Query 016625
Match_columns 386
No_of_seqs 137 out of 615
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05339 PEP synthetase regula 100.0 3E-105 6E-110 768.3 32.4 264 95-374 2-266 (269)
2 PF03618 Kinase-PPPase: Kinase 100.0 3E-104 7E-109 756.7 29.1 254 100-367 1-255 (255)
3 COG1806 Uncharacterized protei 100.0 5.5E-95 1.2E-99 693.5 28.8 270 95-375 1-271 (273)
4 PRK13947 shikimate kinase; Pro 97.6 0.00091 2E-08 58.6 11.5 120 248-372 3-168 (171)
5 PRK04040 adenylate kinase; Pro 97.2 0.0024 5.2E-08 58.8 9.8 115 249-370 5-187 (188)
6 PRK04220 2-phosphoglycerate ki 97.0 0.0039 8.5E-08 62.3 9.9 88 281-374 197-292 (301)
7 PRK03839 putative kinase; Prov 96.9 0.0065 1.4E-07 54.1 9.4 117 249-374 3-155 (180)
8 PRK14738 gmk guanylate kinase; 96.8 0.015 3.1E-07 53.9 11.4 136 240-376 3-198 (206)
9 PRK03731 aroL shikimate kinase 96.5 0.027 5.8E-07 49.6 9.9 119 249-371 5-169 (171)
10 PRK05416 glmZ(sRNA)-inactivati 96.4 0.021 4.6E-07 56.4 9.9 117 249-372 9-160 (288)
11 PRK05057 aroK shikimate kinase 96.4 0.016 3.5E-07 52.2 8.2 114 249-372 7-171 (172)
12 PRK13808 adenylate kinase; Pro 96.3 0.03 6.4E-07 56.8 10.6 122 249-373 3-194 (333)
13 COG1936 Predicted nucleotide k 96.3 0.017 3.7E-07 54.1 7.8 111 249-372 3-156 (180)
14 PF00625 Guanylate_kin: Guanyl 96.0 0.037 8E-07 49.7 8.6 123 249-372 5-182 (183)
15 PRK13477 bifunctional pantoate 95.9 0.065 1.4E-06 57.2 11.0 73 293-372 421-503 (512)
16 PRK04182 cytidylate kinase; Pr 95.9 0.064 1.4E-06 46.8 9.2 27 249-275 3-30 (180)
17 TIGR02173 cyt_kin_arch cytidyl 95.4 0.11 2.3E-06 45.1 9.0 27 249-275 3-30 (171)
18 PRK00131 aroK shikimate kinase 95.4 0.16 3.4E-06 43.9 9.9 28 248-275 6-34 (175)
19 PRK14532 adenylate kinase; Pro 95.2 0.13 2.8E-06 46.1 8.9 28 249-276 3-31 (188)
20 TIGR01360 aden_kin_iso1 adenyl 95.0 0.32 6.9E-06 42.8 10.8 116 249-371 6-186 (188)
21 PRK13949 shikimate kinase; Pro 94.9 0.2 4.3E-06 45.2 9.3 114 249-369 4-168 (169)
22 PRK13946 shikimate kinase; Pro 94.9 0.18 3.8E-06 45.7 9.0 27 248-274 12-39 (184)
23 PRK02496 adk adenylate kinase; 94.7 0.32 6.9E-06 43.5 10.0 113 249-371 4-183 (184)
24 TIGR00682 lpxK tetraacyldisacc 94.5 0.026 5.6E-07 56.5 2.7 29 246-274 27-62 (311)
25 PRK12339 2-phosphoglycerate ki 94.4 0.22 4.7E-06 46.5 8.5 72 296-370 122-195 (197)
26 smart00072 GuKc Guanylate kina 94.4 0.46 1E-05 42.9 10.4 124 249-372 5-182 (184)
27 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.59 1.3E-05 41.3 10.7 28 249-276 2-30 (183)
28 PRK00652 lpxK tetraacyldisacch 94.2 0.033 7.1E-07 56.1 2.7 28 247-274 49-83 (325)
29 PF13207 AAA_17: AAA domain; P 94.0 0.032 7E-07 45.9 2.0 27 249-275 2-29 (121)
30 PRK08154 anaerobic benzoate ca 94.0 0.36 7.8E-06 47.7 9.6 123 248-372 135-301 (309)
31 PLN02200 adenylate kinase fami 94.0 0.64 1.4E-05 44.4 10.9 115 249-372 46-224 (234)
32 TIGR03263 guanyl_kin guanylate 93.8 0.92 2E-05 40.0 10.9 43 329-371 137-179 (180)
33 TIGR02322 phosphon_PhnN phosph 93.7 0.73 1.6E-05 40.8 10.1 20 249-268 4-23 (179)
34 PRK06762 hypothetical protein; 93.5 0.26 5.6E-06 43.1 6.9 21 249-269 5-25 (166)
35 cd01672 TMPK Thymidine monopho 93.4 0.84 1.8E-05 40.0 10.0 29 249-277 3-35 (200)
36 PRK00300 gmk guanylate kinase; 93.3 1.2 2.7E-05 40.1 11.2 45 329-373 141-185 (205)
37 PRK01906 tetraacyldisaccharide 92.9 0.067 1.5E-06 54.2 2.6 31 246-276 55-92 (338)
38 PLN02199 shikimate kinase 92.9 1.6 3.6E-05 44.0 12.2 148 211-373 77-289 (303)
39 PRK06526 transposase; Provisio 92.8 0.66 1.4E-05 45.0 9.1 50 216-276 79-132 (254)
40 PF02606 LpxK: Tetraacyldisacc 92.8 0.11 2.3E-06 52.4 3.7 40 235-274 23-69 (326)
41 PRK13948 shikimate kinase; Pro 92.8 1.2 2.6E-05 41.2 10.4 114 246-372 10-175 (182)
42 TIGR02729 Obg_CgtA Obg family 92.3 0.51 1.1E-05 47.3 7.9 35 246-280 157-191 (329)
43 PRK00625 shikimate kinase; Pro 92.3 1.5 3.2E-05 40.1 10.2 114 249-370 3-171 (173)
44 COG1663 LpxK Tetraacyldisaccha 92.2 0.11 2.3E-06 53.0 3.0 30 246-275 46-82 (336)
45 PRK08233 hypothetical protein; 92.2 1.3 2.8E-05 38.7 9.5 74 293-373 98-178 (182)
46 PRK08356 hypothetical protein; 91.9 1.8 3.9E-05 39.4 10.4 24 249-272 8-31 (195)
47 PRK12297 obgE GTPase CgtA; Rev 91.6 0.53 1.2E-05 49.1 7.3 34 246-279 158-191 (424)
48 COG1219 ClpX ATP-dependent pro 91.4 0.13 2.7E-06 53.0 2.5 50 220-280 78-127 (408)
49 PRK14528 adenylate kinase; Pro 91.0 0.7 1.5E-05 42.1 6.7 114 249-369 4-185 (186)
50 PRK14530 adenylate kinase; Pro 90.9 3.3 7.1E-05 38.2 11.1 27 248-274 5-32 (215)
51 PRK14737 gmk guanylate kinase; 90.8 3.9 8.5E-05 37.6 11.4 121 249-372 7-184 (186)
52 PRK11860 bifunctional 3-phosph 89.5 3.7 8E-05 44.9 11.7 68 297-372 578-655 (661)
53 COG0703 AroK Shikimate kinase 89.4 1.6 3.5E-05 40.7 7.7 112 248-372 4-168 (172)
54 PF03808 Glyco_tran_WecB: Glyc 89.2 4.9 0.00011 36.5 10.6 102 95-204 46-148 (172)
55 PRK12296 obgE GTPase CgtA; Rev 89.0 1.3 2.8E-05 47.4 7.6 53 227-279 136-192 (500)
56 cd01983 Fer4_NifH The Fer4_Nif 88.8 0.33 7.2E-06 36.9 2.4 29 249-277 2-34 (99)
57 PF00899 ThiF: ThiF family; I 88.5 2.9 6.3E-05 35.8 8.2 68 110-189 57-124 (135)
58 COG2019 AdkA Archaeal adenylat 88.4 3.9 8.4E-05 38.8 9.4 116 249-371 7-187 (189)
59 PF03668 ATP_bind_2: P-loop AT 88.4 2.4 5.2E-05 42.5 8.6 118 249-373 4-157 (284)
60 PRK14527 adenylate kinase; Pro 88.0 5.7 0.00012 35.9 10.2 26 249-274 9-35 (191)
61 cd04122 Rab14 Rab14 subfamily. 87.9 1.1 2.3E-05 38.7 5.2 44 248-292 4-47 (166)
62 TIGR00017 cmk cytidylate kinas 87.7 1.6 3.4E-05 41.3 6.6 24 249-272 5-29 (217)
63 KOG0745 Putative ATP-dependent 87.7 0.32 6.9E-06 51.8 2.1 45 232-280 212-256 (564)
64 PF00004 AAA: ATPase family as 87.6 0.4 8.7E-06 39.2 2.3 24 249-272 1-25 (132)
65 PRK00091 miaA tRNA delta(2)-is 86.6 1.3 2.7E-05 44.4 5.6 24 249-272 7-31 (307)
66 cd04119 RJL RJL (RabJ-Like) su 86.5 1.6 3.5E-05 36.7 5.4 23 249-271 3-25 (168)
67 COG1100 GTPase SAR1 and relate 86.5 3.3 7.2E-05 37.2 7.7 112 247-363 6-126 (219)
68 PRK12337 2-phosphoglycerate ki 86.4 4 8.7E-05 43.7 9.4 74 297-373 387-462 (475)
69 PLN02748 tRNA dimethylallyltra 86.3 1.9 4.1E-05 45.8 6.9 83 249-354 25-117 (468)
70 PLN02796 D-glycerate 3-kinase 86.1 4.4 9.6E-05 41.6 9.2 111 138-278 8-136 (347)
71 TIGR01526 nadR_NMN_Atrans nico 86.1 0.83 1.8E-05 45.7 4.0 26 248-273 164-190 (325)
72 PRK13975 thymidylate kinase; P 86.0 3.9 8.4E-05 36.6 7.9 72 292-373 113-191 (196)
73 cd04112 Rab26 Rab26 subfamily. 85.4 2.1 4.6E-05 38.2 5.9 125 249-374 3-166 (191)
74 COG0190 FolD 5,10-methylene-te 85.3 4.9 0.00011 40.3 8.9 150 94-274 29-184 (283)
75 PRK12299 obgE GTPase CgtA; Rev 85.2 1.2 2.7E-05 44.8 4.7 34 246-279 158-191 (335)
76 PRK14021 bifunctional shikimat 85.1 4.4 9.5E-05 43.4 9.0 71 295-374 105-178 (542)
77 TIGR00176 mobB molybdopterin-g 85.0 0.58 1.3E-05 41.9 2.0 28 249-276 2-33 (155)
78 TIGR01313 therm_gnt_kin carboh 84.9 0.57 1.2E-05 40.8 2.0 22 249-270 1-23 (163)
79 cd00464 SK Shikimate kinase (S 84.5 0.71 1.5E-05 39.3 2.3 26 249-274 2-28 (154)
80 COG3598 RepA RecA-family ATPas 84.5 4 8.7E-05 42.4 7.9 17 251-267 94-110 (402)
81 cd04159 Arl10_like Arl10-like 83.8 2.7 5.9E-05 34.5 5.4 24 248-271 1-24 (159)
82 PF13521 AAA_28: AAA domain; P 83.7 0.35 7.6E-06 42.4 0.1 29 249-282 2-30 (163)
83 PRK06217 hypothetical protein; 83.4 0.82 1.8E-05 41.2 2.3 26 249-274 4-30 (183)
84 PF13238 AAA_18: AAA domain; P 83.1 0.48 1E-05 38.6 0.7 22 249-270 1-22 (129)
85 cd01428 ADK Adenylate kinase ( 82.9 0.96 2.1E-05 40.1 2.6 28 249-276 2-30 (194)
86 PRK13951 bifunctional shikimat 82.7 8.5 0.00018 40.9 9.9 107 249-368 3-157 (488)
87 cd01821 Rhamnogalacturan_acety 82.7 5.4 0.00012 35.7 7.3 55 144-198 93-162 (198)
88 PRK07261 topology modulation p 82.6 0.93 2E-05 40.8 2.4 27 249-275 3-30 (171)
89 PLN02165 adenylate isopentenyl 82.5 1.4 3.1E-05 44.9 3.9 91 249-354 46-139 (334)
90 cd00757 ThiF_MoeB_HesA_family 82.4 5.5 0.00012 37.5 7.5 79 97-188 62-142 (228)
91 TIGR00174 miaA tRNA isopenteny 82.1 3.1 6.7E-05 41.5 6.0 49 249-298 2-60 (287)
92 TIGR01351 adk adenylate kinase 82.0 0.99 2.1E-05 41.5 2.4 28 249-276 2-30 (210)
93 cd03283 ABC_MutS-like MutS-lik 81.9 12 0.00026 34.7 9.5 25 249-273 28-58 (199)
94 PF07728 AAA_5: AAA domain (dy 81.7 1.1 2.4E-05 38.0 2.3 34 248-281 1-35 (139)
95 cd04156 ARLTS1 ARLTS1 subfamil 81.5 7.7 0.00017 32.8 7.5 22 249-270 2-23 (160)
96 cd02027 APSK Adenosine 5'-phos 81.2 8.9 0.00019 33.7 8.0 26 249-274 2-31 (149)
97 PF03205 MobB: Molybdopterin g 81.0 0.97 2.1E-05 39.9 1.9 26 249-274 3-32 (140)
98 cd00227 CPT Chloramphenicol (C 80.7 0.97 2.1E-05 40.3 1.8 21 249-269 5-25 (175)
99 cd01483 E1_enzyme_family Super 80.5 10 0.00023 32.6 8.1 80 98-189 41-121 (143)
100 cd02020 CMPK Cytidine monophos 80.5 1.2 2.6E-05 37.3 2.2 25 249-273 2-27 (147)
101 PRK09518 bifunctional cytidyla 80.3 13 0.00028 41.1 10.5 46 328-373 179-232 (712)
102 TIGR01663 PNK-3'Pase polynucle 80.3 8 0.00017 41.8 8.7 28 249-276 372-400 (526)
103 cd00009 AAA The AAA+ (ATPases 80.0 1.3 2.9E-05 35.5 2.2 22 248-269 21-42 (151)
104 PRK08328 hypothetical protein; 79.8 4.9 0.00011 38.2 6.3 79 97-187 68-148 (231)
105 PRK00279 adk adenylate kinase; 79.8 1.3 2.9E-05 40.8 2.4 28 249-276 3-31 (215)
106 PRK00771 signal recognition pa 79.7 1.2 2.7E-05 46.6 2.5 30 247-276 96-129 (437)
107 PF08283 Gemini_AL1_M: Geminiv 79.3 1 2.2E-05 39.0 1.4 17 244-260 88-104 (106)
108 smart00178 SAR Sar1p-like memb 78.6 9.6 0.00021 34.0 7.5 22 247-268 18-39 (184)
109 cd01876 YihA_EngB The YihA (En 78.6 1.4 3.1E-05 36.5 2.0 24 248-271 1-24 (170)
110 cd01864 Rab19 Rab19 subfamily. 78.2 5.2 0.00011 34.3 5.5 20 248-267 5-24 (165)
111 cd00879 Sar1 Sar1 subfamily. 78.2 10 0.00022 33.3 7.4 23 246-268 19-41 (190)
112 cd04158 ARD1 ARD1 subfamily. 78.0 7.9 0.00017 33.7 6.6 21 249-269 2-22 (169)
113 TIGR00696 wecB_tagA_cpsF bacte 77.9 16 0.00035 33.8 8.9 101 95-204 46-147 (177)
114 PLN02840 tRNA dimethylallyltra 77.9 4.7 0.0001 42.5 6.0 23 249-271 24-47 (421)
115 cd04157 Arl6 Arl6 subfamily. 77.7 11 0.00023 31.8 7.1 29 249-277 2-30 (162)
116 KOG1707 Predicted Ras related/ 77.6 3.3 7.2E-05 45.4 4.9 105 245-357 8-124 (625)
117 PRK00023 cmk cytidylate kinase 77.6 1.1 2.3E-05 42.4 1.1 95 249-349 7-124 (225)
118 TIGR02355 moeB molybdopterin s 77.6 9.5 0.00021 36.7 7.6 78 97-187 65-144 (240)
119 COG2804 PulE Type II secretory 77.4 6.2 0.00014 42.5 6.8 87 103-201 308-394 (500)
120 PRK04328 hypothetical protein; 77.3 2.5 5.5E-05 40.3 3.6 29 243-271 19-48 (249)
121 PRK00889 adenylylsulfate kinas 77.1 16 0.00035 32.3 8.4 21 249-269 7-27 (175)
122 cd04160 Arfrp1 Arfrp1 subfamil 77.0 9.6 0.00021 32.4 6.7 20 249-268 2-21 (167)
123 TIGR03877 thermo_KaiC_1 KaiC d 76.8 3.1 6.8E-05 39.2 4.0 32 243-274 17-53 (237)
124 cd01835 SGNH_hydrolase_like_3 76.8 5.9 0.00013 35.1 5.6 48 147-194 101-161 (193)
125 PRK05690 molybdopterin biosynt 76.6 9.6 0.00021 36.7 7.3 78 98-187 74-152 (245)
126 cd04161 Arl2l1_Arl13_like Arl2 76.6 6.1 0.00013 34.5 5.5 103 249-358 2-110 (167)
127 cd04118 Rab24 Rab24 subfamily. 76.5 4.3 9.3E-05 35.9 4.6 26 248-273 2-27 (193)
128 PRK14531 adenylate kinase; Pro 76.3 1.9 4.1E-05 38.9 2.3 26 248-273 4-30 (183)
129 PRK13695 putative NTPase; Prov 76.2 20 0.00043 31.8 8.8 114 248-368 2-147 (174)
130 cd01860 Rab5_related Rab5-rela 76.0 5.8 0.00012 33.5 5.1 24 247-270 2-25 (163)
131 PF04665 Pox_A32: Poxvirus A32 75.9 2.2 4.7E-05 41.7 2.7 53 248-300 15-68 (241)
132 TIGR02356 adenyl_thiF thiazole 75.9 11 0.00024 35.0 7.3 70 107-189 72-143 (202)
133 cd02023 UMPK Uridine monophosp 75.3 1.9 4.1E-05 38.9 2.1 21 249-269 2-22 (198)
134 PRK13602 putative ribosomal pr 75.3 14 0.00029 30.2 6.8 54 149-204 18-73 (82)
135 PF13671 AAA_33: AAA domain; P 75.2 2 4.4E-05 36.0 2.1 28 249-276 2-30 (143)
136 cd03115 SRP The signal recogni 75.2 2 4.3E-05 37.9 2.1 29 249-277 3-35 (173)
137 cd04145 M_R_Ras_like M-Ras/R-R 74.9 6.1 0.00013 33.3 4.9 21 248-268 4-24 (164)
138 PRK08118 topology modulation p 74.6 2.1 4.6E-05 38.5 2.1 25 249-273 4-29 (167)
139 PF02223 Thymidylate_kin: Thym 74.6 12 0.00027 33.3 7.1 69 292-366 118-186 (186)
140 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 74.3 6.6 0.00014 33.6 5.1 26 248-273 4-29 (166)
141 PRK01184 hypothetical protein; 74.1 2.1 4.6E-05 38.1 2.0 27 249-275 4-30 (184)
142 cd00071 GMPK Guanosine monopho 73.8 1.9 4.1E-05 37.5 1.6 21 249-269 2-22 (137)
143 PRK00081 coaE dephospho-CoA ki 73.6 2.5 5.4E-05 38.8 2.4 26 249-274 5-30 (194)
144 cd01918 HprK_C HprK/P, the bif 73.5 2.6 5.6E-05 38.3 2.4 24 249-272 17-40 (149)
145 smart00382 AAA ATPases associa 73.5 2.1 4.5E-05 33.7 1.6 21 249-269 5-25 (148)
146 cd02019 NK Nucleoside/nucleoti 73.3 2.7 5.8E-05 32.4 2.1 26 249-274 2-29 (69)
147 cd01485 E1-1_like Ubiquitin ac 73.2 15 0.00032 34.2 7.4 81 98-188 61-144 (198)
148 PRK08939 primosomal protein Dn 72.8 3.3 7.2E-05 41.3 3.2 46 227-277 142-193 (306)
149 cd06533 Glyco_transf_WecG_TagA 72.3 22 0.00048 32.3 8.2 102 95-204 44-146 (171)
150 PF00448 SRP54: SRP54-type pro 72.1 2.5 5.3E-05 39.4 2.0 29 249-277 4-36 (196)
151 cd03116 MobB Molybdenum is an 72.0 2.8 6.1E-05 37.9 2.3 29 249-277 4-36 (159)
152 PF13401 AAA_22: AAA domain; P 72.0 5.3 0.00011 32.9 3.8 101 249-371 7-113 (131)
153 TIGR03015 pepcterm_ATPase puta 72.0 7 0.00015 36.5 5.0 20 249-268 46-65 (269)
154 PTZ00088 adenylate kinase 1; P 72.0 2.8 6E-05 40.1 2.4 26 249-274 9-35 (229)
155 PRK10078 ribose 1,5-bisphospho 71.7 2.3 5E-05 38.3 1.7 21 249-269 5-25 (186)
156 cd02022 DPCK Dephospho-coenzym 71.7 2.9 6.2E-05 37.7 2.3 28 249-276 2-29 (179)
157 cd04113 Rab4 Rab4 subfamily. 71.1 8.3 0.00018 32.7 4.9 26 248-273 2-27 (161)
158 cd04120 Rab12 Rab12 subfamily. 71.1 7.4 0.00016 36.1 4.9 22 248-269 2-23 (202)
159 PRK10751 molybdopterin-guanine 71.0 2.8 6E-05 38.9 2.0 29 249-277 9-41 (173)
160 PRK06547 hypothetical protein; 71.0 2.8 6E-05 38.3 2.0 21 249-269 17-38 (172)
161 cd01827 sialate_O-acetylestera 70.9 7.3 0.00016 34.2 4.6 48 145-192 93-158 (188)
162 cd01898 Obg Obg subfamily. Th 70.9 2.9 6.2E-05 35.7 2.0 32 247-278 1-32 (170)
163 cd02034 CooC The accessory pro 70.9 3.3 7.1E-05 35.5 2.4 26 249-274 2-31 (116)
164 PRK14729 miaA tRNA delta(2)-is 70.3 3.1 6.7E-05 41.8 2.4 22 249-270 7-28 (300)
165 PRK07714 hypothetical protein; 70.2 23 0.00049 29.7 7.2 43 160-204 38-80 (100)
166 cd03285 ABC_MSH2_euk MutS2 hom 69.8 35 0.00076 32.2 9.2 23 249-271 33-61 (222)
167 PRK08181 transposase; Validate 69.7 3.5 7.5E-05 40.6 2.6 52 216-278 86-142 (269)
168 KOG3347 Predicted nucleotide k 69.7 52 0.0011 31.1 9.9 108 247-370 8-164 (176)
169 cd01832 SGNH_hydrolase_like_1 69.3 12 0.00026 32.7 5.6 50 144-193 91-156 (185)
170 COG1102 Cmk Cytidylate kinase 69.2 3.9 8.4E-05 38.6 2.6 118 249-376 3-176 (179)
171 cd04138 H_N_K_Ras_like H-Ras/N 69.0 8.7 0.00019 32.0 4.5 22 248-269 3-24 (162)
172 cd04136 Rap_like Rap-like subf 68.6 8.6 0.00019 32.4 4.4 24 248-271 3-26 (163)
173 PRK06683 hypothetical protein; 68.6 24 0.00052 28.9 6.9 51 151-203 20-72 (82)
174 cd01492 Aos1_SUMO Ubiquitin ac 68.5 16 0.00034 34.0 6.5 77 98-187 63-140 (197)
175 COG0563 Adk Adenylate kinase a 68.3 3.4 7.3E-05 38.1 2.0 21 249-269 3-23 (178)
176 PF13433 Peripla_BP_5: Peripla 68.2 25 0.00054 36.5 8.4 75 98-180 135-212 (363)
177 PLN03108 Rab family protein; P 68.2 11 0.00024 34.6 5.3 24 248-271 8-31 (210)
178 cd01838 Isoamyl_acetate_hydrol 68.1 18 0.00039 31.5 6.5 26 169-194 143-168 (199)
179 PLN00223 ADP-ribosylation fact 67.6 25 0.00054 31.5 7.4 21 248-268 19-39 (181)
180 cd04155 Arl3 Arl3 subfamily. 67.5 18 0.0004 30.9 6.3 24 246-269 14-37 (173)
181 TIGR01241 FtsH_fam ATP-depende 67.5 3.8 8.2E-05 43.0 2.5 27 249-279 91-117 (495)
182 smart00173 RAS Ras subfamily o 67.3 7.9 0.00017 32.8 4.0 21 249-269 3-23 (164)
183 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 67.2 14 0.00031 33.4 5.8 24 248-271 7-30 (182)
184 cd01896 DRG The developmentall 67.1 6 0.00013 37.5 3.5 42 247-288 1-42 (233)
185 COG1341 Predicted GTPase or GT 67.1 3.9 8.4E-05 42.9 2.4 49 230-279 58-110 (398)
186 cd00755 YgdL_like Family of ac 67.1 29 0.00063 33.4 8.2 128 97-285 52-184 (231)
187 cd02028 UMPK_like Uridine mono 67.1 3.6 7.9E-05 37.4 2.0 29 249-277 2-34 (179)
188 PRK06067 flagellar accessory p 67.0 2.7 5.8E-05 39.2 1.1 37 242-278 20-61 (234)
189 TIGR02640 gas_vesic_GvpN gas v 66.8 4.1 9E-05 39.1 2.4 28 247-274 22-50 (262)
190 PLN03110 Rab GTPase; Provision 66.6 11 0.00024 34.7 5.1 25 248-272 14-38 (216)
191 PRK08762 molybdopterin biosynt 66.5 21 0.00046 36.3 7.5 79 98-188 177-256 (376)
192 smart00534 MUTSac ATPase domai 66.5 7.5 0.00016 35.2 3.9 32 249-280 2-43 (185)
193 PRK10792 bifunctional 5,10-met 66.3 74 0.0016 32.0 11.1 147 96-273 34-186 (285)
194 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 65.5 17 0.00037 34.5 6.2 103 248-358 3-115 (222)
195 TIGR03499 FlhF flagellar biosy 65.4 4.4 9.6E-05 39.6 2.3 21 248-268 196-216 (282)
196 TIGR03420 DnaA_homol_Hda DnaA 65.3 3.6 7.8E-05 37.4 1.6 23 247-269 39-61 (226)
197 cd04131 Rnd Rnd subfamily. Th 65.2 12 0.00026 33.6 4.9 25 248-272 3-27 (178)
198 PLN03187 meiotic recombination 65.1 37 0.00081 34.7 8.9 25 243-267 122-147 (344)
199 PF01745 IPT: Isopentenyl tran 65.1 3.8 8.2E-05 40.1 1.7 65 249-316 4-86 (233)
200 PRK10867 signal recognition pa 65.1 4.4 9.5E-05 42.6 2.3 32 247-278 101-137 (433)
201 cd03284 ABC_MutS1 MutS1 homolo 65.1 10 0.00022 35.6 4.6 32 249-280 33-74 (216)
202 PRK14526 adenylate kinase; Pro 65.0 4.1 8.9E-05 38.4 1.9 24 249-272 3-27 (211)
203 PRK06851 hypothetical protein; 64.9 18 0.00038 37.5 6.6 115 249-372 33-178 (367)
204 PRK00023 cmk cytidylate kinase 64.9 28 0.00061 33.0 7.5 71 295-373 143-222 (225)
205 cd02021 GntK Gluconate kinase 64.8 5.2 0.00011 34.3 2.4 21 249-269 2-22 (150)
206 PRK13601 putative L7Ae-like ri 64.5 34 0.00074 28.2 7.0 52 150-203 16-69 (82)
207 PRK09183 transposase/IS protei 64.4 4.8 0.0001 39.0 2.3 48 218-276 85-136 (259)
208 PF01695 IstB_IS21: IstB-like 64.2 4.3 9.3E-05 37.1 1.9 51 217-278 29-83 (178)
209 cd04125 RabA_like RabA-like su 64.1 11 0.00024 33.3 4.5 23 249-271 3-25 (188)
210 cd04106 Rab23_lke Rab23-like s 64.0 15 0.00033 30.9 5.1 21 249-269 3-23 (162)
211 PF01202 SKI: Shikimate kinase 63.9 39 0.00085 29.7 7.8 142 175-370 10-157 (158)
212 PTZ00202 tuzin; Provisional 63.8 29 0.00062 37.8 8.0 99 226-357 271-370 (550)
213 TIGR00231 small_GTP small GTP- 63.8 5 0.00011 32.3 2.0 34 247-280 2-35 (161)
214 cd04115 Rab33B_Rab33A Rab33B/R 63.6 19 0.00041 31.2 5.7 25 247-271 3-27 (170)
215 PRK12298 obgE GTPase CgtA; Rev 63.6 4.8 0.0001 41.5 2.3 35 246-280 159-193 (390)
216 KOG0780 Signal recognition par 63.5 5.2 0.00011 42.4 2.5 41 234-274 86-133 (483)
217 PRK14494 putative molybdopteri 63.3 4.7 0.0001 39.0 2.0 28 249-276 4-35 (229)
218 PRK14974 cell division protein 63.3 5.5 0.00012 40.5 2.6 28 248-275 142-173 (336)
219 PRK12723 flagellar biosynthesi 63.2 4.9 0.00011 41.7 2.2 22 247-268 175-196 (388)
220 PRK06851 hypothetical protein; 63.1 12 0.00025 38.8 4.9 117 249-372 217-361 (367)
221 cd04149 Arf6 Arf6 subfamily. 63.0 41 0.00089 29.5 7.8 23 246-268 9-31 (168)
222 PRK14731 coaE dephospho-CoA ki 62.8 5.6 0.00012 36.9 2.4 27 249-275 8-34 (208)
223 TIGR00064 ftsY signal recognit 62.7 5.2 0.00011 39.2 2.2 26 249-274 75-104 (272)
224 cd04144 Ras2 Ras2 subfamily. 62.7 13 0.00027 33.2 4.6 20 249-268 2-21 (190)
225 cd04152 Arl4_Arl7 Arl4/Arl7 su 62.7 25 0.00053 31.3 6.4 21 248-268 5-25 (183)
226 PHA02530 pseT polynucleotide k 62.7 5.6 0.00012 38.1 2.4 21 249-269 5-25 (300)
227 cd01892 Miro2 Miro2 subfamily. 62.7 8 0.00017 33.9 3.2 28 249-276 7-34 (169)
228 TIGR01242 26Sp45 26S proteasom 62.6 8 0.00017 38.8 3.6 46 218-268 127-178 (364)
229 TIGR02236 recomb_radA DNA repa 62.4 5.6 0.00012 38.8 2.4 25 243-267 91-116 (310)
230 cd04150 Arf1_5_like Arf1-Arf5- 62.0 45 0.00097 28.8 7.7 21 249-269 3-23 (159)
231 PRK03992 proteasome-activating 61.9 7.6 0.00016 39.7 3.3 48 217-269 135-188 (389)
232 cd01867 Rab8_Rab10_Rab13_like 61.9 19 0.00041 31.0 5.4 23 249-271 6-28 (167)
233 cd01394 radB RadB. The archaea 61.7 6.7 0.00015 35.9 2.7 34 243-276 15-53 (218)
234 cd03114 ArgK-like The function 61.3 6 0.00013 35.0 2.2 26 249-274 2-31 (148)
235 smart00177 ARF ARF-like small 61.3 40 0.00086 29.7 7.4 22 247-268 14-35 (175)
236 cd04501 SGNH_hydrolase_like_4 61.3 26 0.00057 30.6 6.2 51 144-194 82-150 (183)
237 TIGR02880 cbbX_cfxQ probable R 61.1 3.9 8.5E-05 40.0 1.1 26 247-272 59-88 (284)
238 cd01840 SGNH_hydrolase_yrhL_li 61.0 17 0.00037 31.5 5.0 87 99-191 25-119 (150)
239 cd01861 Rab6 Rab6 subfamily. 61.0 23 0.00049 29.8 5.6 30 248-277 2-31 (161)
240 PRK14489 putative bifunctional 60.9 5.8 0.00013 40.2 2.3 121 138-277 103-240 (366)
241 PRK08306 dipicolinate synthase 60.7 15 0.00032 36.3 5.0 93 150-274 87-179 (296)
242 PRK08727 hypothetical protein; 60.7 5.8 0.00013 37.5 2.1 31 249-279 44-78 (233)
243 cd04116 Rab9 Rab9 subfamily. 60.6 11 0.00023 32.4 3.5 23 247-269 6-28 (170)
244 COG3839 MalK ABC-type sugar tr 60.5 4.1 8.8E-05 41.7 1.1 19 249-267 32-50 (338)
245 PRK10528 multifunctional acyl- 60.5 19 0.00042 32.5 5.4 48 144-191 94-151 (191)
246 cd01123 Rad51_DMC1_radA Rad51_ 60.5 5.2 0.00011 36.8 1.7 20 249-268 22-41 (235)
247 cd01124 KaiC KaiC is a circadi 60.3 4 8.7E-05 35.8 0.9 26 249-274 2-31 (187)
248 TIGR03881 KaiC_arch_4 KaiC dom 60.3 4.2 9.1E-05 37.5 1.1 36 243-278 16-56 (229)
249 cd04154 Arl2 Arl2 subfamily. 60.3 40 0.00086 29.3 7.2 23 247-269 15-37 (173)
250 PRK05583 ribosomal protein L7A 60.3 43 0.00093 28.6 7.1 43 160-204 37-79 (104)
251 cd01489 Uba2_SUMO Ubiquitin ac 60.3 26 0.00056 35.5 6.7 81 97-188 40-121 (312)
252 cd04128 Spg1 Spg1p. Spg1p (se 60.1 16 0.00034 32.8 4.7 21 249-269 3-23 (182)
253 PRK05541 adenylylsulfate kinas 59.9 4.9 0.00011 35.6 1.4 20 249-268 10-29 (176)
254 PF08477 Miro: Miro-like prote 59.7 5.2 0.00011 32.3 1.4 24 249-272 2-25 (119)
255 cd04110 Rab35 Rab35 subfamily. 59.6 23 0.00049 32.0 5.7 25 247-271 7-31 (199)
256 PRK12724 flagellar biosynthesi 59.6 6 0.00013 41.8 2.2 20 249-268 226-245 (432)
257 cd00984 DnaB_C DnaB helicase C 59.5 64 0.0014 29.7 8.8 29 243-271 9-38 (242)
258 PTZ00133 ADP-ribosylation fact 59.5 46 0.00099 29.7 7.6 22 247-268 18-39 (182)
259 cd04121 Rab40 Rab40 subfamily. 59.5 19 0.00041 33.0 5.2 22 247-268 7-28 (189)
260 PRK05703 flhF flagellar biosyn 59.4 6.6 0.00014 41.0 2.4 21 248-268 223-243 (424)
261 PRK14495 putative molybdopteri 59.3 6.6 0.00014 41.8 2.4 28 249-276 4-35 (452)
262 cd04175 Rap1 Rap1 subgroup. T 59.3 25 0.00054 30.0 5.6 32 247-279 2-33 (164)
263 cd01120 RecA-like_NTPases RecA 59.2 8.3 0.00018 32.0 2.6 30 249-278 2-35 (165)
264 PHA02244 ATPase-like protein 59.1 4.9 0.00011 41.9 1.4 28 248-279 121-148 (383)
265 PRK15424 propionate catabolism 59.1 22 0.00048 38.5 6.3 41 247-288 243-293 (538)
266 cd01865 Rab3 Rab3 subfamily. 59.1 21 0.00045 30.7 5.1 26 249-274 4-29 (165)
267 PF00910 RNA_helicase: RNA hel 59.1 4.8 0.0001 33.4 1.1 21 249-269 1-21 (107)
268 TIGR02237 recomb_radB DNA repa 59.0 7.9 0.00017 35.1 2.6 38 242-279 7-49 (209)
269 TIGR00679 hpr-ser Hpr(Ser) kin 58.8 25 0.00054 35.7 6.3 100 143-272 67-172 (304)
270 TIGR00750 lao LAO/AO transport 58.8 22 0.00047 35.0 5.8 30 247-276 35-68 (300)
271 PRK08533 flagellar accessory p 58.7 7.7 0.00017 36.8 2.6 31 247-277 25-59 (230)
272 cd01866 Rab2 Rab2 subfamily. 58.7 21 0.00046 30.8 5.2 23 247-269 5-27 (168)
273 PRK09361 radB DNA repair and r 58.6 7.9 0.00017 35.6 2.6 37 242-278 18-59 (225)
274 PF09439 SRPRB: Signal recogni 58.5 5.3 0.00011 37.4 1.4 22 248-269 5-26 (181)
275 cd04117 Rab15 Rab15 subfamily. 58.3 20 0.00042 31.0 4.9 23 249-271 3-25 (161)
276 PRK05600 thiamine biosynthesis 58.3 30 0.00065 35.5 6.9 78 97-187 82-161 (370)
277 TIGR02655 circ_KaiC circadian 58.1 7.1 0.00015 41.1 2.4 24 247-270 22-45 (484)
278 cd04177 RSR1 RSR1 subgroup. R 58.1 14 0.0003 31.9 3.9 21 249-269 4-24 (168)
279 cd04137 RheB Rheb (Ras Homolog 57.9 23 0.00049 30.8 5.2 29 249-277 4-32 (180)
280 PRK07283 hypothetical protein; 57.6 48 0.001 27.8 6.9 41 160-202 38-78 (98)
281 cd03280 ABC_MutS2 MutS2 homolo 57.5 42 0.00092 30.6 7.1 46 216-271 7-59 (200)
282 cd04142 RRP22 RRP22 subfamily. 57.4 31 0.00068 31.6 6.3 22 248-269 2-23 (198)
283 PRK07878 molybdopterin biosynt 57.4 37 0.0008 34.9 7.4 78 97-187 83-162 (392)
284 TIGR03574 selen_PSTK L-seryl-t 57.3 7 0.00015 36.9 2.0 20 249-268 2-21 (249)
285 PRK14734 coaE dephospho-CoA ki 57.1 8.2 0.00018 35.8 2.4 28 249-276 4-31 (200)
286 cd01825 SGNH_hydrolase_peri1 S 57.0 31 0.00068 30.0 6.0 27 168-194 123-149 (189)
287 PRK15116 sulfur acceptor prote 57.0 56 0.0012 32.4 8.3 82 98-190 72-154 (268)
288 PRK10416 signal recognition pa 56.7 7.5 0.00016 39.0 2.3 26 249-274 117-146 (318)
289 cd00876 Ras Ras family. The R 56.7 27 0.00058 29.0 5.3 31 249-280 2-32 (160)
290 KOG3354 Gluconate kinase [Carb 56.5 8.1 0.00018 36.5 2.2 24 249-272 15-39 (191)
291 KOG3327 Thymidylate kinase/ade 56.4 47 0.001 32.2 7.3 90 265-372 104-195 (208)
292 COG0552 FtsY Signal recognitio 56.3 8.5 0.00018 39.6 2.6 84 249-347 142-253 (340)
293 TIGR01425 SRP54_euk signal rec 56.2 7.4 0.00016 41.0 2.2 30 247-276 101-134 (429)
294 PRK04175 rpl7ae 50S ribosomal 56.2 56 0.0012 28.6 7.3 42 160-203 50-92 (122)
295 cd01828 sialate_O-acetylestera 56.0 29 0.00062 30.0 5.5 48 145-192 72-134 (169)
296 CHL00200 trpA tryptophan synth 56.0 24 0.00052 34.7 5.5 117 134-253 93-231 (263)
297 PRK06696 uridine kinase; Valid 55.9 8.6 0.00019 35.8 2.4 29 249-277 25-57 (223)
298 PRK09267 flavodoxin FldA; Vali 55.9 96 0.0021 27.5 8.9 71 244-315 78-157 (169)
299 TIGR01650 PD_CobS cobaltochela 55.9 7.2 0.00016 39.8 2.0 45 226-280 54-99 (327)
300 PF02374 ArsA_ATPase: Anion-tr 55.8 30 0.00066 34.4 6.3 66 249-314 4-82 (305)
301 PRK03692 putative UDP-N-acetyl 55.8 55 0.0012 31.9 7.9 101 95-204 103-204 (243)
302 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 55.5 32 0.00069 32.9 6.2 29 243-271 10-38 (232)
303 cd04176 Rap2 Rap2 subgroup. T 55.5 14 0.0003 31.4 3.4 22 248-269 3-24 (163)
304 PRK00955 hypothetical protein; 55.4 26 0.00056 38.8 6.2 109 240-353 7-127 (620)
305 PF01583 APS_kinase: Adenylyls 55.3 7.5 0.00016 35.6 1.8 21 249-269 5-25 (156)
306 PRK14192 bifunctional 5,10-met 55.3 1.5E+02 0.0033 29.5 11.0 145 95-273 33-186 (283)
307 cd01822 Lysophospholipase_L1_l 55.2 89 0.0019 26.8 8.4 46 144-189 87-142 (177)
308 PRK14171 bifunctional 5,10-met 55.2 1.1E+02 0.0024 30.9 10.1 149 95-273 32-186 (288)
309 PF13407 Peripla_BP_4: Peripla 55.0 24 0.00051 32.2 5.0 72 111-191 16-89 (257)
310 PTZ00369 Ras-like protein; Pro 54.9 14 0.0003 33.0 3.4 23 246-268 5-27 (189)
311 PRK06835 DNA replication prote 54.9 12 0.00025 38.0 3.3 44 228-278 172-219 (329)
312 cd01834 SGNH_hydrolase_like_2 54.9 39 0.00084 29.2 6.2 29 169-197 134-162 (191)
313 COG1125 OpuBA ABC-type proline 54.6 6.2 0.00014 39.9 1.2 14 249-262 30-43 (309)
314 KOG0744 AAA+-type ATPase [Post 54.5 8.3 0.00018 40.2 2.1 112 227-350 160-298 (423)
315 cd01863 Rab18 Rab18 subfamily. 54.4 25 0.00054 29.6 4.8 21 249-269 3-23 (161)
316 PF12627 PolyA_pol_RNAbd: Prob 54.2 9.8 0.00021 28.5 2.0 33 298-339 1-33 (64)
317 COG4525 TauB ABC-type taurine 54.2 7.8 0.00017 38.1 1.8 31 249-279 34-70 (259)
318 PRK09519 recA DNA recombinatio 54.1 18 0.00038 41.2 4.8 69 189-267 11-81 (790)
319 PRK14186 bifunctional 5,10-met 54.1 67 0.0015 32.5 8.4 148 95-273 32-185 (297)
320 cd00820 PEPCK_HprK Phosphoenol 54.1 8.8 0.00019 33.1 1.9 19 249-267 18-36 (107)
321 PTZ00170 D-ribulose-5-phosphat 54.0 1.1E+02 0.0024 29.1 9.6 24 230-253 173-201 (228)
322 TIGR03878 thermo_KaiC_2 KaiC d 54.0 9.4 0.0002 36.8 2.3 36 242-277 31-71 (259)
323 TIGR00959 ffh signal recogniti 53.9 8.6 0.00019 40.4 2.2 30 247-276 100-134 (428)
324 TIGR00152 dephospho-CoA kinase 53.7 9.5 0.00021 34.4 2.2 28 249-276 2-30 (188)
325 PRK12475 thiamine/molybdopteri 53.7 44 0.00095 33.9 7.1 79 98-188 66-147 (338)
326 PTZ00361 26 proteosome regulat 53.6 8.4 0.00018 40.6 2.1 39 227-269 197-240 (438)
327 TIGR02881 spore_V_K stage V sp 53.4 7.8 0.00017 37.0 1.7 21 248-268 44-64 (261)
328 TIGR00635 ruvB Holliday juncti 53.3 8.4 0.00018 37.0 1.9 25 248-272 32-57 (305)
329 cd01897 NOG NOG1 is a nucleola 53.3 9.6 0.00021 32.5 2.1 30 249-278 3-32 (168)
330 PRK05201 hslU ATP-dependent pr 53.1 6.8 0.00015 41.6 1.3 31 246-280 50-80 (443)
331 PF11009 DUF2847: Protein of u 53.1 25 0.00055 30.5 4.6 66 139-204 2-77 (105)
332 PRK11823 DNA repair protein Ra 52.9 28 0.00061 36.5 5.8 109 243-357 76-207 (446)
333 cd04146 RERG_RasL11_like RERG/ 52.9 16 0.00035 31.2 3.4 20 249-268 2-21 (165)
334 cd04101 RabL4 RabL4 (Rab-like4 52.8 37 0.0008 28.7 5.6 22 248-269 2-23 (164)
335 TIGR00041 DTMP_kinase thymidyl 52.8 33 0.00071 30.6 5.5 68 293-366 128-195 (195)
336 PRK07411 hypothetical protein; 52.7 45 0.00097 34.4 7.1 78 97-187 79-158 (390)
337 PRK06893 DNA replication initi 52.7 9.9 0.00022 35.7 2.2 31 249-279 42-76 (229)
338 PRK05800 cobU adenosylcobinami 52.7 10 0.00022 34.6 2.2 21 249-269 4-24 (170)
339 PRK14190 bifunctional 5,10-met 52.6 1.2E+02 0.0026 30.5 9.9 149 95-274 32-186 (284)
340 cd04141 Rit_Rin_Ric Rit/Rin/Ri 52.6 42 0.0009 29.6 6.1 22 248-269 4-25 (172)
341 PRK14176 bifunctional 5,10-met 52.6 76 0.0016 32.0 8.5 148 95-273 38-191 (287)
342 PF13479 AAA_24: AAA domain 52.3 7.8 0.00017 36.0 1.5 18 249-266 6-23 (213)
343 PF02421 FeoB_N: Ferrous iron 52.2 10 0.00022 34.5 2.2 32 249-280 3-34 (156)
344 PLN02772 guanylate kinase 52.2 83 0.0018 33.2 9.0 115 249-367 138-266 (398)
345 PRK05597 molybdopterin biosynt 52.2 48 0.001 33.7 7.1 78 97-187 69-148 (355)
346 COG3842 PotA ABC-type spermidi 52.2 8.1 0.00018 39.8 1.7 24 244-267 28-52 (352)
347 PRK05428 HPr kinase/phosphoryl 52.1 35 0.00076 34.7 6.1 100 143-272 67-172 (308)
348 cd04111 Rab39 Rab39 subfamily. 51.9 40 0.00087 31.0 6.1 22 248-269 4-25 (211)
349 COG0536 Obg Predicted GTPase [ 51.9 29 0.00064 36.2 5.6 36 245-280 158-193 (369)
350 PRK13125 trpA tryptophan synth 51.8 25 0.00055 33.6 4.9 111 139-253 85-214 (244)
351 PRK05480 uridine/cytidine kina 51.8 8.1 0.00018 35.2 1.5 20 249-268 9-28 (209)
352 PF13472 Lipase_GDSL_2: GDSL-l 51.5 43 0.00094 27.7 5.7 48 145-192 89-153 (179)
353 cd04105 SR_beta Signal recogni 51.5 52 0.0011 30.3 6.7 22 248-269 2-23 (203)
354 cd00544 CobU Adenosylcobinamid 51.5 12 0.00025 34.3 2.4 28 249-276 2-30 (169)
355 PF01926 MMR_HSR1: 50S ribosom 51.4 10 0.00022 31.0 1.8 33 248-280 1-34 (116)
356 PRK14493 putative bifunctional 51.4 10 0.00022 37.5 2.1 31 249-280 4-38 (274)
357 cd04153 Arl5_Arl8 Arl5/Arl8 su 51.3 81 0.0018 27.6 7.7 23 246-268 15-37 (174)
358 TIGR03128 RuMP_HxlA 3-hexulose 51.1 1.6E+02 0.0035 26.8 9.8 83 99-191 24-112 (206)
359 cd01829 SGNH_hydrolase_peri2 S 51.1 41 0.00088 29.8 5.8 48 145-192 95-153 (200)
360 PRK14169 bifunctional 5,10-met 51.0 40 0.00086 33.8 6.2 149 95-274 30-184 (282)
361 cd04147 Ras_dva Ras-dva subfam 51.0 28 0.00061 31.3 4.8 20 249-268 2-21 (198)
362 PRK14183 bifunctional 5,10-met 51.0 2.1E+02 0.0046 28.8 11.3 148 95-273 31-184 (281)
363 PRK07952 DNA replication prote 50.9 47 0.001 32.3 6.6 31 248-278 101-135 (244)
364 cd01878 HflX HflX subfamily. 50.9 9.2 0.0002 34.3 1.7 31 247-277 42-72 (204)
365 TIGR02012 tigrfam_recA protein 50.8 17 0.00036 37.0 3.6 71 189-269 6-78 (321)
366 PRK01018 50S ribosomal protein 50.8 83 0.0018 26.5 7.3 44 160-204 36-79 (99)
367 PF10087 DUF2325: Uncharacteri 50.7 31 0.00067 28.3 4.6 42 159-200 52-93 (97)
368 PRK14730 coaE dephospho-CoA ki 50.7 11 0.00024 34.8 2.2 27 249-275 4-31 (195)
369 PRK03003 GTP-binding protein D 50.7 11 0.00023 39.5 2.3 51 216-278 20-71 (472)
370 cd01393 recA_like RecA is a b 50.6 11 0.00023 34.5 2.1 25 243-267 15-40 (226)
371 PRK12402 replication factor C 50.5 9.3 0.0002 36.8 1.7 22 248-269 38-59 (337)
372 COG3265 GntK Gluconate kinase 50.4 7.5 0.00016 36.2 1.0 21 252-272 1-22 (161)
373 cd01839 SGNH_arylesterase_like 50.3 55 0.0012 29.4 6.6 25 168-192 155-179 (208)
374 PRK00081 coaE dephospho-CoA ki 50.1 61 0.0013 29.7 6.9 85 270-371 107-192 (194)
375 COG0476 ThiF Dinucleotide-util 50.1 60 0.0013 30.9 7.1 82 96-188 70-151 (254)
376 cd02024 NRK1 Nicotinamide ribo 49.8 9 0.0002 35.7 1.5 21 249-269 2-22 (187)
377 cd00227 CPT Chloramphenicol (C 49.8 49 0.0011 29.4 6.1 60 295-370 113-174 (175)
378 cd04107 Rab32_Rab38 Rab38/Rab3 49.7 13 0.00029 33.4 2.5 20 249-268 3-22 (201)
379 PRK05342 clpX ATP-dependent pr 49.6 9.3 0.0002 39.8 1.7 34 242-279 104-137 (412)
380 PRK04301 radA DNA repair and r 49.5 11 0.00024 37.2 2.1 25 243-267 98-123 (317)
381 TIGR00416 sms DNA repair prote 49.3 17 0.00038 38.2 3.6 28 329-357 193-221 (454)
382 PRK14529 adenylate kinase; Pro 49.3 10 0.00023 36.3 1.8 25 249-273 3-28 (223)
383 PRK14172 bifunctional 5,10-met 49.1 1.6E+02 0.0036 29.5 10.2 147 96-273 33-185 (278)
384 TIGR02533 type_II_gspE general 49.1 31 0.00068 36.7 5.5 73 103-187 292-364 (486)
385 PRK05642 DNA replication initi 49.1 12 0.00026 35.4 2.2 31 247-277 46-80 (234)
386 TIGR00235 udk uridine kinase. 49.1 9.8 0.00021 34.9 1.6 21 249-269 9-29 (207)
387 PRK08223 hypothetical protein; 48.9 30 0.00065 34.8 5.0 78 97-187 68-149 (287)
388 cd01836 FeeA_FeeB_like SGNH_hy 48.9 35 0.00077 30.0 5.0 26 168-193 136-162 (191)
389 PLN02674 adenylate kinase 48.8 11 0.00024 36.7 2.0 26 248-273 33-59 (244)
390 cd01841 NnaC_like NnaC (CMP-Ne 48.8 49 0.0011 28.6 5.8 27 168-194 116-142 (174)
391 PRK12377 putative replication 48.7 48 0.001 32.3 6.3 43 227-276 89-135 (248)
392 PF06745 KaiC: KaiC; InterPro 48.5 6.3 0.00014 36.3 0.2 105 247-356 20-159 (226)
393 PRK00698 tmk thymidylate kinas 48.4 1.4E+02 0.0031 26.5 8.9 73 293-372 128-202 (205)
394 PRK07667 uridine kinase; Provi 48.3 13 0.00028 34.0 2.2 20 249-268 20-39 (193)
395 PRK08116 hypothetical protein; 48.2 13 0.00028 36.3 2.3 28 249-276 117-148 (268)
396 cd01875 RhoG RhoG subfamily. 48.1 38 0.00082 30.4 5.2 22 248-269 5-26 (191)
397 TIGR03029 EpsG chain length de 48.0 27 0.00059 33.2 4.5 110 143-274 16-136 (274)
398 cd04102 RabL3 RabL3 (Rab-like3 47.9 42 0.00091 31.3 5.6 21 249-269 3-23 (202)
399 PF04670 Gtr1_RagA: Gtr1/RagA 47.7 7.3 0.00016 37.6 0.5 13 249-261 2-14 (232)
400 PRK07773 replicative DNA helic 47.5 62 0.0013 37.0 7.8 50 242-307 212-262 (886)
401 TIGR00630 uvra excinuclease AB 47.4 12 0.00026 43.1 2.2 102 249-370 25-141 (924)
402 cd00157 Rho Rho (Ras homology) 47.4 13 0.00029 31.4 2.1 23 249-271 3-25 (171)
403 PF01121 CoaE: Dephospho-CoA k 47.3 13 0.00029 34.3 2.1 31 249-279 3-33 (180)
404 cd01899 Ygr210 Ygr210 subfamil 47.3 11 0.00025 37.8 1.8 31 249-279 1-31 (318)
405 PRK13974 thymidylate kinase; P 47.2 1E+02 0.0022 28.6 8.0 72 292-372 134-206 (212)
406 PTZ00106 60S ribosomal protein 46.9 81 0.0018 27.2 6.7 45 159-204 44-88 (108)
407 PRK07933 thymidylate kinase; V 46.8 15 0.00033 34.4 2.4 26 249-274 3-32 (213)
408 PF01656 CbiA: CobQ/CobB/MinD/ 46.8 13 0.00029 32.5 2.0 27 252-278 5-35 (195)
409 TIGR00041 DTMP_kinase thymidyl 46.7 14 0.00031 32.9 2.2 28 249-276 6-37 (195)
410 PRK13768 GTPase; Provisional 46.5 13 0.00028 35.7 2.0 28 249-276 5-36 (253)
411 TIGR03600 phage_DnaB phage rep 46.5 49 0.0011 33.9 6.3 26 242-267 189-215 (421)
412 PRK12338 hypothetical protein; 46.3 14 0.0003 37.6 2.3 34 339-374 173-206 (319)
413 COG4988 CydD ABC-type transpor 46.3 15 0.00033 40.2 2.7 83 193-280 291-387 (559)
414 PF07905 PucR: Purine cataboli 46.2 37 0.00081 29.1 4.6 52 137-188 50-105 (123)
415 PRK00349 uvrA excinuclease ABC 46.2 14 0.0003 42.7 2.5 102 249-370 29-145 (943)
416 PRK09354 recA recombinase A; P 46.1 22 0.00049 36.6 3.7 69 189-267 11-81 (349)
417 PRK09825 idnK D-gluconate kina 46.0 12 0.00025 34.1 1.5 20 249-268 6-25 (176)
418 PF05707 Zot: Zonular occluden 46.0 14 0.00029 33.9 2.0 31 249-279 3-40 (193)
419 PLN02318 phosphoribulokinase/u 46.0 16 0.00035 40.6 2.9 47 216-269 42-88 (656)
420 PRK14175 bifunctional 5,10-met 45.7 1.7E+02 0.0036 29.5 9.7 149 95-274 32-186 (286)
421 PLN02924 thymidylate kinase 45.6 73 0.0016 30.3 6.9 74 292-377 135-208 (220)
422 cd01537 PBP1_Repressors_Sugar_ 45.6 1.2E+02 0.0026 26.8 7.9 74 106-190 12-87 (264)
423 PRK00698 tmk thymidylate kinas 45.6 12 0.00026 33.4 1.5 20 249-268 6-25 (205)
424 PRK05595 replicative DNA helic 45.6 87 0.0019 32.6 8.0 27 242-268 196-223 (444)
425 TIGR03453 partition_RepA plasm 45.4 51 0.0011 33.5 6.2 78 190-274 47-137 (387)
426 cd04127 Rab27A Rab27a subfamil 45.4 14 0.00031 31.9 2.0 25 248-272 6-30 (180)
427 PLN03071 GTP-binding nuclear p 45.0 38 0.00083 31.4 4.8 24 244-267 11-34 (219)
428 TIGR02853 spore_dpaA dipicolin 45.0 15 0.00033 36.2 2.3 95 148-274 84-178 (287)
429 PRK03846 adenylylsulfate kinas 45.0 12 0.00026 34.1 1.5 22 247-268 25-46 (198)
430 PF13173 AAA_14: AAA domain 44.8 13 0.00029 31.4 1.6 21 249-269 5-25 (128)
431 PRK14189 bifunctional 5,10-met 44.8 1.5E+02 0.0033 29.8 9.3 148 95-274 32-186 (285)
432 PRK14191 bifunctional 5,10-met 44.7 3.5E+02 0.0075 27.3 12.3 148 95-273 31-184 (285)
433 cd06321 PBP1_ABC_sugar_binding 44.6 1.1E+02 0.0023 28.0 7.7 98 132-256 31-131 (271)
434 PF13191 AAA_16: AAA ATPase do 44.5 10 0.00022 32.8 0.9 20 248-267 26-45 (185)
435 TIGR01520 FruBisAldo_II_A fruc 44.3 64 0.0014 33.6 6.6 49 138-186 6-55 (357)
436 PRK05537 bifunctional sulfate 44.3 1.2E+02 0.0025 33.2 8.9 33 248-280 394-428 (568)
437 TIGR03575 selen_PSTK_euk L-ser 44.2 15 0.00032 37.6 2.1 30 249-278 2-36 (340)
438 cd01849 YlqF_related_GTPase Yl 44.1 15 0.00032 32.0 1.8 35 246-280 100-135 (155)
439 PRK14180 bifunctional 5,10-met 44.0 1.1E+02 0.0024 30.8 8.1 149 95-273 31-185 (282)
440 PF01248 Ribosomal_L7Ae: Ribos 44.0 55 0.0012 26.4 5.0 43 160-204 35-78 (95)
441 TIGR00382 clpX endopeptidase C 43.9 12 0.00027 39.2 1.5 25 244-268 114-138 (413)
442 PF10662 PduV-EutP: Ethanolami 43.9 13 0.00028 33.7 1.5 20 249-268 4-23 (143)
443 TIGR02538 type_IV_pilB type IV 43.9 44 0.00095 36.2 5.7 77 103-191 366-442 (564)
444 PLN02459 probable adenylate ki 43.7 14 0.00031 36.5 1.9 38 336-374 215-253 (261)
445 PRK14166 bifunctional 5,10-met 43.7 2.3E+02 0.005 28.5 10.3 150 95-274 30-185 (282)
446 PRK04213 GTP-binding protein; 43.6 15 0.00033 32.7 1.8 33 247-279 10-42 (201)
447 PRK14170 bifunctional 5,10-met 43.5 85 0.0018 31.6 7.2 149 95-274 31-185 (284)
448 PF07724 AAA_2: AAA domain (Cd 43.4 11 0.00024 34.3 1.0 23 246-268 3-25 (171)
449 PRK14185 bifunctional 5,10-met 43.3 2.6E+02 0.0056 28.4 10.6 146 95-271 31-182 (293)
450 CHL00176 ftsH cell division pr 42.8 13 0.00028 41.0 1.5 28 249-280 219-246 (638)
451 COG1126 GlnQ ABC-type polar am 42.8 12 0.00027 36.8 1.2 18 249-266 31-48 (240)
452 TIGR00376 DNA helicase, putati 42.8 21 0.00046 39.2 3.1 38 226-273 163-204 (637)
453 PRK13600 putative ribosomal pr 42.7 1.2E+02 0.0025 25.4 6.8 52 150-203 21-74 (84)
454 cd01887 IF2_eIF5B IF2/eIF5B (i 42.7 18 0.00039 30.6 2.1 25 249-273 3-27 (168)
455 TIGR03880 KaiC_arch_3 KaiC dom 42.7 11 0.00025 34.6 1.0 110 243-357 12-153 (224)
456 PRK08099 bifunctional DNA-bind 42.6 16 0.00034 37.9 2.1 24 249-272 222-246 (399)
457 PLN02897 tetrahydrofolate dehy 42.3 2.8E+02 0.006 28.9 10.8 149 95-273 86-241 (345)
458 PRK14181 bifunctional 5,10-met 42.1 1.1E+02 0.0024 30.9 7.8 146 95-270 26-177 (287)
459 PF00406 ADK: Adenylate kinase 42.1 14 0.00031 31.9 1.4 26 251-276 1-27 (151)
460 cd01487 E1_ThiF_like E1_ThiF_l 42.1 81 0.0018 28.7 6.4 79 97-188 40-120 (174)
461 PF08423 Rad51: Rad51; InterP 41.9 11 0.00025 36.4 0.8 17 251-267 43-59 (256)
462 PRK06761 hypothetical protein; 41.7 28 0.00061 34.8 3.6 21 248-268 5-25 (282)
463 PRK12726 flagellar biosynthesi 41.7 19 0.00041 38.0 2.5 29 247-275 207-239 (407)
464 PF07475 Hpr_kinase_C: HPr Ser 41.7 16 0.00034 34.3 1.7 24 249-272 21-44 (171)
465 COG1763 MobB Molybdopterin-gua 41.6 20 0.00043 33.1 2.3 31 250-280 6-40 (161)
466 cd03271 ABC_UvrA_II The excisi 41.6 16 0.00035 35.7 1.8 16 249-264 24-39 (261)
467 cd04164 trmE TrmE (MnmE, ThdF, 41.3 17 0.00038 29.9 1.8 30 248-277 3-33 (157)
468 PF05729 NACHT: NACHT domain 41.3 18 0.00038 30.5 1.8 19 249-267 3-21 (166)
469 COG0324 MiaA tRNA delta(2)-iso 41.2 21 0.00045 36.3 2.6 28 249-276 6-34 (308)
470 PRK00080 ruvB Holliday junctio 41.1 16 0.00034 36.1 1.7 26 248-273 53-79 (328)
471 PF02562 PhoH: PhoH-like prote 40.9 20 0.00044 34.1 2.4 19 249-267 22-40 (205)
472 PRK02261 methylaspartate mutas 40.9 2E+02 0.0043 25.5 8.5 106 258-373 19-137 (137)
473 TIGR00262 trpA tryptophan synt 40.7 49 0.0011 32.2 5.0 103 148-253 105-227 (256)
474 cd04726 KGPDC_HPS 3-Keto-L-gul 40.5 2.3E+02 0.005 25.4 9.1 103 151-254 70-187 (202)
475 TIGR03594 GTPase_EngA ribosome 40.5 27 0.00058 35.3 3.3 31 249-279 2-33 (429)
476 COG1474 CDC6 Cdc6-related prot 40.4 21 0.00045 36.7 2.5 20 249-268 45-64 (366)
477 cd01484 E1-2_like Ubiquitin ac 40.4 51 0.0011 31.9 5.0 81 97-188 40-122 (234)
478 KOG1970 Checkpoint RAD17-RFC c 40.1 1.1E+02 0.0023 34.2 7.7 127 221-357 86-237 (634)
479 COG0003 ArsA Predicted ATPase 40.1 57 0.0012 33.2 5.5 66 249-315 5-82 (322)
480 PRK10536 hypothetical protein; 40.0 17 0.00036 36.2 1.7 21 248-268 76-96 (262)
481 PHA00729 NTP-binding motif con 40.0 15 0.00033 35.6 1.4 107 248-368 19-138 (226)
482 COG1136 SalX ABC-type antimicr 39.7 13 0.00029 36.0 1.0 39 334-373 148-188 (226)
483 cd01121 Sms Sms (bacterial rad 39.7 44 0.00096 34.4 4.7 110 243-356 78-208 (372)
484 CHL00181 cbbX CbbX; Provisiona 39.6 16 0.00035 35.9 1.6 20 249-268 62-81 (287)
485 CHL00095 clpC Clp protease ATP 39.6 13 0.00029 41.7 1.1 25 245-269 199-223 (821)
486 cd01486 Apg7 Apg7 is an E1-lik 39.5 1.3E+02 0.0028 30.8 7.8 81 99-189 43-140 (307)
487 TIGR00665 DnaB replicative DNA 39.5 72 0.0016 32.7 6.2 27 242-268 190-217 (434)
488 cd03112 CobW_like The function 39.4 23 0.00051 31.4 2.4 53 249-301 3-58 (158)
489 TIGR00362 DnaA chromosomal rep 39.4 19 0.00041 36.6 2.0 29 249-277 139-173 (405)
490 COG1484 DnaC DNA replication p 39.4 20 0.00043 34.8 2.1 34 245-278 104-141 (254)
491 PRK07933 thymidylate kinase; V 39.4 1.7E+02 0.0038 27.3 8.3 74 292-370 132-211 (213)
492 TIGR01287 nifH nitrogenase iro 39.3 21 0.00045 34.0 2.1 28 249-276 3-34 (275)
493 PRK14194 bifunctional 5,10-met 39.2 76 0.0016 32.2 6.2 151 95-276 33-189 (301)
494 TIGR03345 VI_ClpV1 type VI sec 39.2 62 0.0014 37.0 6.2 22 247-268 597-618 (852)
495 PRK07688 thiamine/molybdopteri 39.0 1E+02 0.0022 31.3 7.1 41 143-187 106-146 (339)
496 PTZ00454 26S protease regulato 38.7 18 0.00039 37.5 1.7 21 249-269 182-202 (398)
497 cd04124 RabL2 RabL2 subfamily. 38.6 22 0.00047 30.6 2.0 23 249-271 3-25 (161)
498 PRK13975 thymidylate kinase; P 38.6 18 0.00038 32.3 1.5 23 249-271 5-28 (196)
499 PRK14732 coaE dephospho-CoA ki 38.5 24 0.00051 32.9 2.3 30 249-278 2-31 (196)
500 PLN03046 D-glycerate 3-kinase; 38.4 62 0.0013 34.8 5.6 109 140-278 122-248 (460)
No 1
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=100.00 E-value=2.9e-105 Score=768.28 Aligned_cols=264 Identities=45% Similarity=0.752 Sum_probs=256.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
++.++||+||||||+|||+++||+|+||+++ ++++++||||+|.+++.+++++|+++++||||||||++||++|
T Consensus 2 ~~~~~i~~VSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~~elr~~l 75 (269)
T PRK05339 2 MMKRHVFLVSDSTGETAETVGRAALSQFPNV------EFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLVDPELREIL 75 (269)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHhCCCC------CeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 5678999999999999999999999999974 6889999999999999999999988899999999999999999
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEcc
Q 016625 175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGV 254 (386)
Q Consensus 175 ~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGV 254 (386)
+++|+.+||+++|+|+|+++.|+++||++|.+ .||+.|++|++||+|||||||||+||||++|++|.+||||||||
T Consensus 76 ~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~----~pG~~~~ld~~Yf~RIeAiefal~hDDG~~~~~l~~ADIiLvGV 151 (269)
T PRK05339 76 EERCAEFGIPCIDILGPLIAPLEQELGLKPTP----EPGRTHGLDEEYFKRIEAIEFALAHDDGQDPRGLDEADVILVGV 151 (269)
T ss_pred HHHHHHcCCCEEeccHHHHHHHHHHHCcCCCC----CCCcccCCcHHHHHHHHHHHHHHHcCCCCCcCCcccCCEEEECc
Confidence 99999999999999999999999999999986 89999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 016625 255 SRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR 334 (386)
Q Consensus 255 SRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~ 334 (386)
|||||||||||||++|||||||||||+++||++||+++++|||||||||++|++||++|+++||+ |.|||+++|+
T Consensus 152 SRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~-----s~Ya~~~~i~ 226 (269)
T PRK05339 152 SRTSKTPTSLYLANKGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL-----SRYASLEQCR 226 (269)
T ss_pred CCCCCcHHHHHHHccCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-----CcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 6899999999
Q ss_pred HHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhccc
Q 016625 335 EELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 335 ~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~ 374 (386)
+||+||++||+++ ||||| ||+|||||||+.|+++++.+.
T Consensus 227 ~El~~A~~l~~k~-~~pvIdvT~kSIEEtA~~Il~~~~~~~ 266 (269)
T PRK05339 227 EELAEAERLFRRE-GIPVIDVTNKSIEETAAKILEILGLRR 266 (269)
T ss_pred HHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHHHHHHHhhc
Confidence 9999999999998 99999 999999999999999997654
No 2
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=100.00 E-value=3e-104 Score=756.70 Aligned_cols=254 Identities=52% Similarity=0.835 Sum_probs=248.9
Q ss_pred EEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHH
Q 016625 100 IYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACE 179 (386)
Q Consensus 100 IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~ 179 (386)
||+||||||+|||+++||+|+|||+. ++++++||||+|.+++.++++++++++++|||||||++||++++++|+
T Consensus 1 IyiVSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~ 74 (255)
T PF03618_consen 1 IYIVSDSTGETAETVARAALAQFPDV------EFEIHRFPFIRTEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCR 74 (255)
T ss_pred CEEEecCchHHHHHHHHHHHHhCCCC------ceEEEECCCcCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHH
Confidence 79999999999999999999999984 699999999999999999999999988999999999999999999999
Q ss_pred HcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCC
Q 016625 180 LWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGK 259 (386)
Q Consensus 180 ~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsK 259 (386)
++||+++|+|+|+++.|+++||++|.+ .||+.|+||++||+|||||||||+||||+++++|.+|||||||||||||
T Consensus 75 ~~~i~~~Dll~~~l~~l~~~lg~~p~~----~pg~~~~ld~~Yf~RIeAiefav~~DDG~~~~~l~~ADivLvGVSRtsK 150 (255)
T PF03618_consen 75 EHGIPCVDLLGPLLSALEEFLGQKPSR----KPGLQHQLDEDYFKRIEAIEFAVKHDDGKNPRGLDEADIVLVGVSRTSK 150 (255)
T ss_pred hcCCCEEeccHHHHHHHHHHHCcCccc----ccCccccchHHHHHHHHHHHHHHHccCCCCccccccCCEEEEcccccCC
Confidence 999999999999999999999999975 9999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 016625 260 TPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF 339 (386)
Q Consensus 260 TPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~ 339 (386)
|||||||||+|||||||||||+++||++||++|++|||||||||++|++||++|+++||++ .+.|||+++|++||+|
T Consensus 151 TPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~ki~GLtidp~~L~~IR~~Rl~~lg~~---~s~Ya~~~~i~~El~~ 227 (255)
T PF03618_consen 151 TPLSMYLANKGYKVANVPLVPEVPLPEELFEVDPKKIFGLTIDPERLIEIRRERLKSLGLD---DSSYADLERIEEELEY 227 (255)
T ss_pred CchhHHHHhcCcceeecCcCCCCCCCHHHHhCCCCcEEEEECCHHHHHHHHHHHHhccCCC---CCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 6899999999999999
Q ss_pred HHHHHhhCCCCcEE-ccCccHHHHHHHHH
Q 016625 340 AGRIFAQNPVWPVI-VTGKAIEETAAVVL 367 (386)
Q Consensus 340 A~~lf~k~~~~pvI-VT~kSIEEtAa~Il 367 (386)
|+++|+|+ ||||| ||+|||||||+.||
T Consensus 228 A~~l~~~~-~~pvIdvT~ksIEEtA~~Il 255 (255)
T PF03618_consen 228 AERLFRKL-GCPVIDVTNKSIEETAAEIL 255 (255)
T ss_pred HHHHHHHc-CCCEEECCCCcHHHHHHHhC
Confidence 99999998 99999 99999999999996
No 3
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=5.5e-95 Score=693.55 Aligned_cols=270 Identities=43% Similarity=0.631 Sum_probs=258.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
+..++||+||||||+|||.++||+|+||++.. +...+|.||++++.+++.+++..++.++++|.||+++++++.++
T Consensus 1 ~~~~~v~~VSDsTGeTae~~~rA~laQF~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~iv~~tiv~~~v~~~l 76 (273)
T COG1806 1 STKRHVFYVSDSTGETAELIGRAALAQFPGVK----FKAITHPFPDIRSKAQLVEVLILAAYAPGIVRPTIVDSEVRPEL 76 (273)
T ss_pred CCcceEEEEeCChHHHHHHHHHHHHHhcCCCC----CCceeeecccchhHHHHHHHHHHHhhcCCceEEEEehHHhHHHH
Confidence 35689999999999999999999999999752 34678999999999999999998888899999999999999999
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEcc
Q 016625 175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGV 254 (386)
Q Consensus 175 ~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGV 254 (386)
.+.|.+.+++|+|+|+|+++.||.+||.+|.. .+|++|.|+++||+|||||||||+||||++|++|.+||||||||
T Consensus 77 ~~~~~~~~~~~vdvl~p~i~~le~~lg~~~~~----~~g~~h~l~~~Yf~RIeAi~Fal~hDDG~~~~~l~~ADvILvGV 152 (273)
T COG1806 77 REICAEAGAPCVDVLGPLIALLESELGLEPTP----EPGRQHSLDDDYFDRIEAINFALAHDDGQSPRNLDEADVILVGV 152 (273)
T ss_pred HHHHHHcCCCeehHHHHHHHHHHHHhCCCCcc----cccccccchHHHHHHHHHHHHHHhccCCCCccccCccCEEEEee
Confidence 99999999999999999999999999999975 89999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 016625 255 SRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR 334 (386)
Q Consensus 255 SRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~ 334 (386)
|||||||||+|||++|+|||||||||+++.|.+||+..+.+||||||+|+||++||++||+++|+. ++|.|||.++|+
T Consensus 153 SRtsKTPtS~YLA~q~ikaAN~PlVpe~~~p~~L~~~~~~~i~GLti~peRL~~IR~eRL~~~~~~--~~s~Ya~~~~~~ 230 (273)
T COG1806 153 SRTSKTPTSLYLALQGIKAANYPLVPEDPEPDELPAALKPLLFGLTISPERLSAIREERLKSLGLR--ENSRYASLDQCR 230 (273)
T ss_pred ccCCCCchHHHHHHhcchhccCCcCCCCCChhhhhhcccceEEEEecCHHHHHHHHHHHhhccCCC--CccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996 489999999999
Q ss_pred HHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhcccc
Q 016625 335 EELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRKH 375 (386)
Q Consensus 335 ~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~~ 375 (386)
+||.||++||+|+ ||||| ||+|||||||+.|+.++...+.
T Consensus 231 eEl~~ae~l~~r~-~~pvidvt~~SIEEtAa~Il~~~~~~r~ 271 (273)
T COG1806 231 EELAYAEALFRRN-GIPVIDVTNKSIEETAAKILALLGLSRR 271 (273)
T ss_pred HHHHHHHHHHHHh-CCCEEecccchHHHHHHHHHHHHhcccc
Confidence 9999999999998 99999 9999999999999999966544
No 4
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=0.00091 Score=58.59 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=71.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCccccc-----------------c--CCCcEEE----E
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPKSLFQ-----------------V--DPEKVFG----L 299 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp----~v~lP~eLf~-----------------i--~~~KI~G----L 299 (386)
-|||+|.++||||-++-.|| ..||..-....+- +.+++ ++|+ + ...-+++ -
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~-~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVA-EIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHH-HHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 38999999999999999999 4688766555443 22221 1111 1 1123443 2
Q ss_pred ecChhHHH---------------HHHHHHHhhcCCCCCCCC-CCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHH
Q 016625 300 TINPLVLQ---------------SIRKARARSLGFRDEIRS-NYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEET 362 (386)
Q Consensus 300 TIdperL~---------------~IR~eRl~~lGl~~~~~S-~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEt 362 (386)
.++++.+. +++.+|+..-+-. +.. .=...+.+.+-++....+|+.. .+ +| +++.++||+
T Consensus 82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~r--p~~~~~~~~~~i~~~~~~r~~~y~~a-d~-~Idt~~~~~~~i 157 (171)
T PRK13947 82 VLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSR--PLLMVGDPEERIKELLKEREPFYDFA-DY-TIDTGDMTIDEV 157 (171)
T ss_pred cCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCC--CCCCCCChHHHHHHHHHHHHHHHHhc-CE-EEECCCCCHHHH
Confidence 35555555 3455666432211 111 1122456666666666777653 44 56 999999999
Q ss_pred HHHHHH-HHhc
Q 016625 363 AAVVLR-LYHD 372 (386)
Q Consensus 363 Aa~Il~-~~~~ 372 (386)
+..|.+ ++.+
T Consensus 158 ~~~I~~~~~~~ 168 (171)
T PRK13947 158 AEEIIKAYLKL 168 (171)
T ss_pred HHHHHHHHHhh
Confidence 999999 5543
No 5
>PRK04040 adenylate kinase; Provisional
Probab=97.21 E-value=0.0024 Score=58.80 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=80.4
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeecccc----------------------------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQK---GYKVANVPIV---------------------------------------------- 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~---G~KVAN~PLV---------------------------------------------- 279 (386)
|+|.|+++||||=++--|+++ |+++.|+==+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~~~~ 84 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEGPVI 84 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 789999999999999999854 7776654211
Q ss_pred C-C-----------CCCCcccc-ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q 016625 280 M-G-----------VELPKSLF-QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI--- 343 (386)
Q Consensus 280 p-~-----------v~lP~eLf-~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~l--- 343 (386)
- + ..+|.++| +..+..+|-|..+|+.+.+ .|++.- . .+..|.+.+.+++.++.++..
T Consensus 85 ~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~---Rrl~d~-~---R~R~~es~e~I~~~~~~a~~~a~~ 157 (188)
T PRK04040 85 VDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILM---RRLRDE-T---RRRDVETEEDIEEHQEMNRAAAMA 157 (188)
T ss_pred EeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHH---HHhccc-c---cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0 02343333 3345678999999995444 444220 0 134678888888888877774
Q ss_pred HhhCCCCcEE-ccCcc--HHHHHHHHHHHH
Q 016625 344 FAQNPVWPVI-VTGKA--IEETAAVVLRLY 370 (386)
Q Consensus 344 f~k~~~~pvI-VT~kS--IEEtAa~Il~~~ 370 (386)
|..+.+||+. |.|.. .|+++..|++++
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 4444588998 99988 999999999876
No 6
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.02 E-value=0.0039 Score=62.27 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCCCCcccccc-----CCCcEEEEecChhHHHHHH-HHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHHhhCCCCcEE
Q 016625 281 GVELPKSLFQV-----DPEKVFGLTINPLVLQSIR-KARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVI 353 (386)
Q Consensus 281 ~v~lP~eLf~i-----~~~KI~GLTIdperL~~IR-~eRl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~~~pvI 353 (386)
|+.+++.+.+. ...-.|-|+|.-+..++=| ..|.+.+.- +...| ...+.|+.+=+|--+-.+++ +||+|
T Consensus 197 Gvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r---~~~~y~~~~~~ir~iq~~l~~~a~~~-~ip~I 272 (301)
T PRK04220 197 GVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRR---PAERYLKNFEIIREINDYIVEKAKKH-GVPVI 272 (301)
T ss_pred cCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCC---chhhHHHHHHHHHHHHHHHHHHHHHh-CCCee
Confidence 56666666541 1223677887777776656 566666622 35567 89999999999999999998 99998
Q ss_pred -ccCccHHHHHHHHHHHHhccc
Q 016625 354 -VTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 354 -VT~kSIEEtAa~Il~~~~~r~ 374 (386)
.+ .|++|-+.|++.+.++.
T Consensus 273 ~n~--~i~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 273 ENI--SIEETVDKILEIITERL 292 (301)
T ss_pred cCc--cHHHHHHHHHHHHHHHH
Confidence 65 48888888888876654
No 7
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.0065 Score=54.11 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=67.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecccc-CCCCCC-------------------------ccccc------cCCCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV-MGVELP-------------------------KSLFQ------VDPEK 295 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLV-p~v~lP-------------------------~eLf~------i~~~K 295 (386)
|+|+|.++||||-++-.||+ .||..-+.==+ ....++ ..+.+ ..++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~l~~~~~ 82 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSHLLPVDY 82 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhccCCCEEEEeccccccCCCE
Confidence 89999999999999999995 58877552200 000000 00111 23456
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH--HHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhc
Q 016625 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF--AGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 296 I~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~--A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~ 372 (386)
+|-|..+++.+.+ |++.-+... .. ..+.+.+++.. ..+.|.+...+-+| ++++++||++..|++.+..
T Consensus 83 vi~L~~~~~~~~~----Rl~~R~~~~---~~--~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 83 VIVLRAHPKIIKE----RLKERGYSK---KK--ILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKS 153 (180)
T ss_pred EEEEECCHHHHHH----HHHHcCCCH---HH--HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 7889999988754 343222110 00 12334444432 12334332234455 6689999999999999976
Q ss_pred cc
Q 016625 373 RK 374 (386)
Q Consensus 373 r~ 374 (386)
..
T Consensus 154 ~~ 155 (180)
T PRK03839 154 GK 155 (180)
T ss_pred CC
Confidence 43
No 8
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.84 E-value=0.015 Score=53.88 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCCCCCcCc----EEEEccCCCCCChhhHHhhhcCcee------------------eeccccC-----------------
Q 016625 240 LPQNLQKAD----IILSGVSRTGKTPLSIYLAQKGYKV------------------ANVPIVM----------------- 280 (386)
Q Consensus 240 ~p~~L~~AD----IVLvGVSRTsKTPlSiYLA~~G~KV------------------AN~PLVp----------------- 280 (386)
+|+.+.+++ |||+|+|++|||-+.-.|+++|+++ -+|.+|.
T Consensus 3 ~~~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~ 82 (206)
T PRK14738 3 NPWLFNKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWA 82 (206)
T ss_pred CccccCCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEE
Confidence 455555444 7899999999999999999877654 2344332
Q ss_pred -------CCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh---cCCCCC---------CCCCCCCHHHHHHHHHHHH
Q 016625 281 -------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS---LGFRDE---------IRSNYSEMDYVREELEFAG 341 (386)
Q Consensus 281 -------~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~---lGl~~~---------~~S~YAs~e~I~~EL~~A~ 341 (386)
|++....-.....++++=|+++++-+..+|+.-... +-.+.. .... -+.+.+.+-+..+.
T Consensus 83 ~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~-~~~~~~~~Rl~~~~ 161 (206)
T PRK14738 83 EVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRT-ESPEELERRLATAP 161 (206)
T ss_pred EEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 000000000112356666777777666665432100 000000 0000 13345555555554
Q ss_pred HHHhhCCCCcEE-cc-CccHHHHHHHHHHHHhccccc
Q 016625 342 RIFAQNPVWPVI-VT-GKAIEETAAVVLRLYHDRKHK 376 (386)
Q Consensus 342 ~lf~k~~~~pvI-VT-~kSIEEtAa~Il~~~~~r~~~ 376 (386)
.-+.....+.++ |. ..++||+.+.|++++...+.+
T Consensus 162 ~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~ 198 (206)
T PRK14738 162 LELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAEKSR 198 (206)
T ss_pred HHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 433321134445 43 379999999999999876433
No 9
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.47 E-value=0.027 Score=49.58 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccc--------------------------------------cC----CCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPI--------------------------------------VM----GVELP 285 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PL--------------------------------------Vp----~v~lP 285 (386)
|+|+|.++||||-++-.|| ..|+..-+.=. |- ++.+.
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~ggg~vl~ 84 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIATGGGIILT 84 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEECCCCccCC
Confidence 8899999999999999999 46874444111 00 11111
Q ss_pred ccccc--cCCCcEEEEecChhHHHH-HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHH
Q 016625 286 KSLFQ--VDPEKVFGLTINPLVLQS-IRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEET 362 (386)
Q Consensus 286 ~eLf~--i~~~KI~GLTIdperL~~-IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEt 362 (386)
....+ .+.+.+|-|+.+++.+.+ |+ .|.+..+-+.-.+..+ .+.+++-++.-...|++. .+-+|-+++++||+
T Consensus 85 ~~~~~~l~~~~~~v~l~~~~~~~~~Rl~-~r~~~~~rp~~~~~~~--~~~~~~~~~~r~~~y~~~-a~~~Id~~~~~e~v 160 (171)
T PRK03731 85 EENRHFMRNNGIVIYLCAPVSVLANRLE-ANPEEDQRPTLTGKPI--SEEVAEVLAEREALYREV-AHHIIDATQPPSQV 160 (171)
T ss_pred HHHHHHHHhCCEEEEEECCHHHHHHHHc-cccccccCCcCCCCCh--HHHHHHHHHHHHHHHHHh-CCEEEcCCCCHHHH
Confidence 11000 134568888888887654 22 2211100000001111 244444445455678775 56566444899999
Q ss_pred HHHHHHHHh
Q 016625 363 AAVVLRLYH 371 (386)
Q Consensus 363 Aa~Il~~~~ 371 (386)
+..|++.+.
T Consensus 161 ~~~i~~~l~ 169 (171)
T PRK03731 161 VSEILSALA 169 (171)
T ss_pred HHHHHHHHh
Confidence 999998874
No 10
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.41 E-value=0.021 Score=56.40 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee-eccccC--CC--------CCCc--------------ccc-------cc-CCCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA-NVPIVM--GV--------ELPK--------------SLF-------QV-DPEK 295 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA-N~PLVp--~v--------~lP~--------------eLf-------~i-~~~K 295 (386)
|+|.|.|+||||-++--|+..||.+. |+|+-. .. ..+. .+. +. ..-.
T Consensus 9 i~i~G~~GsGKtt~~~~l~~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~ 88 (288)
T PRK05416 9 VIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVR 88 (288)
T ss_pred EEEECCCCCcHHHHHHHHHHcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEE
Confidence 88999999999999999998886543 444321 00 0000 000 00 0013
Q ss_pred EEEEecChhHHHH-HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhc
Q 016625 296 VFGLTINPLVLQS-IRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 296 I~GLTIdperL~~-IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~ 372 (386)
+|-|+.+++.|.+ +.+.|.+ --+. . .-...+.+++|-+.-+.+++.- . -+| +++++++|++..|++.+..
T Consensus 89 iI~L~a~~e~L~~Rl~~~rr~-RPLl---~-~~~l~e~I~~eR~~l~pl~~~A-D-ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 89 VLFLDASDEVLIRRYSETRRR-HPLS---G-DGSLLEGIELERELLAPLRERA-D-LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred EEEEECCHHHHHHHHhhcccC-CCcc---C-CccHHHHHHHHHhhhhhHHHhC-C-EEEECCCCCHHHHHHHHHHHHhc
Confidence 4555555555543 1111110 0000 1 1122333555544333344432 3 577 9999999999999998855
No 11
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.39 E-value=0.016 Score=52.24 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=65.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-----------------------------------------ccCCCCC--
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-----------------------------------------IVMGVEL-- 284 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~P-----------------------------------------LVp~v~l-- 284 (386)
|+|+|.+++|||-++-.|| ..|+..-+.= +.-+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~v~ 86 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGSVK 86 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCchhC
Confidence 8999999999999999999 4566532221 0001000
Q ss_pred -Cc--cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC--HHHHHHHHHHH-HHHHhhCCCCcEE-ccCc
Q 016625 285 -PK--SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE--MDYVREELEFA-GRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 285 -P~--eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs--~e~I~~EL~~A-~~lf~k~~~~pvI-VT~k 357 (386)
|+ .++. ..+.+|-|+.+++.+.+ |++..+. ...+.+ .+...++|-.. +.+|++. -.-+| ++++
T Consensus 87 ~~~~~~~l~-~~~~vv~L~~~~e~~~~----Ri~~~~~----rP~~~~~~~~~~~~~l~~~R~~~Y~~~-Ad~~idt~~~ 156 (172)
T PRK05057 87 SRETRNRLS-ARGVVVYLETTIEKQLA----RTQRDKK----RPLLQVDDPREVLEALANERNPLYEEI-ADVTIRTDDQ 156 (172)
T ss_pred CHHHHHHHH-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhh-CCEEEECCCC
Confidence 11 1111 23456677777776544 3332211 111221 12223344333 4557775 34577 9999
Q ss_pred cHHHHHHHHHHHHhc
Q 016625 358 AIEETAAVVLRLYHD 372 (386)
Q Consensus 358 SIEEtAa~Il~~~~~ 372 (386)
|+||++..|++.+.+
T Consensus 157 s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 157 SAKVVANQIIHMLES 171 (172)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 12
>PRK13808 adenylate kinase; Provisional
Probab=96.33 E-value=0.03 Score=56.76 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=73.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC---------------------
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG--------------------- 281 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~-------------------------PLVp~--------------------- 281 (386)
|||+|.+++|||-+|-.|| .+|+..-++ .+||+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~I 82 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFI 82 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEE
Confidence 8999999999999999999 678877774 13331
Q ss_pred -CCCCcc------c------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHHH-------
Q 016625 282 -VELPKS------L------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELEF------- 339 (386)
Q Consensus 282 -v~lP~e------L------f~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL~~------- 339 (386)
--+|.. | +.+.++.+|-|+++++.|.+--..|+..|...+ ...+. +.+.+++=|..
T Consensus 83 LDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg--~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 83 LDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG--EEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC--CccCCCCCHHHHHHHHHHHHHHhHH
Confidence 012322 0 113578899999999998874445543322111 01111 23344322221
Q ss_pred HHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 340 AGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 340 A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
..+.|... ++-+. =-..+|||+...|.+.+...
T Consensus 161 Ll~~Y~e~-~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 161 LVHYYSEK-RKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHhhcc-CcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 12345553 43233 44679999999999999654
No 13
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.017 Score=54.13 Aligned_cols=111 Identities=26% Similarity=0.379 Sum_probs=76.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-------cccCCCC----------------CCc--------------ccccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV-------PIVMGVE----------------LPK--------------SLFQV 291 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~-------PLVp~v~----------------lP~--------------eLf~i 291 (386)
|++-|-.+||||-.|=-|+-.||++..+ +++-+.+ +.+ .|+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~- 81 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHLLP- 81 (180)
T ss_pred EEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhcCC-
Confidence 7889999999999999999999999864 3433221 111 2322
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH-----HHHHHHHhhCCCCcEE-ccCccHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL-----EFAGRIFAQNPVWPVI-VTGKAIEETAAV 365 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL-----~~A~~lf~k~~~~pvI-VT~kSIEEtAa~ 365 (386)
+.+-+|=|..+|+.|- +||+.-|-+.. -=.|++..|+ ..|.+-|.. --.| +|++|.||++..
T Consensus 82 ~~dlVvVLR~~p~~L~----~RLk~RGy~~e-----KI~ENveAEi~~vi~~EA~E~~~~---v~evdtt~~s~ee~~~~ 149 (180)
T COG1936 82 DCDLVVVLRADPEVLY----ERLKGRGYSEE-----KILENVEAEILDVILIEAVERFEA---VIEVDTTNRSPEEVAEE 149 (180)
T ss_pred CCCEEEEEcCCHHHHH----HHHHHcCCCHH-----HHHHHHHHHHHHHHHHHHHHhcCc---eEEEECCCCCHHHHHHH
Confidence 4688999999999996 57865554210 0123444443 345555522 3466 999999999999
Q ss_pred HHHHHhc
Q 016625 366 VLRLYHD 372 (386)
Q Consensus 366 Il~~~~~ 372 (386)
|+++++.
T Consensus 150 i~~ii~~ 156 (180)
T COG1936 150 IIDIIGG 156 (180)
T ss_pred HHHHHcc
Confidence 9999984
No 14
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.01 E-value=0.037 Score=49.72 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=77.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCCCCCCcc--------------ccc-----------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMGVELPKS--------------LFQ----------------------- 290 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp~v~lP~e--------------Lf~----------------------- 290 (386)
|||+|+|++|||-+.-+|.+ ..-+.+ +|+.--...|.+ -|+
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~-~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~ 83 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFG-RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSK 83 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEE-EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccc-cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhcc
Confidence 79999999999999999984 333332 333322333332 111
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCC----CCC-------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE
Q 016625 291 ------VDPEKVFGLTINPLVLQSIRKARARSLGF----RDE-------IRSNYSEMDYVREELEFAGRIFAQNPVWPVI 353 (386)
Q Consensus 291 ------i~~~KI~GLTIdperL~~IR~eRl~~lGl----~~~-------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI 353 (386)
...+|+.=|+++|+-+..+|+.....+.+ +.. ..-...+.+.+.+.+..+++.|.....|-.+
T Consensus 84 ~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~v 163 (183)
T PF00625_consen 84 SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYV 163 (183)
T ss_dssp HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEE
T ss_pred chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEE
Confidence 12344555556777777776532211100 000 0112345678899999999999876557888
Q ss_pred ccCccHHHHHHHHHHHHhc
Q 016625 354 VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 354 VT~kSIEEtAa~Il~~~~~ 372 (386)
+.+.++|++...|.+++++
T Consensus 164 i~n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 164 IVNDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp EECSSHHHHHHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHh
Confidence 6677999999999998864
No 15
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.88 E-value=0.065 Score=57.15 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHHhhCCCCcEE-ccCccHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVI-VTGKAIEET 362 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---------~lf~k~~~~pvI-VT~kSIEEt 362 (386)
-..-|=|+.+++.+.+-|..+++.-|+. + .+.+.+++++..=. -+|... ..-+| +|++++||+
T Consensus 421 AdlKIfL~As~evRa~RR~~~l~~Rpll---~---~~~e~i~~~i~eRd~~D~~R~i~PLy~a~-dai~IDTs~lsieeV 493 (512)
T PRK13477 421 AELKIFLTASVEERARRRALDLQAQGFP---V---IDLEQLEAQIAERDRLDSTREIAPLRKAD-DAIELITDGLSIEEV 493 (512)
T ss_pred CCEEEEEECCHHHHHHHHHhhhhhCCCc---c---CCHHHHHHHHHHHHhhhcccccccccccC-CeEEEECCCCCHHHH
Confidence 3555779999999999777777666652 1 33578887775433 344443 44577 999999999
Q ss_pred HHHHHHHHhc
Q 016625 363 AAVVLRLYHD 372 (386)
Q Consensus 363 Aa~Il~~~~~ 372 (386)
+..|++.+..
T Consensus 494 v~~Il~~i~~ 503 (512)
T PRK13477 494 VDKIIDLYRD 503 (512)
T ss_pred HHHHHHHHHH
Confidence 9999999965
No 16
>PRK04182 cytidylate kinase; Provisional
Probab=95.86 E-value=0.064 Score=46.77 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|+|.|.++||||-++-.|| ..||.+-+
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999 57987665
No 17
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.44 E-value=0.11 Score=45.06 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|.|.++||||-++-.||+ .|+.+-|
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 78999999999999999994 6877665
No 18
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.42 E-value=0.16 Score=43.87 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
-|+|+|.++||||-++--||+ .|+...+
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 489999999999999999994 5764433
No 19
>PRK14532 adenylate kinase; Provisional
Probab=95.20 E-value=0.13 Score=46.08 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||-+|--|| .+|+..-..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 8999999999999999999 668877654
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.04 E-value=0.32 Score=42.81 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=68.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec--------c-----------------ccC------------------C---
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV--------P-----------------IVM------------------G--- 281 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~--------P-----------------LVp------------------~--- 281 (386)
|+++|+++||||-++--|| ..|+...+. + ++| +
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGF 85 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeE
Confidence 6789999999999998888 557765543 0 111 0
Q ss_pred --CCCCccc-----c---ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHHH
Q 016625 282 --VELPKSL-----F---QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRIF 344 (386)
Q Consensus 282 --v~lP~eL-----f---~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-------~~lf 344 (386)
-..|..+ | -..+..+|=|+++++.+.+-...|- .. ..-...+.+.+++-+... .+.|
T Consensus 86 i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~----~~--~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 86 LIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRA----ET--SGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccc----cc--CCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 0123221 0 0235568889999887665322332 11 112233445555554422 2345
Q ss_pred hhCCCCcEE-ccCccHHHHHHHHHHHHh
Q 016625 345 AQNPVWPVI-VTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 345 ~k~~~~pvI-VT~kSIEEtAa~Il~~~~ 371 (386)
+.. +..++ -.+.++||+...|++.+.
T Consensus 160 ~~~-~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 160 ETK-GKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred HhC-CCEEEEECCCCHHHHHHHHHHHHh
Confidence 554 44444 577999999999998875
No 21
>PRK13949 shikimate kinase; Provisional
Probab=94.91 E-value=0.2 Score=45.23 Aligned_cols=114 Identities=23% Similarity=0.300 Sum_probs=68.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc-----------------------------------------CCCCCC-
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-----------------------------------------MGVELP- 285 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLV-----------------------------------------p~v~lP- 285 (386)
|+|+|..++|||=++-.|| ..|+.+-..-.+ .|.-.|
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~~ 83 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAPC 83 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 8999999999999999999 557654333321 111111
Q ss_pred ----ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCC-CCCCC-CC-HHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 286 ----KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDE-IRSNY-SE-MDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 286 ----~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~-~~S~Y-As-~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
.+++. ..+.+|=|+.+++.+.+ |++..+-..+ -...+ .+ .+.+++-.+.=..+|++- . -+| ++++
T Consensus 84 ~~~~~~~l~-~~~~vi~L~~~~~~~~~----Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~a-d-~~id~~~~ 156 (169)
T PRK13949 84 FFDNMELMN-ASGTTVYLKVSPEVLFV----RLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQA-K-IIFNADKL 156 (169)
T ss_pred CHHHHHHHH-hCCeEEEEECCHHHHHH----HHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-C-EEEECCCC
Confidence 11221 23567888888887643 3332210000 00111 11 235555666666778774 3 566 9999
Q ss_pred cHHHHHHHHHHH
Q 016625 358 AIEETAAVVLRL 369 (386)
Q Consensus 358 SIEEtAa~Il~~ 369 (386)
+.||++..|++.
T Consensus 157 ~~~e~~~~I~~~ 168 (169)
T PRK13949 157 EDESQIEQLVQR 168 (169)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 22
>PRK13946 shikimate kinase; Provisional
Probab=94.90 E-value=0.18 Score=45.65 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.3
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
-|+|+|+++||||-++-+||+ .|+...
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 399999999999999999995 587544
No 23
>PRK02496 adk adenylate kinase; Provisional
Probab=94.68 E-value=0.32 Score=43.46 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=67.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec------------c-------------ccCC-------------C-------
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV------------P-------------IVMG-------------V------- 282 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~------------P-------------LVp~-------------v------- 282 (386)
|+++|.++||||-++-+|| .+|+...+. | ++|+ .
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~v 83 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWI 83 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEE
Confidence 8999999999999999999 567765543 1 0110 0
Q ss_pred --CCCcc------c------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-------
Q 016625 283 --ELPKS------L------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG------- 341 (386)
Q Consensus 283 --~lP~e------L------f~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~------- 341 (386)
..|.. | +...+..+|-|.++++.+. +|+..-|-. . -+.+.+++=++.-+
T Consensus 84 ldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~----~Rl~~R~~~-----d-d~~~~~~~r~~~y~~~~~~v~ 153 (184)
T PRK02496 84 LDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV----ERLLARGRK-----D-DTEEVIRRRLEVYREQTAPLI 153 (184)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH----HHHhcCCCC-----C-CCHHHHHHHHHHHHHHHHHHH
Confidence 02321 1 1124567888888888765 444333321 1 13344443333333
Q ss_pred HHHhhCCCCcEEccCccHHHHHHHHHHHHh
Q 016625 342 RIFAQNPVWPVIVTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 342 ~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~ 371 (386)
+.|+..+.+..|=.+.++||+...|.+.+.
T Consensus 154 ~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 154 DYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 377665233334566799999999998763
No 24
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=94.46 E-value=0.026 Score=56.46 Aligned_cols=29 Identities=38% Similarity=0.802 Sum_probs=25.0
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016625 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSiYLA----~~G~KVA 274 (386)
..=||.|| |=+|||||+.+||| .+|+|++
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 62 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVG 62 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEE
Confidence 45699999 99999999999999 4688876
No 25
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.40 E-value=0.22 Score=46.53 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=47.3
Q ss_pred EEEEec-ChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHH
Q 016625 296 VFGLTI-NPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 296 I~GLTI-dperL~~IR~eRl~~lGl~~~~~S~YA-s~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
.|=|.+ +++.+.+-+..|-+..+... +...|. ..+.|+.=-+|--+--+++ ++|+| .+-.++||-..+++.+
T Consensus 122 ~i~l~v~d~e~lr~Rl~~R~~~~~~~~-p~~~~~~~~~~ir~i~~~l~~~a~~~-~i~~i-~~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 122 AFYLYIRDAELHRSRLADRINYTHKNS-PGKRLAEHLPEYRTIMDYSIADARGY-NIKVI-DTDNYREARNPLLDPI 195 (197)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcccCCC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCCee-cCccHHHHHHHHHHHh
Confidence 344545 56666566666765554433 355677 5666666556666667787 99999 4446899999998865
No 26
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.36 E-value=0.46 Score=42.88 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=74.0
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeec----cccC------------------------------------CCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQK---GYKVANV----PIVM------------------------------------GVELP 285 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~---G~KVAN~----PLVp------------------------------------~v~lP 285 (386)
|||+|+|++||+-++-.|.+. +|..+-- |.-+ +++.+
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~ 84 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKE 84 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHH
Confidence 899999999999999999865 4433310 1101 11111
Q ss_pred ccccccCCCcEEEEecChhHHHHHHHHHHhhc--CC--CCC-------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 286 KSLFQVDPEKVFGLTINPLVLQSIRKARARSL--GF--RDE-------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 286 ~eLf~i~~~KI~GLTIdperL~~IR~eRl~~l--Gl--~~~-------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
..--.+..+|++=|+++++-+.++++.-.... =+ ++. ..-.=-+.+.+++-|..|++.+....-+-.++
T Consensus 85 ~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~fd~~I 164 (184)
T smart00072 85 TIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVI 164 (184)
T ss_pred HHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEE
Confidence 11111235778888888888877764311100 00 000 00001246788999999999876632355664
Q ss_pred cCccHHHHHHHHHHHHhc
Q 016625 355 TGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 355 T~kSIEEtAa~Il~~~~~ 372 (386)
.+-.++++...+.+++..
T Consensus 165 ~n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 165 VNDDLEDAYEELKEILEA 182 (184)
T ss_pred ECcCHHHHHHHHHHHHHh
Confidence 444899999999998864
No 27
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.31 E-value=0.59 Score=41.34 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||-+|-.|| ..|+..-+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 7899999999999999999 568766554
No 28
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.15 E-value=0.033 Score=56.09 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=22.6
Q ss_pred CcEEEE---ccCCCCCChhhHHhh----hcCceee
Q 016625 247 ADIILS---GVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 247 ADIVLv---GVSRTsKTPlSiYLA----~~G~KVA 274 (386)
.=||-| +|.+|||||+.+||| ++|+||+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 335655 588999999999999 3788887
No 29
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.01 E-value=0.032 Score=45.87 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|.|+|+||||=+|-.||+ +|+++-+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 78999999999999999996 4877643
No 30
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.00 E-value=0.36 Score=47.68 Aligned_cols=123 Identities=23% Similarity=0.301 Sum_probs=66.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCc-------------------cccccCCCcEEEEecC-
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPK-------------------SLFQVDPEKVFGLTIN- 302 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp----~v~lP~-------------------eLf~i~~~KI~GLTId- 302 (386)
-|+|+|.++||||-++-.|| ..|+.+-..=..- +..+++ .+..-...-|++.-..
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~ 214 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGGGI 214 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCCch
Confidence 49999999999999999999 5577433111000 221111 0000012234443222
Q ss_pred ---hh---HH------------HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHH
Q 016625 303 ---PL---VL------------QSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETA 363 (386)
Q Consensus 303 ---pe---rL------------~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtA 363 (386)
+. .| .++|.+|+..-+-..+-.+.=+..+.+++-.+.-..+|++. .+ +| ++.+++||++
T Consensus 215 v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~a-d~-~I~t~~~s~ee~~ 292 (309)
T PRK08154 215 VSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARA-DA-VVDTSGLTVAQSL 292 (309)
T ss_pred hCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC-CE-EEECCCCCHHHHH
Confidence 11 11 13456676432211000111233456655555555666654 43 67 8889999999
Q ss_pred HHHHHHHhc
Q 016625 364 AVVLRLYHD 372 (386)
Q Consensus 364 a~Il~~~~~ 372 (386)
..|++++..
T Consensus 293 ~~I~~~l~~ 301 (309)
T PRK08154 293 ARLRELVRP 301 (309)
T ss_pred HHHHHHHHH
Confidence 999998853
No 31
>PLN02200 adenylate kinase family protein
Probab=93.98 E-value=0.64 Score=44.36 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=68.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-cccC-------------------CCCCCcc--------------------
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV-PIVM-------------------GVELPKS-------------------- 287 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~-PLVp-------------------~v~lP~e-------------------- 287 (386)
|+|+|.++||||=+|-.|| .+|+..-+. -|+- +...|.+
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~IL 125 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLI 125 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEe
Confidence 7889999999999999999 568765443 1110 1112221
Q ss_pred ---------------ccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHH-------HHHHHHH
Q 016625 288 ---------------LFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNY-SEMDYVREEL-------EFAGRIF 344 (386)
Q Consensus 288 ---------------Lf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~Y-As~e~I~~EL-------~~A~~lf 344 (386)
++...++.+|-|+++++.+.+ |+..-+.. .+ .+.+.+++=+ ....+.|
T Consensus 126 DG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~----Rl~~R~~~-----r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 126 DGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVK----RVLNRNQG-----RVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred cCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHH----HHHcCcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 112346678999999987655 33222211 11 1233333333 3334456
Q ss_pred hhCCCCcEEccCccHHHHHHHHHHHHhc
Q 016625 345 AQNPVWPVIVTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 345 ~k~~~~pvIVT~kSIEEtAa~Il~~~~~ 372 (386)
++...|-+|=.+.++||+...|.+.+..
T Consensus 197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 197 SKKGKLYTINAVGTVDEIFEQVRPIFAA 224 (234)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 6542355563345999999999998865
No 32
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.77 E-value=0.92 Score=40.00 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHh
Q 016625 329 EMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 329 s~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~ 371 (386)
+.+.+++-|..+..-++....|-.++.+..++|+...|.+++.
T Consensus 137 ~~~~i~~rl~~~~~~~~~~~~~d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 137 SEEVIERRLAKAKKEIAHADEFDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred CHHHHHHHHHHHHHHHhccccCcEEEECCCHHHHHHHHHHHHh
Confidence 4556777777665544332246666444589999999988774
No 33
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.67 E-value=0.73 Score=40.78 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|||+|.|++|||=+.-.|+.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 34
>PRK06762 hypothetical protein; Provisional
Probab=93.50 E-value=0.26 Score=43.13 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|.|.++||||-++-.|+++
T Consensus 5 i~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999943
No 35
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.43 E-value=0.84 Score=40.00 Aligned_cols=29 Identities=38% Similarity=0.655 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
|+|.|+.++|||=++--||+ +|++|..++
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 78999999999999998883 488887664
No 36
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.33 E-value=1.2 Score=40.08 Aligned_cols=45 Identities=7% Similarity=0.147 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHhcc
Q 016625 329 EMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 329 s~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~~r 373 (386)
+.+.++.-+..++.-+.....+..|+.+.++||+...|.+++...
T Consensus 141 ~~~~i~~rl~~~~~~~~~~~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 141 SEEVIARRLAKAREEIAHASEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred CHHHHHHHHHHHHHHHHhHHhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 445555555554444432213556623569999999999999775
No 37
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=92.95 E-value=0.067 Score=54.18 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=25.5
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceeeec
Q 016625 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
..=||.|| |=+|||||+.+||| .+|+|++-+
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 35589988 88999999999999 468888643
No 38
>PLN02199 shikimate kinase
Probab=92.85 E-value=1.6 Score=44.02 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=89.9
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeecccc----------
Q 016625 211 APGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV---------- 279 (386)
Q Consensus 211 ~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLV---------- 279 (386)
+.|..+..|++ . +.++-+.++-+++. .-|+|+|..+||||=+.-+||+ .||.+...--+
T Consensus 77 e~~~~~~~de~-~--Lk~~a~~i~~~l~~-------~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI 146 (303)
T PLN02199 77 ETGSVYPFDED-I--LKRKAEEVKPYLNG-------RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSV 146 (303)
T ss_pred ccCCCCCCCHH-H--HHHHHHHHHHHcCC-------CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCH
Confidence 45555667776 2 77777888776543 3599999999999999999995 68765433311
Q ss_pred ------------------------------C----CCCCCccccc-cCCCcEEEEecChhHHHHHHHHHHhhcCC-----
Q 016625 280 ------------------------------M----GVELPKSLFQ-VDPEKVFGLTINPLVLQSIRKARARSLGF----- 319 (386)
Q Consensus 280 ------------------------------p----~v~lP~eLf~-i~~~KI~GLTIdperL~~IR~eRl~~lGl----- 319 (386)
- |+.++++-++ ...+.+|=|+.+++.|.+ |++.-|.
T Consensus 147 ~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~----RL~~~~~~~RPL 222 (303)
T PLN02199 147 AEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAH----RIAAVGTDSRPL 222 (303)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHH----HHhhcCCCCCCc
Confidence 0 2334444322 124567788888887765 4432111
Q ss_pred -CCCCCCCCC-CHHHHHHHHHHHHHHHhhCCCCcEE------------ccCccHHHHHHHHHHHHhcc
Q 016625 320 -RDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVI------------VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 320 -~~~~~S~YA-s~e~I~~EL~~A~~lf~k~~~~pvI------------VT~kSIEEtAa~Il~~~~~r 373 (386)
.......|. ..+.+.+=++.=+.+|++- .+.|- |+++++||++.+|++.+..-
T Consensus 223 L~~~~~d~~~~~~~~L~~L~~~R~plY~~A-d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 223 LHDESGDAYSVAFKRLSAIWDERGEAYTNA-NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHhC-CEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 000011232 1344443344444567763 44433 46999999999999988664
No 39
>PRK06526 transposase; Provisional
Probab=92.81 E-value=0.66 Score=44.96 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=38.4
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 216 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
..++...+....+.+|.-.+ -.++|+|.++||||=|+..|+ ++|++|.-+
T Consensus 79 ~~~~~~~~~~l~~~~fi~~~-----------~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 79 RSLKRDTIAHLGTLDFVTGK-----------ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CCcchHHHHHHhcCchhhcC-----------ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34667778888888887321 248999999999999999887 468887553
No 40
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.78 E-value=0.11 Score=52.35 Aligned_cols=40 Identities=45% Similarity=0.657 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCcCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016625 235 QDDGALPQNLQKADIILSG---VSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 235 hDDG~~p~~L~~ADIVLvG---VSRTsKTPlSiYLA----~~G~KVA 274 (386)
||-|.-..-=..+=||-|| |=+|||||+.+||| .+|||++
T Consensus 23 y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 23 YDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred HhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 4555444444456688888 77999999999999 5788876
No 41
>PRK13948 shikimate kinase; Provisional
Probab=92.75 E-value=1.2 Score=41.17 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=67.8
Q ss_pred cCcEEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCC-----------------------------------
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELP----------------------------------- 285 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp----~v~lP----------------------------------- 285 (386)
.+-|+|+|.++||||=+.-.||+ .|+..--.=.+- +..+|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~GgG 89 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGGG 89 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCCc
Confidence 35699999999999999999995 565422110000 11111
Q ss_pred --------ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC---CHHHHHHHHHHHHHHHhhCCCCcEE-
Q 016625 286 --------KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS---EMDYVREELEFAGRIFAQNPVWPVI- 353 (386)
Q Consensus 286 --------~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA---s~e~I~~EL~~A~~lf~k~~~~pvI- 353 (386)
+.|. +.+.+|-|+.+++.|.+ |++.=+ ...+. ..+++.+=++.=+.+|++- .-+|
T Consensus 90 ~v~~~~n~~~l~--~~g~vV~L~~~~e~l~~----Rl~~~~-----RPll~~~~~~~~l~~l~~~R~~~Y~~a--~~~i~ 156 (182)
T PRK13948 90 TFMHEENRRKLL--SRGPVVVLWASPETIYE----RTRPGD-----RPLLQVEDPLGRIRTLLNEREPVYRQA--TIHVS 156 (182)
T ss_pred EEcCHHHHHHHH--cCCeEEEEECCHHHHHH----HhcCCC-----CCCCCCCChHHHHHHHHHHHHHHHHhC--CEEEE
Confidence 0111 12457778888887765 332101 11111 2345544334445567552 4577
Q ss_pred ccCccHHHHHHHHHHHHhc
Q 016625 354 VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 354 VT~kSIEEtAa~Il~~~~~ 372 (386)
+.+++++|++..|++.+..
T Consensus 157 t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 157 TDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 42
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=92.32 E-value=0.51 Score=47.32 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
-|||.|||.+.+|||=|--.|.+.-.+|||||.+-
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT 191 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT 191 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc
Confidence 49999999999999999888887668999999763
No 43
>PRK00625 shikimate kinase; Provisional
Probab=92.27 E-value=1.5 Score=40.12 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=72.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee----------e------cc--------------------------ccC----C
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA----------N------VP--------------------------IVM----G 281 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA----------N------~P--------------------------LVp----~ 281 (386)
|+|+|..+||||=++=.||+ .|++.- + ++ .|- +
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~GGg 82 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVALGGG 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 89999999999999999995 477541 0 11 000 2
Q ss_pred CCCCcccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCc-----EE-
Q 016625 282 VELPKSLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWP-----VI- 353 (386)
Q Consensus 282 v~lP~eLf~i--~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~p-----vI- 353 (386)
+.+..+.|+. ..+.||-|+.+++.+. +|++.-++.. ...| .+.+.+-++.=..+|++.-.+. |+
T Consensus 83 ~~~~~e~~~~l~~~~~Vv~L~~~~e~l~----~Rl~~R~~~~--~~~~--~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~ 154 (173)
T PRK00625 83 TLMIEPSYAHIRNRGLLVLLSLPIATIY----QRLQKRGLPE--RLKH--APSLEEILSQRIDRMRSIADYIFSLDHVAE 154 (173)
T ss_pred ccCCHHHHHHHhcCCEEEEEECCHHHHH----HHHhcCCCCc--ccCc--HHHHHHHHHHHHHHHHHHCCEEEeCCCccc
Confidence 2333443332 2356888998977665 4554334321 1223 5667777777778888742333 57
Q ss_pred ccCccHHHHHHHHHHHH
Q 016625 354 VTGKAIEETAAVVLRLY 370 (386)
Q Consensus 354 VT~kSIEEtAa~Il~~~ 370 (386)
++++|+-..+..|+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 155 TSSESLMRACQSFCTLL 171 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999988888888754
No 44
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.23 E-value=0.11 Score=52.99 Aligned_cols=30 Identities=43% Similarity=0.699 Sum_probs=25.7
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceeee
Q 016625 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSiYLA----~~G~KVAN 275 (386)
.+-||.|| |=+|||||+.|||| ++|+|+.=
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gv 82 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGV 82 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEE
Confidence 47799999 88999999999999 57888763
No 45
>PRK08233 hypothetical protein; Provisional
Probab=92.23 E-value=1.3 Score=38.70 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=40.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHHhh-----CCCCcEE-ccCccHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQ-----NPVWPVI-VTGKAIEETAAV 365 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~~A~~lf~k-----~~~~pvI-VT~kSIEEtAa~ 365 (386)
.+.+|=|+.+++.+.+-|..|-.. +. .-.+. +.+..=+...+..|.+ .+.+.++ -+++++||+.+.
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~-~~------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~ 170 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFK-ED------TGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQ 170 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhh-hc------cccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHH
Confidence 457888888888755433344210 00 00111 2222222334444544 1133444 577899999999
Q ss_pred HHHHHhcc
Q 016625 366 VLRLYHDR 373 (386)
Q Consensus 366 Il~~~~~r 373 (386)
|.+.+..+
T Consensus 171 i~~~l~~~ 178 (182)
T PRK08233 171 IEEELYRR 178 (182)
T ss_pred HHHHHHhC
Confidence 99998754
No 46
>PRK08356 hypothetical protein; Provisional
Probab=91.93 E-value=1.8 Score=39.42 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
|+|.|.+++|||=+|-||+.+|+.
T Consensus 8 i~~~G~~gsGK~t~a~~l~~~g~~ 31 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEEKGFC 31 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCc
Confidence 789999999999999999877774
No 47
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=91.57 E-value=0.53 Score=49.12 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=30.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|||.|||-+.+|||=|---|.+.--|+||||.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT 191 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT 191 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc
Confidence 5899999999999999887888766899999986
No 48
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.13 Score=52.95 Aligned_cols=50 Identities=38% Similarity=0.608 Sum_probs=40.0
Q ss_pred HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 220 EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 220 ~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
-++|+||..-+ ..|| =.|.+..|.|||+.+||||=|.--|| |.-|||+..
T Consensus 78 YNHYKRl~~~~---~~~d----vEL~KSNILLiGPTGsGKTlLAqTLA----k~LnVPFai 127 (408)
T COG1219 78 YNHYKRLNNKE---DNDD----VELSKSNILLIGPTGSGKTLLAQTLA----KILNVPFAI 127 (408)
T ss_pred hhHHHHHhccC---CCCc----eeeeeccEEEECCCCCcHHHHHHHHH----HHhCCCeee
Confidence 45789998777 4444 67999999999999999997776666 457999875
No 49
>PRK14528 adenylate kinase; Provisional
Probab=91.00 E-value=0.7 Score=42.09 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=69.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee------------cc-------------ccC-------------CC-------
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN------------VP-------------IVM-------------GV------- 282 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN------------~P-------------LVp-------------~v------- 282 (386)
|+++|.+++|||-+|-+|| .+|+.+.+ .| ++| ..
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~v 83 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFL 83 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence 8999999999999999999 55665531 11 111 00
Q ss_pred --CCCcc------ccc------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-------HHHHH
Q 016625 283 --ELPKS------LFQ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-------LEFAG 341 (386)
Q Consensus 283 --~lP~e------Lf~------i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-------L~~A~ 341 (386)
.+|.. |++ ...+.++-|+++++.+.+--..|....|-++ -+.+.+++= ..-.-
T Consensus 84 iDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~d------d~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 84 LDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRAD------DNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCC------CCHHHHHHHHHHHHHHhHHHH
Confidence 13432 221 3567899999999988764344432223221 124444443 34445
Q ss_pred HHHhhCCCCcEE-ccCccHHHHHHHHHHH
Q 016625 342 RIFAQNPVWPVI-VTGKAIEETAAVVLRL 369 (386)
Q Consensus 342 ~lf~k~~~~pvI-VT~kSIEEtAa~Il~~ 369 (386)
+.|+.. ++-+. =.++|+||+...|.+.
T Consensus 158 ~~y~~~-~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 158 DFYAAQ-KKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHhC-CCEEEEECCCCHHHHHHHHHHh
Confidence 667775 54233 5568999999988754
No 50
>PRK14530 adenylate kinase; Provisional
Probab=90.93 E-value=3.3 Score=38.25 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVA 274 (386)
-|+|+|.++||||=++--|| .+|+..-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 48999999999999999999 6787544
No 51
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.83 E-value=3.9 Score=37.65 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=69.6
Q ss_pred EEEEccCCCCCChhhHHhhhc--CceeeeccccCCCCCCccc------------c-------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKVANVPIVMGVELPKSL------------F------------------------- 289 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KVAN~PLVp~v~lP~eL------------f------------------------- 289 (386)
|||+|+|++|||-+.=+|.+. ++ ..-+|.+-.-+=|.|. |
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~ 85 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKA 85 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHH
Confidence 899999999999999999854 22 1223444222222211 0
Q ss_pred ----ccCCCcEEEEecChhHHHHHHHHHHh----hcCCCCC---------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcE
Q 016625 290 ----QVDPEKVFGLTINPLVLQSIRKARAR----SLGFRDE---------IRSNYSEMDYVREELEFAGRIFAQNPVWPV 352 (386)
Q Consensus 290 ----~i~~~KI~GLTIdperL~~IR~eRl~----~lGl~~~---------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pv 352 (386)
....+|++=|+++++-+..+|+. .. ..=+..+ ..-.--+.+.+++=|+.+..-+.+...|-.
T Consensus 86 ~i~~~~~~g~~~i~d~~~~g~~~l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~ 164 (186)
T PRK14737 86 FIEDAFKEGRSAIMDIDVQGAKIIKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDY 164 (186)
T ss_pred HHHHHHHcCCeEEEEcCHHHHHHHHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCE
Confidence 13346778888888888887752 10 0001000 000112445566655555443333224777
Q ss_pred E-ccCccHHHHHHHHHHHHhc
Q 016625 353 I-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 353 I-VT~kSIEEtAa~Il~~~~~ 372 (386)
| +.+ ..|++-..+.+++..
T Consensus 165 vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 165 KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred EEECc-CHHHHHHHHHHHHhc
Confidence 7 666 999999999888754
No 52
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=89.45 E-value=3.7 Score=44.92 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=43.0
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhC---------CCCcEE-ccCccHHHHHHHH
Q 016625 297 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQN---------PVWPVI-VTGKAIEETAAVV 366 (386)
Q Consensus 297 ~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~---------~~~pvI-VT~kSIEEtAa~I 366 (386)
|=||.+++.=.+-|-..++..|. =.+.+.+.+|+.. |.....+ .+--+| +|+.+|||+...|
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~-------~~~~~~~~~~~~~-Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i 649 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGI-------SANIADLLADLEA-RDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQV 649 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH-HhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHH
Confidence 44777777655544444444443 1567778887743 2222221 123478 9999999999999
Q ss_pred HHHHhc
Q 016625 367 LRLYHD 372 (386)
Q Consensus 367 l~~~~~ 372 (386)
++++.+
T Consensus 650 ~~~i~~ 655 (661)
T PRK11860 650 LDWWQE 655 (661)
T ss_pred HHHHHh
Confidence 999965
No 53
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.44 E-value=1.6 Score=40.68 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=68.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC---------CCCCCccccc--------------------c-------
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---------GVELPKSLFQ--------------------V------- 291 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp---------~v~lP~eLf~--------------------i------- 291 (386)
-|||||.-++|||-..-.||+. -|+|++. +..+|+ +|+ .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~----L~~~F~D~D~~Ie~~~g~sI~e-IF~~~GE~~FR~~E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKA----LNLPFIDTDQEIEKRTGMSIAE-IFEEEGEEGFRRLETEVLKELLEEDNAVIAT 78 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHH----cCCCcccchHHHHHHHCcCHHH-HHHHHhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 4899999999999999999953 5677775 222211 111 1
Q ss_pred ---------------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHHhhCCCCcEE-c
Q 016625 292 ---------------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVI-V 354 (386)
Q Consensus 292 ---------------~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~~A~~lf~k~~~~pvI-V 354 (386)
....+|=|..+++.|.+ |-.+-+.. |--.=.+. +.+++=++.=.-+|++. .--++ +
T Consensus 79 GGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~-Rl~~~~~R-----Pll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~ 151 (172)
T COG0703 79 GGGAVLSEENRNLLKKRGIVVYLDAPFETLYE-RLQRDRKR-----PLLQTEDPREELEELLEERQPLYREV-ADFIIDT 151 (172)
T ss_pred CCccccCHHHHHHHHhCCeEEEEeCCHHHHHH-HhccccCC-----CcccCCChHHHHHHHHHHHHHHHHHh-CcEEecC
Confidence 23467888888888875 22211111 11111223 22333333444577776 55566 7
Q ss_pred cCccHHHHHHHHHHHHhc
Q 016625 355 TGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 355 T~kSIEEtAa~Il~~~~~ 372 (386)
++++ ++++..|++.+..
T Consensus 152 ~~~~-~~v~~~i~~~l~~ 168 (172)
T COG0703 152 DDRS-EEVVEEILEALEG 168 (172)
T ss_pred CCCc-HHHHHHHHHHHHH
Confidence 7777 9999999998864
No 54
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=89.17 E-value=4.9 Score=36.47 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=78.5
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~ 173 (386)
..+..||++-.+- +.++.+...+..+||++ .+.-+..++. +.++.+++++.+.+.+ .+|+--+=.|.==..
T Consensus 46 ~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l------~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 117 (172)
T PF03808_consen 46 QRGKRIFLLGGSE-EVLEKAAANLRRRYPGL------RIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGAPKQERW 117 (172)
T ss_pred HcCCeEEEEeCCH-HHHHHHHHHHHHHCCCe------EEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 4567999998876 56778888899999984 3444455555 8888999999987666 599999988876677
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 174 l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+.+.....+.+.+=-+|-.++.++......|
T Consensus 118 ~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP 148 (172)
T PF03808_consen 118 IARHRQRLPAGVIIGVGGAFDFLAGKVKRAP 148 (172)
T ss_pred HHHHHHHCCCCEEEEECchhhhhccCcCccC
Confidence 8888888888777778988888887655555
No 55
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=88.95 E-value=1.3 Score=47.40 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=37.8
Q ss_pred hhhhhhhhCCCCCCCCC----CCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 227 EAIEFTIKQDDGALPQN----LQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~----L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
.|=.||..=.-|....= =..|||+|||.+.+|||-|-=-|.+.--|+||||.+
T Consensus 136 ~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT 192 (500)
T PRK12296 136 KAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFT 192 (500)
T ss_pred CCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcc
Confidence 34445554444443221 124999999999999999988888666789999976
No 56
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.78 E-value=0.33 Score=36.93 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
+++.|-.++|||+++..||+ .|+||..+-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 56778899999999999883 399998776
No 57
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.45 E-value=2.9 Score=35.83 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=50.4
Q ss_pred HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016625 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVL 189 (386)
Q Consensus 110 TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll 189 (386)
-|+.+.+.+...+|++ ++..+.-.+ +.+.+.+.+++ --+||.++-+.+.+..+.+.|.++++|+++..
T Consensus 57 Ka~~~~~~l~~~np~~------~v~~~~~~~--~~~~~~~~~~~----~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDV------EVEAIPEKI--DEENIEELLKD----YDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTS------EEEEEESHC--SHHHHHHHHHT----SSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCce------eeeeeeccc--ccccccccccC----CCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4777778888888874 343333333 66777776633 25999999999999999999999999999863
No 58
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=88.43 E-value=3.9 Score=38.85 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=78.9
Q ss_pred EEEEccCCCCCChhhHHhhhc--CceeeeccccC----------------------------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKVANVPIVM---------------------------------------------- 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KVAN~PLVp---------------------------------------------- 280 (386)
+|++||+++|||-.+=.+.+. ++|..||=.++
T Consensus 7 vvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iivDt 86 (189)
T COG2019 7 VVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIVDT 86 (189)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEEec
Confidence 799999999999888777742 78889986552
Q ss_pred ----------CCCCCcc-ccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---HHHhh
Q 016625 281 ----------GVELPKS-LFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---RIFAQ 346 (386)
Q Consensus 281 ----------~v~lP~e-Lf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---~lf~k 346 (386)
=--||.. |-+++++.||=|.-||+.+..-| ++.- ...-.|-+.+.|++=.+.++ --|.-
T Consensus 87 H~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR---~~D~----~r~Rd~es~e~i~eHqe~nR~aA~a~A~ 159 (189)
T COG2019 87 HATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERR---LRDS----RRDRDVESVEEIREHQEMNRAAAMAYAI 159 (189)
T ss_pred cceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHH---hccc----ccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 0235663 44678889999999999877632 3210 12346788888875443322 22333
Q ss_pred CCCCcEE-ccCc--cHHHHHHHHHHHHh
Q 016625 347 NPVWPVI-VTGK--AIEETAAVVLRLYH 371 (386)
Q Consensus 347 ~~~~pvI-VT~k--SIEEtAa~Il~~~~ 371 (386)
+.|.+|- |.+. --||.|..|++.+.
T Consensus 160 ~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 160 LLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3577888 8888 77888888887764
No 59
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.40 E-value=2.4 Score=42.47 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=76.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce-eeeccccC-------------------------CCCCCccccc--------cCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYK-VANVPIVM-------------------------GVELPKSLFQ--------VDPE 294 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~K-VAN~PLVp-------------------------~v~lP~eLf~--------i~~~ 294 (386)
||+-|.|++|||=-.=-|=-.||- |-|+|+.. +-.....+++ -..-
T Consensus 4 vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~ 83 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKKGIDV 83 (284)
T ss_pred EEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhcCCce
Confidence 688899999999877777788865 56888653 0011111211 1123
Q ss_pred cEEEEecChhHHHHH-HHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhc
Q 016625 295 KVFGLTINPLVLQSI-RKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 295 KI~GLTIdperL~~I-R~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~ 372 (386)
+|+=|+.+.+.|.+- -+.|++. =| ...-..++.|++|-+.-..|-..- . -|| +|+.++-|....|.+.+..
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~H-PL----~~~~~~le~I~~Er~~L~~lr~~A-d-~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRH-PL----SSDGSLLEAIEKERELLEPLRERA-D-LVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCC-CC----CCCCCcHHHHHHHHHHHHHHHHhC-C-EEEECCCCCHHHHHHHHHHHhcc
Confidence 566677777777652 2233321 11 122345788999987777776553 4 488 9999999999999998865
Q ss_pred c
Q 016625 373 R 373 (386)
Q Consensus 373 r 373 (386)
.
T Consensus 157 ~ 157 (284)
T PF03668_consen 157 D 157 (284)
T ss_pred C
Confidence 4
No 60
>PRK14527 adenylate kinase; Provisional
Probab=88.04 E-value=5.7 Score=35.90 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVA 274 (386)
|+++|.+++|||-++-.|| .+|+...
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 8899999999999999998 4565443
No 61
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=87.90 E-value=1.1 Score=38.66 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=30.0
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccC
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVD 292 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~ 292 (386)
-|+++|-+.+|||-+...|.+..+ ..++|-..+.+.....++++
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~ 47 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVN 47 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEEC
Confidence 389999999999999888886544 45666555444433333443
No 62
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=87.75 E-value=1.6 Score=41.28 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~K 272 (386)
|.|.|.|+||||-++-.|| +.|+.
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999998 56643
No 63
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=0.32 Score=51.78 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=34.0
Q ss_pred hhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 232 TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 232 AlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
+..-|+-..--.|++..|+|+|+|+||||=|.-=|| |+-|||++-
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLA----r~ldVPfaI 256 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLA----RVLDVPFAI 256 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHH----HHhCCCeEE
Confidence 334444443457999999999999999996655555 789999984
No 64
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.58 E-value=0.4 Score=39.18 Aligned_cols=24 Identities=50% Similarity=0.671 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
|+|.|+++||||=++-.||+ .|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 68999999999999999994 5543
No 65
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=86.64 E-value=1.3 Score=44.44 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
|+|+|+++||||-++.-||+ .|..
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCCc
Confidence 89999999999999999994 4443
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=86.52 E-value=1.6 Score=36.71 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|+++|.+.+|||=+...|.+.-+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~ 25 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRF 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999988888875544
No 67
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=86.47 E-value=3.3 Score=37.16 Aligned_cols=112 Identities=18% Similarity=0.070 Sum_probs=65.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecC---hhHHHHHHHHHHhhcCCCCC-
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTIN---PLVLQSIRKARARSLGFRDE- 322 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTId---perL~~IR~eRl~~lGl~~~- 322 (386)
.-||++|.+++|||=+...|.+. +..-++|...+...|...+..+.+++--..+| -+++..++..... |-...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~--~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD-EFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR--GANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC-cCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhc--CCCEEE
Confidence 45999999999999999988754 55556666667777777776665544444444 4666666666542 21100
Q ss_pred ---CCCCCCCHHHHHHHHH-HHHHHHhhCCCCcEE-ccCccHHHHH
Q 016625 323 ---IRSNYSEMDYVREELE-FAGRIFAQNPVWPVI-VTGKAIEETA 363 (386)
Q Consensus 323 ---~~S~YAs~e~I~~EL~-~A~~lf~k~~~~pvI-VT~kSIEEtA 363 (386)
....-.+.+.+.+++. ..+.... . +.|+| |-+|.=-...
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~-~-~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAP-D-DVPILLVGNKIDLFDE 126 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCC-C-CceEEEEecccccccc
Confidence 1122233334444433 3333322 1 57899 8777654443
No 68
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=86.44 E-value=4 Score=43.65 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=44.7
Q ss_pred EEEecChhHHHHHH-HHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHhcc
Q 016625 297 FGLTINPLVLQSIR-KARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 297 ~GLTIdperL~~IR-~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~~r 373 (386)
|=++|+-+..+.=| ..|-+.++.+. +...|.. .+.|+.=-+|--+--+++ ++|+| .+-.|++|-..|++.+-++
T Consensus 387 flv~isdeeeH~~Rf~~Ra~~~~~~r-~~~ky~~~f~~IR~IQdyLv~~A~~~-~ipvI-~n~nid~tv~~~l~~i~~~ 462 (475)
T PRK12337 387 MLVTLPDEALHRRRFELRDRETGASR-PRERYLRHFEEIRLIQDHLLRLARQE-GVPVL-PGEDLDESIDKALEVVLRR 462 (475)
T ss_pred EEEEECCHHHHHHHHHHHhhhccCCC-chhHHHHhHHHHHHHHHHHHHHHHHc-CCCee-cCccHHHHHHHHHHHHHHH
Confidence 46777777766644 34545555433 3455643 344443334545555677 99998 5556788888888776554
No 69
>PLN02748 tRNA dimethylallyltransferase
Probab=86.32 E-value=1.9 Score=45.82 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=48.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc---------ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP---------IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLG 318 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~P---------LVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lG 318 (386)
|+|+|+++||||=|++-|| +.|+.+-|.= +.-.=+.+++.-.++ +-++|.
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~Vp-HHLid~------------------- 84 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVP-HHLLGV------------------- 84 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCC-CeeEee-------------------
Confidence 8999999999999999999 4554433321 111222233332222 223332
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 319 FRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 319 l~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
-+ ++..|+--+-+++=...-++|..+. ..||||
T Consensus 85 -v~-p~e~ysv~~F~~~A~~~I~~I~~rg-k~PIlV 117 (468)
T PLN02748 85 -IS-PSVEFTAKDFRDHAVPLIEEILSRN-GLPVIV 117 (468)
T ss_pred -cC-CCCcCcHHHHHHHHHHHHHHHHhcC-CCeEEE
Confidence 22 3445665555555556666777776 677774
No 70
>PLN02796 D-glycerate 3-kinase
Probab=86.14 E-value=4.4 Score=41.64 Aligned_cols=111 Identities=24% Similarity=0.246 Sum_probs=69.9
Q ss_pred ccccCCHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 016625 138 FSGIDDVEQLMVIIKQAAKDGAMLV-YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNF 216 (386)
Q Consensus 138 ~p~V~t~e~l~~il~~a~~~~~iV~-~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~ 216 (386)
-|.|.+.+.+.+.| ..|+++= +-|...++++.+.+.... ...+...|+... .
T Consensus 8 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-----------~ 60 (347)
T PLN02796 8 PPDVSDVADLREFI----CSGPLISKLGLTAEDVAESIDEWIAH------------GLRLCRLLQFDE-----------L 60 (347)
T ss_pred CCCcccHHHHHHHH----hcCcchhhhCCCHHHHHHHHHHHHHH------------HHHHHHHcCCCc-----------c
Confidence 56677777777764 3455443 445566777776665431 566777777766 3
Q ss_pred CCcHHHHhhhh------------hhhhhhh-CCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 217 PLSEEYFRRIE------------AIEFTIK-QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 217 ~ld~~YF~RIe------------AIEFAlk-hDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
.|++.|..|+. -+++.++ +-+|...+-+- |.|+|.|+||||=++-.|+. .|++++.+.+
T Consensus 61 ~l~~~~~~~~~~~~~P~~~~il~~l~~~~~~~~~G~~~~pli---IGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~Isi 136 (347)
T PLN02796 61 SLSASQKARVYHYYLPVYLWCEDQLEAHRSKFKDGDEIPPLV---IGISAPQGCGKTTLVFALVYLFNATGRRAASLSI 136 (347)
T ss_pred cCCHHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCCCEE---EEEECCCCCcHHHHHHHHHHHhcccCCceeEEEE
Confidence 35666766665 3333331 12444322222 77899999999999988872 3777888775
No 71
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=86.06 E-value=0.83 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhc-Ccee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK-GYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~-G~KV 273 (386)
=|+|+|.|+||||=|+-.||++ |+.+
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4899999999999999999954 6544
No 72
>PRK13975 thymidylate kinase; Provisional
Probab=86.04 E-value=3.9 Score=36.55 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=43.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHH---HHhhCCCCcEE-ccCccHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGR---IFAQNPVWPVI-VTGKAIEETAA 364 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~---lf~k~~~~pvI-VT~kSIEEtAa 364 (386)
.++.+|-|+++++.+.+ |+..-+. ..+.+ .+++.++...--. .+.+. +|-+| ++++++||+++
T Consensus 113 ~pd~vi~L~~~~e~~~~----Rl~~r~~-----~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~Id~~~~~~eev~~ 182 (196)
T PRK13975 113 KPDLVFLLDVDIEEALK----RMETRDK-----EIFEKKEFLKKVQEKYLELANNEKFMPKY-GFIVIDTTNKSIEEVFN 182 (196)
T ss_pred CCCEEEEEcCCHHHHHH----HHhccCc-----cccchHHHHHHHHHHHHHHHhhcccCCcC-CEEEEECCCCCHHHHHH
Confidence 35679999999998865 3321121 12333 2344443322111 11233 57788 88999999999
Q ss_pred HHHHHHhcc
Q 016625 365 VVLRLYHDR 373 (386)
Q Consensus 365 ~Il~~~~~r 373 (386)
.|++.+..+
T Consensus 183 ~I~~~i~~~ 191 (196)
T PRK13975 183 EILNKIKDK 191 (196)
T ss_pred HHHHHHHHh
Confidence 999988654
No 73
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=85.36 E-value=2.1 Score=38.23 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=63.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccC--------------------------CCcEEEEecC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVD--------------------------PEKVFGLTIN 302 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~--------------------------~~KI~GLTId 302 (386)
|+|||-+++|||=+-..|...-+.+.+++-..+...+..++.++ .--++.|..|
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D 82 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence 89999999999999877764434443443333322222111111 1125666665
Q ss_pred hh---HHHHHHHHHH--hhcCCCC-C--CCCCCCCHHHHH-HHHHHHHHHHhhCCCCcEE-c---cCccHHHHHHHHHHH
Q 016625 303 PL---VLQSIRKARA--RSLGFRD-E--IRSNYSEMDYVR-EELEFAGRIFAQNPVWPVI-V---TGKAIEETAAVVLRL 369 (386)
Q Consensus 303 pe---rL~~IR~eRl--~~lGl~~-~--~~S~YAs~e~I~-~EL~~A~~lf~k~~~~pvI-V---T~kSIEEtAa~Il~~ 369 (386)
.. .+.+++.... ..++... + --.+-.|+..-+ ...+.++++.+++ ++|++ + ++..|+|.-..|.+.
T Consensus 83 ~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 83 ITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 3333333221 1111100 0 001234442100 1123466666676 78877 5 566678877777776
Q ss_pred Hhccc
Q 016625 370 YHDRK 374 (386)
Q Consensus 370 ~~~r~ 374 (386)
+..+.
T Consensus 162 ~~~~~ 166 (191)
T cd04112 162 LKHRK 166 (191)
T ss_pred HHHhc
Confidence 65553
No 74
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=85.32 E-value=4.9 Score=40.34 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=93.6
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH
Q 016625 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM 170 (386)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~Tlvd~el 170 (386)
...++.+++|.|-- .++..++.=......+ ++.++.+.+|---|.+++.+.|+++.++. +|+++==.=+.+
T Consensus 29 ~~P~Lavilvgddp--aS~~YV~~K~k~~~~i----Gi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hl 102 (283)
T COG0190 29 FKPGLAVILVGDDP--ASQVYVRSKKKAAEEI----GIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHL 102 (283)
T ss_pred CCceEEEEEeCCCH--HHHHHHHHHHHHHHHc----CCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 35678899998877 5555555544444432 35688999999999999999999986554 566642221122
Q ss_pred --HHHHHHHHHHcCCCEeecchH-HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016625 171 --AESAKKACELWGIPSTDVLGP-ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (386)
Q Consensus 171 --r~~l~~~~~~~~i~~vDll~p-~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~A 247 (386)
...++.-+-+++ ||=|.| -++.|.. | ++.-.|- .| .||=.-+++=+. +|...
T Consensus 103 d~~~il~~I~p~KD---VDG~hp~N~g~L~~--~-~~~~~PC-Tp--------------~gi~~ll~~~~i----~l~Gk 157 (283)
T COG0190 103 DEQKLLQAIDPEKD---VDGFHPYNLGKLAQ--G-EPGFLPC-TP--------------AGIMTLLEEYGI----DLRGK 157 (283)
T ss_pred CHHHHHhhcCcCCC---ccccChhHhcchhc--C-CCCCCCC-CH--------------HHHHHHHHHhCC----CCCCC
Confidence 234444444443 476777 2333321 1 1111000 22 334334444443 77778
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
++|+||-|..-=-|++++|.+.|+.|.
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVt 184 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVT 184 (283)
T ss_pred EEEEECCCCcCcHHHHHHHHhCCCEEE
Confidence 899999999999999999999988764
No 75
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=85.19 E-value=1.2 Score=44.83 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=29.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|||.|||-+.+|||=|---|.+.--+|||||.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT 191 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT 191 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc
Confidence 3999999999999999887787666899999975
No 76
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=85.05 E-value=4.4 Score=43.43 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=42.1
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHh
Q 016625 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 295 KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~ 371 (386)
.+|=|+.+++.|.+ |++.-+ ....+. +.+.+++=++.=+.+|++. ---+| ++++++||++..|++.+.
T Consensus 105 ~vv~L~~~~~~l~~----Rl~~~~----~RPll~~~~~~~~~~l~~~R~~~Y~~~-Ad~~i~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 105 RVVYLDADPKEAME----RANRGG----GRPMLNGDANKRWKKLFKQRDPVFRQV-ANVHVHTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred EEEEEECCHHHHHH----HHhCCC----CCCCCCCCcHHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 56677777777664 332111 011221 2344433223335677775 33466 999999999999999886
Q ss_pred ccc
Q 016625 372 DRK 374 (386)
Q Consensus 372 ~r~ 374 (386)
...
T Consensus 176 ~~~ 178 (542)
T PRK14021 176 ERT 178 (542)
T ss_pred hcc
Confidence 543
No 77
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.95 E-value=0.58 Score=41.93 Aligned_cols=28 Identities=36% Similarity=0.647 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~ 276 (386)
|.++|.++||||-++.+|+. +||||+=+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 67899999999999999883 59999844
No 78
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.92 E-value=0.57 Score=40.83 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G 270 (386)
|+|+|.|+||||=++..||+ .|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999994 45
No 79
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.51 E-value=0.71 Score=39.25 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVA 274 (386)
|+|+|+++||||-++-.|| ..|+..-
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999 4555443
No 80
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.49 E-value=4 Score=42.35 Aligned_cols=17 Identities=53% Similarity=0.714 Sum_probs=15.0
Q ss_pred EEccCCCCCChhhHHhh
Q 016625 251 LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 251 LvGVSRTsKTPlSiYLA 267 (386)
|-|.|++|||=+++||.
T Consensus 94 ~~gdsg~GKttllL~l~ 110 (402)
T COG3598 94 LYGDSGVGKTTLLLYLC 110 (402)
T ss_pred EecCCcccHhHHHHHHH
Confidence 44999999999999985
No 81
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=83.75 E-value=2.7 Score=34.53 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
||+|+|.+++|||-|--.|...-+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC
Confidence 699999999999999888875433
No 82
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=83.65 E-value=0.35 Score=42.35 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 282 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v 282 (386)
|+|.|-..||||=|+--||.+ |+|+|+|.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-----g~~~v~E~ 30 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-----GYPVVPEY 30 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-----T-EEE--T
T ss_pred EEEECCCCCCHHHHHHHHHHc-----CCeEEeec
Confidence 899999999999999999976 77788743
No 83
>PRK06217 hypothetical protein; Validated
Probab=83.39 E-value=0.82 Score=41.15 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
|+|+|.|+||||=++--||+ .|+.+-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 89999999999999999994 465543
No 84
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=83.11 E-value=0.48 Score=38.56 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
|+|-|.++||||=++-||++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999774
No 85
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=82.86 E-value=0.96 Score=40.06 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||=+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 8999999999999999999 458777664
No 86
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=82.75 E-value=8.5 Score=40.94 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=62.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCc-------------------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPK------------------------------------- 286 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp----~v~lP~------------------------------------- 286 (386)
|+|+|..+||||=++-.|| ..|+.+...=-+- +..+++
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv~ 82 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVI 82 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcccc
Confidence 8999999999999999999 5676543211100 111110
Q ss_pred -----cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHH
Q 016625 287 -----SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIE 360 (386)
Q Consensus 287 -----eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIE 360 (386)
+++. +..+|-|+.+++.|. +|++.-+- +-... ..+.+++-++.=+.+|++. -+| ++++|++
T Consensus 83 ~~~~r~~l~--~~~vI~L~as~e~l~----~Rl~~~~R---PLl~~-~~e~l~~L~~~R~~lY~~~---~~IDt~~~s~~ 149 (488)
T PRK13951 83 DPENRELLK--KEKTLFLYAPPEVLM----ERVTTENR---PLLRE-GKERIREIWERRKQFYTEF---RGIDTSKLNEW 149 (488)
T ss_pred ChHHHHHHh--cCeEEEEECCHHHHH----HHhccCCC---CCccc-cHHHHHHHHHHHHHHHhcc---cEEECCCCCHH
Confidence 1121 233666777776544 45532121 11111 2456665444445667664 378 9999998
Q ss_pred HHHHHHHH
Q 016625 361 ETAAVVLR 368 (386)
Q Consensus 361 EtAa~Il~ 368 (386)
|++..|+-
T Consensus 150 e~~~~iv~ 157 (488)
T PRK13951 150 ETTALVVL 157 (488)
T ss_pred HHHHHHHH
Confidence 88877754
No 87
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=82.74 E-value=5.4 Score=35.70 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcC--------------CHHHHHHHHHHHHHcCCCEeecchHHHHHHHH
Q 016625 144 VEQLMVIIKQAAKDG-AMLVYTLA--------------DPSMAESAKKACELWGIPSTDVLGPITEAIAS 198 (386)
Q Consensus 144 ~e~l~~il~~a~~~~-~iV~~Tlv--------------d~elr~~l~~~~~~~~i~~vDll~p~i~~le~ 198 (386)
.+.+.++++.+++.+ .+|+.|.. ...+.+.+++.|+++|++++|+..++...++.
T Consensus 93 ~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~ 162 (198)
T cd01821 93 KEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNAASRALYEA 162 (198)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHHHHHHHHHH
Confidence 455666677766555 34554421 24678899999999999999999888776554
No 88
>PRK07261 topology modulation protein; Provisional
Probab=82.56 E-value=0.93 Score=40.83 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|+|.|+||||=++--|+. .|+.+-+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~ 30 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLH 30 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEe
Confidence 78999999999999999994 4554433
No 89
>PLN02165 adenylate isopentenyltransferase
Probab=82.46 E-value=1.4 Score=44.90 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=50.5
Q ss_pred EEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRS 325 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~-G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~--~lGl~~~~~S 325 (386)
|+|+|.++||||=|++-||.. |+ ++|.- ..+ ++.+ |+.|--.+-..-.+..+. -++.-.....
T Consensus 46 ivIiGPTGSGKStLA~~LA~~l~~-----eIIsa----Ds~-QvYk----gldIgTakpt~~er~gv~Hhli~~~~~~~~ 111 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLATRFPS-----EIINS----DKM-QVYD----GLKITTNQITIQDRRGVPHHLLGELNPDDG 111 (334)
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----ceecC----Chh-eeEC----CcccccCCCCHHHHcCCChhhhheeccccc
Confidence 999999999999999999954 54 22220 011 2222 333332222211111111 1222121123
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 326 NYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 326 ~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
.|+-.+-++.+....+++..+. +.||+|
T Consensus 112 ~~sv~~F~~~a~~~I~~i~~~~-~~PI~v 139 (334)
T PLN02165 112 ELTASEFRSLASLSISEITSRQ-KLPIVA 139 (334)
T ss_pred eeeHHHHHHHHHHHHHHHHHCC-CcEEEE
Confidence 5766666667777778888886 788774
No 90
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.36 E-value=5.5 Score=37.53 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=54.4
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.++.|+-.+..|. =|+.+++.+...+|++ ++ ..++ .+ +.+.+.+++++ --+||.++-+++.|..+
T Consensus 62 ~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~------~i--~~~~~~i-~~~~~~~~~~~----~DvVi~~~d~~~~r~~l 128 (228)
T cd00757 62 QRQILHTEADVGQPKAEAAAERLRAINPDV------EI--EAYNERL-DAENAEELIAG----YDLVLDCTDNFATRYLI 128 (228)
T ss_pred ccccccChhhCCChHHHHHHHHHHHhCCCC------EE--EEeccee-CHHHHHHHHhC----CCEEEEcCCCHHHHHHH
Confidence 4666666555664 4566666666666763 23 3332 22 45555555543 24999999999999999
Q ss_pred HHHHHHcCCCEeec
Q 016625 175 KKACELWGIPSTDV 188 (386)
Q Consensus 175 ~~~~~~~~i~~vDl 188 (386)
.++|.++++|+++.
T Consensus 129 ~~~~~~~~ip~i~~ 142 (228)
T cd00757 129 NDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999996
No 91
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=82.07 E-value=3.1 Score=41.48 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=36.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec---------cccCCCCCCccccccCCCcEEE
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV---------PIVMGVELPKSLFQVDPEKVFG 298 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~---------PLVp~v~lP~eLf~i~~~KI~G 298 (386)
|+|+|++.||||=+++=|| +.|..+-|+ ++.-.=|-|+++-.++. -.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~h-hlid 60 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPH-HLID 60 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccE-EEEE
Confidence 7999999999999999999 557666666 55556666777755543 3455
No 92
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=82.01 E-value=0.99 Score=41.50 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||-+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 8999999999999999999 578877654
No 93
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=81.86 E-value=12 Score=34.65 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPL------SIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPl------SiYLA~~G~KV 273 (386)
++|+|++++|||=+ .++||+.|..|
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 68999999999987 47888899755
No 94
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.67 E-value=1.1 Score=37.96 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=26.1
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccCC
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMG 281 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp~ 281 (386)
.|+|+|.++||||=+.-||| ..|+++--+.+-.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 48999999999999999999 45666655544443
No 95
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=81.46 E-value=7.7 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
|+++|.+++|||=+--.|.+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7999999999998877777543
No 96
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=81.23 E-value=8.9 Score=33.68 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK----GYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~----G~KVA 274 (386)
|+|+|.|+||||-++-.|+.+ |+++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 689999999999999999943 65543
No 97
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=80.99 E-value=0.97 Score=39.90 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.++|.|.||||=++-+|. .+||||+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 6789999999999999986 5799998
No 98
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=80.73 E-value=0.97 Score=40.29 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|||.|.|++|||-++-+|+..
T Consensus 5 i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999954
No 99
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.52 E-value=10 Score=32.57 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=49.9
Q ss_pred cEEEEEeCChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
++.|+-.+..| --|+.+.+.+..-+|++ +++.+.- ++.+. ...+. -.+..+||.+..+.+.+..+.+
T Consensus 41 r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v------~i~~~~~-~~~~~-~~~~~----~~~~diVi~~~d~~~~~~~l~~ 108 (143)
T cd01483 41 RQFLARQADIGKPKAEVAARRLNELNPGV------NVTAVPE-GISED-NLDDF----LDGVDLVIDAIDNIAVRRALNR 108 (143)
T ss_pred ccccCChhHCCChHHHHHHHHHHHHCCCc------EEEEEee-ecChh-hHHHH----hcCCCEEEECCCCHHHHHHHHH
Confidence 45555334445 34566666666666653 2322221 22222 22222 2334699999999999999999
Q ss_pred HHHHcCCCEeecc
Q 016625 177 ACELWGIPSTDVL 189 (386)
Q Consensus 177 ~~~~~~i~~vDll 189 (386)
+|+++++|+++.-
T Consensus 109 ~~~~~~i~~i~~~ 121 (143)
T cd01483 109 ACKELGIPVIDAG 121 (143)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999964
No 100
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=80.50 E-value=1.2 Score=37.33 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
|++.|.++||||-++--|| +.|+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~ 27 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 7899999999999999999 455543
No 101
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=80.34 E-value=13 Score=41.14 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHH-----HHH--HhhCCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 328 SEMDYVREELEFA-----GRI--FAQNPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 328 As~e~I~~EL~~A-----~~l--f~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
.+.+.|.+|+..= |.+ .....++-+| +|+.++||+...|++++.+-
T Consensus 179 ~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~ 232 (712)
T PRK09518 179 ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDA 232 (712)
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhh
Confidence 6777777776321 222 2232366788 99999999999999988654
No 102
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=80.29 E-value=8 Score=41.76 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
||++|.++||||=++--++ ..||...|-
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~g~~~vn~ 400 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPAGYKHVNA 400 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEECc
Confidence 8899999999999987666 567765543
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.01 E-value=1.3 Score=35.47 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|+|.++||||-+...+++.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999854
No 104
>PRK08328 hypothetical protein; Provisional
Probab=79.77 E-value=4.9 Score=38.23 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=52.4
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccC-CCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQF-EHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF-~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++--+..|. ....+++..+.++ |++ ++..++.--+.+.+.+++++ --+||.++-+.+.|..+
T Consensus 68 ~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v--------~v~~~~~~~~~~~~~~~l~~----~D~Vid~~d~~~~r~~l 135 (231)
T PRK08328 68 NRQILHWEEDLGKNPKPLSAKWKLERFNSDI--------KIETFVGRLSEENIDEVLKG----VDVIVDCLDNFETRYLL 135 (231)
T ss_pred ccccccChhhcCchHHHHHHHHHHHHhCCCC--------EEEEEeccCCHHHHHHHHhc----CCEEEECCCCHHHHHHH
Confidence 3556655555776 3555555555554 542 33333322255666665543 35999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.++|.++|+|+|.
T Consensus 136 ~~~~~~~~ip~i~ 148 (231)
T PRK08328 136 DDYAHKKGIPLVH 148 (231)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999987
No 105
>PRK00279 adk adenylate kinase; Reviewed
Probab=79.76 E-value=1.3 Score=40.78 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+++|.+++|||-+|-.|| ++|+..-+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 8999999999999999999 678887775
No 106
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.74 E-value=1.2 Score=46.64 Aligned_cols=30 Identities=43% Similarity=0.588 Sum_probs=24.4
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
.=|+++|+.++|||.++..|| .+|++|+=+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 458899999999999999888 357777643
No 107
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=79.35 E-value=1 Score=39.04 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=13.8
Q ss_pred CCcCcEEEEccCCCCCC
Q 016625 244 LQKADIILSGVSRTGKT 260 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKT 260 (386)
+.-=-||+-|.||||||
T Consensus 88 ~rp~SivieG~sRTGKT 104 (106)
T PF08283_consen 88 LRPISIVIEGDSRTGKT 104 (106)
T ss_pred CCCCceeEecCCccCcC
Confidence 33335999999999999
No 108
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=78.64 E-value=9.6 Score=33.98 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.-|+++|.+.+|||=+...|..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6699999999999999877774
No 109
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=78.58 E-value=1.4 Score=36.51 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
||+|+|.+.+|||-|.-.|++.++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~ 24 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKK 24 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc
Confidence 799999999999999999996444
No 110
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=78.23 E-value=5.2 Score=34.28 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=17.2
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016625 248 DIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA 267 (386)
-|+++|.+++|||=+--.|-
T Consensus 5 kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998877664
No 111
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=78.15 E-value=10 Score=33.35 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+.-|+|+|.+++|||-|--.|.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45599999999999999888874
No 112
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=78.05 E-value=7.9 Score=33.72 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|.+++|||-+-..|.+.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999998888753
No 113
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=77.94 E-value=16 Score=33.82 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=67.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~ 173 (386)
..+..||++ -++=++++.+++.+..+||++ ++.-+ .+|.+ .++-.++++++.+.+ -+|+--+=.|.=-..
T Consensus 46 ~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l------~i~g~-~g~f~-~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 46 KEKLPIFLY-GGKPDVLQQLKVKLIKEYPKL------KIVGA-FGPLE-PEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HcCCeEEEE-CCCHHHHHHHHHHHHHHCCCC------EEEEE-CCCCC-hHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 455799999 556668999999999999985 34444 67775 455567888886666 488888888775556
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 174 l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+.+.....+..++==.|-.++.++......|
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP 147 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAP 147 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCC
Confidence 6665555444443335666666664443333
No 114
>PLN02840 tRNA dimethylallyltransferase
Probab=77.89 E-value=4.7 Score=42.46 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
|+|+|++++|||=+++.||+ .|.
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 99999999999999999995 453
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=77.67 E-value=11 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
|+|||-+++|||=+-..|........++.
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~ 30 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIV 30 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceec
Confidence 79999999999998888876544455554
No 116
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=77.64 E-value=3.3 Score=45.35 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=64.8
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeeccc-cCCCCCCccccccCCCcEEE--Ee--cChhHHHHHHHHHHhhcCC
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPI-VMGVELPKSLFQVDPEKVFG--LT--INPLVLQSIRKARARSLGF 319 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PL-Vp~v~lP~eLf~i~~~KI~G--LT--IdperL~~IR~eRl~~lGl 319 (386)
..-=|||+|--+||||-|-|=|+.--| +-|||= .|.+-+|...+ +.++-- .+ -+++....+|+|= +.+..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef-~~~VP~rl~~i~IPadvt---Pe~vpt~ivD~ss~~~~~~~l~~Ei-rkA~v 82 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEF-VDAVPRRLPRILIPADVT---PENVPTSIVDTSSDSDDRLCLRKEI-RKADV 82 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhc-cccccccCCccccCCccC---cCcCceEEEecccccchhHHHHHHH-hhcCE
Confidence 334499999999999999999996644 555554 46899997665 344321 12 3344444445442 22222
Q ss_pred CCCCCCCC-----CCHHHHHH-HHHHHHHHHhhCCCCcEE-ccCc
Q 016625 320 RDEIRSNY-----SEMDYVRE-ELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 320 ~~~~~S~Y-----As~e~I~~-EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
.-..| .+.++|+. =|=.-+++|-+....||| |-+|
T Consensus 83 ---i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK 124 (625)
T KOG1707|consen 83 ---ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNK 124 (625)
T ss_pred ---EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeec
Confidence 12345 45566653 355667777555578999 9766
No 117
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.58 E-value=1.1 Score=42.44 Aligned_cols=95 Identities=25% Similarity=0.338 Sum_probs=54.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccc----------cCCCCCCcc--cccc--CCCcEEE--------EecChhH
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPI----------VMGVELPKS--LFQV--DPEKVFG--------LTINPLV 305 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PL----------Vp~v~lP~e--Lf~i--~~~KI~G--------LTIdper 305 (386)
|.|.|.++||||.++-.|| ..|+..-+-=. .-++++-.. +-+. .-...++ +..+-+.
T Consensus 7 i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 86 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGEDV 86 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECCcch
Confidence 7899999999999999999 66865543222 113332221 1110 0001110 1122223
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCC
Q 016625 306 LQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPV 349 (386)
Q Consensus 306 L~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~ 349 (386)
-.+||.+... ..-|.++....++++|...++-+.+.++
T Consensus 87 ~~~lr~~~i~------~~~s~~a~~~~ir~~l~~~q~~ia~~~~ 124 (225)
T PRK00023 87 TDEIRTEEVG------NAASKVAAIPEVREALVERQRAFAREPG 124 (225)
T ss_pred HHhhChHHHH------HHHHHHcCCHHHHHHHHHHHHHHhhCCC
Confidence 3357777662 1245688888999999887776666533
No 118
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.57 E-value=9.5 Score=36.68 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=53.2
Q ss_pred ccEEEEEeCChH-HHHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++|+--+..| --|+.+.+.+...+|++ ++..++ .+ +.+.+.+++++ --+||.+.-+.+.|..+
T Consensus 65 ~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v--------~i~~~~~~i-~~~~~~~~~~~----~DlVvd~~D~~~~r~~l 131 (240)
T TIGR02355 65 QRQVLHSDANIGQPKVESAKDALTQINPHI--------AINPINAKL-DDAELAALIAE----HDIVVDCTDNVEVRNQL 131 (240)
T ss_pred ccceeeeHhhCCCcHHHHHHHHHHHHCCCc--------EEEEEeccC-CHHHHHHHhhc----CCEEEEcCCCHHHHHHH
Confidence 355655434455 44666666666677763 333333 33 34555555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.+.|.++++|+|.
T Consensus 132 n~~~~~~~ip~v~ 144 (240)
T TIGR02355 132 NRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999996
No 119
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.40 E-value=6.2 Score=42.48 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=74.2
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016625 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (386)
Q Consensus 103 VSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~ 182 (386)
|=+-+|.|=....||.|-|=|++ ...--|||.|.++-+++. .-.|-+||+||--.+....+.+.+ ++|
T Consensus 308 VN~k~gltfa~~LRa~LRqDPDv----------ImVGEIRD~ETAeiavqA-alTGHLVlSTlHtnda~~ai~RL~-~mG 375 (500)
T COG2804 308 VNPKIGLTFARALRAILRQDPDV----------IMVGEIRDLETAEIAVQA-ALTGHLVLSTLHTNDAPGAITRLL-EMG 375 (500)
T ss_pred cccccCCCHHHHHHHHhccCCCe----------EEEeccCCHHHHHHHHHH-HhcCCeEeeecccCchHHHHHHHH-HcC
Confidence 44578999999999999999973 456669999999887755 567889999999999999999876 699
Q ss_pred CCEeecchHHHHHHHHHhC
Q 016625 183 IPSTDVLGPITEAIASHLG 201 (386)
Q Consensus 183 i~~vDll~p~i~~le~~lG 201 (386)
|.-..+-.++..-+++.|=
T Consensus 376 v~~~~l~s~l~gViaQRLv 394 (500)
T COG2804 376 VEPYLLASSLLGVIAQRLV 394 (500)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999998888887764
No 120
>PRK04328 hypothetical protein; Provisional
Probab=77.35 E-value=2.5 Score=40.34 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=20.8
Q ss_pred CCCc-CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 243 NLQK-ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 243 ~L~~-ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|+.. .=++|.|.++||||-+|+.++..|.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4543 3356689999999999997764333
No 121
>PRK00889 adenylylsulfate kinase; Provisional
Probab=77.12 E-value=16 Score=32.29 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|++++|||-++-.||..
T Consensus 7 i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988843
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=77.01 E-value=9.6 Score=32.42 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|++||-+++|||-|-..|.+
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 79999999999999888874
No 123
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=76.84 E-value=3.1 Score=39.18 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|+..-. ++|.|.++||||-+++-++ +.|-|+.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~l 53 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGI 53 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 444444 5568999999999998544 3566664
No 124
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.83 E-value=5.9 Score=35.09 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCEEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 147 LMVIIKQAAKDGAMLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 147 l~~il~~a~~~~~iV~~Tl--vd-----------~elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
+..++..++..-.+++.|+ ++ .++.+.+++.|++++++++|++.++.+
T Consensus 101 ~~~ii~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vd~~~~~~~ 161 (193)
T cd01835 101 LNQLLEEAKRLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLRRDVPFLDTFTPLLN 161 (193)
T ss_pred HHHHHHHHhcCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeEeCccchhc
Confidence 4444555544445666664 22 257788999999999999999987765
No 125
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.62 E-value=9.6 Score=36.66 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=52.0
Q ss_pred cEEEEEeCChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
+++++=-+..| -=|+.+.+.+....|++ ++..++..=+.+.+.+++.+ --+||.+.-+.+.|..+.+
T Consensus 74 Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v--------~i~~~~~~i~~~~~~~~~~~----~DiVi~~~D~~~~r~~ln~ 141 (245)
T PRK05690 74 RQVLHDDATIGQPKVESARAALARINPHI--------AIETINARLDDDELAALIAG----HDLVLDCTDNVATRNQLNR 141 (245)
T ss_pred hhhcCChhhCCChHHHHHHHHHHHHCCCC--------EEEEEeccCCHHHHHHHHhc----CCEEEecCCCHHHHHHHHH
Confidence 45555334456 34566666666666753 33444332245555555543 2499999999999999999
Q ss_pred HHHHcCCCEee
Q 016625 177 ACELWGIPSTD 187 (386)
Q Consensus 177 ~~~~~~i~~vD 187 (386)
+|.++++|+|.
T Consensus 142 ~~~~~~ip~v~ 152 (245)
T PRK05690 142 ACFAAKKPLVS 152 (245)
T ss_pred HHHHhCCEEEE
Confidence 99999999997
No 126
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=76.57 E-value=6.1 Score=34.54 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCC-----C
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDE-----I 323 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~-----~ 323 (386)
|+++|.+.+|||=+--+|.+. ...++.-..+.. ...+ +.+..++.=.++ |. -.+.|......+.-.+. .
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~--~~~~~~~t~g~~-~~~~-~~~~~~~~i~D~-~G-~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE--IPKKVAPTVGFT-PTKL-RLDKYEVCIFDL-GG-GANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC--CCccccCcccce-EEEE-EECCEEEEEEEC-CC-cHHHHHHHHHHHcCCCEEEEEEE
Confidence 799999999999887777643 222322222221 1222 232222222222 11 12233332222321111 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCcc
Q 016625 324 RSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKA 358 (386)
Q Consensus 324 ~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kS 358 (386)
.+...+.+.++.++....+-.... ++|++ |-||.
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~-~~piliv~NK~ 110 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVS-GKPILVLANKQ 110 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCcccc-CCcEEEEEeCC
Confidence 334446666666665544332223 78999 87776
No 127
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=76.51 E-value=4.3 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
-|+++|-+.+|||-|...|.+..+.+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~ 27 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV 27 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 48999999999999999888655554
No 128
>PRK14531 adenylate kinase; Provisional
Probab=76.31 E-value=1.9 Score=38.87 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
-|+++|.++||||-+|--|| .+|+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 49999999999999999999 567754
No 129
>PRK13695 putative NTPase; Provisional
Probab=76.18 E-value=20 Score=31.79 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=59.7
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecccc-----C---C-----------CCCCccccccCCCcEEEEecChh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV-----M---G-----------VELPKSLFQVDPEKVFGLTINPL 304 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLV-----p---~-----------v~lP~eLf~i~~~KI~GLTIdpe 304 (386)
.|+|+|.+++|||=+.-.+++ .|++++.+-.- . + ..+....| +++.++-.-..+++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGF-PSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCC-CCCCceeeEEEehH
Confidence 378999999999999988763 37776543100 0 0 00000000 12223333345677
Q ss_pred HHHHHHHHHHhhcCCCCC------C-CCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCcc-HHHHHHHHHH
Q 016625 305 VLQSIRKARARSLGFRDE------I-RSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKA-IEETAAVVLR 368 (386)
Q Consensus 305 rL~~IR~eRl~~lGl~~~------~-~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kS-IEEtAa~Il~ 368 (386)
.+.+++..+.+..--... . .....+ .. -++..++++ +. +.|+| |+++. +.+-+..|+.
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~---~~~~l~~~~-~~-~~~~i~v~h~~~~~~~~~~i~~ 147 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKS-PK---FVKAVEEVL-DS-EKPVIATLHRRSVHPFVQEIKS 147 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HH---HHHHHHHHH-hC-CCeEEEEECchhhHHHHHHHhc
Confidence 888888877754311100 1 111222 12 234455556 44 67899 88874 3444555543
No 130
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=76.02 E-value=5.8 Score=33.54 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
..|+++|.+++|||=+...|.+.-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 569999999999999998887543
No 131
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=75.89 E-value=2.2 Score=41.71 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=31.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccCCCCCCccccccCCCcEEEEe
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLT 300 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLT 300 (386)
=+|++|.|+||||=+.++|- +.+.+-+++=|+-+..-+.----+.++-+++++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~ 68 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVF 68 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccc
Confidence 48999999999999999998 444333555444322222111122345556655
No 132
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.87 E-value=11 Score=34.98 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=45.2
Q ss_pred hHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 016625 107 TGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIP 184 (386)
Q Consensus 107 TGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~ 184 (386)
.|.. |+.+++.+..-+|+ +++..++ .+ +.+.+.+.+++ --+||.+.-+.+.|..+.+.|.++++|
T Consensus 72 iG~~Ka~~~~~~l~~~np~--------v~i~~~~~~i-~~~~~~~~~~~----~D~Vi~~~d~~~~r~~l~~~~~~~~ip 138 (202)
T TIGR02356 72 VGRPKVEVAAQRLRELNSD--------IQVTALKERV-TAENLELLINN----VDLVLDCTDNFATRYLINDACVALGTP 138 (202)
T ss_pred CCChHHHHHHHHHHHhCCC--------CEEEEehhcC-CHHHHHHHHhC----CCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 4533 44444444444454 3334343 23 34445554433 248999999999999999999999999
Q ss_pred Eeecc
Q 016625 185 STDVL 189 (386)
Q Consensus 185 ~vDll 189 (386)
+++.-
T Consensus 139 ~i~~~ 143 (202)
T TIGR02356 139 LISAA 143 (202)
T ss_pred EEEEE
Confidence 99953
No 133
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=75.35 E-value=1.9 Score=38.95 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|.|+|.|+||||-++-+|+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999954
No 134
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=75.33 E-value=14 Score=30.24 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 149 VIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 149 ~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
++++.+++.. -+|+..=+++.+++.+...|++++||++.+. ....|....|.+.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~a~G~~~ 73 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGKACGIEV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHHHHCCCc
Confidence 3344444433 3777888899999999999999999999987 4588888888765
No 135
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=75.21 E-value=2 Score=36.03 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+++|+++||||=++-.|+ ..|+.+-+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~ 30 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQ 30 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeH
Confidence 7899999999999999999 677544443
No 136
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.19 E-value=2 Score=37.88 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
++++|..++|||.++.=|| +.|.||+=+-
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999977666 4588886544
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=74.92 E-value=6.1 Score=33.34 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=17.9
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|+++|.+++|||=+...+.+
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 489999999999998776654
No 138
>PRK08118 topology modulation protein; Reviewed
Probab=74.62 E-value=2.1 Score=38.54 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
|+++|.++||||=++--|+ ..|+.+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 8999999999999999999 456553
No 139
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=74.61 E-value=12 Score=33.27 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=38.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVV 366 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~I 366 (386)
.|+.+|-|+++|+...+ |..+. +.. ......+.+..++=-+...++++..++|-+|-+++++||+...|
T Consensus 118 ~PDl~~~Ldv~pe~~~~-R~~~r---~~~--~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALK-RIAKR---GEK--DDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHH-HHHHT---SST--TTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHH-HHHcC---Ccc--chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 56889999999987666 33332 210 11222333333333334455565223675667788899998877
No 140
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=74.30 E-value=6.6 Score=33.56 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
-|+++|.+++|||-+-..|.+..+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~ 29 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE 29 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 48999999999999998888654444
No 141
>PRK01184 hypothetical protein; Provisional
Probab=74.11 E-value=2.1 Score=38.09 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|+|+|.++||||=++-.+.++|+.+..
T Consensus 4 i~l~G~~GsGKsT~a~~~~~~g~~~i~ 30 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIAREMGIPVVV 30 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCcEEE
Confidence 789999999999999865588886654
No 142
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=73.84 E-value=1.9 Score=37.52 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|.|++|||-+.-.|++.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999954
No 143
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=73.61 E-value=2.5 Score=38.76 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
|.|.|.++||||=.|-||+++|+.+-
T Consensus 5 i~ltG~~gsGKst~~~~l~~~g~~~i 30 (194)
T PRK00081 5 IGLTGGIGSGKSTVANLFAELGAPVI 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEE
Confidence 78999999999999999999998774
No 144
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=73.54 E-value=2.6 Score=38.33 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
|++.|.|++|||=+++.|..+|++
T Consensus 17 vLi~G~sG~GKStlal~L~~~g~~ 40 (149)
T cd01918 17 VLITGPSGIGKSELALELIKRGHR 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCe
Confidence 899999999999999999999844
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.45 E-value=2.1 Score=33.74 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|+|.++||||=+..-||+.
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999944
No 146
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=73.29 E-value=2.7 Score=32.43 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KVA 274 (386)
|++.|.+++|||=++-.|+++ |+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~ 29 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVV 29 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence 678999999999999999976 55544
No 147
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=73.23 E-value=15 Score=34.20 Aligned_cols=81 Identities=7% Similarity=0.115 Sum_probs=50.7
Q ss_pred cEEEEEe--CChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 98 KSIYMVS--DGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 98 ~~IfiVS--DsTGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
++.|+-. |..|.. |+.+.+.+....|++ +++.......+..+...+.+.+ --+|+.+.-+.+.+..+
T Consensus 61 rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v------~i~~~~~~~~~~~~~~~~~~~~----~dvVi~~~d~~~~~~~l 130 (198)
T cd01485 61 SNFFLDAEVSNSGMNRAAASYEFLQELNPNV------KLSIVEEDSLSNDSNIEEYLQK----FTLVIATEENYERTAKV 130 (198)
T ss_pred ccEecccchhhcCchHHHHHHHHHHHHCCCC------EEEEEecccccchhhHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 4445443 556644 555566666666763 3433322222224444444433 24888998899999999
Q ss_pred HHHHHHcCCCEeec
Q 016625 175 KKACELWGIPSTDV 188 (386)
Q Consensus 175 ~~~~~~~~i~~vDl 188 (386)
.+.|+++++|++..
T Consensus 131 n~~c~~~~ip~i~~ 144 (198)
T cd01485 131 NDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999874
No 148
>PRK08939 primosomal protein DnaI; Reviewed
Probab=72.82 E-value=3.3 Score=41.29 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.8
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceee--ecc
Q 016625 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVA--NVP 277 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVA--N~P 277 (386)
.|.+|+-++..|... --++|.|.++||||=|+.-|| ++|++|. ++|
T Consensus 142 ~~~~fi~~~~~~~~~-----~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 142 AALDFLEAYPPGEKV-----KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred HHHHHHHHhhccCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 356677666654332 248999999999999988887 4688887 555
No 149
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=72.27 E-value=22 Score=32.29 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=67.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~ 173 (386)
.++..||++ -++=++++.+++.+..+||++ ++.-...++.+. +...++++.+.+.+ -+|+-.+=.|.=-..
T Consensus 44 ~~~~~v~ll-G~~~~~~~~~~~~l~~~yp~l------~i~g~~~g~~~~-~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 115 (171)
T cd06533 44 QKGLRVFLL-GAKPEVLEKAAERLRARYPGL------KIVGYHHGYFGP-EEEEEIIERINASGADILFVGLGAPKQELW 115 (171)
T ss_pred HcCCeEEEE-CCCHHHHHHHHHHHHHHCCCc------EEEEecCCCCCh-hhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 446899999 444556677777889999984 343334566654 33444888887666 499999988876667
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 174 l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+.+.....+.+++=-+|-.++.++......|
T Consensus 116 ~~~~~~~l~~~v~~~vG~~~d~~aG~~~raP 146 (171)
T cd06533 116 IARHKDRLPVPVAIGVGGSFDFLAGTVKRAP 146 (171)
T ss_pred HHHHHHHCCCCEEEEeceeeEeccCCcccCc
Confidence 7766666656655556776666665544444
No 150
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.11 E-value=2.5 Score=39.40 Aligned_cols=29 Identities=45% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
|+|||++++|||=|..=|| .+|.||+-+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 7899999999999877666 3466666554
No 151
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=71.99 E-value=2.8 Score=37.94 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
|.++|-|+||||-+.--|+ .+|+||+-+=
T Consensus 4 i~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6789999999999988777 4589887654
No 152
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.99 E-value=5.3 Score=32.86 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhH-HHHHHHHHHhhcCCCCCCCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLV-LQSIRKARARSLGFRDEIRSNY 327 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdper-L~~IR~eRl~~lGl~~~~~S~Y 327 (386)
++|.|.+++|||=+.-++++.-...+...- +..++.++..... ...+.++-+..+|... ...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~ 69 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQLNAEAEIKN--------------HPDVIYVNCPSSRTPRDFAQEILEALGLPL---KSR 69 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SST
T ss_pred cEEEcCCCCCHHHHHHHHHHHhHHhhhccC--------------CCcEEEEEeCCCCCHHHHHHHHHHHhCccc---ccc
Confidence 789999999999999999954111111100 4456677777666 7788888899999853 224
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCcEE-c---cCc-cHHHHHHHHHHHHh
Q 016625 328 SEMDYVREELEFAGRIFAQNPVWPVI-V---TGK-AIEETAAVVLRLYH 371 (386)
Q Consensus 328 As~e~I~~EL~~A~~lf~k~~~~pvI-V---T~k-SIEEtAa~Il~~~~ 371 (386)
.+.+.+.+. ..+.++++ +..+| + -+. + .+....|..+++
T Consensus 70 ~~~~~l~~~---~~~~l~~~-~~~~lviDe~~~l~~-~~~l~~l~~l~~ 113 (131)
T PF13401_consen 70 QTSDELRSL---LIDALDRR-RVVLLVIDEADHLFS-DEFLEFLRSLLN 113 (131)
T ss_dssp S-HHHHHHH---HHHHHHHC-TEEEEEEETTHHHHT-HHHHHHHHHHTC
T ss_pred CCHHHHHHH---HHHHHHhc-CCeEEEEeChHhcCC-HHHHHHHHHHHh
Confidence 555555533 33445554 33333 3 232 2 455555544444
No 153
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=71.98 E-value=7 Score=36.49 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|.+++|||-++..+++
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999884
No 154
>PTZ00088 adenylate kinase 1; Provisional
Probab=71.96 E-value=2.8 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
|||+|.+++|||=++-+||+ +|+.+-
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 99999999999999999994 577554
No 155
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=71.69 E-value=2.3 Score=38.34 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|+|++|||=+.-.||..
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999954
No 156
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=71.68 E-value=2.9 Score=37.67 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~ 276 (386)
|.|.|.++||||=++-+|+++|+.|-+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKELGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEec
Confidence 6899999999999999999988877553
No 157
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=71.08 E-value=8.3 Score=32.67 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
-|+++|.+++|||=+.-.|.+..+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~ 27 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE 27 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 48999999999999988887654443
No 158
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=71.06 E-value=7.4 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.||+||-+++|||=+-..+.+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~ 23 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDD 23 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999888754
No 159
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=71.00 E-value=2.8 Score=38.90 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
+.++|.|+||||-|.--|. .+|+||+=|=
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 6899999999999754444 6699998663
No 160
>PRK06547 hypothetical protein; Provisional
Probab=70.97 E-value=2.8 Score=38.28 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEE-ccCCCCCChhhHHhhhc
Q 016625 249 IILS-GVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLv-GVSRTsKTPlSiYLA~~ 269 (386)
+|+| |.|+||||=++=.||+.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5555 99999999999999954
No 161
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.90 E-value=7.3 Score=34.18 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCC---CEEEEEcC-----------C----HHHHHHHHHHHHHcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAKDG---AMLVYTLA-----------D----PSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~~~---~iV~~Tlv-----------d----~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
+.+.++|+.+++.+ .||+.|.. + .++.+.+++.|+++|++++|+..++
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~ 158 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLIDLHTPL 158 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEEEccccc
Confidence 45566666654322 36666653 1 3578889999999999999998765
No 162
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=70.89 E-value=2.9 Score=35.67 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=24.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
|||+|||-+.+|||=+--.|.+.-..|.+.|.
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~ 32 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPF 32 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCc
Confidence 89999999999999998888743234555553
No 163
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=70.86 E-value=3.3 Score=35.50 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVA 274 (386)
|++.|-+++|||.++..||+ +|++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 78999999999999987774 355554
No 164
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=70.35 E-value=3.1 Score=41.78 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
|+|+|+..||||-||+-||+++
T Consensus 7 i~I~GpTasGKS~LAl~LA~~~ 28 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKGK 28 (300)
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8999999999999999999763
No 165
>PRK07714 hypothetical protein; Provisional
Probab=70.17 E-value=23 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=36.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+.++.++.+...|...+||++.++ .-..|...+|.++
T Consensus 38 ViiA~D~s~~~~~ki~~~~~~~~vp~~~~~--sk~eLG~a~Gk~~ 80 (100)
T PRK07714 38 VLLSEDASVNTTKKITDKCTYYNVPMRKVE--NRQQLGHAIGKDE 80 (100)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCEEEeC--CHHHHHHHhCCCc
Confidence 666777889999999999999999999874 4588999999876
No 166
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=69.83 E-value=35 Score=32.22 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.0
Q ss_pred EEEEccCCCCCCh------hhHHhhhcCc
Q 016625 249 IILSGVSRTGKTP------LSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTP------lSiYLA~~G~ 271 (386)
++|.|++.+|||= +..||||-|.
T Consensus 33 ~~l~G~n~~GKstll~~i~~~~~la~~g~ 61 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVIVLMAQIGC 61 (222)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhCC
Confidence 6999999999998 3578999994
No 167
>PRK08181 transposase; Validated
Probab=69.74 E-value=3.5 Score=40.56 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=36.9
Q ss_pred CCCcHHHHhhhhhh-hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 216 FPLSEEYFRRIEAI-EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 216 ~~ld~~YF~RIeAI-EFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
+.++.......... +|. +.| --++|+|.++||||=|+.-+| ++|++|.-++.
T Consensus 86 ~~~~~~~~~~L~~~~~~~---~~~--------~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWL---AKG--------ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CCCCHHHHHHHHHHHHHH---hcC--------ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 34566666666666 463 111 139999999999999999887 47998876664
No 168
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=69.71 E-value=52 Score=31.08 Aligned_cols=108 Identities=25% Similarity=0.376 Sum_probs=76.3
Q ss_pred CcEEEEccCCCCCChhhHHhh-hcCceeeec-------------------cccCC-----------------------CC
Q 016625 247 ADIILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------PIVMG-----------------------VE 283 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~-------------------PLVp~-----------------------v~ 283 (386)
-.|++-|-.+||||-||=.|| -.|++--|+ |++.+ -=
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHgCd~ 87 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHGCDF 87 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEeecccCc
Confidence 469999999999999999999 679888776 33321 12
Q ss_pred CCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-----HHHHHHHHhhCCCCcEE-ccCc
Q 016625 284 LPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-----LEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 284 lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~E-----L~~A~~lf~k~~~~pvI-VT~k 357 (386)
.|+.+|+ .||=|+.+-..|-. ||++-|.+. ..- .+.++-| ++.|++-|... +|. ....
T Consensus 88 Fperwfd----lVvVLr~~~s~LY~----RL~sRgY~e---~Ki--~eNiecEIfgv~~eea~eSy~~~---iV~eL~s~ 151 (176)
T KOG3347|consen 88 FPERWFD----LVVVLRTPNSVLYD----RLKSRGYSE---KKI--KENIECEIFGVVLEEARESYSPK---IVVELQSE 151 (176)
T ss_pred cchhhee----EEEEEecCchHHHH----HHHHcCCCH---HHH--hhhcchHHHHHHHHHHHHHcCCc---ceeecCcC
Confidence 5777774 59999999999975 776666421 111 1122223 46788889875 688 8888
Q ss_pred cHHHHHHHHHHHH
Q 016625 358 AIEETAAVVLRLY 370 (386)
Q Consensus 358 SIEEtAa~Il~~~ 370 (386)
+.||.-+.|=+++
T Consensus 152 ~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 152 TKEEMESNISRIL 164 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 8898877765544
No 169
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=69.33 E-value=12 Score=32.66 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcCC---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016625 144 VEQLMVIIKQAAKDG-AMLVYTLAD---------------PSMAESAKKACELWGIPSTDVLGPIT 193 (386)
Q Consensus 144 ~e~l~~il~~a~~~~-~iV~~Tlvd---------------~elr~~l~~~~~~~~i~~vDll~p~i 193 (386)
.+.+..+|+++...+ .+|+.|+.+ .++.+.+++.|++.|++++|+..++.
T Consensus 91 ~~~~~~~i~~i~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd~~~~~~ 156 (185)
T cd01832 91 RADLEEAVRRLRAAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAVHVDLWEHPE 156 (185)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCEEEecccCcc
Confidence 455666677775444 466666643 23677889999999999999987754
No 170
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=69.19 E-value=3.9 Score=38.59 Aligned_cols=118 Identities=20% Similarity=0.144 Sum_probs=68.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee-------------ccccC------------------------------CCCC
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN-------------VPIVM------------------------------GVEL 284 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN-------------~PLVp------------------------------~v~l 284 (386)
|.+=|.++||||-.|-=|| +.||+.-| ++|.. +..|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVlegrL 82 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEGRL 82 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEhhhh
Confidence 6788999999999999999 88999987 33332 2333
Q ss_pred CccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH--HHHHHHHHHHHHHHhhCCCC---------cEE
Q 016625 285 PKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM--DYVREELEFAGRIFAQNPVW---------PVI 353 (386)
Q Consensus 285 P~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~--e~I~~EL~~A~~lf~k~~~~---------pvI 353 (386)
-..++......-+=|.... ++|-+|...- .+-.|.+. +-...|-...++. +++-|+ -||
T Consensus 83 A~Wi~k~~adlkI~L~Apl----~vRa~Ria~R-----Egi~~~~a~~~~~~RE~se~kRY-~~~YgIDidDlSiyDLVi 152 (179)
T COG1102 83 AGWIVREYADLKIWLKAPL----EVRAERIAKR-----EGIDVDEALAETVEREESEKKRY-KKIYGIDIDDLSIYDLVI 152 (179)
T ss_pred HHHHhccccceEEEEeCcH----HHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHhCCCCccceeeEEEE
Confidence 3344433333333344333 3455555211 12223322 2233333333333 333244 378
Q ss_pred -ccCccHHHHHHHHHHHHhccccc
Q 016625 354 -VTGKAIEETAAVVLRLYHDRKHK 376 (386)
Q Consensus 354 -VT~kSIEEtAa~Il~~~~~r~~~ 376 (386)
+++-++|++...|...+.....+
T Consensus 153 nTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 153 NTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred ecccCCHHHHHHHHHHHHHhhccc
Confidence 99999999999998888765544
No 171
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=69.01 E-value=8.7 Score=32.02 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|+++|-+++|||=+.-.|.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999998887743
No 172
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=68.61 E-value=8.6 Score=32.37 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
-|++||-+.+|||=|...|.+..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~ 26 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF 26 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 489999999999988887775433
No 173
>PRK06683 hypothetical protein; Provisional
Probab=68.57 E-value=24 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 151 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 151 l~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
++.++... -+++-.=+++.+++.+...|+..+||++.+. ....|....|.+
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~--t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE--SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCc
Confidence 44444333 3677888899999999999999999999986 668888888865
No 174
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=68.48 E-value=16 Score=34.01 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
++.|+=.+..|. =|+.+++.+....|++ +++.+.. .+. +...+.+++ --+|+.+..+.+.+..+.+
T Consensus 63 rqfl~~~~diG~~Ka~a~~~~L~~lNp~v------~i~~~~~-~~~--~~~~~~~~~----~dvVi~~~~~~~~~~~ln~ 129 (197)
T cd01492 63 AQFLIPAEDLGQNRAEASLERLRALNPRV------KVSVDTD-DIS--EKPEEFFSQ----FDVVVATELSRAELVKINE 129 (197)
T ss_pred CCccccHHHcCchHHHHHHHHHHHHCCCC------EEEEEec-Ccc--ccHHHHHhC----CCEEEECCCCHHHHHHHHH
Confidence 444554555565 3666677777777864 3444433 222 222333332 2488888889999999999
Q ss_pred HHHHcCCCEee
Q 016625 177 ACELWGIPSTD 187 (386)
Q Consensus 177 ~~~~~~i~~vD 187 (386)
.|.++|+|++.
T Consensus 130 ~c~~~~ip~i~ 140 (197)
T cd01492 130 LCRKLGVKFYA 140 (197)
T ss_pred HHHHcCCCEEE
Confidence 99999999875
No 175
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=68.31 E-value=3.4 Score=38.10 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|.|++|||=+|=.||++
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999977
No 176
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=68.20 E-value=25 Score=36.53 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=56.2
Q ss_pred cEEEEE-eCCh-HHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHH
Q 016625 98 KSIYMV-SDGT-GWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAESA 174 (386)
Q Consensus 98 ~~IfiV-SDsT-GeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~l 174 (386)
+.+|+| ||-. +.++..+.|..+.+-.+- -+..+.+|+ ...++..||+++++.+ -+||.||+=+....+.
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~Gge------vvgE~Y~pl--g~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~ 206 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGE------VVGERYLPL--GATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFY 206 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-E------EEEEEEE-S---HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHH
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCE------EEEEEEecC--CchhHHHHHHHHHhhCCCEEEEeCcCCcHHHHH
Confidence 677777 8876 899999999999999652 256667787 3488999999986544 6999999998888888
Q ss_pred HHHHHH
Q 016625 175 KKACEL 180 (386)
Q Consensus 175 ~~~~~~ 180 (386)
+++.+.
T Consensus 207 r~~~~a 212 (363)
T PF13433_consen 207 RAYAAA 212 (363)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877653
No 177
>PLN03108 Rab family protein; Provisional
Probab=68.15 E-value=11 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
-|+|||.+++|||=+...|++..+
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~ 31 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 399999999999999988885433
No 178
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=68.06 E-value=18 Score=31.50 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 169 SMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 169 elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
.+++.+++.|+++|++++|+...+..
T Consensus 143 ~~~~~~~~~a~~~~~~~iD~~~~~~~ 168 (199)
T cd01838 143 QYAEACVEVAEELGVPVIDLWTAMQE 168 (199)
T ss_pred HHHHHHHHHHHHhCCcEEEHHHHHHh
Confidence 45567888999999999999876654
No 179
>PLN00223 ADP-ribosylation factor; Provisional
Probab=67.65 E-value=25 Score=31.48 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.4
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|+++|-+.+|||-+--.|.+
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~ 39 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKL 39 (181)
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 499999999999999777764
No 180
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=67.49 E-value=18 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-|+|+|.+++|||-+--+|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 466999999999999999988754
No 181
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=67.48 E-value=3.8 Score=42.98 Aligned_cols=27 Identities=41% Similarity=0.565 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
++|.|+++||||=++-.||+. +++|++
T Consensus 91 iLL~GppGtGKT~la~alA~~----~~~~~~ 117 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGE----AGVPFF 117 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHH----cCCCee
Confidence 899999999999999999953 345554
No 182
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=67.29 E-value=7.9 Score=32.82 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|.+++|||=+.--|.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999988777643
No 183
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=67.16 E-value=14 Score=33.39 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
-||+||-+.+|||-|...+...-+
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f 30 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCF 30 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 499999999999999988885433
No 184
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=67.12 E-value=6 Score=37.46 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=32.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 288 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eL 288 (386)
|-|+|+|-+.+|||-|--.|.+..-+++|+|..--.+.|..+
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~ 42 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVL 42 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEE
Confidence 568999999999999988888665789999876533334433
No 185
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=67.11 E-value=3.9 Score=42.87 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=35.3
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeecccc
Q 016625 230 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV 279 (386)
Q Consensus 230 EFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLV 279 (386)
+++..+|- ++...-...=+.|||..-||||=|+.|||| +|+||+=+=+=
T Consensus 58 ~i~~~~~~-~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 58 EIADTWES-KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred HHhhcccc-cchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 34444444 344444556699999999999999999995 58998865443
No 186
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=67.08 E-value=29 Score=33.43 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=82.4
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~ 175 (386)
.+++|...+..|. =++.+.+.+..-+|++ +++.+. -+++ .+.+.+++. .+--+|+.++-+.+.+..|.
T Consensus 52 nRq~~~~~~diG~~Kae~~~~~l~~inP~~------~V~~~~-~~i~-~~~~~~l~~---~~~D~VvdaiD~~~~k~~L~ 120 (231)
T cd00755 52 NRQIHALLSTVGKPKVEVMAERIRDINPEC------EVDAVE-EFLT-PDNSEDLLG---GDPDFVVDAIDSIRAKVALI 120 (231)
T ss_pred cchhCcChhhCCCcHHHHHHHHHHHHCCCc------EEEEee-eecC-HhHHHHHhc---CCCCEEEEcCCCHHHHHHHH
Confidence 3556655555664 5677777777777864 333222 2343 444555442 22359999999999999999
Q ss_pred HHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccC
Q 016625 176 KACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVS 255 (386)
Q Consensus 176 ~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVS 255 (386)
++|.++++|+|..+| .| -+ .+|..+.-+| +|
T Consensus 121 ~~c~~~~ip~I~s~g---------------------~g--~~---------------------~dp~~i~i~d-----i~ 151 (231)
T cd00755 121 AYCRKRKIPVISSMG---------------------AG--GK---------------------LDPTRIRVAD-----IS 151 (231)
T ss_pred HHHHHhCCCEEEEeC---------------------Cc--CC---------------------CCCCeEEEcc-----Ee
Confidence 999999999999876 11 11 1244455555 47
Q ss_pred CCCCChhhHHhh----hcCceeeeccccCCCCCC
Q 016625 256 RTGKTPLSIYLA----QKGYKVANVPIVMGVELP 285 (386)
Q Consensus 256 RTsKTPlSiYLA----~~G~KVAN~PLVp~v~lP 285 (386)
.|..=||+-++- .+|++ -++|.|-..+.|
T Consensus 152 ~t~~~pla~~~R~~Lrk~~~~-~~~~~v~S~E~~ 184 (231)
T cd00755 152 KTSGDPLARKVRKRLRKRGIF-FGVPVVYSTEPP 184 (231)
T ss_pred ccccCcHHHHHHHHHHHcCCC-CCeEEEeCCCCC
Confidence 888889988876 34554 357777644433
No 187
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=67.06 E-value=3.6 Score=37.37 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK----GYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~----G~KVAN~P 277 (386)
|.+.|.|+||||=+|=-|+.. |.+++-+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 578999999999999998844 67776554
No 188
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=66.97 E-value=2.7 Score=39.16 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=26.5
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 242 QNLQKADI-ILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
.|+.+=-+ ++.|.++||||.++..++. .|.||.-+-+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 35554444 4559999999999999863 4777765554
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=66.84 E-value=4.1 Score=39.14 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.0
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceee
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
-.|+|.|.++||||=+..+||+ .|+++-
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4689999999999999999994 455443
No 190
>PLN03110 Rab GTPase; Provisional
Probab=66.58 E-value=11 Score=34.74 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
-|++||-+.+|||-|--.|.+..+.
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~ 38 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFC 38 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999988777655443
No 191
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=66.53 E-value=21 Score=36.26 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=50.1
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
+++++-.|..|. -|+.+++.+..-+|++ ++..++..-+.+.+.+++++ --+||.+.-+.+.|..+.+
T Consensus 177 Rq~l~~~~diG~~Ka~~~~~~l~~~np~v--------~v~~~~~~~~~~~~~~~~~~----~D~Vv~~~d~~~~r~~ln~ 244 (376)
T PRK08762 177 RQILHTEDRVGQPKVDSAAQRLAALNPDV--------QVEAVQERVTSDNVEALLQD----VDVVVDGADNFPTRYLLND 244 (376)
T ss_pred cccccchhhCCCcHHHHHHHHHHHHCCCC--------EEEEEeccCChHHHHHHHhC----CCEEEECCCCHHHHHHHHH
Confidence 445544444553 3555555555555642 33333322234445555533 2499999999999999999
Q ss_pred HHHHcCCCEeec
Q 016625 177 ACELWGIPSTDV 188 (386)
Q Consensus 177 ~~~~~~i~~vDl 188 (386)
.|.++++|+|..
T Consensus 245 ~~~~~~ip~i~~ 256 (376)
T PRK08762 245 ACVKLGKPLVYG 256 (376)
T ss_pred HHHHcCCCEEEE
Confidence 999999999875
No 192
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=66.50 E-value=7.5 Score=35.22 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=25.7
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee----eeccccC
Q 016625 249 IILSGVSRTGKTPL------SIYLAQKGYKV----ANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPl------SiYLA~~G~KV----AN~PLVp 280 (386)
++|.|+..+|||=+ ..+|||.|.-| +++|++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d 43 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD 43 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc
Confidence 68999999999976 88999999644 5666554
No 193
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.28 E-value=74 Score=32.02 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=84.9
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HHH
Q 016625 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PSM 170 (386)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~el 170 (386)
..+.++.|.|.-. +...++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+-
T Consensus 34 P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~ 107 (285)
T PRK10792 34 PGLAVVLVGSDPA--SQVYVASKRKACEEV----GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDN 107 (285)
T ss_pred ceEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence 4577888877664 555666666555543 36788889998889999999999886553 56665 4321 111
Q ss_pred HHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016625 171 AESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (386)
Q Consensus 171 r~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADI 249 (386)
.+.+..-.-+++| |=|.|. +..|. .|.+. -.|- .| .|+=-.++|- | -+|...++
T Consensus 108 ~~i~~~I~p~KDV---DGl~~~n~g~l~--~~~~~-~~Pc-Tp--------------~av~~ll~~~-~---i~l~Gk~v 162 (285)
T PRK10792 108 VKVLERIHPDKDV---DGFHPYNVGRLA--QRIPL-LRPC-TP--------------RGIMTLLERY-G---IDTYGLNA 162 (285)
T ss_pred HHHHhccCccccc---CccChhhHhHHh--CCCCC-CCCC-CH--------------HHHHHHHHHc-C---CCCCCCEE
Confidence 2333333333333 545543 22221 23110 0000 12 2222222221 1 26778899
Q ss_pred EEEccCCCCCChhhHHhhhcCcee
Q 016625 250 ILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 250 VLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
++||=|++-=-|++++|.++|.-|
T Consensus 163 vViGrs~iVG~Pla~lL~~~~atV 186 (285)
T PRK10792 163 VVVGASNIVGRPMSLELLLAGCTV 186 (285)
T ss_pred EEECCCcccHHHHHHHHHHCCCeE
Confidence 999999955569999999888544
No 194
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=65.51 E-value=17 Score=34.45 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=52.8
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEec----ChhHHHHHHHHHHhhcCCCCC-
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTI----NPLVLQSIRKARARSLGFRDE- 322 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTI----dperL~~IR~eRl~~lGl~~~- 322 (386)
-||+||-+.+|||=|...|++..+.-.-.|-+. ...... ++++... +=|.| ..+....+|..-.+ +. +.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~-~~~~~~-~~~~~~~-v~L~iwDt~G~e~~~~l~~~~~~--~~-d~i 76 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVF-ENYTAS-FEIDKRR-IELNMWDTSGSSYYDNVRPLAYP--DS-DAV 76 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccc-cceEEE-EEECCEE-EEEEEEeCCCcHHHHHHhHHhcc--CC-CEE
Confidence 389999999999999999886544322233332 122222 2444332 33322 23445555443221 11 00
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCcc
Q 016625 323 ----IRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKA 358 (386)
Q Consensus 323 ----~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kS 358 (386)
.-+...+.+.+...+. ..+....+++|+| |-+|.
T Consensus 77 llvfdis~~~Sf~~i~~~w~--~~~~~~~~~~piiLVgnK~ 115 (222)
T cd04173 77 LICFDISRPETLDSVLKKWQ--GETQEFCPNAKVVLVGCKL 115 (222)
T ss_pred EEEEECCCHHHHHHHHHHHH--HHHHhhCCCCCEEEEEECc
Confidence 2234455666654432 3333333578999 87764
No 195
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.35 E-value=4.4 Score=39.63 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=18.6
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|+|+|++++|||=|+.-||.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988883
No 196
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=65.30 E-value=3.6 Score=37.42 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+|.|.++||||-+..+++++
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999954
No 197
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=65.25 E-value=12 Score=33.55 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
-||+||-+++|||=|...+.+..+.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~ 27 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP 27 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 4899999999999999888865443
No 198
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=65.13 E-value=37 Score=34.73 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016625 243 NLQKADII-LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSiYLA 267 (386)
|+..--|+ |.|.++||||=+|+-||
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHH
Confidence 45555555 89999999999999997
No 199
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=65.10 E-value=3.8 Score=40.12 Aligned_cols=65 Identities=28% Similarity=0.385 Sum_probs=36.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec---------cccCCCCCCccccccCCCcEE--------EEecChhHHHHHH
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV---------PIVMGVELPKSLFQVDPEKVF--------GLTINPLVLQSIR 310 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~---------PLVp~v~lP~eLf~i~~~KI~--------GLTIdperL~~IR 310 (386)
++|+|++.||||=+++=|| +.|.-|-+. ...-+-|.|.+|..+.+ ++ |- |+++..++-=
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~R--iyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRR--IYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EE--EES----GGG-S---HHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccce--eeeccccccCCC-cCHHHHHHHH
Confidence 5899999999999999999 457766553 22236788888865533 32 32 6666665544
Q ss_pred HHHHhh
Q 016625 311 KARARS 316 (386)
Q Consensus 311 ~eRl~~ 316 (386)
-.++..
T Consensus 81 i~~v~~ 86 (233)
T PF01745_consen 81 ISEVNS 86 (233)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444433
No 200
>PRK10867 signal recognition particle protein; Provisional
Probab=65.08 E-value=4.4 Score=42.64 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=25.3
Q ss_pred CcEEEEccCCCCCChhhHHhh----hc-Cceeeeccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QK-GYKVANVPI 278 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~-G~KVAN~PL 278 (386)
.=|+++|+.++|||=++..|| .+ |+||+-+-.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 458999999999999777766 35 888876644
No 201
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=65.07 E-value=10 Score=35.62 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhh------HHhhhcCceee----eccccC
Q 016625 249 IILSGVSRTGKTPLS------IYLAQKGYKVA----NVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlS------iYLA~~G~KVA----N~PLVp 280 (386)
++|+|++.+|||=+- .||||-|..+. ++|++.
T Consensus 33 ~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~ 74 (216)
T cd03284 33 LLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVD 74 (216)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceeccee
Confidence 699999999999743 46778887653 666664
No 202
>PRK14526 adenylate kinase; Provisional
Probab=64.99 E-value=4.1 Score=38.41 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~K 272 (386)
|+|+|.++||||-+|-.|| .+|+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8999999999999999999 56764
No 203
>PRK06851 hypothetical protein; Provisional
Probab=64.90 E-value=18 Score=37.50 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=70.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC-----------------CCCCCccccccCC---CcEE--EEe
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM-----------------GVELPKSLFQVDP---EKVF--GLT 300 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~--PLVp-----------------~v~lP~eLf~i~~---~KI~--GLT 300 (386)
+||-|.++||||-|.-=|+ .+||.|-=+ |+-| +. -|-.++...+ ..++ |-.
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~l~~aivDgt-aph~~~P~~pgav~eiinL~~~ 111 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGT-APHVVDPKAPGAVEEIINLGDA 111 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecCCCEEEEcCC-CcCcCCCCCCCcceEEEEHHHH
Confidence 8999999999999887644 568886643 3333 22 2222322122 2455 445
Q ss_pred cChhHHHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHHhhCCCCcEE--ccCccHHHHHHHHHHHHhc
Q 016625 301 INPLVLQSIRKARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVI--VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 301 IdperL~~IR~eRl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~~~pvI--VT~kSIEEtAa~Il~~~~~ 372 (386)
.|.+.|..-|++ ...+. ..| .-.++..+.|..|.++..++ ..-.+ +...-+.|.+..+++.+-.
T Consensus 112 ~d~~~l~~~k~e-I~~~~------~~~~~~~~~Ay~~l~~A~~ihdd~-e~~y~~~md~~k~~~~~~~l~~~l~~ 178 (367)
T PRK06851 112 WDEDKLRKHKEE-ILKIN------EEISRCFQRAYEYLNEALAIHDEW-EKIYIENMDFAKANELTDELIQELFK 178 (367)
T ss_pred hChHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 788888776643 22221 112 23467888899999988876 55555 5555666666666665543
No 204
>PRK00023 cmk cytidylate kinase; Provisional
Probab=64.87 E-value=28 Score=32.95 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=41.2
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH---HHHH--h---hCCCCcEE-ccCccHHHHHHH
Q 016625 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA---GRIF--A---QNPVWPVI-VTGKAIEETAAV 365 (386)
Q Consensus 295 KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A---~~lf--~---k~~~~pvI-VT~kSIEEtAa~ 365 (386)
+|| |+.+++.-.+.|.+++...|. + .+.+.+++++..= +.-+ . ...+.-+| +|..++||++..
T Consensus 143 ~if-l~a~~e~R~~Rr~~~~~~~g~----~---~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~ 214 (225)
T PRK00023 143 KIF-LTASAEERAERRYKELQAKGI----S---VDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEK 214 (225)
T ss_pred EEE-EECCHHHHHHHHHHHHHhcCC----C---CCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHH
Confidence 444 999988655555555544332 1 3344454444332 2221 1 11112467 999999999999
Q ss_pred HHHHHhcc
Q 016625 366 VLRLYHDR 373 (386)
Q Consensus 366 Il~~~~~r 373 (386)
|++++..+
T Consensus 215 I~~~i~~~ 222 (225)
T PRK00023 215 ILALVEEK 222 (225)
T ss_pred HHHHHHHH
Confidence 99999653
No 205
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=64.76 E-value=5.2 Score=34.26 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|.|.+++|||=++-.|++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999999964
No 206
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=64.47 E-value=34 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 150 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 150 il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+++.++... -+|+..=+++++++.+...|+..+||++..+ ....|...+|.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~--t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID--TMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC--CHHHHHHHHCCc
Confidence 344444433 3666788889999999999999999997554 568899999987
No 207
>PRK09183 transposase/IS protein; Provisional
Probab=64.40 E-value=4.8 Score=38.97 Aligned_cols=48 Identities=31% Similarity=0.520 Sum_probs=33.6
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 218 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
++..-...+..++| +.. | --++|+|.++||||=|+.-|+ +.|++|.=+
T Consensus 85 ~~~~~i~~L~~~~~-i~~--~--------~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 85 APQKQLQSLRSLSF-IER--N--------ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCHHHHHHHhcCCc-hhc--C--------CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44455556666666 332 1 249999999999999998885 468877643
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.17 E-value=4.3 Score=37.12 Aligned_cols=51 Identities=33% Similarity=0.612 Sum_probs=30.2
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 217 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
..+....+.+.+.+|. +.|+ -++|.|.++||||=|+.=+| ++|++|.=+..
T Consensus 29 ~~~~~~~~~l~~~~~~---~~~~--------~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 29 GIDKAQIAQLAALEFI---ENGE--------NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -----HHHHHHHH-S----SC----------EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred hHHHHHHHHHhcCCCc---ccCe--------EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 3445566666666664 2222 39999999999999988776 48998866554
No 209
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=64.12 E-value=11 Score=33.27 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|+++|.+++|||-+...|.+.-+
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~~ 25 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEF 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999885433
No 210
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=63.96 E-value=15 Score=30.90 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|-+.+|||-+.-.|.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999998888754
No 211
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=63.88 E-value=39 Score=29.72 Aligned_cols=142 Identities=23% Similarity=0.215 Sum_probs=81.8
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhh--hhhCCCCCCCCCCCcCcEEEE
Q 016625 175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEF--TIKQDDGALPQNLQKADIILS 252 (386)
Q Consensus 175 ~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEF--AlkhDDG~~p~~L~~ADIVLv 252 (386)
+..++.+|.+++|+ +-+ +++..|+... -....-++++|++.|+--. .+... -=||-.
T Consensus 10 ~~lA~~L~~~fiD~-D~~---i~~~~g~si~-------~i~~~~G~~~fr~~E~~~l~~l~~~~----------~~VIa~ 68 (158)
T PF01202_consen 10 KLLAKRLGRPFIDL-DDE---IEERTGMSIS-------EIFAEEGEEAFRELESEALRELLKEN----------NCVIAC 68 (158)
T ss_dssp HHHHHHHTSEEEEH-HHH---HHHHHTSHHH-------HHHHHHHHHHHHHHHHHHHHHHHCSS----------SEEEEE
T ss_pred HHHHHHhCCCcccc-CHH---HHHHhCCcHH-------HHHHcCChHHHHHHHHHHHHHHhccC----------cEEEeC
Confidence 45677889999996 654 5788886552 1122335789998875433 22221 224444
Q ss_pred ccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHH
Q 016625 253 GVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDY 332 (386)
Q Consensus 253 GVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~ 332 (386)
|-. + +++-.++ +-| . ....+|-|..+++.|.+ |+...+. ...+.+...
T Consensus 69 GGG-~-----~~~~~~~----------------~~L-~-~~g~vI~L~~~~~~l~~----Rl~~~~~----Rp~l~~~~~ 116 (158)
T PF01202_consen 69 GGG-I-----VLKEENR----------------ELL-K-ENGLVIYLDADPEELAE----RLRARDN----RPLLKGKME 116 (158)
T ss_dssp -TT-G-----GGSHHHH----------------HHH-H-HHSEEEEEE--HHHHHH----HHHHHCT----SGGTCSHHH
T ss_pred CCC-C-----cCcHHHH----------------HHH-H-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCh
Confidence 421 1 1111111 112 1 45779999999999886 2322221 123333333
Q ss_pred ---HHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHH
Q 016625 333 ---VREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLY 370 (386)
Q Consensus 333 ---I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~ 370 (386)
+.+-+..=..+|++. ..-+| ++.++.||+|+.|++.+
T Consensus 117 ~~~~~~~~~~R~~~Y~~~-a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 117 HEEILELLFEREPLYEQA-ADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSEEEETSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CeEEEeCCCCCHHHHHHHHHHHh
Confidence 444444456788887 77788 88888899999999876
No 212
>PTZ00202 tuzin; Provisional
Probab=63.81 E-value=29 Score=37.83 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=58.5
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhH
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLV 305 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdper 305 (386)
++++.=++...|...++ =++|+|.++||||=++-.++...-++ .+| ++.. -
T Consensus 271 la~Lr~VL~~~d~~~pr-----ivvLtG~~G~GKTTLlR~~~~~l~~~-------------qL~-vNpr----------g 321 (550)
T PTZ00202 271 ESWVRQVLRRLDTAHPR-----IVVFTGFRGCGKSSLCRSAVRKEGMP-------------AVF-VDVR----------G 321 (550)
T ss_pred HHHHHHHHhccCCCCce-----EEEEECCCCCCHHHHHHHHHhcCCce-------------EEE-ECCC----------C
Confidence 34555555544444342 46899999999999998888542211 121 1211 1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 306 LQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 306 L~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
-.+..+.=++.||++. ......-.++|++.|..+.. .+. ..||| ++-+
T Consensus 322 ~eElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~--e~G-rtPVLII~lr 370 (550)
T PTZ00202 322 TEDTLRSVVKALGVPN-VEACGDLLDFISEACRRAKK--MNG-ETPLLVLKLR 370 (550)
T ss_pred HHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHH--hCC-CCEEEEEEec
Confidence 1444555588999843 22234456888888887766 223 56787 6543
No 213
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=63.76 E-value=5 Score=32.35 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
+=|+|+|.+++|||-+--.|..........|.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~ 35 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT 35 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce
Confidence 3489999999999999888875545555555443
No 214
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=63.60 E-value=19 Score=31.19 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
..|++||.+.+|||-+.-.|.+..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~ 27 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF 27 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4699999999999999988875433
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=63.57 E-value=4.8 Score=41.51 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
-|||.|||-+.+|||=|-=-|.+.-.+|+|||.+-
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT 193 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTT 193 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCc
Confidence 58999999999999999888885557999999763
No 216
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.53 E-value=5.2 Score=42.36 Aligned_cols=41 Identities=39% Similarity=0.521 Sum_probs=30.4
Q ss_pred hCCCCCCCCCCCc---CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016625 234 KQDDGALPQNLQK---ADIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 234 khDDG~~p~~L~~---ADIVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
--|-|+..-.+.+ +=|.+||+-++|||-+|-=|| ++|||++
T Consensus 86 l~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~ 133 (483)
T KOG0780|consen 86 LLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVA 133 (483)
T ss_pred HhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCcee
Confidence 3455666554443 447889999999999887666 5799987
No 217
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=63.35 E-value=4.7 Score=38.96 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|-++|.|++|||=++--|+ ++||||+=+
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 5689999999999988555 679999987
No 218
>PRK14974 cell division protein FtsY; Provisional
Probab=63.28 E-value=5.5 Score=40.49 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA----~~G~KVAN 275 (386)
=|+++|+.++|||=++--|| ++|++|+-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 38899999999999555554 56777765
No 219
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.20 E-value=4.9 Score=41.69 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
--|++||+.++|||=|+.-||.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999993
No 220
>PRK06851 hypothetical protein; Provisional
Probab=63.11 E-value=12 Score=38.79 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=76.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC----CCC------------CCccccc-cCCCcEEEE---ecC
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM----GVE------------LPKSLFQ-VDPEKVFGL---TIN 302 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~--PLVp----~v~------------lP~eLf~-i~~~KI~GL---TId 302 (386)
++|-|..+||||=+...+| .+|++|.=| |+-| ++= -|-+++. .+...++-| -+|
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~viIPel~~ai~d~t~ph~~~P~~~g~e~i~ly~~~~d 296 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMVIIPELNFAIFDSTAPHEYFPSREGDEIIDMYDELID 296 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceEEeccCCEEEEeCCCCcccCCCCCcceeeechhhhcC
Confidence 8999999999999998877 679988765 3444 111 2333321 122467777 899
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE--ccCccHHHHHHHHHHHHhc
Q 016625 303 PLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI--VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 303 perL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI--VT~kSIEEtAa~Il~~~~~ 372 (386)
++.|..-+++-. ... ...+.-+++..+=|..|+.+..++ ..-+| +--..+++....|++.+..
T Consensus 297 ~~~l~~~~~eI~-~~~-----~~~~~~~~~A~~~l~~Ak~~hD~l-E~~Y~~amDf~kv~~~~~~l~~~i~~ 361 (367)
T PRK06851 297 PGTDEKYAEEIK-KAK-----ERYKAKLNEATSFLAKAKALHDKL-EEIYIPAMDFSKVDAIKEEILERILR 361 (367)
T ss_pred HHhHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999988665433 221 123445566677788888877775 44455 5666777777777776544
No 221
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=62.98 E-value=41 Score=29.50 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+--|+++|-+.+|||-+--.|..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHcc
Confidence 34699999999999999888864
No 222
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=62.80 E-value=5.6 Score=36.93 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|.|.|.++||||=++=+|+.+|++|-+
T Consensus 8 igitG~igsGKSt~~~~l~~~g~~v~d 34 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAEMGCELFE 34 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEe
Confidence 678999999999999999999988854
No 223
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=62.74 E-value=5.2 Score=39.18 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|+++|+.++|||=|+.=|| ++|+||+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 7789999999999887666 5577775
No 224
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=62.72 E-value=13 Score=33.24 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|++||-+.+|||=+...|++
T Consensus 2 i~ivG~~~vGKTsli~~l~~ 21 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCL 21 (190)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999988874
No 225
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=62.70 E-value=25 Score=31.27 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=|+++|.+.+|||-+--.+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999888764
No 226
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=62.68 E-value=5.6 Score=38.14 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|||+|+++||||=++-.||++
T Consensus 5 iil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 788899999999999999954
No 227
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=62.66 E-value=8 Score=33.92 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~ 276 (386)
|+|||-+++|||-+-.-+.+..+.+.+|
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~f~~~~~ 34 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLNAY 34 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccC
Confidence 8999999999999988777655553454
No 228
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=62.60 E-value=8 Score=38.80 Aligned_cols=46 Identities=35% Similarity=0.502 Sum_probs=31.3
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016625 218 LSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDD-----G~-~p~~L~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+++..-+=.++|++-+.|.+ |. .|++ ++|.|.++||||-+.-.+|+
T Consensus 127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~g-----vLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 127 LEEQIREIREAVELPLKHPELFEEVGIEPPKG-----VLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce-----EEEECCCCCCHHHHHHHHHH
Confidence 33444444456676666654 22 2222 99999999999999999994
No 229
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=62.44 E-value=5.6 Score=38.85 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhh
Q 016625 243 NLQKADI-ILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSiYLA 267 (386)
|+..-.| .+.|.++||||-+|+.||
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~ 116 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLA 116 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5555555 488999999999999998
No 230
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=62.01 E-value=45 Score=28.84 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.2
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|-+.+|||-+-..|...
T Consensus 3 v~~~G~~~~GKTsli~~l~~~ 23 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999998887643
No 231
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=61.92 E-value=7.6 Score=39.73 Aligned_cols=48 Identities=33% Similarity=0.481 Sum_probs=34.8
Q ss_pred CCcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 217 PLSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 217 ~ld~~YF~RIeAIEFAlkhDD-----G~-~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+++..-+=.++|++-+.|-+ |. .|. =|+|.|.++||||-++-++|+.
T Consensus 135 Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~-----gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 135 GLEEQIREVREAVELPLKKPELFEEVGIEPPK-----GVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC-----ceEEECCCCCChHHHHHHHHHH
Confidence 455666666677777777643 32 232 2899999999999999999953
No 232
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=61.85 E-value=19 Score=31.02 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|+++|.+++|||=+.-.|.+.-+
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~~f 28 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSF 28 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhCcC
Confidence 89999999999999888875433
No 233
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=61.74 E-value=6.7 Score=35.87 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=26.4
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh----hcCceeeec
Q 016625 243 NLQKADII-LSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|+..-.++ |.|.++||||=+++.+| ..|.+|+-+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 55555554 78999999999999999 346777766
No 234
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=61.31 E-value=6 Score=35.05 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.++|.+++|||.++.-|+ ..|.||.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 6789999999999887666 4566653
No 235
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=61.26 E-value=40 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
--|+|+|.+++|||-|-.+|..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4599999999999999988864
No 236
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=61.26 E-value=26 Score=30.63 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcC-----------------CHHHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLA-----------------DPSMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlv-----------------d~elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
.+.+.++++.+++.++ +|+.|.. -..+.+.+++.|++.+++++|+...+.+
T Consensus 82 ~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~~~ 150 (183)
T cd04501 82 KDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFYSPLLD 150 (183)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEechhhhhc
Confidence 4455666777766554 4555421 1366778999999999999999887554
No 237
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=61.09 E-value=3.9 Score=40.01 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCCChhh----HHhhhcCce
Q 016625 247 ADIILSGVSRTGKTPLS----IYLAQKGYK 272 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlS----iYLA~~G~K 272 (386)
..++|.|.++||||-+. .+|...|+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 46999999999999999 444456664
No 238
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=61.03 E-value=17 Score=31.49 Aligned_cols=87 Identities=10% Similarity=-0.007 Sum_probs=55.0
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEec--cccCCHHHHHHHHHHHHhCCCEEEEEcCC-----HHHH
Q 016625 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLF--SGIDDVEQLMVIIKQAAKDGAMLVYTLAD-----PSMA 171 (386)
Q Consensus 99 ~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~--p~V~t~e~l~~il~~a~~~~~iV~~Tlvd-----~elr 171 (386)
.|--.+..++.++..+.+..+.+-... ++-+..+ --....++++++++.+..+..+|+.|... .+++
T Consensus 25 ~i~a~~g~~~~~~~~~l~~~~~~~~~~------d~vvi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n 98 (150)
T cd01840 25 QIDAKVGRQMSEAPDLIRQLKDSGKLR------KTVVIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPHVPRPWEPDVN 98 (150)
T ss_pred EEEeeecccHHHHHHHHHHHHHcCCCC------CeEEEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECCCCcchHHHHH
Confidence 444455556677777777766543111 1111110 11136889999998885434577766654 4788
Q ss_pred HHHHHHHHHc-CCCEeecchH
Q 016625 172 ESAKKACELW-GIPSTDVLGP 191 (386)
Q Consensus 172 ~~l~~~~~~~-~i~~vDll~p 191 (386)
+.+++.|+++ +++++|+...
T Consensus 99 ~~~~~~a~~~~~v~~id~~~~ 119 (150)
T cd01840 99 AYLLDAAKKYKNVTIIDWYKA 119 (150)
T ss_pred HHHHHHHHHCCCcEEecHHHH
Confidence 9999999999 9999997654
No 239
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=60.97 E-value=23 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=20.8
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
-|+|+|.+.+|||.|--=|-+..+-....|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~ 31 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQA 31 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCC
Confidence 489999999999998655544444443333
No 240
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=60.85 E-value=5.8 Score=40.23 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=62.3
Q ss_pred ccccCCHHHHHHHHHHHHhCCC-EEEE----------EcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCC
Q 016625 138 FSGIDDVEQLMVIIKQAAKDGA-MLVY----------TLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSG 206 (386)
Q Consensus 138 ~p~V~t~e~l~~il~~a~~~~~-iV~~----------Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~ 206 (386)
.||| +.+.+..+++.+...++ +++. .+...++...+.+ +-..|. ..++..+.+ ++.....
T Consensus 103 ~P~i-~~~~i~~L~~~~~~~~~~~v~~~~g~~g~Pl~aiy~~~~~~~l~~-~l~~G~------~~l~~~l~~-~~~~~v~ 173 (366)
T PRK14489 103 TPFL-PENLVKRLSKALAIEGADIAVPHDGERAHPLFALYHRSCLPALRR-YLAEGE------RRLFDFFQR-QRVRYVD 173 (366)
T ss_pred cCCC-CHHHHHHHHHHhhccCCeEEEEecCCCceeeEEEEcHHHHHHHHH-HHHhCC------ccHHHHHHh-CCcEEEe
Confidence 6898 77888888886543332 3321 1455666666665 333332 122222221 1111110
Q ss_pred CCCCCCCCCCCCc--HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 207 LPRGAPGRNFPLS--EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 207 ~~~~~pG~~~~ld--~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
.+. .++....+| ++|- +..+ --|| ++..-.. =|-++|-|+||||-+.--|. ++||||+=|=
T Consensus 174 ~~~-~~~~~~nINTpeDl~-~l~~------~~~~-~~~~~~~-~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 174 LST-QKDAFFNVNTPEDLE-QLRA------IPDG-TTTGAPP-LLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred ccC-CccccccCCCHHHHH-HHhh------hhhc-ccCCCcc-EEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 000 123344555 6663 3322 2233 1111112 27889999999999977655 7899998553
No 241
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.75 E-value=15 Score=36.35 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhh
Q 016625 150 IIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAI 229 (386)
Q Consensus 150 il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAI 229 (386)
.++.. ..+.+||..+.++.+. +.|.++||.++|.+.- +.+ -. ...+...+. |+
T Consensus 87 ~l~~l-~~~~~v~~G~~~~~~~----~~~~~~gi~~~~~~~~--~~~----~~------------~ns~~~aeg----av 139 (296)
T PRK08306 87 LLELT-PEHCTIFSGIANPYLK----ELAKETNRKLVELFER--DDV----AI------------LNSIPTAEG----AI 139 (296)
T ss_pred HHHhc-CCCCEEEEecCCHHHH----HHHHHCCCeEEEEecc--chh----hh------------hccHhHHHH----HH
Confidence 34443 4557788899999855 5577999999998653 111 00 011122232 33
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016625 230 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 230 EFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
-.++++- +.++..+-+.++|..++|++ +..+|..+|.+|.
T Consensus 140 ~~a~~~~----~~~l~g~kvlViG~G~iG~~-~a~~L~~~Ga~V~ 179 (296)
T PRK08306 140 MMAIEHT----PITIHGSNVLVLGFGRTGMT-LARTLKALGANVT 179 (296)
T ss_pred HHHHHhC----CCCCCCCEEEEECCcHHHHH-HHHHHHHCCCEEE
Confidence 3344332 24566788999999999965 7777888887654
No 242
>PRK08727 hypothetical protein; Validated
Probab=60.72 E-value=5.8 Score=37.46 Aligned_cols=31 Identities=42% Similarity=0.592 Sum_probs=25.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLV 279 (386)
++|.|.|+||||=|.-.++ ++|++|.=+|+.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 9999999999999988874 568888777653
No 243
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=60.56 E-value=11 Score=32.43 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+++|.+.+|||=+-..|.+.
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999988777643
No 244
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=60.55 E-value=4.1 Score=41.73 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+||||+|+||||=|-=-+|
T Consensus 32 ~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999998766655
No 245
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=60.49 E-value=19 Score=32.52 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcC---------CHHHHHHHHHHHHHcCCCEeecchH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLA---------DPSMAESAKKACELWGIPSTDVLGP 191 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlv---------d~elr~~l~~~~~~~~i~~vDll~p 191 (386)
.+.+..+++++++.++ +|+.++. ...+++.+++.|++++++++|++.+
T Consensus 94 ~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~~~ 151 (191)
T PRK10528 94 EQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFFME 151 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4667777777765552 3443331 1357778899999999999998643
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=60.46 E-value=5.2 Score=36.77 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=18.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
+.|.|.|+||||-+++.||.
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999983
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=60.35 E-value=4 Score=35.80 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
++|.|.++||||=+++-++ ..|.+|.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~ 31 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGL 31 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6889999999999998765 3455554
No 248
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=60.33 E-value=4.2 Score=37.49 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
|+..-. ++|.|.++||||-+++.++ ++|.+|.-+-+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 444444 5678999999999998655 45666655544
No 249
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=60.28 E-value=40 Score=29.26 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+++|.+++|||=|-..|...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC
Confidence 34999999999999887777644
No 250
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=60.27 E-value=43 Score=28.59 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=36.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+.+=+.++.++.+.+.|+..+||++.++.. ..|...+|.++
T Consensus 37 VI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~--~eLg~a~Gk~~ 79 (104)
T PRK05583 37 IIISNDISENSKNKFKNYCNKYNIPYIEGYSK--EELGNAIGRDE 79 (104)
T ss_pred EEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH--HHHHHHhCCCC
Confidence 66667778999999999999999999998544 78999999876
No 251
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=60.27 E-value=26 Score=35.46 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016625 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (386)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~ 175 (386)
.+++++--+..|.. |+.+++.+..-.|++ +++.+. -.|.+.+...+.+++ --+||.++-+.+.|.++.
T Consensus 40 nRQflf~~~dVGk~Kaevaa~~l~~lNp~v------~V~~~~-~~i~~~~~~~~f~~~----~DvVv~a~Dn~~ar~~in 108 (312)
T cd01489 40 NRQFLFRKKHVGKSKAQVAKEAVLSFNPNV------KIVAYH-ANIKDPDFNVEFFKQ----FDLVFNALDNLAARRHVN 108 (312)
T ss_pred CcCccCChhHcCcHHHHHHHHHHHHHCCCC------eEEEEe-ccCCCccchHHHHhc----CCEEEECCCCHHHHHHHH
Confidence 35555544555654 444455444445653 233222 234442222233332 359999999999999999
Q ss_pred HHHHHcCCCEeec
Q 016625 176 KACELWGIPSTDV 188 (386)
Q Consensus 176 ~~~~~~~i~~vDl 188 (386)
+.|..+++|+|+.
T Consensus 109 ~~c~~~~ip~I~~ 121 (312)
T cd01489 109 KMCLAADVPLIES 121 (312)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999995
No 252
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=60.12 E-value=16 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|++||-+++|||-+..-+.+.
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~ 23 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEG 23 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999998777643
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=59.86 E-value=4.9 Score=35.58 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|++.|.|+||||=++-.|++
T Consensus 10 I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999988873
No 254
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=59.69 E-value=5.2 Score=32.32 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
|+++|-+++|||-|.-+|++.-..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 799999999999999999966444
No 255
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=59.55 E-value=23 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|++||.+++|||-+...|.+.-+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999999988875433
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.55 E-value=6 Score=41.84 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+++|++++|||=++.-||.
T Consensus 226 i~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999993
No 257
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=59.49 E-value=64 Score=29.73 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhhcCc
Q 016625 243 NLQKADI-ILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSiYLA~~G~ 271 (386)
||..-++ +|.|.+++|||=+++.+|..+.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~ 38 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6666665 4579999999999999885433
No 258
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=59.49 E-value=46 Score=29.73 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.-|+|||.+.+|||-+-..+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4599999999999999888864
No 259
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=59.48 E-value=19 Score=32.97 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.7
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.-||+||-+.+|||=+-.-+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3499999999999988777764
No 260
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.36 E-value=6.6 Score=40.97 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=|+++|++++|||=|+.-||.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998884
No 261
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=59.31 E-value=6.6 Score=41.81 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|-++|-|.||||=|+--|. ++||||+=|
T Consensus 4 i~IvG~sgSGKTTLiekLI~~L~~rG~rVavI 35 (452)
T PRK14495 4 YGIIGWKDAGKTGLVERLVAAIAARGFSVSTV 35 (452)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4589999999999987665 789999974
No 262
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=59.31 E-value=25 Score=29.95 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
.-|+++|-+.+|||=+-..+.+ |--+.+++-.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~-~~~~~~~~~t 33 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ-GIFVEKYDPT 33 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh-CCCCcccCCc
Confidence 4589999999999998777774 3334555433
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=59.20 E-value=8.3 Score=32.04 Aligned_cols=30 Identities=47% Similarity=0.598 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
++|.|.++||||=++..++. +|.+|.-+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 57899999999999888873 3555554443
No 264
>PHA02244 ATPase-like protein
Probab=59.14 E-value=4.9 Score=41.91 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
.|.|.|.++||||-++.+||+. .|.|++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~----lg~pfv 148 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA----LDLDFY 148 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH----hCCCEE
Confidence 5999999999999999999954 345554
No 265
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=59.07 E-value=22 Score=38.50 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=29.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhc--------CceeeeccccC--CCCCCccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK--------GYKVANVPIVM--GVELPKSL 288 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~--------G~KVAN~PLVp--~v~lP~eL 288 (386)
+-|+|.|-++|||+=+.-++-+. +.+ +|-|+|. -..+|+++
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r-~~~pfv~inCaal~e~l 293 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGK-KSHPFVAVNCGAIAESL 293 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCcc-CCCCeEEeecccCChhh
Confidence 46999999999999988777654 434 6778885 23345444
No 266
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=59.06 E-value=21 Score=30.72 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
|++||-+++|||-+--.|.+.-+..+
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~~ 29 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTSA 29 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 89999999999998888876555333
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=59.06 E-value=4.8 Score=33.42 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|.|-|.+++|||=++-+||..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999954
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=59.01 E-value=7.9 Score=35.10 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=28.9
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhh----hcCceeeecccc
Q 016625 242 QNLQKADII-LSGVSRTGKTPLSIYLA----QKGYKVANVPIV 279 (386)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSiYLA----~~G~KVAN~PLV 279 (386)
.|+..-.++ |.|.++||||=+|+-+| ..|.+|+-+-.-
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 355555554 67999999999999988 457888877663
No 269
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=58.81 E-value=25 Score=35.73 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEE--cCCHHHHHHHHHHHHHcCCCEeecchH---HHHHHHHHhCCCCCCCCCCCCCCCC
Q 016625 143 DVEQLMVIIKQAAKDG-AMLVYT--LADPSMAESAKKACELWGIPSTDVLGP---ITEAIASHLGVSPSGLPRGAPGRNF 216 (386)
Q Consensus 143 t~e~l~~il~~a~~~~-~iV~~T--lvd~elr~~l~~~~~~~~i~~vDll~p---~i~~le~~lG~~p~~~~~~~pG~~~ 216 (386)
++++-.+.++++-+.+ +.|+.| +..+ +.+.+.|+++++|.+=..-. ++..+..+|...-.+.. ..+|
T Consensus 67 ~~e~~~~~~~~~~~~~~P~iIvt~~~~~p---~~l~~~a~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~-~~hg--- 139 (304)
T TIGR00679 67 PEEEQKQIIHNLLTLNPPAIILSKSFTDP---TVLLQVNETYQVPILKTDLFSTELSFRLETYLNEQFAPTA-AIHG--- 139 (304)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECcCCCC---HHHHHHHHHhCCcEEEeCCcHHHHHHHHHHHHHHhhccce-eeee---
Confidence 4566667777774444 444444 2222 56778899999998754332 23334444443321100 1222
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016625 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 217 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
-+| .+..-=|+|.|.|+.||+=|++-|-.+|++
T Consensus 140 ----------~~v-------------~i~g~gvli~G~sg~GKS~lal~Li~rg~~ 172 (304)
T TIGR00679 140 ----------VLV-------------EVYGVGVLITGKSGVGKSETALELINRGHR 172 (304)
T ss_pred ----------EEE-------------EECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 111 222234899999999999999999999976
No 270
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=58.81 E-value=22 Score=34.97 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=23.7
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
-=|.++|.+++|||=|+--|+ ..|+||+-+
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i 68 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI 68 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 348889999999999776655 569999843
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=58.74 E-value=7.7 Score=36.78 Aligned_cols=31 Identities=45% Similarity=0.598 Sum_probs=24.7
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
.=++|+|.++||||=+|+.++ ++|.++.-+.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457889999999999987654 4688887666
No 272
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=58.73 E-value=21 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|++||.+.+|||=+.-.|.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999998887743
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=58.64 E-value=7.9 Score=35.64 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=28.3
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 242 QNLQKADI-ILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
.|+..-.+ .|.|.++||||-+++-|| ..|.+|.-+-.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 35665655 577999999999999999 45778776654
No 274
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=58.45 E-value=5.3 Score=37.39 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=18.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.|+|+|+|.+|||=|-..|.+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHS
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 275
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=58.33 E-value=20 Score=30.98 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|++||.+++|||=+-..+.+..+
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~~ 25 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEF 25 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999877765544
No 276
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=58.30 E-value=30 Score=35.51 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=51.7
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++=-+..|. -|+.+.+.+..-+|++ ++..++ ++ +.+.+.+++++. -+|+.+.-+.+.|..+
T Consensus 82 ~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v--------~i~~~~~~i-~~~~~~~~~~~~----DlVid~~Dn~~~r~~i 148 (370)
T PRK05600 82 HRQILFGASDVGRPKVEVAAERLKEIQPDI--------RVNALRERL-TAENAVELLNGV----DLVLDGSDSFATKFLV 148 (370)
T ss_pred cccccCChhHCCCHHHHHHHHHHHHHCCCC--------eeEEeeeec-CHHHHHHHHhCC----CEEEECCCCHHHHHHH
Confidence 3555554455564 4555555555555653 334443 33 455555555432 4999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.+.|.++++|+|.
T Consensus 149 n~~~~~~~iP~v~ 161 (370)
T PRK05600 149 ADAAEITGTPLVW 161 (370)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999875
No 277
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=58.12 E-value=7.1 Score=41.11 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
.=++|.|.++||||=+++.++..|
T Consensus 22 ~~~Li~G~pGsGKT~la~qfl~~g 45 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLFSIQFLYNG 45 (484)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 337888999999999999775433
No 278
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=58.09 E-value=14 Score=31.92 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|.+++|||=+-.+|++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999998888743
No 279
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=57.87 E-value=23 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
|+|+|.+.+|||=+--=|....+.....|
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~~~~~~~~ 32 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHFVESYYP 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCccccCc
Confidence 89999999999988655554445444555
No 280
>PRK07283 hypothetical protein; Provisional
Probab=57.64 E-value=48 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=35.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGV 202 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~ 202 (386)
+++.+=++++.++.+.+.|+.++||++.++ ....|...+|.
T Consensus 38 Vi~A~Das~~~~kk~~~~~~~~~Vp~~~~~--t~~eLG~a~Gk 78 (98)
T PRK07283 38 VFLANDAGPNLTKKVTDKSNYYQVEVSTVF--STLELSAAVGK 78 (98)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC--CHHHHHHHhCC
Confidence 556677789999999999999999999987 45789999997
No 281
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=57.50 E-value=42 Score=30.61 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChh------hHHhhhcCc
Q 016625 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPL------SIYLAQKGY 271 (386)
Q Consensus 216 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPl------SiYLA~~G~ 271 (386)
|.+-+...+..-.++|.+.+.+ - ++|.|+.++|||=+ ..+|||.|+
T Consensus 7 hp~~~~~~~~~~~~~~~i~~~~----------~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 7 HPLLPLQGEKVVPLDIQLGENK----------RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred CCEEeccCCceEcceEEECCCc----------eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 3333333444566777776541 3 89999999999986 456678885
No 282
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=57.44 E-value=31 Score=31.55 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|+|||-+.+|||=+...+.+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~ 23 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQ 23 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3899999999999998888754
No 283
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=57.41 E-value=37 Score=34.95 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=50.3
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++=-+..|. -|+.+.+.+....|++ ++..++ .++ .+.+.+++++ --+|+.+.-+.+.|..+
T Consensus 83 ~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v--------~i~~~~~~i~-~~~~~~~~~~----~D~Vvd~~d~~~~r~~l 149 (392)
T PRK07878 83 QRQVIHGQSDVGRSKAQSARDSIVEINPLV--------NVRLHEFRLD-PSNAVELFSQ----YDLILDGTDNFATRYLV 149 (392)
T ss_pred ccccccChhcCCChHHHHHHHHHHHhCCCc--------EEEEEeccCC-hhHHHHHHhc----CCEEEECCCCHHHHHHH
Confidence 4565543333564 4555556566666653 333332 343 3445555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.++|.++++|+|.
T Consensus 150 n~~~~~~~~p~v~ 162 (392)
T PRK07878 150 NDAAVLAGKPYVW 162 (392)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999875
No 284
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=57.29 E-value=7 Score=36.89 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|||+|.++||||=++-.||.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999983
No 285
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=57.09 E-value=8.2 Score=35.80 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~ 276 (386)
|.|.|-++||||=.|=+|+.+|+.+-|-
T Consensus 4 igitG~igsGKst~~~~l~~~g~~vid~ 31 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSSEGFLIVDA 31 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeC
Confidence 7899999999999999999999988765
No 286
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.97 E-value=31 Score=29.96 Aligned_cols=27 Identities=11% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 168 PSMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 168 ~elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
.++.+.+++.|++.|++++|+..++-+
T Consensus 123 ~~~~~~~~~~a~~~~v~~vd~~~~~~~ 149 (189)
T cd01825 123 DAVIAAQRRVAKEEGIAFWDLYAAMGG 149 (189)
T ss_pred HHHHHHHHHHHHHcCCeEEeHHHHhCC
Confidence 356788999999999999999887643
No 287
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=56.96 E-value=56 Score=32.38 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=54.3
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
+++|..-+..|. =++.+.+.+..-.|++ +++.+ -.|+ +.+.+.+++. .+--+||.++-+..-+..|.+
T Consensus 72 RQ~~~~~~~vG~~Kve~~~~rl~~INP~~------~V~~i-~~~i-~~e~~~~ll~---~~~D~VIdaiD~~~~k~~L~~ 140 (268)
T PRK15116 72 RQIHALRDNVGLAKAEVMAERIRQINPEC------RVTVV-DDFI-TPDNVAEYMS---AGFSYVIDAIDSVRPKAALIA 140 (268)
T ss_pred cccccChhhcChHHHHHHHHHHHhHCCCc------EEEEE-eccc-ChhhHHHHhc---CCCCEEEEcCCCHHHHHHHHH
Confidence 566555445554 3556666666666764 33332 2344 4555555542 123599999999888999999
Q ss_pred HHHHcCCCEeecch
Q 016625 177 ACELWGIPSTDVLG 190 (386)
Q Consensus 177 ~~~~~~i~~vDll~ 190 (386)
.|.++++|++..+|
T Consensus 141 ~c~~~~ip~I~~gG 154 (268)
T PRK15116 141 YCRRNKIPLVTTGG 154 (268)
T ss_pred HHHHcCCCEEEECC
Confidence 99999999998865
No 288
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=56.72 E-value=7.5 Score=39.04 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.|+|++++|||=|+.=|| +.|.+|+
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 7799999999999887666 4566654
No 289
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=56.68 E-value=27 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
|+++|.+++|||=+.--|-+.. .+.+++-..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~ 32 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT-FVEEYDPTI 32 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC-CCcCcCCCh
Confidence 7899999999998776665333 445544443
No 290
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=56.49 E-value=8.1 Score=36.55 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~K 272 (386)
||++|||+|||+-.-=-|+ ..|+|
T Consensus 15 i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 15 IVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred EEEEecCCCChhhHHHHHHHHhCCc
Confidence 8999999999999988888 45754
No 291
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=56.38 E-value=47 Score=32.17 Aligned_cols=90 Identities=22% Similarity=0.394 Sum_probs=61.1
Q ss_pred HhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 016625 265 YLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF 344 (386)
Q Consensus 265 YLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf 344 (386)
|=|-+| .++=+=..+|.-| +.|+.++=|+++|+.+. |+..+| ...|-..+--++=+..-++|+
T Consensus 104 yS~AKg-----l~~dWc~~pd~gL--~KPDlvlfL~v~p~~~a-----~rggfG-----~Erye~v~fqekv~~~~q~l~ 166 (208)
T KOG3327|consen 104 YSAAKG-----LDLDWCKQPDVGL--PKPDLVLFLDVSPEDAA-----RRGGFG-----EERYETVAFQEKVLVFFQKLL 166 (208)
T ss_pred hhhhcC-----CCcchhhCCccCC--CCCCeEEEEeCCHHHHH-----HhcCcc-----hhHHHHHHHHHHHHHHHHHHH
Confidence 444555 3443334455555 45788999999999854 343333 346777666666667777777
Q ss_pred h-hCCCCcEE-ccCccHHHHHHHHHHHHhc
Q 016625 345 A-QNPVWPVI-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 345 ~-k~~~~pvI-VT~kSIEEtAa~Il~~~~~ 372 (386)
+ ..++|.++ .| +|+|+.=+.|..+++.
T Consensus 167 r~e~~~~~~vDAs-~sve~V~~~V~~i~e~ 195 (208)
T KOG3327|consen 167 RKEDLNWHVVDAS-KSVEKVHQQVRSLVEN 195 (208)
T ss_pred hccCCCeEEEecC-ccHHHHHHHHHHHHHH
Confidence 5 33689999 77 9999999999877754
No 292
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.33 E-value=8.5 Score=39.64 Aligned_cols=84 Identities=29% Similarity=0.459 Sum_probs=50.1
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceee----------------------eccccCCCCCCccccccCCCcEEEEecC
Q 016625 249 IILSGVSRTGKTPLS----IYLAQKGYKVA----------------------NVPIVMGVELPKSLFQVDPEKVFGLTIN 302 (386)
Q Consensus 249 IVLvGVSRTsKTPlS----iYLA~~G~KVA----------------------N~PLVp~v~lP~eLf~i~~~KI~GLTId 302 (386)
|.+|||.++|||-|. -||-+.|+||. |+|+|-+ + -|=+-.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~-------------~-~G~DpA 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG-------------K-EGADPA 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc-------------C-CCCCcH
Confidence 788999999999864 45557788873 5555541 0 011111
Q ss_pred hhHHHHHHHHHHhhcCC--CCCCCCCCCCHHHHHHHHHHHHHHHhhC
Q 016625 303 PLVLQSIRKARARSLGF--RDEIRSNYSEMDYVREELEFAGRIFAQN 347 (386)
Q Consensus 303 perL~~IR~eRl~~lGl--~~~~~S~YAs~e~I~~EL~~A~~lf~k~ 347 (386)
.-.-..|-..+.+...+ -+ ...+--+..+.-+||+.-.++.++.
T Consensus 208 aVafDAi~~Akar~~DvvliD-TAGRLhnk~nLM~EL~KI~rV~~k~ 253 (340)
T COG0552 208 AVAFDAIQAAKARGIDVVLID-TAGRLHNKKNLMDELKKIVRVIKKD 253 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-CcccccCchhHHHHHHHHHHHhccc
Confidence 11223444444432211 11 2345566778889999999999886
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.21 E-value=7.4 Score=41.05 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=23.6
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
.=|.|+|+.++|||=|+-=|| ++|+||+=+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 348899999999999887776 468877643
No 294
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=56.15 E-value=56 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=34.5
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=+++ ++.+.+...|+++|||++.+.. -..|...+|.+
T Consensus 50 VilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~t--k~eLG~a~Gk~ 92 (122)
T PRK04175 50 VVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPS--KKDLGKAAGLE 92 (122)
T ss_pred EEEeCCCChHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCC
Confidence 555666666 6889999999999999988764 48999999987
No 295
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.99 E-value=29 Score=30.04 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHh--CC-CEEEEEcCC------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAK--DG-AMLVYTLAD------------PSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~--~~-~iV~~Tlvd------------~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
+.+.++++.+.+ .+ .+|+.|+.. .++.+.+++.|++.|++++|+...+
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~ 134 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDLWAVF 134 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEechhhh
Confidence 445555666644 33 355555411 4577889999999999999998655
No 296
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=55.98 E-value=24 Score=34.75 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=74.8
Q ss_pred eEEeccccCCHHH--HHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHH--HHHHHHhCCCC---
Q 016625 134 NTHLFSGIDDVEQ--LMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPIT--EAIASHLGVSP--- 204 (386)
Q Consensus 134 ~~~~~p~V~t~e~--l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i--~~le~~lG~~p--- 204 (386)
-+..+.|.|..-+ +++.++++++-| ++++.=+--.|.- .+.+.|+++|+..+-++.|.. +.|........
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~-~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESD-YLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHH-HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcE
Confidence 3446677766544 466677776665 6888888766644 555689999999999999986 56766666554
Q ss_pred ---CCCCCCCCCCCCCCc---HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEc
Q 016625 205 ---SGLPRGAPGRNFPLS---EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSG 253 (386)
Q Consensus 205 ---~~~~~~~pG~~~~ld---~~YF~RIeAI-EFAlkhDDG~~-p~~L~~-----ADIVLvG 253 (386)
+. .+..|....+. .+|.+||... +-=|.-+=|.+ +++..+ ||.|+||
T Consensus 172 Y~vS~--~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 172 YLVST--TGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred EEEcC--CCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 11 13555444444 6688888752 11133344554 333332 8999999
No 297
>PRK06696 uridine kinase; Validated
Probab=55.92 E-value=8.6 Score=35.80 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhh-hc---Cceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLA-QK---GYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~---G~KVAN~P 277 (386)
|.+-|.|+||||-++--|| .. |.+|.-++
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 6677899999999999999 33 66655433
No 298
>PRK09267 flavodoxin FldA; Validated
Probab=55.89 E-value=96 Score=27.45 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCcCcEEEEccCCCCCCh---h------hHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016625 244 LQKADIILSGVSRTGKTP---L------SIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 314 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTP---l------SiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl 314 (386)
|..=-+.++|+..+...+ . --.|.++|.++...=...+-..+... .+...+.+||.+|+++=.+.+.+|+
T Consensus 78 l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~-~~~~~~~~g~~~d~~~~~~~td~~i 156 (169)
T PRK09267 78 FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASK-AVDDGKFVGLALDEDNQSELTDERI 156 (169)
T ss_pred CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccc-eeeCCEEEEEEecCCCchhhhHHHH
Confidence 444458899987655444 1 22356889888877666676666654 3335667999999998888888887
Q ss_pred h
Q 016625 315 R 315 (386)
Q Consensus 315 ~ 315 (386)
+
T Consensus 157 ~ 157 (169)
T PRK09267 157 E 157 (169)
T ss_pred H
Confidence 3
No 299
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=55.88 E-value=7.2 Score=39.80 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.4
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeeccccC
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM 280 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp 280 (386)
+.+|--++.+. -.|+|.|+++||||=+...|| ..|+..-.|=+.+
T Consensus 54 ~~~vl~~l~~~----------~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 54 TKAICAGFAYD----------RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred HHHHHHHHhcC----------CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 44566666542 249999999999999999999 5677766654444
No 300
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=55.82 E-value=30 Score=34.44 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=44.6
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccC-CCcEEEEecChhHHHHHHHHHH
Q 016625 249 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVD-PEKVFGLTINPLVLQSIRKARA 314 (386)
Q Consensus 249 IVLvGVSRTsKTPlS----iYLA~~G~KVAN~PLVp--------~v~lP~eLf~i~-~~KI~GLTIdperL~~IR~eRl 314 (386)
|+..|-=++|||=+| +++|++|.||--+=+=| +.++..+..++. .+.++++.|||+...+=..++.
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~ 82 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEV 82 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHH
Confidence 577899999999865 78889999998775555 566666766776 2458999999996555444444
No 301
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=55.78 E-value=55 Score=31.94 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=66.7
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCC-EEEEEcCCHHHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGA-MLVYTLADPSMAES 173 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~-iV~~Tlvd~elr~~ 173 (386)
..+..||++ -++=++++.+++.+..|| ++ ++--...+|.+ .++-.++++++.+.++ |||--|--|.==..
T Consensus 103 ~~~~~v~ll-G~~~~v~~~a~~~l~~~y-~l------~i~g~~~Gyf~-~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 103 KEGTPVFLV-GGKPEVLAQTEAKLRTQW-NV------NIVGSQDGYFT-PEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred hcCCeEEEE-CCCHHHHHHHHHHHHHHh-CC------EEEEEeCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 455889999 445558899999999999 64 34333467774 5566778888877664 88888888764444
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 174 l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+.+.....+.+.+=-.|-.++.++......|
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP 204 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAP 204 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCc
Confidence 5555555566654445666666665444444
No 302
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=55.52 E-value=32 Score=32.94 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016625 243 NLQKADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 243 ~L~~ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
.....-|||||-+++|||=+-..+.+..+
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F 38 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCY 38 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34456799999999999999988875433
No 303
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=55.48 E-value=14 Score=31.38 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|+|+|-+.+|||=+...+++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999998777753
No 304
>PRK00955 hypothetical protein; Provisional
Probab=55.40 E-value=26 Score=38.84 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=57.9
Q ss_pred CCCCCCcCcEEEEcc------CCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEe-cC-----hhHHH
Q 016625 240 LPQNLQKADIILSGV------SRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLT-IN-----PLVLQ 307 (386)
Q Consensus 240 ~p~~L~~ADIVLvGV------SRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLT-Id-----perL~ 307 (386)
..+|+++.|||||-= .=-|=-=++=+|-..||+|++++- |+..-++.+...-+.++|+++ -- .....
T Consensus 7 ~~~gw~~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~q-p~~~~~~~~~~~g~P~l~~~vs~g~~dsmv~~yt 85 (620)
T PRK00955 7 KKRGWDELDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQ-PNWRDLEDFKKLGKPRLFFLVSAGNMDSMVNHYT 85 (620)
T ss_pred HHcCCCccCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecC-CCcCChHHHHhhCCCcEEEEeccccHHHHHhhcc
Confidence 347999999999710 001111244566689999999954 555555665555667777763 22 23333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE
Q 016625 308 SIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI 353 (386)
Q Consensus 308 ~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI 353 (386)
.-|+.|-...=-+++ -+...-=+.=+.||+.+=+..|++|||
T Consensus 86 ~~~~~r~~d~ytpgg----~~~~rpdra~i~y~~~ik~~~p~~~Iv 127 (620)
T PRK00955 86 ASKKLRSKDAYSPGG----KMGLRPDRATIVYCNKIKEAYPDVPII 127 (620)
T ss_pred hhhhcccccccCCCC----ccCCCcchHHHHHHHHHHHHCCCCcEE
Confidence 344444321100000 011111133455666665556788887
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=55.33 E-value=7.5 Score=35.57 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|.|.|.|++|||-++-.|.++
T Consensus 5 IwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 306
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.29 E-value=1.5e+02 Score=29.46 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=83.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-----EcC
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-----TLA 166 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-----Tlv 166 (386)
...+.++.|.|.-+.....-.+.-..+--+ +++..+.||---+.+++.+.|+++.+++ ++.++ .+.
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~G------i~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~ 106 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVG------MDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQID 106 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccC
Confidence 456789999988876665555444443333 4577777775567888999999886663 56654 233
Q ss_pred CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc
Q 016625 167 DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK 246 (386)
Q Consensus 167 d~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ 246 (386)
..++.+.+ ...+ -+|-+.|+. .|.--.+ .+......+ ..=|+.+++ | |. ++..
T Consensus 107 ~~~~ld~I-~~aK-----DVdg~n~~n------~G~l~~~----~~~~~p~T~---~gii~~L~~---~--~i---~l~G 159 (283)
T PRK14192 107 ERACFDAI-SLAK-----DVDGVTCLG------FGRMAMG----EAAYGSATP---AGIMRLLKA---Y--NI---ELAG 159 (283)
T ss_pred HHHHHhcc-CHHH-----hcCCCCccc------cCccccC----CCcccCCcH---HHHHHHHHH---c--CC---CCCC
Confidence 33444444 3332 345555552 2211111 222222333 233344443 1 22 4444
Q ss_pred CcEEEEccCC-CCCChhhHHhhhcCcee
Q 016625 247 ADIILSGVSR-TGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 247 ADIVLvGVSR-TsKTPlSiYLA~~G~KV 273 (386)
..+++||-|+ .|| |++++|.++|..|
T Consensus 160 k~vvViG~gg~vGk-pia~~L~~~gatV 186 (283)
T PRK14192 160 KHAVVVGRSAILGK-PMAMMLLNANATV 186 (283)
T ss_pred CEEEEECCcHHHHH-HHHHHHHhCCCEE
Confidence 5799999999 665 9999999988654
No 307
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=55.21 E-value=89 Score=26.79 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcC---------CHHHHHHHHHHHHHcCCCEeecc
Q 016625 144 VEQLMVIIKQAAKDG-AMLVYTLA---------DPSMAESAKKACELWGIPSTDVL 189 (386)
Q Consensus 144 ~e~l~~il~~a~~~~-~iV~~Tlv---------d~elr~~l~~~~~~~~i~~vDll 189 (386)
.+.+.++++.+.+.+ .+|+.++. ...+.+.+++.|++++++++|++
T Consensus 87 ~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 87 RANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 345667777776555 36665542 24778899999999999999974
No 308
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.20 E-value=1.1e+02 Score=30.89 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=85.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-+ +...++.-...+..+ +++++.+.||---+++++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~P~LaiI~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id 105 (288)
T PRK14171 32 SPKLAIVLVGDNPA--SIIYVKNKIKNAHKI----GIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSID 105 (288)
T ss_pred CCeEEEEEeCCCcc--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCC
Confidence 34577788877654 455666666666543 46788999998889999999999886553 56665 3321 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.++.-.-+++| |=|.|. +..| +.|..+.-.|- .|- . =|+=++| | |. +|...+
T Consensus 106 ~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~~~~Pc-Tp~-------a---v~~lL~~---y--~i---~l~GK~ 161 (288)
T PRK14171 106 KNKILSAVSPSKDI---DGFHPLNVGYL--HSGISQGFIPC-TAL-------G---CLAVIKK---Y--EP---NLTGKN 161 (288)
T ss_pred HHHHHhccCccccc---ccCCccchhhh--hcCCCCCCcCC-CHH-------H---HHHHHHH---h--CC---CCCCCE
Confidence 22233333333333 444443 1111 12321110000 121 0 1111121 1 22 566778
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||=|.+==-|++++|.++|.-|
T Consensus 162 vvViGrS~iVGkPla~lL~~~~ATV 186 (288)
T PRK14171 162 VVIIGRSNIVGKPLSALLLKENCSV 186 (288)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEE
Confidence 9999999999999999999988655
No 309
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=54.99 E-value=24 Score=32.16 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=50.8
Q ss_pred HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016625 111 AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDV 188 (386)
Q Consensus 111 Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDl 188 (386)
...-++.++.+.. +.+.+. ++--.+.++-.+.++++...+ +||+.+.-...+...+++ |.+.|||+|-+
T Consensus 16 ~~~g~~~~a~~~g-------~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~-~~~~gIpvv~~ 86 (257)
T PF13407_consen 16 VIKGAKAAAKELG-------YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEK-AKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHT-------CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHH-HHHTTSEEEEE
T ss_pred HHHHHHHHHHHcC-------CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHH-HhhcCceEEEE
Confidence 3444555666654 233333 677778888888898875555 688888877788888866 66789999997
Q ss_pred chH
Q 016625 189 LGP 191 (386)
Q Consensus 189 l~p 191 (386)
-.+
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 666
No 310
>PTZ00369 Ras-like protein; Provisional
Probab=54.89 E-value=14 Score=32.95 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+.-|++||.+.+|||=|..-+.+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999877774
No 311
>PRK06835 DNA replication protein DnaC; Validated
Probab=54.88 E-value=12 Score=37.98 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=31.9
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 228 AIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
|.+|+=.++.+. --++|.|.++||||=|+.=+|+ +|++|.=++.
T Consensus 172 ~~~f~~~f~~~~-------~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 172 CKNFIENFDKNN-------ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHhccC-------CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 445766666432 2399999999999999988874 6877765554
No 312
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.87 E-value=39 Score=29.16 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHH
Q 016625 169 SMAESAKKACELWGIPSTDVLGPITEAIA 197 (386)
Q Consensus 169 elr~~l~~~~~~~~i~~vDll~p~i~~le 197 (386)
++.+.+++.|++.+++++|+...+.+...
T Consensus 134 ~~n~~l~~~a~~~~~~~iD~~~~~~~~~~ 162 (191)
T cd01834 134 AYADAVRELAAENGVAFVDLFTPMKEAFQ 162 (191)
T ss_pred HHHHHHHHHHHHcCCeEEecHHHHHHHHH
Confidence 44567888899999999999887765443
No 313
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.55 E-value=6.2 Score=39.86 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.7
Q ss_pred EEEEccCCCCCChh
Q 016625 249 IILSGVSRTGKTPL 262 (386)
Q Consensus 249 IVLvGVSRTsKTPl 262 (386)
+||||.|+||||-|
T Consensus 30 ~vliGpSGsGKTTt 43 (309)
T COG1125 30 LVLIGPSGSGKTTT 43 (309)
T ss_pred EEEECCCCCcHHHH
Confidence 79999999999965
No 314
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.45 E-value=8.3 Score=40.20 Aligned_cols=112 Identities=25% Similarity=0.259 Sum_probs=60.6
Q ss_pred hhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHhhhc-Cceee-ecc---ccC-------------CCCCC--
Q 016625 227 EAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYLAQK-GYKVA-NVP---IVM-------------GVELP-- 285 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSiYLA~~-G~KVA-N~P---LVp-------------~v~lP-- 285 (386)
.|+-|+=++=+ +.-+.--- |.|=|+.+||||-||-=|||| .++.- -|+ |+. ...+=
T Consensus 160 s~l~fsek~vn---tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~k 236 (423)
T KOG0744|consen 160 SALLFSEKKVN---TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAK 236 (423)
T ss_pred HHHHHHhcCCC---CceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHH
Confidence 45556655544 44333333 455699999999999999976 45521 111 111 11222
Q ss_pred -----ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHHhhCCCC
Q 016625 286 -----KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVW 350 (386)
Q Consensus 286 -----~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~A~~lf~k~~~~ 350 (386)
+||.+.+...||-|.=..|-|..-|+.=+ .++.=+| +.-|..=|-+-.+| +++|+.
T Consensus 237 mF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~--------S~~EpsDaIRvVNalLTQlDrl-K~~~Nv 298 (423)
T KOG0744|consen 237 MFQKIQELVEDRGNLVFVLIDEVESLAAARTSAS--------SRNEPSDAIRVVNALLTQLDRL-KRYPNV 298 (423)
T ss_pred HHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhh--------cCCCCchHHHHHHHHHHHHHHh-ccCCCE
Confidence 24445445556666666788888775543 1222233 33444555555555 444564
No 315
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=54.39 E-value=25 Score=29.65 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|.+.+|||=+.-.|.+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999988777754
No 316
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=54.23 E-value=9.8 Score=28.54 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=24.4
Q ss_pred EEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 016625 298 GLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF 339 (386)
Q Consensus 298 GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~ 339 (386)
|.+|+|+....|++..- . -.+.+.+||..|+..
T Consensus 1 gF~ie~~t~~ai~~~~~---~------L~~is~ERi~~El~k 33 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAE---L------LSKISKERIREELEK 33 (64)
T ss_dssp T-EE-HHHHHHHHHHGG---G------GGGS-HHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH---H------HhcCCHHHHHHHHHH
Confidence 67899999999998754 1 246899999999875
No 317
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=54.16 E-value=7.8 Score=38.06 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhh-----hcC-ceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLA-----QKG-YKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-----~~G-~KVAN~PLV 279 (386)
+|++|.|+||||-+---+| .+| +-..+-|+.
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 7999999999999887777 344 344445554
No 318
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=54.12 E-value=18 Score=41.18 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC-CCCCcCcEE-EEccCCCCCChhhHHh
Q 016625 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP-QNLQKADII-LSGVSRTGKTPLSIYL 266 (386)
Q Consensus 189 l~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p-~~L~~ADIV-LvGVSRTsKTPlSiYL 266 (386)
|.-.+..|++.+|...-- .-| +.=-+.++.|..-+..=|-.-. .||..--|+ |.|.++||||-+|+.+
T Consensus 11 ~~~~~~~~~~~~g~~~~~----~l~------~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~ 80 (790)
T PRK09519 11 LELAVAQIEKSYGKGSVM----RLG------DEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHA 80 (790)
T ss_pred HHHHHHHHHHHhccchhc----ccc------cccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 556788888888877631 111 1101122222222222222222 356655555 7799999999999776
Q ss_pred h
Q 016625 267 A 267 (386)
Q Consensus 267 A 267 (386)
+
T Consensus 81 ~ 81 (790)
T PRK09519 81 V 81 (790)
T ss_pred H
Confidence 5
No 319
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.10 E-value=67 Score=32.51 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=84.0
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-+ +...++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~p~LaiI~vgdd~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~ 105 (297)
T PRK14186 32 PPGLAVLRVGDDPA--SAVYVRNKEKACARV----GIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLD 105 (297)
T ss_pred CceEEEEEeCCChH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 44577888887764 344455544444432 35688889987789999999999885544 56665 4421 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..| +.|... -.|- .| .||=-=++|- |. +|...+
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~Pc-Tp--------------~aii~lL~~~-~i---~l~Gk~ 160 (297)
T PRK14186 106 EVPLLHAIDPDKD---ADGLHPLNLGRL--VKGEPG-LRSC-TP--------------AGVMRLLRSQ-QI---DIAGKK 160 (297)
T ss_pred HHHHHhccCcccC---cccCChhhHHHH--hCCCCC-CCCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 1223333333332 3555543 2222 223221 1000 12 1111111111 23 556678
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||=|.+==-|++++|.++|..|
T Consensus 161 vvVIGrS~iVGkPla~lL~~~~atV 185 (297)
T PRK14186 161 AVVVGRSILVGKPLALMLLAANATV 185 (297)
T ss_pred EEEECCCccchHHHHHHHHHCCCEE
Confidence 9999999998889999999998766
No 320
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=54.09 E-value=8.8 Score=33.12 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
++|+|.|++|||=|..-|.
T Consensus 18 v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh
Confidence 7899999999999887765
No 321
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=54.04 E-value=1.1e+02 Score=29.10 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.4
Q ss_pred hhhhhCCCCCCCCCCCc-----CcEEEEc
Q 016625 230 EFTIKQDDGALPQNLQK-----ADIILSG 253 (386)
Q Consensus 230 EFAlkhDDG~~p~~L~~-----ADIVLvG 253 (386)
++.|.-|-|.++.++.+ ||++++|
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aGad~iVvG 201 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAGANVIVAG 201 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 57788899999998854 7999999
No 322
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=53.98 E-value=9.4 Score=36.78 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=25.2
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 242 QNLQKADI-ILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
.|+..--+ ++.|.++||||=+|+-+| .+|.||.=+=
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35555554 458999999999999776 3466665443
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.87 E-value=8.6 Score=40.41 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhh-----hcCceeeec
Q 016625 247 ADIILSGVSRTGKTPLSIYLA-----QKGYKVANV 276 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA-----~~G~KVAN~ 276 (386)
.=|+++|+.++|||=++.-|| ++|+||+=+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458999999999999977766 247776543
No 324
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=53.72 E-value=9.5 Score=34.36 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhhcC-ceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG-YKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G-~KVAN~ 276 (386)
|.|.|-.+||||=.|-+|+++| +.+-+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 7899999999999999999887 777665
No 325
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=53.69 E-value=44 Score=33.87 Aligned_cols=79 Identities=10% Similarity=-0.017 Sum_probs=50.7
Q ss_pred cEEEEEeCChH---HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 98 KSIYMVSDGTG---WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 98 ~~IfiVSDsTG---eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
+++++--+-.| --|+.+.+.+..-+|++ +++.+..--+.+.+.+++++ --+||-+.-+.+.|..+
T Consensus 66 RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v--------~i~~~~~~~~~~~~~~~~~~----~DlVid~~D~~~~r~~i 133 (338)
T PRK12475 66 RQQLYTEEDAKQKKPKAIAAKEHLRKINSEV--------EIVPVVTDVTVEELEELVKE----VDLIIDATDNFDTRLLI 133 (338)
T ss_pred ccccccHHHccCCccHHHHHHHHHHHHCCCc--------EEEEEeccCCHHHHHHHhcC----CCEEEEcCCCHHHHHHH
Confidence 44444433333 24666666666666753 34444333345556555432 24888888999999999
Q ss_pred HHHHHHcCCCEeec
Q 016625 175 KKACELWGIPSTDV 188 (386)
Q Consensus 175 ~~~~~~~~i~~vDl 188 (386)
.+.|.++|+|.|..
T Consensus 134 n~~~~~~~ip~i~~ 147 (338)
T PRK12475 134 NDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998863
No 326
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=53.61 E-value=8.4 Score=40.62 Aligned_cols=39 Identities=36% Similarity=0.562 Sum_probs=27.8
Q ss_pred hhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 227 EAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 227 eAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+++++-+.|-+ |..+.. -++|.|+++||||-+.-++|+.
T Consensus 197 e~v~lpl~~p~~~~~~gi~~p~----gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 197 EAVELPLTHPELYDDIGIKPPK----GVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHHhhhhCHHHHHhcCCCCCc----EEEEECCCCCCHHHHHHHHHHh
Confidence 45666666543 333221 2899999999999999999953
No 327
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=53.44 E-value=7.8 Score=36.95 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-++|.|.++||||-++-.+|+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 328
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.33 E-value=8.4 Score=37.02 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
-++|.|.++||||=++.-+|+ .|.+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999994 4543
No 329
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=53.32 E-value=9.6 Score=32.45 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
|+|+|-+.+|||-+--.|.+.-..+.++|.
T Consensus 3 i~~~G~~~~GKssli~~l~~~~~~~~~~~~ 32 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRAKPEVAPYPF 32 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCccCCCCC
Confidence 799999999999999999865455555554
No 330
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=53.11 E-value=6.8 Score=41.63 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=25.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
.--|+|+|+++||||.++--||.. .|+|++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~----l~~~fi~ 80 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKL----ANAPFIK 80 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH----hCChhee
Confidence 356999999999999999999965 2566654
No 331
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=53.07 E-value=25 Score=30.45 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=35.8
Q ss_pred cccCCHHHHHHHHHHHHhCCCEEE-EEcC-------CHHHHHHHHHHHHHcCCCEeecc--hHHHHHHHHHhCCCC
Q 016625 139 SGIDDVEQLMVIIKQAAKDGAMLV-YTLA-------DPSMAESAKKACELWGIPSTDVL--GPITEAIASHLGVSP 204 (386)
Q Consensus 139 p~V~t~e~l~~il~~a~~~~~iV~-~Tlv-------d~elr~~l~~~~~~~~i~~vDll--~p~i~~le~~lG~~p 204 (386)
--+.|.+++++++++......+|| |+.. -.++.+++.....+..+.++||+ .|+=+.+++.||+.=
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 347899999999988655544555 4442 22333333333222457789997 589999999999974
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=52.93 E-value=28 Score=36.55 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=57.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccccCCCCCCccc------cccCCCcEEEEecChhHHHHHHH
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVMGVELPKSL------FQVDPEKVFGLTINPLVLQSIRK 311 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLVp~v~lP~eL------f~i~~~KI~GLTIdperL~~IR~ 311 (386)
|+..-. ++|.|.+++|||=+++.+|. +|.||.-+-.= +-+..+ +..+.++++-+ ....+.+|.+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E---es~~qi~~ra~rlg~~~~~l~~~--~e~~l~~i~~ 150 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE---ESASQIKLRAERLGLPSDNLYLL--AETNLEAILA 150 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc---ccHHHHHHHHHHcCCChhcEEEe--CCCCHHHHHH
Confidence 444444 45689999999999999983 47787665532 222222 12223333322 1122333332
Q ss_pred H----HHhhcCCCC-------CCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 312 A----RARSLGFRD-------EIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 312 e----Rl~~lGl~~-------~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
. ..+-+=+++ .-.+..-+..++++-+..-.++.+++ ++++| |.+.
T Consensus 151 ~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~-~itvilv~hv 207 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQR-GIAVFLVGHV 207 (446)
T ss_pred HHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeec
Confidence 2 111010110 00111224557777776677888887 99999 7553
No 333
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=52.90 E-value=16 Score=31.24 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|++||.+.+|||=|...|.+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 89999999999999755543
No 334
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=52.78 E-value=37 Score=28.71 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.|++||-+.+|||=+...|.+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888754
No 335
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=52.78 E-value=33 Score=30.57 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=39.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVV 366 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~I 366 (386)
++.+|-|.++++.+.+--..|.+ .+ ...+.+.+..+.--+.-++++++...|-+|-+++++||++++|
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r~~---~~---~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKRGE---LD---REEFEKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCC---cc---hHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 56799999999988764344421 11 1123333333333333445555333565665668999999875
No 336
>PRK07411 hypothetical protein; Validated
Probab=52.66 E-value=45 Score=34.39 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=53.1
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++=.+..|. -|+.+++.+...+|++ ++..++ .+ +.+.+.+++.+ --+|+.+.-+.+.|..+
T Consensus 79 ~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v--------~v~~~~~~~-~~~~~~~~~~~----~D~Vvd~~d~~~~r~~l 145 (390)
T PRK07411 79 QRQVIHGTSWVGKPKIESAKNRILEINPYC--------QVDLYETRL-SSENALDILAP----YDVVVDGTDNFPTRYLV 145 (390)
T ss_pred CcCcccChHHCCCcHHHHHHHHHHHHCCCC--------eEEEEeccc-CHHhHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 3566654444554 4666666677777763 344444 34 34455555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.+.|.+.++|.|.
T Consensus 146 n~~~~~~~~p~v~ 158 (390)
T PRK07411 146 NDACVLLNKPNVY 158 (390)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999883
No 337
>PRK06893 DNA replication initiation factor; Validated
Probab=52.66 E-value=9.9 Score=35.75 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLV 279 (386)
++|.|.|+||||=|..=+|| +|.+|.=+++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 78999999999999888774 57777655553
No 338
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=52.65 E-value=10 Score=34.61 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|.+|||||=++.-||..
T Consensus 4 ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 789999999999999999954
No 339
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.64 E-value=1.2e+02 Score=30.47 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=86.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-+ +...++.-...+..+ +++++.+.+|---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~ 105 (284)
T PRK14190 32 VPGLAVILVGDDPA--SHSYVRGKKKAAEKV----GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHID 105 (284)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 34567777776553 445555555555443 36789999998889999999999886553 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..| +.|.+. -.|- .| .|+=.-++|= |. +|...+
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~Pc-Tp--------------~av~~lL~~~-~i---~l~Gk~ 160 (284)
T PRK14190 106 EKAVIERISPEKD---VDGFHPINVGRM--MLGQDT-FLPC-TP--------------HGILELLKEY-NI---DISGKH 160 (284)
T ss_pred HHHHHhcCCcccc---ccccCHhhHHHH--hcCCCC-CCCC-CH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 2223333333333 3555553 2222 233221 1010 22 2222222221 12 577789
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
+++||=|.+==-|++++|.++|..|-
T Consensus 161 vvViGrS~iVG~Pla~lL~~~~atVt 186 (284)
T PRK14190 161 VVVVGRSNIVGKPVGQLLLNENATVT 186 (284)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEE
Confidence 99999999999999999999987664
No 340
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=52.64 E-value=42 Score=29.56 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.|++||-+++|||=|-.-+.+.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~ 25 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH 25 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999987666643
No 341
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.56 E-value=76 Score=31.99 Aligned_cols=148 Identities=16% Similarity=0.234 Sum_probs=85.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.- ..+..++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 38 ~P~Laii~vg~d~--aS~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~ 111 (287)
T PRK14176 38 TPGLATILVGDDP--ASKMYVRLKHKACERV----GIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLD 111 (287)
T ss_pred CCeEEEEEECCCc--chHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCC
Confidence 4457788887765 3455555555555543 46788999999889999999999886543 55554 4431 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++| |-|.|. +..| ++|.+. -.|- .| .||=..++|- |. +|...+
T Consensus 112 ~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~-~~Pc-Tp--------------~av~~ll~~~-~i---~l~Gk~ 166 (287)
T PRK14176 112 PQEAMEAIDPAKDA---DGFHPYNMGKL--MIGDEG-LVPC-TP--------------HGVIRALEEY-GV---DIEGKN 166 (287)
T ss_pred HHHHHhccCccccc---cccChhhhhhH--hcCCCC-CCCC-cH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 22233333333333 445443 2222 123221 1000 12 2333333331 12 677789
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||=|++==-|++++|.++|..|
T Consensus 167 vvViGrs~iVGkPla~lL~~~~atV 191 (287)
T PRK14176 167 AVIVGHSNVVGKPMAAMLLNRNATV 191 (287)
T ss_pred EEEECCCcccHHHHHHHHHHCCCEE
Confidence 9999999955559999999988553
No 342
>PF13479 AAA_24: AAA domain
Probab=52.33 E-value=7.8 Score=36.03 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.2
Q ss_pred EEEEccCCCCCChhhHHh
Q 016625 249 IILSGVSRTGKTPLSIYL 266 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYL 266 (386)
++|-|+|++|||.++.++
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 789999999999998765
No 343
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=52.22 E-value=10 Score=34.53 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=28.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
|.|+|-+.+|||=+==-|...-.+|+|+|=+-
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~T 34 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTT 34 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEESTTSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecCCCCCC
Confidence 78999999999988888886669999999774
No 344
>PLN02772 guanylate kinase
Probab=52.22 E-value=83 Score=33.21 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=60.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS 328 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA 328 (386)
|||+|+|++||+-|.=+|...--..-.+++---...|..- +.+. .=+.++-..+-...|.+...-..+.- .+-.|-
T Consensus 138 iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~g-E~dG-~dY~Fvs~eeFe~~i~~g~FlE~~e~--~Gn~YG 213 (398)
T PLN02772 138 IVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREM-EKDG-VHYHFTERSVMEKEIKDGKFLEFASV--HGNLYG 213 (398)
T ss_pred EEEECCCCCCHHHHHHHHhhhccccccccccccCCCCccc-ccCC-ceEeeCCHHHHHHHHHhCccceeeee--cCcccc
Confidence 9999999999999999997431111222222234555544 5553 44666533333333333333222211 123453
Q ss_pred C-HHHHHHH------------HHHHHHHHhhCCCCcEE-ccCccHHHHHHHHH
Q 016625 329 E-MDYVREE------------LEFAGRIFAQNPVWPVI-VTGKAIEETAAVVL 367 (386)
Q Consensus 329 s-~e~I~~E------------L~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il 367 (386)
. .+.|+.- +.-++++.+..+..-+| +..-|.||...++.
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~ 266 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLR 266 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHH
Confidence 3 3334333 23356665544343455 77778888777654
No 345
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=52.19 E-value=48 Score=33.72 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=49.6
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++--+..|. -|+.+++.+..-.|++ ++..++ .+ +.+.+.++++. --+|+-+.-+.+.|..+
T Consensus 69 ~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v--------~v~~~~~~i-~~~~~~~~~~~----~DvVvd~~d~~~~r~~~ 135 (355)
T PRK05597 69 HRQVIHSTAGVGQPKAESAREAMLALNPDV--------KVTVSVRRL-TWSNALDELRD----ADVILDGSDNFDTRHLA 135 (355)
T ss_pred ccCcccChhHCCChHHHHHHHHHHHHCCCc--------EEEEEEeec-CHHHHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 3455544344554 4555555555555653 333332 23 34455555533 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016625 175 KKACELWGIPSTD 187 (386)
Q Consensus 175 ~~~~~~~~i~~vD 187 (386)
.++|.++++|+|.
T Consensus 136 n~~c~~~~ip~v~ 148 (355)
T PRK05597 136 SWAAARLGIPHVW 148 (355)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999885
No 346
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=52.16 E-value=8.1 Score=39.79 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.5
Q ss_pred CCcCcEE-EEccCCCCCChhhHHhh
Q 016625 244 LQKADII-LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 244 L~~ADIV-LvGVSRTsKTPlSiYLA 267 (386)
+.+-+++ |+|+|+||||=|-.-+|
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHh
Confidence 4445555 99999999999988888
No 347
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=52.09 E-value=35 Score=34.69 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEeec---chHHHHHHHHHhCC--CCCCCCCCCCCCCC
Q 016625 143 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTDV---LGPITEAIASHLGV--SPSGLPRGAPGRNF 216 (386)
Q Consensus 143 t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~~i~~vDl---l~p~i~~le~~lG~--~p~~~~~~~pG~~~ 216 (386)
+.++..+.+++.-+.+ +.|+.|= +.+.-..+.+.|+++++|.+=- ...++..|..+|.. +|.. ..+|-.
T Consensus 67 ~~~~r~~~~~~l~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~~~---~iHg~~- 141 (308)
T PRK05428 67 SEEERKERLKKLFSLEPPCIIVTR-GLEPPPELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLAPRT---SVHGVL- 141 (308)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhhcc---eeeeEE-
Confidence 4556666777764443 5444443 2233345778999999998732 23344444444443 2211 133311
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016625 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 217 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
=++..-=|+|.|.|+.||+=|++-|-.+|++
T Consensus 142 -------------------------v~V~G~GvLi~G~SG~GKSelALeLi~rGh~ 172 (308)
T PRK05428 142 -------------------------VDIYGIGVLITGESGIGKSETALELIKRGHR 172 (308)
T ss_pred -------------------------EEECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 1222234899999999999999999999976
No 348
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=51.93 E-value=40 Score=31.04 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|++||-+.+|||=+-..|.+.
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~ 25 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEG 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999998888754
No 349
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=51.90 E-value=29 Score=36.15 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=30.9
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
.-|||=|||-.-.||.-|-=-+.+--=|+||||++-
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT 193 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT 193 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCcccc
Confidence 359999999999999877777777779999999873
No 350
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.78 E-value=25 Score=33.60 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred cccCCHHHHHHHHHHHHhCC--CEEEEEcC-C--HHHHHHHHHHHHHcCCCEeecchH--HHHHHHHHhCCCCCCC-CCC
Q 016625 139 SGIDDVEQLMVIIKQAAKDG--AMLVYTLA-D--PSMAESAKKACELWGIPSTDVLGP--ITEAIASHLGVSPSGL-PRG 210 (386)
Q Consensus 139 p~V~t~e~l~~il~~a~~~~--~iV~~Tlv-d--~elr~~l~~~~~~~~i~~vDll~p--~i~~le~~lG~~p~~~-~~~ 210 (386)
||+.+.++. ++++.+.| +++|+-+. + .++. .+.+.|+++|+..+=++.| ..+.++..+...+.-. -..
T Consensus 85 ~~~~~~~~~---i~~~~~~Gadgvii~dlp~e~~~~~~-~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 85 DYVDSLDNF---LNMARDVGADGVLFPDLLIDYPDDLE-KYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred hhhhCHHHH---HHHHHHcCCCEEEECCCCCCcHHHHH-HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEe
Confidence 456566554 44444333 57777553 2 4554 4557899999999999999 2345555554433100 000
Q ss_pred CCCCCCCCcH---HHHhhhhhh--hhhhhCCCCC-CCCCCCc-----CcEEEEc
Q 016625 211 APGRNFPLSE---EYFRRIEAI--EFTIKQDDGA-LPQNLQK-----ADIILSG 253 (386)
Q Consensus 211 ~pG~~~~ld~---~YF~RIeAI--EFAlkhDDG~-~p~~L~~-----ADIVLvG 253 (386)
.||--..+.. ++.+++..+ +--|.-|=|. +++++.+ ||.+++|
T Consensus 161 ~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 161 RPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 1221123443 355555543 2235567788 7766655 7999999
No 351
>PRK05480 uridine/cytidine kinase; Provisional
Probab=51.76 E-value=8.1 Score=35.24 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|.|.|.|+||||=|+--|++
T Consensus 9 I~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999884
No 352
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=51.52 E-value=43 Score=27.73 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEcC-----------------CHHHHHHHHHHHHHcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAKDGAMLVYTLA-----------------DPSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~~~~iV~~Tlv-----------------d~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
+.+.++++.+...+.+++.++. -..+.+.+++.|+++|++++|+...+
T Consensus 89 ~~l~~~i~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (179)
T PF13472_consen 89 QNLRRIIEQLRPHGPVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDLFDAF 153 (179)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHH
T ss_pred HHHHHHHHhhcccCcEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEECHHHH
Confidence 4456666777666677776662 15678889999999999999987663
No 353
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=51.51 E-value=52 Score=30.26 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.|+|+|.|.+|||=|-.+|.+.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999888888754
No 354
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=51.47 E-value=12 Score=34.26 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
+.++|.+|||||=.+..+| ..|-++.-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 5789999999999999998 445555544
No 355
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=51.40 E-value=10 Score=31.02 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=26.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccC
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVM 280 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~-G~KVAN~PLVp 280 (386)
+|+|+|.+++|||=+-=.|.+. -.++++.|-.-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T 34 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT 34 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce
Confidence 4899999999999999999953 45788877554
No 356
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=51.36 E-value=10 Score=37.48 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp 280 (386)
|.++|-|.||||=|+.-|+ ++| +|+=|=.-+
T Consensus 4 i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 6789999999999988776 678 887654433
No 357
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=51.34 E-value=81 Score=27.57 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.7
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..-|+++|-+++|||-+-..|..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc
Confidence 45799999999999998877764
No 358
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=51.08 E-value=1.6e+02 Score=26.79 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=46.6
Q ss_pred EEEEEeCChHHH---HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHH
Q 016625 99 SIYMVSDGTGWT---AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAES 173 (386)
Q Consensus 99 ~IfiVSDsTGeT---Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~ 173 (386)
.|-+|-.+|-.+ +-.+.+.+..+|++.. +-..+|.. +.+. ..++++.+-| .+++|-...+..-..
T Consensus 24 ~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~----i~~d~k~~----d~~~--~~~~~~~~~Gad~i~vh~~~~~~~~~~ 93 (206)
T TIGR03128 24 YVDIIEIGTPLIKNEGIEAVKEMKEAFPDRK----VLADLKTM----DAGE--YEAEQAFAAGADIVTVLGVADDATIKG 93 (206)
T ss_pred CeeEEEeCCHHHHHhCHHHHHHHHHHCCCCE----EEEEEeec----cchH--HHHHHHHHcCCCEEEEeccCCHHHHHH
Confidence 356677764444 3456677777787532 12233333 3332 1244444444 477777666544455
Q ss_pred HHHHHHHcCCCEe-ecchH
Q 016625 174 AKKACELWGIPST-DVLGP 191 (386)
Q Consensus 174 l~~~~~~~~i~~v-Dll~p 191 (386)
+.+.|+++|++++ ++++|
T Consensus 94 ~i~~~~~~g~~~~~~~~~~ 112 (206)
T TIGR03128 94 AVKAAKKHGKEVQVDLINV 112 (206)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 6667888999885 44555
No 359
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.07 E-value=41 Score=29.77 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCC-CEEEEEcCCH----------HHHHHHHHHHHHcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAKDG-AMLVYTLADP----------SMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~~~-~iV~~Tlvd~----------elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
+.+..+++++.+.+ .+|+.+.... ++.+.+++.|++.+++++|+...+
T Consensus 95 ~~l~~lv~~~~~~~~~vili~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWVGLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVDVWDGF 153 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEEhhHhh
Confidence 44555666665444 3555543221 578889999999999999997665
No 360
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.04 E-value=40 Score=33.84 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=85.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-. +...++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 30 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~ 103 (282)
T PRK14169 30 TPTLAVVLVGSDPA--SEVYVRNKQRRAEDI----GVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLD 103 (282)
T ss_pred CCeEEEEEeCCChh--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 34577888887654 445555555555443 36788999998889999999999886543 55554 4432 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..|. +|.+. -.|- .| .||=-=++|- |. +|..-+
T Consensus 104 ~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~~~-~~Pc-Tp--------------~avi~lL~~~-~i---~l~Gk~ 158 (282)
T PRK14169 104 EQAVIDAIDPDKD---VDGFSPVSVGRLW--ANEPT-VVAS-TP--------------YGIMALLDAY-DI---DVAGKR 158 (282)
T ss_pred HHHHHhhcCcccC---cccCChhhhHHHh--cCCCC-CCCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 2223333333333 3555552 22221 22211 0000 22 1111111111 22 455678
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
+++||=|.+==-|++++|.++|..|.
T Consensus 159 vvViGrS~iVGkPla~lL~~~~atVt 184 (282)
T PRK14169 159 VVIVGRSNIVGRPLAGLMVNHDATVT 184 (282)
T ss_pred EEEECCCccchHHHHHHHHHCCCEEE
Confidence 99999999988999999999987653
No 361
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=51.03 E-value=28 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+++|.+.+|||-+-..|.+
T Consensus 2 v~vvG~~~vGKTsll~~~~~ 21 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLY 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999998877764
No 362
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.00 E-value=2.1e+02 Score=28.78 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=84.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlv-d~e 169 (386)
...+.++.|.|.-. ....++.-..++..+ +++++.+.||---+.+++.+.|+++.++. +|+++ -|- .-+
T Consensus 31 ~P~Laii~vgdd~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~ 104 (281)
T PRK14183 31 VPGLAVILVGDDPA--SHTYVKMKAKACDRV----GIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHID 104 (281)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCC
Confidence 45677888877653 445555555555443 35688889988889999999999886553 55554 442 111
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.++...-+++ ||-|.|. +..| +.|.+. -.|- .| .|+=.=++|- |. +|...+
T Consensus 105 ~~~i~~~I~p~KD---VDGl~~~n~g~l--~~g~~~-~~Pc-Tp--------------~avi~lL~~~-~i---~l~Gk~ 159 (281)
T PRK14183 105 TTKILEAIDPKKD---VDGFHPYNVGRL--VTGLDG-FVPC-TP--------------LGVMELLEEY-EI---DVKGKD 159 (281)
T ss_pred HHHHHhccCchhc---ccccChhhhhHH--hcCCCC-CCCC-cH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 1223333333333 3555552 1222 233221 1010 12 1111111111 12 677779
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||=|.+==.|++++|.++|.-|
T Consensus 160 vvViGrS~~VG~Pla~lL~~~~AtV 184 (281)
T PRK14183 160 VCVVGASNIVGKPMAALLLNANATV 184 (281)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEE
Confidence 9999999999999999999988554
No 363
>PRK07952 DNA replication protein DnaC; Validated
Probab=50.93 E-value=47 Score=32.27 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.0
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 248 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
-++|.|.++||||=|+.-+| .+|++|.-+++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 58999999999999887776 45888876643
No 364
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=50.91 E-value=9.2 Score=34.27 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
.-|+|+|-+++|||-+--.|.+....+.|.|
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~ 72 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQL 72 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCcc
Confidence 5799999999999999988886655555554
No 365
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=50.78 E-value=17 Score=36.96 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016625 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 266 (386)
Q Consensus 189 l~p~i~~le~~lG~~p~~~~~~~pG~~~~ld-~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSiYL 266 (386)
|...+..|++.+|...-- .-|...... +..=--+.+++.++- .| ||..=- +.|.|.++||||=||+-+
T Consensus 6 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~i~TGi~~LD~~Lg--~G----Glp~G~iteI~G~~GsGKTtLaL~~ 75 (321)
T TIGR02012 6 LEAALAQIEKQFGKGSIM----RLGEKSVMDVETISTGSLSLDLALG--VG----GLPRGRIIEIYGPESSGKTTLALHA 75 (321)
T ss_pred HHHHHHHHHHHcCcceeE----ECcccccccCceecCCCHHHHHHhc--CC----CCcCCeEEEEECCCCCCHHHHHHHH
Confidence 456777888888876632 112111111 111222566777663 23 444444 458899999999999988
Q ss_pred hhc
Q 016625 267 AQK 269 (386)
Q Consensus 267 A~~ 269 (386)
+..
T Consensus 76 ~~~ 78 (321)
T TIGR02012 76 IAE 78 (321)
T ss_pred HHH
Confidence 743
No 366
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=50.76 E-value=83 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=35.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+.+=+.++.++.+...|++++||++.+.+ --..|...+|.+.
T Consensus 36 ViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~-tk~eLG~a~Gk~~ 79 (99)
T PRK01018 36 VIVASNCPKDIKEDIEYYAKLSGIPVYEYEG-SSVELGTLCGKPF 79 (99)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC-CHHHHHHHhCCCC
Confidence 5666667899999999999999999987533 4488888888764
No 367
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.69 E-value=31 Score=28.30 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=34.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHh
Q 016625 159 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHL 200 (386)
Q Consensus 159 ~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~l 200 (386)
-||+...++.++...+++.|++.|+|++=.=+.-+..|++.|
T Consensus 52 VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 52 VIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred EEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 466788999999999999999999999987656666666655
No 368
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=50.68 E-value=11 Score=34.85 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK-GYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~-G~KVAN 275 (386)
|.|.|..+||||=.+=+|+++ |+.+-+
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 789999999999999999987 887654
No 369
>PRK03003 GTP-binding protein Der; Reviewed
Probab=50.67 E-value=11 Score=39.53 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc-Cceeeeccc
Q 016625 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK-GYKVANVPI 278 (386)
Q Consensus 216 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~-G~KVAN~PL 278 (386)
..++..|-.+++|-+- .++ --|+|||-+.+|||=|---|.+. .-.+.+.|-
T Consensus 20 ~~~~~~~~~~~~~~~~----------~~~--~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~g 71 (472)
T PRK03003 20 WELDDEDLAELEAAEG----------GPL--PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG 71 (472)
T ss_pred cccchhhHHhhhcccC----------CCC--CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCC
Confidence 5667777777765332 222 24999999999999666556532 223445443
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=50.65 E-value=11 Score=34.49 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
|+..-+ +.|.|.|+||||-+++.+|
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 344444 4678999999999999998
No 371
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=50.52 E-value=9.3 Score=36.84 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||-+...+|+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999853
No 372
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=50.41 E-value=7.5 Score=36.17 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.7
Q ss_pred EccCCCCCChhhHHhh-hcCce
Q 016625 252 SGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 252 vGVSRTsKTPlSiYLA-~~G~K 272 (386)
+|||+||||-..-=|| +.|+|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCc
Confidence 5999999999999999 67865
No 373
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.29 E-value=55 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHH
Q 016625 168 PSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 168 ~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
.++.+.+++.|++++++++|+.+.+
T Consensus 155 ~~~~~~~~~~a~~~~~~~iD~~~~~ 179 (208)
T cd01839 155 KGLADAYRALAEELGCHFFDAGSVG 179 (208)
T ss_pred HHHHHHHHHHHHHhCCCEEcHHHHh
Confidence 4677889999999999999986643
No 374
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=50.11 E-value=61 Score=29.67 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCC
Q 016625 270 GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPV 349 (386)
Q Consensus 270 G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~ 349 (386)
++-|.++||.-+..+.+. -+.++-++.+++. |.+|+..-+ .+ +.+.+..-+........+...
T Consensus 107 ~~vv~e~pll~e~~~~~~-----~D~vi~V~a~~e~----~~~Rl~~R~-------~~-s~e~~~~ri~~Q~~~~~~~~~ 169 (194)
T PRK00081 107 PYVVLDIPLLFENGLEKL-----VDRVLVVDAPPET----QLERLMARD-------GL-SEEEAEAIIASQMPREEKLAR 169 (194)
T ss_pred CEEEEEehHhhcCCchhh-----CCeEEEEECCHHH----HHHHHHHcC-------CC-CHHHHHHHHHHhCCHHHHHHh
Confidence 577899999987655432 2579999999876 455654321 12 222333333222222222112
Q ss_pred CcEE-ccCccHHHHHHHHHHHHh
Q 016625 350 WPVI-VTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 350 ~pvI-VT~kSIEEtAa~Il~~~~ 371 (386)
+-++ .++.++||+...+.+++.
T Consensus 170 ad~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 170 ADDVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred CCEEEECCCCHHHHHHHHHHHHH
Confidence 3355 788899999999988774
No 375
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=50.06 E-value=60 Score=30.90 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016625 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (386)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~ 175 (386)
-.+.+++=.+-.|..--.+++..+.+... .++...+..--+.+.+.+++ +..-+|+..+.|-+-|..+.
T Consensus 70 L~rq~~~~~~dig~~Ka~~a~~~l~~ln~-------~v~v~~~~~~l~~~~~~~~~----~~~d~v~d~~dn~~~r~~iN 138 (254)
T COG0476 70 LQRQFLFTEADVGKPKAEVAAKALRKLNP-------LVEVVAYLERLDEENAEELI----AQFDVVLDCTDNFETRYLIN 138 (254)
T ss_pred cCceeeecccccCCcHHHHHHHHHHHhCC-------CCeEEEeecccChhhHHHHh----ccCCEEEECCCCHHHHHHHH
Confidence 56788888888888444444445555532 24455555544555555554 33459999999999999999
Q ss_pred HHHHHcCCCEeec
Q 016625 176 KACELWGIPSTDV 188 (386)
Q Consensus 176 ~~~~~~~i~~vDl 188 (386)
.+|..+++|+++.
T Consensus 139 ~~~~~~~~pli~~ 151 (254)
T COG0476 139 DACVKLGIPLVHG 151 (254)
T ss_pred HHHHHhCCCeEee
Confidence 9999999999884
No 376
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=49.83 E-value=9 Score=35.73 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|.+.|.|+||||=+|-.|+..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999954
No 377
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=49.81 E-value=49 Score=29.40 Aligned_cols=60 Identities=17% Similarity=0.024 Sum_probs=35.4
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh-CCCCcEE-ccCccHHHHHHHHHHHH
Q 016625 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-NPVWPVI-VTGKAIEETAAVVLRLY 370 (386)
Q Consensus 295 KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k-~~~~pvI-VT~kSIEEtAa~Il~~~ 370 (386)
..|.|+.+++.|.+-..+| |- . -......+.| .+.. ..-+-+| ++..++||+|+.|++.+
T Consensus 113 ~~v~l~~~~~~l~~R~~~R----~~----~--~~~~~~~~~~------~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 113 LWVGVRCPGEVAEGRETAR----GD----R--VPGQARKQAR------VVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred EEEEEECCHHHHHHHHHhc----CC----c--cchHHHHHHH------HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 4788888988776644444 21 1 1112111111 2222 1125578 99999999999999875
No 378
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=49.67 E-value=13 Score=33.41 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=17.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
||+||-+++|||=+-..|.+
T Consensus 3 ivivG~~~vGKTsli~~l~~ 22 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH 22 (201)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999887774
No 379
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=49.64 E-value=9.3 Score=39.85 Aligned_cols=34 Identities=41% Similarity=0.575 Sum_probs=27.1
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 242 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 242 ~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
..+...-|+|+|+++||||=+.-.||.. .|+|++
T Consensus 104 ~~~~~~~iLl~Gp~GtGKT~lAr~lA~~----l~~pf~ 137 (412)
T PRK05342 104 VELQKSNILLIGPTGSGKTLLAQTLARI----LDVPFA 137 (412)
T ss_pred cccCCceEEEEcCCCCCHHHHHHHHHHH----hCCCce
Confidence 3456678999999999999999999943 255665
No 380
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=49.46 E-value=11 Score=37.22 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016625 243 NLQKADII-LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSiYLA 267 (386)
|+..=.|+ |.|.++||||-+|+.||
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~ 123 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLA 123 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHH
Confidence 44444555 88999999999999999
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=49.33 E-value=17 Score=38.24 Aligned_cols=28 Identities=18% Similarity=0.038 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 329 EMDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 329 s~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
+..++++-+..-.++.+++ +++++ |++.
T Consensus 193 ~~~q~r~~~~~L~~~ak~~-giTvllt~hv 221 (454)
T TIGR00416 193 SVSQVRECTAELMRLAKTR-GIAIFIVGHV 221 (454)
T ss_pred CHHHHHHHHHHHHHHHHHh-CCEEEEEecc
Confidence 4567777777777788887 99999 8664
No 382
>PRK14529 adenylate kinase; Provisional
Probab=49.30 E-value=10 Score=36.34 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
|+|+|..++|||-.|-.|| .+|+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 8999999999999999999 566654
No 383
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.13 E-value=1.6e+02 Score=29.50 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=84.7
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HHH
Q 016625 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PSM 170 (386)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~el 170 (386)
..+.+++|.|.-+. ...++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+-
T Consensus 33 P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~ 106 (278)
T PRK14172 33 PKIASILVGNDGGS--IYYMNNQEKVANSL----GIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDE 106 (278)
T ss_pred ceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH
Confidence 35677888877543 44454444444432 36788999998889999999999886553 56554 4431 112
Q ss_pred HHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016625 171 AESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (386)
Q Consensus 171 r~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADI 249 (386)
.+.+..-.-+++ ||=|.|. +..|. .|.+. -.|- .| .|+=.=++|- |. +|...++
T Consensus 107 ~~i~~~I~p~KD---VDGl~~~n~g~l~--~g~~~-~~Pc-Tp--------------~av~~lL~~~-~i---~l~Gk~v 161 (278)
T PRK14172 107 KKITNKIDANKD---IDCLTFISVGKFY--KGEKC-FLPC-TP--------------NSVITLIKSL-NI---DIEGKEV 161 (278)
T ss_pred HHHHhccCcccc---cCccCHhhHHHHh--CCCCC-CcCC-CH--------------HHHHHHHHHh-CC---CCCCCEE
Confidence 223333333333 3555554 22221 23221 1000 22 1221122221 11 6777899
Q ss_pred EEEccCCCCCChhhHHhhhcCcee
Q 016625 250 ILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 250 VLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
++||=|.+==-|++++|.++|.-|
T Consensus 162 vViGrS~~VGkPla~lL~~~~AtV 185 (278)
T PRK14172 162 VVIGRSNIVGKPVAQLLLNENATV 185 (278)
T ss_pred EEECCCccchHHHHHHHHHCCCEE
Confidence 999999999999999999988655
No 384
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=49.11 E-value=31 Score=36.74 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=59.9
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016625 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (386)
Q Consensus 103 VSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~ 182 (386)
|....|.|-..+.+++|-|=|+ +..+--|++.+.+..+++.+ ..|-+|+.||--.+....+.+.. .+|
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPD----------vI~vGEiRd~eta~~a~~aa-~tGHlvlsTlHa~sa~~ai~RL~-~lg 359 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPD----------IIMVGEIRDLETAQIAIQAS-LTGHLVLSTLHTNDAAGAVTRLI-DMG 359 (486)
T ss_pred EccccCccHHHHHHHHHhcCCC----------EEEEeCCCCHHHHHHHHHHH-HhCCcEEEEECCCCHHHHHHHHH-HhC
Confidence 4567799999999999999886 45778899999998888765 56789999999999999999887 467
Q ss_pred CCEee
Q 016625 183 IPSTD 187 (386)
Q Consensus 183 i~~vD 187 (386)
++-..
T Consensus 360 ~~~~~ 364 (486)
T TIGR02533 360 VEPFL 364 (486)
T ss_pred CCHHH
Confidence 76433
No 385
>PRK05642 DNA replication initiation factor; Validated
Probab=49.10 E-value=12 Score=35.44 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=23.6
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~P 277 (386)
-=++|.|.++||||=|...++ ++|.+|.=++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 337899999999999987766 4577775443
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=49.09 E-value=9.8 Score=34.88 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|.|+|.|+||||=++=.|++.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999843
No 387
>PRK08223 hypothetical protein; Validated
Probab=48.91 E-value=30 Score=34.78 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCH--HHHH
Q 016625 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADP--SMAE 172 (386)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~~~~~iV~~Tlvd~--elr~ 172 (386)
.+++++-.+..|.. |+.+.+.+....|. ++++.++ .+ +.+.+.++++.. -+|+-.+-+. +.|.
T Consensus 68 nRQ~l~~~~diG~~Kve~a~~~l~~iNP~--------v~V~~~~~~l-~~~n~~~ll~~~----DlVvD~~D~~~~~~r~ 134 (287)
T PRK08223 68 NRQAGAMMSTLGRPKAEVLAEMVRDINPE--------LEIRAFPEGI-GKENADAFLDGV----DVYVDGLDFFEFDARR 134 (287)
T ss_pred ccccCcChhHCCCcHHHHHHHHHHHHCCC--------CEEEEEeccc-CccCHHHHHhCC----CEEEECCCCCcHHHHH
Confidence 45665555557754 45555555555565 3444454 33 455566666432 3777666554 8899
Q ss_pred HHHHHHHHcCCCEee
Q 016625 173 SAKKACELWGIPSTD 187 (386)
Q Consensus 173 ~l~~~~~~~~i~~vD 187 (386)
.+.++|.++|+|+|.
T Consensus 135 ~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 135 LVFAACQQRGIPALT 149 (287)
T ss_pred HHHHHHHHcCCCEEE
Confidence 999999999999987
No 388
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.86 E-value=35 Score=30.01 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHc-CCCEeecchHHH
Q 016625 168 PSMAESAKKACELW-GIPSTDVLGPIT 193 (386)
Q Consensus 168 ~elr~~l~~~~~~~-~i~~vDll~p~i 193 (386)
.++.+.+++.|.+. ++.++|+.+++.
T Consensus 136 ~~~n~~~~~~a~~~~~~~~id~~~~~~ 162 (191)
T cd01836 136 RLLNRALERLASEAPRVTLLPATGPLF 162 (191)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCccc
Confidence 36788899999998 999999988764
No 389
>PLN02674 adenylate kinase
Probab=48.79 E-value=11 Score=36.70 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.9
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
-|+|+|..++|||=+|-.|| .+|+..
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 49999999999999999999 567655
No 390
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=48.78 E-value=49 Score=28.63 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 168 PSMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 168 ~elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
.++.+.+++.|.+++++++|+...+..
T Consensus 116 ~~~n~~l~~~a~~~~~~~id~~~~~~~ 142 (174)
T cd01841 116 QRLNDAIKELAPELGVTFIDLNDVLVD 142 (174)
T ss_pred HHHHHHHHHHHHHCCCEEEEcHHHHcC
Confidence 356788899999999999999887643
No 391
>PRK12377 putative replication protein; Provisional
Probab=48.65 E-value=48 Score=32.27 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=29.2
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
.|.+|+-.+..+ ..-++|.|.++||||=|+.=+| ++|++|.=+
T Consensus 89 ~a~~~a~~~~~~-------~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 89 QAKSIADELMTG-------CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred HHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 455566555432 1358999999999999887666 456666433
No 392
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=48.50 E-value=6.3 Score=36.34 Aligned_cols=105 Identities=22% Similarity=0.231 Sum_probs=61.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh----c-CceeeeccccC------------CCCCCccccccCCCcEEEEecChhH----
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ----K-GYKVANVPIVM------------GVELPKSLFQVDPEKVFGLTINPLV---- 305 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~----~-G~KVAN~PLVp------------~v~lP~eLf~i~~~KI~GLTIdper---- 305 (386)
.-++|.|.++||||=+|+-++. . |-||.=+=+-. +.++.+. .+.+++.-++..+..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~---~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEY---EDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHH---HHTTSEEEEESSGGGST-T
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHH---hhcCCEEEEeccccccccc
Confidence 3477889999999999997653 3 66665333321 2221111 124466666655542
Q ss_pred -------HHHHHHHHHhhcCCC-----C-CCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccC
Q 016625 306 -------LQSIRKARARSLGFR-----D-EIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTG 356 (386)
Q Consensus 306 -------L~~IR~eRl~~lGl~-----~-~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~ 356 (386)
+..|++. ++.++.. + ..-..|.+....+.-+..-.+.+++. +|.+| +.+
T Consensus 97 ~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~t~llt~~ 159 (226)
T PF06745_consen 97 PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GVTTLLTSE 159 (226)
T ss_dssp SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TEEEEEEEE
T ss_pred ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CCEEEEEEc
Confidence 2444432 3333211 0 01136788888888898888888997 99888 655
No 393
>PRK00698 tmk thymidylate kinase; Validated
Probab=48.37 E-value=1.4e+02 Score=26.49 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=37.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHHhhCC-CCcEEccCccHHHHHHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQNP-VWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~-~A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
++.+|-|+.+|+.+.+ |++.-|-.+ .....+.+. .+.+. +-+.++++.. .|-+|-++.++||+...|.+++
T Consensus 128 pd~~i~l~~~~~~~~~----Rl~~R~~~~--~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i 200 (205)
T PRK00698 128 PDLTLYLDVPPEVGLA----RIRARGELD--RIEQEGLDF-FERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVI 200 (205)
T ss_pred CCEEEEEeCCHHHHHH----HHHhcCCcc--hhhhhhHHH-HHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 3568999999987654 333222110 011111111 12222 2333443331 2333445579999999999988
Q ss_pred hc
Q 016625 371 HD 372 (386)
Q Consensus 371 ~~ 372 (386)
.+
T Consensus 201 ~~ 202 (205)
T PRK00698 201 KA 202 (205)
T ss_pred HH
Confidence 64
No 394
>PRK07667 uridine kinase; Provisional
Probab=48.29 E-value=13 Score=34.02 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|-|=|.|+||||.++-.|++
T Consensus 20 IgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55668999999999999984
No 395
>PRK08116 hypothetical protein; Validated
Probab=48.18 E-value=13 Score=36.30 Aligned_cols=28 Identities=43% Similarity=0.504 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~ 276 (386)
++|.|.++||||-|+.-+|| +|+.|.=+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999998886 46655433
No 396
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=48.13 E-value=38 Score=30.41 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-||+||-+.+|||=|-..+.+.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~ 26 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTN 26 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999988777643
No 397
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=47.99 E-value=27 Score=33.17 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhCCC-----EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 016625 143 DVEQLMVIIKQAAKDGA-----MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFP 217 (386)
Q Consensus 143 t~e~l~~il~~a~~~~~-----iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ 217 (386)
+.++++++.+.....+. ++=-.++++ .+.++..++.+|+|++|+ .. +..++.......|. -.
T Consensus 16 ~~e~l~~a~~~~~~~~~~l~~~L~~~~~ls~--~~l~~~la~~~~~p~vdl-~~--------~~~~~~~~~~~~~~--~~ 82 (274)
T TIGR03029 16 SEDEAERILRLQKQENIRFGEAALRLGLINE--DDIRQALSRQFEYPYLPP-ND--------GSFSPDLIAAYQPF--SP 82 (274)
T ss_pred CHHHHHHHHHHHHhhCccHHHHHHHcCCCCH--HHHHHHHHHHhCCCCccc-cc--------cccccccccccCCC--CH
Confidence 67888877765544331 222233433 244555567778999984 21 11111110011121 12
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEE--ccCCCCCChhhHHhh----hcCceee
Q 016625 218 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILS--GVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLv--GVSRTsKTPlSiYLA----~~G~KVA 274 (386)
+.+.|..=-..+.|......+ -+|.| +-.+.|||=++..|| +.|.||.
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~---------~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGR---------KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCC---------eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 335544444445554332211 13333 467899999888877 6799995
No 398
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=47.91 E-value=42 Score=31.31 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|||||-+.+|||=|-..+.+.
T Consensus 3 IvlvGd~gVGKTSLi~~~~~~ 23 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKN 23 (202)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999776666643
No 399
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=47.69 E-value=7.3 Score=37.64 Aligned_cols=13 Identities=54% Similarity=0.843 Sum_probs=11.9
Q ss_pred EEEEccCCCCCCh
Q 016625 249 IILSGVSRTGKTP 261 (386)
Q Consensus 249 IVLvGVSRTsKTP 261 (386)
|+|+|.+|+|||=
T Consensus 2 iLLmG~~~SGKTS 14 (232)
T PF04670_consen 2 ILLMGPRRSGKTS 14 (232)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCChhh
Confidence 7999999999984
No 400
>PRK07773 replicative DNA helicase; Validated
Probab=47.51 E-value=62 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCcCc-EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHH
Q 016625 242 QNLQKAD-IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQ 307 (386)
Q Consensus 242 ~~L~~AD-IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~ 307 (386)
.||..-| |||.|-+++|||=+++=+|..+-+-.+ .+--+|.|.++++.|.
T Consensus 212 ~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~----------------~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 212 NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR----------------LAVAIFSLEMSKEQLV 262 (886)
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC----------------CeEEEEecCCCHHHHH
Confidence 5788888 566789999999999998843221111 1123677888888775
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.45 E-value=12 Score=43.07 Aligned_cols=102 Identities=21% Similarity=0.378 Sum_probs=58.6
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016625 249 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 319 (386)
Q Consensus 249 IVLvGVSRTsKTPlSi---YLA-~~G~KVAN~P-----LVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl 319 (386)
+|+-|||+|||+=|.+ |-- |+-| +-.++ +++..+- ++=++|-||.-.- .|.+.+.
T Consensus 25 ~v~TGvSGSGKSSLafDtl~aEgqRry-~es~s~y~rq~l~~~~~------P~vd~i~gl~pai----ai~Q~~~----- 88 (924)
T TIGR00630 25 VVITGLSGSGKSSLAFDTIYAEGQRRY-VESLSAYARQFLGVMDK------PDVDSIEGLSPAI----SIDQKTT----- 88 (924)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHH-HhhccHHHHHhhccCCC------CCcCeEcCCCceE----EEeccCC-----
Confidence 6899999999999874 222 3322 11222 3333332 2334455552111 1222222
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCC---CcEE---ccCccHHHHHHHHHHHH
Q 016625 320 RDEIRSNYSEMDYVREELEFAGRIFAQNPV---WPVI---VTGKAIEETAAVVLRLY 370 (386)
Q Consensus 320 ~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~---~pvI---VT~kSIEEtAa~Il~~~ 370 (386)
..+..+....+-+=-+|-+-||.+. | ||.- +...+.+++++.|+++.
T Consensus 89 ---~~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 141 (924)
T TIGR00630 89 ---SHNPRSTVGTITEIYDYLRLLFARV-GTPYCPNCGRPISSQSVSQIVDQILALP 141 (924)
T ss_pred ---CCCCCcccchHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 1233445555555567888999997 5 5543 67788999999998754
No 402
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=47.37 E-value=13 Score=31.45 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|+++|.+++|||=+.--|.+..+
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 79999999999999877775554
No 403
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=47.31 E-value=13 Score=34.27 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
|.|.|-.+||||=.|=||+++|++|-+---+
T Consensus 3 IglTG~igsGKStv~~~l~~~G~~vidaD~i 33 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVSKILAELGFPVIDADEI 33 (180)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-EEEEHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHCCCCEECccHH
Confidence 5688999999999999999999999877655
No 404
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=47.26 E-value=11 Score=37.83 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
|.|||-+.+|||-|---|.+...+|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pft 31 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFT 31 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCc
Confidence 5799999999998877777777899999996
No 405
>PRK13974 thymidylate kinase; Provisional
Probab=47.21 E-value=1e+02 Score=28.60 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=45.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA-s~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
.++.+|-|+++++.+.+-+..|- + + .+- ......+.+..+-..|.+...|-+|=.++++||+...|.+.+
T Consensus 134 ~pd~~i~ld~~~~~~~~R~~~R~------d--D-~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l 204 (212)
T PRK13974 134 SPDLTFFLEISVEESIRRRKNRK------P--D-RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETL 204 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcc------c--C-chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence 35679999999999876544442 1 1 121 122334455555555555424555534579999999999988
Q ss_pred hc
Q 016625 371 HD 372 (386)
Q Consensus 371 ~~ 372 (386)
..
T Consensus 205 ~~ 206 (212)
T PRK13974 205 LN 206 (212)
T ss_pred HH
Confidence 75
No 406
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=46.92 E-value=81 Score=27.18 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=37.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 159 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 159 ~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
-+|+.+=+.+..++.++..|...+||++...+ .-..|...+|.++
T Consensus 44 lViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~-t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 44 LVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG-NNNDLGTACGRHF 88 (108)
T ss_pred EEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC-CHHHHHHHhCCcc
Confidence 37778888999999999999999999986423 4588899999776
No 407
>PRK07933 thymidylate kinase; Validated
Probab=46.81 E-value=15 Score=34.42 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|++-|+.+||||-++--|+ .+|++|.
T Consensus 3 IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 3 IAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 7899999999999776666 5688775
No 408
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=46.79 E-value=13 Score=32.48 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=19.4
Q ss_pred EccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 252 SGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 252 vGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
=|-.++|||-++..|| ++|+||+=+=+
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred cCCCCccHHHHHHHHHhcccccccccccccc
Confidence 3457899999888766 67999974433
No 409
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=46.66 E-value=14 Score=32.90 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~ 276 (386)
|||.|..+||||=++=-||+ .|++|.-+
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999999993 38888644
No 410
>PRK13768 GTPase; Provisional
Probab=46.48 E-value=13 Score=35.75 Aligned_cols=28 Identities=39% Similarity=0.721 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhH----HhhhcCceeeec
Q 016625 249 IILSGVSRTGKTPLSI----YLAQKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSi----YLA~~G~KVAN~ 276 (386)
|++.|.+++|||=++. +|+++|.+|+=+
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 7889999999999664 555789887655
No 411
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=46.48 E-value=49 Score=33.92 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhh
Q 016625 242 QNLQKADII-LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSiYLA 267 (386)
.||..-|+| |-|.+++|||=+++.+|
T Consensus 189 ~G~~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 189 NGLVKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 366667765 46889999999999998
No 412
>PRK12338 hypothetical protein; Provisional
Probab=46.30 E-value=14 Score=37.62 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCCcEEccCccHHHHHHHHHHHHhccc
Q 016625 339 FAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 339 ~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~~r~ 374 (386)
|--+.-+++ ++|+| ++.++++|.+.|++.+.+..
T Consensus 173 ~l~~~A~e~-~VpvI-~N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 173 HLVEQAREH-NVPVI-KNDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred HHHHhHhhC-CCcee-CCCcHHHHHHHHHHHHHhhe
Confidence 434444455 77765 88999999999999987653
No 413
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=46.29 E-value=15 Score=40.15 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=49.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhh--hhhhhhhhhCCCC-CCCCCCC-----cCcEEEEccCCCCCChhhH
Q 016625 193 TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRR--IEAIEFTIKQDDG-ALPQNLQ-----KADIILSGVSRTGKTPLSI 264 (386)
Q Consensus 193 i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~R--IeAIEFAlkhDDG-~~p~~L~-----~ADIVLvGVSRTsKTPlSi 264 (386)
-+.+..++..++. .++...+-...-... |.+-++.+.|+|| ..+.++. .--++|||.|++|||-|--
T Consensus 291 ~d~i~~~l~~~~~-----~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~ 365 (559)
T COG4988 291 ADKLFTLLESPVA-----TPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLN 365 (559)
T ss_pred HHHHHHHhcCCCC-----CCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHH
Confidence 3445555555543 344333323333333 3455899999999 6666654 2347999999999998766
Q ss_pred Hhh--h---cC-ceeeeccccC
Q 016625 265 YLA--Q---KG-YKVANVPIVM 280 (386)
Q Consensus 265 YLA--~---~G-~KVAN~PLVp 280 (386)
-|+ + -| +++--+|+-.
T Consensus 366 lL~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 366 LLLGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred HHhCcCCCCCceEEECCccccc
Confidence 665 2 23 6666555543
No 414
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=46.23 E-value=37 Score=29.08 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.7
Q ss_pred eccccC-CHHHHHHHHHHHHhCC--CEEEEEc-CCHHHHHHHHHHHHHcCCCEeec
Q 016625 137 LFSGID-DVEQLMVIIKQAAKDG--AMLVYTL-ADPSMAESAKKACELWGIPSTDV 188 (386)
Q Consensus 137 ~~p~V~-t~e~l~~il~~a~~~~--~iV~~Tl-vd~elr~~l~~~~~~~~i~~vDl 188 (386)
-+.+-+ +.+.+.+.+++..+.+ ++++.+- --+++=+.+.+.|.++++|.+.+
T Consensus 50 g~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 50 GYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEI 105 (123)
T ss_pred CcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEe
Confidence 455555 5677999999887766 6888665 33577788889999999998865
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=46.22 E-value=14 Score=42.68 Aligned_cols=102 Identities=22% Similarity=0.381 Sum_probs=58.9
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016625 249 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 319 (386)
Q Consensus 249 IVLvGVSRTsKTPlSi---YLA-~~G~KVAN~P-----LVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl 319 (386)
+|+-|||+|||+=|.+ |-- |+-| +-.++ +++..+- ++-++|-||.-.- .|.+.+. +
T Consensus 29 ~v~TGvSGSGKSSLafDtl~aEgqRry-~Es~s~y~rq~l~~~~~------P~vd~i~gl~p~I----ai~Q~~~---~- 93 (943)
T PRK00349 29 VVFTGLSGSGKSSLAFDTIYAEGQRRY-VESLSAYARQFLGQMDK------PDVDSIEGLSPAI----SIDQKTT---S- 93 (943)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHH-HhhccHHHHHhhccCCC------CCcCeEcCCCceE----EEEecCC---C-
Confidence 5899999999999874 222 3322 11122 3333332 2334555552211 1233322 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCC---CcEE---ccCccHHHHHHHHHHHH
Q 016625 320 RDEIRSNYSEMDYVREELEFAGRIFAQNPV---WPVI---VTGKAIEETAAVVLRLY 370 (386)
Q Consensus 320 ~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~---~pvI---VT~kSIEEtAa~Il~~~ 370 (386)
.+..+....+-+=-+|-+-||.+. | ||.- +...+.+++++.|++..
T Consensus 94 ----~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 145 (943)
T PRK00349 94 ----HNPRSTVGTVTEIYDYLRLLYARV-GKPHCPNCGRPIEAQTVSQMVDRVLELP 145 (943)
T ss_pred ----CCCCccchhHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 234455555555567888999997 5 5543 67778999999998754
No 416
>PRK09354 recA recombinase A; Provisional
Probab=46.13 E-value=22 Score=36.56 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHH-HhhhhhhhhhhhCCCCCCCCCCCcCcEE-EEccCCCCCChhhHHh
Q 016625 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEY-FRRIEAIEFTIKQDDGALPQNLQKADII-LSGVSRTGKTPLSIYL 266 (386)
Q Consensus 189 l~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~Y-F~RIeAIEFAlkhDDG~~p~~L~~ADIV-LvGVSRTsKTPlSiYL 266 (386)
|...+..|++.+|...-- .-|.......+. =--+.+++.++-- -||..=-|+ |.|.++||||=||+.+
T Consensus 11 ~~~~~~~i~~~~g~~~~~----~~~~~~~~~~~~isTGi~~LD~~LG~------GGip~G~IteI~G~~GsGKTtLal~~ 80 (349)
T PRK09354 11 LEAALKQIEKQFGKGSIM----RLGDDAAMDVEVISTGSLALDIALGI------GGLPRGRIVEIYGPESSGKTTLALHA 80 (349)
T ss_pred HHHHHHHHHHHhCCCCce----EcccccccCCceecCCcHHHHHHhcC------CCCcCCeEEEEECCCCCCHHHHHHHH
Confidence 567889999999987632 112111111111 1124556665521 355555455 7899999999999988
Q ss_pred h
Q 016625 267 A 267 (386)
Q Consensus 267 A 267 (386)
+
T Consensus 81 ~ 81 (349)
T PRK09354 81 I 81 (349)
T ss_pred H
Confidence 7
No 417
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=46.05 E-value=12 Score=34.14 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|+|+||||=+.--|+.
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999888884
No 418
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=46.00 E-value=14 Score=33.86 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHh-h----hcCce-eeecc-cc
Q 016625 249 IILSGVSRTGKTPLSIYL-A----QKGYK-VANVP-IV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYL-A----~~G~K-VAN~P-LV 279 (386)
.++.|..|+|||=.+++. . .+|-+ ++|+| |-
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tni~gL~ 40 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTNIPGLN 40 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE--TTB-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEccCCcc
Confidence 478999999999988777 3 34655 67988 54
No 419
>PLN02318 phosphoribulokinase/uridine kinase
Probab=45.97 E-value=16 Score=40.58 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 216 ~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..+|.-||--|.|++.--++++|.-. |-|.|+|++|||=++-.|+..
T Consensus 42 ~sfd~g~~~~ira~qlL~~~~~~riI-------IGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 42 LSFEKGFFVVIRACQLLAQKNDGIIL-------VGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred cccccchhhhhHHHHHHHhcCCCeEE-------EEEECCCCCcHHHHHHHHHhh
Confidence 45678899999999998887775322 778999999999999999954
No 420
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.72 E-value=1.7e+02 Score=29.52 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=84.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.+..|.|.-+. ...++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~p~Laii~vg~~~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~ 105 (286)
T PRK14175 32 TPKLSVILVGNDGAS--QSYVRSKKKAAEKI----GMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVS 105 (286)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 445778888877644 34444444333332 35788999998789999999999886553 56665 4332 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-++.+..-.-+++ ||=|.|. +..|- .|.+. -.|- .| .||=.-++|=+. +|....
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l~--~~~~~-~~Pc-Tp--------------~ai~~ll~~~~i----~l~Gk~ 160 (286)
T PRK14175 106 EQKILEAINPEKD---VDGFHPINIGKLY--IDEQT-FVPC-TP--------------LGIMEILKHADI----DLEGKN 160 (286)
T ss_pred HHHHHhccCcccC---cccCCccchHhHh--cCCCC-CCCC-cH--------------HHHHHHHHHcCC----CCCCCE
Confidence 2223333333333 3545543 22221 23211 1111 22 233333333221 688899
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
+++||-|++-=.|++++|.++|..|-
T Consensus 161 vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 161 AVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred EEEECCCchhHHHHHHHHHHCCCeEE
Confidence 99999999555699999999997664
No 421
>PLN02924 thymidylate kinase
Probab=45.61 E-value=73 Score=30.26 Aligned_cols=74 Identities=20% Similarity=0.436 Sum_probs=43.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHh
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYH 371 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~ 371 (386)
.|+.+|-|+++|+...+ | .+. + +..|.+.+. .+-+..+-.-+... .|-+|=.++++||+...|.+.+.
T Consensus 135 ~PDlvi~Ld~~~~~a~~-R---~~~-~-----~~~~E~~~~-~~rv~~~Y~~la~~-~~~vIDa~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 135 APDLVLYLDISPEEAAE-R---GGY-G-----GERYEKLEF-QKKVAKRFQTLRDS-SWKIIDASQSIEEVEKKIREVVL 202 (220)
T ss_pred CCCEEEEEeCCHHHHHH-H---hcc-C-----ccccccHHH-HHHHHHHHHHHhhc-CEEEECCCCCHHHHHHHHHHHHH
Confidence 36789999999998876 3 211 1 123433322 12222222112233 57666346999999999999987
Q ss_pred cccccC
Q 016625 372 DRKHKC 377 (386)
Q Consensus 372 ~r~~~~ 377 (386)
....+|
T Consensus 203 ~~l~~~ 208 (220)
T PLN02924 203 DTVQRC 208 (220)
T ss_pred HHHHhc
Confidence 754443
No 422
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=45.59 E-value=1.2e+02 Score=26.76 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCC
Q 016625 106 GTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGI 183 (386)
Q Consensus 106 sTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i 183 (386)
+.+.....-.+.++.|+. +++..++.-.+.+...+.++++...+ ++|+.+.....+. ..+.+.+.++
T Consensus 12 ~~~~~~~~g~~~~~~~~g---------~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--~~~~l~~~~i 80 (264)
T cd01537 12 PFFAQVLKGIEEAAKAAG---------YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT--IVKLARKAGI 80 (264)
T ss_pred hHHHHHHHHHHHHHHHcC---------CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh--HHHHhhhcCC
Confidence 344555555666677763 34555555567777777777765444 5777665544443 3456678899
Q ss_pred CEeecch
Q 016625 184 PSTDVLG 190 (386)
Q Consensus 184 ~~vDll~ 190 (386)
|+|-+-.
T Consensus 81 p~v~~~~ 87 (264)
T cd01537 81 PVVLVDR 87 (264)
T ss_pred CEEEecc
Confidence 9987644
No 423
>PRK00698 tmk thymidylate kinase; Validated
Probab=45.59 E-value=12 Score=33.37 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|++.|+++||||=++=.|++
T Consensus 6 I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 424
>PRK05595 replicative DNA helicase; Provisional
Probab=45.56 E-value=87 Score=32.62 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=22.5
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhh
Q 016625 242 QNLQKADIIL-SGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSiYLA~ 268 (386)
.||..-|+|+ -|-++.|||=+++.+|.
T Consensus 196 ~G~~~g~liviaarpg~GKT~~al~ia~ 223 (444)
T PRK05595 196 SGFQKGDMILIAARPSMGKTTFALNIAE 223 (444)
T ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHH
Confidence 5788888876 67889999999998883
No 425
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=45.36 E-value=51 Score=33.47 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCC-------CcCcEEEE--ccCCCCCC
Q 016625 190 GPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNL-------QKADIILS--GVSRTGKT 260 (386)
Q Consensus 190 ~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L-------~~ADIVLv--GVSRTsKT 260 (386)
...|...++.-...+ |.+..|..+..+++=+++|..+=... ++..+.+ ..+-||.| +--++|||
T Consensus 47 ~~tlr~~e~~~~~~~---~~r~~~g~r~yt~~di~~l~~~~~~~----~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKT 119 (387)
T TIGR03453 47 DSYLRQLSLEGKGPE---PETLSNGRRSYTLEQINELRRHLAQR----GREARRYLPHRRGGEHLQVIAVTNFKGGSGKT 119 (387)
T ss_pred HHHHHHHHHcCCCCC---CCcCCCCceeeCHHHHHHHHHHHHhc----cccccccCCCcCCCCCceEEEEEccCCCcCHH
Confidence 455555555444322 12466667777777666666543321 3332222 23335544 34489999
Q ss_pred hhhHHhh----hcCceee
Q 016625 261 PLSIYLA----QKGYKVA 274 (386)
Q Consensus 261 PlSiYLA----~~G~KVA 274 (386)
-+|+.|| .+|+||.
T Consensus 120 T~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 120 TTAAHLAQYLALRGYRVL 137 (387)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 9988777 6799996
No 426
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=45.35 E-value=14 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
-|++||.+++|||=|...|.+.-+.
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3899999999999998888754343
No 427
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=45.02 E-value=38 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.8
Q ss_pred CCcCcEEEEccCCCCCChhhHHhh
Q 016625 244 LQKADIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSiYLA 267 (386)
...--|++||-+.+|||=+...+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~ 34 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHh
Confidence 444569999999999999988665
No 428
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=44.98 E-value=15 Score=36.17 Aligned_cols=95 Identities=12% Similarity=0.234 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016625 148 MVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 227 (386)
Q Consensus 148 ~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIe 227 (386)
.++++++. .+.+++.-+.++++.+ .|+++||+++|+++ .+.+ +. .......+ -
T Consensus 84 ~~~l~~~~-~~~~~~~G~~~~~l~~----~a~~~gi~v~~~~~--~~~v---------------a~-~n~~~~Ae----~ 136 (287)
T TIGR02853 84 PELLESTK-GHCTIYVGISNPYLEQ----LAADAGVKLIELFE--RDDV---------------AI-YNSIPTAE----G 136 (287)
T ss_pred HHHHHhcC-CCCEEEEecCCHHHHH----HHHHCCCeEEEEEe--ccce---------------EE-EccHhHHH----H
Confidence 34565554 3567888888888773 78899999999988 1111 11 01111111 1
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016625 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 228 AIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
||..++++ ...+|...-++++|--|.|+ .+...|+.+|.+|.
T Consensus 137 ai~~al~~----~~~~l~gk~v~IiG~G~iG~-avA~~L~~~G~~V~ 178 (287)
T TIGR02853 137 AIMMAIEH----TDFTIHGSNVMVLGFGRTGM-TIARTFSALGARVF 178 (287)
T ss_pred HHHHHHHh----cCCCCCCCEEEEEcChHHHH-HHHHHHHHCCCEEE
Confidence 23334433 12367778899999999995 57778888887754
No 429
>PRK03846 adenylylsulfate kinase; Provisional
Probab=44.97 E-value=12 Score=34.14 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+=|+|+|.|+||||-+.--|+.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999888885
No 430
>PF13173 AAA_14: AAA domain
Probab=44.83 E-value=13 Score=31.39 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|+-|+|||=+...+|+.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
No 431
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.76 E-value=1.5e+02 Score=29.76 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=83.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.+..|.|.-+ +...++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~p~Laii~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~ 105 (285)
T PRK14189 32 QPGLAVILVGDNPA--SQVYVRNKVKACEDN----GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHID 105 (285)
T ss_pred CCeEEEEEeCCCch--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCC
Confidence 44577788877653 445555555555443 36788899998889999999999885543 55554 4431 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..|. .|.+. -.|- .| .|+=--++|= |. +|....
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l~--~~~~~-~~Pc-Tp--------------~aii~lL~~~-~i---~l~Gk~ 160 (285)
T PRK14189 106 SHKVIEAIAPEKD---VDGFHVANAGALM--TGQPL-FRPC-TP--------------YGVMKMLESI-GI---PLRGAH 160 (285)
T ss_pred HHHHHhhcCcccC---cccCChhhhhHhh--CCCCC-CcCC-CH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 2223333333332 3545543 22221 22211 0000 12 1111111110 12 667789
Q ss_pred EEEEccCCC-CCChhhHHhhhcCceee
Q 016625 249 IILSGVSRT-GKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRT-sKTPlSiYLA~~G~KVA 274 (386)
+++||-|.+ || |++++|.++|..|.
T Consensus 161 vvViGrs~iVGk-Pla~lL~~~~atVt 186 (285)
T PRK14189 161 AVVIGRSNIVGK-PMAMLLLQAGATVT 186 (285)
T ss_pred EEEECCCCccHH-HHHHHHHHCCCEEE
Confidence 999999999 65 99999999998774
No 432
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.72 E-value=3.5e+02 Score=27.34 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=85.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-+... .++.-...+..+ +++++.+.+|--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~LaiI~vg~d~as~~--Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~ 104 (285)
T PRK14191 31 RPKLAVILVGKDPASQT--YVNMKIKACERV----GMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHID 104 (285)
T ss_pred CCeEEEEEeCCCHHHHH--HHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 44678888887765433 333333333322 35789999999999999999999986553 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++| |=|.|. +..| +.|.+. -.|- .| .|+=-=++|- |. +|....
T Consensus 105 ~~~i~~~I~p~KDV---DGl~~~n~g~l--~~g~~~-~~Pc-Tp--------------~avi~lL~~~-~i---~l~Gk~ 159 (285)
T PRK14191 105 TKMVLEAIDPNKDV---DGFHPLNIGKL--CSQLDG-FVPA-TP--------------MGVMRLLKHY-HI---EIKGKD 159 (285)
T ss_pred HHHHHhcCCccccc---cccChhhHHHH--hcCCCC-CCCC-cH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22233333333333 555554 2333 233221 0000 12 2222222221 12 666778
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||=|.+==+|++++|.++|..|
T Consensus 160 vvVvGrs~~VG~Pla~lL~~~gAtV 184 (285)
T PRK14191 160 VVIIGASNIVGKPLAMLMLNAGASV 184 (285)
T ss_pred EEEECCCchhHHHHHHHHHHCCCEE
Confidence 9999999888899999999998655
No 433
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.62 E-value=1.1e+02 Score=28.04 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=56.5
Q ss_pred ceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCC
Q 016625 132 AVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPR 209 (386)
Q Consensus 132 ~~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~ 209 (386)
.+....++.-.+.++..+.++.+...+ ++|+++..+....+.+++ +.+.|+|+|-+-.+ .
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~-~~~~~ipvv~~~~~------------~----- 92 (271)
T cd06321 31 GVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKR-AQAAGIVVVAVDVA------------A----- 92 (271)
T ss_pred CeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHH-HHHCCCeEEEecCC------------C-----
Confidence 355666666667777777777764433 688876433345666665 45678999887322 1
Q ss_pred CCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCC
Q 016625 210 GAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSR 256 (386)
Q Consensus 210 ~~pG~~~~ld-~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSR 256 (386)
++....+. ++|-.=-.|.+|.+++=.|. .+|.++|-..
T Consensus 93 --~~~~~~V~~d~~~~g~~~~~~l~~~~~g~-------~~i~~i~g~~ 131 (271)
T cd06321 93 --EGADATVTTDNVQAGEISCQYLADRLGGK-------GNVAILNGPP 131 (271)
T ss_pred --CCccceeeechHHHHHHHHHHHHHHhCCC-------ceEEEEeCCC
Confidence 01111222 44444456777777653232 4688886443
No 434
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=44.51 E-value=10 Score=32.79 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=15.0
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016625 248 DIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA 267 (386)
=++|.|.+++|||=+.-.+.
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999988555
No 435
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=44.33 E-value=64 Score=33.62 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred ccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEe
Q 016625 138 FSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPST 186 (386)
Q Consensus 138 ~p~V~t~e~l~~il~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~~i~~v 186 (386)
-|.|=|-+++.++|+.|.+++ ++--+.+.|-++.+.+-+.+++.+-|+|
T Consensus 6 ~~~~~~~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvI 55 (357)
T TIGR01520 6 KPGVITGDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPII 55 (357)
T ss_pred CCCccCHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 477889999999999998887 8889999999999999999999888876
No 436
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=44.32 E-value=1.2e+02 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=24.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCc-eeeeccccC
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGY-KVANVPIVM 280 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~-KVAN~PLVp 280 (386)
=|+|+|.|+||||=++-.|| ..|. +=-+++++.
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD 428 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLD 428 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeC
Confidence 58899999999999999999 4444 222444443
No 437
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=44.16 E-value=15 Score=37.63 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh-----hcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLA-----QKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-----~~G~KVAN~PL 278 (386)
+||.|++++|||=+.-.|+ ..|++|+=+-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcc
Confidence 5899999999999954444 47888876543
No 438
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=44.07 E-value=15 Score=32.00 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.1
Q ss_pred cCcEEEEccCCCCCChhhHHhh-hcCceeeeccccC
Q 016625 246 KADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM 280 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp 280 (386)
.-.++++|.+.+||+.+-=+|. .++.++++.|-+-
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t 135 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT 135 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc
Confidence 4669999999999999988888 5678888887554
No 439
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.02 E-value=1.1e+02 Score=30.76 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=86.4
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|--+ +...++.-..++... +++++.+.+|--.+.+++.++|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~La~I~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~ 104 (282)
T PRK14180 31 TPKLVAIIVGNDPA--SKTYVASKEKACAQV----GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHIN 104 (282)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCC
Confidence 34567777776654 445666666666543 46788999999889999999999886553 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++| |-|.|. +..|. +|..+.-.|- .| .||=.=++|- |. +|...+
T Consensus 105 ~~~i~~~I~p~KDV---DGl~~~n~g~l~--~g~~~~~~Pc-Tp--------------~aii~lL~~y-~i---~l~Gk~ 160 (282)
T PRK14180 105 KNNVIYSIKPEKDV---DGFHPTNVGRLQ--LRDKKCLESC-TP--------------KGIMTMLREY-GI---KTEGAY 160 (282)
T ss_pred HHHHHhhcCccccc---cccChhhHHHHh--cCCCCCcCCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22233333333333 445444 33332 2311100000 22 2222222221 22 466778
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+++||-|.+==-|++++|.++|..|
T Consensus 161 vvViGrS~~VGkPla~lL~~~~ATV 185 (282)
T PRK14180 161 AVVVGASNVVGKPVSQLLLNAKATV 185 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEE
Confidence 9999999999999999999998554
No 440
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=43.96 E-value=55 Score=26.42 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=34.2
Q ss_pred EEEEEcCCHHHHHH-HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAES-AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~-l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++..... +...|++++||++-+. -...|...+|...
T Consensus 35 vilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~--s~~eLG~~~g~~~ 78 (95)
T PF01248_consen 35 VILAEDCSPDSIKKHLPALCEEKNIPYVFVP--SKEELGRACGKKR 78 (95)
T ss_dssp EEEETTSSSGHHHHHHHHHHHHTTEEEEEES--HHHHHHHHTTSSS
T ss_pred EEEcCCCChhhhcccchhheeccceeEEEEC--CHHHHHHHHCCCC
Confidence 55566666666666 9999999999998876 5689999999874
No 441
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=43.94 E-value=12 Score=39.15 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=22.0
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhh
Q 016625 244 LQKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+...-|+|+|+++||||=++-.||.
T Consensus 114 ~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 114 LSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHH
Confidence 4456799999999999999999993
No 442
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=43.89 E-value=13 Score=33.73 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|||.+++|||=|+--|-.
T Consensus 4 imliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999988874
No 443
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=43.88 E-value=44 Score=36.18 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=61.7
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016625 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (386)
Q Consensus 103 VSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~ 182 (386)
|.-.+|.|-..+.+++|-|=|+ +..+--|++.|.+..+++.+ ..|-+|+.||--.+....+.+... +|
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPD----------vI~vGEiRd~eta~~a~~aa-~tGHlv~tTlHa~~a~~~i~Rl~~-lg 433 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPD----------IIMVGEIRDLETAEIAIKAA-QTGHLVLSTLHTNDAPETLARLVN-MG 433 (564)
T ss_pred eccccCCCHHHHHHHHhccCCC----------EEEeCCCCCHHHHHHHHHHH-HcCCcEEEEeccCCHHHHHHHHHH-cC
Confidence 3446689999999999999986 45778899999999988765 467789999999999999988864 67
Q ss_pred CCEeecchH
Q 016625 183 IPSTDVLGP 191 (386)
Q Consensus 183 i~~vDll~p 191 (386)
++-..+-+.
T Consensus 434 ~~~~~la~~ 442 (564)
T TIGR02538 434 IAPFNIASS 442 (564)
T ss_pred CCHHHHHHH
Confidence 765554443
No 444
>PLN02459 probable adenylate kinase
Probab=43.66 E-value=14 Score=36.45 Aligned_cols=38 Identities=13% Similarity=-0.014 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhccc
Q 016625 336 ELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 336 EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~ 374 (386)
+..-..+.|++. |.-+. =.++++||+...|.+.++...
T Consensus 215 ~t~pv~~~Y~~~-g~l~~id~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 215 ESQPVEDFYRKR-GKLLEFELPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred HhHHHHHHHHhc-CCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence 334455678886 65333 556799999999999987543
No 445
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.66 E-value=2.3e+02 Score=28.52 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=87.0
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlv-d~e 169 (386)
...+.++.|.|.-+. +..++.-......+ +++++.+.||---|.+++.+.|+++.++. +|+++ =|- .-+
T Consensus 30 ~P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~ 103 (282)
T PRK14166 30 ESCLAVILVGDNPAS--QTYVKSKAKACEEC----GIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHIC 103 (282)
T ss_pred CceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 345778888776643 44555555555443 35688888988778899999999885543 55554 443 222
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.++.-.-+++| |=|.|. +..| ++|..+.-.|- .| .|+=.=++|- |. +|...+
T Consensus 104 ~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~~~~Pc-Tp--------------~avi~lL~~y-~i---~l~Gk~ 159 (282)
T PRK14166 104 KDLILESIISSKDV---DGFHPINVGYL--NLGLESGFLPC-TP--------------LGVMKLLKAY-EI---DLEGKD 159 (282)
T ss_pred HHHHHhccCcccCc---ccCChhhhHHH--hcCCCCCCcCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 33344444434333 545543 2222 23321111000 22 2222222221 22 567789
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
+++||=|.+-=-|++++|.++|.-|.
T Consensus 160 vvVvGrS~iVGkPla~lL~~~~atVt 185 (282)
T PRK14166 160 AVIIGASNIVGRPMATMLLNAGATVS 185 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEE
Confidence 99999999999999999999886663
No 446
>PRK04213 GTP-binding protein; Provisional
Probab=43.65 E-value=15 Score=32.74 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=26.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
.-|+++|-+.+|||=+--.|.+.-+++.+.|-+
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~ 42 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV 42 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCce
Confidence 469999999999999998888655677666633
No 447
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.47 E-value=85 Score=31.60 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=87.4
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlv-d~e 169 (386)
...+.++.|.|.-+. ...++.-......+ +++++.+.+|--.+.+++.+.|+++.++. +|+++ =|- .-+
T Consensus 31 ~P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~ 104 (284)
T PRK14170 31 KPGLAVVLVGDNQAS--RTYVRNKQKRTEEA----GMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHIS 104 (284)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCC
Confidence 456788888887654 44444444444332 35788999998889999999999886554 56665 443 112
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.++.-.-+++ ||=|.|. +..|. +|.+. -.|- .| .||=-=++|= |. +|...+
T Consensus 105 ~~~i~~~I~p~KD---VDGl~p~N~g~l~--~~~~~-~~Pc-Tp--------------~avi~lL~~~-~i---~l~Gk~ 159 (284)
T PRK14170 105 EEKVIDTISYDKD---VDGFHPVNVGNLF--IGKDS-FVPC-TP--------------AGIIELIKST-GT---QIEGKR 159 (284)
T ss_pred HHHHHhccCcccC---cccCChhhhhHHh--CCCCC-CCCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 2223433333333 3555554 33332 23221 0000 22 1111111110 22 566779
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
+++||=|.+-=-||+++|.++|.-|-
T Consensus 160 vvVvGrS~iVGkPla~lL~~~~atVt 185 (284)
T PRK14170 160 AVVIGRSNIVGKPVAQLLLNENATVT 185 (284)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEE
Confidence 99999999999999999999986664
No 448
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=43.41 E-value=11 Score=34.33 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.+-++|+|+|++|||=|+-=||+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988884
No 449
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.26 E-value=2.6e+02 Score=28.38 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=83.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
...+.++.|.|.-+. ...++.-...+..+ +++++.+.+|.-.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~ 104 (293)
T PRK14185 31 RPHLAAILVGHDGGS--ETYVANKVKACEEC----GFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHIS 104 (293)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCC
Confidence 445778888776643 44555544444433 35788899999989999999999886553 56555 3321 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..|. .|. +.-.|- .| .|+=.=|+|- |. +|...+
T Consensus 105 ~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~-~~~~Pc-Tp--------------~av~~lL~~~-~i---~l~GK~ 159 (293)
T PRK14185 105 EQKVIEAIDYRKD---VDGFHPINVGRMS--IGL-PCFVSA-TP--------------NGILELLKRY-HI---ETSGKK 159 (293)
T ss_pred HHHHHhccCcccC---cCCCCHhhHHHHh--CCC-CCCCCC-CH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 1223333222332 3556654 23332 222 111000 22 1111112211 11 366678
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
+|+||=|.+==-|++++|.++||
T Consensus 160 vvViGrS~iVGkPla~lL~~~~~ 182 (293)
T PRK14185 160 CVVLGRSNIVGKPMAQLMMQKAY 182 (293)
T ss_pred EEEECCCccchHHHHHHHHcCCC
Confidence 99999999999999999999863
No 450
>CHL00176 ftsH cell division protein; Validated
Probab=42.84 E-value=13 Score=41.05 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
|+|.|.++||||=+.-+||+. +++|++.
T Consensus 219 VLL~GPpGTGKT~LAralA~e----~~~p~i~ 246 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGE----AEVPFFS 246 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHH----hCCCeee
Confidence 999999999999999999964 3556553
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=42.83 E-value=12 Score=36.80 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.6
Q ss_pred EEEEccCCCCCChhhHHh
Q 016625 249 IILSGVSRTGKTPLSIYL 266 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYL 266 (386)
++|+|+|+||||-+---|
T Consensus 31 v~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875443
No 452
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=42.80 E-value=21 Score=39.24 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=29.0
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCcee
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKV 273 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KV 273 (386)
.+|+++++.+.+ -++|.|..+||||=|..-+. +.|.+|
T Consensus 163 ~~Av~~~l~~~~----------~~lI~GpPGTGKT~t~~~ii~~~~~~g~~V 204 (637)
T TIGR00376 163 KEAVSFALSSKD----------LFLIHGPPGTGKTRTLVELIRQLVKRGLRV 204 (637)
T ss_pred HHHHHHHhcCCC----------eEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 468999887633 47899999999999887655 357654
No 453
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.68 E-value=1.2e+02 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=39.7
Q ss_pred HHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 150 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 150 il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
.++.+++.. -+++--=+|+.+-..+...|+++|||++.+ +.+..|.+..|.+
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~s~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--CCHHHHHHHhCCC
Confidence 344444333 356666788999999999999999999975 6788888888876
No 454
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=42.67 E-value=18 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
|+|+|-+.+|||-+.--|....+..
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~ 27 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAA 27 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhccccc
Confidence 7999999999999999988554443
No 455
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=42.67 E-value=11 Score=34.65 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=57.3
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccccC------------CCCCCccccccCCCcEEEEecChhH
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVM------------GVELPKSLFQVDPEKVFGLTINPLV 305 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLVp------------~v~lP~eLf~i~~~KI~GLTIdper 305 (386)
|+..-. ++|.|.+++|||=+|+++|. .|.+|..+=+-. +.++.+.+ +. +++-+..++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~---~~-~l~~~~~~~~~ 87 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYI---DK-SLYIVRLDPSD 87 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHH---hC-CeEEEecCHHH
Confidence 444444 45689999999999999883 466665553322 22221111 11 34445555533
Q ss_pred ----HHHHHHH---HHhhcCCCC---CCC----CCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 306 ----LQSIRKA---RARSLGFRD---EIR----SNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 306 ----L~~IR~e---Rl~~lGl~~---~~~----S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
+.+++.. -++..+..- ++- ..+.+....++++..--+-+++. +++++ +++.
T Consensus 88 ~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~-~~tvll~s~~ 153 (224)
T TIGR03880 88 FKTSLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRET-GVTTILTSEA 153 (224)
T ss_pred HHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcc
Confidence 2333321 112223210 000 12345555566666555556777 89999 8875
No 456
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=42.57 E-value=16 Score=37.94 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cce
Q 016625 249 IILSGVSRTGKTPLSIYLAQK-GYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~-G~K 272 (386)
|+|+|.++||||=|+--||++ |..
T Consensus 222 IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999954 654
No 457
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=42.33 E-value=2.8e+02 Score=28.89 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=87.5
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
..++.+++|.|.-.. +..++.-......+ +++++.+.||---+++++.+.|+++.++. +|+++ =|-. -+
T Consensus 86 ~P~LaiIlvGddpaS--~~Yv~~k~K~a~~~----GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid 159 (345)
T PLN02897 86 VPGLAVVLVGQQRDS--QTYVRNKIKACEET----GIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLD 159 (345)
T ss_pred CCeEEEEEeCCChHH--HHHHHHHHHHHHhc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 456788999887654 36666655555543 46788999998889999999999986554 56655 3431 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhC-CCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLG-VSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG-~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~A 247 (386)
-.+.++.-.-+++ ||=|.|. +..|. +| ..+.-.|- .| .|+=-=|+|- |. +|...
T Consensus 160 ~~~i~~~I~p~KD---VDGl~p~N~G~L~--~~~~~~~~~PC-Tp--------------~avi~LL~~~-~i---~l~GK 215 (345)
T PLN02897 160 ESKILNMVRLEKD---VDGFHPLNVGNLA--MRGREPLFVSC-TP--------------KGCVELLIRS-GV---EIAGK 215 (345)
T ss_pred HHHHHhccCcccC---ccCCCHHHHHHHh--cCCCCCCCcCC-CH--------------HHHHHHHHHh-CC---CCCCC
Confidence 2223333333333 3555554 23332 22 11110000 12 1111111211 22 46667
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
++|+||-|.+==-|++++|.++|-.|
T Consensus 216 ~vvVIGRS~iVGkPla~LL~~~~ATV 241 (345)
T PLN02897 216 NAVVIGRSNIVGLPMSLLLQRHDATV 241 (345)
T ss_pred EEEEECCCccccHHHHHHHHHCCCEE
Confidence 89999999999999999999998665
No 458
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.15 E-value=1.1e+02 Score=30.89 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=83.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlv-d~e 169 (386)
...+.++.|.|.-+. ...++.-...+..+ ++.++.+.||---+.+++.+.|+++.++. +|+++ =|- .-+
T Consensus 26 ~P~LaiI~vg~d~as--~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~ 99 (287)
T PRK14181 26 APGLAVVLIGNDPAS--EVYVGMKVKKATDL----GMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLD 99 (287)
T ss_pred CCcEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcC
Confidence 456788888877643 44444444444432 36788999998889999999999886544 56665 432 111
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..| ++|..+.-.|- .|-....|-+.| |. +|...+
T Consensus 100 ~~~i~~~I~p~KD---VDGl~p~n~g~l--~~g~~~~~~Pc-Tp~avi~lL~~~---------------~i---~l~Gk~ 155 (287)
T PRK14181 100 AQAILQAISPDKD---VDGLHPVNMGKL--LLGETDGFIPC-TPAGIIELLKYY---------------EI---PLHGRH 155 (287)
T ss_pred HHHHHhccCcccC---cccCChhhHHHH--hcCCCCCCCCC-CHHHHHHHHHHh---------------CC---CCCCCE
Confidence 2223333333332 2444443 2222 23432111111 221111111222 22 566778
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
+++||=|.+==-|++++|.++|
T Consensus 156 vvViGrS~iVGkPla~lL~~~~ 177 (287)
T PRK14181 156 VAIVGRSNIVGKPLAALLMQKH 177 (287)
T ss_pred EEEECCCccchHHHHHHHHhCc
Confidence 9999999998899999999984
No 459
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=42.15 E-value=14 Score=31.90 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEccCCCCCChhhHHhh-hcCceeeec
Q 016625 251 LSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 251 LvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|..++|||-+|-.|| .+|+..-++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 78999999999999999 567665554
No 460
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=42.08 E-value=81 Score=28.69 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=46.7
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016625 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (386)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~ 175 (386)
.+++|..+| .|. -|+.+.+.+..-.|++ ++ ..++.-=+.+.+.+++++ --+||.+.-+.+.|..+.
T Consensus 40 ~Rq~~~~~~-vg~~Ka~~~~~~l~~lnp~v------~i--~~~~~~~~~~~~~~~l~~----~DlVi~~~d~~~~r~~i~ 106 (174)
T cd01487 40 NRQQYFLSQ-IGEPKVEALKENLREINPFV------KI--EAINIKIDENNLEGLFGD----CDIVVEAFDNAETKAMLA 106 (174)
T ss_pred hcccccHhh-CCChHHHHHHHHHHHHCCCC------EE--EEEEeecChhhHHHHhcC----CCEEEECCCCHHHHHHHH
Confidence 455666554 564 3444444444444643 23 222222233455555533 249999999999999887
Q ss_pred HHHHHc-CCCEeec
Q 016625 176 KACELW-GIPSTDV 188 (386)
Q Consensus 176 ~~~~~~-~i~~vDl 188 (386)
+.|.+. ++|+|--
T Consensus 107 ~~~~~~~~ip~i~~ 120 (174)
T cd01487 107 ESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHCCCCEEEE
Confidence 777776 9999854
No 461
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=41.95 E-value=11 Score=36.40 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=16.5
Q ss_pred EEccCCCCCChhhHHhh
Q 016625 251 LSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 251 LvGVSRTsKTPlSiYLA 267 (386)
|+|.|+||||=+||-||
T Consensus 43 i~G~~gsGKTql~l~l~ 59 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLA 59 (256)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEEecccccchHHHHHH
Confidence 89999999999999998
No 462
>PRK06761 hypothetical protein; Provisional
Probab=41.73 E-value=28 Score=34.75 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|++.|+++||||-++-.|++
T Consensus 5 lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999993
No 463
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.69 E-value=19 Score=37.97 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=22.3
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeee
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN 275 (386)
-=|+|+|++++|||=|..=|| .+|++|+=
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~l 239 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF 239 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 347899999999999877666 45776663
No 464
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=41.65 E-value=16 Score=34.33 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
|+|.|.|++||+=|++=|..+|++
T Consensus 21 VLi~G~SG~GKS~lAl~Li~rGh~ 44 (171)
T PF07475_consen 21 VLITGPSGIGKSELALELIKRGHR 44 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-E
T ss_pred EEEECCCCCCHHHHHHHHHHCCCe
Confidence 789999999999999999999984
No 465
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=41.64 E-value=20 Score=33.05 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=24.3
Q ss_pred EEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016625 250 ILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (386)
Q Consensus 250 VLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp 280 (386)
=++|-|.||||=|.==|. .+|||||=|==..
T Consensus 6 ~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 6 GIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 378999999998877664 7899999664433
No 466
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=41.58 E-value=16 Score=35.74 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEEccCCCCCChhhH
Q 016625 249 IILSGVSRTGKTPLSI 264 (386)
Q Consensus 249 IVLvGVSRTsKTPlSi 264 (386)
+++.|||+||||=|..
T Consensus 24 ~~vtGvSGsGKStL~~ 39 (261)
T cd03271 24 TCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEECCCCCchHHHHH
Confidence 5899999999999875
No 467
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=41.35 E-value=17 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=21.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcC-ceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKG-YKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G-~KVAN~P 277 (386)
.|+|+|.+.+|||=+.-.|.... -++.|.|
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~ 33 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIA 33 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCC
Confidence 48999999999997777776433 2445554
No 468
>PF05729 NACHT: NACHT domain
Probab=41.32 E-value=18 Score=30.49 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
++|.|..++|||=++-+++
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6899999999999999988
No 469
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=41.16 E-value=21 Score=36.32 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=23.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|||+|+--||||=||+=|| ..|--|-|+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~ 34 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISL 34 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEec
Confidence 8999999999999999999 556655553
No 470
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.11 E-value=16 Score=36.07 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCcee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKV 273 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KV 273 (386)
-++|.|.++||||=+...+|+ .|.++
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 379999999999999999994 56543
No 471
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=40.94 E-value=20 Score=34.11 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=15.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+++.|+.+||||=|++..|
T Consensus 22 v~~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAA 40 (205)
T ss_dssp EEEE--TTSSTTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7889999999999999988
No 472
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.85 E-value=2e+02 Score=25.47 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCChhhHHhhhcCceeeeccc-cCCCCCCccccccCCCcEEEEecC----hhHHHHHHHHHHhhcCCCCC----CCC---
Q 016625 258 GKTPLSIYLAQKGYKVANVPI-VMGVELPKSLFQVDPEKVFGLTIN----PLVLQSIRKARARSLGFRDE----IRS--- 325 (386)
Q Consensus 258 sKTPlSiYLA~~G~KVAN~PL-Vp~v~lP~eLf~i~~~KI~GLTId----perL~~IR~eRl~~lGl~~~----~~S--- 325 (386)
||-=.+++|.++||+|-++-. +|.-++.+..-+ .+-.++||..- ...+.++. ++++..|+.+- .++
T Consensus 19 G~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~-~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 19 GNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLR-EKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHH-HHHHhcCCCCCeEEEECCCCC
Confidence 344467888899999998754 332333333323 34558888652 22223322 33444444210 011
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 326 NYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 326 ~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
.=.+.+.+++ -++++ |+-.| ..+..+||++..|.+.++.|
T Consensus 97 ~~~~~~~~~~-------~l~~~-G~~~vf~~~~~~~~i~~~l~~~~~~~ 137 (137)
T PRK02261 97 GKHDFEEVEK-------KFKEM-GFDRVFPPGTDPEEAIDDLKKDLNQR 137 (137)
T ss_pred CccChHHHHH-------HHHHc-CCCEEECcCCCHHHHHHHHHHHhccC
Confidence 1112223333 35666 88888 88999999999998877654
No 473
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.70 E-value=49 Score=32.23 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHH--HHHHHHhCCCC------CCCCCCCCCCCCC
Q 016625 148 MVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPIT--EAIASHLGVSP------SGLPRGAPGRNFP 217 (386)
Q Consensus 148 ~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i--~~le~~lG~~p------~~~~~~~pG~~~~ 217 (386)
++.++++++.| +++++=+...+.- .+.+.|+++|+..+=++.|.. +.+...+.... +. .+..|....
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~-~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~--~G~TG~~~~ 181 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESG-DLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR--AGVTGARNR 181 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHH-HHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC--CCCCCCccc
Confidence 34455555544 5777766665554 455678899998888888855 35555555554 11 123443222
Q ss_pred Cc---HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEc
Q 016625 218 LS---EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSG 253 (386)
Q Consensus 218 ld---~~YF~RIeAI-EFAlkhDDG~~-p~~L~~-----ADIVLvG 253 (386)
+. .++.+++... +=-|..|=|.+ +++..+ ||.|+||
T Consensus 182 ~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 182 AASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred CChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33 5677777642 11234455665 555443 8999998
No 474
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=40.54 E-value=2.3e+02 Score=25.44 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEe-ecchHH--HHHHHHHhCCCCCCC---CCCCCCCC-CCCcHH
Q 016625 151 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPST-DVLGPI--TEAIASHLGVSPSGL---PRGAPGRN-FPLSEE 221 (386)
Q Consensus 151 l~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~v-Dll~p~--i~~le~~lG~~p~~~---~~~~pG~~-~~ld~~ 221 (386)
++.+.+-| .++++....++.-+.+.+.|+++|++++ ++++|. .+.+. .+....... |...++.. .....+
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPED 148 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHH
Confidence 34444444 4888887776555566677888888775 345443 23322 222121110 11112211 122234
Q ss_pred HHhhhhh-hhhhhhCCCCCCCCCCCc-----CcEEEEcc
Q 016625 222 YFRRIEA-IEFTIKQDDGALPQNLQK-----ADIILSGV 254 (386)
Q Consensus 222 YF~RIeA-IEFAlkhDDG~~p~~L~~-----ADIVLvGV 254 (386)
+.+++.. .+.=+--|-|.+++++.+ ||.|++|=
T Consensus 149 ~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 149 DLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEee
Confidence 4444433 223355567888777643 78888883
No 475
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=40.52 E-value=27 Score=35.34 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLV 279 (386)
|+|||-+.+|||=|--.|.+ +.-.|.++|=+
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~ 33 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGV 33 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecCCCCc
Confidence 78999999999999888884 44456676644
No 476
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=21 Score=36.74 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
+++.|.++||||=++-|++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~ 64 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVME 64 (366)
T ss_pred EEEECCCCCCHhHHHHHHHH
Confidence 99999999999999999993
No 477
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=40.40 E-value=51 Score=31.85 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=50.8
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHH-HHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQL-MVIIKQAAKDGAMLVYTLADPSMAESA 174 (386)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l-~~il~~a~~~~~iV~~Tlvd~elr~~l 174 (386)
.+++++=.+..|.. |+.+++.+....|++ ++..+ .-.|.+.+.. .+.+ ++--+|+.++-+.+.|.++
T Consensus 40 nRQflf~~~dvGk~Ka~va~~~l~~~np~v------~i~~~-~~~i~~~~~~~~~f~----~~~DvVi~a~Dn~~aR~~l 108 (234)
T cd01484 40 NRQFLFRPKDIGRPKSEVAAEAVNDRNPNC------KVVPY-QNKVGPEQDFNDTFF----EQFHIIVNALDNIIARRYV 108 (234)
T ss_pred ccccCCChhhCChHHHHHHHHHHHHHCCCC------EEEEE-eccCChhhhchHHHH----hCCCEEEECCCCHHHHHHH
Confidence 46666655666754 555555555555653 23221 1234332221 1222 2235999999999999999
Q ss_pred HHHHHHcCCCEeec
Q 016625 175 KKACELWGIPSTDV 188 (386)
Q Consensus 175 ~~~~~~~~i~~vDl 188 (386)
.+.|.++++|+||.
T Consensus 109 n~~c~~~~iplI~~ 122 (234)
T cd01484 109 NGMLIFLIVPLIES 122 (234)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999994
No 478
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.12 E-value=1.1e+02 Score=34.21 Aligned_cols=127 Identities=21% Similarity=0.247 Sum_probs=70.0
Q ss_pred HHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec--cccCCCCCCccccccCCCcEE
Q 016625 221 EYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV--PIVMGVELPKSLFQVDPEKVF 297 (386)
Q Consensus 221 ~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~--PLVp~v~lP~eLf~i~~~KI~ 297 (386)
-.=++|++|+=.+++=+--. .++..-=..|-|+|+||||-|-=-|+ -.||++--. |+ ...-|..+-. --.
T Consensus 86 VHkkKI~eVk~WL~~~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi--~~~~~~~~h~----~t~ 158 (634)
T KOG1970|consen 86 VHKKKISEVKQWLKQVAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPI--NLKEPENLHN----ETS 158 (634)
T ss_pred hhHHhHHHHHHHHHHHHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCc--cccccccccc----cch
Confidence 35578888888887333222 23433335667999999999999999 789987532 22 2344444422 234
Q ss_pred EEe-cChhHHHH-----HHHHHHhhcCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE--cc
Q 016625 298 GLT-INPLVLQS-----IRKARARSLGFR--------------DEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI--VT 355 (386)
Q Consensus 298 GLT-IdperL~~-----IR~eRl~~lGl~--------------~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI--VT 355 (386)
||+ -.-..|.. .|..+..+|... +=++-.|.+...-.+|+-. +|-+++.||+| +|
T Consensus 159 ~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~---~y~s~g~~PlIf~iT 235 (634)
T KOG1970|consen 159 FLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR---LYVSIGRCPLIFIIT 235 (634)
T ss_pred hcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH---HHHhcCCCcEEEEEe
Confidence 454 22222322 122111222111 1145578865455555544 56666688988 66
Q ss_pred Cc
Q 016625 356 GK 357 (386)
Q Consensus 356 ~k 357 (386)
+-
T Consensus 236 d~ 237 (634)
T KOG1970|consen 236 DS 237 (634)
T ss_pred cc
Confidence 53
No 479
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.10 E-value=57 Score=33.20 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=49.1
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHHh
Q 016625 249 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR 315 (386)
Q Consensus 249 IVLvGVSRTsKTPlS----iYLA~~G~KVAN~PLVp--------~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~ 315 (386)
+...|=.+.|||=+| .|||..|.||.=+=.=| +.+++....++. +-+.|+-|||+.+.+=..+.++
T Consensus 5 v~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~-~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 5 VFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG-PNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC-CCCceeeecHHHHHHHHHHHHH
Confidence 456799999998754 89999998865443223 456677777776 4578999999998886666665
No 480
>PRK10536 hypothetical protein; Provisional
Probab=40.03 E-value=17 Score=36.21 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=18.2
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=++++|..+||||=|+..+|.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367779999999999999884
No 481
>PHA00729 NTP-binding motif containing protein
Probab=40.00 E-value=15 Score=35.57 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=55.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHH-HHHHHHhh-----cCCC
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQS-IRKARARS-----LGFR 320 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~-G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~-IR~eRl~~-----lGl~ 320 (386)
.|+|.|.++||||=+++=||+. |.+. .+|. .+..-+ ++. .-++.+|.+.|.+ |+..+-.. +-++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l--~~l~----~~~~~~--d~~-~~~~fid~~~Ll~~L~~a~~~~~~~dlLIID 89 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKL--NNLS----TKDDAW--QYV-QNSYFFELPDALEKIQDAIDNDYRIPLIIFD 89 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhc--cccc----chhhHH--hcC-CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5999999999999999999965 4111 1222 112222 232 2567788877665 54333210 0111
Q ss_pred C--CCCCCCC---CHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHH
Q 016625 321 D--EIRSNYS---EMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLR 368 (386)
Q Consensus 321 ~--~~~S~YA---s~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~ 368 (386)
+ --.+.|. +.-.+..+|-.| ++- .|-++ ++..+.|++...+-+
T Consensus 90 d~G~~~~~~~wh~~~~~~yf~L~~a---LrS--R~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 90 DAGIWLSKYVWYEDYMKTFYKIYAL---IRT--RVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CCchhhcccchhhhccchHHHHHHH---HHh--hCcEEEEecCCHHHHHHHHHh
Confidence 0 0112221 111222223222 221 36677 888899988876654
No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=39.66 E-value=13 Score=36.00 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhCCCCcEE--ccCccHHHHHHHHHHHHhcc
Q 016625 334 REELEFAGRIFAQNPVWPVI--VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 334 ~~EL~~A~~lf~k~~~~pvI--VT~kSIEEtAa~Il~~~~~r 373 (386)
++=+.-||.++.+ |.+-+- =|.--=.+++..|++++.+.
T Consensus 148 qQRVAIARAL~~~-P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 148 QQRVAIARALINN-PKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHHHHHHHHhcC-CCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 3456778888776 543222 46666678888888888664
No 483
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.66 E-value=44 Score=34.43 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccccCCCCCCcccc------ccCCCcEEE-EecChhHHHH-H
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVMGVELPKSLF------QVDPEKVFG-LTINPLVLQS-I 309 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PLVp~v~lP~eLf------~i~~~KI~G-LTIdperL~~-I 309 (386)
|+..-. ++|.|.+++|||=+++.+|. .|.||.-+-.- +-+..+. ..+.++++= ...+.+.|.+ |
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E---Es~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE---ESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC---cCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 344433 46689999999999998873 45566544321 1222221 122222221 1122233222 3
Q ss_pred HHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccC
Q 016625 310 RKARARSLGFRD-------EIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTG 356 (386)
Q Consensus 310 R~eRl~~lGl~~-------~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~ 356 (386)
++.+.+-+=+++ ..++..-+..++++-+..-.++.+++ ++++| |.+
T Consensus 155 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~-~itvilvgh 208 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER-NIPIFIVGH 208 (372)
T ss_pred HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEee
Confidence 222221111110 00122334677888777778888898 99998 744
No 484
>CHL00181 cbbX CbbX; Provisional
Probab=39.64 E-value=16 Score=35.95 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.++||||-+.-.||+
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 485
>CHL00095 clpC Clp protease ATP binding subunit
Probab=39.59 E-value=13 Score=41.69 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=22.1
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+--+||+|.++||||=+.-.||++
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999976
No 486
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=39.49 E-value=1.3e+02 Score=30.82 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=53.5
Q ss_pred EEEEEeCC-hHH-HHHHHHHHHHccCCCCccCCccceeEEe--ccc-------------cCCHHHHHHHHHHHHhCCCEE
Q 016625 99 SIYMVSDG-TGW-TAEHAVNAALGQFEHCLVDRNCAVNTHL--FSG-------------IDDVEQLMVIIKQAAKDGAML 161 (386)
Q Consensus 99 ~IfiVSDs-TGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~--~p~-------------V~t~e~l~~il~~a~~~~~iV 161 (386)
.+|-.+|. .|. -|+.+++.+..-+|++ +++.+. .|+ ..+.+.+.+++++. -+|
T Consensus 43 ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v------~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~----DvV 112 (307)
T cd01486 43 SLFTFEDCKGGKPKAEAAAERLKEIFPSI------DATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDH----DVI 112 (307)
T ss_pred cccccchhhcCccHHHHHHHHHHHHCCCc------EEEEeeeeccccccccccccccccccCHHHHHHHHhhC----CEE
Confidence 34556662 453 4666666677777874 233332 221 23555666665443 488
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016625 162 VYTLADPSMAESAKKACELWGIPSTDVL 189 (386)
Q Consensus 162 ~~Tlvd~elr~~l~~~~~~~~i~~vDll 189 (386)
|-.+-+.+-|-.+...|..+++++++..
T Consensus 113 ~d~tDn~esR~L~~~~~~~~~k~~I~aa 140 (307)
T cd01486 113 FLLTDSRESRWLPTLLSAAKNKLVINAA 140 (307)
T ss_pred EECCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 8888999999999999999999999853
No 487
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=39.47 E-value=72 Score=32.71 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=20.7
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhh
Q 016625 242 QNLQKADII-LSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSiYLA~ 268 (386)
.||..-+++ |.|.+++|||=+++-+|.
T Consensus 190 ~G~~~G~l~vi~g~pg~GKT~~~l~~a~ 217 (434)
T TIGR00665 190 SGLQPSDLIILAARPSMGKTAFALNIAE 217 (434)
T ss_pred CCCCCCeEEEEEeCCCCChHHHHHHHHH
Confidence 356666654 568899999999998873
No 488
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=39.45 E-value=23 Score=31.40 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=33.3
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeeeccccC-CCCCCccccccCCCcEEEEec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ--KGYKVANVPIVM-GVELPKSLFQVDPEKVFGLTI 301 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~--~G~KVAN~PLVp-~v~lP~eLf~i~~~KI~GLTI 301 (386)
++|+|-+++|||=+.-.|.+ +|+|++-+.=-- ++.+-..+..-....++-|.-
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~ 58 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNN 58 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCC
Confidence 68999999999999998873 477775532222 233444444333345666653
No 489
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=39.38 E-value=19 Score=36.64 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhhhc------Cceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK------GYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~------G~KVAN~P 277 (386)
++|.|.++||||=|...+|+. |.+|.-++
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 789999999999999988853 55555443
No 490
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.37 E-value=20 Score=34.82 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=25.9
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
...-++|.|.++||||=|+.=+|| +|++|.=+++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 446799999999999999887774 5666655444
No 491
>PRK07933 thymidylate kinase; Validated
Probab=39.37 E-value=1.7e+02 Score=27.32 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=39.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC----HHHHHHHHHHHHHHHhhC-C-CCcEEccCccHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE----MDYVREELEFAGRIFAQN-P-VWPVIVTGKAIEETAAV 365 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs----~e~I~~EL~~A~~lf~k~-~-~~pvIVT~kSIEEtAa~ 365 (386)
.|+.+|-|+++|+...+-.++|-..-+ .. ....|-. .++|++.- .+++++. + .|-+|=..+++||+...
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~-~~-~~d~~E~~~~f~~~v~~~Y---~~~~~~~~~~~~~~ida~~~~e~v~~~ 206 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDA-DR-ARDAYERDDGLQQRTGAVY---AELAAQGWGGPWLVVDPDVDPAALAAR 206 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccC-Cc-ccccccccHHHHHHHHHHH---HHHHHhcCCCCeEEeCCCCCHHHHHHH
Confidence 367899999999998764444521100 00 0112222 12333321 2222321 1 45555347999999999
Q ss_pred HHHHH
Q 016625 366 VLRLY 370 (386)
Q Consensus 366 Il~~~ 370 (386)
|.+.+
T Consensus 207 i~~~~ 211 (213)
T PRK07933 207 LAAAL 211 (213)
T ss_pred HHHHh
Confidence 98765
No 492
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=39.25 E-value=21 Score=34.03 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|.+.|=-++|||=+|.-|| ++|+||.=+
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5677999999999888776 789998643
No 493
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.18 E-value=76 Score=32.19 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=84.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~-Tlvd-~e 169 (386)
..++.+..|.|.-.. ...++.-...++.+ +++++.+.||---|++++.+.|+++.++. +|+++ =|-. -+
T Consensus 33 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~ 106 (301)
T PRK14194 33 EPALAVILVGNDPAS--QVYVRNKILRAEEA----GIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHID 106 (301)
T ss_pred CCeEEEEEeCCChhH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCC
Confidence 445777888776543 34444433333332 35788889998889999999999886554 56654 4421 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 170 lr~~l~~~~~~~~i~~vDll~p~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
-.+.+..-.-+++ ||=|.|. +..|. .|.+. -.|- .| .||=--++|- |. +|...+
T Consensus 107 ~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~~~-~~Pc-Tp--------------~aii~lL~~~-~i---~l~Gk~ 161 (301)
T PRK14194 107 EARVLQAINPLKD---VDGFHSENVGGLS--QGRDV-LTPC-TP--------------SGCLRLLEDT-CG---DLTGKH 161 (301)
T ss_pred HHHHHhccCchhc---cCccChhhhhHHh--cCCCC-CCCC-cH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 1222332222332 3555554 22221 23221 0000 22 1111111211 32 667778
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~ 276 (386)
|++||-|..==.|++++|.++|+.|.=+
T Consensus 162 V~vIG~s~ivG~PmA~~L~~~gatVtv~ 189 (301)
T PRK14194 162 AVVIGRSNIVGKPMAALLLQAHCSVTVV 189 (301)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 9999999777779999999999877543
No 494
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=39.18 E-value=62 Score=36.95 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
+=++++|+++||||-++--||.
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999988883
No 495
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=39.00 E-value=1e+02 Score=31.30 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016625 143 DVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTD 187 (386)
Q Consensus 143 t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~~vD 187 (386)
+.+.+.++++. --+|+.+.-|.+.|..+.+.|.++++|+|-
T Consensus 106 ~~~~~~~~~~~----~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 106 TAEELEELVTG----VDLIIDATDNFETRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred CHHHHHHHHcC----CCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 45556665533 259999999999999999999999999885
No 496
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.67 E-value=18 Score=37.55 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|.|+++||||-+.-.+|+.
T Consensus 182 vLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999954
No 497
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=38.61 E-value=22 Score=30.60 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
|++||-+.+|||=|.-.|.+..+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~ 25 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999877764433
No 498
>PRK13975 thymidylate kinase; Provisional
Probab=38.56 E-value=18 Score=32.33 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
|++.|+.++|||=++--||. .+.
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 89999999999999999994 453
No 499
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=38.51 E-value=24 Score=32.86 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=25.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
|.|.|-+++|||=++=+|+..|+.+-+---
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~ 31 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADR 31 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecch
Confidence 679999999999999999999988766543
No 500
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=38.43 E-value=62 Score=34.81 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 016625 140 GIDDVEQLMVIIKQAAKDGAMLV-YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPL 218 (386)
Q Consensus 140 ~V~t~e~l~~il~~a~~~~~iV~-~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~l 218 (386)
.|.+.+.+.+.| ..|++|= .-+.+..+.+.+.+.- ..-..|.+.|+..- +.|
T Consensus 122 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~w~------------~~~~~~~~~~~~~~-----------~~L 174 (460)
T PLN03046 122 LVSSVQDLYEFI----CSGPLVDKIGYTPEKIAQSIDKWL------------LYGSQLCRLFQLNE-----------LKL 174 (460)
T ss_pred ccccHHHHHHHH----hcCccchhccCCHHHHHHHHHHHH------------HHHHHHHHHhcccc-----------ccC
Confidence 356666666654 4566554 3345555665554432 24456777777664 567
Q ss_pred cHHHHhhhhhhhh-------------hhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 219 SEEYFRRIEAIEF-------------TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 219 d~~YF~RIeAIEF-------------AlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
++.|-.|+...=. .-++-+|...+-+- |-|.|.|+||||=++-.|. ..|++++-|.+
T Consensus 175 ~~~~~~~~~~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlI---IGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISi 248 (460)
T PLN03046 175 TEPQKARIYHYYIPVFIWCEDQIAEHRSKFKDGDDIPPLV---IGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSI 248 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEE---EEEECCCCCCHHHHHHHHHHHhcccCCceEEEEE
Confidence 7788777773211 11222333333232 5589999999999998886 24777877743
Done!