score=49.23 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=26.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|+++ |..|+||||++..||..+ |.. ++|.|.
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 2 APKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 3467777 899999999999998876 443 678774
No 262
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.32 E-value=0.11 Score=51.08 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCC---------CChH-H-HhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPG---------TGDI-Q-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~---------~~~~-~-~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
...+.|+|||+- .... . .....+..+|.+++|+...........+...++.+.+.+++ +|+||++...
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~ 320 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVD 320 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSC
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcCC
Confidence 447889999852 1111 1 11122345788999888766444555667777777776654 8889998654
No 263
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.32 E-value=0.17 Score=43.59 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCCCCce--
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDADGKR-- 352 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~~~~~-- 352 (386)
..+.+.|+|+|+.-....+....+..+|.+++|..... .++..+. ..+..+... +.++ -+|.|+++.......
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~ 133 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLRDDKGYLA 133 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHHTCHHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeCHHhhhCccccc
Confidence 45678999998643211121222445799999887654 4555554 455555543 5554 488999885332100
Q ss_pred --ecccCCChHHHHHHHhCC-CeE
Q 016622 353 --YYPFGRGSGSQVVQQFGI-PHL 373 (386)
Q Consensus 353 --~~~~~~~~~~~i~~~~g~-pvl 373 (386)
..........++++.++. +++
T Consensus 134 ~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 134 DHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp TCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred cccCCCCHHHHHHHHHHcCCceEE
Confidence 000011345667777775 443
No 264
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.29 E-value=0.052 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+.|+|. |-.|+||||++..|+..+...| +|...+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 466666 8899999999999999997777 665443
No 265
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.26 E-value=0.2 Score=42.03 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~-~~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+ ...+..+++. +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 45678999998632111111122345788888877654 455555 3444445442 444 45889999864
No 266
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.24 E-value=0.0094 Score=60.91 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s-------~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..-.......+..+|.+++|+...... .......+..+...+++.+-+|+||++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 4578999999853211111112233468888887765421 23456666777788887566889999854
No 267
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.23 E-value=0.046 Score=55.97 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=36.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
.+++|.|+ |-.|+||||++..|+..|..+|.++..+|.|..+.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 34567776 89999999999999999999999999998876543
No 268
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.16 E-value=0.1 Score=55.45 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..-.......+..+|.+++|+......-......+..+...+++++ +|+||++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCcc
Confidence 46789999999643322222333556799999988776533344555566666677765 788998854
No 269
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.12 E-value=0.063 Score=50.01 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=33.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D 211 (386)
.+.+.++ |..|+|||+++..+|..+. +.|++|..+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3566666 8899999999999999999 999999998764
No 270
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.10 E-value=0.058 Score=50.21 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=33.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La--~~G~rVllID~D~~~ 214 (386)
+.+|+++ |..|+||||++..|+..+. -.+.+|.++++|-..
T Consensus 80 g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 80 PYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4588888 8899999999999998886 345579999988543
No 271
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.06 E-value=0.047 Score=55.43 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.7
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G-~rVllID~D~ 212 (386)
.+.+|.|+ |-.|+||||++..|+..|..+| +++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 44577777 8899999999999999999888 8999999875
No 272
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.05 E-value=0.44 Score=40.46 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCCC-hHHHhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~-~~~~~~~~~~~~d~vviV~~~-~~~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+.++++|++...+ ...+.......+|.+++|..- +..++..+......+.+ .+.++ -+|.|+++......
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl~~~r~-- 131 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDLVRXRE-- 131 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECTTCGGGCC--
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeE-EEEEechhhhcccc--
Confidence 34567888875322 111111112235777776554 44566666655554443 24554 48889988543111
Q ss_pred cccCCChHHHHHHHhCCCeE
Q 016622 354 YPFGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl 373 (386)
........++..++.+++
T Consensus 132 --v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 132 --VSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp --SCHHHHHHHHHHTTCEEE
T ss_pred --ccHHHHHHHHHHhCCceE
Confidence 111223455566676554
No 273
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.04 E-value=0.03 Score=55.92 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=33.0
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~~ 213 (386)
+.+..+.+|+||||++.++|..++.. |.+|+++++...
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 44445999999999999999999986 999999999763
No 274
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.02 E-value=0.038 Score=51.84 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~------G~rVllID~D~~ 213 (386)
.++.|+ |..|+||||++.++|..++.. |.+|++||++..
T Consensus 108 ~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 108 TMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 466666 889999999999999987655 789999999853
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.01 E-value=0.068 Score=50.14 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=33.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~--~G~rVllID~D~~~ 214 (386)
+.+|+++ |..|+||||++..|+..+.. .+.+|.++..|...
T Consensus 92 p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4578887 88999999999999988864 35689999998643
No 276
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.00 E-value=0.03 Score=46.87 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|+++|+++ |..|+||||++..||..+ | ..++|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~--~~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---C--CCEEeccH
Confidence 34578887 889999999998888765 3 35677763
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.96 E-value=0.029 Score=48.21 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=26.9
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 3445688887 88999999999888764 54 4678874
No 278
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.85 E-value=0.13 Score=44.71 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+. ..++.+.+. +.++ -+|.|+++...
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 152 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI-IVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECGGGGS
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhhc
Confidence 4678899998632211111112335688888877654 4555554 344445432 4554 58889998654
No 279
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.82 E-value=0.048 Score=51.14 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
+|.++|.++ |-.|+||||++..||..+ ...+||+|-.
T Consensus 3 ~m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 455666666 889999999999998765 3678898854
No 280
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.76 E-value=0.062 Score=50.86 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.++.|+ |..|+||||++.++|...+. .|.+|++||++.
T Consensus 123 ~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455555 99999999999999998654 578999999975
No 281
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.76 E-value=0.048 Score=47.12 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=26.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|+.+|+++ |..|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 34678888 8899999999988875 4654 568875
No 282
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.75 E-value=0.035 Score=47.95 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=24.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|+++ |..|+||||++..||. + | +-++|+|.
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 478888 8899999999988887 4 5 45567664
No 283
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.73 E-value=0.41 Score=41.07 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCCChHH-HhhhhhcCCCeEEEEeCCCcc--hHHHHHHHH-HHHHc-----CCCCeEEEEEcCCcCCC
Q 016622 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKL--AFIDVAKGV-RMFSK-----LKVPCIAVVENMCHFDA 348 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~-~~~~~~~~~d~vviV~~~~~~--s~~~~~~~~-~~l~~-----~~~~i~gvVlN~~~~~~ 348 (386)
.+.+.|+|||+...... +.......+|.+++|...... +.......+ +.+.. .+.+ +-+|.|+++...
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAM 129 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTT
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCC
Confidence 57899999985322111 111113456888999887652 222332222 22221 2344 558899998654
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.69 E-value=0.049 Score=46.78 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
++.|+++ |-.|+||||++..|+..+ .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 3577777 889999999999998877 4677776653
No 285
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.65 E-value=0.056 Score=45.78 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=26.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
|+++|+++ |..|+||||++..|+..+ | ...+|.|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 55677777 889999999999998876 4 3567775
No 286
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.63 E-value=0.094 Score=43.82 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH-------CCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~-------~G~rVllID~ 210 (386)
+.+.++ |..|+|||+++..++..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 356565 99999999999999999876 3555555554
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.62 E-value=0.076 Score=45.97 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=31.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+.+|+++ |..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4588888 77899999999999887742 68999998754
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.62 E-value=0.081 Score=48.23 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=29.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC----------CCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~----------G~rVllID~D~ 212 (386)
.+++++ |.+|+||||++..++..++.. +.+|++++...
T Consensus 31 ~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 31 TVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 477777 999999999999999977642 35788877653
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.55 E-value=0.058 Score=46.46 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.4
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
...+++|+|+ |..|+||||++..|+..+ |. ..+|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3445678777 889999999999988764 54 567776
No 290
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.54 E-value=0.088 Score=44.09 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|+++ |..|+||||++..|+..+ | ..++|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 4577777 899999999999998876 4 35678774
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.50 E-value=0.056 Score=49.93 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=31.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCC--CcEEEE-EcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G--~rVllI-D~D~~ 213 (386)
+.+|+|+ |..|+||||++..|+..+...| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3578887 8899999999999999998654 444444 88864
No 292
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.50 E-value=1 Score=37.72 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcCCCCCceec
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~----~~~i~gvVlN~~~~~~~~~~~~ 354 (386)
.+.+.|+|+++... .. .+..+|.+++|..... .++..+...+..+... +.++ -+|.|+++.......
T Consensus 66 ~~~l~i~Dt~G~~~-~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~-- 137 (184)
T 3ihw_A 66 SYLLLIRDEGGPPE-LQ----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM-VLVGTQDAISAANPR-- 137 (184)
T ss_dssp EEEEEEEECSSSCC-HH----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE-EEEEECTTCBTTBCC--
T ss_pred EEEEEEEECCCChh-hh----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccccccc--
Confidence 46678899985432 22 1334688888876554 4566666666666553 3454 488899886321111
Q ss_pred ccCCChHHHHHHHhC-CCeEE
Q 016622 355 PFGRGSGSQVVQQFG-IPHLF 374 (386)
Q Consensus 355 ~~~~~~~~~i~~~~g-~pvl~ 374 (386)
........++++.++ .+++.
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 138 VIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp CSCHHHHHHHHHHTTTCEEEE
T ss_pred ccCHHHHHHHHHHcCCCeEEE
Confidence 112234667778876 66543
No 293
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.47 E-value=0.063 Score=47.40 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.+++++ |..|+||||++..+|...+. .+.+|++++.+.
T Consensus 25 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 477777 89999999999999986443 367999999875
No 294
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.46 E-value=0.054 Score=47.16 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHH-----HCC-CcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La-----~~G-~rVllID~D 211 (386)
|+.++.|+ |..|+|||+.|..++..++ +.| +++.+..+|
T Consensus 4 ~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 44566666 9999999999998877765 567 666556544
No 295
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.43 E-value=0.023 Score=49.36 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=30.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+|+|. |-.|+||||++..|+..|...|.+|.++.-
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 788999999999999999888888887753
No 296
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.39 E-value=0.14 Score=50.10 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCCCCCh-HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+ ..+ .......+..+|.+++|+...........+.+..+...+.+.+-+|+||++..
T Consensus 102 ~~~~~~iiDtpG-h~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPG-HEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCC-SGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999985 433 22222335568999999988765445566666777777887667889999864
No 297
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.38 E-value=0.071 Score=50.33 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
++|+|+ |-.|+||||+|..||..+ .+.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 466666 889999999999998876 2789999965
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.37 E-value=0.062 Score=45.63 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++.|.++ |-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 3466665 889999999999999877 544 45655
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.35 E-value=0.068 Score=48.22 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=25.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|+|+ |..|+||||+|..||..+ |. .+++.|-
T Consensus 2 ~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 466665 899999999999998866 33 4577775
No 300
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.34 E-value=0.072 Score=49.83 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=31.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~--G~rVllID~D~ 212 (386)
++.| .+-.|+||||++.+++..+++. |.+|++||+.-
T Consensus 30 iteI-~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLIL-AGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEE-EESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 4444 4889999999999999999876 88999999864
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.33 E-value=0.053 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++.|+++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 3577776 899999999999999887 443 456653
No 302
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.25 E-value=1.1 Score=36.80 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCeEEEEEcCCcCCCCCce
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGKR 352 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~------~~~i~gvVlN~~~~~~~~~~ 352 (386)
.+.+.|+|+|+... . .. +..+|.+++|..... .++..+...++.+... +.+ +-+|.|+++......+
T Consensus 53 ~~~l~i~Dt~G~~~-~--~~--~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (178)
T 2iwr_A 53 THLVLIREEAGAPD-A--KF--SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR 126 (178)
T ss_dssp EEEEEEEECSSSCC-H--HH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC
T ss_pred EEEEEEEECCCCch-h--HH--HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC
Confidence 45688999986433 1 11 334688898887654 4566666644444332 344 5588999886321111
Q ss_pred ecccCCChHHHHHHHh-CCCeE
Q 016622 353 YYPFGRGSGSQVVQQF-GIPHL 373 (386)
Q Consensus 353 ~~~~~~~~~~~i~~~~-g~pvl 373 (386)
........++++.+ +.+++
T Consensus 127 --~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 127 --VVGDARARALXADMKRCSYY 146 (178)
T ss_dssp --CSCHHHHHHHHHHHSSEEEE
T ss_pred --cCCHHHHHHHHHhhcCCeEE
Confidence 01112345566665 45544
No 303
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.052 Score=47.01 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+.+|+++ |..|+||||++..|+..+. .+.+++.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34688888 7889999999887765431 5889999853
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.21 E-value=0.048 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|+++ |..|+||||++..||..+ | .-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 478887 888999999999998876 3 45677774
No 305
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=93.15 E-value=0.2 Score=49.24 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~~-------~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..-.......+..+|.+++|+........ ...+.+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999996332222233334568999999998765333 556666667777887666889999864
No 306
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.15 E-value=0.076 Score=45.88 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=27.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+|+++ |..|+||||++..|+..+ | .-+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 478888 889999999999888764 5 456888854
No 307
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.13 E-value=0.099 Score=45.63 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
|++-|+|= |--|+||||.+..|+..|. +|++|.+.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 55677777 7789999999999999996 588888763
No 308
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.09 E-value=0.068 Score=44.37 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|+++ |-.|+||||++..|+..+ |+. ++|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 466666 899999999999988776 443 577774
No 309
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.01 E-value=0.069 Score=53.32 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHH-C-CCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~-~-G~rVllID~D~ 212 (386)
.+.+|.++ |-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus 394 ~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34567776 88899999999999999986 5 47788999987
No 310
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.99 E-value=0.46 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=30.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.+..++ |--|+||||....++..+..+|++|+++-.
T Consensus 28 G~I~vit-G~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECIT-GSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3455555 778999999999999999999999999954
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.98 E-value=0.053 Score=46.31 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=26.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+++|+++ |..|+||||++..||..+ | ...+|.|
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 4577777 889999999999999877 3 4567765
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.83 E-value=0.093 Score=44.58 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|.++ |..|+||||++..||..+ .| .-++|+|-
T Consensus 11 ~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 11 INILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 467776 889999999999888753 24 56688773
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.79 E-value=0.068 Score=48.11 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
+++|.++ |..|+||||++..|+..+ +..+.++|.|..+.
T Consensus 32 ~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 32 PIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRS 70 (253)
T ss_dssp CEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHH
Confidence 3456665 899999999999998765 34567889986543
No 314
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.75 E-value=0.1 Score=43.50 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG 200 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~ 200 (386)
+.+.++ |..|+||||++..++..+..
T Consensus 44 ~~vll~-G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILL-GDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEE-SCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 355555 88999999999999999876
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.75 E-value=1.2 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCCChH---------HHhhhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHc-C-CCCeEEEEEcCCc
Q 016622 280 ELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 345 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~---------~~~~~~~~~~d~vviV~~~~~~---s~~~~~~~~~~l~~-~-~~~i~gvVlN~~~ 345 (386)
.+++.++|||+..... .........+|.+++|...+.. +.....+.+..+.. . +.++ -+|.|+++
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi-ilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF-LVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE-EEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE-EEEEECcc
Confidence 4578899998643210 1111112246888888885543 45555555555544 2 4554 48889988
Q ss_pred CC
Q 016622 346 FD 347 (386)
Q Consensus 346 ~~ 347 (386)
..
T Consensus 292 l~ 293 (357)
T 2e87_A 292 VA 293 (357)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.74 E-value=0.11 Score=44.71 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=27.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|+++ |..|+||||++..|+..+ | ..++|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 3577777 999999999999999877 5 35677765
No 317
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.73 E-value=0.15 Score=44.73 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=30.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+.|+|. |-.|+||||.+..|+..|...|++|.+..
T Consensus 7 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 466666 88999999999999999999999997664
No 318
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.66 E-value=0.14 Score=45.36 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La-~~G~rVllID~D~ 212 (386)
+.++++. |..|+||||+...++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3578887 8999999999999997655 6678888888764
No 319
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.66 E-value=0.11 Score=46.90 Aligned_cols=20 Identities=50% Similarity=0.604 Sum_probs=16.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLA 195 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA 195 (386)
.|++. |..|+||||+.-.|.
T Consensus 38 ~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEE-ECTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 56776 999999999987775
No 320
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.40 E-value=0.21 Score=47.14 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=47.3
Q ss_pred CcEEEEcCCCCC-------ChHHHhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCeEEEEEcCC
Q 016622 281 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (386)
Q Consensus 281 yD~VIIDtpp~~-------~~~~~~~~~~~~~d~vviV~~~~----~~s~~~~~~~~~~l~~~-----~~~i~gvVlN~~ 344 (386)
+.++|+|+|+-. +-....+..+..+|.+++|+... ..++.+.....+.+... +.+ .-+|+||+
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 578999998511 00111122233468889888875 35677777777777653 344 45889999
Q ss_pred cCCCCCceecccCCChHHHHHHHhC
Q 016622 345 HFDADGKRYYPFGRGSGSQVVQQFG 369 (386)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~~~g 369 (386)
+..... ...+++.+.++
T Consensus 285 Dl~~~~--------e~~~~l~~~l~ 301 (342)
T 1lnz_A 285 DMPEAA--------ENLEAFKEKLT 301 (342)
T ss_dssp TSTTHH--------HHHHHHHHHCC
T ss_pred cCCCCH--------HHHHHHHHHhh
Confidence 854210 13455666665
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.38 E-value=0.11 Score=44.68 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=26.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+++.|.++ |-.|+||||++..|+..+ |.. ++|+|
T Consensus 19 ~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp SCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 44577776 889999999999999877 554 46654
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.28 E-value=0.11 Score=43.92 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++|+++ |..|+||||++..|+..+ |. ..+|.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 466666 899999999999998776 44 457765
No 323
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.27 E-value=0.18 Score=43.65 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.9
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
|+|= |--|+||||.+..|+..|..+|++|.+..
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4454 77899999999999999999999998874
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.25 E-value=0.11 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+|+++ |-.|+||||++..||..| |.+ ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 4578887 889999999999998876 554 467764
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.25 E-value=0.16 Score=45.32 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-----CCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-----G~rVllID~D~ 212 (386)
+.+|+++ |..|+||||++..|+..+... ..++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 3589998 889999999999998877321 24678888874
No 326
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.21 E-value=0.36 Score=43.59 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=16.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLA 195 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA 195 (386)
.|++. |..|+||||+.-.|.
T Consensus 41 ~I~vv-G~~g~GKSSLin~l~ 60 (270)
T 1h65_A 41 TILVM-GKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEE-ESTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 67777 899999999987665
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.21 E-value=0.088 Score=43.55 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVll 207 (386)
+|+++ |..|+||||++..| .+.|..++-
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVIV 30 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEEE
Confidence 56666 99999999999988 556776543
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.14 E-value=0.12 Score=47.29 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=26.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+++|+|+ |..|+||||++..|+ . .|. -+||+|.
T Consensus 74 ~~~iI~I~-G~~GSGKSTva~~La-~---lg~--~~id~D~ 107 (281)
T 2f6r_A 74 GLYVLGLT-GISGSGKSSVAQRLK-N---LGA--YIIDSDH 107 (281)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHH-H---HTC--EEEEHHH
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHH-H---CCC--cEEehhH
Confidence 45688888 888999999999998 3 365 4588874
No 329
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.13 E-value=0.15 Score=45.16 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=33.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID~D~~ 213 (386)
++.|+|. |-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus 21 ~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 21 SMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4566666 88999999999999999998 9999988444553
No 330
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.12 E-value=0.12 Score=51.28 Aligned_cols=69 Identities=6% Similarity=-0.093 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCCCCChHH---------HhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~---------~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+. .+.. .....+..+|.+++|+..... +........++++......+-+|+||++...
T Consensus 279 ~g~~l~liDT~G~-~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 279 DKTMFRLTDTAGL-REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAA 357 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCT
T ss_pred CCeEEEEEECCCC-CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCC
Confidence 4567999999863 2211 111224457999999887653 2221222333333332334558889998644
No 331
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.08 E-value=0.1 Score=48.64 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHH------------HCC----CcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La------------~~G----~rVllID~D~~ 213 (386)
.++.|+ |..|+||||++.++|...+ +.| .+|++||++..
T Consensus 99 ~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 99 SVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 455555 8899999999999998743 245 79999998753
No 332
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.07 E-value=0.19 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=29.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCc-EEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 208 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~r-VllI 208 (386)
+.|+|. |-.|+||||++..|+..|...|++ |.+.
T Consensus 28 ~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 567766 888999999999999999999999 5554
No 333
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.04 E-value=0.12 Score=43.86 Aligned_cols=34 Identities=41% Similarity=0.451 Sum_probs=25.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++|+++ |..|+||||++..|+.. .+...+.+|.|
T Consensus 10 ~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 567776 89999999999888764 34445667665
No 334
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.98 E-value=0.39 Score=39.92 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++.......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v--- 131 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQV--- 131 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCS---
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcC---
Confidence 4678999998643211122222445789999888755 3556666666555442 344 4588999986432111
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++++++.
T Consensus 132 -~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 132 -SKERGEKLALDYGIKFME 149 (183)
T ss_dssp -CHHHHHHHHHHHTCEEEE
T ss_pred -CHHHHHHHHHHcCCeEEE
Confidence 113466777888876653
No 335
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=91.97 E-value=0.17 Score=45.23 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=40.1
Q ss_pred CceEEEEEeCc-CCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 016622 172 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (386)
Q Consensus 172 ~~kvI~v~s~k-GGvGKTTla~~LA~~La~~G~rVllID~D~~~~ 215 (386)
.+|-|.|+++- .|.||-.+|+.|+..|..+|++|..+..||+-+
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlN 66 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN 66 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCcee
Confidence 46889999887 899999999999999999999999999999754
No 336
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.96 E-value=0.11 Score=47.83 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+.+.+|-.|+||||++..|+..+ +.....||+|..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R 70 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK 70 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhH
Confidence 455566999999999999998755 2346778887544
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.96 E-value=2.2 Score=40.53 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~ 210 (386)
..+|+|+ |..|+||||+...|+..+... ..+++.++-
T Consensus 136 g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4578887 888999999999999988754 457777763
No 338
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.94 E-value=0.18 Score=46.80 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+.++ |..|+||||++..++..+...|.+++.++++
T Consensus 39 ~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 56666 8889999999999999999889999999875
No 339
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.94 E-value=0.23 Score=44.10 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=32.7
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.++++..++ |.-|.||||-+..++..+..+|++|+++..
T Consensus 17 ~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 355655555 888999999999999999999999999984
No 340
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.79 E-value=0.22 Score=43.70 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCC-cEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~-rVllI 208 (386)
+.|+|. |-.|+||||.+..|+..|...|+ .|.+.
T Consensus 4 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 467776 88899999999999999999998 66544
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.79 E-value=0.12 Score=43.45 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=24.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.++ |-.|+||||++..||..+ |. ..+|.|
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 456666 899999999999998876 43 445655
No 342
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.76 E-value=0.19 Score=44.53 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
+++.|+|. |-.|+||||++..|+..+.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34577776 88999999999999999988 8888654
No 343
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.55 E-value=0.22 Score=45.71 Aligned_cols=40 Identities=28% Similarity=0.207 Sum_probs=33.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
..+.++ |..|+||||+|..+|..+...+..+..+|+....
T Consensus 48 ~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 366776 8899999999999999998878889999986543
No 344
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.52 E-value=0.076 Score=49.77 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.2
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+++.+ .|.+|+||||++.++|.. .|.+|++++++
T Consensus 124 sviLI-~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMVIV-TGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEEE-ECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 35544 599999999999999987 67899999983
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.42 E-value=0.15 Score=43.37 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+++|+++ |-.|+||||++..||..+ |. ..+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 3577777 889999999999999877 44 356765
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.35 E-value=0.16 Score=44.90 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=26.5
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
..++.|.|. |..|+||||++..||..+ | ...+|+|
T Consensus 14 ~~~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 14 PKGVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCCCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 344567777 889999999999999887 3 3456664
No 347
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.33 E-value=0.071 Score=52.12 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCC---------ChHH--HhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGT---------GDIQ--LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~---------~~~~--~~~~~~~~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
...+.|+|||+-. .... .....+..+|.+++|...... +.++ .+.+..+...+.+++ +|+||++..
T Consensus 222 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~~~ii-iv~NK~Dl~ 299 (436)
T 2hjg_A 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVV-IVVNKWDAV 299 (436)
T ss_dssp TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEE-EEEECGGGS
T ss_pred CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEE-EEEECccCC
Confidence 3457888887521 1110 111223457888888877553 3333 355666666666644 888998864
Q ss_pred C
Q 016622 348 A 348 (386)
Q Consensus 348 ~ 348 (386)
.
T Consensus 300 ~ 300 (436)
T 2hjg_A 300 D 300 (436)
T ss_dssp C
T ss_pred C
Confidence 3
No 348
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.33 E-value=0.16 Score=44.41 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++.|.|. |..|+||||++..||..+ |. ..+|+|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 3467777 889999999999999877 43 456663
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.29 E-value=0.16 Score=42.74 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=24.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|+++ |-.|+||||++..||..+ |. ..+|+|
T Consensus 5 ~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 5 QAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 467776 889999999999998876 43 456665
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.23 E-value=0.17 Score=44.20 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=25.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+|+++ |..|+||||++..|+..+ | .-.+|.|
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 578888 889999999999988765 3 3456655
No 351
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.22 E-value=0.21 Score=56.72 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
+.++.|+ +.+|+||||++.++|...++.|.+|++||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 3466665 9999999999999999999999999999998643
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.14 E-value=0.21 Score=56.61 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=34.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
.+|.++ +..|+||||++.++|..+++.|.+|+++++...
T Consensus 733 ~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 733 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred ceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 456665 999999999999999999999999999998754
No 353
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.09 E-value=0.2 Score=44.49 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC----CCcEEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 209 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~----G~rVllID 209 (386)
+.|+|. |-.|+||||++..|+..|... |++|.+.-
T Consensus 26 ~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 466666 899999999999999999988 99997653
No 354
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.07 E-value=0.12 Score=42.17 Aligned_cols=36 Identities=17% Similarity=-0.006 Sum_probs=28.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
-|.++ |..|+|||++|..++....+.+...+ +++..
T Consensus 26 ~vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 26 AVWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp CEEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CEEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 35555 88999999999999887766677777 87753
No 355
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.01 E-value=0.73 Score=43.34 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=27.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
++|.|+ |-.|+||||++..||..+ ..-+||+|-.+
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKMQ 75 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSST
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEcccccc
Confidence 466665 889999999999888754 46789999653
No 356
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.38 E-value=0.042 Score=47.25 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+... +.+ +-+|.|+++...
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 34567789998633211111122334688888877543 3444444 344444443 444 448889988643
No 357
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.92 E-value=0.17 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|.+. |-.|+||||++..|+..+ . ....+|.|.
T Consensus 2 ~~~I~l~-G~~GsGKST~a~~L~~~~--~--~~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILTI-GCPGSGKSTWAREFIAKN--P--GFYNINRDD 36 (301)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHS--T--TEEEECHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhC--C--CcEEecccH
Confidence 3456665 999999999999888732 2 356777763
No 358
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.89 E-value=0.22 Score=47.04 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC--------CCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~--------G~rVllID~D 211 (386)
+.+.++ |.+|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 456666 999999999999999998765 7888888864
No 359
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.80 E-value=0.25 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=29.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
+.+.|+ |-+|+||||++..++..+...|++|+++
T Consensus 205 ~~~~I~-G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLT-GGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 355554 9999999999999999999999999988
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.79 E-value=0.22 Score=43.36 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=30.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
.++++. |..|+||||++..|+..+.. .+.++++++...
T Consensus 26 ~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 577777 89999999999999986654 356788888754
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.76 E-value=0.15 Score=44.48 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=24.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.|. |..|+||||++..||..+ |.. .+|+|
T Consensus 6 ~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 6 HNLILI-GAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 467776 888999999999999887 543 45553
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.71 E-value=0.37 Score=44.85 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-C-CcEEEEEcCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 213 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-G-~rVllID~D~~ 213 (386)
+.+|+|. |..|+||||++..|+..+... | .++.+|-.|..
T Consensus 90 g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4588887 899999999999999988743 4 57888887753
No 363
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.70 E-value=0.23 Score=45.73 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.+.++ |.+|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 466666 899999999999999988 778888876
No 364
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.63 E-value=0.35 Score=47.61 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCCCCC--hH------HHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTG--DI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~--~~------~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
+.+.+.|+|||+-.. +. ......+..+|.+++|+......-......++.+.. .+ +-+|+||++...
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~~ 344 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLVE 344 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSSC
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCCc
Confidence 566789999986321 00 011112345799999988765322333445555543 34 558889998643
No 365
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.45 E-value=0.23 Score=43.16 Aligned_cols=32 Identities=47% Similarity=0.595 Sum_probs=24.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+|+|+ |..|+||||++..|+. .|. -++|+|.
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 577777 8899999999988875 464 5678863
No 366
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.42 E-value=0.33 Score=44.44 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCC----cEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~----rVllID~D 211 (386)
...+.++ |..|+|||+++..+|..+...+. .++.+++.
T Consensus 67 ~~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3467776 88999999999999999987655 67777653
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.39 E-value=2.5 Score=39.89 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 209 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID 209 (386)
.+|+|+ |..|+||||+...|+..+... |.+++.++
T Consensus 124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 467777 899999999999999888754 66666554
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.39 E-value=0.11 Score=43.75 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVl 206 (386)
+++|.++ |-.|+||||++..|+..+ |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3467776 999999999999887655 55544
No 369
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.37 E-value=0.32 Score=41.39 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|.||++.......
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v--- 156 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVV--- 156 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCC---
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccC---
Confidence 4678999998643211111222445788999887654 4566677766666654 344 4588899986432211
Q ss_pred cCCChHHHHHHHhCCCeE
Q 016622 356 FGRGSGSQVVQQFGIPHL 373 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl 373 (386)
.....+.+++.++++++
T Consensus 157 -~~~~~~~~~~~~~~~~~ 173 (199)
T 3l0i_B 157 -DYTTAKEFADSLGIPFL 173 (199)
T ss_dssp -CSCC-CHHHHTTTCCBC
T ss_pred -CHHHHHHHHHHcCCeEE
Confidence 12345677777887653
No 370
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.14 E-value=0.24 Score=46.65 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=30.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC---CCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~---G~rVllID~D 211 (386)
+.+.|+ |..|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 46 NNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 466666 999999999999999988765 7888888874
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.13 E-value=0.23 Score=41.04 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.|+|+ |..|+||||++..|+..+ |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 56666 889999999999998876 444 467664
No 372
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=90.10 E-value=0.43 Score=47.36 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=40.4
Q ss_pred CceEEEEEeCc-CCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 172 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 172 ~~kvI~v~s~k-GGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
++|-|.|++|- .|.||-.+|+.|+..|..+|+||..+..||+-+-
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnv 47 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINV 47 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSS
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceee
Confidence 36889999876 8999999999999999999999999999997643
No 373
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.07 E-value=2 Score=40.80 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLA 195 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA 195 (386)
++|+++ |..|+||||+.-.|+
T Consensus 180 ~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEE-CBTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHH
Confidence 467787 899999999987765
No 374
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.04 E-value=0.21 Score=42.35 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=24.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+|+++ |..|+||||++..|+. ..+ -...+|.|.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~---~~~-g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA---QLD-NSAYIEGDI 36 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH---HSS-SEEEEEHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc---ccC-CeEEEcccc
Confidence 3566776 8899999999999975 222 235566653
No 375
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.04 E-value=0.25 Score=46.73 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~------G~rVllID~D~ 212 (386)
+.++.++ |..|+||||++..++..++.. |.+|++||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3577777 889999999999999887432 35889999854
No 376
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.02 E-value=0.22 Score=42.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.|++. |-.|+||||++..||..|
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCccCHHHHHHHHHHhc
Confidence 56666 889999999999999887
No 377
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.96 E-value=0.22 Score=48.07 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~------~G~rVllID~D~ 212 (386)
+.++.|+ |..|+||||++.+|+..... .+.+|++||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3577776 89999999999999876653 467899999864
No 378
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.51 Score=48.17 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s-------~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
..+.+.|+|||+--.-.......+..+|.+++|+...... .......+..+...+++.+-+|+|+++...
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 5678999999864333333333355689999999887632 235666777777888886778899998643
No 379
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=89.76 E-value=0.52 Score=43.43 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCcCC
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~-~~~~~l~~~--~~~i~gvVlN~~~~~ 347 (386)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+. ..+..+... +.++ -+|.||++..
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE-EEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE-EEEEEchhcc
Confidence 4567799998632211112222445789998887654 4555554 344444433 5554 4888998853
No 380
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.60 E-value=0.32 Score=55.99 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.++.++ +.+|+||||++.++|..+++.|.+|++||+....
T Consensus 384 ~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 384 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 456665 9999999999999999999999999999998633
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.58 E-value=0.21 Score=43.61 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
++.|.|. |-.|+||||++..||..+
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3467676 889999999999999877
No 382
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.45 E-value=0.42 Score=47.07 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=31.5
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+..+|.++ |-.|+||||++..|+..+...+.++..++.|
T Consensus 38 ~~~~Ivlv-GlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMV-GLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 33455555 9999999999999999998888888887754
No 383
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.44 E-value=0.33 Score=55.83 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++.+.++ |-.|+|||++|.++|....++|.+|++||++-
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4566666 99999999999999999999999999999874
No 384
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.43 E-value=0.55 Score=40.50 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=32.8
Q ss_pred cccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 168 ~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
....|+++..++ |.-|+||||-....+..+..+|++|+++...
T Consensus 15 ~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 344567766666 7789999999888888888899999999744
No 385
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.38 E-value=0.28 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+.+|++. |..|+||||++..|+..+
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4588888 999999999999999776
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.30 E-value=0.32 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=25.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
++|+ .+|-.|+||||++..||..+ ..-+|.+|-.
T Consensus 4 ~~i~-i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVA-IVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp EEEE-EECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred cEEE-EECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 3454 45889999999999988754 4578888853
No 387
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.23 E-value=0.52 Score=43.79 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
++++|.| +|-.|+||||++..||..+ ..-+|.+|-.
T Consensus 9 ~~~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFL-MGPTASGKTALAIELRKIL-----PVELISVDSA 44 (316)
T ss_dssp CCEEEEE-ECCTTSCHHHHHHHHHHHS-----CEEEEECCTT
T ss_pred CCcEEEE-ECCCccCHHHHHHHHHHhC-----CCcEEecccc
Confidence 3455555 4899999999999998764 3567888753
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.04 E-value=0.21 Score=43.77 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.|. |..|+||||++..||..+ |. ..+|.|
T Consensus 8 ~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 8 LRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 467776 889999999999988765 44 456654
No 389
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.89 E-value=0.22 Score=42.59 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=26.0
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.++ |..|+|||+++..++..+...+.++.++..+
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 5555 8899999999999999987665544444433
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.84 E-value=0.39 Score=42.23 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.+|+|.+. |-+|+||+|.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45778777 889999999999999876
No 391
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.83 E-value=0.44 Score=48.98 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=31.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
-+++.-|-+|+|||++.+++...+.++|.+||++-
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 36677799999999999999999999999999875
No 392
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.79 E-value=0.39 Score=41.73 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=22.1
Q ss_pred cCCceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 170 ~~~~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
..++++|+|+ ||.|+||+|+|-.|...+
T Consensus 8 ~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 3456788887 999999999998776544
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.79 E-value=0.27 Score=42.61 Aligned_cols=30 Identities=17% Similarity=0.074 Sum_probs=23.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.|+|+ |..|+||||++..|+..+ |..+ +|+
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~ 31 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQ--IST 31 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeH
Confidence 36665 888999999999999877 5544 555
No 394
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.68 E-value=0.52 Score=44.46 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D~ 212 (386)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 56665 999999999999999988776 68888888754
No 395
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.65 E-value=0.3 Score=43.85 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=30.8
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||++|..++..+.+.+.+++.+++..
T Consensus 31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 45555 89999999999999988877778899998764
No 396
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.61 E-value=0.3 Score=45.98 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=29.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~------G~rVllID~D~ 212 (386)
+.+.++ |.+|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 355555 999999999999999998764 66777777643
No 397
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.56 E-value=0.54 Score=40.57 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCChH-----------HH---hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 016622 279 GELDYLVIDMPPGTGDI-----------QL---TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-----------~~---~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~ 344 (386)
..+.+.|+|||+ ..+. .. .+.....+|.+++|+.....--......++.+.+.+.+++ +|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence 567899999986 3210 00 1111122567888888765322344556777777777755 888998
Q ss_pred cCCC
Q 016622 345 HFDA 348 (386)
Q Consensus 345 ~~~~ 348 (386)
+...
T Consensus 155 Dl~~ 158 (223)
T 4dhe_A 155 DKLT 158 (223)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 8643
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.53 E-value=0.51 Score=47.16 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+++++ |..|+||||++..++..+...|.+++++...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3467776 9999999999999999998889999888764
No 399
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.53 E-value=0.53 Score=40.46 Aligned_cols=91 Identities=12% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcCCCCCceecc
Q 016622 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~~---~~~i~gvVlN~~~~~~~~~~~~~ 355 (386)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... ....+-+|+|+++......
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~---- 158 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE---- 158 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccc----
Confidence 5778999998632211222223456799999988654 3445555444444332 1223568899998643211
Q ss_pred cCCChHHHHHHHhCCCeEE
Q 016622 356 FGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 356 ~~~~~~~~i~~~~g~pvl~ 374 (386)
......+++++.++++++.
T Consensus 159 v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 159 VNERQARELADKYGIPYFE 177 (217)
T ss_dssp SCHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHHHHCCCcEEE
Confidence 1123466777788877654
No 400
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.51 E-value=0.5 Score=46.31 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCC-cEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~-rVllI 208 (386)
..+..|..|+||||++..++..|...|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4444588999999999999999998887 67776
No 401
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=88.51 E-value=0.63 Score=45.08 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 48 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 48 APFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 45689999999999999999999876
No 402
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.48 E-value=0.35 Score=41.90 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.+++|+++ |-.|+||||++..|+..+
T Consensus 7 ~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 45677776 899999999999887654
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.18 E-value=0.45 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=24.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
++.|.++ |-.|+||||++..|+..+ | ...+++|
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 3466666 899999999999998776 4 3455654
No 404
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.14 E-value=0.33 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAY 196 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~ 196 (386)
.++|+|+ |-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 4688888 8999999999998885
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.09 E-value=0.37 Score=41.65 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=23.2
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.|+|+ |..|+||||++..|+..+ |.. .+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~~--~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EIP--HISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCc--EeeHH
Confidence 45665 899999999999998776 443 45553
No 406
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.06 E-value=0.75 Score=41.54 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=29.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-CCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-G~rVllID~D 211 (386)
..+++|+ |..|+||||+...|+..+... ..++.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 3578887 888999999999999988753 4466666544
No 407
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.01 E-value=0.36 Score=43.26 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
..+.+|+++ |..|+||||++-.||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345689998 889999999999888655
No 408
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.87 E-value=0.3 Score=49.22 Aligned_cols=39 Identities=38% Similarity=0.458 Sum_probs=32.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G-~rVllID~D~ 212 (386)
+.+|+++ |..|+||||++..||..+...+ .++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4677777 8899999999999999997544 5787888875
No 409
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.81 E-value=0.6 Score=44.62 Aligned_cols=36 Identities=33% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
-++|+ |..|+||||+...++..+...|.+++++|.+
T Consensus 37 ~~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555 8899999999999999988899999999865
No 410
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.69 E-value=0.34 Score=40.83 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+++|+++ |..|+||||+...|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3577776 899999999999988765
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.62 E-value=1.8 Score=42.13 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 304 PLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 304 ~~d~vviV~~~~~~-s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
.+|.+++|...... +..+ .+..+.+...+.+++ +|+|+++..
T Consensus 263 ~ad~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~i-lv~NK~Dl~ 305 (439)
T 1mky_A 263 KADVVVIVLDATQGITRQD-QRMAGLMERRGRASV-VVFNKWDLV 305 (439)
T ss_dssp HCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEE-EEEECGGGS
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEE-EEEECccCC
Confidence 45777777665432 2222 345566666666654 778998854
No 412
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.61 E-value=0.8 Score=40.60 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=27.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+-|.++ |..|+|||+++..+|..+ +.++..+++..
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 456666 889999999999998866 66777777653
No 413
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.60 E-value=0.31 Score=41.56 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.1
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|.|+ |-.|+||||+|..||.. |.++++++...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4555 78899999999998754 78999998865
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.60 E-value=0.37 Score=42.19 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.|.|. |-.|+||||++..|+..+ |. ..+++|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 45565 899999999999999877 54 345653
No 415
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.34 E-value=0.66 Score=42.24 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+.++ |..|+|||+++..+|..+ +.++..+++..
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 456666 889999999999999887 67888888754
No 416
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.28 E-value=0.47 Score=40.67 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.1
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G 202 (386)
+++++ |..|+||||+...|+..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 67787 9999999999999999988667
No 417
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.26 E-value=0.51 Score=46.10 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC--CCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~--G~rVllID~D 211 (386)
.+.+.++ |..|+||||++..+|..+... |.+++.+++.
T Consensus 130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456666 889999999999999998865 8899998875
No 418
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=87.08 E-value=0.75 Score=44.65 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
.++|+|+ |--||||++..|+..|...|++|.++
T Consensus 39 ~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 4699999 45689999999999999999999987
No 419
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=86.98 E-value=0.7 Score=34.39 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=52.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHH-HHHHHHHHhh-cCCCcceeEE
Q 016622 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDM-FEQRANEVVL-AIPWVNKVNV 150 (386)
Q Consensus 74 ~~~~~~i~~~L~~V~dPe~~~div~lg~V~~v~~~~~~~~v~v~l~lt~~~cp~~~~-i~~~i~e~l~-~l~gv~~v~v 150 (386)
....+.|.++|++ .-|-+. -+=|=|.-+.+++ +.|.|.+.-.+.+||.... +..-|+..|. .+|+++.+..
T Consensus 6 ~~~~~~I~~~L~~-IRP~L~---~dGGdvelv~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~ 78 (88)
T 1xhj_A 6 PTMFDQVAEVIER-LRPFLL---RDGGDCTLVDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp SCHHHHHHHHHHH-HHHHHH---HHSCEEEEEECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHHHHH-hcHHHH---hcCCeEEEEEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4467889999998 667543 2345556666655 8999999999999998776 6667888885 5688877643
No 420
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=86.94 E-value=0.66 Score=43.28 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=28.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVll 207 (386)
.++|+|| |--||||++..++..|...|+++.+
T Consensus 108 ~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 108 HWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4799999 6689999999999999999998753
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.87 E-value=0.5 Score=42.04 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=25.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+|++. |-.|+||||++..||..| | ..++|.|.
T Consensus 9 ~~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 3467776 889999999999998877 3 34567654
No 422
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=86.70 E-value=0.94 Score=44.13 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=30.9
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
...++|.|+ |--||||++.-|+..|...|+||.++
T Consensus 50 ~~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 50 PAPKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999 55789999999999999999999986
No 423
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=86.68 E-value=1.2 Score=40.16 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=38.5
Q ss_pred CceEEEEEeC-cCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 016622 172 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (386)
Q Consensus 172 ~~kvI~v~s~-kGGvGKTTla~~LA~~La~~G~rVllID~D~~~~s 216 (386)
.+|-|.|++| -.|.||=.+|+.|+..|..+|+||-++.+||+-+-
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNv 67 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 67 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCC
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceec
Confidence 3567777754 56899999999999999999999999999997643
No 424
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.63 E-value=0.47 Score=40.44 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
++|+++ |..|+||||++..|+..+
T Consensus 7 ~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 477787 889999999998887765
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.56 E-value=0.45 Score=44.29 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=29.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
++++++ |..|+||||+.-.|+... .|+|+.+|..|..
T Consensus 5 ~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G 41 (318)
T 1nij_A 5 AVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEFG 41 (318)
T ss_dssp EEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSCC
T ss_pred cEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecCc
Confidence 466666 889999999988877653 6899999987753
No 426
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.55 E-value=0.57 Score=44.60 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred eCcCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 016622 180 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (386)
Q Consensus 180 s~kGGvGKTTla~~LA~~La~~------G~rVllID~D~ 212 (386)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 4999999999999999988753 67788888753
No 427
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.53 E-value=0.48 Score=40.38 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.9
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+.+|+++ |..|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3578887 889999999999888764
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.45 E-value=0.35 Score=41.61 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
++|.|+ |..|+||||++..|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 466666 889999999999998866
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.32 E-value=0.42 Score=41.34 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.|+++ |..|+||||++..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 45665 889999999999987654 54 345653
No 430
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=86.30 E-value=0.69 Score=45.55 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCCChHHHhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcCC
Q 016622 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (386)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~vviV~~~~~~s~-------~~~~~~~~~l~~~~~~i~gvVlN~~~~~ 347 (386)
..+.+.|+|||+-..-.......+..+|.+++|+....... ....+.+..+...+++.+-+++||++..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 45679999999632211122222445799999998776432 2455666667777887556889999864
No 431
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=86.14 E-value=0.62 Score=40.73 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=25.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+-.|++| |.-|+||||++..|+. .|.. +||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~----~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA----RGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH----TTCE--EEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH----CCCc--EEECcH
Confidence 4578999 7789999999887654 5754 578886
No 432
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.83 E-value=0.95 Score=40.24 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=25.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+-+.++ |..|+||||++..+|..+ +..+..+++
T Consensus 46 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 46 KGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CeEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 356676 889999999999999876 456666654
No 433
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=85.44 E-value=1.1 Score=44.55 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
..++|+|+ |-.||||++..|+..|...|++|.++-
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEEC
Confidence 34799999 557899999999999999999998763
No 434
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=85.40 E-value=0.51 Score=42.03 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=30.9
Q ss_pred cccCCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 016622 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (386)
Q Consensus 168 ~~~~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~ 213 (386)
..+.|+|++.|+++.||.|+ .+|..|+++|.+|.++|-+..
T Consensus 17 ~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 17 RGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -----CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 44567889999988888886 678889999999999987653
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.26 E-value=0.55 Score=42.19 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.6
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|+++ |..|+||||++..||..+ |. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 3578887 889999999999999877 33 4677664
No 436
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.24 E-value=0.68 Score=39.15 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La 199 (386)
.++++ |..|+||||+...|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 56776 8999999999999998873
No 437
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.14 E-value=0.86 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH----CCCcEEEE
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 208 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~----~G~rVllI 208 (386)
.+.+..|.+|+||||+...+...|.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 34455599999999999999988874 46688776
No 438
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.99 E-value=0.86 Score=43.19 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
..|.++ |..|+|||++|..+|..+ |.++..+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 456666 889999999999999877 67888888754
No 439
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.72 E-value=0.67 Score=40.06 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=19.9
Q ss_pred cccCCc-eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 168 GLQKIS-NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 168 ~~~~~~-kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
++..+. ++|++ +|..|+||||+...|+..+
T Consensus 13 ~~~~~~g~~ivl-~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVL-IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 344443 45555 5999999999998887654
No 440
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=84.67 E-value=1.1 Score=44.21 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.6
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
..++|.|++ --||||++.-|+..|...|++|.++
T Consensus 63 ~~~vI~VtG---TNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIAG---TNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SSCEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEeC---CCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 346999994 4689999999999999999999876
No 441
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=84.65 E-value=1 Score=43.96 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34799999 45799999999999999999999986
No 442
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.43 E-value=1.1 Score=40.23 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=25.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.+.++ |..|+|||++|..+|..+ |.+.+.+++
T Consensus 65 ~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 65 VSVLLE-GPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 466666 889999999999998874 566666654
No 443
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=84.36 E-value=0.54 Score=42.15 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|.|++.||++.+|.|+. +|..|++.|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45799999999999974 6788999999999998763
No 444
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=84.36 E-value=1.2 Score=44.48 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=30.0
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
..++|+|+ |-.||||++..|+..|...|++|.++
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLI 178 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 55789999999999999999999875
No 445
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.15 E-value=0.51 Score=39.93 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.8
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La 199 (386)
++|+++ |..|+||||+.-.|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 467776 8899999999999988775
No 446
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.13 E-value=4.8 Score=33.87 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCCChHH-HhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcCCCCCcee
Q 016622 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (386)
Q Consensus 280 ~yD~VIIDtpp~~~~~~-~~~~~~~~~d~vviV~~~~~-~s~~~~~~~~~~l~~----~~~~i~gvVlN~~~~~~~~~~~ 353 (386)
.+.+.|+|+++...... +....+..+|.+++|...+. .++..+...+..+.+ .+.+++ +|.|+++.......
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v- 148 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREV- 148 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCTTTCCS-
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEeechhccccCCc-
Confidence 46788999985432111 21111334688888877653 455666665555543 245544 88899986432111
Q ss_pred cccCCChHHHHHHHhCCCeEE
Q 016622 354 YPFGRGSGSQVVQQFGIPHLF 374 (386)
Q Consensus 354 ~~~~~~~~~~i~~~~g~pvl~ 374 (386)
.....+++++.++++++.
T Consensus 149 ---~~~~~~~~a~~~~~~~~e 166 (195)
T 3cbq_A 149 ---SLEEGRHLAGTLSCKHIE 166 (195)
T ss_dssp ---CHHHHHHHHHHTTCEEEE
T ss_pred ---CHHHHHHHHHHhCCEEEE
Confidence 112456677777876543
No 447
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=84.02 E-value=0.89 Score=44.16 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCh-------HHHhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcCCC
Q 016622 282 DYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (386)
Q Consensus 282 D~VIIDtpp~~~~-------~~~~~~~~~~~d~vviV~~~~~~s~~~~~~~~~~l~~~~~~i~gvVlN~~~~~~ 348 (386)
.+.|+|||+-... .......+..+|.+++|+..+.. ....+.++.+.+.+.+++ +|+|+++...
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~--~~~~~~l~~l~~~~~piI-vV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPFV-VVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC--HHHHHHHHHHHHTTCCEE-EECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh--HHHHHHHHHHHhcCCCEE-EEEeCcCCCC
Confidence 6899999863211 11122234568999999987333 445677788888888865 8889998654
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.97 E-value=0.88 Score=40.03 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=26.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.+|+++ |..|+||||++..||..| | ..++|.|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 4578887 889999999999888766 4 35678764
No 449
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.93 E-value=0.94 Score=45.12 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.9
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+.++ |..|+||||++..+|..+ |..++.+++.
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 466666 889999999999998877 7888887764
No 450
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.78 E-value=0.91 Score=39.04 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=22.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~ 201 (386)
+.+.|+ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 356666 899999999999999888643
No 451
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.74 E-value=0.91 Score=39.97 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+|+|+ +..|+||||++..||..| |.+ ++|.|.
T Consensus 15 ~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 15 LIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 467666 889999999999999877 554 477765
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.67 E-value=0.85 Score=39.60 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+|.|. |.+|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 46666 889999999999999876
No 453
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.47 E-value=1.2 Score=41.40 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=27.8
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+-|.++ |..|+|||++|..+|..+ .+..+..+++.
T Consensus 45 ~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred CceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 3567777 889999999999999876 35666667653
No 454
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.46 E-value=1.3 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=26.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.+.+.++ |..|+||||++..+|..+ +.....+++
T Consensus 54 ~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 4567777 889999999999988765 556666665
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.43 E-value=0.53 Score=46.31 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=32.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCC-cEEEEEcCCCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVYG 214 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~-rVllID~D~~~ 214 (386)
+.++++. |..|+||||+...|+-.+...+- +++++|.|+.+
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 4588888 88899999999999988765434 65778887643
No 456
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.41 E-value=1.2 Score=40.03 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.3
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+.++ |..|+|||+++..+|..+ +.++..+++.
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 456666 889999999999887764 6677777653
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.36 E-value=0.74 Score=39.93 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
..+.|+|+ |..|+||||+|..|+ ++|. -+|..|
T Consensus 33 ~g~~ilI~-GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLIT-GDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TTEEEEEE-CCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 34677777 899999999887665 5565 445555
No 458
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.28 E-value=1.4 Score=41.59 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.4
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
..+.|.++ |..|+|||+++..+|..+ |..++.+++.
T Consensus 116 ~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 34567777 889999999999998754 7788888764
No 459
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=83.23 E-value=1.4 Score=43.07 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=27.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVll 207 (386)
++|+|+ |--||||++..++..|...|+++.+
T Consensus 113 ~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 113 QLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 799999 4567999999999999999988754
No 460
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.18 E-value=1.2 Score=43.02 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=30.0
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
-+.|. |..|+|||++...+...+...|.+|+++|..
T Consensus 55 h~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 55 HLLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp CEEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 44555 7889999999888888888899999999864
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.15 E-value=1.2 Score=37.75 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=21.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 204 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~r 204 (386)
.+-+.|+ |..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 4577777 8899999999887654 6764
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.13 E-value=0.73 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La 199 (386)
+.|+|. |--|+||||++..|+..|.
T Consensus 3 ~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 567777 7799999999999998873
No 463
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=82.93 E-value=0.84 Score=45.99 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=28.2
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHH---HH-CCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~L---a~-~G~rVllID~D~ 212 (386)
..++|+|+ |-||+||||++..++... .. ....|..++++.
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 34677776 999999999999987643 22 223577777654
No 464
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=82.81 E-value=1.7 Score=39.23 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=32.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.++.+ ++-+|.||||++.+++...+++|.+++++-.+-..
T Consensus 22 s~~li-~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 22 LILIH-EEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL 61 (260)
T ss_dssp EEEEE-ECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH
T ss_pred cEEEE-EeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH
Confidence 45555 46677777799999999999999999999987533
No 465
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.75 E-value=0.8 Score=39.26 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.0
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La 199 (386)
++++|+ |..|+||||+.-.|+..+.
T Consensus 5 ~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 577777 8899999999999988663
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.74 E-value=0.53 Score=45.57 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+++|.+ .|-.|+||||++..|+..+ | ...||.|.
T Consensus 258 ~~lIil-~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVA-VGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp CCEEEE-ESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 345555 4999999999999887644 3 45566654
No 467
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.72 E-value=0.8 Score=40.22 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.1
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+.+|+|. |..|+||||++..|+.. +.+|.+..-+
T Consensus 19 ~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 35688888 88999999998887765 5677777544
No 468
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=82.59 E-value=1.3 Score=45.28 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~-~G~rVllID 209 (386)
+.+..|-+|+||||+...++..+.+ .+.+|+++-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455588999999999999999886 678888763
No 469
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.39 E-value=3.9 Score=38.05 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID 209 (386)
+..++|+ |..|+||||+...|+..+.... ..+.++
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3578887 7889999999988887765433 344554
No 470
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.29 E-value=1.1 Score=41.63 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=28.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHC-------CCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-------GARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~-------G~rVllID~D~ 212 (386)
+..+.++ |.+|+|||+++..++..|.+. +.+++.|+|-.
T Consensus 45 ~~~lli~-GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 45 NKLFYIT-NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CCEEEEE-CCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 3456555 999999999999999999753 24566666543
No 471
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.28 E-value=1.1 Score=37.18 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.++++. |..|+||||+...|+..+
T Consensus 34 e~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 588888 888999999999999887
No 472
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.17 E-value=1.3 Score=41.67 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.|.++ |-.|+|||++|..+|..+ |.+.+.+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 466776 889999999999999877 6777777764
No 473
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.98 E-value=1.3 Score=40.70 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=25.5
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+.|.++ |..|+||||++..+|..+ +...+.+++
T Consensus 50 ~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFY-GPPGCGKTLLAKAIANEC---QANFISIKG 82 (301)
T ss_dssp SEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred ceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence 467777 889999999999998765 456666654
No 474
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.45 E-value=1.2 Score=43.88 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=25.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHH-------CCCcEEEEEcC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDAD 211 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~-------~G~rVllID~D 211 (386)
-+.++ |..|+|||+++..||..+.. .|.++.-+|+.
T Consensus 203 ~~LL~-G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 203 NPVLI-GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEEEE-SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CeEEE-CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 45555 99999999999999999875 34555555443
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.37 E-value=1.6 Score=41.96 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.4
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
++|+|+ |-.|+||||++..||..+. .-+|.+|-
T Consensus 3 ~~i~i~-GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIA-GTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEEE-ECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEEE-CcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 355555 8889999999999998873 34688875
No 476
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.34 E-value=1.8 Score=41.92 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=29.9
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
...+|+|+ |..|+||||+...|+..+...+.++.+++-+
T Consensus 166 ~ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 34577777 9999999999999988886555577777643
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.08 E-value=1.9 Score=39.90 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
.+-+.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3467777 889999999999998765 567777765
No 478
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.99 E-value=0.75 Score=42.45 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=30.5
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||++|..++....+.+...+.++|..
T Consensus 27 ~vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 27 TVLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CEEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred cEEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 45565 89999999999999987777778888888754
No 479
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=80.96 E-value=0.75 Score=40.14 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=29.0
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
.+.|+|.|+++.||.|+ .+|..|+++|++|.+++-+
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 45678999988888886 5777888899999998764
No 480
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=80.87 E-value=1.8 Score=41.99 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.0
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
.++|+|+ |--||||++..|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4699999 55789999999999999999998865
No 481
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=80.44 E-value=1.7 Score=45.88 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.6
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHH-CCCcEEEE
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 208 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~-~G~rVllI 208 (386)
+.+..|-+|+||||+...++..|.+ .+.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4555699999999999999999886 67888876
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.41 E-value=0.99 Score=39.35 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~L 198 (386)
.|.|+ |.+|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 56666 999999999999999987
No 483
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=80.13 E-value=1.5 Score=40.55 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=24.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rV 205 (386)
+.+++|+ |..|+||||+...|+..+ .| +|
T Consensus 126 Ge~vaIv-GpsGsGKSTLl~lL~gl~--~G-~I 154 (305)
T 2v9p_A 126 KNCLAFI-GPPNTGKSMLCNSLIHFL--GG-SV 154 (305)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhhhc--Cc-eE
Confidence 3588998 888999999999999988 55 44
No 484
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=80.12 E-value=1.3 Score=39.58 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=21.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcE
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rV 205 (386)
++|+++ |+.|+||||++..|+.. .|.++
T Consensus 2 ~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 588888 78999999999877543 46554
No 485
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=79.97 E-value=1.8 Score=43.22 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=28.5
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllI 208 (386)
.++|+|| |--||||++..++..|...|+++.++
T Consensus 122 ~~vIaVT---GTnGKTTTt~li~~iL~~~G~~~~~~ 154 (524)
T 3hn7_A 122 RHVIAVA---GTHGKTTTTTMLAWILHYAGIDAGFL 154 (524)
T ss_dssp SEEEEEE---CSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcEEEEE---CCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 4799999 56799999999999999999887543
No 486
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=79.86 E-value=1 Score=39.93 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.3
Q ss_pred CceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 172 ~~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
|.|++.|+++.+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4579999999888886 46788899999999998653
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=79.80 E-value=0.47 Score=42.61 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCceEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 171 ~~~kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
+.++.|+|. |--|+||||++..|+..|
T Consensus 22 ~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345677777 889999999999988776
No 488
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=79.74 E-value=1.1 Score=37.35 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.6
Q ss_pred eEEEEEeCcCCCCHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVN 193 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~ 193 (386)
.++++. |..|+||||++..
T Consensus 10 ei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEE-CCTTSCHHHHHHH
T ss_pred EEEEEE-CCCCCCHHHHHHH
Confidence 478887 9999999999885
No 489
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.55 E-value=2.5 Score=44.12 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=33.4
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~~~ 214 (386)
.+.|+ |-.|+|||++|..+|..+...+...+.+|+....
T Consensus 523 ~~Ll~-Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFL-GPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEE-SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 57776 8899999999999999998888899999985433
No 490
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.36 E-value=1.3 Score=37.94 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.7
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La 199 (386)
+.++++. |..|+||||+.-.|+..+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 3588888 8999999999999887763
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.04 E-value=2 Score=40.46 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=26.6
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~ 210 (386)
+-|.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 85 ~~iLL~-GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEE-CSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 456676 889999999999999877 567777765
No 492
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=79.03 E-value=1.8 Score=42.47 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.4
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEE
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVll 207 (386)
.++|+|+ |--||||++..|+..|...|++|.+
T Consensus 114 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTV 145 (469)
T ss_dssp CCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 3699999 5568999999999999999988743
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=78.99 E-value=2.2 Score=39.34 Aligned_cols=34 Identities=21% Similarity=0.023 Sum_probs=26.7
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.|+ |..|+||||++..++..+ +.+++.+++..
T Consensus 32 ~v~i~-G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVL-GLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred cEEEE-CCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 55555 889999999999988765 34688898864
No 494
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=78.89 E-value=18 Score=29.88 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.7
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|.|+++.|+.|+ +++..|.++|++|.+++-+.
T Consensus 4 ~~ilVtGatG~iG~-----~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGL-----TTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHH-----HHHHHHHHCCCeEEEEEeCh
Confidence 57899977777775 56677888899999998654
No 495
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.82 E-value=0.9 Score=39.75 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=15.1
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHH-HHH
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLA-YTL 198 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA-~~L 198 (386)
+++|+++ |-.|+||||+...|+ ..+
T Consensus 27 G~ii~l~-Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLS-SPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEE-CSCC----CHHHHHHC---
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcCC
Confidence 3588888 888999999999888 654
No 496
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=78.79 E-value=1.8 Score=46.99 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred ceEEEEEeCcCCCCHHHHHHHHHHH--HH-HCCCcEEEEEcCC
Q 016622 173 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 212 (386)
Q Consensus 173 ~kvI~v~s~kGGvGKTTla~~LA~~--La-~~G~rVllID~D~ 212 (386)
.++|+|+ |-||+||||+|..++.. .. .-...++.++.+.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4688887 89999999999998853 22 3345688888754
No 497
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.66 E-value=1.1 Score=41.74 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.9
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
+.|+ |..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 6665 88999999999999999875544444555443
No 498
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=78.65 E-value=1.2 Score=38.83 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEeCcCCCCHHHHHHHHHHHH
Q 016622 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (386)
Q Consensus 174 kvI~v~s~kGGvGKTTla~~LA~~L 198 (386)
++++++ |..|+||||+.-.|+..+
T Consensus 24 ~~~~lv-GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVIC-GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 578887 889999999999998876
No 499
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.55 E-value=1.6 Score=39.92 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.3
Q ss_pred EEEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 016622 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (386)
Q Consensus 175 vI~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D~ 212 (386)
.+.++ |..|+|||+++..++..+ +.++..+++..
T Consensus 40 ~vll~-G~~GtGKT~la~~i~~~~---~~~~~~~~~~~ 73 (324)
T 1hqc_A 40 HLLLF-GPPGLGKTTLAHVIAHEL---GVNLRVTSGPA 73 (324)
T ss_dssp CCEEE-CCTTCCCHHHHHHHHHHH---TCCEEEECTTT
T ss_pred cEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeccc
Confidence 55565 889999999999998876 56677676543
No 500
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.34 E-value=1.9 Score=39.71 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=25.7
Q ss_pred EEEEeCcCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Q 016622 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (386)
Q Consensus 176 I~v~s~kGGvGKTTla~~LA~~La~~G~rVllID~D 211 (386)
+.+.+|..|+|||+++..+|..+ |.+++.+++.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 34555889999999999998766 6777777753
Done!