Query 016624
Match_columns 386
No_of_seqs 249 out of 1576
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 1.4E-12 3E-17 93.1 2.6 44 33-76 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.1 4.4E-11 9.6E-16 119.6 2.4 49 33-81 230-279 (348)
3 PHA02929 N1R/p28-like protein; 99.0 1.6E-10 3.6E-15 110.7 4.7 54 27-80 169-227 (238)
4 KOG0823 Predicted E3 ubiquitin 99.0 1.2E-10 2.7E-15 110.0 3.1 55 29-86 44-101 (230)
5 PLN03208 E3 ubiquitin-protein 99.0 2.1E-10 4.6E-15 106.5 4.2 55 27-84 13-83 (193)
6 KOG0317 Predicted E3 ubiquitin 99.0 2.5E-10 5.4E-15 110.9 3.5 55 26-83 233-287 (293)
7 PF12678 zf-rbx1: RING-H2 zinc 99.0 3.9E-10 8.5E-15 89.5 4.0 45 32-76 19-73 (73)
8 smart00504 Ubox Modified RING 98.9 1.1E-09 2.4E-14 82.8 5.3 58 32-92 1-58 (63)
9 PF13923 zf-C3HC4_2: Zinc fing 98.9 8.5E-10 1.8E-14 77.0 2.7 39 35-75 1-39 (39)
10 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.6E-09 3.5E-14 79.4 3.4 47 31-80 1-48 (50)
11 PF15227 zf-C3HC4_4: zinc fing 98.8 2.2E-09 4.8E-14 76.6 3.2 38 35-75 1-42 (42)
12 KOG0320 Predicted E3 ubiquitin 98.8 1.6E-09 3.4E-14 99.0 2.4 53 31-84 130-182 (187)
13 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.1E-14 107.6 5.1 59 32-93 26-84 (397)
14 cd00162 RING RING-finger (Real 98.8 6.2E-09 1.3E-13 72.0 3.7 44 34-79 1-45 (45)
15 COG5540 RING-finger-containing 98.8 4.5E-09 9.7E-14 102.9 3.3 50 32-81 323-373 (374)
16 COG5243 HRD1 HRD ubiquitin lig 98.8 4.3E-09 9.3E-14 105.3 3.2 53 29-81 284-346 (491)
17 PHA02926 zinc finger-like prot 98.7 6.6E-09 1.4E-13 98.1 3.7 60 22-81 160-231 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.7 9.6E-09 2.1E-13 83.9 3.7 51 32-82 21-84 (85)
19 KOG0287 Postreplication repair 98.7 7.7E-09 1.7E-13 102.5 2.1 66 25-95 18-83 (442)
20 PF00097 zf-C3HC4: Zinc finger 98.7 1.5E-08 3.2E-13 70.9 2.9 39 35-75 1-41 (41)
21 KOG0311 Predicted E3 ubiquitin 98.7 2.5E-09 5.5E-14 106.3 -1.7 49 32-82 43-92 (381)
22 PF14634 zf-RING_5: zinc-RING 98.6 3.3E-08 7.2E-13 70.8 3.3 44 34-77 1-44 (44)
23 KOG2164 Predicted E3 ubiquitin 98.6 2E-08 4.4E-13 104.0 2.7 54 32-88 186-244 (513)
24 PF04564 U-box: U-box domain; 98.6 6.1E-08 1.3E-12 76.7 4.5 62 31-95 3-65 (73)
25 KOG0802 E3 ubiquitin ligase [P 98.4 6.4E-08 1.4E-12 102.8 2.0 52 29-80 288-341 (543)
26 smart00184 RING Ring finger. E 98.4 1.8E-07 3.9E-12 62.4 3.5 38 35-75 1-39 (39)
27 COG5574 PEX10 RING-finger-cont 98.4 8.7E-08 1.9E-12 92.4 2.6 51 30-83 213-265 (271)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 4.2E-07 9.1E-12 65.4 2.9 38 35-73 1-43 (43)
29 KOG2177 Predicted E3 ubiquitin 98.3 2.2E-07 4.9E-12 86.0 1.9 45 30-77 11-55 (386)
30 TIGR00570 cdk7 CDK-activating 98.2 4.8E-07 1E-11 89.7 1.9 57 31-87 2-61 (309)
31 PF14835 zf-RING_6: zf-RING of 98.2 5.5E-07 1.2E-11 69.9 1.4 58 32-93 7-64 (65)
32 COG5432 RAD18 RING-finger-cont 98.2 8.4E-07 1.8E-11 86.8 2.6 47 32-81 25-71 (391)
33 KOG1493 Anaphase-promoting com 98.1 8.8E-07 1.9E-11 70.8 0.6 51 32-82 20-83 (84)
34 COG5194 APC11 Component of SCF 98.0 4.1E-06 8.8E-11 67.6 3.3 36 48-83 49-84 (88)
35 KOG1785 Tyrosine kinase negati 97.8 0.00018 3.9E-09 73.3 11.2 48 34-84 371-420 (563)
36 KOG1039 Predicted E3 ubiquitin 97.8 1.5E-05 3.2E-10 80.5 3.1 58 25-82 154-223 (344)
37 PF11793 FANCL_C: FANCL C-term 97.7 5.8E-06 1.3E-10 65.2 -0.9 50 32-81 2-67 (70)
38 KOG1734 Predicted RING-contain 97.7 1E-05 2.2E-10 78.6 0.3 55 28-82 220-283 (328)
39 KOG0828 Predicted E3 ubiquitin 97.7 2.3E-05 4.9E-10 81.4 2.5 50 32-81 571-635 (636)
40 KOG2930 SCF ubiquitin ligase, 97.6 2.1E-05 4.6E-10 66.3 1.5 51 31-81 45-109 (114)
41 KOG2660 Locus-specific chromos 97.6 1.8E-05 3.8E-10 78.8 0.7 49 32-82 15-63 (331)
42 smart00744 RINGv The RING-vari 97.6 7E-05 1.5E-09 55.2 3.4 42 34-76 1-49 (49)
43 KOG0824 Predicted E3 ubiquitin 97.6 4E-05 8.7E-10 75.5 2.7 48 32-82 7-55 (324)
44 KOG0978 E3 ubiquitin ligase in 97.5 2.5E-05 5.5E-10 84.6 1.0 51 32-85 643-694 (698)
45 COG5219 Uncharacterized conser 97.5 2.5E-05 5.5E-10 86.0 0.6 49 32-80 1469-1523(1525)
46 KOG4159 Predicted E3 ubiquitin 97.5 5.3E-05 1.2E-09 77.9 2.9 56 23-81 75-130 (398)
47 KOG4172 Predicted E3 ubiquitin 97.5 2.9E-05 6.3E-10 58.6 0.7 48 30-80 5-54 (62)
48 KOG0825 PHD Zn-finger protein 97.5 2.6E-05 5.6E-10 84.6 -0.2 54 28-81 119-172 (1134)
49 KOG4265 Predicted E3 ubiquitin 97.4 0.0001 2.2E-09 74.1 3.2 47 31-80 289-336 (349)
50 KOG0804 Cytoplasmic Zn-finger 97.4 6E-05 1.3E-09 77.6 1.4 47 32-80 175-222 (493)
51 KOG4445 Uncharacterized conser 97.2 0.0001 2.2E-09 72.7 0.4 51 32-82 115-188 (368)
52 KOG0827 Predicted E3 ubiquitin 97.1 0.00028 6E-09 71.7 2.7 48 33-80 5-56 (465)
53 KOG1645 RING-finger-containing 97.1 0.00042 9.1E-09 70.8 3.9 54 31-84 3-60 (463)
54 KOG0297 TNF receptor-associate 97.0 0.00026 5.6E-09 72.8 1.9 53 31-85 20-72 (391)
55 PF11789 zf-Nse: Zinc-finger o 97.0 0.00029 6.2E-09 53.6 1.5 41 32-74 11-53 (57)
56 KOG1813 Predicted E3 ubiquitin 96.9 0.00047 1E-08 68.0 2.5 61 32-95 241-301 (313)
57 COG5152 Uncharacterized conser 96.9 0.00043 9.3E-09 64.9 1.6 46 32-80 196-241 (259)
58 KOG1428 Inhibitor of type V ad 96.9 0.00092 2E-08 76.5 4.1 72 9-81 3464-3545(3738)
59 KOG3970 Predicted E3 ubiquitin 96.8 0.0017 3.6E-08 62.1 5.0 54 32-86 50-111 (299)
60 KOG2879 Predicted E3 ubiquitin 96.8 0.0011 2.4E-08 64.8 3.5 50 29-80 236-287 (298)
61 KOG4692 Predicted E3 ubiquitin 96.7 0.00076 1.7E-08 68.0 2.3 53 26-81 416-468 (489)
62 KOG1002 Nucleotide excision re 96.4 0.0018 3.9E-08 68.2 2.3 53 28-83 532-589 (791)
63 COG5222 Uncharacterized conser 96.3 0.0034 7.3E-08 62.2 3.5 52 33-86 275-328 (427)
64 KOG1814 Predicted E3 ubiquitin 96.0 0.0075 1.6E-07 62.0 4.4 47 32-78 184-238 (445)
65 KOG3039 Uncharacterized conser 95.8 0.0083 1.8E-07 58.1 3.5 54 31-84 220-274 (303)
66 KOG1941 Acetylcholine receptor 95.7 0.0036 7.8E-08 64.0 0.7 50 29-78 362-414 (518)
67 KOG3268 Predicted E3 ubiquitin 95.6 0.011 2.5E-07 54.7 3.4 51 32-82 165-230 (234)
68 PF14570 zf-RING_4: RING/Ubox 95.5 0.011 2.4E-07 43.6 2.5 45 35-79 1-47 (48)
69 KOG0826 Predicted E3 ubiquitin 95.3 0.014 3.1E-07 58.5 3.4 54 25-80 293-346 (357)
70 COG5236 Uncharacterized conser 95.2 0.017 3.6E-07 58.5 3.7 52 25-79 54-107 (493)
71 KOG1571 Predicted E3 ubiquitin 95.1 0.011 2.4E-07 59.8 2.1 47 29-81 302-348 (355)
72 KOG4275 Predicted E3 ubiquitin 95.1 0.004 8.7E-08 61.5 -1.1 42 32-80 300-342 (350)
73 KOG4185 Predicted E3 ubiquitin 95.1 0.027 5.8E-07 55.2 4.5 50 32-81 3-56 (296)
74 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.029 6.3E-07 54.6 3.8 53 30-83 111-164 (260)
75 KOG4739 Uncharacterized protei 94.7 0.011 2.4E-07 57.0 0.6 45 34-81 5-49 (233)
76 COG5175 MOT2 Transcriptional r 94.7 0.022 4.7E-07 57.5 2.7 53 31-83 13-67 (480)
77 PHA03096 p28-like protein; Pro 94.3 0.024 5.2E-07 56.2 2.2 45 33-77 179-231 (284)
78 PF05883 Baculo_RING: Baculovi 94.2 0.024 5.2E-07 50.3 1.7 46 31-76 25-76 (134)
79 KOG1940 Zn-finger protein [Gen 93.2 0.053 1.2E-06 53.5 2.3 53 28-81 154-207 (276)
80 PF03854 zf-P11: P-11 zinc fin 93.2 0.032 7E-07 41.1 0.6 44 34-82 4-48 (50)
81 KOG0801 Predicted E3 ubiquitin 92.9 0.032 6.9E-07 51.1 0.1 29 31-59 176-204 (205)
82 PF10367 Vps39_2: Vacuolar sor 92.7 0.044 9.6E-07 45.1 0.9 32 31-63 77-108 (109)
83 KOG0298 DEAD box-containing he 92.7 0.032 7E-07 64.2 -0.0 45 32-78 1153-1197(1394)
84 KOG1001 Helicase-like transcri 92.7 0.044 9.6E-07 60.2 1.0 47 33-83 455-503 (674)
85 PF12906 RINGv: RING-variant d 92.5 0.077 1.7E-06 38.7 1.7 40 35-75 1-47 (47)
86 KOG2114 Vacuolar assembly/sort 92.1 0.077 1.7E-06 59.0 1.9 42 32-78 840-881 (933)
87 KOG1952 Transcription factor N 92.1 0.09 2E-06 58.4 2.4 47 32-78 191-245 (950)
88 KOG2817 Predicted E3 ubiquitin 92.0 0.13 2.8E-06 52.9 3.2 46 32-77 334-382 (394)
89 PF08746 zf-RING-like: RING-li 92.0 0.077 1.7E-06 38.1 1.2 41 35-75 1-43 (43)
90 PHA02862 5L protein; Provision 91.9 0.13 2.8E-06 46.3 2.8 46 32-81 2-54 (156)
91 KOG2932 E3 ubiquitin ligase in 91.7 0.069 1.5E-06 53.4 1.0 42 34-79 92-133 (389)
92 PF14447 Prok-RING_4: Prokaryo 91.6 0.11 2.3E-06 39.5 1.6 47 32-83 7-53 (55)
93 KOG4367 Predicted Zn-finger pr 90.4 0.16 3.4E-06 53.0 2.1 34 30-66 2-35 (699)
94 PHA02825 LAP/PHD finger-like p 90.0 0.28 6E-06 44.8 3.1 47 30-80 6-59 (162)
95 KOG3002 Zn finger protein [Gen 89.0 0.29 6.4E-06 48.9 2.7 56 31-96 47-104 (299)
96 PF07800 DUF1644: Protein of u 88.8 0.44 9.6E-06 43.5 3.5 34 31-67 1-47 (162)
97 KOG3800 Predicted E3 ubiquitin 87.5 0.65 1.4E-05 46.2 4.0 52 34-85 2-56 (300)
98 KOG4362 Transcriptional regula 86.8 0.23 4.9E-06 54.5 0.4 48 32-82 21-71 (684)
99 KOG0825 PHD Zn-finger protein 86.4 0.49 1.1E-05 52.6 2.7 52 28-79 92-153 (1134)
100 PF10272 Tmpp129: Putative tra 86.3 0.42 9.2E-06 48.9 2.0 31 53-83 311-354 (358)
101 COG5220 TFB3 Cdk activating ki 85.9 0.23 4.9E-06 48.3 -0.1 51 29-79 7-63 (314)
102 KOG0827 Predicted E3 ubiquitin 84.6 0.11 2.3E-06 53.5 -3.1 52 31-82 195-247 (465)
103 KOG1812 Predicted E3 ubiquitin 84.5 0.4 8.7E-06 49.5 0.9 37 32-68 146-183 (384)
104 PF05290 Baculo_IE-1: Baculovi 83.4 0.91 2E-05 40.5 2.5 55 28-82 76-134 (140)
105 KOG3053 Uncharacterized conser 83.2 0.77 1.7E-05 45.0 2.2 52 30-81 18-83 (293)
106 PF02891 zf-MIZ: MIZ/SP-RING z 82.8 1.4 3E-05 32.5 3.0 43 33-78 3-50 (50)
107 COG5183 SSM4 Protein involved 82.1 0.88 1.9E-05 50.8 2.4 53 29-82 9-68 (1175)
108 KOG2034 Vacuolar sorting prote 81.3 0.77 1.7E-05 51.6 1.6 35 31-66 816-850 (911)
109 KOG3899 Uncharacterized conser 80.2 0.84 1.8E-05 45.6 1.3 31 53-83 325-368 (381)
110 KOG1100 Predicted E3 ubiquitin 80.0 0.78 1.7E-05 43.6 1.0 39 35-80 161-200 (207)
111 KOG4718 Non-SMC (structural ma 79.4 0.94 2E-05 43.3 1.3 45 33-79 182-226 (235)
112 KOG0309 Conserved WD40 repeat- 79.0 1.3 2.8E-05 49.3 2.3 42 32-74 1028-1069(1081)
113 COG5109 Uncharacterized conser 77.5 1.6 3.5E-05 44.0 2.4 46 32-77 336-384 (396)
114 KOG1815 Predicted E3 ubiquitin 76.1 1.6 3.5E-05 45.6 2.1 39 28-68 66-104 (444)
115 KOG3579 Predicted E3 ubiquitin 73.5 2.2 4.7E-05 42.6 2.0 41 26-69 262-306 (352)
116 PF14446 Prok-RING_1: Prokaryo 73.1 3.3 7.2E-05 31.4 2.5 33 32-64 5-38 (54)
117 KOG2068 MOT2 transcription fac 70.1 3.1 6.8E-05 42.1 2.4 49 32-80 249-298 (327)
118 PF14569 zf-UDP: Zinc-binding 68.6 5.4 0.00012 32.5 3.0 54 27-80 4-62 (80)
119 KOG3039 Uncharacterized conser 67.6 3.5 7.7E-05 40.4 2.1 33 32-67 43-75 (303)
120 KOG3161 Predicted E3 ubiquitin 67.3 2.3 5E-05 46.6 0.8 42 32-76 11-53 (861)
121 KOG2807 RNA polymerase II tran 67.2 4.9 0.00011 40.8 3.0 46 32-77 330-375 (378)
122 KOG0824 Predicted E3 ubiquitin 65.2 2 4.4E-05 43.0 -0.0 48 32-81 105-152 (324)
123 KOG1609 Protein involved in mR 64.9 3.5 7.5E-05 40.1 1.5 49 32-80 78-134 (323)
124 KOG1829 Uncharacterized conser 63.2 3.1 6.7E-05 45.2 0.9 41 32-75 511-556 (580)
125 PLN02189 cellulose synthase 61.4 7.1 0.00015 45.1 3.3 53 28-80 30-87 (1040)
126 KOG2066 Vacuolar assembly/sort 60.4 3.8 8.2E-05 45.8 0.9 46 31-77 783-832 (846)
127 KOG1812 Predicted E3 ubiquitin 58.9 4.9 0.00011 41.6 1.4 43 32-75 306-351 (384)
128 PF07191 zinc-ribbons_6: zinc- 57.9 1.7 3.6E-05 34.7 -1.7 41 32-80 1-41 (70)
129 KOG2169 Zn-finger transcriptio 57.6 18 0.0004 39.8 5.6 58 33-95 307-371 (636)
130 KOG3113 Uncharacterized conser 56.6 11 0.00024 37.2 3.2 74 8-83 71-161 (293)
131 PLN02436 cellulose synthase A 55.9 10 0.00022 44.1 3.3 54 27-80 31-89 (1094)
132 PLN02638 cellulose synthase A 55.5 11 0.00023 43.9 3.4 52 29-80 14-70 (1079)
133 KOG0269 WD40 repeat-containing 53.6 9.4 0.0002 42.7 2.5 44 34-78 781-826 (839)
134 KOG0802 E3 ubiquitin ligase [P 52.5 6.6 0.00014 42.3 1.1 45 32-83 479-523 (543)
135 KOG3842 Adaptor protein Pellin 52.2 12 0.00027 37.9 2.9 52 31-82 340-416 (429)
136 PLN02400 cellulose synthase 51.9 11 0.00023 44.0 2.7 54 27-80 31-89 (1085)
137 PF04710 Pellino: Pellino; In 51.1 5 0.00011 41.7 0.0 51 32-82 328-403 (416)
138 PF07975 C1_4: TFIIH C1-like d 48.1 8.2 0.00018 28.9 0.7 42 35-76 2-50 (51)
139 KOG2789 Putative Zn-finger pro 47.8 7.6 0.00016 40.4 0.7 33 33-66 75-107 (482)
140 KOG3799 Rab3 effector RIM1 and 47.3 5.8 0.00012 35.6 -0.2 28 31-66 64-92 (169)
141 KOG4185 Predicted E3 ubiquitin 46.6 3.1 6.8E-05 40.7 -2.2 48 31-78 206-265 (296)
142 PF04216 FdhE: Protein involve 45.5 2.5 5.5E-05 41.6 -3.1 48 30-78 170-220 (290)
143 PLN02195 cellulose synthase A 45.2 22 0.00048 41.1 3.8 50 31-81 5-60 (977)
144 PF13901 DUF4206: Domain of un 42.5 17 0.00036 34.2 2.1 40 32-76 152-196 (202)
145 COG5627 MMS21 DNA repair prote 42.4 25 0.00053 34.5 3.2 68 31-100 188-259 (275)
146 TIGR00622 ssl1 transcription f 41.7 20 0.00044 31.1 2.2 45 32-76 55-110 (112)
147 PF10497 zf-4CXXC_R1: Zinc-fin 38.2 34 0.00074 29.1 3.1 50 28-78 3-70 (105)
148 KOG3005 GIY-YIG type nuclease 37.6 19 0.0004 35.8 1.6 49 33-81 183-244 (276)
149 smart00249 PHD PHD zinc finger 36.7 19 0.00042 24.2 1.2 31 34-64 1-31 (47)
150 PLN02915 cellulose synthase A 36.4 26 0.00056 40.8 2.6 50 31-80 14-68 (1044)
151 PF01363 FYVE: FYVE zinc finge 36.1 15 0.00033 28.0 0.6 37 29-65 6-43 (69)
152 PF06844 DUF1244: Protein of u 35.3 23 0.00049 28.1 1.4 13 56-68 11-23 (68)
153 PF06906 DUF1272: Protein of u 34.0 68 0.0015 24.7 3.7 46 33-82 6-54 (57)
154 KOG1356 Putative transcription 33.8 14 0.0003 41.9 0.0 48 32-80 229-282 (889)
155 PF04710 Pellino: Pellino; In 31.2 16 0.00035 38.1 0.0 47 32-81 277-340 (416)
156 KOG3337 Protein similar to pre 31.1 16 0.00034 34.2 -0.1 28 274-301 135-163 (201)
157 PF02318 FYVE_2: FYVE-type zin 30.5 31 0.00066 29.6 1.6 47 30-77 52-102 (118)
158 KOG2231 Predicted E3 ubiquitin 29.4 37 0.00079 37.8 2.3 43 34-79 2-51 (669)
159 smart00064 FYVE Protein presen 28.6 48 0.001 25.1 2.3 37 30-66 8-45 (68)
160 smart00647 IBR In Between Ring 27.3 13 0.00027 27.5 -1.2 32 34-65 20-58 (64)
161 KOG1815 Predicted E3 ubiquitin 27.2 18 0.00039 37.9 -0.4 38 32-69 226-268 (444)
162 KOG4218 Nuclear hormone recept 26.0 54 0.0012 33.9 2.7 16 27-42 10-25 (475)
163 PF00628 PHD: PHD-finger; Int 25.9 25 0.00054 25.0 0.2 43 34-76 1-49 (51)
164 TIGR01562 FdhE formate dehydro 25.7 18 0.00039 36.5 -0.7 46 32-78 184-233 (305)
165 cd07153 Fur_like Ferric uptake 25.4 20 0.00042 29.8 -0.5 32 305-336 16-49 (116)
166 PRK03564 formate dehydrogenase 25.2 20 0.00043 36.3 -0.5 46 31-77 186-234 (309)
167 PF09397 Ftsk_gamma: Ftsk gamm 25.1 31 0.00068 27.0 0.7 24 313-336 24-48 (65)
168 PF13240 zinc_ribbon_2: zinc-r 24.1 12 0.00025 23.4 -1.5 6 71-76 15-20 (23)
169 KOG3726 Uncharacterized conser 23.5 42 0.00091 37.4 1.5 40 33-75 655-695 (717)
170 KOG0956 PHD finger protein AF1 23.5 51 0.0011 36.9 2.1 28 50-77 43-70 (900)
171 PF13771 zf-HC5HC2H: PHD-like 23.5 26 0.00057 27.9 -0.0 40 23-64 27-68 (90)
172 COG3813 Uncharacterized protei 22.7 98 0.0021 25.1 3.0 48 34-84 7-56 (84)
173 smart00132 LIM Zinc-binding do 21.7 77 0.0017 20.4 2.0 37 34-79 1-37 (39)
174 PLN02248 cellulose synthase-li 21.4 69 0.0015 37.7 2.7 32 52-83 149-180 (1135)
175 KOG2979 Protein involved in DN 21.3 53 0.0012 32.5 1.5 45 32-78 176-222 (262)
176 COG2824 PhnA Uncharacterized Z 20.9 36 0.00078 29.4 0.3 11 33-43 4-14 (112)
177 KOG0006 E3 ubiquitin-protein l 20.9 79 0.0017 32.4 2.7 33 31-66 220-254 (446)
178 cd00065 FYVE FYVE domain; Zinc 20.8 68 0.0015 23.2 1.7 34 33-66 3-37 (57)
179 PF10146 zf-C4H2: Zinc finger- 20.7 75 0.0016 30.8 2.4 29 56-84 195-223 (230)
180 PF05605 zf-Di19: Drought indu 20.6 52 0.0011 24.1 1.0 37 32-78 2-40 (54)
181 smart00843 Ftsk_gamma This dom 20.4 49 0.0011 25.8 0.9 24 313-336 23-47 (63)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.29 E-value=1.4e-12 Score=93.13 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.4
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
++|+||++.|...+.++.++|+|.||..||..|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999997777888899999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.4e-11 Score=119.63 Aligned_cols=49 Identities=35% Similarity=0.990 Sum_probs=44.5
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHhcC-CCCCCCcccCCC
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL 81 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~-~sCP~CR~~i~~ 81 (386)
++|.||+|.|..++.+++|||+|.||..||..|+... ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999999999999999999999999999876 569999997654
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.04 E-value=1.6e-10 Score=110.68 Aligned_cols=54 Identities=28% Similarity=0.810 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccccCCCC-----eeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 27 IQDSCDDACSICLEEFSESDP-----STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 27 iqde~d~~C~ICle~f~~~d~-----~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
.+...+.+|+||++.+.+... ..+++|+|.||..||..|+..+.+||+||..+.
T Consensus 169 ~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 169 YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 344567899999998743221 345789999999999999999999999999875
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-10 Score=110.02 Aligned_cols=55 Identities=31% Similarity=0.695 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcC---CCCCCCcccCCCCCcch
Q 016624 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDATS 86 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~---~sCP~CR~~i~~~d~~~ 86 (386)
+.....|.||||.- ..++++.|||.|||.||.+|++.+ +.||+|+..+..+.+.+
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 45578999999997 336777999999999999999853 57999999988765443
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=2.1e-10 Score=106.45 Aligned_cols=55 Identities=31% Similarity=0.746 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhc----------------CCCCCCCcccCCCCCc
Q 016624 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDA 84 (386)
Q Consensus 27 iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~----------------~~sCP~CR~~i~~~d~ 84 (386)
++...+.+|+||++.+. + +++++|+|.||+.||..|+.. ...||+||..+...++
T Consensus 13 ~~~~~~~~CpICld~~~--d-PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 13 VDSGGDFDCNICLDQVR--D-PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred ccCCCccCCccCCCcCC--C-cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 34445789999999983 3 566799999999999999852 2479999999986554
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.5e-10 Score=110.92 Aligned_cols=55 Identities=31% Similarity=0.827 Sum_probs=47.2
Q ss_pred CCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 26 ~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
....+.+..|.|||+.. ..+..++|||.||+.||..|+..+..||+||..+.+..
T Consensus 233 ~~i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred ccCCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 33455678999999996 44788899999999999999999999999999987654
No 7
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.98 E-value=3.9e-10 Score=89.46 Aligned_cols=45 Identities=36% Similarity=1.006 Sum_probs=36.1
Q ss_pred CcccccccccccC----------CCCeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 32 DDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 32 d~~C~ICle~f~~----------~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
++.|+||++.|.+ .-++.+.+|+|.||..||..|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4559999999932 12345578999999999999999999999997
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=1.1e-09 Score=82.83 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=48.0
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHH
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~ 92 (386)
+..|+||.+.+ .+ +.+++|||.||..||..|++.+..||+|+..+...++..+..+..
T Consensus 1 ~~~Cpi~~~~~--~~-Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVM--KD-PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcC--CC-CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence 46899999998 34 566799999999999999998889999999998777666544443
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=8.5e-10 Score=76.96 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.4
Q ss_pred cccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~C 75 (386)
|+||++.+ .+++++++|||.||..||..|++....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998 4555789999999999999999998899998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.6e-09 Score=79.36 Aligned_cols=47 Identities=34% Similarity=0.798 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCCeeecccCCc-ccHHHHHHHHhcCCCCCCCcccCC
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~-FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
++..|.||++... .+.+++|+|. ||..|+..|++....||+||++|.
T Consensus 1 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3678999999973 3778899999 999999999999999999999875
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.84 E-value=2.2e-09 Score=76.56 Aligned_cols=38 Identities=32% Similarity=0.854 Sum_probs=28.8
Q ss_pred cccccccccCCCCeeecccCCcccHHHHHHHHhcC----CCCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~----~sCP~C 75 (386)
|+||+++|.+ ++.++|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999933 6778999999999999999753 469988
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.6e-09 Score=99.04 Aligned_cols=53 Identities=34% Similarity=0.709 Sum_probs=44.6
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCc
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~ 84 (386)
.-..|+|||+.+....+ .-+.|||+||..||...++....||+|++.|..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 34689999999955333 447999999999999999999999999998887654
No 13
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=4.2e-09 Score=107.60 Aligned_cols=59 Identities=25% Similarity=0.537 Sum_probs=48.7
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHHH
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~v 93 (386)
++.|+||++.|. + +++++|+|.||..||..|+.....||+|+..+....+..+..+..+
T Consensus 26 ~l~C~IC~d~~~--~-PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 26 SLRCHICKDFFD--V-PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred ccCCCcCchhhh--C-ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 789999999993 3 4578999999999999999988899999999887666555554443
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.77 E-value=6.2e-09 Score=72.03 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=37.6
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhc-CCCCCCCcccC
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i 79 (386)
.|+||++.+ .+...+++|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 455666779999999999999987 67899998754
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.5e-09 Score=102.87 Aligned_cols=50 Identities=36% Similarity=0.878 Sum_probs=45.1
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHh-cCCCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq-~~~sCP~CR~~i~~ 81 (386)
..+|.||++.|...+...++||.|.||..|+..|+. .+..||+||..+++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 378999999998778889999999999999999998 57789999998864
No 16
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.3e-09 Score=105.29 Aligned_cols=53 Identities=30% Similarity=0.877 Sum_probs=43.9
Q ss_pred CCCCccccccccccc-CC---------CCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 29 DSCDDACSICLEEFS-ES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 29 de~d~~C~ICle~f~-~~---------d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
.+.|..|.||+|.+- .+ ..++.++|||.||.+|+.-|++++++||+||.++..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 556899999999952 21 124678999999999999999999999999998643
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=6.6e-09 Score=98.11 Aligned_cols=60 Identities=25% Similarity=0.541 Sum_probs=45.5
Q ss_pred hhhcCCCCCCCcccccccccccCC------CCeeecccCCcccHHHHHHHHhcC------CCCCCCcccCCC
Q 016624 22 FVEGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISL 81 (386)
Q Consensus 22 ~v~~~iqde~d~~C~ICle~f~~~------d~~~vlpCgH~FC~~CI~~Wlq~~------~sCP~CR~~i~~ 81 (386)
.-+...+...|.+|+||+|.+..+ -...+.+|+|.||..||..|...+ ..||+||..+..
T Consensus 160 ~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 160 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 344555667789999999986322 124567999999999999999753 359999998764
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.72 E-value=9.6e-09 Score=83.85 Aligned_cols=51 Identities=43% Similarity=1.023 Sum_probs=40.2
Q ss_pred Cccccccccccc--------CC--CCeeecccCCcccHHHHHHHHhc---CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFS--------ES--DPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~--------~~--d~~~vlpCgH~FC~~CI~~Wlq~---~~sCP~CR~~i~~~ 82 (386)
|+.|.||...|. ++ -++..-.|+|.||.+||.+|+.. +..||+||+++..+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 788999988884 11 23455689999999999999975 46899999987654
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.67 E-value=7.7e-09 Score=102.47 Aligned_cols=66 Identities=26% Similarity=0.620 Sum_probs=55.4
Q ss_pred cCCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHHHHH
Q 016624 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (386)
Q Consensus 25 ~~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~ve~ 95 (386)
.++++ -+.|.||.++|.. +.+++|+|.||.-||..+|..+..||.|+.++.+.++..+.+++.+.+
T Consensus 18 k~lD~--lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 18 KTLDD--LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred hhhHH--HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence 34444 6789999999933 677799999999999999999999999999999988888777666543
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.67 E-value=1.5e-08 Score=70.88 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=33.5
Q ss_pred cccccccccCCCCeeecccCCcccHHHHHHHHh--cCCCCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq--~~~sCP~C 75 (386)
|+||++.+ .++..+++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998 34445899999999999999998 45679998
No 21
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.5e-09 Score=106.34 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=42.0
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc-CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~~ 82 (386)
++.|+|||+++ ...+++..|.|.||..||..-+.. .+.||.||+.+..+
T Consensus 43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 78999999999 556778899999999999888764 67899999987653
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=3.3e-08 Score=70.79 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.5
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
.|+||++.|.+...+.+++|+|.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567889999999999999999866778999985
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-08 Score=104.04 Aligned_cols=54 Identities=37% Similarity=0.704 Sum_probs=44.3
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC-----CCCCCCcccCCCCCcchHH
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATSQE 88 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~-----~sCP~CR~~i~~~d~~~~~ 88 (386)
+..|||||+.. ..+..+.|||+||+.||..+|... ..||+||..|..+++.+..
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 78999999996 335566799999999999998653 4699999999998776543
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.58 E-value=6.1e-08 Score=76.68 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=47.0
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHHHHHhc-CCCCCCCcccCCCCCcchHHHHHHHHH
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQ 95 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~~d~~~~~lle~ve~ 95 (386)
+++.|+||.+.|.+ +++++|||.|+..||..|+.. ...||+|+..+...++.++..+.....
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~ 65 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIE 65 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHH
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHH
Confidence 47899999999933 667799999999999999998 789999999999988888776655443
No 25
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.4e-08 Score=102.79 Aligned_cols=52 Identities=33% Similarity=0.780 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCC--eeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 29 DSCDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~--~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
...+..|+||+|.+..... ++.++|+|.||..|+..|+++..+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3448899999999844322 677899999999999999999999999999544
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.45 E-value=1.8e-07 Score=62.39 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=32.7
Q ss_pred cccccccccCCCCeeecccCCcccHHHHHHHHh-cCCCCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq-~~~sCP~C 75 (386)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999994 4467789999999999999998 56679987
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.7e-08 Score=92.43 Aligned_cols=51 Identities=35% Similarity=0.820 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCCeeecccCCcccHHHHHH-HHhcCCC-CCCCcccCCCCC
Q 016624 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKD 83 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~-Wlq~~~s-CP~CR~~i~~~d 83 (386)
..|..|.||++.. ..+..++|||.||+.||.. |..++.. ||+||+...++.
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4578899999996 3467789999999999999 9887776 999999887664
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=4.2e-07 Score=65.37 Aligned_cols=38 Identities=42% Similarity=0.960 Sum_probs=23.0
Q ss_pred ccccccccc-CCCCeeecccCCcccHHHHHHHHhcC----CCCC
Q 016624 35 CSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRS----SQCP 73 (386)
Q Consensus 35 C~ICle~f~-~~d~~~vlpCgH~FC~~CI~~Wlq~~----~sCP 73 (386)
|+||++ |. +.+++++|+|||.||..||..|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 63 44568889999999999999999853 3576
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-07 Score=86.02 Aligned_cols=45 Identities=31% Similarity=0.778 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
.++..|+||++.|. ++ .+++|+|.||..||..|+.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~--~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR--EP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh--cC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34899999999993 44 88899999999999999985567999995
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=4.8e-07 Score=89.68 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=41.0
Q ss_pred CCccccccccc--ccCCCCeeecccCCcccHHHHHHHHh-cCCCCCCCcccCCCCCcchH
Q 016624 31 CDDACSICLEE--FSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDATSQ 87 (386)
Q Consensus 31 ~d~~C~ICle~--f~~~d~~~vlpCgH~FC~~CI~~Wlq-~~~sCP~CR~~i~~~d~~~~ 87 (386)
++..||||... +.+.-...+.+|||.||..||..++. ....||.|+..+....+..+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 36789999995 32211123337999999999999664 45689999999887665443
No 31
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.19 E-value=5.5e-07 Score=69.88 Aligned_cols=58 Identities=28% Similarity=0.693 Sum_probs=29.8
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHHH
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~v 93 (386)
-+.|++|.+.| ++++.+..|.|.||..||...+. ..||+|..+...+|...+..+..+
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence 46799999999 66777889999999999977543 359999999988888877766543
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.18 E-value=8.4e-07 Score=86.75 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
-+.|-||-+.|.. +..++|+|.||.-||..+|..+..||+||....+
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5689999999844 5678999999999999999999999999998654
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=8.8e-07 Score=70.85 Aligned_cols=51 Identities=41% Similarity=0.961 Sum_probs=38.4
Q ss_pred Cccccccccccc--------CC-C-CeeecccCCcccHHHHHHHHhc---CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFS--------ES-D-PSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~--------~~-d-~~~vlpCgH~FC~~CI~~Wlq~---~~sCP~CR~~i~~~ 82 (386)
+.+|.||.-.|. ++ + |...-.|.|.||..||.+|+.. +..||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 558999988873 11 2 2334579999999999999964 45799999987643
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.02 E-value=4.1e-06 Score=67.60 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.5
Q ss_pred eeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 48 ~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
+..-.|.|.||..||.+||..+..||+||+++...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 344679999999999999999999999999987654
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.79 E-value=0.00018 Score=73.32 Aligned_cols=48 Identities=25% Similarity=0.666 Sum_probs=40.6
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhc--CCCCCCCcccCCCCCc
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~--~~sCP~CR~~i~~~d~ 84 (386)
-|.||-|.= ..+.+-+|||..|..|+..|... .+.||.||..|.....
T Consensus 371 LCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 599999984 44888899999999999999854 5789999999986553
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.5e-05 Score=80.54 Aligned_cols=58 Identities=34% Similarity=0.823 Sum_probs=44.1
Q ss_pred cCCCCCCCcccccccccccCCC-----CeeecccCCcccHHHHHHHHh--c-----CCCCCCCcccCCCC
Q 016624 25 GGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (386)
Q Consensus 25 ~~iqde~d~~C~ICle~f~~~d-----~~~vlpCgH~FC~~CI~~Wlq--~-----~~sCP~CR~~i~~~ 82 (386)
...+...|.+|.||++.+.... --.+++|.|.||..||..|-+ + .+.||.||......
T Consensus 154 ~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 154 FALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 3445677999999999985433 123477999999999999984 3 36799999876644
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.69 E-value=5.8e-06 Score=65.22 Aligned_cols=50 Identities=36% Similarity=0.809 Sum_probs=24.6
Q ss_pred CcccccccccccCCC-Ce-ee---cccCCcccHHHHHHHHhc----C-------CCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESD-PS-TV---TSCKHEFHLQCVLEWCQR----S-------SQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d-~~-~v---lpCgH~FC~~CI~~Wlq~----~-------~sCP~CR~~i~~ 81 (386)
+..|.||+..+.+.+ .+ .+ ..|+..||..||.+|+.. + ..||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 678999999875222 22 22 378999999999999963 1 149999998764
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1e-05 Score=78.56 Aligned_cols=55 Identities=31% Similarity=0.784 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccCCC-------CeeecccCCcccHHHHHHHHh--cCCCCCCCcccCCCC
Q 016624 28 QDSCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d-------~~~vlpCgH~FC~~CI~~Wlq--~~~sCP~CR~~i~~~ 82 (386)
+..+|..|.||-..+.... ....+.|+|.||..||.-|+. ++++||.|++.+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3445889999988774322 346789999999999999985 567899999877543
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.3e-05 Score=81.43 Aligned_cols=50 Identities=32% Similarity=0.835 Sum_probs=38.7
Q ss_pred CcccccccccccCC---CC-----------eeecccCCcccHHHHHHHHhc-CCCCCCCcccCCC
Q 016624 32 DDACSICLEEFSES---DP-----------STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~---d~-----------~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~ 81 (386)
...|+||+..+... .+ -.++||.|.||..|++.|... +-.||+||.+++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 56899999986311 11 124699999999999999995 5589999998864
No 40
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.1e-05 Score=66.35 Aligned_cols=51 Identities=25% Similarity=0.676 Sum_probs=39.1
Q ss_pred CCccccccccccc------------CCCC--eeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 31 CDDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 31 ~d~~C~ICle~f~------------~~d~--~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
.-+.|.||..-+. ..+. +..-.|.|.||..||.+|++.+..||+|.+.+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3568999987542 1111 3346899999999999999999999999887654
No 41
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.60 E-value=1.8e-05 Score=78.77 Aligned_cols=49 Identities=29% Similarity=0.645 Sum_probs=43.2
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~ 82 (386)
-.+|.+|-.+| .+..+++.|-|.||..||..++.....||+|...+...
T Consensus 15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 56899999999 56677889999999999999999999999998877543
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.57 E-value=7e-05 Score=55.18 Aligned_cols=42 Identities=29% Similarity=0.769 Sum_probs=32.4
Q ss_pred ccccccccccCCCCeeecccC-----CcccHHHHHHHHhcC--CCCCCCc
Q 016624 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCg-----H~FC~~CI~~Wlq~~--~sCP~CR 76 (386)
.|-||++... .+.+.+.||. |.||..||..|+..+ ..||+|.
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998432 3445677885 889999999999654 4899994
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4e-05 Score=75.49 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=40.2
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC-CCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~-~sCP~CR~~i~~~ 82 (386)
+.+|+||+... ..++.+.|+|.||+-||.--.+.. ..|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 57899999995 556788999999999999776654 5699999998754
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.5e-05 Score=84.64 Aligned_cols=51 Identities=25% Similarity=0.620 Sum_probs=42.5
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc-CCCCCCCcccCCCCCcc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT 85 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~~d~~ 85 (386)
-+.|+.|-.-+++ .+++.|+|.||..|+...+.. ...||.|...|..-|+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 5799999987744 677799999999999999875 56799999998876643
No 45
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.52 E-value=2.5e-05 Score=86.00 Aligned_cols=49 Identities=33% Similarity=0.982 Sum_probs=38.4
Q ss_pred Cccccccccccc--CCC-C-eeecccCCcccHHHHHHHHhcC--CCCCCCcccCC
Q 016624 32 DDACSICLEEFS--ESD-P-STVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~--~~d-~-~~vlpCgH~FC~~CI~~Wlq~~--~sCP~CR~~i~ 80 (386)
-.+|+||+..+. +.. | -++..|+|.||..|+..|++.. ..||+||..+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 678999999873 111 1 2456799999999999999864 67999998765
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=5.3e-05 Score=77.89 Aligned_cols=56 Identities=25% Similarity=0.644 Sum_probs=47.2
Q ss_pred hhcCCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 23 v~~~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
..++.+...+..|.||+..| .++++++|||.||..||.+-+.....||.||..+..
T Consensus 75 ~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 44555556799999999998 346777999999999999988888899999999875
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=2.9e-05 Score=58.58 Aligned_cols=48 Identities=31% Similarity=0.702 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCCCeeecccCC-cccHHHHHHHHh-cCCCCCCCcccCC
Q 016624 30 SCDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vlpCgH-~FC~~CI~~Wlq-~~~sCP~CR~~i~ 80 (386)
+.+++|.||+|.-.+ .++.-||| -.|+.|-.+.++ .+..||+||.+|.
T Consensus 5 ~~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 346899999998533 45567999 679999877666 6789999999864
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.46 E-value=2.6e-05 Score=84.55 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
+......|+||+..+.+.......+|+|.||..||..|.+-..+||+||..|..
T Consensus 119 ~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 119 QTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 334566899999988655445557899999999999999999999999998754
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0001 Score=74.10 Aligned_cols=47 Identities=32% Similarity=0.771 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCCeeecccCC-cccHHHHHHHHhcCCCCCCCcccCC
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH-~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
.-.+|.||+....+ ..++||.| -.|..|.+..--.++.||+||+++.
T Consensus 289 ~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 35689999999743 68889999 6799999887777889999999875
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=6e-05 Score=77.59 Aligned_cols=47 Identities=34% Similarity=0.843 Sum_probs=37.1
Q ss_pred CcccccccccccCCCC-eeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~-~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
-.+||||||-+..... +..+.|.|.||..|+..|+ ..+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 5689999999843322 3456899999999999997 457999998665
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.18 E-value=0.0001 Score=72.75 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=42.3
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc-----------------------CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-----------------------~~sCP~CR~~i~~~ 82 (386)
...|.|||.-|-.++..+++.|.|.||+.|+.++|.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4689999999987777899999999999999987632 12599999988754
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00028 Score=71.73 Aligned_cols=48 Identities=25% Similarity=0.787 Sum_probs=33.6
Q ss_pred cccccccccccCCCCee-ecccCCcccHHHHHHHHhcC---CCCCCCcccCC
Q 016624 33 DACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQRS---SQCPMCWQPIS 80 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~-vlpCgH~FC~~CI~~Wlq~~---~sCP~CR~~i~ 80 (386)
..|.||.+.+-...... +-.|||.||..|+..|+..- ..||+|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 47999955542211222 23499999999999999864 46999994443
No 53
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00042 Score=70.84 Aligned_cols=54 Identities=28% Similarity=0.802 Sum_probs=40.4
Q ss_pred CCcccccccccccCC-C-CeeecccCCcccHHHHHHHHhc--CCCCCCCcccCCCCCc
Q 016624 31 CDDACSICLEEFSES-D-PSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (386)
Q Consensus 31 ~d~~C~ICle~f~~~-d-~~~vlpCgH~FC~~CI~~Wlq~--~~sCP~CR~~i~~~d~ 84 (386)
+-.+||||++.+... + .+..+.|+|.|..+||..|+.+ ...||.|..+-...+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence 457899999987532 2 2455899999999999999953 3479999766544443
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.05 E-value=0.00026 Score=72.79 Aligned_cols=53 Identities=30% Similarity=0.720 Sum_probs=44.1
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcc
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~ 85 (386)
++..|+||...+ .+++..+.|+|.||..|+..|+..+..||.|+..+......
T Consensus 20 ~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 20 ENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 378999999999 44544469999999999999999999999998887655433
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.03 E-value=0.00029 Score=53.62 Aligned_cols=41 Identities=37% Similarity=0.829 Sum_probs=29.5
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc--CCCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~--~~sCP~ 74 (386)
...|||.+..| .+|++-..|+|.|....|..|++. ...||+
T Consensus 11 ~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 68999999999 567777899999999999999944 456998
No 56
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00047 Score=67.95 Aligned_cols=61 Identities=30% Similarity=0.472 Sum_probs=48.1
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHHHHH
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~ve~ 95 (386)
.+.|-||...|.. ++++.|+|.||..|...-++....|++|-+.+........+|+..+..
T Consensus 241 Pf~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~ 301 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKL 301 (313)
T ss_pred Ccccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHh
Confidence 3469999999933 677899999999999999999999999988877655555555554443
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.88 E-value=0.00043 Score=64.90 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=39.5
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
.+.|.||-..|.. ++++.|||.||..|...-.+....|-+|-+...
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 5689999999933 677899999999999998889999999976544
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.85 E-value=0.00092 Score=76.53 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=50.8
Q ss_pred CCCCccchhhhHhhhhcCCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcC----------CCCCCCccc
Q 016624 9 GKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQP 78 (386)
Q Consensus 9 ~~~~~~~l~s~aa~v~~~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~----------~sCP~CR~~ 78 (386)
++.-+.|+...-...+...|| .|+.|-||+.+-....|...+.|+|.||++|....++.. -.||+|+.+
T Consensus 3464 vkNEE~CLPCl~Cdks~tkQD-~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3464 VKNEEHCLPCLHCDKSATKQD-ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred ccchhhcccccccChhhhhcc-cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 344455555544333333343 478899999876555677789999999999998877653 269999998
Q ss_pred CCC
Q 016624 79 ISL 81 (386)
Q Consensus 79 i~~ 81 (386)
|..
T Consensus 3543 InH 3545 (3738)
T KOG1428|consen 3543 INH 3545 (3738)
T ss_pred hhh
Confidence 864
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0017 Score=62.08 Aligned_cols=54 Identities=28% Similarity=0.567 Sum_probs=43.4
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc--------CCCCCCCcccCCCCCcch
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATS 86 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~--------~~sCP~CR~~i~~~d~~~ 86 (386)
+..|..|-..+..++.++ +.|-|.||++|+.+|... ...||.|.++|.+.....
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence 668999999997777655 589999999999999754 357999999887654433
No 60
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0011 Score=64.79 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=40.1
Q ss_pred CCCCcccccccccccCCCCeeecccCCcccHHHHHHHHh--cCCCCCCCcccCC
Q 016624 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq--~~~sCP~CR~~i~ 80 (386)
...+.+|++|-+.- ..|.+..+|+|.||..||..-+. ...+||.|-....
T Consensus 236 ~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 44588999999985 45667778999999999988765 3578999977654
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00076 Score=67.97 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 26 ~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
..-+.+|..|+||+.-- ...+..||+|.-|+.||.+.+-..+.|..|+..+..
T Consensus 416 ~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 34567799999999863 234667999999999999999999999999988764
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.37 E-value=0.0018 Score=68.20 Aligned_cols=53 Identities=23% Similarity=0.644 Sum_probs=42.0
Q ss_pred CCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhc-----CCCCCCCcccCCCCC
Q 016624 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLKD 83 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~-----~~sCP~CR~~i~~~d 83 (386)
++..+.+|.+|-+.- +......|.|.||..||.+++.. ..+||.|-..+....
T Consensus 532 enk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 344478999999996 33567799999999999999864 357999988776553
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.30 E-value=0.0034 Score=62.24 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=40.9
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHh-cCCCCCCC-cccCCCCCcch
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC-WQPISLKDATS 86 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq-~~~sCP~C-R~~i~~~d~~~ 86 (386)
+.|+.|--++ .+++....|+|.||..||...|. .-+.||.| |+.+....+.+
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~p 328 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTP 328 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCc
Confidence 8999999998 66777778999999999997775 56789999 55555544443
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0075 Score=62.00 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=37.2
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC--------CCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--------SQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~--------~sCP~CR~~ 78 (386)
-..|.||++...-......++|+|.||+.|+..++.-. -.||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 34799999998655678889999999999999998531 258877554
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0083 Score=58.11 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=45.6
Q ss_pred CCcccccccccccCCCCe-eecccCCcccHHHHHHHHhcCCCCCCCcccCCCCCc
Q 016624 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~-~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~ 84 (386)
....||||.+.|....+. ++-+|||+||..|...++..-..||+|-.++...|.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 356899999999765554 446899999999999999999999999998887764
No 66
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.69 E-value=0.0036 Score=63.96 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCCC-eeecccCCcccHHHHHHHHhcC--CCCCCCccc
Q 016624 29 DSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~-~~vlpCgH~FC~~CI~~Wlq~~--~sCP~CR~~ 78 (386)
.+-++.|..|-+.+..++. ...+||.|+||..|+.+++.++ .+||.||+-
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3447899999999854443 4558999999999999999765 479999843
No 67
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.011 Score=54.71 Aligned_cols=51 Identities=31% Similarity=0.738 Sum_probs=36.8
Q ss_pred CcccccccccccCCCCe----eecccCCcccHHHHHHHHhcC-----------CCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPS----TVTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~----~vlpCgH~FC~~CI~~Wlq~~-----------~sCP~CR~~i~~~ 82 (386)
-..|.||+.+-.++..+ --..|+..||.-|+..|++.- ..||+|..++..+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 45688888764333221 125799999999999999741 2599999888765
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.49 E-value=0.011 Score=43.61 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=22.4
Q ss_pred cccccccccCCCCeee-cccCCcccHHHHHHHHh-cCCCCCCCcccC
Q 016624 35 CSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (386)
Q Consensus 35 C~ICle~f~~~d~~~v-lpCgH~FC~~CI~~Wlq-~~~sCP~CR~~i 79 (386)
|++|.+.+...+.-.. =+|++.+|..|+...+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7999999843332222 36789999999988876 477899999864
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.014 Score=58.51 Aligned_cols=54 Identities=19% Similarity=0.525 Sum_probs=41.3
Q ss_pred cCCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 25 ~~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
+.....+...|+||+... .++..+.--|-+||+.||-.++..++.||+--.++.
T Consensus 293 ~e~l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred cccCCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 334444577899999986 344445556999999999999999999998766554
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.25 E-value=0.017 Score=58.45 Aligned_cols=52 Identities=21% Similarity=0.465 Sum_probs=41.9
Q ss_pred cCCCCCCCcccccccccccCCCCeeecccCCcccHHHHHHH--HhcCCCCCCCcccC
Q 016624 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPI 79 (386)
Q Consensus 25 ~~iqde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~W--lq~~~sCP~CR~~i 79 (386)
...+|+++..|-||.+.+. ...++||+|..|.-|..+. |...+.||+||..+
T Consensus 54 addtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 54 ADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4457778889999999873 3678999999999997764 45678999999765
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.011 Score=59.80 Aligned_cols=47 Identities=34% Similarity=0.675 Sum_probs=34.3
Q ss_pred CCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
+...+-|.||++...+ ...++|||..| |..-. ++-..||+||+.|..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 3446789999999733 56679999877 76543 344569999998753
No 72
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.004 Score=61.50 Aligned_cols=42 Identities=29% Similarity=0.672 Sum_probs=32.8
Q ss_pred CcccccccccccCCCCeeecccCC-cccHHHHHHHHhcCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH-~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
+.-|.||++.. .+ ...|+||| .-|.+|-.. -..||+||+.|.
T Consensus 300 ~~LC~ICmDaP--~D-CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP--RD-CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC--cc-eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 66799999996 33 57789999 678888644 348999998754
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.027 Score=55.21 Aligned_cols=50 Identities=28% Similarity=0.627 Sum_probs=39.7
Q ss_pred CcccccccccccCCC---CeeecccCCcccHHHHHHHHhcC-CCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d---~~~vlpCgH~FC~~CI~~Wlq~~-~sCP~CR~~i~~ 81 (386)
-..|-||-++|...+ .++++.|||.||..|+...+... -.||.||..+..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 367999999997543 36788999999999998877654 469999998643
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.75 E-value=0.029 Score=54.57 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCC-eeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~-~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
.....|||+...|..... +.+.+|||+|+..||.+.- ....||+|-.++...|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 446789999999944333 4557999999999999973 4567999999888655
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.68 E-value=0.011 Score=56.95 Aligned_cols=45 Identities=31% Similarity=0.723 Sum_probs=33.8
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
.|.-|..--. .++-.++.|.|+||..|...-. ...||+|++.+..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 5777776643 5777899999999999964321 2289999998754
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.66 E-value=0.022 Score=57.48 Aligned_cols=53 Identities=21% Similarity=0.516 Sum_probs=37.0
Q ss_pred CCcccccccccccCCCCeee-cccCCcccHHHHHHHHhc-CCCCCCCcccCCCCC
Q 016624 31 CDDACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~v-lpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~~d 83 (386)
+|+.||.|++.+...+.-.. -+||...|.-|+...-+. ...||-||..+...+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 35669999999854443222 378888888886654443 568999998776544
No 77
>PHA03096 p28-like protein; Provisional
Probab=94.33 E-value=0.024 Score=56.18 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=32.5
Q ss_pred cccccccccccCCC-----CeeecccCCcccHHHHHHHHhcC---CCCCCCcc
Q 016624 33 DACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (386)
Q Consensus 33 ~~C~ICle~f~~~d-----~~~vlpCgH~FC~~CI~~Wlq~~---~sCP~CR~ 77 (386)
..|.||++...... -..+..|.|.||..||..|-... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 68999999875321 13456899999999999998643 34555544
No 78
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.22 E-value=0.024 Score=50.33 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCCeeecccC------CcccHHHHHHHHhcCCCCCCCc
Q 016624 31 CDDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCg------H~FC~~CI~~Wlq~~~sCP~CR 76 (386)
...+|.||++.+...+.++.+.|+ |.||..|+.+|-.....=|.=|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 367999999998653345555665 8999999999965444444443
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.24 E-value=0.053 Score=53.54 Aligned_cols=53 Identities=28% Similarity=0.479 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCC-CeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d-~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
+...+..||||.+.+.... .+.+++|+|..|..|+.+.......||+|.+ +..
T Consensus 154 e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 154 ERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred hhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 3344666999999875443 3667899999999999999888899999977 443
No 80
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.22 E-value=0.032 Score=41.12 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=25.7
Q ss_pred ccccccccccCCCCeeecccC-CcccHHHHHHHHhcCCCCCCCcccCCCC
Q 016624 34 ACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCg-H~FC~~CI~~Wlq~~~sCP~CR~~i~~~ 82 (386)
.|--|+-.. -.+..|. |..|..|+...+.....||+|+.+++.+
T Consensus 4 nCKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 466677654 1233676 9999999999999999999999988753
No 81
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.032 Score=51.11 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=26.0
Q ss_pred CCcccccccccccCCCCeeecccCCcccH
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHL 59 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~ 59 (386)
+..+|.||||+|..++.+..|||..+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 35689999999999999999999999986
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.75 E-value=0.044 Score=45.06 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=26.2
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHH
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~ 63 (386)
.+..|+||-..|.. ....+.||+|.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 36779999999954 445678999999999974
No 83
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.71 E-value=0.032 Score=64.19 Aligned_cols=45 Identities=31% Similarity=0.700 Sum_probs=37.8
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~ 78 (386)
-..|.||++.+.. .-.+..|+|.||..|+..|+..+..||+|+..
T Consensus 1153 ~~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 3489999999943 23455799999999999999999999999753
No 84
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.67 E-value=0.044 Score=60.24 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=38.0
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHhcC--CCCCCCcccCCCCC
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~--~sCP~CR~~i~~~d 83 (386)
..|.||++ . +.+.++.|+|.||..|+...++.. ..||.||..+..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 3 456778999999999999988653 36999998776543
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.45 E-value=0.077 Score=38.69 Aligned_cols=40 Identities=30% Similarity=0.901 Sum_probs=26.2
Q ss_pred cccccccccCCCCeeecccCC-----cccHHHHHHHHhc--CCCCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQR--SSQCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH-----~FC~~CI~~Wlq~--~~sCP~C 75 (386)
|-||++...+.. +.+.||.- ..|..||..|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999864433 45567763 6799999999974 4579887
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=0.077 Score=58.96 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=34.6
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~ 78 (386)
...|.+|--.+ .-|.+--.|+|.||.+|+. .....||.|+..
T Consensus 840 ~skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 45899999998 4566667899999999998 556789999773
No 87
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.07 E-value=0.09 Score=58.45 Aligned_cols=47 Identities=36% Similarity=0.893 Sum_probs=36.0
Q ss_pred CcccccccccccCCCCe-eecccCCcccHHHHHHHHhcC-------CCCCCCccc
Q 016624 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~-~vlpCgH~FC~~CI~~Wlq~~-------~sCP~CR~~ 78 (386)
-.+|.||++.+....++ ....|-|+||..||..|.... -.||.|...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 56899999998654442 335689999999999998642 259999743
No 88
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.13 Score=52.95 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=39.3
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC---CCCCCCcc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~---~sCP~CR~ 77 (386)
-+.|||=.+--.+.+||..+.|||+.+++-|.+..+.. ..||+|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 56899988887778899999999999999999988754 46999943
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.95 E-value=0.077 Score=38.09 Aligned_cols=41 Identities=24% Similarity=0.717 Sum_probs=22.5
Q ss_pred cccccccccCCCCeeecccCCcccHHHHHHHHhcCC--CCCCC
Q 016624 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMC 75 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~--sCP~C 75 (386)
|.+|.+++..+..-....|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888874432222236888999999999998755 79988
No 90
>PHA02862 5L protein; Provisional
Probab=91.92 E-value=0.13 Score=46.31 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=34.6
Q ss_pred CcccccccccccCCCCeeecccC-----CcccHHHHHHHHhcC--CCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCg-----H~FC~~CI~~Wlq~~--~sCP~CR~~i~~ 81 (386)
++.|=||++.-. +. .-||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 468999999852 22 34664 478999999999753 579999988754
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.069 Score=53.40 Aligned_cols=42 Identities=26% Similarity=0.617 Sum_probs=28.9
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccC
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i 79 (386)
.|--|--.+ ...-+..+|+|+||++|... ..-+.||.|-..+
T Consensus 92 fCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 465665554 22346689999999999643 3457899996654
No 92
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.60 E-value=0.11 Score=39.51 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=33.9
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
+..|-.|...- ....+++|+|..|..|+.- .+-+-||+|-.++...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 45676776663 3457789999999999643 34567999988876544
No 93
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=90.37 E-value=0.16 Score=52.98 Aligned_cols=34 Identities=15% Similarity=0.471 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCCCeeecccCCcccHHHHHHHH
Q 016624 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wl 66 (386)
++++.|+||...|. + +++++|+|..|..|...-+
T Consensus 2 eeelkc~vc~~f~~--e-piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR--E-PIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhcc--C-ceEeecccHHHHHHHHhhc
Confidence 46899999999993 3 6778999999999987554
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=90.05 E-value=0.28 Score=44.84 Aligned_cols=47 Identities=30% Similarity=0.739 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCCCeeecccCC-----cccHHHHHHHHhcC--CCCCCCcccCC
Q 016624 30 SCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPIS 80 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vlpCgH-----~FC~~CI~~Wlq~~--~sCP~CR~~i~ 80 (386)
..+..|=||.+... + -..||.. ..|..|+..|+..+ ..|++|..++.
T Consensus 6 ~~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34779999999852 2 2246654 55999999999754 57999988764
No 95
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.96 E-value=0.29 Score=48.93 Aligned_cols=56 Identities=25% Similarity=0.495 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCCeeeccc--CCcccHHHHHHHHhcCCCCCCCcccCCCCCcchHHHHHHHHHH
Q 016624 31 CDDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpC--gH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~~~~~lle~ve~e 96 (386)
+=++||||.+.+.+ ++. .| ||..|..|-. +....||.||.++... -...++.+...
T Consensus 47 ~lleCPvC~~~l~~---Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP---PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred hhccCchhhccCcc---cce-ecCCCcEehhhhhh---hhcccCCccccccccH---HHHHHHHHHHh
Confidence 35689999999833 332 56 6999999964 4567899999998832 33344554433
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.77 E-value=0.44 Score=43.53 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCcccccccccccCCCCeeeccc------------CC-cccHHHHHHHHh
Q 016624 31 CDDACSICLEEFSESDPSTVTSC------------KH-EFHLQCVLEWCQ 67 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpC------------gH-~FC~~CI~~Wlq 67 (386)
+|..|+||||.- .+ .++|-| +. .-|.-||.++.+
T Consensus 1 ed~~CpICme~P--HN-AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHP--HN-AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCC--Cc-eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 478999999984 23 233333 32 235678888764
No 97
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.65 Score=46.18 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=36.6
Q ss_pred ccccccccc--cCCCCeeecccCCcccHHHHHHHHhc-CCCCCCCcccCCCCCcc
Q 016624 34 ACSICLEEF--SESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT 85 (386)
Q Consensus 34 ~C~ICle~f--~~~d~~~vlpCgH~FC~~CI~~Wlq~-~~sCP~CR~~i~~~d~~ 85 (386)
.||+|.... .+.-...+-+|+|..|..|+...+.. ...||.|-..+....+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 599998753 12122344599999999999998865 56899997766544443
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.76 E-value=0.23 Score=54.50 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=37.7
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc---CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~---~~sCP~CR~~i~~~ 82 (386)
+.+|+||+..+.. +..+.|.|.||..|+..-+.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 7899999999843 366799999999998765543 45799998766543
No 99
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.44 E-value=0.49 Score=52.59 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCCCCcccccccccccCCCC----eeecccCCcccHHHHHHHHhc------CCCCCCCcccC
Q 016624 28 QDSCDDACSICLEEFSESDP----STVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~----~~vlpCgH~FC~~CI~~Wlq~------~~sCP~CR~~i 79 (386)
+-...+.|.||+-.+.+.+. ..+-.|+|.||..||..|..+ +..|++|..-|
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34446789999888855211 122359999999999999864 23577775533
No 100
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.26 E-value=0.42 Score=48.94 Aligned_cols=31 Identities=26% Similarity=0.815 Sum_probs=24.0
Q ss_pred cCCcccHHHHHHHHhcC-------------CCCCCCcccCCCCC
Q 016624 53 CKHEFHLQCVLEWCQRS-------------SQCPMCWQPISLKD 83 (386)
Q Consensus 53 CgH~FC~~CI~~Wlq~~-------------~sCP~CR~~i~~~d 83 (386)
|....|..|+-+|+..+ ..||+||+.+..-|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 45677999999998532 35999999987654
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.94 E-value=0.23 Score=48.27 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=35.2
Q ss_pred CCCCcccccccccccCCCCe--ee-cccCCcccHHHHHHHHhcC-CCCC--CCcccC
Q 016624 29 DSCDDACSICLEEFSESDPS--TV-TSCKHEFHLQCVLEWCQRS-SQCP--MCWQPI 79 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~~--~v-lpCgH~FC~~CI~~Wlq~~-~sCP--~CR~~i 79 (386)
+..|..||||..+---...+ .+ +.|-|..|-.|+.+.+... ..|| -|-+-+
T Consensus 7 ~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 34577999998763211222 23 3499999999999988764 5799 785544
No 102
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.64 E-value=0.11 Score=53.46 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=42.7
Q ss_pred CCcccccccccccCC-CCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCC
Q 016624 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (386)
Q Consensus 31 ~d~~C~ICle~f~~~-d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~ 82 (386)
-...|.||.+.|+.. +....+.|+|.+|..||..|+.....||.|+..+...
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 355799999998543 3355578999999999999999988999999887654
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=0.4 Score=49.48 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=26.9
Q ss_pred Ccccccccc-cccCCCCeeecccCCcccHHHHHHHHhc
Q 016624 32 DDACSICLE-EFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (386)
Q Consensus 32 d~~C~ICle-~f~~~d~~~vlpCgH~FC~~CI~~Wlq~ 68 (386)
..+|.||+. ......--.+..|+|.||..|+.+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 568999994 4322122236789999999999999874
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.41 E-value=0.91 Score=40.46 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=38.6
Q ss_pred CCCCCcccccccccccCCCCee-ecccCCcccHHHHHHHHhc---CCCCCCCcccCCCC
Q 016624 28 QDSCDDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~~~-vlpCgH~FC~~CI~~Wlq~---~~sCP~CR~~i~~~ 82 (386)
.|..--+|.||.|...+..-.. ---||-..|..|....|+. ...||+|+..+...
T Consensus 76 ~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred cCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4444458999999864321111 1259999999998887765 56899999887643
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=0.77 Score=45.04 Aligned_cols=52 Identities=21% Similarity=0.592 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCCCe-eecccC-----CcccHHHHHHHHhcC--------CCCCCCcccCCC
Q 016624 30 SCDDACSICLEEFSESDPS-TVTSCK-----HEFHLQCVLEWCQRS--------SQCPMCWQPISL 81 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~-~vlpCg-----H~FC~~CI~~Wlq~~--------~sCP~CR~~i~~ 81 (386)
+.|..|-||+..=++.... -+-||. |..|..||..|+..+ ..||.|+..+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3477899999985332111 234664 789999999999543 259999887543
No 106
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=82.84 E-value=1.4 Score=32.53 Aligned_cols=43 Identities=23% Similarity=0.607 Sum_probs=22.4
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHh---cC--CCCCCCccc
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RS--SQCPMCWQP 78 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq---~~--~sCP~CR~~ 78 (386)
+.|+|....+ ..|++...|.|.-|++ +..|+. .. -.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799999888 5678888999987754 334443 22 369999763
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.15 E-value=0.88 Score=50.80 Aligned_cols=53 Identities=30% Similarity=0.719 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCCCCeeecccCC-----cccHHHHHHHHhcC--CCCCCCcccCCCC
Q 016624 29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~~~vlpCgH-----~FC~~CI~~Wlq~~--~sCP~CR~~i~~~ 82 (386)
++++..|-||..+-..++| ..-||++ ..|..|+.+|+..+ ..|-+|..++..+
T Consensus 9 N~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 4457899999988655444 3347764 68999999999864 4699998877543
No 108
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.35 E-value=0.77 Score=51.61 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=29.0
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHHHHH
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wl 66 (386)
-++.|.||...+.. .+-.+-+|+|.||+.||.+..
T Consensus 816 p~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 37799999998854 456778999999999998865
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=0.84 Score=45.59 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.3
Q ss_pred cCCcccHHHHHHHHhc-------------CCCCCCCcccCCCCC
Q 016624 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKD 83 (386)
Q Consensus 53 CgH~FC~~CI~~Wlq~-------------~~sCP~CR~~i~~~d 83 (386)
|....|..|+.+|+.. +.+||+||+.+...|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5667889999999743 347999999987654
No 110
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=0.78 Score=43.55 Aligned_cols=39 Identities=26% Similarity=0.607 Sum_probs=28.7
Q ss_pred cccccccccCCCCeeecccCC-cccHHHHHHHHhcCCCCCCCcccCC
Q 016624 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 35 C~ICle~f~~~d~~~vlpCgH-~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
|-+|-+. ...+.++||.| .+|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888887 34478899998 788888533 456999977543
No 111
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=79.36 E-value=0.94 Score=43.30 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=36.5
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccC
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i 79 (386)
..|.+|...+ -...+.-.|+-.||..|+..++++...||.|.--+
T Consensus 182 k~Cn~Ch~Lv--Iqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLV--IQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHh--heeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 4799999987 33456667888899999999999999999994433
No 112
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.02 E-value=1.3 Score=49.25 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=31.9
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~ 74 (386)
-..|.||-..+. +-......|+|..|..|+.+|+.....||.
T Consensus 1028 ~~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 455777766542 233456789999999999999999888885
No 113
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.46 E-value=1.6 Score=44.02 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=37.4
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC---CCCCCCcc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~---~sCP~CR~ 77 (386)
-..||+--+.-.+.+++..+.|+|+.-+.-+....+.. ..||+|-.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 45799888877777889999999999999988877653 56999943
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=1.6 Score=45.65 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=31.6
Q ss_pred CCCCCcccccccccccCCCCeeecccCCcccHHHHHHHHhc
Q 016624 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~ 68 (386)
.+..+..|.||.+.+.. ....+.|+|.||..|+..++..
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 34557899999999833 4566799999999999998864
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=2.2 Score=42.61 Aligned_cols=41 Identities=24% Similarity=0.620 Sum_probs=30.0
Q ss_pred CCCCCCCcccccccccccCCCCeeeccc----CCcccHHHHHHHHhcC
Q 016624 26 GIQDSCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS 69 (386)
Q Consensus 26 ~iqde~d~~C~ICle~f~~~d~~~vlpC----gH~FC~~CI~~Wlq~~ 69 (386)
++....-+.|.+|.|-|.+. ....| .|.||+.|-.+.++.+
T Consensus 262 ~~A~~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 262 GAAPSAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ccCCCCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 33444568999999999542 22245 5999999999988754
No 116
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=73.14 E-value=3.3 Score=31.42 Aligned_cols=33 Identities=21% Similarity=0.606 Sum_probs=26.1
Q ss_pred CcccccccccccCCCCe-eecccCCcccHHHHHH
Q 016624 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLE 64 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~-~vlpCgH~FC~~CI~~ 64 (386)
...|++|-+.|++++.+ +...|+-.||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45799999999755554 4588999999999643
No 117
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=70.10 E-value=3.1 Score=42.10 Aligned_cols=49 Identities=24% Similarity=0.646 Sum_probs=37.1
Q ss_pred CcccccccccccCCCCeee-cccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~v-lpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
-..|+||.+.+...+...+ -+|++..|+.|+..-...+..||.||+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 3689999998733232222 468888999999988889999999996654
No 118
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=68.61 E-value=5.4 Score=32.50 Aligned_cols=54 Identities=15% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCCCCCcccccccccccCCC--C--eeecccCCcccHHHHHHHH-hcCCCCCCCcccCC
Q 016624 27 IQDSCDDACSICLEEFSESD--P--STVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPIS 80 (386)
Q Consensus 27 iqde~d~~C~ICle~f~~~d--~--~~vlpCgH~FC~~CI~~Wl-q~~~sCP~CR~~i~ 80 (386)
+++-....|.||-+.+.... . +..-.|.--.|..|+.-=. ...+.||.|+..+.
T Consensus 4 ~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 4 LKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34445678999999874221 1 3346788889999986433 45678999986654
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.62 E-value=3.5 Score=40.40 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=27.1
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHh
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq 67 (386)
=+.|+.||..+ .+ +++++=||.||..||++++.
T Consensus 43 FdcCsLtLqPc--~d-Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPC--RD-PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccc--cC-CccCCCCeeeeHHHHHHHHH
Confidence 45799999998 34 56678999999999999864
No 120
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=2.3 Score=46.55 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=30.4
Q ss_pred CcccccccccccCC-CCeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 32 d~~C~ICle~f~~~-d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
-+.|+||+..|... -.++-+.|+|..|.+|+.... +.+|| |+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CC
Confidence 45799998776432 346678999999999987654 45677 53
No 121
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.17 E-value=4.9 Score=40.82 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=34.1
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
+..|-.|.+.+......+...|++.||.+|=.-.-..-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 4459999887766555667889999999995443344567999963
No 122
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=2 Score=43.01 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=39.2
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~ 81 (386)
.+.|.||...+. -+.+.-.|+|.||..|...|.....-||.|+..+..
T Consensus 105 ~~~~~~~~g~l~--vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLT--VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEE--ecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 678999999883 233445699999999999999999999999886654
No 123
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=64.86 E-value=3.5 Score=40.12 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=35.2
Q ss_pred CcccccccccccCCCC-eeecccC-----CcccHHHHHHHHh--cCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~-~~vlpCg-----H~FC~~CI~~Wlq--~~~sCP~CR~~i~ 80 (386)
+..|-||.+....... ....+|. +..|..|+..|+. ....|.+|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999997633221 3455665 5679999999997 4567999987654
No 124
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=63.23 E-value=3.1 Score=45.24 Aligned_cols=41 Identities=27% Similarity=0.770 Sum_probs=26.8
Q ss_pred Cccccccccc-----ccCCCCeeecccCCcccHHHHHHHHhcCCCCCCC
Q 016624 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (386)
Q Consensus 32 d~~C~ICle~-----f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~C 75 (386)
-..|.||... |......+...|++.||..|+.. .+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4568888432 21223345678999999999543 44559999
No 125
>PLN02189 cellulose synthase
Probab=61.44 E-value=7.1 Score=45.13 Aligned_cols=53 Identities=17% Similarity=0.383 Sum_probs=36.1
Q ss_pred CCCCCcccccccccccCC--CC--eeecccCCcccHHHHHHH-HhcCCCCCCCcccCC
Q 016624 28 QDSCDDACSICLEEFSES--DP--STVTSCKHEFHLQCVLEW-CQRSSQCPMCWQPIS 80 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~--d~--~~vlpCgH~FC~~CI~~W-lq~~~sCP~CR~~i~ 80 (386)
+.-....|.||-+.+... .. +.+-.|+--.|..|.+-= -..++.||.|+..+.
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 444456899999997422 12 344568888999998422 234678999988765
No 126
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.37 E-value=3.8 Score=45.83 Aligned_cols=46 Identities=28% Similarity=0.586 Sum_probs=34.1
Q ss_pred CCcccccccccccCC----CCeeecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 31 ~d~~C~ICle~f~~~----d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
.+..|.-|++..... +.+.+..|+|.||+.|+.....+.. |-.|-.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 356899999986422 3467789999999999987766555 666643
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=4.9 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.562 Sum_probs=31.2
Q ss_pred CcccccccccccCC---CCeeecccCCcccHHHHHHHHhcCCCCCCC
Q 016624 32 DDACSICLEEFSES---DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (386)
Q Consensus 32 d~~C~ICle~f~~~---d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~C 75 (386)
-..|++|.-.+.-. ..++.. |+|.||+.|...|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 34688887765211 235555 99999999999998888777665
No 128
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=57.95 E-value=1.7 Score=34.68 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=22.6
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~ 80 (386)
|..||+|...|.. .. +|.+|..|-.. +.....||.|.++|.
T Consensus 1 e~~CP~C~~~L~~------~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW------QG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE------ET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE------eC-CEEECcccccc-ceecccCCCcccHHH
Confidence 4689999999732 12 77888888654 344567999988764
No 129
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=57.58 E-value=18 Score=39.84 Aligned_cols=58 Identities=21% Similarity=0.393 Sum_probs=33.5
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHH-HHhc----C--CCCCCCcccCCCCCcchHHHHHHHHH
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQR----S--SQCPMCWQPISLKDATSQELLEAVEQ 95 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~-Wlq~----~--~sCP~CR~~i~~~d~~~~~lle~ve~ 95 (386)
+.|+|+.--+ .-+.+-..|+|. .|++. |+.. . -.||+|.+.....++.....+..+..
T Consensus 307 L~CPl~~~Rm--~~P~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 307 LNCPLSKMRM--SLPARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred ecCCccccee--ecCCcccccccc---eecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 3566655554 223333444444 55543 3321 1 25999999999988887766655543
No 130
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.63 E-value=11 Score=37.17 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCCCCccchhhhHhhhhcCCCC----------------CCCcccccccccccCCC-CeeecccCCcccHHHHHHHHhcCC
Q 016624 8 EGKKPEDHMTSAAAFVEGGIQD----------------SCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSS 70 (386)
Q Consensus 8 ~~~~~~~~l~s~aa~v~~~iqd----------------e~d~~C~ICle~f~~~d-~~~vlpCgH~FC~~CI~~Wlq~~~ 70 (386)
...+...|+.+...+|+-.... .....|||--..|.... -..+-.|||+|-..-+.+.- ..
T Consensus 71 ~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as 148 (293)
T KOG3113|consen 71 SLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--AS 148 (293)
T ss_pred cCCcchhhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hc
Confidence 3456667777777776633321 12457988776663221 24557999999988877643 67
Q ss_pred CCCCCcccCCCCC
Q 016624 71 QCPMCWQPISLKD 83 (386)
Q Consensus 71 sCP~CR~~i~~~d 83 (386)
.|++|.+.+...|
T Consensus 149 ~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 149 VCHVCGAAYQEDD 161 (293)
T ss_pred cccccCCcccccC
Confidence 8999998887665
No 131
>PLN02436 cellulose synthase A
Probab=55.94 E-value=10 Score=44.10 Aligned_cols=54 Identities=20% Similarity=0.490 Sum_probs=36.3
Q ss_pred CCCCCCcccccccccccCC---CC-eeecccCCcccHHHHHHHH-hcCCCCCCCcccCC
Q 016624 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPIS 80 (386)
Q Consensus 27 iqde~d~~C~ICle~f~~~---d~-~~vlpCgH~FC~~CI~~Wl-q~~~sCP~CR~~i~ 80 (386)
.+.-....|.||-|.+... +. +.+-.|+--.|..|..-=. ..++.||.|+..+.
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3444456899999997322 21 3445688889999984222 34678999988765
No 132
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=55.46 E-value=11 Score=43.89 Aligned_cols=52 Identities=19% Similarity=0.502 Sum_probs=35.8
Q ss_pred CCCCcccccccccccCC---CC-eeecccCCcccHHHHH-HHHhcCCCCCCCcccCC
Q 016624 29 DSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 29 de~d~~C~ICle~f~~~---d~-~~vlpCgH~FC~~CI~-~Wlq~~~sCP~CR~~i~ 80 (386)
.-....|.||-+.+... ++ +.+-.|+--.|..|.+ +.-+.++.||.|+..+.
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 33456899999997422 21 4456788889999984 22345678999988764
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.60 E-value=9.4 Score=42.69 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=33.6
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCC--Cccc
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM--CWQP 78 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~--CR~~ 78 (386)
.|.+|-..+.. .......|+|.-|..|+..|+....-||. |-..
T Consensus 781 ~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceeee-eEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 68888877632 23445689999999999999999888876 6443
No 134
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.52 E-value=6.6 Score=42.26 Aligned_cols=45 Identities=31% Similarity=0.880 Sum_probs=36.9
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
...|.||++.. ..++++|. |.-|+..|+..+..||+|...+...+
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 67899999997 34666787 78899999999999999988776544
No 135
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=52.22 E-value=12 Score=37.95 Aligned_cols=52 Identities=21% Similarity=0.536 Sum_probs=35.1
Q ss_pred CCccccccccccc--------------CCCCe--eecccCCcccHHHHHHHHhc---------CCCCCCCcccCCCC
Q 016624 31 CDDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISLK 82 (386)
Q Consensus 31 ~d~~C~ICle~f~--------------~~d~~--~vlpCgH~FC~~CI~~Wlq~---------~~sCP~CR~~i~~~ 82 (386)
.+.+||+|+..-. +..++ ...||+|..-.+-..-|.+- +..||.|-..+...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 3779999998621 11111 34799998777888888753 34699997776543
No 136
>PLN02400 cellulose synthase
Probab=51.93 E-value=11 Score=43.95 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=36.6
Q ss_pred CCCCCCcccccccccccCC---CC-eeecccCCcccHHHHH-HHHhcCCCCCCCcccCC
Q 016624 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (386)
Q Consensus 27 iqde~d~~C~ICle~f~~~---d~-~~vlpCgH~FC~~CI~-~Wlq~~~sCP~CR~~i~ 80 (386)
.+.-....|.||-|.+... ++ +.+-.|+--.|..|.+ +.-..++.||.|+..+.
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3444456899999997422 21 3456788889999984 22234678999988765
No 137
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.13 E-value=5 Score=41.69 Aligned_cols=51 Identities=24% Similarity=0.608 Sum_probs=0.0
Q ss_pred Cccccccccccc--------------CCCCe--eecccCCcccHHHHHHHHhc---------CCCCCCCcccCCCC
Q 016624 32 DDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISLK 82 (386)
Q Consensus 32 d~~C~ICle~f~--------------~~d~~--~vlpCgH~FC~~CI~~Wlq~---------~~sCP~CR~~i~~~ 82 (386)
+.+||||+..-. +..++ ..-||||..-.+...-|.+- +..||.|-..|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 779999997521 11222 23699998888888888753 24699998777643
No 138
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=48.12 E-value=8.2 Score=28.94 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=20.0
Q ss_pred cccccccccCCC-------CeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 35 CSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 35 C~ICle~f~~~d-------~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
|--|+..|.... .-.-..|++.||.+|=.-.-+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666663321 123378999999999432223345799883
No 139
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=47.77 E-value=7.6 Score=40.45 Aligned_cols=33 Identities=18% Similarity=0.526 Sum_probs=24.5
Q ss_pred cccccccccccCCCCeeecccCCcccHHHHHHHH
Q 016624 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wl 66 (386)
.+|+||+.++-- ..-.+..|....|..|+.++-
T Consensus 75 ~ecpicflyyps-~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 75 TECPICFLYYPS-AKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccCceeeeeccc-ccchhhhhccchhhhheeccc
Confidence 489999999822 223445789999999998863
No 140
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.30 E-value=5.8 Score=35.64 Aligned_cols=28 Identities=32% Similarity=0.857 Sum_probs=18.2
Q ss_pred CCccccccccc-ccCCCCeeecccCCcccHHHHHHHH
Q 016624 31 CDDACSICLEE-FSESDPSTVTSCKHEFHLQCVLEWC 66 (386)
Q Consensus 31 ~d~~C~ICle~-f~~~d~~~vlpCgH~FC~~CI~~Wl 66 (386)
+|.+|.||+.. |.+ .||| .|..|-.+..
T Consensus 64 ddatC~IC~KTKFAD-------G~GH-~C~YCq~r~C 92 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD-------GCGH-NCSYCQTRFC 92 (169)
T ss_pred cCcchhhhhhccccc-------ccCc-ccchhhhhHH
Confidence 38899999986 322 5777 3555655554
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.63 E-value=3.1 Score=40.69 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=36.9
Q ss_pred CCcccccccccccCC---CCeeecc--------cCCcccHHHHHHHHhcC-CCCCCCccc
Q 016624 31 CDDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQRS-SQCPMCWQP 78 (386)
Q Consensus 31 ~d~~C~ICle~f~~~---d~~~vlp--------CgH~FC~~CI~~Wlq~~-~sCP~CR~~ 78 (386)
.+..|.||...+... ..+.++. |+|..|..|+..-+... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 457799999998621 2345666 99999999999987654 579999874
No 142
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.54 E-value=2.5 Score=41.61 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCcccccccccccCCCCeeec---ccCCcccHHHHHHHHhcCCCCCCCccc
Q 016624 30 SCDDACSICLEEFSESDPSTVT---SCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (386)
Q Consensus 30 e~d~~C~ICle~f~~~d~~~vl---pCgH~FC~~CI~~Wlq~~~sCP~CR~~ 78 (386)
+....||||=..-.-. .+... .-.|.+|.-|-.+|--....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3457999998763110 00111 136789999999998888899999543
No 143
>PLN02195 cellulose synthase A
Probab=45.19 E-value=22 Score=41.06 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=35.8
Q ss_pred CCcccccccccccCC---CC-eeecccCCcccHHHHHHHH--hcCCCCCCCcccCCC
Q 016624 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPISL 81 (386)
Q Consensus 31 ~d~~C~ICle~f~~~---d~-~~vlpCgH~FC~~CI~~Wl--q~~~sCP~CR~~i~~ 81 (386)
....|.||-+.+... ++ +.+-.|+--.|..|. ++- +.++.||.|+..+..
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 345899999976422 21 445678888999998 443 346789999988873
No 144
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.45 E-value=17 Score=34.22 Aligned_cols=40 Identities=30% Similarity=0.709 Sum_probs=27.7
Q ss_pred Cccccccccc-----ccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 32 d~~C~ICle~-----f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
...|-||-.. |..........|+..||..|+. ...||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 5678888752 2122334557899999999975 26699993
No 145
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=42.42 E-value=25 Score=34.46 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=45.7
Q ss_pred CCcccccccccccCCCCeeecccCCcccHHHHHHHHhcCC--CCCC--CcccCCCCCcchHHHHHHHHHHhhhc
Q 016624 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPM--CWQPISLKDATSQELLEAVEQERSIR 100 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~--sCP~--CR~~i~~~d~~~~~lle~ve~er~~r 100 (386)
-++.|+|-+..+ --++.-..|.|.|-.+-|...++... .||. |-+.+...++.-..+++.-+...-++
T Consensus 188 ~~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 188 LSNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred hcccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 378999977664 23445578999999999999998654 4774 66666656655555665554443343
No 146
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.66 E-value=20 Score=31.10 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=33.0
Q ss_pred CcccccccccccCCC-----------CeeecccCCcccHHHHHHHHhcCCCCCCCc
Q 016624 32 DDACSICLEEFSESD-----------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (386)
Q Consensus 32 d~~C~ICle~f~~~d-----------~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR 76 (386)
...|--|+..|.... .-....|.+.||.+|=.-|-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999884310 112478999999999777766677899995
No 147
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.19 E-value=34 Score=29.07 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCCCcccccccccccCCCCee------eccc---CCcccHHHHHHHHhcC---------CCCCCCccc
Q 016624 28 QDSCDDACSICLEEFSESDPST------VTSC---KHEFHLQCVLEWCQRS---------SQCPMCWQP 78 (386)
Q Consensus 28 qde~d~~C~ICle~f~~~d~~~------vlpC---gH~FC~~CI~~Wlq~~---------~sCP~CR~~ 78 (386)
+......|..|...-.+ .... ...| .-.||..||..++... -.||.||..
T Consensus 3 d~~~g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cCCCCCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34445567777774311 1111 1455 6689999998887432 359999873
No 148
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=37.63 E-value=19 Score=35.79 Aligned_cols=49 Identities=31% Similarity=0.563 Sum_probs=33.7
Q ss_pred cccccccccccCCCCeee----cccCCcccHHHHHHHHhc---------CCCCCCCcccCCC
Q 016624 33 DACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (386)
Q Consensus 33 ~~C~ICle~f~~~d~~~v----lpCgH~FC~~CI~~Wlq~---------~~sCP~CR~~i~~ 81 (386)
.+|-||...+...+.... ..|.-.+|..|+...+.. ...||.|++.+.-
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 589999998843333222 458888999999984432 2359999885543
No 149
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.35 E-value=26 Score=40.81 Aligned_cols=50 Identities=18% Similarity=0.413 Sum_probs=34.8
Q ss_pred CCcccccccccccCC---CC-eeecccCCcccHHHHHHH-HhcCCCCCCCcccCC
Q 016624 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEW-CQRSSQCPMCWQPIS 80 (386)
Q Consensus 31 ~d~~C~ICle~f~~~---d~-~~vlpCgH~FC~~CI~~W-lq~~~sCP~CR~~i~ 80 (386)
....|.||-+.+... ++ +.+-.|+--.|..|..-= -..++.||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 356899999987422 21 345678888999998422 234678999988765
No 151
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=36.09 E-value=15 Score=27.97 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=18.4
Q ss_pred CCCCcccccccccccCCCC-eeecccCCcccHHHHHHH
Q 016624 29 DSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEW 65 (386)
Q Consensus 29 de~d~~C~ICle~f~~~d~-~~vlpCgH~FC~~CI~~W 65 (386)
|.+...|.+|...|..... ..--.||+.||..|....
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4456789999999943221 234679999999886543
No 152
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=35.32 E-value=23 Score=28.08 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=9.2
Q ss_pred cccHHHHHHHHhc
Q 016624 56 EFHLQCVLEWCQR 68 (386)
Q Consensus 56 ~FC~~CI~~Wlq~ 68 (386)
-||.-||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 153
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.96 E-value=68 Score=24.67 Aligned_cols=46 Identities=17% Similarity=0.526 Sum_probs=31.5
Q ss_pred cccccccccccCCC-CeeecccC--CcccHHHHHHHHhcCCCCCCCcccCCCC
Q 016624 33 DACSICLEEFSESD-PSTVTSCK--HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (386)
Q Consensus 33 ~~C~ICle~f~~~d-~~~vlpCg--H~FC~~CI~~Wlq~~~sCP~CR~~i~~~ 82 (386)
..|-.|-..|-... ...+ |. ..||..|....+ +..||.|-..|...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 35667777774433 2233 55 479999998876 67899998877643
No 154
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.76 E-value=14 Score=41.86 Aligned_cols=48 Identities=19% Similarity=0.553 Sum_probs=34.1
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhc------CCCCCCCcccCC
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPIS 80 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~------~~sCP~CR~~i~ 80 (386)
...|..|...+.. ..-+...|++.||..|+..|.-+ ...|++||..-.
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 5689999887521 24567899999999999999511 135777776543
No 155
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.15 E-value=16 Score=38.09 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=0.0
Q ss_pred Cccccccccccc-----------CCCCeeecccCCcccHHHHHHHHhc------CCCCCCCcccCCC
Q 016624 32 DDACSICLEEFS-----------ESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISL 81 (386)
Q Consensus 32 d~~C~ICle~f~-----------~~d~~~vlpCgH~FC~~CI~~Wlq~------~~sCP~CR~~i~~ 81 (386)
-..||+=|..|. ...+-..+.|||++.++ .|-.. ...||+||..-..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 567888776652 22333458999987754 46432 4579999986544
No 156
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.07 E-value=16 Score=34.24 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=20.7
Q ss_pred HHhhhhhhh-hhhhhhcccccccchhhhh
Q 016624 274 SLKSRFNAV-SMRYKESISKSTRGWKERL 301 (386)
Q Consensus 274 ~~~s~~~~~-s~~yk~s~~k~t~g~ke~~ 301 (386)
-++++.+.- -|||||+|+|+++|+-+.|
T Consensus 135 G~~r~Vqe~sl~rFkenv~ktrkGl~yvl 163 (201)
T KOG3337|consen 135 GVSRAVQEFSLARFKENVTKTRKGLEYVL 163 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555543 3799999999999997543
No 157
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=30.53 E-value=31 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.506 Sum_probs=28.9
Q ss_pred CCCcccccccccccC--CCCeeecccCCcccHHHHHHHHhcCC--CCCCCcc
Q 016624 30 SCDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (386)
Q Consensus 30 e~d~~C~ICle~f~~--~d~~~vlpCgH~FC~~CI~~Wlq~~~--sCP~CR~ 77 (386)
..+..|.+|...|.. ........|.|.+|..|-.. ..... .|-+|.+
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 357899999987632 22356688999999999544 11111 4777754
No 158
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.40 E-value=37 Score=37.81 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=32.8
Q ss_pred ccccccccccCCCCeeecccCC-cccHHHHHHHHh--c----CCCCCCCcccC
Q 016624 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH-~FC~~CI~~Wlq--~----~~sCP~CR~~i 79 (386)
.|.||-..+ +-+..-.|+| ..|..|..+... . ...||+|+..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 599999886 3356679999 999999887653 2 34689998844
No 159
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=27.28 E-value=13 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=20.4
Q ss_pred ccc--cccccccCC----CC-eeecccCCcccHHHHHHH
Q 016624 34 ACS--ICLEEFSES----DP-STVTSCKHEFHLQCVLEW 65 (386)
Q Consensus 34 ~C~--ICle~f~~~----d~-~~vlpCgH~FC~~CI~~W 65 (386)
-|| =|...+... .. +....|++.||..|...|
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 477 665544321 22 233478999999998887
No 161
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.25 E-value=18 Score=37.91 Aligned_cols=38 Identities=26% Similarity=0.562 Sum_probs=26.5
Q ss_pred CcccccccccccCCCC---eee--cccCCcccHHHHHHHHhcC
Q 016624 32 DDACSICLEEFSESDP---STV--TSCKHEFHLQCVLEWCQRS 69 (386)
Q Consensus 32 d~~C~ICle~f~~~d~---~~v--lpCgH~FC~~CI~~Wlq~~ 69 (386)
...||.|...+..... ... .+|.|.||+.|+..|..+.
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3449999998743221 122 2499999999988887664
No 162
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.02 E-value=54 Score=33.89 Aligned_cols=16 Identities=13% Similarity=0.617 Sum_probs=12.2
Q ss_pred CCCCCCcccccccccc
Q 016624 27 IQDSCDDACSICLEEF 42 (386)
Q Consensus 27 iqde~d~~C~ICle~f 42 (386)
+++..+..||+|-+.+
T Consensus 10 ydedl~ElCPVCGDkV 25 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKV 25 (475)
T ss_pred CccccccccccccCcc
Confidence 3555577899999986
No 163
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=25.91 E-value=25 Score=25.05 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=26.1
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHh------cCCCCCCCc
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCW 76 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq------~~~sCP~CR 76 (386)
.|.||......++-+.--.|...||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888888432222233357888999999765432 134577764
No 164
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.74 E-value=18 Score=36.48 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=30.7
Q ss_pred CcccccccccccCCCCeee----cccCCcccHHHHHHHHhcCCCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~v----lpCgH~FC~~CI~~Wlq~~~sCP~CR~~ 78 (386)
...||||-..-.-.. +.. -.=.+.+|..|-.+|--....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 449999987631100 010 1123678888999999889999999653
No 165
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.40 E-value=20 Score=29.83 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCCCCcccccc--ccchhHHHHHHHHhcCCC
Q 016624 305 NASMPGTGSENRSE--NVGITSVSRLMEQLGTGE 336 (386)
Q Consensus 305 ~~~~~~~~~~~~re--~agia~v~rm~e~l~~~~ 336 (386)
.-|+.||-..++++ +.+.++|+|.++.|...+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 35677888888777 899999999999998654
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.23 E-value=20 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCCee---ecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 31 CDDACSICLEEFSESDPST---VTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~---vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
....||||=..-.-. -+. .-.=.+.+|..|-.+|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 468999998763110 000 0122467888899999988999999965
No 167
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=25.13 E-value=31 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.1
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016624 313 SENRSE-NVGITSVSRLMEQLGTGE 336 (386)
Q Consensus 313 ~~~~re-~agia~v~rm~e~l~~~~ 336 (386)
+-+||. .-|-.-.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 457999 999999999999999665
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.13 E-value=12 Score=23.40 Aligned_cols=6 Identities=50% Similarity=1.209 Sum_probs=2.5
Q ss_pred CCCCCc
Q 016624 71 QCPMCW 76 (386)
Q Consensus 71 sCP~CR 76 (386)
.||.|-
T Consensus 15 fC~~CG 20 (23)
T PF13240_consen 15 FCPNCG 20 (23)
T ss_pred chhhhC
Confidence 344443
No 169
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=42 Score=37.35 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=27.0
Q ss_pred ccccccccccc-CCCCeeecccCCcccHHHHHHHHhcCCCCCCC
Q 016624 33 DACSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (386)
Q Consensus 33 ~~C~ICle~f~-~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~C 75 (386)
.+|-+|...=. ..+-...+.|+-.||..| |+.-...||+|
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCccc
Confidence 36777876531 112245578999999998 44456779999
No 170
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.49 E-value=51 Score=36.90 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=18.9
Q ss_pred ecccCCcccHHHHHHHHhcCCCCCCCcc
Q 016624 50 VTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (386)
Q Consensus 50 vlpCgH~FC~~CI~~Wlq~~~sCP~CR~ 77 (386)
..|-|.+||.+|-..=-.....|-+|-.
T Consensus 43 qVPtGpWfCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 43 QVPTGPWFCRKCESQERAARVRCELCPH 70 (900)
T ss_pred ecCCCchhhhhhhhhhhhccceeecccC
Confidence 3577899999996654444566777743
No 171
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.47 E-value=26 Score=27.89 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=27.3
Q ss_pred hhcCCCCCCCcccccccccccCCCCe--eecccCCcccHHHHHH
Q 016624 23 VEGGIQDSCDDACSICLEEFSESDPS--TVTSCKHEFHLQCVLE 64 (386)
Q Consensus 23 v~~~iqde~d~~C~ICle~f~~~d~~--~vlpCgH~FC~~CI~~ 64 (386)
+...+.......|.+|.... +-.+ ....|...||..|...
T Consensus 27 v~~~~~~~~~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 27 VEKEIKRRRKLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHHHHHHhCCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 44444455578999999884 2222 3357899999999765
No 172
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.69 E-value=98 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.477 Sum_probs=29.7
Q ss_pred ccccccccccCCCCeeeccc--CCcccHHHHHHHHhcCCCCCCCcccCCCCCc
Q 016624 34 ACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpC--gH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~ 84 (386)
.|--|-.++-+... -.+-| .|.||..|....+ +..||.|-..+.-...
T Consensus 7 nCECCDrDLpp~s~-dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDST-DARICTFECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCC-ceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 35556555532211 11234 3789999987644 6789999888765543
No 173
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=21.70 E-value=77 Score=20.43 Aligned_cols=37 Identities=19% Similarity=0.581 Sum_probs=21.2
Q ss_pred ccccccccccCCCCeeecccCCcccHHHHHHHHhcCCCCCCCcccC
Q 016624 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (386)
Q Consensus 34 ~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~~sCP~CR~~i 79 (386)
.|..|-+.+.... ..+..=+..||..| ..|..|...|
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccC--------CCCcccCCcC
Confidence 3778888774421 23323356677666 3567776655
No 174
>PLN02248 cellulose synthase-like protein
Probab=21.40 E-value=69 Score=37.73 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=27.3
Q ss_pred ccCCcccHHHHHHHHhcCCCCCCCcccCCCCC
Q 016624 52 SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (386)
Q Consensus 52 pCgH~FC~~CI~~Wlq~~~sCP~CR~~i~~~d 83 (386)
.|++..|.+|...-++....||-|+.++...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 57789999999999998889999999886543
No 175
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.33 E-value=53 Score=32.46 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=33.3
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHhcC--CCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq~~--~sCP~CR~~ 78 (386)
++.|||=...+ ..|+.-..|+|+|=..-|...+... -.||+=-..
T Consensus 176 s~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 67899865555 3566668999999999999998763 357775433
No 176
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=20.93 E-value=36 Score=29.39 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=7.7
Q ss_pred ccccccccccc
Q 016624 33 DACSICLEEFS 43 (386)
Q Consensus 33 ~~C~ICle~f~ 43 (386)
..|++|-.+|.
T Consensus 4 p~cp~c~sEyt 14 (112)
T COG2824 4 PPCPKCNSEYT 14 (112)
T ss_pred CCCCccCCceE
Confidence 45888877763
No 177
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=79 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=27.6
Q ss_pred CCcccccccccccCCCCeeecccC--CcccHHHHHHHH
Q 016624 31 CDDACSICLEEFSESDPSTVTSCK--HEFHLQCVLEWC 66 (386)
Q Consensus 31 ~d~~C~ICle~f~~~d~~~vlpCg--H~FC~~CI~~Wl 66 (386)
...+|..|-+. .+++.+.+|. |+-|..|+.-+.
T Consensus 220 ~ni~C~~Ctdv---~~~vlvf~Cns~HvtC~dCFr~yc 254 (446)
T KOG0006|consen 220 RNITCITCTDV---RSPVLVFQCNSRHVTCLDCFRLYC 254 (446)
T ss_pred ccceeEEecCC---ccceEEEecCCceeehHHhhhhHh
Confidence 36789999998 4678889998 999999998763
No 178
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.76 E-value=68 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.6
Q ss_pred cccccccccccCCC-CeeecccCCcccHHHHHHHH
Q 016624 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (386)
Q Consensus 33 ~~C~ICle~f~~~d-~~~vlpCgH~FC~~CI~~Wl 66 (386)
..|.+|-..|.... ......||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 56899988774322 23346799999999976543
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.68 E-value=75 Score=30.76 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=21.0
Q ss_pred cccHHHHHHHHhcCCCCCCCcccCCCCCc
Q 016624 56 EFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (386)
Q Consensus 56 ~FC~~CI~~Wlq~~~sCP~CR~~i~~~d~ 84 (386)
.-|..|-...-..-..||+|+..-..+++
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccccCCC
Confidence 35888877655566899999887665543
No 180
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.58 E-value=52 Score=24.15 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=21.2
Q ss_pred CcccccccccccCCCCeeecccCCcccHHHHHHHHh--cCCCCCCCccc
Q 016624 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQP 78 (386)
Q Consensus 32 d~~C~ICle~f~~~d~~~vlpCgH~FC~~CI~~Wlq--~~~sCP~CR~~ 78 (386)
...||.|-+.|.. . .+...|...-.. ....||+|...
T Consensus 2 ~f~CP~C~~~~~~----~------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSE----S------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCH----H------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 5789999996521 1 133344444332 23569999753
No 181
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=20.38 E-value=49 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016624 313 SENRSE-NVGITSVSRLMEQLGTGE 336 (386)
Q Consensus 313 ~~~~re-~agia~v~rm~e~l~~~~ 336 (386)
|-+||. .-|..--+|+||+||..+
T Consensus 23 S~lQR~~~IGynrAariid~lE~~G 47 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEG 47 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCc
Confidence 457999 999999999999999665
Done!