Query 016623
Match_columns 386
No_of_seqs 300 out of 795
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.4E-36 1.5E-40 240.1 6.0 75 114-189 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 9.1E-36 3.1E-40 239.3 4.4 75 114-189 4-78 (78)
3 2rpr_A Flywch-type zinc finger 86.3 0.33 1.1E-05 38.1 2.2 64 114-190 11-76 (87)
4 1cz6_A Protein (androctonin); 20.2 24 0.00082 22.9 0.2 8 149-156 16-23 (26)
5 1xiw_B T-cell surface glycopro 19.5 53 0.0018 25.4 2.1 49 128-185 17-75 (79)
6 1xiw_A T-cell surface glycopro 13.2 61 0.0021 27.2 1.0 40 113-155 21-79 (105)
7 3ed7_A Tsase, TS, thymidylate 12.0 38 0.0013 32.9 -0.7 12 128-139 116-127 (295)
8 3kgb_A Thymidylate synthase 1/ 11.8 38 0.0013 32.9 -0.8 12 128-139 113-124 (294)
9 1odh_A MGCM1; transcription fa 9.7 1.8E+02 0.0061 26.5 2.9 17 175-191 144-160 (174)
10 2vsd_A CHIR AB1; immune system 9.4 66 0.0023 24.3 -0.0 68 114-186 20-103 (105)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-36 Score=240.08 Aligned_cols=75 Identities=52% Similarity=1.105 Sum_probs=72.3
Q ss_pred eeEEEEeccCCCCCCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623 114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 189 (386)
Q Consensus 114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~ 189 (386)
.||.|++.++.++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 389999999999999999999999999999999999999998 699999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=9.1e-36 Score=239.30 Aligned_cols=75 Identities=55% Similarity=1.051 Sum_probs=69.1
Q ss_pred eeEEEEeccCCCCCCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623 114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 189 (386)
Q Consensus 114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~ 189 (386)
-||+|+++++.++++|||+|||||||.|||++|||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 378899999999999999999999999999999999999999 799999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=86.31 E-value=0.33 Score=38.07 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=38.5
Q ss_pred eeEEEEeccCCCCCCccchhhhccccccCCCCCCCcccccccc--CCcccccceeeecCCCcEEEEEeccCCCCCCChh
Q 016623 114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA 190 (386)
Q Consensus 114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~--~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~a 190 (386)
..++...+.-.-++-|||..++--+ . ..+.|.+|+.. .+|.|+-.... ++ +...+.|||++...
T Consensus 11 ~~fv~s~rG~~~Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~~ 76 (87)
T 2rpr_A 11 LEFLRTSLGGRFLVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDLA 76 (87)
T ss_dssp CEEEEETTTEEEEEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCHH
T ss_pred eEEEEcCCCCcEEEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCchh
Confidence 3443333333345789998876322 1 23689999984 58999754432 21 23468899976543
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=20.24 E-value=24 Score=22.88 Aligned_cols=8 Identities=50% Similarity=1.248 Sum_probs=6.6
Q ss_pred cccccccc
Q 016623 149 AYYRCTMA 156 (386)
Q Consensus 149 sYYRCT~~ 156 (386)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=19.50 E-value=53 Score=25.45 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=27.1
Q ss_pred Cccchhhhccccc--------cC--CCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCC
Q 016623 128 TDGCQWRKYGQKM--------AK--GNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 185 (386)
Q Consensus 128 ~DGy~WRKYGQK~--------IK--Gsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH 185 (386)
.+++.|.|-|... +. ...-||+||+|... +.+.. ..+.|.|-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~~---~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYKD---KESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCCc---ccEEEEEEhhhcCCc
Confidence 5779999988642 22 33459999999542 11110 012466777766665
No 6
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=13.23 E-value=61 Score=27.17 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=25.9
Q ss_pred ceeEEEEeccCCCCCCccchhhhccccc----------------cCCCCC---CCccccccc
Q 016623 113 KARVSVRARSEAPMITDGCQWRKYGQKM----------------AKGNPC---PRAYYRCTM 155 (386)
Q Consensus 113 k~RV~v~t~se~~~~~DGy~WRKYGQK~----------------IKGsp~---PRsYYRCT~ 155 (386)
..+|.+....+ ..+...|.|-|+.. +.++-. ||.||+|..
T Consensus 21 g~~V~LTCp~~---~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 21 GTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTEEEEECSSC---TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCEEEEECCCC---CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 35666665322 34558899988653 335533 999999974
No 7
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=11.99 E-value=38 Score=32.91 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=9.5
Q ss_pred Cccchhhhcccc
Q 016623 128 TDGCQWRKYGQK 139 (386)
Q Consensus 128 ~DGy~WRKYGQK 139 (386)
-=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 357999999865
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=11.75 E-value=38 Score=32.87 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=9.4
Q ss_pred Cccchhhhcccc
Q 016623 128 TDGCQWRKYGQK 139 (386)
Q Consensus 128 ~DGy~WRKYGQK 139 (386)
-=|++||.+|-+
T Consensus 113 vYG~QwR~~~~~ 124 (294)
T 3kgb_A 113 IYGFQWRHFGAR 124 (294)
T ss_dssp CHHHHHHSBTCC
T ss_pred ccchhhhcCCCc
Confidence 357999999864
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=9.74 E-value=1.8e+02 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCCChhh
Q 016623 175 LITTYEGNHNHPLPPAA 191 (386)
Q Consensus 175 l~tTYeG~HnH~~P~a~ 191 (386)
+...-+|.|.|+.|.+.
T Consensus 144 ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 144 IFFQSKGEHDHPRPETK 160 (174)
T ss_dssp EEEEEECCCCSCCCCCH
T ss_pred EEEecccccCCCCCCCc
Confidence 44456899999999875
No 10
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=9.37 E-value=66 Score=24.34 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=30.8
Q ss_pred eeEEEEeccCCCCCCccchhhhccccccC----CCC------------CCCccccccccCCcccccceeeecCCCcEEEE
Q 016623 114 ARVSVRARSEAPMITDGCQWRKYGQKMAK----GNP------------CPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177 (386)
Q Consensus 114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IK----Gsp------------~PRsYYRCT~~~gC~arKqVQR~~dD~~il~t 177 (386)
..|.++...+.. ..-|.|.|-|+.... ... .-.+-|+|....+-+. +.-..-|+-.|.|
T Consensus 20 ~~VtL~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~---~~s~~Sdpl~L~V 94 (105)
T 2vsd_A 20 DTVTLRCHLPRM--AAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPL---WTSNQSDPVELVL 94 (105)
T ss_dssp CEEEEEEECCSS--CEEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEETTE---EECCCCCCEEECC
T ss_pred CCEEEEEEcCCC--CcEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCC---cccCCCCCEEEEE
Confidence 456676665433 356888887753210 110 1124788876311111 1122347777899
Q ss_pred EeccCCCCC
Q 016623 178 TYEGNHNHP 186 (386)
Q Consensus 178 TYeG~HnH~ 186 (386)
+|.+.|.|.
T Consensus 95 ~~~~~~~~~ 103 (105)
T 2vsd_A 95 TIEGRHHHH 103 (105)
T ss_dssp C--------
T ss_pred EEecccccc
Confidence 999999875
Done!