Query 016625
Match_columns 386
No_of_seqs 137 out of 615
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kb2_A SPBC2 prophage-derived 97.3 0.0014 4.9E-08 54.5 10.2 114 249-375 4-169 (173)
2 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 56.6 3.9 117 249-373 8-175 (185)
3 3t61_A Gluconokinase; PSI-biol 96.6 0.0026 9E-08 55.3 5.6 115 249-374 21-181 (202)
4 4e22_A Cytidylate kinase; P-lo 96.5 0.014 4.8E-07 53.4 10.2 75 293-374 163-246 (252)
5 3ake_A Cytidylate kinase; CMP 96.4 0.012 4E-07 50.6 8.8 67 293-371 136-207 (208)
6 2h92_A Cytidylate kinase; ross 96.3 0.027 9.4E-07 49.2 10.6 73 294-374 137-219 (219)
7 2z0h_A DTMP kinase, thymidylat 96.3 0.013 4.3E-07 50.0 8.2 70 292-373 121-192 (197)
8 3lw7_A Adenylate kinase relate 96.3 0.0067 2.3E-07 49.8 6.0 114 249-372 4-176 (179)
9 1via_A Shikimate kinase; struc 96.2 0.0085 2.9E-07 50.9 6.6 119 248-373 6-167 (175)
10 3vaa_A Shikimate kinase, SK; s 96.1 0.015 5.3E-07 50.7 7.8 121 248-373 27-196 (199)
11 1tev_A UMP-CMP kinase; ploop, 96.0 0.025 8.4E-07 47.8 8.4 74 293-372 114-194 (196)
12 3iij_A Coilin-interacting nucl 95.9 0.011 3.7E-07 50.4 5.8 115 248-373 13-174 (180)
13 1kht_A Adenylate kinase; phosp 95.8 0.016 5.4E-07 48.9 6.5 27 249-275 6-38 (192)
14 2c95_A Adenylate kinase 1; tra 95.7 0.073 2.5E-06 45.2 10.0 116 249-373 12-194 (196)
15 2cdn_A Adenylate kinase; phosp 95.3 0.21 7.1E-06 43.2 11.9 42 235-276 9-51 (201)
16 2jaq_A Deoxyguanosine kinase; 95.3 0.045 1.5E-06 46.6 7.4 28 249-276 3-31 (205)
17 1q3t_A Cytidylate kinase; nucl 95.2 0.14 4.8E-06 45.8 10.8 70 294-372 154-234 (236)
18 1kag_A SKI, shikimate kinase I 95.2 0.022 7.5E-07 47.8 5.1 42 330-372 130-172 (173)
19 4eun_A Thermoresistant glucoki 95.1 0.029 9.8E-07 49.0 5.7 68 295-373 127-194 (200)
20 3tr0_A Guanylate kinase, GMP k 94.9 0.18 6E-06 43.2 10.1 43 330-373 144-187 (205)
21 1knq_A Gluconate kinase; ALFA/ 94.9 0.054 1.9E-06 45.6 6.8 26 249-274 11-37 (175)
22 3dl0_A Adenylate kinase; phosp 94.8 0.087 3E-06 46.0 8.0 28 249-276 3-31 (216)
23 1qf9_A UMP/CMP kinase, protein 94.8 0.15 5.2E-06 42.7 9.2 28 249-276 9-37 (194)
24 3nwj_A ATSK2; P loop, shikimat 94.8 0.029 9.8E-07 52.4 5.1 125 248-373 50-237 (250)
25 1cke_A CK, MSSA, protein (cyti 94.8 0.13 4.6E-06 44.8 9.2 73 293-373 141-223 (227)
26 3tlx_A Adenylate kinase 2; str 94.7 0.11 3.6E-06 47.3 8.7 26 249-274 32-58 (243)
27 1y63_A LMAJ004144AAA protein; 94.7 0.073 2.5E-06 45.9 7.2 27 249-275 13-41 (184)
28 3fb4_A Adenylate kinase; psych 94.5 0.19 6.5E-06 43.7 9.4 28 249-276 3-31 (216)
29 1zuh_A Shikimate kinase; alpha 94.5 0.11 3.6E-06 43.7 7.5 115 248-370 9-167 (168)
30 2if2_A Dephospho-COA kinase; a 94.4 0.11 3.6E-06 44.9 7.5 27 249-275 4-30 (204)
31 1vht_A Dephospho-COA kinase; s 94.3 0.082 2.8E-06 46.3 6.6 27 249-275 7-33 (218)
32 1ukz_A Uridylate kinase; trans 94.3 0.59 2E-05 40.1 11.9 73 293-372 121-201 (203)
33 3be4_A Adenylate kinase; malar 94.0 0.26 8.8E-06 43.5 9.3 28 249-276 8-36 (217)
34 1nks_A Adenylate kinase; therm 94.0 0.32 1.1E-05 40.7 9.4 20 249-268 4-23 (194)
35 1ak2_A Adenylate kinase isoenz 94.0 0.3 1E-05 43.6 9.7 29 248-276 18-47 (233)
36 3cm0_A Adenylate kinase; ATP-b 93.7 0.42 1.4E-05 40.3 9.8 27 249-275 7-34 (186)
37 2iyv_A Shikimate kinase, SK; t 93.7 0.058 2E-06 45.8 4.4 116 249-373 5-169 (184)
38 2bwj_A Adenylate kinase 5; pho 93.6 0.23 7.8E-06 42.2 8.0 27 249-275 15-42 (199)
39 2f6r_A COA synthase, bifunctio 93.5 0.19 6.6E-06 46.9 8.0 27 249-275 78-104 (281)
40 1jjv_A Dephospho-COA kinase; P 93.3 0.37 1.3E-05 41.6 9.0 26 249-274 5-30 (206)
41 3uie_A Adenylyl-sulfate kinase 93.2 0.098 3.3E-06 45.6 5.1 24 350-373 170-195 (200)
42 2qor_A Guanylate kinase; phosp 92.6 0.81 2.8E-05 39.8 10.1 42 329-373 151-197 (204)
43 2qt1_A Nicotinamide riboside k 92.6 1.6 5.6E-05 37.6 12.0 25 249-273 24-50 (207)
44 1nn5_A Similar to deoxythymidy 92.3 0.49 1.7E-05 40.6 8.2 25 249-273 12-40 (215)
45 4ehx_A Tetraacyldisaccharide 4 92.2 0.052 1.8E-06 52.6 2.1 27 247-273 36-67 (315)
46 3r20_A Cytidylate kinase; stru 92.0 0.96 3.3E-05 41.9 10.4 70 297-373 150-228 (233)
47 3tau_A Guanylate kinase, GMP k 91.8 1.1 3.7E-05 39.4 10.0 81 293-374 98-190 (208)
48 4eaq_A DTMP kinase, thymidylat 91.2 0.54 1.8E-05 42.6 7.6 75 292-373 148-225 (229)
49 3a00_A Guanylate kinase, GMP k 90.7 0.17 5.8E-06 43.6 3.6 19 249-267 4-22 (186)
50 3ney_A 55 kDa erythrocyte memb 90.3 0.66 2.2E-05 42.0 7.2 80 292-373 108-190 (197)
51 3zvl_A Bifunctional polynucleo 88.5 1 3.5E-05 44.4 7.7 124 147-274 92-287 (416)
52 1ex7_A Guanylate kinase; subst 88.0 5 0.00017 35.7 11.3 72 293-372 91-184 (186)
53 3lnc_A Guanylate kinase, GMP k 87.6 0.24 8.3E-06 43.9 2.3 44 330-374 166-210 (231)
54 2qmh_A HPR kinase/phosphorylas 86.9 0.36 1.2E-05 44.8 3.1 27 249-275 37-63 (205)
55 3a8t_A Adenylate isopentenyltr 86.8 0.97 3.3E-05 44.6 6.3 83 249-354 43-136 (339)
56 1uf9_A TT1252 protein; P-loop, 85.5 0.36 1.2E-05 41.1 2.2 26 249-274 11-36 (203)
57 3foz_A TRNA delta(2)-isopenten 85.4 0.86 3E-05 44.6 5.1 89 249-354 13-105 (316)
58 3eph_A TRNA isopentenyltransfe 85.0 1.2 4E-05 45.1 6.0 83 249-354 5-97 (409)
59 2v54_A DTMP kinase, thymidylat 84.1 0.36 1.2E-05 41.2 1.6 26 249-274 7-34 (204)
60 3crm_A TRNA delta(2)-isopenten 84.1 1.1 3.6E-05 43.8 5.1 90 249-354 8-100 (323)
61 1xjc_A MOBB protein homolog; s 83.1 0.48 1.6E-05 42.0 2.0 32 249-280 7-42 (169)
62 1lnz_A SPO0B-associated GTP-bi 82.4 1.2 4.1E-05 43.3 4.7 35 246-280 158-192 (342)
63 1e6c_A Shikimate kinase; phosp 81.8 0.59 2E-05 38.8 2.0 26 249-274 5-31 (173)
64 2ze6_A Isopentenyl transferase 81.7 0.54 1.9E-05 43.0 1.9 28 249-276 4-32 (253)
65 2rhm_A Putative kinase; P-loop 81.7 0.56 1.9E-05 39.5 1.9 27 249-275 8-35 (193)
66 2vli_A Antibiotic resistance p 80.9 0.82 2.8E-05 38.3 2.6 26 249-274 8-34 (183)
67 1qhx_A CPT, protein (chloramph 80.9 0.71 2.4E-05 38.6 2.2 24 249-272 6-30 (178)
68 2pt5_A Shikimate kinase, SK; a 80.8 0.66 2.2E-05 38.4 1.9 27 249-275 3-30 (168)
69 1ly1_A Polynucleotide kinase; 80.6 0.67 2.3E-05 38.4 1.9 27 249-275 5-33 (181)
70 3hjn_A DTMP kinase, thymidylat 80.3 7.3 0.00025 34.4 8.7 71 292-373 121-192 (197)
71 2pbr_A DTMP kinase, thymidylat 79.0 0.79 2.7E-05 38.4 1.9 27 249-275 3-33 (195)
72 2pez_A Bifunctional 3'-phospho 78.3 0.86 2.9E-05 38.5 1.9 26 249-274 8-37 (179)
73 3fdi_A Uncharacterized protein 77.9 4.6 0.00016 35.8 6.6 72 294-374 118-200 (201)
74 3hp4_A GDSL-esterase; psychrot 77.9 3.3 0.00011 34.2 5.4 47 144-190 89-145 (185)
75 1k7c_A Rhamnogalacturonan acet 77.4 4.7 0.00016 35.8 6.6 55 144-198 111-179 (233)
76 3p94_A GDSL-like lipase; serin 77.4 4.7 0.00016 33.7 6.3 49 144-192 100-165 (204)
77 1zd8_A GTP:AMP phosphotransfer 77.4 1 3.5E-05 39.7 2.2 27 249-275 10-37 (227)
78 3mil_A Isoamyl acetate-hydroly 76.4 6.9 0.00024 33.4 7.1 53 144-196 99-177 (240)
79 1zak_A Adenylate kinase; ATP:A 76.0 0.95 3.2E-05 39.7 1.6 27 249-275 8-35 (222)
80 3dz8_A RAS-related protein RAB 75.7 3.3 0.00011 34.7 4.8 28 248-275 25-52 (191)
81 1aky_A Adenylate kinase; ATP:A 75.7 1.1 3.9E-05 39.1 2.0 28 249-276 7-35 (220)
82 4hf7_A Putative acylhydrolase; 75.6 6.5 0.00022 33.9 6.9 49 145-193 105-171 (209)
83 3exa_A TRNA delta(2)-isopenten 75.6 1.1 3.9E-05 43.9 2.2 23 249-271 6-29 (322)
84 1e4v_A Adenylate kinase; trans 75.6 1.1 3.7E-05 39.2 1.8 28 249-276 3-31 (214)
85 1ivn_A Thioesterase I; hydrola 75.4 8.5 0.00029 32.1 7.4 48 144-191 85-142 (190)
86 3lv8_A DTMP kinase, thymidylat 74.3 11 0.00037 34.7 8.3 75 292-374 154-230 (236)
87 3h8v_A Ubiquitin-like modifier 74.2 14 0.00047 35.4 9.3 79 102-188 81-168 (292)
88 2xb4_A Adenylate kinase; ATP-b 73.8 1.4 4.6E-05 39.2 2.0 28 249-276 3-31 (223)
89 1d2n_A N-ethylmaleimide-sensit 73.8 0.85 2.9E-05 41.3 0.7 22 248-269 66-87 (272)
90 1u8z_A RAS-related protein RAL 73.5 1.2 4E-05 35.6 1.4 25 246-270 4-28 (168)
91 3rjt_A Lipolytic protein G-D-S 73.2 8.6 0.00029 32.0 6.8 53 144-196 116-182 (216)
92 3tmk_A Thymidylate kinase; pho 73.2 2.6 8.9E-05 38.4 3.8 72 292-374 125-204 (216)
93 3a4m_A L-seryl-tRNA(SEC) kinas 73.0 1.4 4.6E-05 40.3 1.8 26 249-274 7-36 (260)
94 2j41_A Guanylate kinase; GMP, 72.7 1.3 4.5E-05 37.6 1.6 22 249-270 9-30 (207)
95 1jbk_A CLPB protein; beta barr 72.7 1.5 5.1E-05 35.7 1.9 22 248-269 45-66 (195)
96 3q72_A GTP-binding protein RAD 72.7 1.2 4.2E-05 35.9 1.3 20 248-267 4-23 (166)
97 2grj_A Dephospho-COA kinase; T 72.6 1.5 5.1E-05 39.0 2.0 28 248-275 14-42 (192)
98 2wwf_A Thymidilate kinase, put 72.3 1.3 4.6E-05 37.8 1.5 20 249-268 13-32 (212)
99 3eie_A Vacuolar protein sortin 71.7 2.5 8.6E-05 39.6 3.4 44 226-269 31-74 (322)
100 1zud_1 Adenylyltransferase THI 71.4 14 0.00046 34.0 8.2 73 104-188 76-149 (251)
101 2g6b_A RAS-related protein RAB 71.2 1.2 4E-05 36.6 0.9 24 247-270 11-34 (180)
102 3con_A GTPase NRAS; structural 70.9 1.8 6E-05 36.1 1.9 32 238-269 13-44 (190)
103 4bas_A ADP-ribosylation factor 70.1 44 0.0015 27.4 10.8 132 241-374 12-191 (199)
104 3hdt_A Putative kinase; struct 69.2 15 0.00052 33.3 8.0 70 294-373 138-219 (223)
105 3dc7_A Putative uncharacterize 69.1 9.5 0.00032 32.9 6.3 47 145-191 114-183 (232)
106 2yvu_A Probable adenylyl-sulfa 68.8 1.8 6.1E-05 36.7 1.6 25 249-273 16-44 (186)
107 1np6_A Molybdopterin-guanine d 68.5 2.3 7.8E-05 37.4 2.2 30 249-278 9-42 (174)
108 2p65_A Hypothetical protein PF 68.4 1.7 5.8E-05 35.5 1.3 22 248-269 45-66 (187)
109 1kgd_A CASK, peripheral plasma 68.2 1.7 5.9E-05 37.1 1.3 78 292-372 94-178 (180)
110 1z0f_A RAB14, member RAS oncog 67.9 1.8 6.3E-05 35.1 1.4 24 247-270 16-39 (179)
111 1z08_A RAS-related protein RAB 67.9 2.3 7.9E-05 34.3 2.0 23 247-269 7-29 (170)
112 4tmk_A Protein (thymidylate ki 67.8 28 0.00097 31.2 9.4 73 292-375 132-209 (213)
113 1gtv_A TMK, thymidylate kinase 67.6 0.9 3.1E-05 39.0 -0.6 26 249-274 3-32 (214)
114 3d3q_A TRNA delta(2)-isopenten 67.6 2.2 7.4E-05 42.0 2.1 23 249-271 10-33 (340)
115 1r8s_A ADP-ribosylation factor 67.6 14 0.00048 29.5 6.6 21 249-269 3-23 (164)
116 3bc1_A RAS-related protein RAB 67.4 2.1 7.3E-05 35.1 1.7 24 247-270 12-35 (195)
117 3tqf_A HPR(Ser) kinase; transf 67.3 2.5 8.4E-05 38.6 2.2 26 249-274 19-44 (181)
118 2wjg_A FEOB, ferrous iron tran 66.7 2.7 9.2E-05 34.8 2.2 34 245-278 6-39 (188)
119 2px0_A Flagellar biosynthesis 66.6 2.3 8E-05 40.2 2.0 30 248-277 107-141 (296)
120 4h08_A Putative hydrolase; GDS 66.6 9.4 0.00032 32.2 5.7 49 145-193 96-164 (200)
121 1gvn_B Zeta; postsegregational 66.4 3.2 0.00011 38.8 2.9 20 249-268 36-55 (287)
122 3n70_A Transport activator; si 66.4 2 6.8E-05 35.5 1.3 32 247-279 25-56 (145)
123 1ltq_A Polynucleotide kinase; 66.3 2.4 8.1E-05 38.7 1.9 27 249-275 5-33 (301)
124 3o47_A ADP-ribosylation factor 65.3 5.1 0.00017 38.0 4.1 29 248-277 167-195 (329)
125 2qp9_X Vacuolar protein sortin 65.2 4.1 0.00014 39.0 3.4 48 226-273 64-112 (355)
126 3v7e_A Ribosome-associated pro 65.2 18 0.00062 28.0 6.6 53 150-204 19-73 (82)
127 2plr_A DTMP kinase, probable t 65.1 2.2 7.4E-05 36.2 1.4 23 249-271 7-30 (213)
128 2v3c_C SRP54, signal recogniti 65.1 2.8 9.4E-05 42.1 2.3 27 248-274 101-131 (432)
129 1z06_A RAS-related protein RAB 64.9 3.1 0.00011 34.7 2.3 24 246-269 20-43 (189)
130 1jw9_B Molybdopterin biosynthe 64.5 19 0.00065 32.9 7.7 72 105-188 80-152 (249)
131 2qz4_A Paraplegin; AAA+, SPG7, 64.3 2.7 9.3E-05 37.0 1.9 24 249-272 42-66 (262)
132 1zp6_A Hypothetical protein AT 64.3 2.4 8.4E-05 35.6 1.5 21 249-269 12-32 (191)
133 2yc2_C IFT27, small RAB-relate 63.7 5.7 0.0002 33.1 3.7 24 246-269 20-43 (208)
134 2cvh_A DNA repair and recombin 63.3 2.9 0.0001 35.7 1.8 36 243-278 16-53 (220)
135 3h4m_A Proteasome-activating n 63.3 3.3 0.00011 37.3 2.3 26 249-274 54-80 (285)
136 2a9k_A RAS-related protein RAL 63.1 1.5 5.1E-05 35.9 -0.0 28 243-270 15-42 (187)
137 3dm5_A SRP54, signal recogniti 62.6 3 0.0001 42.4 2.1 29 247-275 101-133 (443)
138 3hws_A ATP-dependent CLP prote 62.5 2.3 7.7E-05 40.4 1.1 25 245-269 50-74 (363)
139 2e87_A Hypothetical protein PH 62.4 18 0.00062 34.4 7.4 33 247-279 168-200 (357)
140 3ec2_A DNA replication protein 62.3 2.4 8.1E-05 35.8 1.1 28 248-275 40-72 (180)
141 3cbq_A GTP-binding protein REM 61.8 1.4 4.8E-05 37.8 -0.5 21 247-267 24-44 (195)
142 1zj6_A ADP-ribosylation factor 61.6 12 0.00042 30.9 5.4 23 247-269 17-39 (187)
143 1uj2_A Uridine-cytidine kinase 61.1 3 0.0001 37.5 1.6 24 249-272 25-49 (252)
144 1wms_A RAB-9, RAB9, RAS-relate 61.1 3 0.0001 33.9 1.4 28 247-274 8-35 (177)
145 3q85_A GTP-binding protein REM 61.0 1.8 6.1E-05 35.0 0.1 20 248-267 4-23 (169)
146 2drn_C 24-residues peptide fro 60.9 4.1 0.00014 26.2 1.7 15 358-372 2-16 (26)
147 3sr0_A Adenylate kinase; phosp 60.9 2.8 9.7E-05 37.6 1.4 25 249-273 3-28 (206)
148 2wji_A Ferrous iron transport 60.8 3.2 0.00011 34.1 1.6 31 247-277 4-34 (165)
149 2bdt_A BH3686; alpha-beta prot 60.8 2.9 9.9E-05 35.4 1.3 20 249-268 5-24 (189)
150 3t5g_A GTP-binding protein RHE 60.5 0.91 3.1E-05 37.5 -1.8 39 338-377 132-174 (181)
151 2bov_A RAla, RAS-related prote 60.5 1.7 5.8E-05 36.5 -0.2 25 245-269 13-37 (206)
152 4hlc_A DTMP kinase, thymidylat 60.4 19 0.00065 32.0 6.7 74 293-373 125-201 (205)
153 4edh_A DTMP kinase, thymidylat 60.4 23 0.00077 31.7 7.3 74 292-373 131-207 (213)
154 3lxx_A GTPase IMAP family memb 60.2 19 0.00065 31.6 6.6 32 246-277 29-60 (239)
155 1vjg_A Putative lipase from th 60.2 12 0.0004 32.0 5.1 48 145-192 117-177 (218)
156 2bbw_A Adenylate kinase 4, AK4 59.8 3 0.0001 37.2 1.4 24 249-272 30-54 (246)
157 2xxa_A Signal recognition part 59.1 3.7 0.00013 41.2 2.0 26 249-274 103-133 (433)
158 2g3y_A GTP-binding protein GEM 59.1 7.2 0.00025 34.6 3.7 21 247-267 38-58 (211)
159 4a1f_A DNAB helicase, replicat 59.0 43 0.0015 32.5 9.5 64 186-269 5-69 (338)
160 1c9k_A COBU, adenosylcobinamid 58.9 3.9 0.00013 36.6 1.9 25 249-273 2-26 (180)
161 1v5w_A DMC1, meiotic recombina 58.5 4.2 0.00014 38.9 2.2 26 243-268 118-144 (343)
162 2vp4_A Deoxynucleoside kinase; 58.5 3.5 0.00012 36.7 1.5 22 249-270 23-44 (230)
163 3b9p_A CG5977-PA, isoform A; A 58.3 4.6 0.00016 36.6 2.3 25 248-272 56-81 (297)
164 3kl4_A SRP54, signal recogniti 58.2 3.5 0.00012 41.6 1.6 27 248-274 99-129 (433)
165 1ojl_A Transcriptional regulat 58.1 3.3 0.00011 38.9 1.4 40 247-287 26-67 (304)
166 3d8b_A Fidgetin-like protein 1 58.1 7.4 0.00025 37.1 3.8 47 227-273 98-145 (357)
167 3t15_A Ribulose bisphosphate c 58.1 3.8 0.00013 38.1 1.7 28 249-276 39-67 (293)
168 2w58_A DNAI, primosome compone 57.4 3.3 0.00011 35.3 1.2 22 247-268 55-76 (202)
169 1xwi_A SKD1 protein; VPS4B, AA 57.4 7.9 0.00027 36.5 3.8 44 226-269 25-68 (322)
170 2c9o_A RUVB-like 1; hexameric 57.4 3.2 0.00011 41.1 1.2 24 248-271 65-89 (456)
171 3kkq_A RAS-related protein M-R 57.4 1.3 4.6E-05 36.5 -1.3 29 241-269 13-41 (183)
172 1ofh_A ATP-dependent HSL prote 57.2 4.3 0.00015 36.5 1.9 21 248-268 52-72 (310)
173 3a1s_A Iron(II) transport prot 56.9 4.8 0.00016 36.8 2.2 33 247-279 6-38 (258)
174 3cf0_A Transitional endoplasmi 56.4 5 0.00017 37.2 2.3 21 248-268 51-71 (301)
175 4dkx_A RAS-related protein RAB 56.3 4.4 0.00015 36.2 1.8 25 245-269 12-36 (216)
176 3v7q_A Probable ribosomal prot 56.3 31 0.0011 27.6 6.7 43 160-204 39-81 (101)
177 4dsu_A GTPase KRAS, isoform 2B 56.2 2.1 7.1E-05 35.2 -0.4 34 339-373 130-167 (189)
178 3vfd_A Spastin; ATPase, microt 56.1 8.3 0.00029 37.0 3.8 27 247-273 149-176 (389)
179 3syl_A Protein CBBX; photosynt 56.1 3.7 0.00013 37.2 1.3 21 248-268 69-89 (309)
180 3on1_A BH2414 protein; structu 56.1 30 0.001 27.6 6.6 43 160-204 38-80 (101)
181 2bjv_A PSP operon transcriptio 56.0 3.6 0.00012 36.8 1.2 24 247-270 30-53 (265)
182 1lvg_A Guanylate kinase, GMP k 55.9 3.9 0.00013 35.7 1.3 44 329-373 141-188 (198)
183 1m7g_A Adenylylsulfate kinase; 55.8 3.6 0.00012 35.8 1.2 20 249-268 28-47 (211)
184 2fn4_A P23, RAS-related protei 55.5 1.4 4.8E-05 35.9 -1.5 24 246-269 9-32 (181)
185 1kao_A RAP2A; GTP-binding prot 55.3 2.9 9.9E-05 33.3 0.4 24 246-269 3-26 (167)
186 1lv7_A FTSH; alpha/beta domain 55.1 5 0.00017 35.8 1.9 21 249-269 48-68 (257)
187 3tkl_A RAS-related protein RAB 55.0 1.8 6E-05 36.1 -1.0 37 338-375 142-182 (196)
188 2r62_A Cell division protease 55.0 1.9 6.6E-05 38.5 -0.8 21 249-269 47-67 (268)
189 1rz3_A Hypothetical protein rb 54.8 5.2 0.00018 34.7 2.0 27 249-275 25-55 (201)
190 2atv_A RERG, RAS-like estrogen 54.8 2.9 9.8E-05 35.3 0.3 25 246-270 28-52 (196)
191 2vhj_A Ntpase P4, P4; non- hyd 54.6 3.1 0.00011 41.0 0.6 30 249-278 126-156 (331)
192 1yzf_A Lipase/acylhydrolase; s 54.6 17 0.00057 29.7 5.0 49 145-194 93-155 (195)
193 1j8m_F SRP54, signal recogniti 54.6 7.6 0.00026 36.7 3.2 26 249-274 101-130 (297)
194 1vma_A Cell division protein F 54.3 5.1 0.00018 38.2 2.0 26 249-274 107-136 (306)
195 3co5_A Putative two-component 53.7 4 0.00014 33.6 1.0 24 247-270 28-51 (143)
196 4b4t_J 26S protease regulatory 53.7 6.4 0.00022 39.6 2.7 54 218-275 153-212 (405)
197 3umf_A Adenylate kinase; rossm 53.5 4.8 0.00016 36.7 1.6 32 242-273 24-57 (217)
198 2wsm_A Hydrogenase expression/ 53.5 5.5 0.00019 34.1 1.9 29 248-276 32-63 (221)
199 2kjq_A DNAA-related protein; s 53.4 8.5 0.00029 32.3 3.0 30 248-277 38-71 (149)
200 2p5t_B PEZT; postsegregational 52.8 4.3 0.00015 36.7 1.2 23 248-270 34-57 (253)
201 1n0w_A DNA repair protein RAD5 52.6 4.7 0.00016 34.9 1.3 26 243-268 20-46 (243)
202 2q6t_A DNAB replication FORK h 52.6 32 0.0011 33.8 7.5 26 243-268 196-222 (444)
203 3bos_A Putative DNA replicatio 52.5 4.8 0.00016 34.4 1.4 30 248-277 54-87 (242)
204 1ksh_A ARF-like protein 2; sma 52.5 18 0.00061 29.7 4.9 23 246-268 18-40 (186)
205 1zd9_A ADP-ribosylation factor 52.4 13 0.00045 31.0 4.1 25 247-271 23-47 (188)
206 4a74_A DNA repair and recombin 52.1 4.8 0.00017 34.5 1.3 26 243-268 21-47 (231)
207 4gp7_A Metallophosphoesterase; 52.1 3.8 0.00013 34.8 0.6 17 249-265 12-28 (171)
208 3b1v_A Ferrous iron uptake tra 51.9 5.4 0.00018 37.1 1.7 30 248-277 5-34 (272)
209 3pfi_A Holliday junction ATP-d 51.9 6.3 0.00022 36.4 2.2 33 248-280 57-92 (338)
210 3asz_A Uridine kinase; cytidin 51.9 4.9 0.00017 34.5 1.3 22 249-270 9-31 (211)
211 1nij_A Hypothetical protein YJ 51.7 7.5 0.00026 36.7 2.7 27 249-275 7-35 (318)
212 1e6c_A Shikimate kinase; phosp 51.4 58 0.002 26.4 7.9 69 294-372 95-170 (173)
213 3k53_A Ferrous iron transport 51.4 7.1 0.00024 35.4 2.4 32 248-279 5-36 (271)
214 1um8_A ATP-dependent CLP prote 51.4 6.4 0.00022 37.3 2.2 25 247-271 73-98 (376)
215 3l07_A Bifunctional protein fo 51.4 1E+02 0.0035 29.6 10.5 147 95-273 34-188 (285)
216 3c8u_A Fructokinase; YP_612366 51.3 6.6 0.00023 34.1 2.1 30 249-278 25-58 (208)
217 2w0m_A SSO2452; RECA, SSPF, un 51.3 5.1 0.00018 34.1 1.3 25 243-267 19-44 (235)
218 2chg_A Replication factor C sm 51.3 5.2 0.00018 33.2 1.4 20 249-268 41-60 (226)
219 2cjw_A GTP-binding protein GEM 51.2 3.6 0.00012 35.1 0.3 21 247-267 7-27 (192)
220 2qgz_A Helicase loader, putati 51.2 9.6 0.00033 35.9 3.3 40 228-273 140-184 (308)
221 2z43_A DNA repair and recombin 51.0 5.9 0.0002 37.3 1.8 26 243-268 103-129 (324)
222 1knx_A Probable HPR(Ser) kinas 51.0 6.7 0.00023 38.1 2.3 99 143-274 68-175 (312)
223 3uk6_A RUVB-like 2; hexameric 50.7 5.1 0.00018 37.3 1.3 22 248-269 72-93 (368)
224 3oes_A GTPase rhebl1; small GT 50.6 1.4 5E-05 37.4 -2.3 27 243-269 21-47 (201)
225 1upt_A ARL1, ADP-ribosylation 50.4 15 0.00053 29.3 4.0 22 247-268 8-29 (171)
226 2ehv_A Hypothetical protein PH 50.4 3.9 0.00013 35.5 0.5 25 243-267 26-51 (251)
227 1hqc_A RUVB; extended AAA-ATPa 50.2 6.6 0.00023 35.8 2.0 24 248-271 40-64 (324)
228 3pxg_A Negative regulator of g 50.2 7.5 0.00026 38.7 2.5 23 247-269 202-224 (468)
229 1g8p_A Magnesium-chelatase 38 50.1 6.4 0.00022 36.2 1.9 21 249-269 48-68 (350)
230 2qby_B CDC6 homolog 3, cell di 50.1 6.5 0.00022 36.5 2.0 22 248-269 47-68 (384)
231 1zu4_A FTSY; GTPase, signal re 49.9 6.6 0.00023 37.6 2.0 26 249-274 108-137 (320)
232 3p32_A Probable GTPase RV1496/ 49.8 6.2 0.00021 37.7 1.8 36 248-283 81-120 (355)
233 1c1y_A RAS-related protein RAP 49.8 2 6.9E-05 34.4 -1.4 23 247-269 4-26 (167)
234 1ls1_A Signal recognition part 49.7 6.9 0.00024 36.8 2.1 26 249-274 101-130 (295)
235 2cxx_A Probable GTP-binding pr 49.5 6.2 0.00021 32.4 1.5 30 248-277 3-32 (190)
236 2q0q_A ARYL esterase; SGNH hyd 49.5 27 0.00092 29.3 5.6 24 169-192 163-186 (216)
237 1sxj_C Activator 1 40 kDa subu 49.4 9.3 0.00032 35.7 2.9 37 225-269 33-69 (340)
238 2o52_A RAS-related protein RAB 49.3 5.5 0.00019 33.9 1.2 38 338-376 151-192 (200)
239 1m2o_B GTP-binding protein SAR 49.3 16 0.00055 30.7 4.2 23 247-269 24-46 (190)
240 4fcw_A Chaperone protein CLPB; 49.2 5.7 0.00019 36.0 1.4 22 248-269 49-70 (311)
241 1s96_A Guanylate kinase, GMP k 48.7 5.9 0.0002 35.7 1.4 78 294-373 108-198 (219)
242 3iby_A Ferrous iron transport 48.6 7.8 0.00027 35.4 2.2 31 249-279 4-34 (256)
243 1jal_A YCHF protein; nucleotid 48.3 6.8 0.00023 38.7 1.8 32 248-279 4-35 (363)
244 2nzj_A GTP-binding protein REM 48.3 12 0.00042 30.1 3.1 22 247-268 5-26 (175)
245 2h17_A ADP-ribosylation factor 48.1 20 0.00068 29.6 4.5 26 246-271 21-46 (181)
246 2ew1_A RAS-related protein RAB 48.0 4.8 0.00016 34.8 0.6 23 247-269 27-49 (201)
247 1z6g_A Guanylate kinase; struc 47.8 6.2 0.00021 35.0 1.3 45 328-373 161-208 (218)
248 1zbd_A Rabphilin-3A; G protein 47.7 5.3 0.00018 33.6 0.9 25 247-271 9-33 (203)
249 2qu8_A Putative nucleolar GTP- 47.7 7.7 0.00026 33.8 1.9 33 246-278 29-61 (228)
250 1njg_A DNA polymerase III subu 47.7 6.1 0.00021 33.0 1.2 20 249-268 48-67 (250)
251 1ky3_A GTP-binding protein YPT 47.4 10 0.00035 30.7 2.5 24 246-269 8-31 (182)
252 2hup_A RAS-related protein RAB 47.3 7.8 0.00027 33.0 1.9 25 247-271 30-54 (201)
253 2qby_A CDC6 homolog 1, cell di 47.0 7.9 0.00027 35.5 2.0 30 248-277 47-83 (386)
254 1znw_A Guanylate kinase, GMP k 46.8 6.6 0.00023 34.1 1.3 25 243-267 16-41 (207)
255 2r2a_A Uncharacterized protein 46.5 9.9 0.00034 33.9 2.5 32 249-280 8-52 (199)
256 3i8s_A Ferrous iron transport 46.4 8.8 0.0003 35.3 2.2 33 247-279 4-36 (274)
257 1sxj_A Activator 1 95 kDa subu 46.4 8.5 0.00029 38.7 2.3 29 248-276 79-108 (516)
258 2ffh_A Protein (FFH); SRP54, s 46.3 8 0.00028 38.9 2.1 27 249-275 101-131 (425)
259 4b4t_K 26S protease regulatory 46.0 8.1 0.00028 38.9 2.0 48 225-276 184-237 (428)
260 3bzw_A Putative lipase; protei 46.0 28 0.00095 31.2 5.4 49 144-192 144-220 (274)
261 1ixz_A ATP-dependent metallopr 45.9 6.9 0.00024 34.7 1.4 20 249-268 52-71 (254)
262 2o14_A Hypothetical protein YX 45.8 28 0.00094 33.7 5.7 52 145-196 256-323 (375)
263 2lkc_A Translation initiation 45.8 8.3 0.00029 31.2 1.7 31 247-277 9-39 (178)
264 4edh_A DTMP kinase, thymidylat 45.7 8.4 0.00029 34.6 1.9 26 249-274 9-38 (213)
265 2vli_A Antibiotic resistance p 45.4 54 0.0018 26.9 6.8 65 296-374 108-173 (183)
266 2dr3_A UPF0273 protein PH0284; 45.4 7.1 0.00024 33.8 1.3 31 329-360 144-175 (247)
267 2i1q_A DNA repair and recombin 45.3 8.3 0.00028 35.9 1.9 26 243-268 94-120 (322)
268 3hr8_A Protein RECA; alpha and 45.2 8.1 0.00028 37.9 1.8 70 189-267 11-82 (356)
269 1ko7_A HPR kinase/phosphatase; 45.2 9.3 0.00032 37.1 2.2 26 249-274 147-172 (314)
270 2hf9_A Probable hydrogenase ni 44.7 4.9 0.00017 34.6 0.2 21 248-268 40-60 (226)
271 1fzq_A ADP-ribosylation factor 44.7 12 0.00042 31.1 2.7 24 246-269 16-39 (181)
272 1sxj_D Activator 1 41 kDa subu 44.6 7.4 0.00025 35.7 1.4 21 249-269 61-81 (353)
273 2j37_W Signal recognition part 44.5 8 0.00027 39.7 1.7 28 248-275 103-134 (504)
274 2r44_A Uncharacterized protein 44.3 7.4 0.00025 36.0 1.3 29 248-276 48-77 (331)
275 3tw8_B RAS-related protein RAB 43.7 8.6 0.00029 31.1 1.5 35 339-374 135-173 (181)
276 3cpj_B GTP-binding protein YPT 43.6 6 0.00021 34.2 0.6 36 338-374 139-178 (223)
277 2hsj_A Putative platelet activ 43.6 18 0.00062 30.4 3.6 49 145-193 109-180 (214)
278 2ocp_A DGK, deoxyguanosine kin 43.6 9.9 0.00034 33.7 2.0 25 249-273 5-31 (241)
279 2dyk_A GTP-binding protein; GT 43.5 9.3 0.00032 30.3 1.7 29 249-277 4-33 (161)
280 1g16_A RAS-related protein SEC 43.5 9.3 0.00032 30.5 1.6 25 248-272 5-29 (170)
281 1ye8_A Protein THEP1, hypothet 43.4 8.6 0.00029 33.3 1.5 28 249-276 3-31 (178)
282 3v9p_A DTMP kinase, thymidylat 43.0 11 0.00037 34.5 2.2 37 225-268 11-47 (227)
283 1a7j_A Phosphoribulokinase; tr 42.6 11 0.00036 35.4 2.1 22 249-270 8-30 (290)
284 1yrb_A ATP(GTP)binding protein 42.6 9.6 0.00033 33.6 1.7 32 245-276 13-47 (262)
285 3hu3_A Transitional endoplasmi 42.4 11 0.00038 38.2 2.4 22 248-269 240-261 (489)
286 2zan_A Vacuolar protein sortin 42.3 17 0.00059 35.9 3.7 44 226-269 147-190 (444)
287 2zts_A Putative uncharacterize 42.1 4.7 0.00016 34.9 -0.4 25 243-267 26-51 (251)
288 3rui_A Ubiquitin-like modifier 42.0 20 0.00067 35.3 4.0 69 110-188 89-170 (340)
289 2r8r_A Sensor protein; KDPD, P 41.8 10 0.00035 35.4 1.8 28 247-274 7-38 (228)
290 4b4t_L 26S protease subunit RP 41.8 10 0.00035 38.4 2.0 55 218-276 186-246 (437)
291 1l8q_A Chromosomal replication 41.7 10 0.00034 35.0 1.8 28 248-275 39-70 (324)
292 1udx_A The GTP-binding protein 41.4 9.1 0.00031 38.2 1.5 123 247-374 158-327 (416)
293 2fu5_C RAS-related protein RAB 41.1 8 0.00027 31.7 0.9 23 247-269 9-31 (183)
294 1iy2_A ATP-dependent metallopr 40.9 9.1 0.00031 34.7 1.4 20 249-268 76-95 (278)
295 3bgw_A DNAB-like replicative h 40.9 56 0.0019 32.5 7.2 36 243-278 193-233 (444)
296 1p5z_B DCK, deoxycytidine kina 40.7 8.9 0.0003 34.5 1.2 27 248-274 26-54 (263)
297 2gj8_A MNME, tRNA modification 40.6 11 0.00037 31.4 1.7 31 248-278 6-37 (172)
298 2x8a_A Nuclear valosin-contain 40.5 13 0.00043 34.4 2.3 20 249-268 47-66 (274)
299 2dby_A GTP-binding protein; GD 40.4 7.6 0.00026 38.1 0.8 32 248-279 3-34 (368)
300 3v9p_A DTMP kinase, thymidylat 40.4 23 0.00078 32.3 3.9 72 292-371 151-225 (227)
301 1u94_A RECA protein, recombina 40.2 11 0.00039 36.6 2.0 81 188-278 13-99 (356)
302 1byi_A Dethiobiotin synthase; 40.1 12 0.00042 32.2 2.0 26 249-274 4-34 (224)
303 2v1u_A Cell division control p 40.0 9.8 0.00034 35.0 1.4 21 248-268 46-66 (387)
304 3ld9_A DTMP kinase, thymidylat 40.0 9.1 0.00031 35.0 1.2 28 248-275 23-55 (223)
305 2ohf_A Protein OLA1, GTP-bindi 39.4 9.5 0.00032 38.1 1.3 32 248-279 24-55 (396)
306 3e70_C DPA, signal recognition 39.2 12 0.00042 36.0 2.0 19 249-267 132-150 (328)
307 3zq6_A Putative arsenical pump 39.0 22 0.00076 33.4 3.8 65 249-314 17-93 (324)
308 2b6h_A ADP-ribosylation factor 38.9 16 0.00056 30.7 2.6 22 247-268 30-51 (192)
309 2zej_A Dardarin, leucine-rich 38.8 10 0.00035 31.6 1.2 21 248-268 4-24 (184)
310 2f1r_A Molybdopterin-guanine d 38.8 6.7 0.00023 34.2 0.1 30 249-278 5-38 (171)
311 4b4t_M 26S protease regulatory 38.6 12 0.00042 37.7 2.0 47 226-276 194-246 (434)
312 3igf_A ALL4481 protein; two-do 38.6 24 0.00082 34.7 4.0 58 249-308 5-74 (374)
313 4dzz_A Plasmid partitioning pr 38.4 12 0.0004 31.6 1.6 28 253-280 9-40 (206)
314 1cr0_A DNA primase/helicase; R 38.4 10 0.00035 34.6 1.3 31 244-274 32-68 (296)
315 3end_A Light-independent proto 38.4 13 0.00045 34.1 2.0 30 249-278 44-77 (307)
316 1rj9_A FTSY, signal recognitio 38.0 11 0.00036 35.9 1.3 19 249-267 105-123 (304)
317 2zr9_A Protein RECA, recombina 38.0 13 0.00044 35.9 2.0 81 189-278 12-97 (349)
318 4i1u_A Dephospho-COA kinase; s 38.0 15 0.00051 33.5 2.3 30 248-277 11-40 (210)
319 3lda_A DNA repair protein RAD5 37.8 10 0.00036 37.6 1.3 25 243-267 174-199 (400)
320 2pt5_A Shikimate kinase, SK; a 37.7 39 0.0013 27.5 4.6 72 294-374 94-165 (168)
321 2y8e_A RAB-protein 6, GH09086P 37.3 14 0.00048 29.7 1.8 26 244-269 12-37 (179)
322 3h16_A TIR protein; bacteria T 37.2 7.7 0.00026 32.9 0.2 45 326-371 84-153 (154)
323 1z2a_A RAS-related protein RAB 37.2 14 0.00047 29.4 1.7 25 247-271 6-30 (168)
324 2erx_A GTP-binding protein DI- 36.8 16 0.00053 29.1 2.0 31 247-277 4-34 (172)
325 3pxi_A Negative regulator of g 36.8 16 0.00054 38.5 2.5 23 247-269 202-224 (758)
326 3hdt_A Putative kinase; struct 36.8 14 0.00047 33.6 1.9 43 249-291 17-64 (223)
327 1x3s_A RAS-related protein RAB 36.6 9.1 0.00031 31.5 0.6 30 241-270 10-39 (195)
328 3lv8_A DTMP kinase, thymidylat 36.5 11 0.00038 34.6 1.2 25 248-272 29-57 (236)
329 1ek0_A Protein (GTP-binding pr 36.4 14 0.00047 29.4 1.6 24 247-270 4-27 (170)
330 1iqp_A RFCS; clamp loader, ext 36.4 12 0.00041 33.7 1.4 21 249-269 49-69 (327)
331 1p5z_B DCK, deoxycytidine kina 36.3 1.6E+02 0.0056 26.1 8.9 72 292-372 174-258 (263)
332 1odf_A YGR205W, hypothetical 3 36.3 12 0.0004 35.3 1.3 19 249-267 34-52 (290)
333 3b9q_A Chloroplast SRP recepto 36.1 12 0.00041 35.4 1.4 19 249-267 103-121 (302)
334 3l0i_B RAS-related protein RAB 36.0 9.5 0.00033 32.1 0.6 25 247-271 34-58 (199)
335 1x6v_B Bifunctional 3'-phospho 35.8 14 0.00047 39.3 1.9 28 248-275 54-85 (630)
336 1oix_A RAS-related protein RAB 35.7 14 0.00049 31.1 1.7 23 247-269 30-52 (191)
337 3cph_A RAS-related protein SEC 35.7 14 0.00049 30.9 1.7 25 247-271 21-45 (213)
338 2chq_A Replication factor C sm 35.6 12 0.00043 33.5 1.4 21 249-269 41-61 (319)
339 1fnn_A CDC6P, cell division co 35.5 12 0.00042 34.5 1.4 20 249-268 47-66 (389)
340 2a5j_A RAS-related protein RAB 35.4 15 0.0005 30.7 1.7 25 247-271 22-46 (191)
341 1sxj_B Activator 1 37 kDa subu 35.3 12 0.00041 33.7 1.2 21 249-269 45-65 (323)
342 2pbr_A DTMP kinase, thymidylat 35.1 1.8E+02 0.0063 23.6 9.3 69 292-372 122-191 (195)
343 3dci_A Arylesterase; SGNH_hydr 35.1 43 0.0015 29.0 4.7 22 169-190 177-198 (232)
344 2ce2_X GTPase HRAS; signaling 35.0 15 0.00052 28.8 1.6 23 247-269 4-26 (166)
345 3nkl_A UDP-D-quinovosamine 4-d 34.7 89 0.003 24.9 6.3 87 96-188 3-98 (141)
346 3kjh_A CO dehydrogenase/acetyl 34.6 11 0.00036 32.6 0.7 28 249-276 3-34 (254)
347 2jeo_A Uridine-cytidine kinase 34.5 13 0.00045 33.1 1.3 23 249-271 28-51 (245)
348 4b4t_I 26S protease regulatory 34.5 16 0.00054 37.3 2.0 54 218-275 187-246 (437)
349 1in4_A RUVB, holliday junction 33.9 13 0.00046 34.9 1.4 39 225-268 33-73 (334)
350 3ug7_A Arsenical pump-driving 33.9 44 0.0015 31.9 5.0 79 228-313 15-106 (349)
351 2v54_A DTMP kinase, thymidylat 33.8 79 0.0027 26.4 6.1 68 293-373 122-191 (204)
352 1m7g_A Adenylylsulfate kinase; 33.8 64 0.0022 27.7 5.6 24 350-373 179-203 (211)
353 1xp8_A RECA protein, recombina 33.8 16 0.00056 35.6 2.0 36 243-278 70-110 (366)
354 2f9l_A RAB11B, member RAS onco 33.7 17 0.00057 30.7 1.8 34 338-372 131-168 (199)
355 4a9a_A Ribosome-interacting GT 33.6 10 0.00036 37.4 0.5 43 246-288 72-114 (376)
356 2bme_A RAB4A, RAS-related prot 33.4 16 0.00055 29.8 1.6 36 338-374 136-175 (186)
357 1nlf_A Regulatory protein REPA 33.3 14 0.00048 33.5 1.3 24 244-267 27-51 (279)
358 2og2_A Putative signal recogni 33.3 14 0.00048 36.2 1.4 19 249-267 160-178 (359)
359 3fdi_A Uncharacterized protein 33.2 18 0.00062 31.8 2.0 27 249-275 9-36 (201)
360 1qvr_A CLPB protein; coiled co 33.1 15 0.00052 39.3 1.8 22 248-269 193-214 (854)
361 2gf9_A RAS-related protein RAB 33.1 17 0.00059 30.1 1.7 25 247-271 23-47 (189)
362 2plr_A DTMP kinase, probable t 33.0 1.1E+02 0.0039 25.4 6.9 24 349-372 184-207 (213)
363 1g8f_A Sulfate adenylyltransfe 33.0 12 0.0004 38.7 0.8 25 247-271 396-421 (511)
364 1ypw_A Transitional endoplasmi 32.6 24 0.00082 37.9 3.2 44 226-269 217-261 (806)
365 3k1j_A LON protease, ATP-depen 32.4 22 0.00075 36.5 2.7 34 226-269 50-83 (604)
366 3abi_A Putative uncharacterize 32.3 79 0.0027 30.0 6.5 121 99-227 18-151 (365)
367 2ged_A SR-beta, signal recogni 31.7 19 0.00063 29.8 1.7 27 246-272 48-74 (193)
368 3b85_A Phosphate starvation-in 31.7 24 0.00081 31.5 2.5 19 249-267 25-43 (208)
369 1ni3_A YCHF GTPase, YCHF GTP-b 31.6 16 0.00055 36.2 1.5 32 248-279 22-54 (392)
370 1nrj_B SR-beta, signal recogni 31.5 18 0.00063 30.6 1.7 26 247-272 13-38 (218)
371 4b4t_H 26S protease regulatory 31.4 16 0.00056 37.5 1.5 42 226-272 222-270 (467)
372 2fh5_B SR-beta, signal recogni 31.3 19 0.00066 30.4 1.8 30 247-277 8-37 (214)
373 2wwf_A Thymidilate kinase, put 31.2 49 0.0017 27.9 4.3 70 292-373 130-200 (212)
374 2bcg_Y Protein YP2, GTP-bindin 31.2 18 0.00062 30.4 1.6 34 339-373 135-172 (206)
375 3bh0_A DNAB-like replicative h 31.0 21 0.00072 33.5 2.2 35 243-277 64-103 (315)
376 1y8q_A Ubiquitin-like 1 activa 31.0 1.2E+02 0.004 29.2 7.5 78 98-188 78-156 (346)
377 1jr3_A DNA polymerase III subu 30.7 17 0.00057 33.6 1.4 20 249-268 41-60 (373)
378 1pzn_A RAD51, DNA repair and r 30.7 16 0.00055 35.1 1.3 25 243-267 127-152 (349)
379 1bif_A 6-phosphofructo-2-kinas 30.5 15 0.00053 36.4 1.2 21 248-268 41-61 (469)
380 2f7s_A C25KG, RAS-related prot 29.9 21 0.00073 30.2 1.8 25 247-271 26-50 (217)
381 1mh1_A RAC1; GTP-binding, GTPa 29.8 22 0.00076 28.8 1.9 23 246-268 5-27 (186)
382 3llm_A ATP-dependent RNA helic 29.8 13 0.00045 32.8 0.5 15 247-261 77-91 (235)
383 3t1o_A Gliding protein MGLA; G 29.7 19 0.00065 29.4 1.4 37 338-375 154-195 (198)
384 2hxs_A RAB-26, RAS-related pro 29.6 20 0.00068 28.9 1.5 23 246-268 6-28 (178)
385 3pqc_A Probable GTP-binding pr 29.6 2.2E+02 0.0075 22.9 12.0 25 245-269 22-46 (195)
386 2r6a_A DNAB helicase, replicat 29.6 22 0.00075 35.1 2.1 33 243-275 199-237 (454)
387 1sxj_E Activator 1 40 kDa subu 29.4 16 0.00055 33.7 1.0 20 249-268 39-58 (354)
388 4gie_A Prostaglandin F synthas 29.2 36 0.0012 31.7 3.4 28 160-187 168-195 (290)
389 3ihw_A Centg3; RAS, centaurin, 29.1 24 0.00082 29.5 2.0 31 241-271 15-45 (184)
390 2ce7_A Cell division protein F 29.0 21 0.00072 36.3 1.9 20 249-268 52-71 (476)
391 2i3b_A HCR-ntpase, human cance 28.9 19 0.00065 31.6 1.4 29 249-277 4-36 (189)
392 1es9_A PAF-AH, platelet-activa 28.8 40 0.0014 29.0 3.4 49 145-193 115-179 (232)
393 3lfu_A DNA helicase II; SF1 he 28.8 75 0.0026 32.0 5.9 52 249-316 25-76 (647)
394 2il1_A RAB12; G-protein, GDP, 28.8 19 0.00066 30.1 1.4 26 247-272 27-52 (192)
395 4gsl_A Ubiquitin-like modifier 28.7 40 0.0014 35.8 4.0 71 108-188 378-462 (615)
396 2efe_B Small GTP-binding prote 28.5 20 0.00067 29.1 1.3 24 246-269 12-35 (181)
397 3j21_Z 50S ribosomal protein L 28.5 1.3E+02 0.0044 23.7 6.1 29 160-188 35-63 (99)
398 3tif_A Uncharacterized ABC tra 28.5 15 0.00053 33.1 0.7 19 249-267 34-52 (235)
399 3llu_A RAS-related GTP-binding 28.4 20 0.00069 30.1 1.4 24 245-268 19-42 (196)
400 2v9p_A Replication protein E1; 28.4 19 0.00064 34.5 1.3 19 249-267 129-147 (305)
401 3f4w_A Putative hexulose 6 pho 28.3 1E+02 0.0036 26.5 6.1 100 151-253 70-187 (211)
402 3of5_A Dethiobiotin synthetase 28.3 25 0.00084 31.8 2.0 28 249-276 7-39 (228)
403 2yhs_A FTSY, cell division pro 28.2 19 0.00064 37.3 1.3 92 164-267 221-314 (503)
404 2lbw_A H/ACA ribonucleoprotein 28.2 85 0.0029 25.9 5.2 42 160-203 40-82 (121)
405 3nbx_X ATPase RAVA; AAA+ ATPas 28.1 21 0.0007 36.5 1.6 22 248-269 43-64 (500)
406 1vg8_A RAS-related protein RAB 28.0 24 0.00083 29.3 1.8 24 246-269 8-31 (207)
407 4fmw_A RNA (guanine-9-)-methyl 28.0 51 0.0018 29.8 4.1 44 240-283 113-159 (197)
408 2ale_A SNU13, NHP2/L7AE family 27.9 44 0.0015 28.4 3.4 43 160-204 52-95 (134)
409 3elf_A Fructose-bisphosphate a 27.7 1.4E+02 0.0046 29.6 7.3 13 300-312 221-233 (349)
410 3aez_A Pantothenate kinase; tr 27.6 20 0.00069 34.0 1.4 19 249-267 93-111 (312)
411 2eq5_A 228AA long hypothetical 27.5 1.3E+02 0.0046 26.2 6.7 120 98-233 7-143 (228)
412 1g41_A Heat shock protein HSLU 27.5 25 0.00087 35.6 2.2 25 248-272 52-77 (444)
413 1qop_A Tryptophan synthase alp 27.5 20 0.00069 33.1 1.3 94 159-253 125-234 (268)
414 3tmk_A Thymidylate kinase; pho 27.3 19 0.00066 32.6 1.1 21 249-269 8-28 (216)
415 2axn_A 6-phosphofructo-2-kinas 27.3 19 0.00064 36.8 1.2 21 249-269 38-58 (520)
416 1aky_A Adenylate kinase; ATP:A 27.3 2.4E+02 0.0083 24.0 8.2 18 355-372 202-219 (220)
417 2iwr_A Centaurin gamma 1; ANK 27.1 24 0.00081 28.6 1.6 28 244-271 5-32 (178)
418 2oil_A CATX-8, RAS-related pro 27.1 24 0.00083 29.2 1.6 35 338-373 151-189 (193)
419 1fxw_F Alpha2, platelet-activa 26.9 37 0.0013 29.3 2.9 48 145-192 116-179 (229)
420 3pvs_A Replication-associated 26.8 28 0.00095 34.8 2.3 39 223-269 35-73 (447)
421 2oze_A ORF delta'; para, walke 26.7 27 0.00091 31.7 2.0 22 254-275 45-70 (298)
422 3n6q_A YGHZ aldo-keto reductas 26.6 82 0.0028 29.8 5.5 30 163-193 196-226 (346)
423 1pui_A ENGB, probable GTP-bind 26.6 17 0.00057 30.6 0.5 20 248-267 28-47 (210)
424 1cp2_A CP2, nitrogenase iron p 26.5 28 0.00095 30.9 2.0 25 251-275 6-34 (269)
425 3tg2_A Vibriobactin-specific i 26.4 88 0.003 28.3 5.4 73 272-357 5-78 (223)
426 2p5s_A RAS and EF-hand domain 26.4 25 0.00087 29.5 1.7 25 246-270 28-52 (199)
427 1g5t_A COB(I)alamin adenosyltr 26.4 32 0.0011 31.2 2.5 59 221-281 5-67 (196)
428 4tmk_A Protein (thymidylate ki 26.4 21 0.00072 32.1 1.2 23 249-271 6-32 (213)
429 2z4s_A Chromosomal replication 26.2 22 0.00074 35.2 1.4 22 248-269 132-153 (440)
430 3cnl_A YLQF, putative uncharac 26.1 24 0.00082 32.5 1.6 33 247-279 100-133 (262)
431 1sq5_A Pantothenate kinase; P- 26.1 22 0.00075 33.2 1.3 20 249-268 83-102 (308)
432 1w41_A 50S ribosomal protein L 26.0 1.3E+02 0.0043 23.8 5.7 44 160-204 36-79 (101)
433 2pcj_A ABC transporter, lipopr 25.9 22 0.00077 31.8 1.3 19 249-267 33-51 (224)
434 1q6o_A Humps, 3-keto-L-gulonat 25.7 3.3E+02 0.011 23.7 9.2 128 113-253 45-191 (216)
435 2vos_A Folylpolyglutamate synt 25.6 22 0.00075 35.8 1.3 27 250-276 65-96 (487)
436 4gac_A Alcohol dehydrogenase [ 25.4 53 0.0018 30.6 3.8 44 144-187 165-208 (324)
437 3u5e_c L32, RP73, YL38, 60S ri 25.4 1.2E+02 0.0042 24.2 5.6 44 160-204 42-85 (105)
438 3cpq_A 50S ribosomal protein L 25.2 1E+02 0.0035 24.9 5.1 44 160-204 41-84 (110)
439 1m7b_A RND3/RHOE small GTP-bin 25.1 28 0.00094 28.8 1.6 23 247-269 8-30 (184)
440 1tue_A Replication protein E1; 25.0 22 0.00074 33.0 1.0 77 169-273 9-86 (212)
441 4a18_G RPL30; ribosome, eukary 24.9 1.3E+02 0.0044 24.0 5.6 44 160-204 42-85 (104)
442 2j0v_A RAC-like GTP-binding pr 24.8 37 0.0013 28.6 2.4 26 244-269 7-32 (212)
443 1tt5_A APPBP1, amyloid protein 24.7 1.3E+02 0.0044 31.0 6.8 81 98-188 74-155 (531)
444 2aif_A Ribosomal protein L7A; 24.5 1.4E+02 0.0048 25.1 6.0 42 160-203 61-103 (135)
445 1svm_A Large T antigen; AAA+ f 24.5 24 0.00083 34.7 1.3 27 248-274 171-198 (377)
446 2gf0_A GTP-binding protein DI- 24.4 30 0.001 28.5 1.7 35 339-374 135-173 (199)
447 3ipz_A Monothiol glutaredoxin- 24.3 2.5E+02 0.0087 21.8 7.4 59 146-204 6-73 (109)
448 1z0j_A RAB-22, RAS-related pro 24.3 29 0.001 27.5 1.6 23 247-269 7-29 (170)
449 3clv_A RAB5 protein, putative; 24.3 30 0.001 28.1 1.7 23 247-269 8-30 (208)
450 3kta_A Chromosome segregation 24.2 20 0.00067 29.9 0.5 14 249-262 29-42 (182)
451 1r2q_A RAS-related protein RAB 24.1 28 0.00095 27.5 1.4 22 247-268 7-28 (170)
452 3t5d_A Septin-7; GTP-binding p 24.1 26 0.0009 31.7 1.4 31 247-277 9-39 (274)
453 3c5c_A RAS-like protein 12; GD 23.9 28 0.00097 29.0 1.5 25 245-269 20-44 (187)
454 2fna_A Conserved hypothetical 23.9 24 0.00083 31.8 1.1 21 248-268 32-52 (357)
455 3q9l_A Septum site-determining 23.7 34 0.0012 29.9 2.0 24 253-276 10-37 (260)
456 2d00_A V-type ATP synthase sub 23.6 86 0.0029 25.6 4.3 73 95-186 1-76 (109)
457 3l6u_A ABC-type sugar transpor 23.4 1.8E+02 0.006 25.4 6.7 103 133-255 39-144 (293)
458 2bdt_A BH3686; alpha-beta prot 23.4 80 0.0027 26.3 4.2 60 296-367 105-168 (189)
459 3jy6_A Transcriptional regulat 23.4 2.9E+02 0.01 23.9 8.1 94 133-256 38-133 (276)
460 1vq8_F 50S ribosomal protein L 23.4 82 0.0028 25.8 4.2 42 160-203 49-91 (120)
461 3pxi_A Negative regulator of g 23.3 26 0.00089 36.8 1.4 22 248-269 523-544 (758)
462 3m6a_A ATP-dependent protease 23.3 26 0.0009 35.7 1.4 21 248-268 110-130 (543)
463 2vp4_A Deoxynucleoside kinase; 23.3 2.4E+02 0.0083 24.5 7.6 73 292-373 146-225 (230)
464 3iz5_f 60S ribosomal protein L 23.3 1.3E+02 0.0045 24.7 5.4 44 160-204 46-89 (112)
465 2eyu_A Twitching motility prot 23.2 28 0.00095 32.1 1.4 19 249-267 28-46 (261)
466 1mv5_A LMRA, multidrug resista 23.2 27 0.00092 31.6 1.3 19 249-267 31-49 (243)
467 1w5s_A Origin recognition comp 23.2 24 0.00082 32.9 1.0 30 249-278 53-94 (412)
468 3f9v_A Minichromosome maintena 23.2 23 0.0008 36.6 1.0 23 247-269 328-350 (595)
469 4a26_A Putative C-1-tetrahydro 23.2 5.1E+02 0.017 24.9 12.1 150 94-274 36-193 (300)
470 1r6b_X CLPA protein; AAA+, N-t 23.1 25 0.00085 36.8 1.2 23 247-269 208-230 (758)
471 2qen_A Walker-type ATPase; unk 23.1 26 0.00089 31.6 1.2 21 248-268 33-53 (350)
472 1htw_A HI0065; nucleotide-bind 23.1 28 0.00097 29.7 1.3 20 249-268 36-55 (158)
473 3gd7_A Fusion complex of cysti 23.1 27 0.00091 34.6 1.3 20 249-268 50-69 (390)
474 3r7w_B Gtpase2, GTP-binding pr 23.1 40 0.0014 32.9 2.6 19 249-267 2-20 (331)
475 1gwn_A RHO-related GTP-binding 23.0 31 0.0011 29.6 1.6 23 247-269 29-51 (205)
476 3uhf_A Glutamate racemase; str 22.9 1.9E+02 0.0064 27.3 7.1 88 108-200 33-128 (274)
477 1rlg_A 50S ribosomal protein L 22.9 89 0.003 25.6 4.3 42 160-203 47-89 (119)
478 1wxq_A GTP-binding protein; st 22.8 27 0.00092 34.3 1.3 31 249-279 3-33 (397)
479 3rlf_A Maltose/maltodextrin im 22.7 28 0.00094 34.6 1.3 19 249-267 32-50 (381)
480 4hs4_A Chromate reductase; tri 22.7 1.5E+02 0.0052 25.9 6.1 29 95-123 4-34 (199)
481 3bwd_D RAC-like GTP-binding pr 22.7 34 0.0012 27.6 1.7 24 246-269 8-31 (182)
482 3gmt_A Adenylate kinase; ssgci 22.6 33 0.0011 31.7 1.8 29 248-276 10-39 (230)
483 2qtf_A Protein HFLX, GTP-bindi 22.6 29 0.00098 33.7 1.4 30 249-278 182-211 (364)
484 1r6b_X CLPA protein; AAA+, N-t 22.5 35 0.0012 35.6 2.2 24 246-269 488-511 (758)
485 3vh1_A Ubiquitin-like modifier 22.5 72 0.0025 33.8 4.5 72 107-188 378-463 (598)
486 2fc3_A 50S ribosomal protein L 22.4 88 0.003 25.8 4.2 42 160-203 48-90 (124)
487 2j1l_A RHO-related GTP-binding 22.4 29 0.00099 29.7 1.3 43 217-268 14-56 (214)
488 1xbi_A 50S ribosomal protein L 22.4 90 0.0031 25.7 4.3 42 160-203 49-91 (120)
489 1xx6_A Thymidine kinase; NESG, 22.4 34 0.0012 30.3 1.7 28 249-276 11-42 (191)
490 2fz4_A DNA repair protein RAD2 22.4 42 0.0015 29.9 2.4 32 227-269 100-131 (237)
491 2xzm_U Ribosomal protein L7AE 22.3 1.1E+02 0.0037 25.7 4.8 41 160-202 44-85 (126)
492 2onk_A Molybdate/tungstate ABC 22.1 30 0.001 31.5 1.3 19 249-267 27-45 (240)
493 2ixe_A Antigen peptide transpo 22.1 29 0.00099 32.1 1.3 19 249-267 48-66 (271)
494 2fn9_A Ribose ABC transporter, 22.1 1.6E+02 0.0056 25.6 6.2 53 135-188 35-89 (290)
495 2dhr_A FTSH; AAA+ protein, hex 22.0 29 0.00099 35.5 1.4 20 249-268 67-86 (499)
496 1svi_A GTP-binding protein YSX 21.9 33 0.0011 28.2 1.5 24 246-269 23-46 (195)
497 1b0u_A Histidine permease; ABC 21.8 29 0.001 31.9 1.3 19 249-267 35-53 (262)
498 3fvq_A Fe(3+) IONS import ATP- 21.7 29 0.001 34.0 1.3 19 249-267 33-51 (359)
499 3ajx_A 3-hexulose-6-phosphate 21.7 1.8E+02 0.0061 24.9 6.2 92 159-253 80-186 (207)
500 2fg5_A RAB-22B, RAS-related pr 21.7 35 0.0012 28.4 1.6 23 247-269 24-46 (192)
No 1
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.0014 Score=54.50 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=68.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCC-CC-----------CCc---cc----------cc------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMG-VE-----------LPK---SL----------FQ------------ 290 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp~-v~-----------lP~---eL----------f~------------ 290 (386)
|+|.|.|+||||=++-.||+ .|+.+-+-+.... .. +.. .+ |.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~ 83 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTER 83 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHH
Confidence 79999999999999999995 4877654432110 00 000 00 00
Q ss_pred ---------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH---HHHHHHHHHHHHHHhhCC-CCcEE-ccC
Q 016625 291 ---------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM---DYVREELEFAGRIFAQNP-VWPVI-VTG 356 (386)
Q Consensus 291 ---------i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~---e~I~~EL~~A~~lf~k~~-~~pvI-VT~ 356 (386)
..+..+|-|+.+++.+.+--..| +- .+.+. +++++..+ ++....+ .+-+| .++
T Consensus 84 ~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r----~r------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~id~~~ 150 (173)
T 3kb2_A 84 QLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR----GD------EYIEGKDIDSILELYR---EVMSNAGLHTYSWDTGQ 150 (173)
T ss_dssp HHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH----SC------SCCCHHHHHHHHHHHH---HHHHTCSSCEEEEETTT
T ss_pred HHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc----CC------cchhhhHHHHHHHHHH---HHHhhcCCCEEEEECCC
Confidence 13567899999999987633344 21 12222 23333222 2222221 34456 677
Q ss_pred ccHHHHHHHHHHHHhcccc
Q 016625 357 KAIEETAAVVLRLYHDRKH 375 (386)
Q Consensus 357 kSIEEtAa~Il~~~~~r~~ 375 (386)
+++||++..|++.++...+
T Consensus 151 ~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 151 WSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp SCHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHhCCCc
Confidence 8999999999999887543
No 2
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.70 E-value=0.0011 Score=56.63 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=66.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCccccc---------------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQ--------------------------------- 290 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp----~v~lP~eLf~--------------------------------- 290 (386)
|+|+|+++||||-++-.||+ .|+.+-+.--+- +.+++ ++|+
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~~~ 86 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIA-WIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVV 86 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChh-hHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCcee
Confidence 89999999999999999995 477654321110 11111 1100
Q ss_pred c---------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHHhhCCCCcEE-ccCc
Q 016625 291 V---------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIFAQNPVWPVI-VTGK 357 (386)
Q Consensus 291 i---------~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~lf~k~~~~pvI-VT~k 357 (386)
. ....+|=|+.+++.|. +|+...+-. ....+.+ .+.+++=...-+.+|++. ..-+| +++.
T Consensus 87 ~~~~~~~~l~~~~~vi~L~~~~e~l~----~Rl~~~~~~--~rp~~~~~~~~~~l~~~~~~r~~~y~~~-ad~~Idt~~~ 159 (185)
T 3trf_A 87 LDEKNRQQISETGVVIYLTASIDTQL----KRIGQKGEM--RRPLFIKNNSKEKLQQLNEIRKPLYQAM-ADLVYPTDDL 159 (185)
T ss_dssp GSHHHHHHHHHHEEEEEEECCHHHHH----HHHHCCTTC--SSCCCCCHHHHHHHHHHHHHHHHHHHHH-CSEEEECTTC
T ss_pred cCHHHHHHHHhCCcEEEEECCHHHHH----HHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhhc-CCEEEECCCC
Confidence 0 0124677777777653 444111100 0112333 234443334444566664 34577 8888
Q ss_pred cHHHHHHHHHHHHhcc
Q 016625 358 AIEETAAVVLRLYHDR 373 (386)
Q Consensus 358 SIEEtAa~Il~~~~~r 373 (386)
++||++..|++.+..+
T Consensus 160 ~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 160 NPRQLATQILVDIKQT 175 (185)
T ss_dssp CHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988664
No 3
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.0026 Score=55.34 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=68.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----------CCC-----------------------------CCc--
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----------GVE-----------------------------LPK-- 286 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp----------~v~-----------------------------lP~-- 286 (386)
|+|+|.|+||||=++-.||. .|+.+-+---+. +.. +-.
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~ 100 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSY 100 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCCSHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 99999999999999999995 487654321110 000 001
Q ss_pred --ccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHH
Q 016625 287 --SLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEET 362 (386)
Q Consensus 287 --eLf~i--~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEt 362 (386)
.|.+. .+..+|-|+.+++.|.+--..|- ..+.+.+.++.-++..+.++... .+-+|-|+.++||+
T Consensus 101 ~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~e~ 169 (202)
T 3t61_A 101 RDKLRESAPGGLAFVFLHGSESVLAERMHHRT----------GHFMPSSLLQTQLETLEDPRGEV-RTVAVDVAQPLAEI 169 (202)
T ss_dssp HHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH----------SSCCCHHHHHHHHHHCCCCTTST-TEEEEESSSCHHHH
T ss_pred HHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh----------ccCCCHHHHHHHHHhcCCCCCCC-CeEEEeCCCCHHHH
Confidence 11111 11378999999988876334443 12333444544444333444332 34455444999999
Q ss_pred HHHHHHHHhccc
Q 016625 363 AAVVLRLYHDRK 374 (386)
Q Consensus 363 Aa~Il~~~~~r~ 374 (386)
+..|++.+...+
T Consensus 170 ~~~I~~~l~~~~ 181 (202)
T 3t61_A 170 VREALAGLARLA 181 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 4
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.014 Score=53.45 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=45.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh--C-C-----CCcEE-ccCccHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ--N-P-----VWPVI-VTGKAIEETA 363 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k--~-~-----~~pvI-VT~kSIEEtA 363 (386)
.+..|-|+.+++...+-|...++..|.. .+.+.+.+++..-...-.+ . | +--+| +|++++||++
T Consensus 163 ~~~~ifl~A~~e~r~~R~~~~l~~~~~~-------~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~ 235 (252)
T 4e22_A 163 APVKIFLDASSQERAHRRMLQLQERGFN-------VNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVI 235 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHH
Confidence 3456889999998766555555444431 3566776666332221111 1 0 11367 9999999999
Q ss_pred HHHHHHHhccc
Q 016625 364 AVVLRLYHDRK 374 (386)
Q Consensus 364 a~Il~~~~~r~ 374 (386)
..|++++..+.
T Consensus 236 ~~I~~~i~~~~ 246 (252)
T 4e22_A 236 EQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 5
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.44 E-value=0.012 Score=50.62 Aligned_cols=67 Identities=24% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHH----hhCCCCcEE-ccCccHHHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF----AQNPVWPVI-VTGKAIEETAAVVL 367 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf----~k~~~~pvI-VT~kSIEEtAa~Il 367 (386)
.+.+|=|+.+++.+.+-+..|. +.+.+.+++.+..-...+ .+...+-+| .+++++||++..|+
T Consensus 136 ~d~~i~l~a~~e~~~~R~~~r~------------~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~ 203 (208)
T 3ake_A 136 AAHKFYLTASPEVRAWRRARER------------PQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVL 203 (208)
T ss_dssp CSEEEEEECCHHHHHHHHHHTS------------SSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhhc------------ccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHH
Confidence 4578889999998766333332 134566766665433344 232234677 77789999999999
Q ss_pred HHHh
Q 016625 368 RLYH 371 (386)
Q Consensus 368 ~~~~ 371 (386)
+++.
T Consensus 204 ~~~~ 207 (208)
T 3ake_A 204 AHIR 207 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 6
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.31 E-value=0.027 Score=49.21 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=45.0
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHHhhCCCCcEE-ccCccHHHHH
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVI-VTGKAIEETA 363 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~---------~lf~k~~~~pvI-VT~kSIEEtA 363 (386)
+.+|=|+.+++.+.+-+..|+..-|+ ..+.+.+++.+..-. .++... ..-+| ++++++||++
T Consensus 137 ~~vi~l~a~~e~~~~R~~~~~~~r~~-------~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~-d~~~Id~~~~~~ee~~ 208 (219)
T 2h92_A 137 DLKVYMIASVEERAERRYKDNQLRGI-------ESNFEDLKRDIEARDQYDMNREISPLRKAD-DAVTLDTTGKSIEEVT 208 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHCSSSCSCCCT-TCEEEECTTCCHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCc-------ccCHHHHHHHHHHHHHhhhhhhccccccCC-CeEEEECCCCCHHHHH
Confidence 45788888888776643333322232 125667776663221 223332 33577 7778999999
Q ss_pred HHHHHHHhccc
Q 016625 364 AVVLRLYHDRK 374 (386)
Q Consensus 364 a~Il~~~~~r~ 374 (386)
..|++.+..++
T Consensus 209 ~~I~~~l~~~~ 219 (219)
T 2h92_A 209 DEILAMVSQIK 219 (219)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHhccC
Confidence 99999987653
No 7
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.31 E-value=0.013 Score=50.00 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHHhhCCC-CcEEccCccHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQNPV-WPVIVTGKAIEETAAVVLRL 369 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~k~~~-~pvIVT~kSIEEtAa~Il~~ 369 (386)
.++.+|=|+++|+.+.+-...| + .|... .+.+.+..+ .++..+.+. |-+|-++.++||+...|++.
T Consensus 121 ~~d~vi~l~~~~e~~~~Rl~~R----~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~ 188 (197)
T 2z0h_A 121 IPDLTFYIDVDVETALKRKGEL----N-------RFEKR-EFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVRE 188 (197)
T ss_dssp CCSEEEEEECCHHHHHHHC-------C-------CCCCH-HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhcc----C-------cccHH-HHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 3677899999998766533333 1 23332 343333322 334444322 33345678999999999998
Q ss_pred Hhcc
Q 016625 370 YHDR 373 (386)
Q Consensus 370 ~~~r 373 (386)
+...
T Consensus 189 l~~~ 192 (197)
T 2z0h_A 189 VKRR 192 (197)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8654
No 8
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.26 E-value=0.0067 Score=49.76 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=66.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-----------------------------c--------------------cc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANV-----------------------------P--------------------IV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~-----------------------------P--------------------LV 279 (386)
|+|+|.++||||=++-.|...|+.+-.. + ++
T Consensus 4 I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~ 83 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVF 83 (179)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 7899999999999999997778887662 0 00
Q ss_pred CCCCCCc------cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH----HHHHHHHhhCCC
Q 016625 280 MGVELPK------SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL----EFAGRIFAQNPV 349 (386)
Q Consensus 280 p~v~lP~------eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL----~~A~~lf~k~~~ 349 (386)
.++.-|. .++. .+..+|-|+.+++.+.+ |+..-|-+ ..-.+.+.+.+.+ .+....+.+. .
T Consensus 84 dg~~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~----R~~~R~~~----~~~~~~~~~~~r~~~~~~~~~~~~~~~-a 153 (179)
T 3lw7_A 84 DGVRSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYK----RMIERLRS----DDSKEISELIRRDREELKLGIGEVIAM-A 153 (179)
T ss_dssp ECCCCHHHHHHHHHHHC-SCEEEEEEECCHHHHHH----HHHTCC--------CCCHHHHHHHHHHHHHHTHHHHHHT-C
T ss_pred eCCCCHHHHHHHHHHhC-CCcEEEEEECCHHHHHH----HHHhccCC----CCcchHHHHHHHHHhhhccChHhHHHh-C
Confidence 1221111 1111 23368899999877655 44322221 1113445555443 2223334454 2
Q ss_pred CcEEccCccHHHHHHHHHHHHhc
Q 016625 350 WPVIVTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 350 ~pvIVT~kSIEEtAa~Il~~~~~ 372 (386)
.-+|.++.++||++..|.+++..
T Consensus 154 d~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 154 DYIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHH
Confidence 33555555999999999998864
No 9
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.23 E-value=0.0085 Score=50.91 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=70.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeecccc----CCCCC--------------------------Cccccc------
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV----MGVEL--------------------------PKSLFQ------ 290 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLV----p~v~l--------------------------P~eLf~------ 290 (386)
-|+|+|.++||||=++-.|| ..|+..-+.=.+ .+.++ ...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~~ 85 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFV 85 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCEe
Confidence 38999999999999999999 456654322000 00000 000000
Q ss_pred -----cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHH
Q 016625 291 -----VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAA 364 (386)
Q Consensus 291 -----i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa 364 (386)
.+...+|-|+.+++.+.+-...|... + .....+.+.+++-+..-..+|.+. ..-+| ++++++||++.
T Consensus 86 ~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~~-~-----r~~~~~~~~i~~~~~~r~~~y~~~-~~~~Idt~~~~~eev~~ 158 (175)
T 1via_A 86 NVSNLEKAGFCIYLKADFEYLKKRLDKDEIS-K-----RPLFYDEIKAKKLYNERLSKYEQK-ANFILNIENKNIDELLS 158 (175)
T ss_dssp GSTTGGGGCEEEEEECCHHHHTTCCCGGGTT-T-----SCTTCCHHHHHHHHHHHHHHHHHH-CSEEEECTTCCHHHHHH
T ss_pred hhhHHhcCCEEEEEeCCHHHHHHHHhcccCC-C-----CCCcccHHHHHHHHHHHHHHHHhc-CCEEEECCCCCHHHHHH
Confidence 02346888999988765522222100 1 112233566666555555677664 46678 88899999999
Q ss_pred HHHHHHhcc
Q 016625 365 VVLRLYHDR 373 (386)
Q Consensus 365 ~Il~~~~~r 373 (386)
.|++.+...
T Consensus 159 ~I~~~l~~~ 167 (175)
T 1via_A 159 EIKKVIKEG 167 (175)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999998654
No 10
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.11 E-value=0.015 Score=50.69 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=71.1
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCC--------------------------Cccccc------
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVEL--------------------------PKSLFQ------ 290 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp----~v~l--------------------------P~eLf~------ 290 (386)
=|+|+|.|+||||=++-.|| ..|+..-+.--+- +..+ ...+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~ 106 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGGAP 106 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEE
Confidence 38999999999999999999 4576654321000 0000 000100
Q ss_pred ---------cCCCcEEEEecChhHHHHHHHH-HHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHHhhCCCCcEE-ccCcc
Q 016625 291 ---------VDPEKVFGLTINPLVLQSIRKA-RARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVI-VTGKA 358 (386)
Q Consensus 291 ---------i~~~KI~GLTIdperL~~IR~e-Rl~~lGl~~~~~S~YAs-~e~I~~EL~~A~~lf~k~~~~pvI-VT~kS 358 (386)
.....+|-|+.+++.|.+ |-. +...-.+- .+....+ .+.+++-++.-..+|++. .-+| +++++
T Consensus 107 ~~~~~~~~l~~~~~vi~L~~~~e~l~~-Rl~~~~~~Rp~~--~~~~~~~~~~~i~~~~~~r~~~y~~a--d~~Idt~~~s 181 (199)
T 3vaa_A 107 CFYDNMEFMNRTGKTVFLNVHPDVLFR-RLRIAKQQRPIL--QGKEDDELMDFIIQALEKRAPFYTQA--QYIFNADELE 181 (199)
T ss_dssp GSTTHHHHHHHHSEEEEEECCHHHHHH-HHHHTGGGCGGG--TTCCHHHHHHHHHHHHHHHHHHHTTS--SEEEECCCCS
T ss_pred ccHHHHHHHHcCCEEEEEECCHHHHHH-HHhcCCCCCCCc--CCCChhhHHHHHHHHHHHHHHHHhhC--CEEEECCCCC
Confidence 013568889999998865 221 11000100 0111111 345666666666677763 3567 88899
Q ss_pred HHHHHHHHHHHHhcc
Q 016625 359 IEETAAVVLRLYHDR 373 (386)
Q Consensus 359 IEEtAa~Il~~~~~r 373 (386)
+||++..|++.+...
T Consensus 182 ~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 182 DRWQIESSVQRLQEL 196 (199)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 11
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.00 E-value=0.025 Score=47.75 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=42.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH----HH---HHHhhCCCCcEEccCccHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF----AG---RIFAQNPVWPVIVTGKAIEETAAV 365 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~----A~---~lf~k~~~~pvIVT~kSIEEtAa~ 365 (386)
++.+|-|+++++.+.+-...|-..-+-. -.+.+.+++.+.. .+ +.|++...|.+|-+++++||++..
T Consensus 114 ~~~~i~l~~~~e~~~~R~~~R~~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~ 187 (196)
T 1tev_A 114 VSFVLFFDCNNEICIERCLERGKSSGRS------DDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE 187 (196)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHTSSCC------SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHcccccCCCC------CCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 3468899999988766444453211211 1124444433322 11 145553234466334999999999
Q ss_pred HHHHHhc
Q 016625 366 VLRLYHD 372 (386)
Q Consensus 366 Il~~~~~ 372 (386)
|.+.+..
T Consensus 188 i~~~l~~ 194 (196)
T 1tev_A 188 VVQIFDK 194 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
No 12
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.91 E-value=0.011 Score=50.39 Aligned_cols=115 Identities=24% Similarity=0.263 Sum_probs=65.3
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeecccc-------------------C--------------C-----CCCCccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV-------------------M--------------G-----VELPKSL 288 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLV-------------------p--------------~-----v~lP~eL 288 (386)
=|+|+|.|+||||=++-.||+ .|+.+-+.--+ . + ... ..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~~~~-~~~ 91 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHG-CDF 91 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEEECSC-CTT
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEEEech-hhh
Confidence 389999999999999999994 47776543110 0 0 000 111
Q ss_pred ccc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHH-
Q 016625 289 FQV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIFAQNPVWPVI-VTGKAIEET- 362 (386)
Q Consensus 289 f~i-~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs---~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEt- 362 (386)
|.- ....+|=|+.+++.|.+--.+| |... ....+ .+.++.-++....+|.. ..+| ++++++||+
T Consensus 92 ~~~~~~~~vi~L~~~~e~l~~R~~~r----~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~---~~~i~~~~~~~~ev~ 161 (180)
T 3iij_A 92 FPERWFHIVFVLRTDTNVLYERLETR----GYNE---KKLTDNIQCEIFQVLYEEATASYKE---EIVHQLPSNKPEELE 161 (180)
T ss_dssp SCGGGCSEEEEEECCHHHHHHHHHHT----TCCH---HHHHHHHHHHHTTHHHHHHHHHSCG---GGEEEEECSSHHHHH
T ss_pred cchhcCCEEEEEECCHHHHHHHHHHc----CCCH---HHHHHHHHHHHHHHHHHHHHHHcCC---CeEEEcCCCCHHHHH
Confidence 110 1457888999999887633333 2110 00000 01122222333444432 4588 999999999
Q ss_pred --HHHHHHHHhcc
Q 016625 363 --AAVVLRLYHDR 373 (386)
Q Consensus 363 --Aa~Il~~~~~r 373 (386)
+..|++.+...
T Consensus 162 ~~v~~i~~~l~~~ 174 (180)
T 3iij_A 162 NNVDQILKWIEQW 174 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 66677766553
No 13
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.84 E-value=0.016 Score=48.93 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cC-----ceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KG-----YKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G-----~KVAN 275 (386)
|+|.|+++||||=++-.||. .| +.+-+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 89999999999999999994 56 66544
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.67 E-value=0.073 Score=45.18 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=68.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc----------------------------------ccC---------CC--
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP----------------------------------IVM---------GV-- 282 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~P----------------------------------LVp---------~v-- 282 (386)
|+|+|.++||||=++-.|| ..|+++-+.- ++. +-
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~v 91 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGF 91 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcE
Confidence 8999999999999999999 5687765320 000 00
Q ss_pred ---CCCccc---------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHH-------
Q 016625 283 ---ELPKSL---------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGR------- 342 (386)
Q Consensus 283 ---~lP~eL---------f~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA-s~e~I~~EL~~A~~------- 342 (386)
..|..+ + ..+..+|-|+.+++.+.+--..|-.. ...+. +.+.+++.+....+
T Consensus 92 i~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (196)
T 2c95_A 92 LIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGET-------SGRVDDNEETIKKRLETYYKATEPVIA 163 (196)
T ss_dssp EEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHTS-------SSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred EEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCCc-------CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 112221 1 24568999999999876633334211 11232 33344333332221
Q ss_pred HHhhCCC-CcEEccCccHHHHHHHHHHHHhcc
Q 016625 343 IFAQNPV-WPVIVTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 343 lf~k~~~-~pvIVT~kSIEEtAa~Il~~~~~r 373 (386)
.|... + |-+|-++.++||++..|++.+...
T Consensus 164 ~~~~~-~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 164 FYEKR-GIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHH-TCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHhc-CcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 23332 3 334545699999999999988653
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.32 E-value=0.21 Score=43.18 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 235 QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 235 hDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
||-|-.......-=|+|+|.++||||=++-.||. .|+.+-+.
T Consensus 9 ~~~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 9 HHSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp -------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cccccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3444443344433499999999999999999995 68877654
No 16
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.29 E-value=0.045 Score=46.58 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||=++-.|| ..|+.+..-
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 7999999999999999999 467655443
No 17
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.24 E-value=0.14 Score=45.84 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHhhCCCCcEE-ccCccHHHH
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR----------IFAQNPVWPVI-VTGKAIEET 362 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~----------lf~k~~~~pvI-VT~kSIEEt 362 (386)
+.+|-|+.+++.+.+-|..|+..-|. ..+.+.+.+.+.. +. ++... ..-+| ++++++||+
T Consensus 154 d~vi~L~a~~e~~~~R~~~~~~~R~~-------~~~~e~~~~~i~~-R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev 224 (236)
T 1q3t_A 154 ELKIFLVASVDERAERRYKENIAKGI-------ETDLETLKKEIAA-RDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEV 224 (236)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHH-HHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHH-HhhhhhhcccccccccC-CEEEEcCCCCCHHHH
Confidence 45788999999887644344332232 1245666665532 11 22221 22466 777899999
Q ss_pred HHHHHHHHhc
Q 016625 363 AAVVLRLYHD 372 (386)
Q Consensus 363 Aa~Il~~~~~ 372 (386)
+..|++++..
T Consensus 225 ~~~I~~~l~~ 234 (236)
T 1q3t_A 225 VEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 18
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.22 E-value=0.022 Score=47.77 Aligned_cols=42 Identities=5% Similarity=0.081 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhc
Q 016625 330 MDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 330 ~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~ 372 (386)
.+.++.-+.....+|++. .--+| +++.++||++..|++.+..
T Consensus 130 ~~~~~~~~~~r~~~~~~~-a~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 130 REVLEALANERNPLYEEI-ADVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSEEC-----CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHHHHHHHHHHHh
Confidence 455655454445667664 34566 7779999999999998753
No 19
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.10 E-value=0.029 Score=48.98 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=42.3
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHhcc
Q 016625 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 295 KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~~r 373 (386)
.+|.|+.+++.|.+ |+..-+ ..+.+.+.++..++..+.+|.+. ..-+|-|+.++||++..|++.+...
T Consensus 127 ~vv~l~~~~e~l~~----Rl~~R~------~~~~~~~~l~~~~~~~~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 127 DFLHLDGPAEVIKG----RMSKRE------GHFMPASLLQSQLATLEALEPDE-SGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEEECCHHHHHH----HHTTCS------CCSSCGGGHHHHHHHCCCCCTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred EEEEEeCCHHHHHH----HHHhcc------cCCCCHHHHHHHHHHhCCCCCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence 67889999877643 442222 12334555555554444555543 3334545679999999999999754
No 20
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.92 E-value=0.18 Score=43.20 Aligned_cols=43 Identities=9% Similarity=0.231 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 330 MDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 330 ~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
.+.+++.|..+...+.....+.+| +.+ ++||+...|.+++...
T Consensus 144 ~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 144 TAIIEQRLALAREEMAHYKEFDYLVVND-NFDQAVQNLIHIISAE 187 (205)
T ss_dssp SSTHHHHHHHHHHHHTTGGGCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 345666777766655433245677 766 9999999999988653
No 21
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.92 E-value=0.054 Score=45.64 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
|+|+|.|++|||=++-.|+. .|+.+-
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 88999999999999999984 476543
No 22
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.81 E-value=0.087 Score=45.99 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|.|.++||||=++-+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 8999999999999999998 578766544
No 23
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.80 E-value=0.15 Score=42.73 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
|+|.|.++||||=++-.||+ .|+.+-+.
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 89999999999999999995 58877654
No 24
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.79 E-value=0.029 Score=52.41 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=74.3
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeeccccC-----CCCCCc-------------------cccc------------
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM-----GVELPK-------------------SLFQ------------ 290 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp-----~v~lP~-------------------eLf~------------ 290 (386)
=|+|+|.|+||||=++-.||. .|+......-+- +..++. +|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG 129 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGG 129 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCC
Confidence 399999999999999999994 787655432210 111111 0000
Q ss_pred ----------cCCCcEEEEecChhHHHHHHHH---HHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHHhhCCCCcE----
Q 016625 291 ----------VDPEKVFGLTINPLVLQSIRKA---RARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPV---- 352 (386)
Q Consensus 291 ----------i~~~KI~GLTIdperL~~IR~e---Rl~~lGl~~~~~S~Y-As~e~I~~EL~~A~~lf~k~~~~pv---- 352 (386)
...+.+|=|+.+++.|.+-... +-+-|.....+...+ ...+.+++-++.-..+|++. ..-|
T Consensus 130 ~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~a-d~vi~~~~ 208 (250)
T 3nwj_A 130 AVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKA-SARVSLEN 208 (250)
T ss_dssp GGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTS-SEEEEHHH
T ss_pred eecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhC-CEEEEecc
Confidence 0124578899999988763221 111111100000000 01466777777777888774 6666
Q ss_pred -------E-ccCccHHHHHHHHHHHHhcc
Q 016625 353 -------I-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 353 -------I-VT~kSIEEtAa~Il~~~~~r 373 (386)
| +|++++||+++.|++.+...
T Consensus 209 ~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 209 ITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 6 79999999999999998765
No 25
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.79 E-value=0.13 Score=44.78 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=42.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH------H---HHHHhhCCCCcEE-ccCccHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF------A---GRIFAQNPVWPVI-VTGKAIEET 362 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~------A---~~lf~k~~~~pvI-VT~kSIEEt 362 (386)
.+.+|=|+.+++.+.+-|..++..-|.. .+.+.+.+++.. - +.++... .+-+| .++.++||+
T Consensus 141 ~d~~i~l~~~~e~~~~R~~~~l~~rg~~-------~~~~~~~~~i~~R~~~~~~~~~~pl~~~~-~~~~Id~~~~~~~ev 212 (227)
T 1cke_A 141 APVKIFLDASSEERAHRRMLQLQVKGFS-------VNFERLLAEIKERDDRDRNRAVAPLVPAA-DALVLDSTTLSIEQV 212 (227)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC-------------CCCCT-TCEEEETTTSCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCcc-------CCHHHHHHHHHHHHHhhhhhcccCccCCC-CEEEEeCCCCCHHHH
Confidence 4567889999987666444433333431 234555555431 1 1222221 23456 666999999
Q ss_pred HHHHHHHHhcc
Q 016625 363 AAVVLRLYHDR 373 (386)
Q Consensus 363 Aa~Il~~~~~r 373 (386)
...|++.+...
T Consensus 213 ~~~I~~~l~~~ 223 (227)
T 1cke_A 213 IEKALQYARQK 223 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 26
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.72 E-value=0.11 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
|+|.|.++||||=+|-.||+ +|+.+-
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 99999999999999999994 677654
No 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.71 E-value=0.073 Score=45.88 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KVAN 275 (386)
|+|+|.++||||=++-+||.+ |+.+-+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 999999999999999999966 887765
No 28
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.51 E-value=0.19 Score=43.72 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|.|.++||||=++=+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 8999999999999999998 568765543
No 29
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.51 E-value=0.11 Score=43.66 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=64.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeec----------cc---cC--C---------------CCCCcc-ccc-----
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANV----------PI---VM--G---------------VELPKS-LFQ----- 290 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVAN~----------PL---Vp--~---------------v~lP~e-Lf~----- 290 (386)
-|+|.|.++||||=++-.||. .|+++-.. ++ +. + ...... +..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g~ 88 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGI 88 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCCE
Confidence 489999999999999999995 58876331 10 00 0 000000 000
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHH
Q 016625 291 ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETA 363 (386)
Q Consensus 291 ------i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtA 363 (386)
...+.+|=|+.+++.+.+ |+..-+... ...+.+.+.+++-+..-...|.+. ..-+| +++ ++||++
T Consensus 89 ~~~~~l~~~~~vi~l~~~~e~~~~----Rl~~r~~~~--r~~~~~~~~~~~~~~~r~~~~~~~-a~~~Id~~~-~~e~~~ 160 (168)
T 1zuh_A 89 VMHENLKGLGTTFYLKMDFETLIK----RLNQKEREK--RPLLNNLTQAKELFEKRQALYEKN-ASFIIDARG-GLNNSL 160 (168)
T ss_dssp GGCGGGTTSEEEEEEECCHHHHHH----HHCC----------CCTTHHHHHHHHHHHHHHHHT-CSEEEEGGG-CHHHHH
T ss_pred echhHHhcCCEEEEEECCHHHHHH----HHhccCCCC--CCCccCHHHHHHHHHHHHHHHHHH-CCEEEECCC-CHHHHH
Confidence 123468889999987654 432110000 011112444544444344566664 44567 776 999999
Q ss_pred HHHHHHH
Q 016625 364 AVVLRLY 370 (386)
Q Consensus 364 a~Il~~~ 370 (386)
..|++.+
T Consensus 161 ~~I~~~l 167 (168)
T 1zuh_A 161 KQVLQFI 167 (168)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998765
No 30
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.41 E-value=0.11 Score=44.92 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|+|+|.++||||=++=+||..|+++.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 789999999999999999988877643
No 31
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.29 E-value=0.082 Score=46.34 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|+|.|.++||||=++-.||..|+.+-+
T Consensus 7 I~i~G~~GSGKST~~~~L~~lg~~~id 33 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFADLGINVID 33 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 889999999999999999998887654
No 32
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.27 E-value=0.59 Score=40.13 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH----HHH---HhhCCCCc-EEccCccHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA----GRI---FAQNPVWP-VIVTGKAIEETAA 364 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A----~~l---f~k~~~~p-vIVT~kSIEEtAa 364 (386)
++.+|-|+.+++.+.+-...|-..-|.. -.+.+.+++-+... ..+ |+.. +.- +|-++.++||+..
T Consensus 121 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~------~~~~e~~~~r~~~~~~~~~~~~~~~~~~-~~vi~id~~~~~e~v~~ 193 (203)
T 1ukz_A 121 SKFILFFDCPEDIMLERLLERGKTSGRS------DDNIESIKKRFNTFKETSMPVIEYFETK-SKVVRVRCDRSVEDVYK 193 (203)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHHHHHTTHHHHHHHHTT-TCEEEEECSSCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHhccccCCCC------CCCHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEECCCCHHHHHH
Confidence 5678999999987766434443222221 12345554443221 112 3332 332 2345699999999
Q ss_pred HHHHHHhc
Q 016625 365 VVLRLYHD 372 (386)
Q Consensus 365 ~Il~~~~~ 372 (386)
.|.+.+..
T Consensus 194 ~i~~~l~~ 201 (203)
T 1ukz_A 194 DVQDAIRD 201 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998864
No 33
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.00 E-value=0.26 Score=43.52 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|.++||||=++-.|| ..|+.+-..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 8999999999999999999 468877643
No 34
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.96 E-value=0.32 Score=40.69 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|.|+++||||=++-.||+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
No 35
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.95 E-value=0.3 Score=43.60 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=25.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
-|+|+|.++||||=++-.|| ..|+.+-..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 39999999999999999999 568877554
No 36
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.75 E-value=0.42 Score=40.28 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|+|+|.++||||=++-.|| ..|+.+-+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 8999999999999999999 56887654
No 37
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.73 E-value=0.058 Score=45.85 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=66.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCc-------------------------------------
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPK------------------------------------- 286 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp----~v~lP~------------------------------------- 286 (386)
|+|+|.++||||=++-.||. .|+.+-+.=.+- +.+++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~~v~ 84 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVT 84 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCcEEc
Confidence 89999999999999999995 587654321110 111100
Q ss_pred --cccc-cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHH-HHHHHHHhhCCCCcEE-ccCccH
Q 016625 287 --SLFQ-VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREEL-EFAGRIFAQNPVWPVI-VTGKAI 359 (386)
Q Consensus 287 --eLf~-i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA--s~e~I~~EL-~~A~~lf~k~~~~pvI-VT~kSI 359 (386)
..++ ...+.+|-|+.+++.+ .+|+..-+- ...+. +.....+++ ......|.+. ..-+| +++.++
T Consensus 85 ~~~~~~~l~~~~vV~L~~~~e~~----~~Rl~~r~~----r~~~~~~~~~~~i~~~~~~r~~~~~~~-~~~~Idt~~~s~ 155 (184)
T 2iyv_A 85 SPGVRAALAGHTVVYLEISAAEG----VRRTGGNTV----RPLLAGPDRAEKYRALMAKRAPLYRRV-ATMRVDTNRRNP 155 (184)
T ss_dssp SHHHHHHHTTSCEEEEECCHHHH----HHHTTCCCC----CSSTTSCCHHHHHHHHHHHHHHHHHHH-CSEEEECSSSCH
T ss_pred CHHHHHHHcCCeEEEEeCCHHHH----HHHHhCCCC----CCCccCCCHHHHHHHHHHHHHHHHhcc-CCEEEECCCCCH
Confidence 0000 0034677788877654 456532211 11122 223333333 2224456664 45677 777999
Q ss_pred HHHHHHHHHHHhcc
Q 016625 360 EETAAVVLRLYHDR 373 (386)
Q Consensus 360 EEtAa~Il~~~~~r 373 (386)
||++..|++.+..+
T Consensus 156 ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 156 GAVVRHILSRLQVP 169 (184)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888543
No 38
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.62 E-value=0.23 Score=42.16 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|.|.++||||=++-+||+ .|+.+-+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 89999999999999999995 5887654
No 39
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.54 E-value=0.19 Score=46.86 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|+|.|.++||||=++=+||..|+.+-+
T Consensus 78 I~I~G~~GSGKSTva~~La~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKNLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEe
Confidence 899999999999999999988987654
No 40
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.35 E-value=0.37 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
|.|+|.++||||=++=.||..|+.+-
T Consensus 5 i~l~G~~GsGKST~~~~La~lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCccc
Confidence 78999999999999999999887653
No 41
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.25 E-value=0.098 Score=45.57 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred CcEE-ccC-ccHHHHHHHHHHHHhcc
Q 016625 350 WPVI-VTG-KAIEETAAVVLRLYHDR 373 (386)
Q Consensus 350 ~pvI-VT~-kSIEEtAa~Il~~~~~r 373 (386)
.-+| +++ +++||+++.|++.+..+
T Consensus 170 ~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 170 EISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp SEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 3477 888 79999999999999664
No 42
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.59 E-value=0.81 Score=39.80 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHH-HH---HhhCCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 329 EMDYVREELEFAG-RI---FAQNPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 329 s~e~I~~EL~~A~-~l---f~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
+.+.+++.|..++ .+ +... +-++ +++ ++||++..|++++...
T Consensus 151 ~~~~i~~rl~~~~~~~~~~~~~~--~d~vi~n~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 151 KPEEINKRMQELTREMDEADKVG--FNYFIVND-DLARTYAELREYLLGS 197 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT--CSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcc--CcEEEECc-CHHHHHHHHHHHHHHH
Confidence 4567776676664 34 3343 4455 665 9999999999998653
No 43
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.58 E-value=1.6 Score=37.62 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KV 273 (386)
|.|+|.|+||||=++-.|+.. |+.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999964 5543
No 44
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.26 E-value=0.49 Score=40.60 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhh----cCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KV 273 (386)
|+|.|.++||||=++-.||+ .|+.|
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 89999999999999999994 36654
No 45
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=92.23 E-value=0.052 Score=52.57 Aligned_cols=27 Identities=41% Similarity=0.653 Sum_probs=22.5
Q ss_pred CcEEEEc---cCCCCCChhhHHhhh--cCcee
Q 016625 247 ADIILSG---VSRTGKTPLSIYLAQ--KGYKV 273 (386)
Q Consensus 247 ADIVLvG---VSRTsKTPlSiYLA~--~G~KV 273 (386)
.=||.|| |=+|||||+++|||+ +++++
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~ 67 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLKDKRV 67 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHhhcCc
Confidence 4589999 999999999999995 45544
No 46
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.02 E-value=0.96 Score=41.91 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=42.0
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh-C--C-----CCcEE-ccCccHHHHHHHHH
Q 016625 297 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-N--P-----VWPVI-VTGKAIEETAAVVL 367 (386)
Q Consensus 297 ~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k-~--~-----~~pvI-VT~kSIEEtAa~Il 367 (386)
|=||.+++.=.+-|-+++...|. -.+.+.+.+++..=.+.=.. . | +.-+| +|+.++||+.+.|+
T Consensus 150 ifl~A~~e~Ra~Rr~~~l~~~~~-------~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~ 222 (233)
T 3r20_A 150 IFLTASAEERARRRNAQNVANGL-------PDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLL 222 (233)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHH
Confidence 45777776644444444443343 14677777777654433221 1 0 11467 99999999999999
Q ss_pred HHHhcc
Q 016625 368 RLYHDR 373 (386)
Q Consensus 368 ~~~~~r 373 (386)
++++.+
T Consensus 223 ~~i~~~ 228 (233)
T 3r20_A 223 DLVTAQ 228 (233)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 998765
No 47
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.78 E-value=1.1 Score=39.38 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhh---cCCCC-C--------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARS---LGFRD-E--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIE 360 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~---lGl~~-~--------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIE 360 (386)
.++.+=|+++++-...+++.-... +=.+. . .... -+.+.+++-|+.+..-+.....+-+++.|-.+|
T Consensus 98 ~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-~~~e~i~~Rl~~~~~e~~~~~~~d~vivN~~~~ 176 (208)
T 3tau_A 98 AGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-ESMEVVEERMETAKKEIEMMASYDYAVVNDVVA 176 (208)
T ss_dssp TTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC--------CCHHHHHHHHHHHHHHHHGGGSSEEEECSSHH
T ss_pred cCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhccCCEEEECcCHH
Confidence 566777888888888776432110 00000 0 0011 244677777777765333221345663344799
Q ss_pred HHHHHHHHHHhccc
Q 016625 361 ETAAVVLRLYHDRK 374 (386)
Q Consensus 361 EtAa~Il~~~~~r~ 374 (386)
|+...|.+++...+
T Consensus 177 ~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 177 NAVQKIKGIVETEH 190 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 48
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.25 E-value=0.54 Score=42.60 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=41.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHH-HHHHHhhCC-CCcEEccCccHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELEF-AGRIFAQNP-VWPVIVTGKAIEETAAVVLR 368 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~~-A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~ 368 (386)
.++.+|=|+++|+.+.+--..| |-. ...|-+ .....+.+.. -+++.++.+ .|-+|-+++++||+...|++
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R----~~~---~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~ 220 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQ 220 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CCC---ccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 4566888999998775522233 211 123321 2223333332 223334432 24455557899999999999
Q ss_pred HHhcc
Q 016625 369 LYHDR 373 (386)
Q Consensus 369 ~~~~r 373 (386)
.+...
T Consensus 221 ~l~~~ 225 (229)
T 4eaq_A 221 TIIKY 225 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 49
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.73 E-value=0.17 Score=43.64 Aligned_cols=19 Identities=47% Similarity=0.551 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
++|+|+|++|||=|.=.|+
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999988887
No 50
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.26 E-value=0.66 Score=42.04 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=48.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhc--CC-CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSL--GF-RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLR 368 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~l--Gl-~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~ 368 (386)
..+|++=|+||++-+.++|+.-...+ =+ +..-...-.+.+++.+.++.++.-|... .-++|.|-.+|++.+.+..
T Consensus 108 ~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~~~~~~~~~~~--fd~vivNd~l~~a~~~l~~ 185 (197)
T 3ney_A 108 KQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHY--FDLSLVNNGVDETLKKLQE 185 (197)
T ss_dssp HTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCCHHHHHHHHHHHHHHHHHGGG--CSEEEEESCHHHHHHHHHH
T ss_pred hcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccchHHHHHHHHHHHHHHhhccC--CCEEEECCCHHHHHHHHHH
Confidence 36889999999999998874322111 00 1101111123567777776665434332 3455335579999999999
Q ss_pred HHhcc
Q 016625 369 LYHDR 373 (386)
Q Consensus 369 ~~~~r 373 (386)
++...
T Consensus 186 ii~~~ 190 (197)
T 3ney_A 186 AFDQA 190 (197)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 88653
No 51
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.54 E-value=1 Score=44.43 Aligned_cols=124 Identities=19% Similarity=0.310 Sum_probs=72.1
Q ss_pred HHHHHHHHHhCC-CEEEEEcCC---------HHHHHHHHHHHHHcCCCEeecc-h-----------HHHHHHHHHhC---
Q 016625 147 LMVIIKQAAKDG-AMLVYTLAD---------PSMAESAKKACELWGIPSTDVL-G-----------PITEAIASHLG--- 201 (386)
Q Consensus 147 l~~il~~a~~~~-~iV~~Tlvd---------~elr~~l~~~~~~~~i~~vDll-~-----------p~i~~le~~lG--- 201 (386)
+.++|+.+++.| .+++.|=-. ..+++.+....+..|++ +|++ . -++..+.+.+|
T Consensus 92 v~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~-fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~ 170 (416)
T 3zvl_A 92 IPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP-FQVLVATHAGLNRKPVSGMWDHLQEQANEGI 170 (416)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC-CEEEEECSSSTTSTTSSHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 455666666666 466666533 45566677788888886 4543 1 23555556676
Q ss_pred -CCCCCCC--CCCC--------------------------CCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc------
Q 016625 202 -VSPSGLP--RGAP--------------------------GRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK------ 246 (386)
Q Consensus 202 -~~p~~~~--~~~p--------------------------G~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~------ 246 (386)
+.|.... +-.. |+....-++||---.+.+|.+. +-+|..+..
T Consensus 171 ~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~pe~~f~~~~~~~~~~~---~f~p~~~~~~~~~~~ 247 (416)
T 3zvl_A 171 PISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELP---AFDPRTISSAGPLYL 247 (416)
T ss_dssp CCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEECHHHHHSCCCCCCBCCC---SCCGGGCCSCSCSSB
T ss_pred CCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccCcHHhhCCCCcCccccC---CCChhhhcccccccC
Confidence 7763200 0011 2222333778877666666642 222332221
Q ss_pred -----------CcEEEEccCCCCCChhhHHhhh-cCceee
Q 016625 247 -----------ADIILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 247 -----------ADIVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
-=|||+|+|+||||=++--|+. .||.+.
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 1178899999999999999984 555443
No 52
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.03 E-value=5 Score=35.70 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCcEEEEecChhHHHHHHH--------------------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCC
Q 016625 293 PEKVFGLTINPLVLQSIRK--------------------ARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQN--PVW 350 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~--------------------eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~--~~~ 350 (386)
.++.+=|.||++-+.++|+ +||+.-|. -+.+.|++=|..|+.-+... ..+
T Consensus 91 ~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~--------e~~e~i~~Rl~~a~~e~~~~~~~~f 162 (186)
T 1ex7_A 91 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT--------ETEESINKRLSAAQAELAYAETGAH 162 (186)
T ss_dssp HTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC--------SCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHhhccccCC
Confidence 3566777777777766653 35554443 24567777777776544321 123
Q ss_pred cEEccCccHHHHHHHHHHHHhc
Q 016625 351 PVIVTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 351 pvIVT~kSIEEtAa~Il~~~~~ 372 (386)
-.||.|-.+|++...|.+++..
T Consensus 163 D~vIvNddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 163 DKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT
T ss_pred cEEEECcCHHHHHHHHHHHHHh
Confidence 4555567899999999998853
No 53
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.57 E-value=0.24 Score=43.91 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhccc
Q 016625 330 MDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 330 ~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~ 374 (386)
.+.+++.|..+...+.+...+-+| +++ ++||+...|.+++...+
T Consensus 166 ~~~i~~rl~~~~~~~~~~~~~d~vI~n~-~~e~~~~~l~~~i~~~~ 210 (231)
T 3lnc_A 166 SEVVEARLKGAAFEISHCEAYDYVIVNE-DIEETADRISNILRAEQ 210 (231)
T ss_dssp ------CHHHHHHHHTTGGGSSEEEECS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEECc-CHHHHHHHHHHHHHHHh
Confidence 344555555554444332245677 776 89999999999887643
No 54
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.85 E-value=0.36 Score=44.77 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
|+|+|.|++|||=|++-||++|+.+-|
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~~iIs 63 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGHRLIA 63 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCeEEe
Confidence 899999999999999999999976554
No 55
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.79 E-value=0.97 Score=44.55 Aligned_cols=83 Identities=28% Similarity=0.252 Sum_probs=49.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec---------cccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV---------PIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLG 318 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~---------PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lG 318 (386)
|||+|+++||||=|++-||+ .|..+-|. ++.-.-+-|++.-.++.+. ++
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhl---------------------id 101 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHL---------------------LG 101 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEES---------------------SS
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEee---------------------cc
Confidence 89999999999999999994 45443331 2221222244442222111 11
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 319 FRDEI-RSNYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 319 l~~~~-~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
... . ...|...+-.+.+.+..++++.+. +.||+|
T Consensus 102 i~~-~~~e~~s~~~F~~~a~~~i~~i~~~g-~~pIlv 136 (339)
T 3a8t_A 102 EVD-PARGELTPADFRSLAGKAVSEITGRR-KLPVLV 136 (339)
T ss_dssp CBC-GGGCCCCHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ccC-cccCccCHHHHHHHHHHHHHHHHhcC-CeEEEE
Confidence 111 2 345776777777777778888886 666663
No 56
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.46 E-value=0.36 Score=41.09 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
|.|+|.++||||=++-.||.+|+.+-
T Consensus 11 I~i~G~~GsGKST~~~~La~~g~~~i 36 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSWGYPVL 36 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEE
Confidence 88999999999999999997787664
No 57
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.37 E-value=0.86 Score=44.63 Aligned_cols=89 Identities=29% Similarity=0.378 Sum_probs=48.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCCCCCCccccccCCCcE-EEEecChhHHHHHHHHHHhh--cCCCCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMGVELPKSLFQVDPEKV-FGLTINPLVLQSIRKARARS--LGFRDEIR 324 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp~v~lP~eLf~i~~~KI-~GLTIdperL~~IR~eRl~~--lGl~~~~~ 324 (386)
|||+|++++|||-|++-||+ .|..+-| .|.-.| .||+|...+-..-=..+... ++.-+ +.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis---------------~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~-~~ 76 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELIS---------------VDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRD-PS 76 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEE---------------CCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBC-TT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEe---------------cccccccccccccCCCCCHHHHcCCCEEEeccCC-cc
Confidence 78999999999999999995 4432222 111111 12333221111100111111 22222 34
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 325 SNYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 325 S~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
..|+--+-++.-....++++.+. ..|++|
T Consensus 77 e~~s~~~f~~~a~~~i~~i~~~g-~~pilV 105 (316)
T 3foz_A 77 QAYSAADFRRDALAEMADITAAG-RIPLLV 105 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHhCC-CcEEEE
Confidence 56766666665566778888886 677665
No 58
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.00 E-value=1.2 Score=45.10 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee---------ccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN---------VPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLG 318 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN---------~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lG 318 (386)
|+|+|+|++|||=++..|| ..|..+-| +++.-.-+-|.|.-.++.+. ++
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhl---------------------id 63 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV---------------------MN 63 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEES---------------------CS
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhc---------------------CC
Confidence 7899999999999999999 45655444 23333344455553333221 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 319 FRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 319 l~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
.-+ ....|+.-+-++.-....++++.+. ..||+|
T Consensus 64 ~~~-~~~~~s~~~F~~~a~~~i~~i~~~g-~~pilV 97 (409)
T 3eph_A 64 HVD-WSEEYYSHRFETECMNAIEDIHRRG-KIPIVV 97 (409)
T ss_dssp CBC-TTSCCCHHHHHHHHHHHHHHHHTTT-CEEEEE
T ss_pred ccC-hHhHhhHHHHHHHHHHHHHHHHhcC-CCEEEE
Confidence 111 3456777777776777777888886 666665
No 59
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.14 E-value=0.36 Score=41.23 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KVA 274 (386)
|+|.|.++||||=++=.||++ |+++-
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 899999999999999999965 77654
No 60
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.11 E-value=1.1 Score=43.84 Aligned_cols=90 Identities=26% Similarity=0.334 Sum_probs=49.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh--cCCCCCCCC
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS--LGFRDEIRS 325 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~--lGl~~~~~S 325 (386)
|+|+|+++||||=++..|| +.|+.+-|. +.+ ++.+ |++|...+-..-=...... ++..+ ...
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~---------Ds~-qvy~----~~~igTakp~~~e~~gvph~lid~~~-~~~ 72 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISV---------DSA-LIYR----GMDIGTAKPSRELLARYPHRLIDIRD-PAE 72 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEE---------CTT-TTBT----TCCTTTTCCCHHHHHHSCEETSSCBC-TTS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEec---------cch-hhhc----CCCcccCCCCHHHHcCCCEEEeeccC-ccc
Confidence 8999999999999999999 456444433 011 1111 3333221111000011111 22222 345
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCcEEc
Q 016625 326 NYSEMDYVREELEFAGRIFAQNPVWPVIV 354 (386)
Q Consensus 326 ~YAs~e~I~~EL~~A~~lf~k~~~~pvIV 354 (386)
.|...+-.+.+.+..+++..+. ..|++|
T Consensus 73 ~~~~~~F~~~a~~~i~~i~~~g-~~~Ilv 100 (323)
T 3crm_A 73 SYSAAEFRADALAAMAKATARG-RIPLLV 100 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHcC-CeEEEE
Confidence 6777777777777778888876 555554
No 61
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.13 E-value=0.48 Score=42.03 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp 280 (386)
|+++|.|++|||-+..-|+ .+|+||+-+-.-+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 7899999999999988777 4699998666444
No 62
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=82.42 E-value=1.2 Score=43.26 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=30.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp 280 (386)
-|||+|||-+.+|||=|.-.|.+.-.+++|||..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftT 192 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT 192 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccc
Confidence 48999999999999999888887778999999653
No 63
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.81 E-value=0.59 Score=38.80 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
|+|.|.++||||=++-.||+ .|+.+-
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 89999999999999999995 587664
No 64
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.74 E-value=0.54 Score=43.03 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=23.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
|+|+|+++||||=++.-|| +.|+.+-|.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 7899999999999999999 567666543
No 65
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.68 E-value=0.56 Score=39.50 Aligned_cols=27 Identities=41% Similarity=0.456 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|.|+++||||=++-.||. .|+.+-+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 89999999999999999994 5876543
No 66
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.91 E-value=0.82 Score=38.27 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVA 274 (386)
|+|.|.++||||=++-.|| ..|+.+-
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999 5687765
No 67
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.89 E-value=0.71 Score=38.57 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
|||.|.|+||||=++-.||+ .|+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999994 4543
No 68
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.81 E-value=0.66 Score=38.41 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
|+|.|.++||||=++-+||+ .|+.+-+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999996 5877654
No 69
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.64 E-value=0.67 Score=38.39 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~--~G~KVAN 275 (386)
|+|.|+++||||=++-.|++ .|+.+-+
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 78999999999999999997 4655443
No 70
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=80.33 E-value=7.3 Score=34.35 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=43.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CCcEEccCccHHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNP-VWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
.|+.+|=|+++|+...+ |.. ....|-+.+--++=-+.-.++.+++| .|-+|=.+++|||+...|++.+
T Consensus 121 ~PDl~i~Ld~~~e~~~~----R~~-------~~dr~e~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i 189 (197)
T 3hjn_A 121 IPDLTFYIDVDVETALK----RKG-------ELNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREV 189 (197)
T ss_dssp CCSEEEEEECCHHHHHH----HC----------CTTCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCceeecCcChHHHHH----hCc-------CcCccccHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 35678899999998765 321 12245554322111122345666663 2434435689999999999999
Q ss_pred hcc
Q 016625 371 HDR 373 (386)
Q Consensus 371 ~~r 373 (386)
.++
T Consensus 190 ~~r 192 (197)
T 3hjn_A 190 KRR 192 (197)
T ss_dssp SCC
T ss_pred HHH
Confidence 765
No 71
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.03 E-value=0.79 Score=38.42 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=23.5
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN 275 (386)
|+|.|.++||||=++-.||+ +|+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 78999999999999999995 3887654
No 72
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.29 E-value=0.86 Score=38.52 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK----GYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~----G~KVA 274 (386)
|+|+|.++||||=++-.||.+ |+.+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 889999999999999999964 87664
No 73
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=77.94 E-value=4.6 Score=35.75 Aligned_cols=72 Identities=6% Similarity=-0.009 Sum_probs=44.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHH-hhC----CC-----CcEE-ccCccHHHH
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF-AQN----PV-----WPVI-VTGKAIEET 362 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf-~k~----~~-----~pvI-VT~kSIEEt 362 (386)
...|=|+.+++.+.+-+.+|. |+ .+.+...--.+++..++-| +.+ |+ =-+| +++.++||+
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~~---~~------~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eev 188 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMERE---GV------DEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTA 188 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHh---CC------CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHH
Confidence 347889999998887555542 32 1223333333345555443 321 11 1377 999999999
Q ss_pred HHHHHHHHhccc
Q 016625 363 AAVVLRLYHDRK 374 (386)
Q Consensus 363 Aa~Il~~~~~r~ 374 (386)
+..|++++..+.
T Consensus 189 v~~I~~~i~~~~ 200 (201)
T 3fdi_A 189 TDMIIKYIDSRD 200 (201)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999997653
No 74
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=77.86 E-value=3.3 Score=34.22 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecch
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLG 190 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlvd---------~elr~~l~~~~~~~~i~~vDll~ 190 (386)
.+.+.++++.+.+.++ +|+.++.. .++.+.+++.|++.|++++|++.
T Consensus 89 ~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 89 QTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 4556777777766664 55565422 37889999999999999999864
No 75
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=77.44 E-value=4.7 Score=35.80 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHHHHHHHH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPITEAIAS 198 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlvd-------------~elr~~l~~~~~~~~i~~vDll~p~i~~le~ 198 (386)
.+.+.++|+++++.++ +|+.|... .++.+.+++.|+++|+++||+...+.+.++.
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~iD~~~~~~~~~~~ 179 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYET 179 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEEecHHHHHHHHHH
Confidence 4456777777665553 44445431 1567899999999999999999888766543
No 76
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=77.42 E-value=4.7 Score=33.65 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC----------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLAD----------------PSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlvd----------------~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
.+.+.++++.+++.++ +|+.|+.- .++.+.+++.|+++|++++|+...+
T Consensus 100 ~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 165 (204)
T 3p94_A 100 FGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAM 165 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchhhhh
Confidence 3445666777766553 66666521 5778889999999999999987765
No 77
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.42 E-value=1 Score=39.72 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|+|+|.++||||=++-.|| ..|+.+-+
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 8999999999999999999 66887653
No 78
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=76.36 E-value=6.9 Score=33.41 Aligned_cols=53 Identities=4% Similarity=0.007 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC-------------------------HHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLAD-------------------------PSMAESAKKACELWGIPSTDVLGPITEAI 196 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlvd-------------------------~elr~~l~~~~~~~~i~~vDll~p~i~~l 196 (386)
.+.+.++++.+.+.++ +|+.|... .++.+.+++.|++.|++++|+...+....
T Consensus 99 ~~~l~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vD~~~~~~~~~ 177 (240)
T 3mil_A 99 IDNIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQEG 177 (240)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCeEEehHHHHhhcC
Confidence 3456666777766554 66666511 26678888999999999999877766554
No 79
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.02 E-value=0.95 Score=39.68 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|+|+|+++||||=++-.|| ..|+..-+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 8999999999999999999 55776544
No 80
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=75.73 E-value=3.3 Score=34.74 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.0
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN 275 (386)
-|+|+|-+.+|||=|.-.|.+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~~~~~ 52 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTFTPAF 52 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCccc
Confidence 5999999999999998888855443333
No 81
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.70 E-value=1.1 Score=39.14 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
|+|+|.++||||=++-.||+ .|+.+-+.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 89999999999999999994 68876653
No 82
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=75.64 E-value=6.5 Score=33.91 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcC--C---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016625 145 EQLMVIIKQAAKDGA-MLVYTLA--D---------------PSMAESAKKACELWGIPSTDVLGPIT 193 (386)
Q Consensus 145 e~l~~il~~a~~~~~-iV~~Tlv--d---------------~elr~~l~~~~~~~~i~~vDll~p~i 193 (386)
+.+..+++.++..+. +|+.|+. + .++.+.+++.|++.+++++|+..+++
T Consensus 105 ~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~~iD~~~~~~ 171 (209)
T 4hf7_A 105 GNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIPFVNYYQPMV 171 (209)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCCEECSHHHHE
T ss_pred HHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCeEeecHHHHh
Confidence 345666776666664 6666652 0 35777899999999999999987763
No 83
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.60 E-value=1.1 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCc
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~ 271 (386)
|||+|+|+||||-+++.|| ..|.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc
Confidence 7899999999999999999 4553
No 84
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.55 E-value=1.1 Score=39.22 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
|+|.|.++||||=++-.||+ .|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 89999999999999999994 79887665
No 85
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=75.43 E-value=8.5 Score=32.11 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecchH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLGP 191 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tlvd---------~elr~~l~~~~~~~~i~~vDll~p 191 (386)
.+.+.++++.+++.++ +|+.|+.. .++.+.+++.|++.|++++|++..
T Consensus 85 ~~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~ 142 (190)
T 1ivn_A 85 EQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFME 142 (190)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCTHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccHHh
Confidence 3456777777766554 66666521 567889999999999999999743
No 86
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=74.30 E-value=11 Score=34.69 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=44.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHH-HHHHHHhhCCCCcEEccCccHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELE-FAGRIFAQNPVWPVIVTGKAIEETAAVVLRL 369 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~-~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~ 369 (386)
.++.+|=|+++|+.+.+--..| |- ...|-. .....+.+. .-.+++++.++|-+|=.++++||+.+.|.+.
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~ 225 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGR----GE----LDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRA 225 (236)
T ss_dssp CCSEEEEEECCHHHHHHC---------C----CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHH
Confidence 4577899999999877632333 21 123332 122333333 3335666665666664568999999999999
Q ss_pred Hhccc
Q 016625 370 YHDRK 374 (386)
Q Consensus 370 ~~~r~ 374 (386)
+...-
T Consensus 226 l~~~l 230 (236)
T 3lv8_A 226 LQDWL 230 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 87
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=74.23 E-value=14 Score=35.42 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=53.1
Q ss_pred EEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHH-------hCCCEEEEEcCCHHHHH
Q 016625 102 MVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAA-------KDGAMLVYTLADPSMAE 172 (386)
Q Consensus 102 iVSDsTGeT-Ae~v~~AaLaQF~~~~~d~~~~~~~~~~p-~V~t~e~l~~il~~a~-------~~~~iV~~Tlvd~elr~ 172 (386)
+=.+..|.. |+.+++.+....|+ +++..++ .+++.+.+.++++.+. ++--+|+-..-|.+.|.
T Consensus 81 ~~~~diG~~Ka~aa~~~L~~iNP~--------v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~ 152 (292)
T 3h8v_A 81 FQPHQAGLSKVQAAEHTLRNINPD--------VLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARM 152 (292)
T ss_dssp ---CCTTSBHHHHHHHHHHHHCTT--------SEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHH
T ss_pred CChhhcCchHHHHHHHHHHhhCCC--------cEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhh
Confidence 344556654 55555555555665 3444443 5666677777765432 22359999999999999
Q ss_pred HHHHHHHHcCCCEeec
Q 016625 173 SAKKACELWGIPSTDV 188 (386)
Q Consensus 173 ~l~~~~~~~~i~~vDl 188 (386)
.+.+.|.++++|+|+.
T Consensus 153 ~in~~c~~~~~Pli~~ 168 (292)
T 3h8v_A 153 TINTACNELGQTWMES 168 (292)
T ss_dssp HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhCCCEEEe
Confidence 9999999999999874
No 88
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.83 E-value=1.4 Score=39.16 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
|+|.|.++||||=++-.||+ .|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 79999999999999999994 59887665
No 89
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.83 E-value=0.85 Score=41.27 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=+.-.+|+.
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999954
No 90
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=73.54 E-value=1.2 Score=35.62 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
.--|+++|-+++|||=+.-.|.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999988888554
No 91
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=73.23 E-value=8.6 Score=32.03 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016625 144 VEQLMVIIKQAAKDGA-MLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITEAI 196 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~-iV~~Tl--vd-----------~elr~~l~~~~~~~~i~~vDll~p~i~~l 196 (386)
.+.+.++++.+.+.++ +|+.|. .. .++.+.+++.|+++|++++|+...+.+..
T Consensus 116 ~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~~~~~~~~ 182 (216)
T 3rjt_A 116 RDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLL 182 (216)
T ss_dssp HHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcHHHHHHHH
Confidence 4556677777765564 666651 11 35788899999999999999977766543
No 92
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=73.21 E-value=2.6 Score=38.37 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=44.1
Q ss_pred CCCcEEEE-ecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHHhh----CC-CCcEE-ccCccHHHHH
Q 016625 292 DPEKVFGL-TINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQ----NP-VWPVI-VTGKAIEETA 363 (386)
Q Consensus 292 ~~~KI~GL-TIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~-~A~~lf~k----~~-~~pvI-VT~kSIEEtA 363 (386)
.|+.+|=| +++|+.+.+ |.. .+ ...|-+.+ -.+-+. .-.+++++ .+ .|-+| +.++++||++
T Consensus 125 ~PDlti~L~dv~pe~~~~----R~~-~~-----~dr~E~~~-f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 125 KPDLTLFLSTQDVDNNAE----KSG-FG-----DERYETVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp CCSEEEEEECSCCSCGGG----CCS-SS-----CCTTCCHH-HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred CCCEEEEEeCCCHHHHHH----Hhc-cC-----cccccHHH-HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence 46778999 999998753 321 11 23454432 222222 22334433 22 56777 7899999999
Q ss_pred HHHHHHHhccc
Q 016625 364 AVVLRLYHDRK 374 (386)
Q Consensus 364 a~Il~~~~~r~ 374 (386)
+.|.+.+....
T Consensus 194 ~~I~~~i~~~l 204 (216)
T 3tmk_A 194 ALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 93
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=72.97 E-value=1.4 Score=40.28 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVA 274 (386)
|+|.|.++||||=++-.||. .|+.+.
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999995 688765
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.75 E-value=1.3 Score=37.63 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
|+|+|.|+||||=++-.|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999654
No 95
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=72.73 E-value=1.5 Score=35.68 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=+.-.+|+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999954
No 96
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=72.71 E-value=1.2 Score=35.92 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=17.6
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016625 248 DIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA 267 (386)
-|+|+|-+.+|||=|.-.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999998887776
No 97
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=72.61 E-value=1.5 Score=38.95 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=24.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc-Cceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK-GYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~-G~KVAN 275 (386)
=|.|.|.++||||=++-+||.+ |+.+-+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 3789999999999999999977 987766
No 98
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.29 E-value=1.3 Score=37.85 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|.|.++||||=++-.||+
T Consensus 13 I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 99
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=71.69 E-value=2.5 Score=39.56 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=30.1
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+++.+.+++.+--.-..-..--|+|.|.++||||=++-.+|+.
T Consensus 31 ~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 31 KEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp HHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35677777766421111122235999999999999999999943
No 100
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=71.43 E-value=14 Score=34.00 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=51.6
Q ss_pred eCChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016625 104 SDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (386)
Q Consensus 104 SDsTG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~ 182 (386)
.+..| .-|+.+++.+...+|++ ++..++.-=+.+.+.+++++. -+|+.+.-+.+.|..+.+.|.+.+
T Consensus 76 ~~diG~~Ka~~~~~~l~~~np~~--------~v~~~~~~~~~~~~~~~~~~~----DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 76 TEDIDRPKSQVSQQRLTQLNPDI--------QLTALQQRLTGEALKDAVARA----DVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp GGGTTSBHHHHHHHHHHHHCTTS--------EEEEECSCCCHHHHHHHHHHC----SEEEECCSSHHHHHHHHHHHHHTT
T ss_pred hhhCCCHHHHHHHHHHHHHCCCC--------EEEEEeccCCHHHHHHHHhcC----CEEEECCCCHHHHHHHHHHHHHhC
Confidence 33345 35777777777777763 333443222456676666543 489988899999999999999999
Q ss_pred CCEeec
Q 016625 183 IPSTDV 188 (386)
Q Consensus 183 i~~vDl 188 (386)
+|+|+.
T Consensus 144 ~p~i~~ 149 (251)
T 1zud_1 144 TPLITA 149 (251)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 999985
No 101
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=71.25 E-value=1.2 Score=36.56 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
--|+|+|-+.+|||=|.-.|.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999988887543
No 102
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=70.85 E-value=1.8 Score=36.12 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 238 GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 238 G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+...+++.+--|+++|-+++|||=+.-.|++.
T Consensus 13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34455667778999999999999999998854
No 103
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=70.10 E-value=44 Score=27.43 Aligned_cols=132 Identities=13% Similarity=0.185 Sum_probs=65.2
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC--------------------CCCCCccccc--cCCCcEEE
Q 016625 241 PQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM--------------------GVELPKSLFQ--VDPEKVFG 298 (386)
Q Consensus 241 p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp--------------------~v~lP~eLf~--i~~~KI~G 298 (386)
+..-...-|+|||-+.+|||=|.-.|.+..+...++.-.. +.+--..+.. ...-.++=
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 3445556799999999999988888775444332221111 1111111111 11223444
Q ss_pred EecC---hhHHHHHHHHHHhhcCC-----------CCC--------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-cc
Q 016625 299 LTIN---PLVLQSIRKARARSLGF-----------RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VT 355 (386)
Q Consensus 299 LTId---perL~~IR~eRl~~lGl-----------~~~--------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT 355 (386)
|.+| ++.+..+++.-...+.. ..+ .-..-.+.+.+.+++. ...++++. +|+++ ++
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~S 169 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTTLMGDH-PFVIFASN 169 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHHHHTTS-CEEEEECB
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chhhccCC-eeEEEEee
Confidence 5544 44455555433322211 000 0111123455655554 22333666 89998 75
Q ss_pred ---CccHHHHHHHHHHHHhccc
Q 016625 356 ---GKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 356 ---~kSIEEtAa~Il~~~~~r~ 374 (386)
+..|+|.-..|++.+.++.
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHHHh
Confidence 4569999988888876654
No 104
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=69.25 E-value=15 Score=33.29 Aligned_cols=70 Identities=11% Similarity=-0.029 Sum_probs=45.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh-----------CCCCcEE-ccCccHHH
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-----------NPVWPVI-VTGKAIEE 361 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k-----------~~~~pvI-VT~kSIEE 361 (386)
...|=|+.+++.+.+-+.+|. |+ .+.+...--++++..++-|-+ ... -+| ++..++||
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~---~~------~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~d-l~IdT~~l~~ee 207 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD---CI------DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYD-LPINTTKLTLEE 207 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCS-EEEECTTCCHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc---CC------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCe-EEEECCCCCHHH
Confidence 457889999998877444442 33 123344444455566554333 212 377 99999999
Q ss_pred HHHHHHHHHhcc
Q 016625 362 TAAVVLRLYHDR 373 (386)
Q Consensus 362 tAa~Il~~~~~r 373 (386)
++..|++++..+
T Consensus 208 vv~~I~~~i~~~ 219 (223)
T 3hdt_A 208 TAELIKAYIRLK 219 (223)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999753
No 105
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=69.09 E-value=9.5 Score=32.91 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC--------------------HHHHHHHHHHHHHcCCCEeecchH
Q 016625 145 EQLMVIIKQAAKD--G-AMLVYTLAD--------------------PSMAESAKKACELWGIPSTDVLGP 191 (386)
Q Consensus 145 e~l~~il~~a~~~--~-~iV~~Tlvd--------------------~elr~~l~~~~~~~~i~~vDll~p 191 (386)
..+.++|+.+++. + .||+.|... .++++.+++.|++.|++++|+...
T Consensus 114 ~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~~~ 183 (232)
T 3dc7_A 114 GALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRD 183 (232)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecccc
Confidence 3677777776544 2 477766532 779999999999999999999765
No 106
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.85 E-value=1.8 Score=36.74 Aligned_cols=25 Identities=40% Similarity=0.787 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KV 273 (386)
|+|+|.++||||-++--||. .|+++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 89999999999999998883 35554
No 107
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=68.49 E-value=2.3 Score=37.37 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
++|+|.|++|||-+.--|+ .+|++|+-+=.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 7899999999999987776 36888874433
No 108
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.43 E-value=1.7 Score=35.54 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=+.-.+|+.
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 109
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.19 E-value=1.7 Score=37.10 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCCCCCC-HHHHHHHHHHHH-HH---HhhCCCCcEEccCccHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRSNYSE-MDYVREELEFAG-RI---FAQNPVWPVIVTGKAIEETAA 364 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~--~lGl~~~~~S~YAs-~e~I~~EL~~A~-~l---f~k~~~~pvIVT~kSIEEtAa 364 (386)
..++++=|++|++-+.++|+.-.. ..-+..+....... .+.| +.+..|. ++ +.. .+-+++.|-.+|++.+
T Consensus 94 ~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R~~~i-~r~~~~~~~~~~~~~~--~~d~~i~n~~~~~~~~ 170 (180)
T 1kgd_A 94 EQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESL-QRLQKESDILQRTYAH--YFDLTIINNEIDETIR 170 (180)
T ss_dssp HTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHH-HHHHHHHHHHHHHHGG--GCSEEEECSSHHHHHH
T ss_pred HCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhhHHHH-HHHHHHHHHHHHhhhC--CCcEEEECcCHHHHHH
Confidence 467889999999998887642111 01111101112222 2334 4565554 33 222 4566633348999999
Q ss_pred HHHHHHhc
Q 016625 365 VVLRLYHD 372 (386)
Q Consensus 365 ~Il~~~~~ 372 (386)
.|.+++..
T Consensus 171 ~l~~~i~~ 178 (180)
T 1kgd_A 171 HLEEAVEL 178 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 110
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=67.94 E-value=1.8 Score=35.08 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
--|+++|-+.+|||=+.-.|.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999998888543
No 111
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=67.92 E-value=2.3 Score=34.27 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+++|-+++|||=+.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999998888744
No 112
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=67.77 E-value=28 Score=31.21 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CH---HHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EM---DYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVV 366 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YA--s~---e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~I 366 (386)
.|+.+|=|+++|+.+.+-...| |- ...|- +. +++++- -.++.++...|-+|=.++++||+.+.|
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~f~~rv~~~---y~~la~~~~~~~vIDa~~s~eeV~~~I 200 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARAR----GE----LDRIEQESFDFFNRTRAR---YLELAAQDKSIHTIDATQPLEAVMDAI 200 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----SS----CCTTTTSCHHHHHHHHHH---HHHHHHTCTTEEEEETTSCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----ccchhhhHHHHHHHHHHH---HHHHHHHCCcEEEECCCCCHHHHHHHH
Confidence 3577899999999887644444 21 11232 22 233322 223333322466664578999999999
Q ss_pred HHHHhcccc
Q 016625 367 LRLYHDRKH 375 (386)
Q Consensus 367 l~~~~~r~~ 375 (386)
.+.+.....
T Consensus 201 ~~~l~~~l~ 209 (213)
T 4tmk_A 201 RTTVTHWVK 209 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 113
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=67.63 E-value=0.9 Score=39.00 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVA 274 (386)
|+|+|+|+||||=++-.|+. .|++|.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999999883 366653
No 114
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.58 E-value=2.2 Score=41.96 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCc
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~ 271 (386)
|+|+|.|+||||=++.-|| +.|.
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTE
T ss_pred EEEECCCcCcHHHHHHHHHHHcCC
Confidence 8899999999999999999 5563
No 115
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=67.55 E-value=14 Score=29.45 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+++|-+++|||=|.-.|.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999998888743
No 116
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=67.37 E-value=2.1 Score=35.08 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
--|+|+|-+.+|||=|.-.|.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999988887543
No 117
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.30 E-value=2.5 Score=38.57 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
|+|.|.|++||+=|++.|.++|++.-
T Consensus 19 vli~G~SGaGKStlal~L~~rG~~lv 44 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDRGHQLV 44 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCeEe
Confidence 89999999999999999999998743
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=66.74 E-value=2.7 Score=34.80 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=27.3
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
..--|+|||.+++|||=|.-.|++....+.++|-
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~ 39 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPG 39 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCC
Confidence 3456999999999999999988876566666664
No 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.58 E-value=2.3 Score=40.19 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=23.8
Q ss_pred cEEEEccCCCCCChhhHHhh-----hcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLA-----QKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-----~~G~KVAN~P 277 (386)
=|+|+|++++|||=|+.-|| ..|+||.=+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 37899999999999988877 3688776443
No 120
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=66.56 E-value=9.4 Score=32.23 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCC--C-EEEEEcC--------------C---HHHHHHHHHHHHHcCCCEeecchHHH
Q 016625 145 EQLMVIIKQAAKDG--A-MLVYTLA--------------D---PSMAESAKKACELWGIPSTDVLGPIT 193 (386)
Q Consensus 145 e~l~~il~~a~~~~--~-iV~~Tlv--------------d---~elr~~l~~~~~~~~i~~vDll~p~i 193 (386)
+.+.++|+.+++.+ + ||+.|+. + .++.+.+++.|++.|++++|++..+.
T Consensus 96 ~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~ 164 (200)
T 4h08_A 96 KSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLWKVVI 164 (200)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEECHHHHHT
T ss_pred HHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEEecHHhHh
Confidence 44666777765443 3 5666542 1 34567788899999999999877654
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.39 E-value=3.2 Score=38.82 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|||.|+|+||||=++-.|+.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=66.37 E-value=2 Score=35.48 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=24.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
.-|+|.|.++||||=+.-++++..-+ .+.|++
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v 56 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFV 56 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCE
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEE
Confidence 45999999999999999999976322 344554
No 123
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.26 E-value=2.4 Score=38.72 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~--~G~KVAN 275 (386)
|+|+|+|+||||=++-.||+ .|+.+-+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 89999999999999999996 3665443
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=65.30 E-value=5.1 Score=38.01 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
-|+|||-+.+|||=|.-.|.+.. .+.++|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~-~~~~~p 195 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE-IVTTIP 195 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC-CEEEEE
T ss_pred eEEEECCCCccHHHHHHHHhCCC-CCCccc
Confidence 49999999999998888877443 345555
No 125
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.17 E-value=4.1 Score=39.03 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=30.3
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCcee
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKV 273 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~KV 273 (386)
.+++.+.++|.+--.-..-..--|+|.|.++||||=++-.+|+ .|..+
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 64 KEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp HHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3556666666542111111122489999999999999999994 45433
No 126
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=65.17 E-value=18 Score=28.02 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=40.6
Q ss_pred HHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 150 IIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 150 il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+++.+++.. -+|+..=+++++...+...|++++||++.+.+ -..|....|.+.
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~s--k~eLG~a~Gk~~ 73 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVES--MKKLGKACGIEV 73 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESC--HHHHHHHHTCSS
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCCC
Confidence 344444333 25667778899999999999999999999874 478888888764
No 127
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=65.09 E-value=2.2 Score=36.21 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
|+|.|.++||||=++-.||+ .|.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999994 454
No 128
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.07 E-value=2.8 Score=42.09 Aligned_cols=27 Identities=41% Similarity=0.588 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
=|+++|.+++|||=|+.-|| ++|+||+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 48899999999999988777 4689986
No 129
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=64.89 E-value=3.1 Score=34.75 Aligned_cols=24 Identities=33% Similarity=0.330 Sum_probs=20.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.--|+|+|-+.+|||=|.-.|.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999988887744
No 130
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=64.48 E-value=19 Score=32.90 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=48.9
Q ss_pred CChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 016625 105 DGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGI 183 (386)
Q Consensus 105 DsTG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i 183 (386)
+..| .-|+.+++.+...+|++ ++..++.--+.+.+.+++++ --+|+.+.-+.+.+..+.+.|.+.|+
T Consensus 80 ~diG~~Ka~~~~~~l~~~np~~--------~v~~~~~~~~~~~~~~~~~~----~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 80 ATVGQPKVESARDALTRINPHI--------AITPVNALLDDAELAALIAE----HDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTS--------EEEEECSCCCHHHHHHHHHT----SSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred hhcCcHHHHHHHHHHHHHCCCc--------EEEEEeccCCHhHHHHHHhC----CCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 3345 35777777776667753 33333321234555555532 24888899999999999999999999
Q ss_pred CEeec
Q 016625 184 PSTDV 188 (386)
Q Consensus 184 ~~vDl 188 (386)
|+|+.
T Consensus 148 p~i~~ 152 (249)
T 1jw9_B 148 PLVSG 152 (249)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 99984
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=64.31 E-value=2.7 Score=37.03 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
|+|.|.++||||=++-.+|+ .|..
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 89999999999999999994 4543
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=64.25 E-value=2.4 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|+|+|.|+||||=++--||..
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999843
No 133
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=63.72 E-value=5.7 Score=33.13 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=5.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-|+|+|-+.+|||=|.-.|.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999888777643
No 134
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=63.26 E-value=2.9 Score=35.70 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=26.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh-hcCceeeeccc
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA-QKGYKVANVPI 278 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA-~~G~KVAN~PL 278 (386)
++..-. ++|+|.+++|||=++.-|| ..|.+|.=+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 344444 5789999999999999998 45666654443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=63.25 E-value=3.3 Score=37.26 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVA 274 (386)
++|.|.++||||=++-.+|+ .|..+.
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 99999999999999999994 454443
No 136
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=63.15 E-value=1.5 Score=35.90 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=21.9
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhcC
Q 016625 243 NLQKADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 243 ~L~~ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
....--|+|+|-+.+|||=|.-.|.+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4455679999999999999988887543
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=62.57 E-value=3 Score=42.37 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=23.4
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeee
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN 275 (386)
.=|+++|++++|||-|+.-|| ++|+||+=
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 348899999999999876666 57999863
No 138
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=62.53 E-value=2.3 Score=40.40 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
...-|+|.|.++||||=++-.||+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999954
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=62.38 E-value=18 Score=34.37 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
--|+|+|.+++|||=|.--|+..-..+.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~ 200 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe
Confidence 459999999999999888888655667777754
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.29 E-value=2.4 Score=35.76 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-----~G~KVAN 275 (386)
=++|+|.++||||=|...+|+ .|+++.-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 389999999999999988873 3665544
No 141
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=61.82 E-value=1.4 Score=37.80 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.8
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA 267 (386)
.-|+|||-+.+|||=|.-.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999888886
No 142
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=61.58 E-value=12 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+++|-+.+|||=+.-.|.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888843
No 143
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.11 E-value=3 Score=37.52 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
|.|.|.++||||=+|-+||. .|+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 88999999999999999996 7875
No 144
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=61.09 E-value=3 Score=33.94 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceee
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
.-|+++|-+++|||=+.-.|.+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~ 35 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQ 35 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4699999999999999888875444333
No 145
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=61.01 E-value=1.8 Score=35.03 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.6
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016625 248 DIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA 267 (386)
-|+|+|-+.+|||=|.-.|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998887776
No 146
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=60.91 E-value=4.1 Score=26.23 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHhc
Q 016625 358 AIEETAAVVLRLYHD 372 (386)
Q Consensus 358 SIEEtAa~Il~~~~~ 372 (386)
||||+|.+|++-.-+
T Consensus 2 sIEEaA~RIVdaVi~ 16 (26)
T 2drn_C 2 LIEEAASRIVDAVIE 16 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 899999999986543
No 147
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.87 E-value=2.8 Score=37.60 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
|||+|..++||+-.|-.|| .+|+..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 7999999999999999999 567653
No 148
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=60.82 E-value=3.2 Score=34.14 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=22.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
.-|+|||.+++|||=|.--|+..-..+.++|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~ 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC
Confidence 3489999999999998888876545566665
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.76 E-value=2.9 Score=35.42 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.3
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|+|.|++|||=++-.||.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999983
No 150
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=60.51 E-value=0.91 Score=37.46 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=25.8
Q ss_pred HHHHHHHhhCCCCcEE-ccCc---cHHHHHHHHHHHHhcccccC
Q 016625 338 EFAGRIFAQNPVWPVI-VTGK---AIEETAAVVLRLYHDRKHKC 377 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT~k---SIEEtAa~Il~~~~~r~~~~ 377 (386)
+.++++.+++ +|+++ ++.+ .|+|.=..|++.+..++..+
T Consensus 132 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 132 EEGKALAESW-NAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHT-TCEEEECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHh-CCcEEEEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 3567778887 89999 7655 57777777777776665443
No 151
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=60.48 E-value=1.7 Score=36.50 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..--|+|+|-+++|||=|.-.|.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999998888744
No 152
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=60.41 E-value=19 Score=31.99 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=40.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH-HHHHHHH-HHHHHHhhCC-CCcEEccCccHHHHHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD-YVREELE-FAGRIFAQNP-VWPVIVTGKAIEETAAVVLRL 369 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e-~I~~EL~-~A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~~ 369 (386)
|+.+|=|+++|+...+--..| |-. ...|-... ...+-+. .-.+++++.| .|.+|=.++++||+.+.|.+.
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r----~~~---~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~ 197 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQT 197 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhc----CCc---ccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 577899999999887522222 111 11222110 1111111 1234555554 366664568999999999998
Q ss_pred Hhcc
Q 016625 370 YHDR 373 (386)
Q Consensus 370 ~~~r 373 (386)
+.+.
T Consensus 198 i~~~ 201 (205)
T 4hlc_A 198 IIKY 201 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 153
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=60.37 E-value=23 Score=31.73 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHH-HHHHHHhhCC-CCcEEccCccHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELE-FAGRIFAQNP-VWPVIVTGKAIEETAAVVLR 368 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs-~e~I~~EL~-~A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~ 368 (386)
.|+.+|=|+++|+.+.+ |+..-|- ...|-. .....+.+. .-+++.++.+ .|-+|=+++++||+.+.|.+
T Consensus 131 ~PDlvi~Ld~~~e~~~~----Ri~~R~~----~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~ 202 (213)
T 4edh_A 131 RPDLTLVFDLPVEIGLA----RAAARGR----LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDR 202 (213)
T ss_dssp CCSEEEEEECCHHHHHH----HHCCCSS----CCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHH----HHHhcCC----cCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHH
Confidence 35678999999998865 3422221 123332 112222222 2334444543 35566456899999999999
Q ss_pred HHhcc
Q 016625 369 LYHDR 373 (386)
Q Consensus 369 ~~~~r 373 (386)
.+...
T Consensus 203 ~l~~~ 207 (213)
T 4edh_A 203 LLPNL 207 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=60.19 E-value=19 Score=31.61 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=22.8
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
.--|+|||.+++|||=|.-.|...-....+.|
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 34599999999999988877775555556665
No 155
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=60.18 E-value=12 Score=32.02 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAKDGAMLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~~~~iV~~Tlvd-------------~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
+.+.++|+.+.+...+|+.|+.- .++.+.+++.|++.|++++|+...+
T Consensus 117 ~~l~~li~~l~~~~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 177 (218)
T 1vjg_A 117 KNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLL 177 (218)
T ss_dssp HHHHHHHHHHHHHSCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTGGG
T ss_pred HHHHHHHHHHHHhCcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHHhh
Confidence 44556666654324577766532 3578899999999999999998765
No 156
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=59.77 E-value=3 Score=37.17 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~K 272 (386)
|+|+|.++||||=++=-|| ..|+.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 8999999999999999998 33543
No 157
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=59.07 E-value=3.7 Score=41.15 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhh----hc-Cceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QK-GYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~-G~KVA 274 (386)
|+++|.+++|||=++.-|| .+ |+||+
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 7788999999999888777 45 99987
No 158
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=59.06 E-value=7.2 Score=34.55 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA 267 (386)
.-|+|||-+.+|||=|...|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 459999999999998777666
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=59.04 E-value=43 Score=32.48 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=38.8
Q ss_pred eecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhH
Q 016625 186 TDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSI 264 (386)
Q Consensus 186 vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSi 264 (386)
-|++...++.|++........ ..|..-. |..++.+ + .||..-| +||.|.+++|||-+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~gi~TG-----~~~LD~~---~--------gGl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 5 KEVLESAMDLITENQRKGSLE----VTGIPTG-----FVQLDNY---T--------SGFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC----CCSBCCS-----CHHHHHH---H--------CSBCTTCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC----cCcccCC-----ChHHHHH---h--------cCCCCCcEEEEEeCCCCCHHHHHH
Confidence 467778888888765412211 3333222 2222222 2 2455555 6778999999999999
Q ss_pred Hhhhc
Q 016625 265 YLAQK 269 (386)
Q Consensus 265 YLA~~ 269 (386)
-+|..
T Consensus 65 ~ia~~ 69 (338)
T 4a1f_A 65 NMVLS 69 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99854
No 160
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.93 E-value=3.9 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
|.++|-+|||||=++.-||..|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCe
Confidence 6789999999999999999556544
No 161
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.54 E-value=4.2 Score=38.90 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~ 268 (386)
+|..-. ++|.|.++||||-+++.||.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455555 47889999999999999984
No 162
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=58.47 E-value=3.5 Score=36.66 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016625 249 IILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G 270 (386)
|+|+|.+++|||=++-.|+..|
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~~ 44 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKYK 44 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999998888554
No 163
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=58.32 E-value=4.6 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
-++|.|.++||||=+.-.+|+ .|..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999994 4543
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=58.16 E-value=3.5 Score=41.64 Aligned_cols=27 Identities=48% Similarity=0.668 Sum_probs=22.5
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
=|+++|++++|||-|+.-|| .+|+||+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 47889999999999877666 5688885
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.13 E-value=3.3 Score=38.88 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=28.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC--CCCCCcc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM--GVELPKS 287 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp--~v~lP~e 287 (386)
.-|+|.|.++||||=+.-++++..-+ .+.|+|. -..+|..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~~~~~ 67 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSAR-SDRPLVTLNCAALNES 67 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSSCCHH
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCCCChH
Confidence 45999999999999999999975332 3566654 2345553
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.10 E-value=7.4 Score=37.11 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=29.2
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCcee
Q 016625 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKV 273 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~KV 273 (386)
+++++.+.+.+--.--.-..--|+|.|.++||||=+.-.+|+ .|..+
T Consensus 98 ~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 98 EIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp HHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 455555555542110001112499999999999999999994 45444
No 167
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=58.07 E-value=3.8 Score=38.12 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
++|.|.++||||=++-.+|+ .|+++..+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 55669999999999999994 46554433
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=57.42 E-value=3.3 Score=35.32 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
--++|.|.++||||=++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988884
No 169
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.42 E-value=7.9 Score=36.51 Aligned_cols=44 Identities=27% Similarity=0.203 Sum_probs=30.1
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+++.+.++|.+--.-..-.--=|+|.|.++||||=++-.+|+.
T Consensus 25 ~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 25 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp HHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45777777776532210111124899999999999999999953
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.39 E-value=3.2 Score=41.09 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=21.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
-++|.|+++||||-++..||+ .|.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCC
Confidence 399999999999999999994 453
No 171
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=57.36 E-value=1.3 Score=36.50 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 241 PQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 241 p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+.+...--|+|+|-+.+|||=|.-.|.+.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556678999999999999998888754
No 172
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.22 E-value=4.3 Score=36.50 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.5
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-++|.|.++||||=++-++|+
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999994
No 173
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=56.88 E-value=4.8 Score=36.84 Aligned_cols=33 Identities=36% Similarity=0.370 Sum_probs=28.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
--|+|+|-+.+|||=|.-.|.....++.|+|-+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~ 38 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGV 38 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 358999999999999998888766889999843
No 174
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=56.39 E-value=5 Score=37.20 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|+|.|.++||||=++-.||+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 389999999999999999994
No 175
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=56.31 E-value=4.4 Score=36.23 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.1
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+--|||||-+++|||=|...+.+.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhC
Confidence 3445999999999999998877743
No 176
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=56.26 E-value=31 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=37.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++..+..+...|+.++||++.+ +--..|...+|.++
T Consensus 39 ViiA~D~~~~~~~~i~~~c~~~~vp~~~~--~s~~eLG~A~Gk~~ 81 (101)
T 3v7q_A 39 VLLTEDASSNTAKKVTDKCNYYKVPYKKV--ESRAVLGRSIGKEA 81 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEeccccccchhhhcccccccCCCeeee--chHHHHHhhhCccc
Confidence 66677788999999999999999999998 46778999999875
No 177
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=56.18 E-value=2.1 Score=35.20 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhcc
Q 016625 339 FAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 339 ~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r 373 (386)
.++++.+.+ +||++ ++ +..|+|.-..|++.+...
T Consensus 130 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 130 QAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 455666676 78888 64 567899888888877544
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=56.13 E-value=8.3 Score=36.97 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.2
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCcee
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKV 273 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~-~G~KV 273 (386)
.-|+|.|.++||||=+.-.+|+ .|..+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~ 176 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATF 176 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcE
Confidence 4599999999999999999994 45433
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.12 E-value=3.7 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-++|.|.++||||=+.-.+|+
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988884
No 180
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=56.06 E-value=30 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=36.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++..+..+...|++++||++.+ +--..|...+|.++
T Consensus 38 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~--~s~~eLG~a~Gk~~ 80 (101)
T 3on1_A 38 VILSSDAGIHTKKKLLDKCGSYQIPVKVV--GNRQMLGRAIGKHE 80 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEe--CCHHHHHHHhCCcC
Confidence 66677788999999999999999999976 45678999999875
No 181
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.01 E-value=3.6 Score=36.85 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
.-|+|.|.++||||=++-++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 459999999999999999999653
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=55.93 E-value=3.9 Score=35.67 Aligned_cols=44 Identities=7% Similarity=0.191 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHh-hC--CCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 329 EMDYVREELEFAGRIFA-QN--PVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 329 s~e~I~~EL~~A~~lf~-k~--~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
+.+.|++-|..+.+-+. .| ..|-.| |.+ .+|++...|.+++...
T Consensus 141 ~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd-~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 141 TEESLAKRLAAARTDMESSKEPGLFDLVIIND-DLDKAYATLKQALSEE 188 (198)
T ss_dssp CHHHHHHHHHHHHHHTTGGGSTTTCSEEEECS-SHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCceEEEECC-CHHHHHHHHHHHHHHH
Confidence 45666666655543222 20 146677 554 7999999999988653
No 183
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=55.85 E-value=3.6 Score=35.78 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|+|.++||||=++-.|+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999883
No 184
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=55.54 E-value=1.4 Score=35.86 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.--|+++|-+.+|||=|.-.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999998888754
No 185
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=55.25 E-value=2.9 Score=33.25 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=19.6
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+.-|+++|-+.+|||=|.-.|.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999887777643
No 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.05 E-value=5 Score=35.75 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|+|.++||||=++-.||+.
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999953
No 187
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=55.02 E-value=1.8 Score=36.07 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhcccc
Q 016625 338 EFAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDRKH 375 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r~~ 375 (386)
+.++++.+++ +++++ ++ +..|+|.-..|++.+.++..
T Consensus 142 ~~~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 142 TTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHT-TCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3566777787 89998 64 56799988888888876643
No 188
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=54.99 E-value=1.9 Score=38.54 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|.++||||=++-.||+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999953
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=54.81 E-value=5.2 Score=34.67 Aligned_cols=27 Identities=41% Similarity=0.598 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN 275 (386)
|.|+|.|+||||=++-.|+. .|.+|.-
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 78999999999999999984 4766543
No 190
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=54.80 E-value=2.9 Score=35.28 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.2
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
..-|+|+|-+.+|||=|.-.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4569999999999999988888543
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.63 E-value=3.1 Score=40.98 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PL 278 (386)
++|.|.++||||-+++.+|+ .|++|.=+-+
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 68899999999999999994 5666554443
No 192
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=54.57 E-value=17 Score=29.69 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCC--------------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016625 145 EQLMVIIKQAAKDGAMLVYTLAD--------------PSMAESAKKACELWGIPSTDVLGPITE 194 (386)
Q Consensus 145 e~l~~il~~a~~~~~iV~~Tlvd--------------~elr~~l~~~~~~~~i~~vDll~p~i~ 194 (386)
+.+..+++.+. ...+|+.|+.. .++.+.+++.|++.|++++|+...+..
T Consensus 93 ~~l~~~i~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~iD~~~~~~~ 155 (195)
T 1yzf_A 93 ENLETMIHEIG-SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTV 155 (195)
T ss_dssp HHHHHHHHHHC-GGGEEEECCCCCCTTTCTTSCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEEEcCCCCccccchhhhHHHHHHHHHHHHHHHHHhCCeEEehHHHHhh
Confidence 34566666665 33577777641 356788889999999999998877653
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.55 E-value=7.6 Score=36.72 Aligned_cols=26 Identities=54% Similarity=0.727 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|+++|.+++|||=++.-|| ..|.||.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6789999999999888777 4588876
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=54.32 E-value=5.1 Score=38.24 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 6799999999999998777 4577774
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=53.71 E-value=4 Score=33.63 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
.-|+|.|.++||||=+.-++++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 349999999999999999998654
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.68 E-value=6.4 Score=39.63 Aligned_cols=54 Identities=30% Similarity=0.380 Sum_probs=38.0
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeee
Q 016625 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~KVAN 275 (386)
+++.--.=-|+|+|-++|-+ |..|. -=|+|.|+++||||=++--+|+ -|...-+
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~p----rGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQP----KGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 33333334488999998876 55542 1389999999999999999994 4554433
No 197
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.55 E-value=4.8 Score=36.68 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh-hcCcee
Q 016625 242 QNLQKADI-ILSGVSRTGKTPLSIYLA-QKGYKV 273 (386)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSiYLA-~~G~KV 273 (386)
..+.++=| +|+|..++||+=.|-.|| .+|+..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 44555555 568999999999999999 667764
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=53.53 E-value=5.5 Score=34.15 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc---Cceeeec
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK---GYKVANV 276 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~---G~KVAN~ 276 (386)
-|+++|-+++|||-+.-.|++. .+|++.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i 63 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 4899999999999999888832 3566644
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.36 E-value=8.5 Score=32.33 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
=++|+|.++||||=|.--+++ .|+++.-++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 488999999999999888773 376665544
No 200
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.84 E-value=4.3 Score=36.65 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhh-cC
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KG 270 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G 270 (386)
=|+|+|.|+||||=++--|+. .|
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999994 44
No 201
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=52.63 E-value=4.7 Score=34.93 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~ 268 (386)
++..-. ++|+|.+++|||=++.-||.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 454444 57899999999999999884
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.58 E-value=32 Score=33.81 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhh
Q 016625 243 NLQKADI-ILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSiYLA~ 268 (386)
||..-++ +|.|.+++|||=+++-+|.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5666665 6689999999999999984
No 203
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=52.54 E-value=4.8 Score=34.36 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.3
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
-++|.|.++||||=+...+|+ .|+++.-+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 499999999999999988883 345555443
No 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=52.52 E-value=18 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=19.8
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..-|+++|-+.+|||=+.-.|.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999888874
No 205
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=52.39 E-value=13 Score=30.96 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999888875433
No 206
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.10 E-value=4.8 Score=34.48 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~ 268 (386)
++..-+ +.|+|.|++|||=|..-|+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 454444 56899999999999988874
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.07 E-value=3.8 Score=34.82 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEEccCCCCCChhhHH
Q 016625 249 IILSGVSRTGKTPLSIY 265 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiY 265 (386)
++|+|.|++|||=|.--
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57999999999988663
No 208
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=51.92 E-value=5.4 Score=37.08 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
-|+|+|-+.+|||=|---|.....++.|+|
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p 34 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWP 34 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCC
Confidence 489999999999988777775556788888
No 209
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=51.90 E-value=6.3 Score=36.39 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=24.9
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc--eeeeccccC
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGY--KVANVPIVM 280 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~--KVAN~PLVp 280 (386)
-++|.|.++||||=+.-++|+ .|. ...|-+.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 499999999999999999994 443 344555443
No 210
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=51.88 E-value=4.9 Score=34.50 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G 270 (386)
|.|+|.|+||||=++-.|+. .|
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999994 35
No 211
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.74 E-value=7.5 Score=36.67 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhh--hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA--QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA--~~G~KVAN 275 (386)
++|+|.|++|||=+--.|+ ..|+|+|=
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aV 35 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAV 35 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEE
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEE
Confidence 6899999999999887777 34555543
No 212
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=51.43 E-value=58 Score=26.44 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=39.0
Q ss_pred CcEEEEecChhHHHHHHH--HHHhhcCCCCCCCCCCCCHHHHHHHHH----HHHHHHhhCCCCcEE-ccCccHHHHHHHH
Q 016625 294 EKVFGLTINPLVLQSIRK--ARARSLGFRDEIRSNYSEMDYVREELE----FAGRIFAQNPVWPVI-VTGKAIEETAAVV 366 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~--eRl~~lGl~~~~~S~YAs~e~I~~EL~----~A~~lf~k~~~~pvI-VT~kSIEEtAa~I 366 (386)
..+|-|+.+++.+.+--. .|. +- ...+. .+...+++. .....|.+. .-+| +++.++||++..|
T Consensus 95 ~~~i~l~~~~e~~~~R~~~~~r~---~~----r~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~Id~~~~~~~~~~~~i 164 (173)
T 1e6c_A 95 GTVVYLFAPAEELALRLQASLQA---HQ----RPTLT-GRPIAEEMEAVLREREALYQDV--AHYVVDATQPPAAIVCEL 164 (173)
T ss_dssp SEEEEEECCHHHHHHHHHHHHCS---CC----CCCTT-HHHHHHHHHHHHHHHHHHHHHH--CSEEEETTSCHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHhhccCC---CC----CCcCC-CCCHHHHHHHHHHHHHHHHHhC--cEEEECCCCCHHHHHHHH
Confidence 478999999987654212 221 10 11122 122222222 122334442 4588 8889999999999
Q ss_pred HHHHhc
Q 016625 367 LRLYHD 372 (386)
Q Consensus 367 l~~~~~ 372 (386)
++.+..
T Consensus 165 ~~~l~~ 170 (173)
T 1e6c_A 165 MQTMRL 170 (173)
T ss_dssp HHHTTC
T ss_pred HHHhcc
Confidence 998854
No 213
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=51.41 E-value=7.1 Score=35.44 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|+|+|-+++|||=|.-.|...-.++.|+|-+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~ 36 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGV 36 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 48999999999999998888666688888855
No 214
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=51.38 E-value=6.4 Score=37.35 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.3
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
.-|+|.|.++||||=++-.||+ .|.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3599999999999999999994 443
No 215
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=51.37 E-value=1e+02 Score=29.62 Aligned_cols=147 Identities=16% Similarity=0.059 Sum_probs=87.7
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEE-cC----
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYT-LA---- 166 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~T-lv---- 166 (386)
..++.|++|.|.-+.. ..++.-...+..+ ++++..+.||---|.+++.+.|+++.++. +|+++- |-
T Consensus 34 ~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id 107 (285)
T 3l07_A 34 TPKLVAIIVGNDPASK--TYVASKEKACAQV----GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHIN 107 (285)
T ss_dssp CCEEEEEEESCCHHHH--HHHHHHHHHHHHH----TCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSC
T ss_pred CceEEEEEECCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcC
Confidence 4567888898876643 3344433333332 25678888998889999999999986653 555543 22
Q ss_pred CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc
Q 016625 167 DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK 246 (386)
Q Consensus 167 d~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ 246 (386)
...+.+.+. -+. =+|-|+|+ +.-.-..|..|.. +.-.-..=|+.++.. + -+|..
T Consensus 108 ~~~v~~~I~---p~K---DVDG~~~~-N~G~l~~g~~~~~-----------~PcTp~gv~~lL~~~----~----i~l~G 161 (285)
T 3l07_A 108 KNNVIYSIK---PEK---DVDGFHPT-NVGRLQLRDKKCL-----------ESCTPKGIMTMLREY----G----IKTEG 161 (285)
T ss_dssp HHHHHHHSC---GGG---BTTCCSHH-HHHHHHHTCTTCC-----------CCHHHHHHHHHHHHT----T----CCCTT
T ss_pred HHHHHhhCC---ccc---ccccCChh-heeehhcCCCCCC-----------CCCCHHHHHHHHHHh----C----CCCCC
Confidence 233333332 232 34667664 2222234432211 122333334444432 1 26788
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCcee
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKV 273 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KV 273 (386)
+.+++||-|+.==.|+++.|.++|..|
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtV 188 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATV 188 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeE
Confidence 999999999965569999999998754
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.32 E-value=6.6 Score=34.09 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK----GYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~----G~KVAN~PL 278 (386)
|.|+|.|++|||=|+--|+.. |.++.-+++
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 669999999999998777732 444555554
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.32 E-value=5.1 Score=34.12 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
++.+-+ ++|+|.+++|||=++..||
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344444 5688999999999999888
No 218
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=51.25 E-value=5.2 Score=33.21 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.++||||=+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 219
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=51.22 E-value=3.6 Score=35.12 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA 267 (386)
--|+|||-+.+|||=|...|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 459999999999998877776
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=51.22 E-value=9.6 Score=35.88 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.5
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-----hcCcee
Q 016625 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-----QKGYKV 273 (386)
Q Consensus 228 AIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-----~~G~KV 273 (386)
|.+|+-.+.++ ..--++|.|.++||||=|+..+| .+|++|
T Consensus 140 ~~~~i~~~~~~------~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 140 ILDFVEQYPSA------EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp HHHHHHHCSCS------SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHhcccc------CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 44566666543 12459999999999999988877 346665
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=51.05 E-value=5.9 Score=37.35 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~ 268 (386)
+|..-. ++|.|.++||||-+++.||.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344444 67889999999999999983
No 222
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=51.03 E-value=6.7 Score=38.09 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEe-------ecchHHHHHHHHHhCCCCCCCCCCCCC
Q 016625 143 DVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPST-------DVLGPITEAIASHLGVSPSGLPRGAPG 213 (386)
Q Consensus 143 t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~v-------Dll~p~i~~le~~lG~~p~~~~~~~pG 213 (386)
+.++-.+.++++-..+ ++||..=.. .-+.+.+.|+++|||.+ .+++-+...|+..|...-. .+|
T Consensus 68 ~~~~r~~~~~~l~~~~iP~IIvtrg~~--pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~-----~H~ 140 (312)
T 1knx_A 68 TLVEQQQILHNLLKLNPPAIILTKSFT--DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQ-----IHG 140 (312)
T ss_dssp CHHHHTTTHHHHHTTCCSCEEEETTTC--CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEE-----EEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECCCC--CCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcce-----eEE
Confidence 3444445566664333 566654422 22355578999999976 4677777777777742210 111
Q ss_pred CCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016625 214 RNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 214 ~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
.+++. +| .+ |+|.|.|++||+=|++.|..+|++.-
T Consensus 141 -------------~~v~~-----~g-------~g-vli~G~sG~GKStlal~l~~~G~~lv 175 (312)
T 1knx_A 141 -------------VLLEV-----FG-------VG-VLLTGRSGIGKSECALDLINKNHLFV 175 (312)
T ss_dssp -------------EEEEE-----TT-------EE-EEEEESSSSSHHHHHHHHHTTTCEEE
T ss_pred -------------EEEEE-----CC-------EE-EEEEcCCCCCHHHHHHHHHHcCCEEE
Confidence 12211 12 22 99999999999999999999998743
No 223
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.67 E-value=5.1 Score=37.30 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=++-++|+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999943
No 224
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=50.56 E-value=1.4 Score=37.39 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.1
Q ss_pred CCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 243 NLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 243 ~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-..--|+|+|-+.+|||=|.-.|.+.
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 344567999999999999888888754
No 225
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=50.40 E-value=15 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
--|+++|-+.+|||=|.-.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999998888864
No 226
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=50.35 E-value=3.9 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=19.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
++.+-+ +.|+|.+++|||=|..-|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 454444 5689999999999988777
No 227
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.22 E-value=6.6 Score=35.75 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.8
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
-++|.|.++||||=+.-++|+ .|.
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 499999999999999999994 453
No 228
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.15 E-value=7.5 Score=38.74 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..++|+|.++||||=+.-.||+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999965
No 229
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.10 E-value=6.4 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|.++||||=++-+||+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 999999999999999999954
No 230
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.08 E-value=6.5 Score=36.52 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=+.-.+++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999953
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=49.87 E-value=6.6 Score=37.59 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6788999999999887776 4688875
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=49.78 E-value=6.2 Score=37.74 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.8
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccccCCCC
Q 016625 248 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMGVE 283 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp~v~ 283 (386)
-|+|+|..++|||=++.-|+ ..|+||+.+..-|..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 48999999999999888776 4699999988776433
No 233
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=49.77 E-value=2 Score=34.41 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+++|-+.+|||=|.-.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999988888753
No 234
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=49.74 E-value=6.9 Score=36.79 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|.++|.+++|||-++.-|| ..|.||.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6688999999999998887 4577764
No 235
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=49.52 E-value=6.2 Score=32.42 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
-|+++|.+++|||=+.-.|.+.-+.+.+.|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~ 32 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP 32 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSST
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCC
Confidence 389999999999999988886656666665
No 236
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=49.49 E-value=27 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCCEeecchHH
Q 016625 169 SMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 169 elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
++.+.+++.|++.|++++|+...+
T Consensus 163 ~~n~~~~~~a~~~~v~~iD~~~~~ 186 (216)
T 2q0q_A 163 ELARVYSALASFMKVPFFDAGSVI 186 (216)
T ss_dssp THHHHHHHHHHHHTCCEEEGGGTC
T ss_pred HHHHHHHHHHHHcCCcEEchhHhc
Confidence 467889999999999999986544
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.45 E-value=9.3 Score=35.70 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=28.0
Q ss_pred hhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 225 RIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 225 RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
=++.+.++++. |. +. -++|.|.++||||-+...||+.
T Consensus 33 ~~~~L~~~i~~--g~----~~--~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 33 VITTVRKFVDE--GK----LP--HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHT--TC----CC--CEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CC----Cc--eEEEECCCCCCHHHHHHHHHHH
Confidence 35567778875 32 22 2899999999999999999954
No 238
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=49.30 E-value=5.5 Score=33.88 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhccccc
Q 016625 338 EFAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDRKHK 376 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r~~~ 376 (386)
..++++.+++ +|+++ ++ +..|+|.-..|++.+.++...
T Consensus 151 ~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 151 LEASRFAQEN-ELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3456666776 89988 64 557888888888777655433
No 239
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=49.26 E-value=16 Score=30.71 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+++|-+.+|||=+.--|.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999988877754
No 240
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.23 E-value=5.7 Score=35.97 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|+|.++||||=+.-+||+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999954
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=48.73 E-value=5.9 Score=35.68 Aligned_cols=78 Identities=8% Similarity=0.018 Sum_probs=44.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCC-----CCC--------CCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHH
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGF-----RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIE 360 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl-----~~~--------~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIE 360 (386)
++++=|++|++-..+|++. +.. |. +.. -.-..-+.+.|++-+..|+.-+.....+-++|.|-..|
T Consensus 108 G~illLDLD~~~~~~i~~~-l~~-~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~i~Nd~l~ 185 (219)
T 1s96_A 108 GVDVFLDIDWQGAQQIRQK-MPH-ARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFD 185 (219)
T ss_dssp TCEEEEECCHHHHHHHHHH-CTT-CEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEEEECSSHH
T ss_pred CCeEEEEECHHHHHHHHHH-ccC-CEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEEEECcCHH
Confidence 4667777777776666642 110 10 000 00013456778777777765554322455665567889
Q ss_pred HHHHHHHHHHhcc
Q 016625 361 ETAAVVLRLYHDR 373 (386)
Q Consensus 361 EtAa~Il~~~~~r 373 (386)
++...+.+++...
T Consensus 186 ~a~~~l~~ii~~~ 198 (219)
T 1s96_A 186 TALTDLKTIIRAE 198 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888543
No 242
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=48.59 E-value=7.8 Score=35.44 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=26.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
|+|+|-+.+|||=|.-.|.....++.|+|-+
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~ 34 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGV 34 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEECTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccCCCCc
Confidence 8999999999998888888666889998855
No 243
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=48.31 E-value=6.8 Score=38.66 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|+|||.+.+|||=|---|.+...+++|+|..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t 35 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFC 35 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 48999999999998888888766899999964
No 244
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=48.31 E-value=12 Score=30.06 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=18.8
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.-|+|+|-+.+|||=|.-.|.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4599999999999988877764
No 245
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=48.15 E-value=20 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
..-|+++|-+.+|||=|.-.|.+.-+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45699999999999999988885443
No 246
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.97 E-value=4.8 Score=34.84 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999998877743
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=47.75 E-value=6.2 Score=34.95 Aligned_cols=45 Identities=4% Similarity=0.028 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHh-h-CCCCcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 328 SEMDYVREELEFAGRIFA-Q-NPVWPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 328 As~e~I~~EL~~A~~lf~-k-~~~~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
.+.+.|++.|..+.+-+. . ...|..| |++ ..||+.+.+.+++...
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQLKNYLLNS 208 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 355677777766544322 1 0258888 887 6999999888888654
No 248
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=47.73 E-value=5.3 Score=33.59 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999998888875433
No 249
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=47.68 E-value=7.7 Score=33.75 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=24.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
.--|+|+|-+++|||=|.-.|.+.-+.+.++|.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~ 61 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSF 61 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCC
Confidence 345999999999999998888866565665554
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.67 E-value=6.1 Score=33.04 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.++||||=+.-.+|+
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 251
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=47.45 E-value=10 Score=30.67 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-|+++|.+++|||=+.-.|.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999998877743
No 252
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=47.35 E-value=7.8 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
.-|+|||-+.+|||=|.-.|.+..+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCC
Confidence 3599999999999999888875433
No 253
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.00 E-value=7.9 Score=35.50 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhhh-c------Cceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-K------GYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~------G~KVAN~P 277 (386)
=++|.|.+|||||=+.-.+++ . |+.+.-+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 389999999999999999884 2 56555443
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.79 E-value=6.6 Score=34.09 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
.+.+-. ++|+|.|++|||=|.--|+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 445555 5599999999999988887
No 255
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.50 E-value=9.9 Score=33.93 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhh---------hcC-ce--eeecc-ccC
Q 016625 249 IILSGVSRTGKTPLSIYLA---------QKG-YK--VANVP-IVM 280 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA---------~~G-~K--VAN~P-LVp 280 (386)
+++.|..|||||=.++.++ ..| .+ ++|++ |..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~ 52 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI 52 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc
Confidence 5789999999999999864 245 33 58887 553
No 256
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=46.44 E-value=8.8 Score=35.25 Aligned_cols=33 Identities=33% Similarity=0.246 Sum_probs=27.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
--|+|+|-+.+|||=|.-.|......|.|+|-+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~ 36 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGV 36 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 348999999999999998888655888998854
No 257
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.37 E-value=8.5 Score=38.73 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
-++|.|.++||||=+.-.|| ..|+.+..+
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 48999999999999999999 457666543
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=46.35 E-value=8 Score=38.87 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN 275 (386)
|+++|.+++|||-++.-|| ..|.||.=
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 6788999999999988877 45777753
No 259
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.03 E-value=8.1 Score=38.91 Aligned_cols=48 Identities=33% Similarity=0.376 Sum_probs=34.8
Q ss_pred hhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 225 RIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 225 RIeAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
=.++|++-++|-+ |..+. -=|+|.|+++||||=++-.+| +.|...-++
T Consensus 184 l~e~v~~pl~~p~~~~~~g~~~p----rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 184 IREAVELPLVQADLYEQIGIDPP----RGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp HHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhCHHHHHhCCCCCC----ceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3478888888765 54432 128999999999999999999 456544443
No 260
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=46.00 E-value=28 Score=31.21 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhC--C-CEEEEEcC-------------------------CHHHHHHHHHHHHHcCCCEeecchHH
Q 016625 144 VEQLMVIIKQAAKD--G-AMLVYTLA-------------------------DPSMAESAKKACELWGIPSTDVLGPI 192 (386)
Q Consensus 144 ~e~l~~il~~a~~~--~-~iV~~Tlv-------------------------d~elr~~l~~~~~~~~i~~vDll~p~ 192 (386)
.+.+.++|+.+++. + .||+.|.. -.++++.+++.|+++|+++||+...+
T Consensus 144 ~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~ 220 (274)
T 3bzw_A 144 RGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKNVQPDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVT 220 (274)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTEEECCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhh
Confidence 45677777777543 3 35555541 15689999999999999999987643
No 261
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.85 E-value=6.9 Score=34.73 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|.++||||=|.-.||+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999984
No 262
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=45.83 E-value=28 Score=33.72 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcC---------------CHHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016625 145 EQLMVIIKQAAKDGA-MLVYTLA---------------DPSMAESAKKACELWGIPSTDVLGPITEAI 196 (386)
Q Consensus 145 e~l~~il~~a~~~~~-iV~~Tlv---------------d~elr~~l~~~~~~~~i~~vDll~p~i~~l 196 (386)
+.+..+|+++.+.++ +|+.|.. ...+++.+++.|++.++++||+...+.+.+
T Consensus 256 ~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~iDl~~~~~~~~ 323 (375)
T 2o14_A 256 EVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLIDLNVLSSAYF 323 (375)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 346677777766664 5555543 245678899999999999999977765544
No 263
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=45.79 E-value=8.3 Score=31.25 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
--|+|+|.+.+|||=|.-.|.+..+...+.|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~ 39 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG 39 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCC
Confidence 4599999999999999888875444443333
No 264
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=45.66 E-value=8.4 Score=34.58 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
|++-|++++|||=++-.|+ .+|++|.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 8999999999999998887 3577764
No 265
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.44 E-value=54 Score=26.93 Aligned_cols=65 Identities=18% Similarity=-0.005 Sum_probs=37.3
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhccc
Q 016625 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 296 I~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~ 374 (386)
+|-|+.+++.+.+ |+..-+- . .+ +.+.++. +..+.+-+ +. .. +| ++++++||+++.|++.+....
T Consensus 108 ~i~l~~~~e~~~~----R~~~R~~----r-~~-~~~~~~~-~~~~~~~~-~~-~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 108 HFTLIAPLNVVLE----RLRRDGQ----P-QV-NVGTVED-RLNELRGE-QF-QT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp EEEEECCHHHHHH----HHHTC---------C-CHHHHHH-HHHHHTSG-GG-CS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred EEEEeCCHHHHHH----HHHhccc----c-ch-hHHHHHH-HHHhhccc-cc-ce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999887654 3321110 0 11 2233322 22222222 33 45 88 888999999999999997653
No 266
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.38 E-value=7.1 Score=33.78 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCcEE-ccCccHH
Q 016625 329 EMDYVREELEFAGRIFAQNPVWPVI-VTGKAIE 360 (386)
Q Consensus 329 s~e~I~~EL~~A~~lf~k~~~~pvI-VT~kSIE 360 (386)
+....++++..-.++.++. +|+|| |++..-+
T Consensus 144 ~~~~~~~~l~~l~~~~~~~-~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 144 KPAMARSIILQLKRVLAGT-GCTSIFVSQVSVG 175 (247)
T ss_dssp CGGGHHHHHHHHHHHHHHT-TCEEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4556777888778888887 99999 8876644
No 267
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=45.33 E-value=8.3 Score=35.91 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=20.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~ 268 (386)
+|..-. ++|.|.+++|||-+++.||.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 67889999999999999983
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=45.18 E-value=8.1 Score=37.92 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCC-cHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016625 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPL-SEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 266 (386)
Q Consensus 189 l~p~i~~le~~lG~~p~~~~~~~pG~~~~l-d~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSiYL 266 (386)
|...+..|++.+|...--... ... ..- -...---+..++.++. . -++..-. +.|.|.++||||-|++-|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~l~-~~~--~~~~~~~i~TG~~~LD~~Lg--~----GGi~~G~i~~I~GppGsGKSTLal~l 81 (356)
T 3hr8_A 11 LEKALKRIEENFGKGSIMILG-DET--QVQPVEVIPTGSLAIDIATG--V----GGYPRGRIVEIFGQESSGKTTLALHA 81 (356)
T ss_dssp HHHHHHHHHHHHCTTSSCCTT-CCS--CCCCCCEECCSCHHHHHHTS--S----SSEETTEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCceech-hcc--ccCCCceecCCCHHHHHHhc--c----CCccCCcEEEEECCCCCCHHHHHHHH
Confidence 677889999999976421000 000 000 0011112345565553 1 2454444 557799999999999998
Q ss_pred h
Q 016625 267 A 267 (386)
Q Consensus 267 A 267 (386)
|
T Consensus 82 a 82 (356)
T 3hr8_A 82 I 82 (356)
T ss_dssp H
T ss_pred H
Confidence 8
No 269
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=45.17 E-value=9.3 Score=37.10 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
++|+|.|++||+=|...|..+|++.-
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~g~~lv 172 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKRGHRLV 172 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCcee
Confidence 99999999999999999999998643
No 270
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=44.73 E-value=4.9 Score=34.59 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=|+|+|-+++|||-+...|+.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998883
No 271
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=44.70 E-value=12 Score=31.12 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-|+|+|.+.+|||=|.-.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999888887743
No 272
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.57 E-value=7.4 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|+++||||-+.-.||+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999943
No 273
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=44.53 E-value=8 Score=39.74 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~----~G~KVAN 275 (386)
=|+++|..++|||=|+.-||. +|+||+=
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll 134 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 134 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 488999999999999988883 4898863
No 274
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.34 E-value=7.4 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeec
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-~G~KVAN~ 276 (386)
-++|.|.++||||=+.-+||+ .|....-+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i 77 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRI 77 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 599999999999999999994 45444333
No 275
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=43.70 E-value=8.6 Score=31.06 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=25.4
Q ss_pred HHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhccc
Q 016625 339 FAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 339 ~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r~ 374 (386)
.++++...+ +|+++ |+ +..|+|.-..|.+.+.+++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 135 DAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHH-TCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 456666776 88988 64 5568998888888776544
No 276
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=43.63 E-value=6 Score=34.22 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCcEE-c---cCccHHHHHHHHHHHHhccc
Q 016625 338 EFAGRIFAQNPVWPVI-V---TGKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-V---T~kSIEEtAa~Il~~~~~r~ 374 (386)
+.++++.+++ +|+++ | |+..|+|.-..|++.+.++.
T Consensus 139 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 139 EESKTFAQEN-QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHT-TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3456677776 89998 6 56679999999888776543
No 277
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=43.60 E-value=18 Score=30.42 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCC---CEEEEEcCC----H---------------HHHHHHHHHHHHc-CCCEeecchHHH
Q 016625 145 EQLMVIIKQAAKDG---AMLVYTLAD----P---------------SMAESAKKACELW-GIPSTDVLGPIT 193 (386)
Q Consensus 145 e~l~~il~~a~~~~---~iV~~Tlvd----~---------------elr~~l~~~~~~~-~i~~vDll~p~i 193 (386)
+.+..+++.+.+.+ .+|+.|+.. + ++.+.+++.|+++ |++++|+...+.
T Consensus 109 ~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~~iD~~~~~~ 180 (214)
T 2hsj_A 109 NNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVFDCLT 180 (214)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTTCTTEEEECCGGGSB
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHHcCCCEEEEhHHHHh
Confidence 44566666665443 366666542 1 6788999999999 999999987654
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=43.56 E-value=9.9 Score=33.69 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK--GYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~--G~KV 273 (386)
|++-|.+++|||=++-.||++ |+.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 789999999999999999954 6654
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=43.54 E-value=9.3 Score=30.32 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCc-eeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGY-KVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~-KVAN~P 277 (386)
|+++|-+++|||=+.-.|.+... .+.++|
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~ 33 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVP 33 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCCC-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCeeeccCCC
Confidence 89999999999999988885433 244444
No 280
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=43.47 E-value=9.3 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
-|+++|-+.+|||=+.-.|.+.-+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~ 29 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFN 29 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC
Confidence 5899999999999998888754443
No 281
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.37 E-value=8.6 Score=33.35 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
+.|+|.+++|||=|.--|+ ..++.+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~ 31 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCE
Confidence 6899999999999988888 445554443
No 282
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=43.05 E-value=11 Score=34.47 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=17.7
Q ss_pred hhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016625 225 RIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 225 RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..||+.++ +|...++.. ||+.|++++|||=++-.|++
T Consensus 11 ~~~~~~~~----~~~m~~g~~---I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 11 TLEAQTQG----PGSMARGKF---ITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp ----------------CCCCE---EEEECCC---CHHHHHHHHH
T ss_pred hHHHHHhc----CccccCCeE---EEEECCCCCCHHHHHHHHHH
Confidence 34555443 444445543 99999999999999988883
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=42.58 E-value=11 Score=35.42 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KG 270 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G 270 (386)
|.|-|.|+||||=+|-+|++ .|
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 77899999999999999995 46
No 284
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=42.56 E-value=9.6 Score=33.62 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=25.0
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh---cCceeeec
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQ---KGYKVANV 276 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~---~G~KVAN~ 276 (386)
..-=++++|-.++|||=++..||. .|+||+=+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 345578899999999999888874 48888633
No 285
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=42.45 E-value=11 Score=38.21 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|+|.|.++||||=+.-.+|+.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999999954
No 286
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=42.27 E-value=17 Score=35.88 Aligned_cols=44 Identities=27% Similarity=0.203 Sum_probs=29.7
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+++.+.++|.+--.-..-.--=|+|.|.++||||=+.-.+|+.
T Consensus 147 ~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 147 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp HHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35677777776532110111124899999999999999999953
No 287
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.10 E-value=4.7 Score=34.93 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=20.1
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
||..-+ ++|.|.+++|||=+++-+|
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455554 5778999999999999876
No 288
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=41.96 E-value=20 Score=35.28 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=47.2
Q ss_pred HHHHHHHHHHccCCCCccCCccceeEEec--c----ccCC-------HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLF--S----GIDD-------VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 110 TAe~v~~AaLaQF~~~~~d~~~~~~~~~~--p----~V~t-------~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
-|+.+++.+...+|++ +++.+.. | .+.+ .+.+.+++++ --+||-+.-+.+.|..+.+
T Consensus 89 Ka~aaa~~L~~inP~v------~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~----~DlVvd~tDn~~tR~lin~ 158 (340)
T 3rui_A 89 KAELAAASLKRIFPLM------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE----HDIIFLLVDSRESRWLPSL 158 (340)
T ss_dssp HHHHHHHHHHHHCTTC------EEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHH----CSEEEECCSSTGGGHHHHH
T ss_pred HHHHHHHHHHHhCCCC------EEEEEeccccccCcccchhhhhcCCHHHHHhhhcc----CCEEEecCCCHHHHHHHHH
Confidence 5777788788888874 3333321 1 1222 2334444433 2599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016625 177 ACELWGIPSTDV 188 (386)
Q Consensus 177 ~~~~~~i~~vDl 188 (386)
.|.++|+|+|+.
T Consensus 159 ~c~~~~~plI~a 170 (340)
T 3rui_A 159 LSNIENKTVINA 170 (340)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCcEEEe
Confidence 999999999984
No 289
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=41.84 E-value=10 Score=35.37 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.5
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016625 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA----~~G~KVA 274 (386)
--|++.|..++|||=+++-|| ++|++|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 448999999999999977666 5799985
No 290
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.78 E-value=10 Score=38.35 Aligned_cols=55 Identities=31% Similarity=0.387 Sum_probs=39.6
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
+++.--.=.++|+|.++|-+ |..|. -=|+|.|+++||||=++--+| ..|....++
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 33333444588999999876 55542 238999999999999999999 456655444
No 291
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=41.70 E-value=10 Score=35.04 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhc----Cceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK----GYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~----G~KVAN 275 (386)
-++|.|.++||||=+.-.+|+. |.++.-
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~ 70 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 70 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 3899999999999999888853 555443
No 292
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=41.44 E-value=9.1 Score=38.24 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC---C---CCCCc----cccc---------------------cCCCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---G---VELPK----SLFQ---------------------VDPEK 295 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp---~---v~lP~----eLf~---------------------i~~~K 295 (386)
++|.|||.+.+|||=|.--|+..--+++++|+.- . +.++. .+++ +.+-.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 8999999999999988777775545788887532 0 11110 0111 01111
Q ss_pred --EEEEecC---hhHHHHHHHHHHhh---c-CCCC---CCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccC---ccH
Q 016625 296 --VFGLTIN---PLVLQSIRKARARS---L-GFRD---EIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTG---KAI 359 (386)
Q Consensus 296 --I~GLTId---perL~~IR~eRl~~---l-Gl~~---~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~---kSI 359 (386)
++=+.++ .+.|..+.++|..- | ..+. -....-.+. +.++...+.+++. ++++| ||. ..|
T Consensus 238 ~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~-g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALADALARE-GLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHHHHHHTT-TSCEEECCTTTCTTH
T ss_pred hhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHHHHHHhc-CCeEEEEECCCccCH
Confidence 2222222 34566677666531 1 1100 001111111 3445556666676 88888 664 568
Q ss_pred HHHHHHHHHHHhccc
Q 016625 360 EETAAVVLRLYHDRK 374 (386)
Q Consensus 360 EEtAa~Il~~~~~r~ 374 (386)
+|.-..|.+.+....
T Consensus 313 ~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 313 PALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 899999988886543
No 293
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=41.14 E-value=8 Score=31.71 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=9.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+|+|-+.+|||=|.-.|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999998877643
No 294
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=40.88 E-value=9.1 Score=34.67 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|.++||||=|.-.||+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999988884
No 295
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=40.85 E-value=56 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
||..-| +||.|.+++|||=+++-+|. .|.+|+=+-+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 566666 56779999999999998882 3777765443
No 296
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=40.71 E-value=8.9 Score=34.53 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc--Cceee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK--GYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~--G~KVA 274 (386)
=|+|.|..+||||=++-.||++ |+.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3899999999999999999954 66554
No 297
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=40.56 E-value=11 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeeccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY-KVANVPI 278 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~-KVAN~PL 278 (386)
-|+|||.+.+|||=|--.|+.... .+.++|-
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~ 37 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAG 37 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCCC
Confidence 489999999999987777774322 3455543
No 298
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.55 E-value=13 Score=34.37 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|+++||||=|.--||.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999988883
No 299
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=40.43 E-value=7.6 Score=38.11 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.0
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|.|||.+.+|||-|---|.+....++|+|+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~ 34 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFA 34 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCc
Confidence 47899999999998777777555788999864
No 300
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=40.37 E-value=23 Score=32.33 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=40.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHH-HHHHHHhhCC-CCcEEccCccHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELE-FAGRIFAQNP-VWPVIVTGKAIEETAAVVLR 368 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~-e~I~~EL~-~A~~lf~k~~-~~pvIVT~kSIEEtAa~Il~ 368 (386)
.|+.+|=|+++|+.+.+ |+..-|- ...|-.. ....+.+. .-+++.++.+ .|-+|=+++++||+.+.|.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~----Ri~~R~~----~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~ 222 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASA----RRGAVRM----PDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEG 222 (227)
T ss_dssp CCSEEEEEECCSSCGGG----TTTCCCC----C---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHH----HHHhccC----ccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHH
Confidence 35678999999998755 3321121 1234432 12222222 2234455543 35566556899999999998
Q ss_pred HHh
Q 016625 369 LYH 371 (386)
Q Consensus 369 ~~~ 371 (386)
.+.
T Consensus 223 ~l~ 225 (227)
T 3v9p_A 223 VLA 225 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 301
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=40.18 E-value=11 Score=36.58 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCCCCCC-CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHH
Q 016625 188 VLGPITEAIASHLGVSPSGLPRGAPGRN-FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIY 265 (386)
Q Consensus 188 ll~p~i~~le~~lG~~p~~~~~~~pG~~-~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSiY 265 (386)
.|.-.+..|++.+|..... .-|-. +.-....---+..++..+. ..||..-. ++|.|.+++|||-+++-
T Consensus 13 ~l~~~~~~i~~~~~~~~~~----~l~~~~~~~~~~i~TG~~~LD~~Lg------~GGl~~G~ii~I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 13 ALAAALGQIEKQFGKGSIM----RLGEDRSMDVETISTGSLSLDIALG------AGGLPMGRIVEIYGPESSGKTTLTLQ 82 (356)
T ss_dssp HHHHHHHHHHHHHCTTSSC----CTTCCCBCCCCEECCSCHHHHHHTS------SSSEETTSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCce----EccccccccCCcccCCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHH
Confidence 4667778888888865421 00100 0000011111344555542 12455555 57789999999999999
Q ss_pred hhh----cCceeeeccc
Q 016625 266 LAQ----KGYKVANVPI 278 (386)
Q Consensus 266 LA~----~G~KVAN~PL 278 (386)
||. .|.+|+=+-+
T Consensus 83 la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 83 VIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHHTTCCEEEEES
T ss_pred HHHHHHHCCCeEEEEeC
Confidence 882 5777775544
No 302
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=40.14 E-value=12 Score=32.15 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceee
Q 016625 249 IILSGV-SRTGKTPLSIYLA----QKGYKVA 274 (386)
Q Consensus 249 IVLvGV-SRTsKTPlSiYLA----~~G~KVA 274 (386)
|.+.|- .++|||-+|+-|| ++|+||.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVl 34 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTA 34 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 345554 6899999887766 7899997
No 303
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=40.04 E-value=9.8 Score=34.99 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-++|.|.+|||||=+.-.+++
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 304
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=40.03 E-value=9.1 Score=35.02 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~-----~G~KVAN 275 (386)
=|++.|++++|||=++-.|++ .|++|.-
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 389999999999998888883 6777654
No 305
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=39.42 E-value=9.5 Score=38.12 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=18.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
-|.|||.+.+|||=|---|......++|+|.+
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~t 55 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFC 55 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCcc
Confidence 49999999999998877777666799999965
No 306
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=39.18 E-value=12 Score=35.96 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=16.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|.|+|+|++|||=|.--||
T Consensus 132 i~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999877666
No 307
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.02 E-value=22 Score=33.41 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=41.1
Q ss_pred EEEEccCCCCCChhhHHh----hhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016625 249 IILSGVSRTGKTPLSIYL----AQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 314 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYL----A~~G~KVAN~PLVp--------~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl 314 (386)
+|.-|-.++|||-++.-| |++|+||.=|=+=| +.++.....++ ...+.++.+||+...+--.+++
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v-~~~l~~~~~d~~~~~~~~~~~~ 93 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI-TENLYAVEIDPEVAMEEYQAKL 93 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE-ETTEEEEECCHHHHHHHHHHHC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC-CCCceeeccChHHHHHHHHHHH
Confidence 566688999999987655 57899995443333 33333332222 2357888999988765444443
No 308
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=38.91 E-value=16 Score=30.72 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.-|+++|-+.+|||=|.-.|.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4599999999999999888864
No 309
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=38.77 E-value=10 Score=31.63 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
-|+|||.|++|||=|.-.|+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999998887774
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.76 E-value=6.7 Score=34.18 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
+.|+|.|+||||=|.--|+ ..||++..|=+
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 6799999999999887776 34777765543
No 311
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.62 E-value=12 Score=37.74 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=33.7
Q ss_pred hhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 226 IEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 226 IeAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
.++|++-++|-+ |..+. -=|+|.|+++||||=++--+| +.|...-++
T Consensus 194 ~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 194 VEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp HHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 367888888765 44322 238999999999999999999 456544433
No 312
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=38.57 E-value=24 Score=34.74 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHH
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQS 308 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp--------~v~lP~eLf~i~~~KI~GLTIdperL~~ 308 (386)
++.-|-.++|||-+|.-|| +.|+||.=+=. | ++++.....++. .-+.++.|||+...+
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v~-~~L~~~eid~~~~~~ 74 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQIA-PNLEVVQFQSSVLLE 74 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEEE-TTEEEEECCHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCccccc-ccccccccCHHHHHH
Confidence 4567888999999886665 78999976655 5 344433333332 458899999987655
No 313
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=38.39 E-value=12 Score=31.59 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.8
Q ss_pred ccCCCCCChhhHHhh----hcCceeeeccccC
Q 016625 253 GVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (386)
Q Consensus 253 GVSRTsKTPlSiYLA----~~G~KVAN~PLVp 280 (386)
+-.++|||-+++.|| ++|+||.=+=+=|
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456899999988776 6899987554433
No 314
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=38.39 E-value=10 Score=34.56 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcCc-EEEEccCCCCCChhhHHhh-----hcCceee
Q 016625 244 LQKAD-IILSGVSRTGKTPLSIYLA-----QKGYKVA 274 (386)
Q Consensus 244 L~~AD-IVLvGVSRTsKTPlSiYLA-----~~G~KVA 274 (386)
+..-+ ++|+|.+++|||=++.-|| +.|.+|.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 33333 5689999999999998776 2376663
No 315
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.37 E-value=13 Score=34.06 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~PL 278 (386)
|.+.|-.++|||-+++-|| ++|+||.=|=+
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555999999999887655 78999975433
No 316
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=38.04 E-value=11 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|.|+|+|++|||=|.-=||
T Consensus 105 i~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6789999999999887777
No 317
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.00 E-value=13 Score=35.94 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 189 l~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
|...+..|++.+|...-......+ +.-....---+..++..+. .-+|..-. ++|.|.++||||-+++-||
T Consensus 12 ~~~~~~~i~~~~~~~~~~~l~~~~---~~~~~~i~TG~~~LD~~Lg------~GGl~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 12 LELAMAQIDKNFGKGSVMRLGEEV---RQPISVIPTGSISLDVALG------IGGLPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp HHHHHHHHHHHHCTTSSCCTTCCC---CCCCCEECCSCHHHHHHTS------SSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCceeccccc---cccCCccccCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHHHH
Confidence 566777888888765311000000 0000011112345555552 13555555 6778999999999999988
Q ss_pred ----hcCceeeeccc
Q 016625 268 ----QKGYKVANVPI 278 (386)
Q Consensus 268 ----~~G~KVAN~PL 278 (386)
..|.+|+=+-+
T Consensus 83 ~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 83 ANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHTTCCEEEEES
T ss_pred HHHHhCCCeEEEEEC
Confidence 24667664443
No 318
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=38.00 E-value=15 Score=33.46 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
-|-|.|-.+||||=.|=+|+.+|+.|-+-=
T Consensus 11 ~iglTGgigsGKStv~~~l~~~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAARGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEECc
Confidence 489999999999999999999999887643
No 319
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=37.82 E-value=10 Score=37.56 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
++..-. +.|+|.|+||||-|++-||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 454444 5688999999999999776
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.69 E-value=39 Score=27.47 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=40.3
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEEccCccHHHHHHHHHHHHhcc
Q 016625 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 294 ~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~~~r 373 (386)
..+|-|+.+++.+. +|+..-+ .. +... ...+.+++-+......|.+ ..+ +|.++.++||++..|++.+...
T Consensus 94 ~~~i~l~~~~e~~~----~R~~~r~-~r-~~~~-~~~~~i~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~~i~~~l~~~ 164 (168)
T 2pt5_A 94 GTTVFIDIPFEVFL----ERCKDSK-ER-PLLK-RPLDEIKNLFEERRKIYSK-ADI-KVKGEKPPEEVVKEILLSLEGN 164 (168)
T ss_dssp SEEEEEECCHHHHH----HHCBCTT-CC-BGGG-SCGGGTHHHHHHHHHHHTT-SSE-EEECSSCHHHHHHHHHHHHHTS
T ss_pred CEEEEEECCHHHHH----HHHhCCC-CC-CCCc-chHHHHHHHHHHHHHHHHh-CCE-EECCCCCHHHHHHHHHHHHHhc
Confidence 57999999998754 4442111 00 0100 1133444433333344543 243 3355589999999999998764
Q ss_pred c
Q 016625 374 K 374 (386)
Q Consensus 374 ~ 374 (386)
.
T Consensus 165 ~ 165 (168)
T 2pt5_A 165 A 165 (168)
T ss_dssp C
T ss_pred c
Confidence 3
No 321
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=37.31 E-value=14 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 244 LQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+.+.-|+++|-+.+|||=|.-.|.+.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999888744
No 322
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=37.25 E-value=7.7 Score=32.93 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCcEE-c------------------------cCccHHHHHHHHHHHHh
Q 016625 326 NYSEMDYVREELEFAGRIFAQNPVWPVI-V------------------------TGKAIEETAAVVLRLYH 371 (386)
Q Consensus 326 ~YAs~e~I~~EL~~A~~lf~k~~~~pvI-V------------------------T~kSIEEtAa~Il~~~~ 371 (386)
+|++-.-|..||..|-+...+. +..|| | ..++++|+|..|.+++.
T Consensus 84 ~y~~S~wc~~El~~~~~~~~~~-~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~ia~~l~~lvr 153 (154)
T 3h16_A 84 HFFKKEWPQKELDGLFQLESSG-RSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDEIVADLMAIIR 153 (154)
T ss_dssp HHHTTCCCHHHHHHHTCCCTTS-CCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHHHHHHHHHHHHC
T ss_pred chhcChHHHHHHHHHHHHHhcC-CCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHHHHHHHHHHHhc
Confidence 4555556899999886644333 33344 3 56789999999998874
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=37.20 E-value=14 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+++|-+++|||=+.-.|.+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3589999999999999988885433
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=36.80 E-value=16 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
--|+++|-+.+|||=|.-.|.+.-+.....|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~ 34 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 34 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC
Confidence 3589999999999999888875444333333
No 325
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.79 E-value=16 Score=38.47 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..++|+|.++||||=++-.||+.
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999965
No 326
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=36.79 E-value=14 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=26.2
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCcccccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQV 291 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp----~v~lP~eLf~i 291 (386)
|.|-|.++||||-++-.||. .||.+-+==++- +..++.+.|+-
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~ 64 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRL 64 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC---------
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHH
Confidence 78899999999999999995 687766533332 44455555543
No 327
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=36.57 E-value=9.1 Score=31.51 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.4
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcC
Q 016625 241 PQNLQKADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 241 p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
......--|+|+|.+.+|||=|.-.|.+..
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCC
Confidence 334455679999999999999988887543
No 328
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=36.51 E-value=11 Score=34.63 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.1
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCce
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ----KGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~----~G~K 272 (386)
=|++.|++++|||-++-.|++ .|++
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 399999999999999999884 4555
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=36.43 E-value=14 Score=29.40 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
--|+++|-+.+|||=+.-.|.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999988777443
No 330
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=36.36 E-value=12 Score=33.72 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|.++||||-+.-.+|+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999954
No 331
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=36.29 E-value=1.6e+02 Score=26.10 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=40.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH----------H---hhCCCCcEEccCcc
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI----------F---AQNPVWPVIVTGKA 358 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~l----------f---~k~~~~pvIVT~kS 358 (386)
.++.+|=|+++|+.+.+-...| |-+. ..+-+.+ ..+.|....+- | .+. .|-+|-++.+
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R----~r~~---~~~~~~~-~~~~l~~~~~~~~~~~~v~~~y~~~~~~-~~~~Id~~~~ 244 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLR----GRNE---EQGIPLE-YLEKLHYKHESWLLHRTLKTNFDYLQEV-PILTLDVNED 244 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCGG---GTTCCHH-HHHHHHHHHHHHHTTCCCCCSCGGGGGS-CEEEEECCSC
T ss_pred CCCeEEEEECCHHHHHHHHHhc----CCcc---ccCccHH-HHHHHHHHHHHHHhhccchhhhhhhccC-CEEEEECCCC
Confidence 3567999999999987644444 2110 1122322 22233222222 2 122 2445524459
Q ss_pred HHHHHHHHHHHHhc
Q 016625 359 IEETAAVVLRLYHD 372 (386)
Q Consensus 359 IEEtAa~Il~~~~~ 372 (386)
+||+++.|++.+..
T Consensus 245 ~eev~~~I~~~l~~ 258 (263)
T 1p5z_B 245 FKDKYESLVEKVKE 258 (263)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=36.27 E-value=12 Score=35.29 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|.|+|.|+||||-++--|+
T Consensus 34 i~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999998877
No 333
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.07 E-value=12 Score=35.42 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|||++++|||-|.--||
T Consensus 103 i~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6699999999999887776
No 334
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=36.01 E-value=9.5 Score=32.15 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4699999999999998877775433
No 335
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=35.81 E-value=14 Score=39.25 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=23.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc----Cceeee
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK----GYKVAN 275 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~----G~KVAN 275 (386)
=|+|.|.|+||||=++-.||++ |+++..
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3999999999999999999954 876543
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=35.68 E-value=14 Score=31.14 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+|||.+++|||=|.-.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999998888743
No 337
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.66 E-value=14 Score=30.93 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||-|.-.|.+..+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5699999999999999988875433
No 338
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.57 E-value=12 Score=33.45 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|.++||||-+.-.+|+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 999999999999999999854
No 339
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=35.49 E-value=12 Score=34.50 Aligned_cols=20 Identities=35% Similarity=0.197 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.+|||||=+.-.+++
T Consensus 47 ~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998883
No 340
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=35.39 E-value=15 Score=30.69 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4699999999999999988875443
No 341
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.26 E-value=12 Score=33.67 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
++|.|.++||||=+...+|+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999954
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=35.07 E-value=1.8e+02 Score=23.65 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHHhhCCCCcEEccCccHHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQNPVWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~k~~~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
.++.+|-|+.+++.+.+ |+..-+ .+. .+.+.+.+... ++.......|-+|-++.++||++..|.+.+
T Consensus 122 ~~d~vi~l~~~~e~~~~----Rl~~r~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l 189 (195)
T 2pbr_A 122 KPDITLLLDIPVDIALR----RLKEKN-------RFE-NKEFLEKVRKGFLELAKEEENVVVIDASGEEEEVFKEILRAL 189 (195)
T ss_dssp CCSEEEEEECCHHHHHH----HHHTTT-------CCC-CHHHHHHHHHHHHHHHHHSTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHH----HhhccC-------ccc-hHHHHHHHHHHHHHHHhhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 35679999999976544 442111 122 22333333221 122222113445545789999999999988
Q ss_pred hc
Q 016625 371 HD 372 (386)
Q Consensus 371 ~~ 372 (386)
..
T Consensus 190 ~~ 191 (195)
T 2pbr_A 190 SG 191 (195)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 343
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=35.06 E-value=43 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCEeecch
Q 016625 169 SMAESAKKACELWGIPSTDVLG 190 (386)
Q Consensus 169 elr~~l~~~~~~~~i~~vDll~ 190 (386)
++.+.+++.|++.|++++|+..
T Consensus 177 ~~~~~~~~~a~~~~v~~iD~~~ 198 (232)
T 3dci_A 177 RLAPLYRKLAAELGHHFFDAGS 198 (232)
T ss_dssp THHHHHHHHHHHHTCEEEEGGG
T ss_pred HHHHHHHHHHHHhCCeEEcchH
Confidence 5788999999999999999753
No 344
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=35.03 E-value=15 Score=28.80 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+++|-+++|||=+.-.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999998888744
No 345
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=34.68 E-value=89 Score=24.88 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=48.9
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCc----cCCccc---eeEEeccccCCHHHHHHHHHHHHhCCCEEEEEc--C
Q 016625 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCL----VDRNCA---VNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTL--A 166 (386)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~----~d~~~~---~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tl--v 166 (386)
+.+.+.|| |+|..|..+++.+... ++.. +|.... -.+.-+|.+. .+.+.+++++..- -.|+-++ .
T Consensus 3 ~~~~vlIi--GaG~~g~~l~~~l~~~-~g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~i--d~viia~~~~ 76 (141)
T 3nkl_A 3 AKKKVLIY--GAGSAGLQLANMLRQG-KEFHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCI--STVLLAVPSA 76 (141)
T ss_dssp CCEEEEEE--CCSHHHHHHHHHHHHS-SSEEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTC--CEEEECCTTS
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHhC-CCcEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCC--CEEEEeCCCC
Confidence 34566666 5688889999987654 2211 111100 0122234444 4566666654322 2344444 3
Q ss_pred CHHHHHHHHHHHHHcCCCEeec
Q 016625 167 DPSMAESAKKACELWGIPSTDV 188 (386)
Q Consensus 167 d~elr~~l~~~~~~~~i~~vDl 188 (386)
+.+.++.+.+.|..+|+.+.-+
T Consensus 77 ~~~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCeEEEC
Confidence 5677777888899999987644
No 346
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.63 E-value=11 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|.+-|-.++|||=++.-|| ++|+||.=|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4557889999999887766 679999543
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.54 E-value=13 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~-~G~ 271 (386)
|-|+|.++||||=++=.|+. .|.
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhch
Confidence 67999999999999999995 574
No 348
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.49 E-value=16 Score=37.28 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=37.7
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 218 ld~~YF~RIeAIEFAlkhDD-----G~~p~~L~~ADIVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|++.--.=.|+|+|-++|-+ |..+. -=|+|.|+++||||=++--+| ..|...-+
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 44444445578888888865 43321 238999999999999999999 44544433
No 349
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.95 E-value=13 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=27.8
Q ss_pred hhhhhhhhhhCC--CCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016625 225 RIEAIEFTIKQD--DGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 225 RIeAIEFAlkhD--DG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
=++.+.++++.- .|..+ + -++|+|.++||||=|.-.+|+
T Consensus 33 ~~~~l~~~i~~~~~~~~~~----~-~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVL----D-HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCC----C-CEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC----C-eEEEECCCCCcHHHHHHHHHH
Confidence 356777777542 12221 2 289999999999999999994
No 350
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=33.86 E-value=44 Score=31.90 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=46.1
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeecc--------ccCCCCCCccccccC-CC
Q 016625 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVP--------IVMGVELPKSLFQVD-PE 294 (386)
Q Consensus 228 AIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~P--------LVp~v~lP~eLf~i~-~~ 294 (386)
.++|.+....++.. +|.-|-.++|||-++.-|| ++|+||.=+= .+-+.++.....++. -.
T Consensus 15 ~~~~~~~~~~~~~i-------~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v~g~~ 87 (349)
T 3ug7_A 15 ITEKKLEKKDGTKY-------IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYD 87 (349)
T ss_dssp HHHHHHHSSCSCEE-------EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEECTTCS
T ss_pred hHHHhhcccCCCEE-------EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccccccc
Confidence 55666654333221 5666899999999876555 6799995332 222343333332222 13
Q ss_pred cEEEEecChhHHHHHHHHH
Q 016625 295 KVFGLTINPLVLQSIRKAR 313 (386)
Q Consensus 295 KI~GLTIdperL~~IR~eR 313 (386)
.+....+|++...+--.++
T Consensus 88 ~l~~~~id~~~~~~~~~~~ 106 (349)
T 3ug7_A 88 NLYVVEIDPQKAMEEYKEK 106 (349)
T ss_dssp SEEEEECCHHHHHHHHHHH
T ss_pred ceeeeccCHHHHHHHHHHH
Confidence 4778889998765543333
No 351
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=33.82 E-value=79 Score=26.37 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHHhhCC-CCcEEccCccHHHHHHHHHHHH
Q 016625 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQNP-VWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 293 ~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~k~~-~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
++.+|=|+++|+.+.+ .| |- ..+.. +.+.+.+..+ .++....+ .|-+|-++.++||++..|.+.+
T Consensus 122 ~d~vi~l~~~~e~~~~---~R----~~-----d~~e~-~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 188 (204)
T 2v54_A 122 PDLVIFLESGSKEINR---NV----GE-----EIYED-VTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIV 188 (204)
T ss_dssp CSEEEEECCCHHHHTT---CC----SS-----STTCC-SHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHh---hc----Cc-----ccccH-HHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHH
Confidence 4678999999998766 22 11 12322 2444444432 22223321 2344445799999999999988
Q ss_pred hcc
Q 016625 371 HDR 373 (386)
Q Consensus 371 ~~r 373 (386)
...
T Consensus 189 ~~~ 191 (204)
T 2v54_A 189 IEA 191 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=33.79 E-value=64 Score=27.73 Aligned_cols=24 Identities=0% Similarity=0.048 Sum_probs=20.0
Q ss_pred CcEE-ccCccHHHHHHHHHHHHhcc
Q 016625 350 WPVI-VTGKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 350 ~pvI-VT~kSIEEtAa~Il~~~~~r 373 (386)
.-+| ++++++||++..|++.+..+
T Consensus 179 ~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 179 EVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp SEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567 78789999999999999764
No 353
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.79 E-value=16 Score=35.64 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~PL 278 (386)
||..-+ ++|.|.+++|||-+++-||. .|.+|+=+-+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 444444 56679999999999999882 4777764443
No 354
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=33.67 E-value=17 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhc
Q 016625 338 EFAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHD 372 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~ 372 (386)
+.|+++..+. +|+++ ++ ...++|.-..|.+.+.+
T Consensus 131 ~~a~~l~~~~-~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 131 DEARAFAEKN-NLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3477888885 89988 65 45788888777776644
No 355
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=33.65 E-value=10 Score=37.45 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=35.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 288 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eL 288 (386)
.|+|.|||-.-+||+-|-=-|.+..-.|+|||++--.+.|..+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~ 114 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI 114 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE
Confidence 4899999999999999988888777999999988644444433
No 356
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=33.41 E-value=16 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhccc
Q 016625 338 EFAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r~ 374 (386)
+.++++.+++ +|+++ ++ +..|+|.-..|++.+.++.
T Consensus 136 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 136 LEASRFAQEN-ELMFLETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3456667776 89998 64 5578888888887776544
No 357
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=33.33 E-value=14 Score=33.53 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.4
Q ss_pred CCcCc-EEEEccCCCCCChhhHHhh
Q 016625 244 LQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 244 L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
|..-+ ++|+|.++||||=+++-||
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44444 6789999999999998887
No 358
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.26 E-value=14 Score=36.19 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=16.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|.|||++++|||-|.--||
T Consensus 160 i~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHH
Confidence 6699999999999987777
No 359
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=33.15 E-value=18 Score=31.81 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016625 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA-~~G~KVAN 275 (386)
|.|.|.++||||-++--|| ..||..-+
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 7889999999999999999 56866544
No 360
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.10 E-value=15 Score=39.30 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|+|.++||||=+.-.||+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3799999999999999999964
No 361
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=33.09 E-value=17 Score=30.09 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3599999999999999988875433
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=33.04 E-value=1.1e+02 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=18.8
Q ss_pred CCcEEccCccHHHHHHHHHHHHhc
Q 016625 349 VWPVIVTGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 349 ~~pvIVT~kSIEEtAa~Il~~~~~ 372 (386)
.|-+|-+++++||++..|++.+..
T Consensus 184 ~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 184 NFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp TCEEEETTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHH
Confidence 455664458999999999998864
No 363
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=33.02 E-value=12 Score=38.67 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.5
Q ss_pred CcEEEEccCCCCCChhhHHhh-hcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLA-QKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA-~~G~ 271 (386)
.=|+|+|+|+||||=++--|| ..|+
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999 4454
No 364
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.61 E-value=24 Score=37.90 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=29.1
Q ss_pred hhhhhhhhhCCCCCCCCCCCc-CcEEEEccCCCCCChhhHHhhhc
Q 016625 226 IEAIEFTIKQDDGALPQNLQK-ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~-ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.+.+++.+.|.+--.--++.. --|+|+|.|+||||=+.-.||+.
T Consensus 217 ~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp HHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 456677777765211111111 13899999999999999999953
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=32.39 E-value=22 Score=36.54 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.5
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 226 IeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
++.+.+++... .-++|+|.++||||=+.-.||+.
T Consensus 50 l~~l~~~i~~g----------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 50 VEVIKTAANQK----------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred HhhccccccCC----------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 57788888854 15999999999999999999953
No 366
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=32.32 E-value=79 Score=29.98 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=68.0
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCccCCcc--------ceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHH
Q 016625 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNC--------AVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSM 170 (386)
Q Consensus 99 ~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~--------~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~el 170 (386)
.|.++ |.|-++..+++.+..+++-..+|+.. ....... -+.+.+.+.+.+++. -+|+.+ +-+.+
T Consensus 18 kilvl--GaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~d~~~l~~~~~~~----DvVi~~-~p~~~ 89 (365)
T 3abi_A 18 KVLIL--GAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKV-DASNFDKLVEVMKEF----ELVIGA-LPGFL 89 (365)
T ss_dssp EEEEE--CCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEEC-CTTCHHHHHHHHTTC----SEEEEC-CCGGG
T ss_pred EEEEE--CCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccCCcEEE-ecCCHHHHHHHHhCC----CEEEEe-cCCcc
Confidence 47777 55999999998776555311111100 0011111 245666666655432 366655 45567
Q ss_pred HHHHHHHHHHcCCCEeecchH-----HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016625 171 AESAKKACELWGIPSTDVLGP-----ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 227 (386)
Q Consensus 171 r~~l~~~~~~~~i~~vDll~p-----~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIe 227 (386)
-..+.+.|-+.|+.++|+-.. -++...+.-|+.-...-+-.||+.+-+-...+++++
T Consensus 90 ~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~ 151 (365)
T 3abi_A 90 GFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELD 151 (365)
T ss_dssp HHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSC
T ss_pred cchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhcc
Confidence 778889999999999997421 234555555655433233456655554454555443
No 367
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=31.69 E-value=19 Score=29.82 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=21.8
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCce
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
.--|+++|.+++|||=+.-.|.+..+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~ 74 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVR 74 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346999999999999998888865443
No 368
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=31.65 E-value=24 Score=31.49 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 25 ~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEECCTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999887776
No 369
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=31.61 E-value=16 Score=36.22 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeecccc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQKGY-KVANVPIV 279 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~G~-KVAN~PLV 279 (386)
-+.|||.+.+|||-|---|..... .++|+|.+
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~t 54 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA 54 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCce
Confidence 489999999999988777776666 89999965
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=31.53 E-value=18 Score=30.64 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
--|+|+|.+++|||=|.-.|.+..+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45999999999999999888865443
No 371
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.43 E-value=16 Score=37.47 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=30.5
Q ss_pred hhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh-cCce
Q 016625 226 IEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYK 272 (386)
Q Consensus 226 IeAIEFAlkhDD-----G~-~p~~L~~ADIVLvGVSRTsKTPlSiYLA~-~G~K 272 (386)
-|+|+|-++|-+ |. -|+| |+|.|+++||||=+.-.+|+ .|..
T Consensus 222 ~e~V~~pl~~pe~f~~~Gi~pprG-----ILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 222 REVVELPLLSPERFATLGIDPPKG-----ILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp HHHTHHHHHCHHHHHHHTCCCCSE-----EEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhcCHHHHHHCCCCCCCc-----eEeeCCCCCcHHHHHHHHHhccCCC
Confidence 356777776654 43 2333 88999999999999999994 4543
No 372
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=31.26 E-value=19 Score=30.42 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
--|+|+|-+.+|||=|.-.|.+.. ...++|
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~ 37 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT 37 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccC
Confidence 359999999999999988887543 344444
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=31.21 E-value=49 Score=27.89 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-HHHhhCCCCcEEccCccHHHHHHHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG-RIFAQNPVWPVIVTGKAIEETAAVVLRLY 370 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~-~lf~k~~~~pvIVT~kSIEEtAa~Il~~~ 370 (386)
.++.+|-|+.+++.+. +|+.. + ...|.+ +.+.+.+..+. ++.... .+-+|-++.++||++..|++.+
T Consensus 130 ~~d~vi~l~~~~e~~~----~Rl~~-r-----~~r~~~-~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 130 KPDVVFYLNVPPNYAQ----NRSDY-G-----EEIYEK-VETQKKIYETYKHFAHED-YWINIDATRKIEDIHNDIVKEV 197 (212)
T ss_dssp CCSEEEEEECCTTGGG----GSTTT-T-----SSTTCS-HHHHHHHHHHGGGGTTCT-TEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHH----Hhhcc-C-----cccccH-HHHHHHHHHHHHHHhccC-CEEEEECCCCHHHHHHHHHHHH
Confidence 3467999999998764 34421 1 112443 34444443221 122122 3445544589999999999998
Q ss_pred hcc
Q 016625 371 HDR 373 (386)
Q Consensus 371 ~~r 373 (386)
...
T Consensus 198 ~~~ 200 (212)
T 2wwf_A 198 TKI 200 (212)
T ss_dssp TTS
T ss_pred HHh
Confidence 765
No 374
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=31.16 E-value=18 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhcc
Q 016625 339 FAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 339 ~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r 373 (386)
.++++.+++ +++++ |+ +..|+|.-..|++.+.++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 135 VAKEFADAN-KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHT-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455666776 89998 65 557999998888877543
No 375
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=31.01 E-value=21 Score=33.50 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
||..-+ ++|.|.+++|||=+++-+|. .|.+|+=+-
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444444 67789999999999998882 455555443
No 376
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=31.00 E-value=1.2e+02 Score=29.22 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=50.6
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
+++|+--+..|. -|+.+++.+..-.|++ +++.+... +++ ...+++ ..--+|+.+.-+.+.|..+.+
T Consensus 78 rq~~~~~~diG~~Ka~~~~~~l~~lnp~v------~v~~~~~~-~~~--~~~~~~----~~~dvVv~~~d~~~~r~~ln~ 144 (346)
T 1y8q_A 78 AQFLIRTGSVGRNRAEASLERAQNLNPMV------DVKVDTED-IEK--KPESFF----TQFDAVCLTCCSRDVIVKVDQ 144 (346)
T ss_dssp GCTTSCSSCTTSBHHHHHHHHHHHTCTTS------EEEEECSC-GGG--CCHHHH----TTCSEEEEESCCHHHHHHHHH
T ss_pred CCCccccccCcCCHHHHHHHHHHhHCCCe------EEEEEecc-cCc--chHHHh----cCCCEEEEcCCCHHHHHHHHH
Confidence 444444455665 4666666666667764 34443332 221 122333 223599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016625 177 ACELWGIPSTDV 188 (386)
Q Consensus 177 ~~~~~~i~~vDl 188 (386)
+|.++++|+|+.
T Consensus 145 ~~~~~~ip~i~~ 156 (346)
T 1y8q_A 145 ICHKNSIKFFTG 156 (346)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999985
No 377
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=30.74 E-value=17 Score=33.62 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.++||||-+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999994
No 378
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=30.68 E-value=16 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
++..-. +.|+|.++||||=|++-||
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444443 5589999999999999888
No 379
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=30.46 E-value=15 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=|||+|.+++|||=++--||.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999994
No 380
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=29.89 E-value=21 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
--|+|+|-+.+|||=|.-.|.+..+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3599999999999999888875433
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=29.81 E-value=22 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..-|+++|-+.+|||-|.-.|.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 34699999999999999877764
No 382
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=29.80 E-value=13 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.4
Q ss_pred CcEEEEccCCCCCCh
Q 016625 247 ADIILSGVSRTGKTP 261 (386)
Q Consensus 247 ADIVLvGVSRTsKTP 261 (386)
-+++++|.++||||=
T Consensus 77 ~~~~i~g~TGsGKTt 91 (235)
T 3llm_A 77 SVVIIRGATGCGKTT 91 (235)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred CEEEEEeCCCCCcHH
Confidence 479999999999994
No 383
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=29.69 E-value=19 Score=29.41 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCCC-cEE-cc---CccHHHHHHHHHHHHhcccc
Q 016625 338 EFAGRIFAQNPVW-PVI-VT---GKAIEETAAVVLRLYHDRKH 375 (386)
Q Consensus 338 ~~A~~lf~k~~~~-pvI-VT---~kSIEEtAa~Il~~~~~r~~ 375 (386)
+.++++++++ +| +++ ++ +..|+|.-..|.+.+.++..
T Consensus 154 ~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 154 EMVRAVVDPE-GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHCTT-CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 4566777787 88 888 64 55688888888887765543
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=29.63 E-value=20 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.7
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..-|+++|-+.+|||=|.-.|.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 35699999999999998888874
No 385
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=29.59 E-value=2.2e+02 Score=22.86 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
...-|+|+|-+++|||=|.-.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457999999999999888777744
No 386
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=29.57 E-value=22 Score=35.10 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh-----cCceeee
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ-----KGYKVAN 275 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA~-----~G~KVAN 275 (386)
||..-+ ++|.|.+++|||-+++-+|. .|.+|+=
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 566666 56779999999999998873 3655543
No 387
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.41 E-value=16 Score=33.68 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|.|.++||||=+.-.||+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998886
No 388
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=29.16 E-value=36 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=15.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTD 187 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vD 187 (386)
..-+.+........+..+|+++||.++-
T Consensus 168 ~~q~~~~~~~~~~~l~~~~~~~gi~~~a 195 (290)
T 4gie_A 168 VNQVELHPLFQQRTLREFCKQHNIAITA 195 (290)
T ss_dssp EEEEECBTTBCCHHHHHHHHHTTCEEEE
T ss_pred eeeEeccccchhHHHHHHHHHcCceEee
Confidence 3334444333334455677777776653
No 389
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=29.15 E-value=24 Score=29.54 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=23.0
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016625 241 PQNLQKADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 241 p~~L~~ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
+....+--|+|||-+.+|||=|.-.|.+.-+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455667799999999999988866664433
No 390
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=29.02 E-value=21 Score=36.27 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|+|+|.++||||=+.-.+|+
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999995
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.86 E-value=19 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~P 277 (386)
+.|+|++++|||=|.--||. .|+.+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~ 36 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEe
Confidence 67999999999998877773 365554443
No 392
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=28.84 E-value=40 Score=29.03 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC------------HHHHHHHHH-HHHHcCCCEeecchHHH
Q 016625 145 EQLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKK-ACELWGIPSTDVLGPIT 193 (386)
Q Consensus 145 e~l~~il~~a~~~--~-~iV~~Tlvd------------~elr~~l~~-~~~~~~i~~vDll~p~i 193 (386)
+.+.++|+.+.+. + .||+.|+.. .++.+.+++ .|++.|++++|+...+.
T Consensus 115 ~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~~iD~~~~~~ 179 (232)
T 1es9_A 115 GGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFV 179 (232)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCEEEeChHHhc
Confidence 4566677777553 2 377777642 345677777 78889999999986543
No 393
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=28.83 E-value=75 Score=31.98 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=35.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS 316 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~ 316 (386)
++++|..+||||=+.++.+.+=++.. .+++.+|..||-+-.--.+++ +|+..
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~~---------------~~~~~~iL~ltft~~aa~e~~-~rl~~ 76 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSVE---------------NCSPYSIMAVTFTNKAAAEMR-HRIGQ 76 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTS---------------CCCGGGEEEEESSHHHHHHHH-HHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHhC---------------CCChhhEEEEeccHHHHHHHH-HHHHH
Confidence 89999999999999876442111000 124567888888888888877 44543
No 394
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=28.83 E-value=19 Score=30.10 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYK 272 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~K 272 (386)
--|+|+|-+.+|||=|.-.|.+.-+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~ 52 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFC 52 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45999999999999999888754433
No 395
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=28.72 E-value=40 Score=35.83 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=47.6
Q ss_pred HH-HHHHHHHHHHccCCCCccCCccceeEEec--cc----cCC-------HHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Q 016625 108 GW-TAEHAVNAALGQFEHCLVDRNCAVNTHLF--SG----IDD-------VEQLMVIIKQAAKDGAMLVYTLADPSMAES 173 (386)
Q Consensus 108 Ge-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~--p~----V~t-------~e~l~~il~~a~~~~~iV~~Tlvd~elr~~ 173 (386)
|. -|+.+++.+...+|++ +++.+.. |. |.+ .+.+.+++.+ --+||-+.-+.+.|..
T Consensus 378 G~~KAeaaa~~L~~iNP~V------~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~----~DlVvd~tDn~~tR~~ 447 (615)
T 4gsl_A 378 GKPKAELAAASLKRIFPLM------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE----HDIIFLLVDSRESRWL 447 (615)
T ss_dssp TSBHHHHHHHHHHHHCTTC------EEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHH----CSEEEECCSSGGGTHH
T ss_pred ChHHHHHHHHHHHhhCCCc------EEEEeeccccccCccccchhhhcCCHHHHHHHhhc----CCEEEecCCCHHHHHH
Confidence 44 5777777788788864 3333321 11 222 2233333332 2599999999999999
Q ss_pred HHHHHHHcCCCEeec
Q 016625 174 AKKACELWGIPSTDV 188 (386)
Q Consensus 174 l~~~~~~~~i~~vDl 188 (386)
+.+.|.++|+|+|+.
T Consensus 448 ln~~c~~~~~PlI~a 462 (615)
T 4gsl_A 448 PSLLSNIENKTVINA 462 (615)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCeEEEE
Confidence 999999999999984
No 396
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=28.54 E-value=20 Score=29.07 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
...|+++|-+++|||=+.-.|.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999998777743
No 397
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.54 E-value=1.3e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDV 188 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDl 188 (386)
+|+..=..++....+...|++++||++.+
T Consensus 35 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 35 IIVAKNAPKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 44555578999999999999999998765
No 398
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=28.49 E-value=15 Score=33.13 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.=-|+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4699999999997765555
No 399
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=28.45 E-value=20 Score=30.12 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
.+.-|+|||-+.+|||=|.-||.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 355699999999999999777765
No 400
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.43 E-value=19 Score=34.53 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|+||||=|..-|+
T Consensus 129 vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 6799999999999988888
No 401
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=28.32 E-value=1e+02 Score=26.48 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=56.2
Q ss_pred HHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCE-eecchH--HHHHHHHHh--CCCCCCCCCCCCCC---CC-CCc
Q 016625 151 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPS-TDVLGP--ITEAIASHL--GVSPSGLPRGAPGR---NF-PLS 219 (386)
Q Consensus 151 l~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~-vDll~p--~i~~le~~l--G~~p~~~~~~~pG~---~~-~ld 219 (386)
++.+.+.| .++++.....+.-+.+.+.|+++|+.+ ++++.| ..+.+.... |..--. -.+|. .. ...
T Consensus 70 ~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~---v~~g~~g~~~~~~~ 146 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLA---VHTGTDQQAAGRKP 146 (211)
T ss_dssp HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEE---EECCHHHHHTTCCS
T ss_pred HHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEE---EcCCCcccccCCCC
Confidence 45554444 588888877454455566788888865 465554 233333332 322110 01221 01 113
Q ss_pred HHHHhhhhhh--hhhhhCCCCCCCCCCC-----cCcEEEEc
Q 016625 220 EEYFRRIEAI--EFTIKQDDGALPQNLQ-----KADIILSG 253 (386)
Q Consensus 220 ~~YF~RIeAI--EFAlkhDDG~~p~~L~-----~ADIVLvG 253 (386)
-++.+++... +.-+.-+-|.++.++. -||.|+||
T Consensus 147 ~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 147 IDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4677777664 5556677888877763 48999988
No 402
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=28.30 E-value=25 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.5
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceeeec
Q 016625 249 IILSGV-SRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 249 IVLvGV-SRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
|.+.|- +.+|||=+|.-|+ ++|+||+=+
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 667777 8999999887665 789998754
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.19 E-value=19 Score=37.34 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=47.2
Q ss_pred EcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhh-hCCCCCCCC
Q 016625 164 TLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTI-KQDDGALPQ 242 (386)
Q Consensus 164 Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAl-khDDG~~p~ 242 (386)
.-+|.++.+.|+..--+.+| .+++..-+++.|.+.+...-. .++ ..+..--. +.|.--+ ..+++.+..
T Consensus 221 ~~ide~~l~el~~~Ll~aDv-~~~~~~~l~~~l~~~~~~~~~-----~~~--~~~~~~l~---~~l~~~l~~~~~~Isl~ 289 (503)
T 2yhs_A 221 KKIDDDLFEELEEQLLIADV-GVETTRKIITNLTEGASRKQL-----RDA--EALYGLLK---EEMGEILAKVDEPLNVE 289 (503)
T ss_dssp CBCSHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHTC-----CBG--GGHHHHHH---HHHHHHHHTTBCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhccC-----CCH--HHHHHHHH---HHHHHHhCCCCCCceee
Confidence 34677777777776666655 445566666666543321110 111 00110000 1111111 124445443
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016625 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSiYLA 267 (386)
+..-. |.|||+|++|||=|.--||
T Consensus 290 -i~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 290 -GKAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp -SCTTEEEEEECCTTSSHHHHHHHHH
T ss_pred -ccCCeEEEEECCCcccHHHHHHHHH
Confidence 33333 6699999999999887777
No 404
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=28.18 E-value=85 Score=25.90 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=++| ++...+...|+++|||++-+. --..|....|..
T Consensus 40 ViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~--sk~eLG~a~g~k 82 (121)
T 2lbw_A 40 VVIAGDIWPADVISHIPVLCEDHSVPYIFIP--SKQDLGAAGATK 82 (121)
T ss_dssp EEECTTCSCTTHHHHHHHHHHHTCCCEEECC--CHHHHHHHHTCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC--CHHHHHHHhCCC
Confidence 445556777 589999999999999999875 457888888954
No 405
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.14 E-value=21 Score=36.54 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-|+|.|+++||||=++-+||+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGG
T ss_pred eeEeecCchHHHHHHHHHHHHH
Confidence 6999999999999999999964
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=28.03 E-value=24 Score=29.34 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-|+|+|-+.+|||=|.-.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999988888744
No 407
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=27.99 E-value=51 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=36.4
Q ss_pred CCCCCCcCcEEEEc--cCCCCCChhhHHhh-hcCceeeeccccCCCC
Q 016625 240 LPQNLQKADIILSG--VSRTGKTPLSIYLA-QKGYKVANVPIVMGVE 283 (386)
Q Consensus 240 ~p~~L~~ADIVLvG--VSRTsKTPlSiYLA-~~G~KVAN~PLVp~v~ 283 (386)
....++..++-+|| |=|+....+|+-.| ..|+++|=+||=.-+.
T Consensus 113 ~L~~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i~ 159 (197)
T 4fmw_A 113 ILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVK 159 (197)
T ss_dssp BCCSCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC-
T ss_pred hhhccCCCCEEEEEEEEeCCCCcchhHHHHHHcCCCEEeccccceee
Confidence 34568888999999 77888899999999 7899999999965443
No 408
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.90 E-value=44 Score=28.44 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++ ++...+...|+++|||++-+. --..|....|.+-
T Consensus 52 ViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~--sk~eLG~a~G~~~ 95 (134)
T 2ale_A 52 IIMAADCEPIEILLHLPLLCEDKNVPYVFVP--SRVALGRACGVSR 95 (134)
T ss_dssp EEEETTCSSGGGGTHHHHHHHHHTCCEEEES--CHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCCC
Confidence 455666788 699999999999999998873 4568888888863
No 409
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=27.69 E-value=1.4e+02 Score=29.59 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=9.5
Q ss_pred ecChhHHHHHHHH
Q 016625 300 TINPLVLQSIRKA 312 (386)
Q Consensus 300 TIdperL~~IR~e 312 (386)
.+|+++|.+|++.
T Consensus 221 ~L~~~~L~~I~~~ 233 (349)
T 3elf_A 221 KLRPDILAQGQQV 233 (349)
T ss_dssp CCCTHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 3578888888764
No 410
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=27.60 E-value=20 Score=34.00 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|.|+|.|++|||=|+--|+
T Consensus 93 vgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 5589999999999998777
No 411
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=27.55 E-value=1.3e+02 Score=26.25 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=61.7
Q ss_pred cEEEEEeCCh-H--HHHHHHHHHHHccCCCCccCCccceeEEeccc----cCCHHHHH----HH---HHHHHhCC--CEE
Q 016625 98 KSIYMVSDGT-G--WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSG----IDDVEQLM----VI---IKQAAKDG--AML 161 (386)
Q Consensus 98 ~~IfiVSDsT-G--eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~----V~t~e~l~----~i---l~~a~~~~--~iV 161 (386)
..|=+|-=+| . ...+--.+++..+.|+. .+...++|+ +.+..+.. .+ ++.+.+.| +||
T Consensus 7 ~~ig~i~p~~~~~~~e~~~~~~~~~~~~p~~------~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~iv 80 (228)
T 2eq5_A 7 YTIGLIRVITLEDKEILNLHGRIIESAFPEL------KVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDAII 80 (228)
T ss_dssp EEEEEEESSCCCCHHHHTHHHHHHHHHCTTE------EEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred eEEEEEeccCccCHHHHHHHHHHHHhhCCCC------eEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCCEEE
Confidence 3455553333 2 33344466677778874 344567775 22322211 22 33334444 566
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhh-hhhhhhh
Q 016625 162 VYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRI-EAIEFTI 233 (386)
Q Consensus 162 ~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RI-eAIEFAl 233 (386)
+..... - .+.+..+..++|++.+..|.+..... +| .--+ .-+-...+...|.+.+ ++..+.+
T Consensus 81 iaCnta-~---~~~~l~~~~~iPvi~i~~~~~~~a~~-~~-~rig----Vlat~~t~~~~~~~~~~~~~g~~~ 143 (228)
T 2eq5_A 81 ISCAAD-P---AVEKVRKLLSIPVIGAGSSVSALALA-YG-RRVG----VLNLTEETPKVIRSILGNNLIAED 143 (228)
T ss_dssp ECSTTC-T---THHHHHHHCSSCEEEHHHHHHHHHHT-TC-SSEE----EECSSSCCCHHHHHHHGGGEEEEE
T ss_pred EeCCch-H---HHHHHHHhCCCCEeCccHHHHHHHHH-hC-CeEE----EEecCcccHHHHHHHHHHHhCccc
Confidence 655444 2 23333345589999999999887653 44 1111 1111234446788878 7655444
No 412
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=27.54 E-value=25 Score=35.56 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCce
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYK 272 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~K 272 (386)
-|+|.|+++||||=++--|| ..|+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 49999999999999999999 44543
No 413
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=27.49 E-value=20 Score=33.14 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHH--HHHHHHHhCCCCCC----CCCCCCCCCCCCc---HHHHhhhhhh
Q 016625 159 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPI--TEAIASHLGVSPSG----LPRGAPGRNFPLS---EEYFRRIEAI 229 (386)
Q Consensus 159 ~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~--i~~le~~lG~~p~~----~~~~~pG~~~~ld---~~YF~RIeAI 229 (386)
+++++-+...++.+ +.+.|+++|+..+.++.|. .+.++........- ...+..|....+. .++.+++...
T Consensus 125 gii~~d~~~e~~~~-~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~ 203 (268)
T 1qop_A 125 SVLVADVPVEESAP-FRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEY 203 (268)
T ss_dssp EEEETTCCGGGCHH-HHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHT
T ss_pred EEEEcCCCHHHHHH-HHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhc
Confidence 57777666656554 4467888999888888774 23344332222100 0001233322232 4677777653
Q ss_pred -hhhhhCCCCCC-CCCCCc-----CcEEEEc
Q 016625 230 -EFTIKQDDGAL-PQNLQK-----ADIILSG 253 (386)
Q Consensus 230 -EFAlkhDDG~~-p~~L~~-----ADIVLvG 253 (386)
+.-|..+=|.+ ++++.+ ||.|+||
T Consensus 204 ~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 204 HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 44466688887 665544 9999999
No 414
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=27.34 E-value=19 Score=32.56 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|++-|++++|||=++-.|+++
T Consensus 8 i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999953
No 415
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=27.28 E-value=19 Score=36.77 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016625 249 IILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~ 269 (386)
|||+|.+++|||=++--||.+
T Consensus 38 IvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999843
No 416
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.27 E-value=2.4e+02 Score=23.99 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=15.4
Q ss_pred cCccHHHHHHHHHHHHhc
Q 016625 355 TGKAIEETAAVVLRLYHD 372 (386)
Q Consensus 355 T~kSIEEtAa~Il~~~~~ 372 (386)
.++++||++..|++.+..
T Consensus 202 ~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 202 ASQPPATVWADILNKLGK 219 (220)
T ss_dssp TTSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 468999999999998853
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=27.08 E-value=24 Score=28.65 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016625 244 LQKADIILSGVSRTGKTPLSIYLAQKGY 271 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSiYLA~~G~ 271 (386)
..+--|+|||-+++|||=+.-.|.+..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4455699999999999998888875434
No 418
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=27.05 E-value=24 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=24.7
Q ss_pred HHHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhcc
Q 016625 338 EFAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDR 373 (386)
Q Consensus 338 ~~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r 373 (386)
+.++++.+++ +|+++ ++ +..|+|.-..|++.+.++
T Consensus 151 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 151 EEARMFAENN-GLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3456677776 89988 64 557888888887766543
No 419
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=26.89 E-value=37 Score=29.33 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC------------HHHHHHHHHHHH-HcCCCEeecchHH
Q 016625 145 EQLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKKACE-LWGIPSTDVLGPI 192 (386)
Q Consensus 145 e~l~~il~~a~~~--~-~iV~~Tlvd------------~elr~~l~~~~~-~~~i~~vDll~p~ 192 (386)
+.+..+|+.+++. + .||+.|+.- .++.+.+++.|+ ..+++++|+...+
T Consensus 116 ~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~v~~iD~~~~~ 179 (229)
T 1fxw_F 116 GGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGF 179 (229)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHhcCCCeEEEeCHHHh
Confidence 3466667776543 2 377766532 256777888887 7899999997754
No 420
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.76 E-value=28 Score=34.77 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=28.9
Q ss_pred HhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 223 FRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 223 F~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
......+.-+++.... --++|.|.++||||=+.-.+|+.
T Consensus 35 ~~~~~~L~~~i~~~~~--------~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 35 LAAGKPLPRAIEAGHL--------HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HSTTSHHHHHHHHTCC--------CEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhchHHHHHHHHcCCC--------cEEEEECCCCCcHHHHHHHHHHH
Confidence 3334666666765432 34899999999999999999943
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=26.74 E-value=27 Score=31.66 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.3
Q ss_pred cCCCCCChhhHHhh----hcCceeee
Q 016625 254 VSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 254 VSRTsKTPlSiYLA----~~G~KVAN 275 (386)
-.++|||=++..|| ++|+||.=
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 67999999888776 68999963
No 422
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=26.62 E-value=82 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=17.5
Q ss_pred EEcCCHHHHH-HHHHHHHHcCCCEeecchHHH
Q 016625 163 YTLADPSMAE-SAKKACELWGIPSTDVLGPIT 193 (386)
Q Consensus 163 ~Tlvd~elr~-~l~~~~~~~~i~~vDll~p~i 193 (386)
|++.+...-+ .+..+|+++||.++- ++|+-
T Consensus 196 ~~l~~~~~~~~~l~~~~~~~gi~v~a-~spL~ 226 (346)
T 3n6q_A 196 YNLLNRWVDKSGLLDTLQNNGVGCIA-FTPLA 226 (346)
T ss_dssp CBTTBCHHHHTTHHHHHHHHTCEEEE-BSTTG
T ss_pred CchhhcCcchhhHHHHHHHcCCeEEE-ecccc
Confidence 4555554443 466677777776664 45544
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=26.61 E-value=17 Score=30.65 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.7
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016625 248 DIILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA 267 (386)
-|+|+|.+++|||=|.--|+
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 49999999999997766555
No 424
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=26.53 E-value=28 Score=30.87 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.6
Q ss_pred EEccCCCCCChhhHHhh----hcCceeee
Q 016625 251 LSGVSRTGKTPLSIYLA----QKGYKVAN 275 (386)
Q Consensus 251 LvGVSRTsKTPlSiYLA----~~G~KVAN 275 (386)
+.|--++|||=+++-|| ++|+||.=
T Consensus 6 vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 35777999999887665 68999963
No 425
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=26.43 E-value=88 Score=28.30 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=46.1
Q ss_pred eeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCc
Q 016625 272 KVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWP 351 (386)
Q Consensus 272 KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~p 351 (386)
+.++||+=...|.++.=|.+|++|-.=|.||.+.= + +... ...+...+.+-.-+..--+.+++. |+|
T Consensus 5 ~~~~yp~P~~~p~~~~~w~ldp~rtALlVIDmQ~~--F----~~~~------~~~~~~~~~vv~~i~~Li~~ar~~-g~p 71 (223)
T 3tg2_A 5 KIASYPLPVSLPTNKVDWRIDASRAVLLIHNMQEY--F----VHYF------DSQAEPIPSLIKHIQQLKAHAKQA-GIP 71 (223)
T ss_dssp CBCCCCCCCSCCCCSSCCCCCTTTEEEEEECCBHH--H----HTTB------CTTSTTHHHHHHHHHHHHHHHHHH-TCC
T ss_pred CCCCCCCCcccCCCCCCCcCCCCCeEEEEEcCchh--h----hCcc------ccccccHHHHHHHHHHHHHHHHHc-CCe
Confidence 45667764455554555678999999999998741 1 1111 123344556666666666667887 999
Q ss_pred EE-ccCc
Q 016625 352 VI-VTGK 357 (386)
Q Consensus 352 vI-VT~k 357 (386)
|| |.+-
T Consensus 72 Vi~t~~~ 78 (223)
T 3tg2_A 72 VVYTAQP 78 (223)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 99 7653
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=26.41 E-value=25 Score=29.46 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G 270 (386)
.--|+|+|-+.+|||=|.-.|.+.-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4569999999999999998887543
No 427
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=26.40 E-value=32 Score=31.16 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccccCC
Q 016625 221 EYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMG 281 (386)
Q Consensus 221 ~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA----~~G~KVAN~PLVp~ 281 (386)
.|-+|+.-..-.+.-.++..+. .+.-|++.+-.+.|||-.++=|| .+|+||.=+-++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 5 RYQQRQQKVKDRVDARVAQAQE--ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp ------------------------CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhhcccchhhhhhhccc--cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3444444444444445555554 46789999999999999988887 67999999977764
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=26.37 E-value=21 Score=32.07 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCc
Q 016625 249 IILSGVSRTGKTPLSIYLA----QKGY 271 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA----~~G~ 271 (386)
|++-|++++|||=++-.|+ ..|+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999888877 3576
No 429
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=26.18 E-value=22 Score=35.17 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=|.-.+|+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999853
No 430
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=26.12 E-value=24 Score=32.52 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeeecccc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV 279 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLV 279 (386)
--+++||.+.+|||-+---|.. +-.++.++|=+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~ 133 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGI 133 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCC
Confidence 4699999999999988777773 33467776643
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=26.09 E-value=22 Score=33.20 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
|.|+|.|+||||=|+-.|+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998884
No 432
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=26.05 E-value=1.3e+02 Score=23.77 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=..++....+...|++++||++-+. +--..|...+|...
T Consensus 36 ViiA~D~~~~~~~~l~~~c~~~~vp~~~~~-~s~~eLG~a~G~~~ 79 (101)
T 1w41_A 36 IIVARNARPDIKEDIEYYARLSGIPVYEFE-GTSVELGTLLGRPH 79 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCCEEEES-SCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCEEEec-CCHHHHHHHhCCCC
Confidence 334444779999999999999999988742 34577888888763
No 433
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=25.94 E-value=22 Score=31.75 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEECTTSCHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4699999999998876666
No 434
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=25.75 E-value=3.3e+02 Score=23.70 Aligned_cols=128 Identities=14% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCE-eecc
Q 016625 113 HAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPS-TDVL 189 (386)
Q Consensus 113 ~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~-vDll 189 (386)
.+++++-.+||+.. +-++.|+.- ..+...+. +.+-| .+.||.....++-+.+.+.++++|.+. +|++
T Consensus 45 ~~i~~l~~~~p~~~----v~lD~kl~d---ip~t~~~~---~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll 114 (216)
T 1q6o_A 45 RAVRDLKALYPHKI----VLADAKIAD---AGKILSRM---CFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELT 114 (216)
T ss_dssp HHHHHHHHHCTTSE----EEEEEEECS---CHHHHHHH---HHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHhCCCCe----EEEEEEecc---cHHHHHHH---HHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeee
Confidence 35666666776532 234666652 35554443 33333 577888888874444556777788875 6677
Q ss_pred ----hHHHHHHHHHhCCCCCCC----CCCCCCCCCCCcHHHHhhhhhh---hhhhhCCCCCCCCCCC-----cCcEEEEc
Q 016625 190 ----GPITEAIASHLGVSPSGL----PRGAPGRNFPLSEEYFRRIEAI---EFTIKQDDGALPQNLQ-----KADIILSG 253 (386)
Q Consensus 190 ----~p~i~~le~~lG~~p~~~----~~~~pG~~~~ld~~YF~RIeAI---EFAlkhDDG~~p~~L~-----~ADIVLvG 253 (386)
..-...++. +|..-.-. -...||... ..+.++++..+ +|-+.-|-|.++++.. -||+|.+|
T Consensus 115 ~~~t~~~~~~l~~-~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG 191 (216)
T 1q6o_A 115 GYWTWEQAQQWRD-AGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAG 191 (216)
T ss_dssp SCCCHHHHHHHHH-TTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEES
T ss_pred eCCChhhHHHHHh-cCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEe
Confidence 344555543 34321000 001244322 23455555433 3545667788777652 46888887
No 435
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=25.58 E-value=22 Score=35.80 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.2
Q ss_pred EEEccCCC-CCChhhHHhh----hcCceeeec
Q 016625 250 ILSGVSRT-GKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 250 VLvGVSRT-sKTPlSiYLA----~~G~KVAN~ 276 (386)
-+|||.+| |||=|+-||+ ..||||.+|
T Consensus 65 ~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 65 PSIHIAGTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 47889998 7999999999 469999876
No 436
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=25.42 E-value=53 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016625 144 VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTD 187 (386)
Q Consensus 144 ~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~~i~~vD 187 (386)
.+++.+++..+.-....+-+.+-.-.....+..+|+++||.++-
T Consensus 165 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a 208 (324)
T 4gac_A 165 SRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHARGLEVTA 208 (324)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCcceeeeccCchhhHHHHHHHHHHhceeeee
Confidence 45555554443222233334433322334466778888876654
No 437
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=25.38 E-value=1.2e+02 Score=24.22 Aligned_cols=44 Identities=5% Similarity=-0.121 Sum_probs=35.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=++++.+..+...|.+++||++... +--..|...+|.+.
T Consensus 42 VilA~D~~~~~~~~i~~~c~~~~ip~~~~~-~s~~eLG~A~Gk~~ 85 (105)
T 3u5e_c 42 IIIAANTPVLRKSELEYYAMLSKTKVYYFQ-GGNNELGTAVGKLF 85 (105)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTCEEEECS-SCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC-CCHHHHHHHhCCcc
Confidence 555666789999999999999999999632 34667888888764
No 438
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=25.18 E-value=1e+02 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=34.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+.++....+...|++++||++-+ .+--..|...+|...
T Consensus 41 ViiA~D~~~~~~~~l~~~c~~~~Vp~~~~-~~sk~eLG~a~G~~~ 84 (110)
T 3cpq_A 41 VVLAGNIPKDLEEDVKYYAKLSNIPVYQH-KITSLELGAVCGKPF 84 (110)
T ss_dssp EEECTTCBHHHHHHHHHHHHHTTCCEEEC-CSCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEE-cCCHHHHHHHhCCcc
Confidence 44444568999999999999999998875 234577888888764
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=25.10 E-value=28 Score=28.76 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999998888754
No 440
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=25.05 E-value=22 Score=32.97 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016625 169 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (386)
Q Consensus 169 elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~AD 248 (386)
.+.+.+.+.|.+..-. +=..+++..|. +=|+ +-.+| +++++--++ | -|+ +--
T Consensus 9 ~~~~~i~~~~~~~~~~--~~w~~I~~~l~-yq~~----------------~~~~f--~~~l~~~~~---~-iPk---kn~ 60 (212)
T 1tue_A 9 NMSQWIRFRCSKIDEG--GDWRPIVQFLR-YQQI----------------EFITF--LGALKSFLK---G-TPK---KNC 60 (212)
T ss_dssp CHHHHHHHHHHTSCSC--CCSHHHHHHHH-HTTC----------------CHHHH--HHHHHHHHH---T-CTT---CSE
T ss_pred CHHHHHHHHHHHccCC--CCHHHHHHHHH-HcCc----------------CHHHH--HHHHHHHHh---c-CCc---ccE
Confidence 4667788888754221 23444444444 2232 33345 555554444 2 333 223
Q ss_pred EEEEccCCCCCChhhHHhhhc-Ccee
Q 016625 249 IILSGVSRTGKTPLSIYLAQK-GYKV 273 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~-G~KV 273 (386)
+++.|+.+||||=+++=||+. +.|+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 999999999999999999943 4455
No 441
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=24.88 E-value=1.3e+02 Score=24.04 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=35.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++..+..+...|.+++||++.+ -+--..|...+|.+.
T Consensus 42 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~-~~s~~eLG~a~Gk~~ 85 (104)
T 4a18_G 42 VFISNNCPTVRKSEIEYYASLAQISIHHF-VGSNVELGTACGKYH 85 (104)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTCEEEEC-SSCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCcEEEe-cCCHHHHHHHhCCcc
Confidence 56667778999999999999999999962 235667888888764
No 442
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=24.82 E-value=37 Score=28.60 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=21.0
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 244 LQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-..--|+|+|-+.+|||=|.-.|.+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34466999999999999988777743
No 443
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=24.72 E-value=1.3e+02 Score=31.00 Aligned_cols=81 Identities=14% Similarity=-0.050 Sum_probs=49.4
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016625 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (386)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (386)
+++|+-.+..|. -|+.+++.+....|++ ++..+. ...+.+.+-..+.-..--+|+.+..+.+.|..+.+
T Consensus 74 RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v------~v~~~~----~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~ 143 (531)
T 1tt5_A 74 NNFFLQRSSIGKNRAEAAMEFLQELNSDV------SGSFVE----ESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143 (531)
T ss_dssp HCTTCCGGGBTSBHHHHHHHHHHTTCTTS------BCCEES----SCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHH
T ss_pred cCccCChhhcCcHHHHHHHHHHHHhCCCC------eEEEeC----CCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHH
Confidence 334443344564 4666777777777764 233221 12222111011111222599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016625 177 ACELWGIPSTDV 188 (386)
Q Consensus 177 ~~~~~~i~~vDl 188 (386)
+|..+++|+|+.
T Consensus 144 ~c~~~~iplI~~ 155 (531)
T 1tt5_A 144 VLWNSQIPLLIC 155 (531)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999986
No 444
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=24.49 E-value=1.4e+02 Score=25.09 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=32.8
Q ss_pred EEEEEcCCHH-HHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADPS-MAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~e-lr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=+++. +...+...|++++||++-+. --..|...+|.+
T Consensus 61 ViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~--sk~eLG~a~G~~ 103 (135)
T 2aif_A 61 VLLAADAEPLEILLHLPLVCEDKNTPYVFVR--SKVALGRACGVS 103 (135)
T ss_dssp EEEETTCSCHHHHHHHHHHHHHTTCCEEEES--CHHHHHHHTTCS
T ss_pred EEEecCCChHHHHhHHHHHHHhcCCcEEEEC--CHHHHHHHhCCC
Confidence 4445556665 66899999999999999774 458899999987
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=24.48 E-value=24 Score=34.67 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=21.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVA 274 (386)
=|+|+|.++||||=+.--|| ..+.++-
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 37899999999999999999 3444443
No 446
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.44 E-value=30 Score=28.48 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHhhCCCCcEE-cc---CccHHHHHHHHHHHHhccc
Q 016625 339 FAGRIFAQNPVWPVI-VT---GKAIEETAAVVLRLYHDRK 374 (386)
Q Consensus 339 ~A~~lf~k~~~~pvI-VT---~kSIEEtAa~Il~~~~~r~ 374 (386)
.++++.+++ +|+++ ++ +..|+|.-..|++.+..+.
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 135 EAQAVAQEW-KCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 445566666 78888 64 5679999999998876654
No 447
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=24.35 E-value=2.5e+02 Score=21.85 Aligned_cols=59 Identities=7% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHHHHHcCCCE--eecc--hHHHHHHHHHhCCCC
Q 016625 146 QLMVIIKQAAKDGAMLVYTLA-----DPSMAESAKKACELWGIPS--TDVL--GPITEAIASHLGVSP 204 (386)
Q Consensus 146 ~l~~il~~a~~~~~iV~~Tlv-----d~elr~~l~~~~~~~~i~~--vDll--~p~i~~le~~lG~~p 204 (386)
++.+.++++-+++.+|+||-. .=-....+++...++||++ +|+. ......|.+..|...
T Consensus 6 ~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCC
Confidence 345566666677789999886 3334555566666677775 4553 355677777777643
No 448
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=24.31 E-value=29 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+++|-+++|||=+.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999988887744
No 449
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=24.30 E-value=30 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999888854
No 450
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=24.19 E-value=20 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.9
Q ss_pred EEEEccCCCCCChh
Q 016625 249 IILSGVSRTGKTPL 262 (386)
Q Consensus 249 IVLvGVSRTsKTPl 262 (386)
.+|+|.++||||=+
T Consensus 29 ~~i~G~NGsGKStl 42 (182)
T 3kta_A 29 TAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999986
No 451
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=24.10 E-value=28 Score=27.54 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
--|+++|-+.+|||=+.-.|.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4599999999999999888774
No 452
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=24.07 E-value=26 Score=31.73 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~G~KVAN~P 277 (386)
--|+|||-+++|||=|.--|...+....++|
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~ 39 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYP 39 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCC
Confidence 4599999999999987766666667777765
No 453
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=23.93 E-value=28 Score=29.02 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016625 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
...-|+|||-+++|||=|.-.|.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456999999999999998777743
No 454
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=23.89 E-value=24 Score=31.82 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.8
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=++|.|.+|+|||=|...+++
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988884
No 455
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=23.69 E-value=34 Score=29.91 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=18.5
Q ss_pred ccCCCCCChhhHHhh----hcCceeeec
Q 016625 253 GVSRTGKTPLSIYLA----QKGYKVANV 276 (386)
Q Consensus 253 GVSRTsKTPlSiYLA----~~G~KVAN~ 276 (386)
+-.++|||-+++-|| ++|+||.=|
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 10 GKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 457899999887655 789998643
No 456
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.59 E-value=86 Score=25.64 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhC-C-CEEEEE-cCCHHHH
Q 016625 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKD-G-AMLVYT-LADPSMA 171 (386)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~-~-~iV~~T-lvd~elr 171 (386)
|....|++|+|.-=.|.=.++ =++ .| -+.+.+++.+.++++.++ + +||+-| -.-..++
T Consensus 1 m~~mkiaVIgD~dtv~GFrLa-----Gi~-------------~~-~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~ 61 (109)
T 2d00_A 1 MVPVRMAVIADPETAQGFRLA-----GLE-------------GY-GASSAEEAQSLLETLVERGGYALVAVDEALLPDPE 61 (109)
T ss_dssp CCCCCEEEEECHHHHHHHHHT-----TSE-------------EE-ECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHH
T ss_pred CCccEEEEEeCHHHHHHHHHc-----CCe-------------EE-EeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhH
Confidence 345679999994333322222 221 23 358999999999987544 3 666655 3334777
Q ss_pred HHHHHHHHHcCCCEe
Q 016625 172 ESAKKACELWGIPST 186 (386)
Q Consensus 172 ~~l~~~~~~~~i~~v 186 (386)
+.+.+.-.....|.|
T Consensus 62 ~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 62 RAVERLMRGRDLPVL 76 (109)
T ss_dssp HHHHHHTTCCCCCEE
T ss_pred HHHHHHHhCCCCeEE
Confidence 777766444445654
No 457
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.42 E-value=1.8e+02 Score=25.36 Aligned_cols=103 Identities=10% Similarity=-0.007 Sum_probs=58.3
Q ss_pred eeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCC
Q 016625 133 VNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRG 210 (386)
Q Consensus 133 ~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~ 210 (386)
+++..+..-.+.++..+.++.+...+ +||+.......+.+.+++ +.+.|||+|-+-. ....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~-~~~~~iPvV~~~~------------~~~~---- 101 (293)
T 3l6u_A 39 YEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE-AKKAGIPVFAIDR------------MIRS---- 101 (293)
T ss_dssp CEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH-HHHTTCCEEEESS------------CCCC----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH-HHHcCCCEEEecC------------CCCC----
Confidence 34444555567777777777764443 788887766665566654 5567999997632 2110
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhC-CCCCCCCCCCcCcEEEEccC
Q 016625 211 APGRNFPLSEEYFRRIEAIEFTIKQ-DDGALPQNLQKADIILSGVS 255 (386)
Q Consensus 211 ~pG~~~~ld~~YF~RIeAIEFAlkh-DDG~~p~~L~~ADIVLvGVS 255 (386)
.++......++|-.=-.|.+|.++. +.++ +-....|.+|+-.
T Consensus 102 ~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~---~~~~~~i~~i~g~ 144 (293)
T 3l6u_A 102 DAVVSSITSNNQMIGEQLASYIKNELIKQT---GRSTGRIVEITGT 144 (293)
T ss_dssp TTCSEEEEECHHHHHHHHHHHHHHHHHHHH---SCSCEEEEEEECS
T ss_pred CcceeEEecCHHHHHHHHHHHHHHHhccCC---CCCCceEEEEECC
Confidence 1122233335566666788888873 0111 1123478888643
No 458
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.41 E-value=80 Score=26.31 Aligned_cols=60 Identities=8% Similarity=-0.154 Sum_probs=35.5
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCc---cHHHHHHHHH
Q 016625 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGK---AIEETAAVVL 367 (386)
Q Consensus 296 I~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~k---SIEEtAa~Il 367 (386)
++.|..+++.|.+ |++..+++. .-+.+.++. .+.-+.++ +. +..+| +|+. ++||++..|+
T Consensus 105 ~i~L~~~~e~l~~----R~~~r~~d~-----~ld~~~~~~-~~~~~~~~-~~-~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 105 FIILWTNREELLR----RDALRKKDE-----QMGERCLEL-VEEFESKG-ID-ERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp EEEEECCHHHHHH----HTTTSCC---------CGGGGHH-HHHHHHTT-CC-TTSEEECSSSCGGGHHHHHHHHH
T ss_pred EEEEeCCHHHHHH----HHHhccccc-----cCCHHHHHH-HHHHhhcC-CC-ccEEEeCCCCChhhHHHHHHHHh
Confidence 5778888886653 554444421 123333333 33333343 33 56788 9999 9999999998
No 459
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.40 E-value=2.9e+02 Score=23.85 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=54.9
Q ss_pred eeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCC
Q 016625 133 VNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRG 210 (386)
Q Consensus 133 ~~~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~ 210 (386)
++...+..=.+.++..++++.+...+ +||+..... .+.+ +.+.+.|+|+|-+-. ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~-~~l~~~~iPvV~i~~------------~~~----- 96 (276)
T 3jy6_A 38 YIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTV-QEILHQQMPVVSVDR------------EMD----- 96 (276)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHH-HHHHTTSSCEEEESC------------CCT-----
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHH-HHHHHCCCCEEEEec------------ccC-----
Confidence 44455555567777777777764444 688877665 3333 345678999986522 111
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCC
Q 016625 211 APGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSR 256 (386)
Q Consensus 211 ~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSR 256 (386)
.++......++|-.=-.|.+|-+++ |. -.|.+++-+.
T Consensus 97 ~~~~~~V~~D~~~~g~~a~~~L~~~--G~-------~~I~~i~~~~ 133 (276)
T 3jy6_A 97 ACPWPQVVTDNFEAAKAATTAFRQQ--GY-------QHVVVLTSEL 133 (276)
T ss_dssp TCSSCEEECCHHHHHHHHHHHHHTT--TC-------CEEEEEEECS
T ss_pred CCCCCEEEEChHHHHHHHHHHHHHc--CC-------CeEEEEecCC
Confidence 1222233335566666788888885 22 2577877643
No 460
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=23.39 E-value=82 Score=25.82 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=33.7
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=+++ ++...+...|++++||++-+.+ -..|...+|..
T Consensus 49 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s--k~eLG~a~G~~ 91 (120)
T 1vq8_F 49 VFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ--QDDLGHAAGLE 91 (120)
T ss_dssp EEEESCCSSGGGTTTHHHHHHTTCCCEEEESC--HHHHHHHTTCS
T ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCEEEECC--HHHHHHHhCCC
Confidence 444555666 5789999999999999987654 67899999987
No 461
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.32 E-value=26 Score=36.82 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016625 248 DIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~~ 269 (386)
-++|.|.++||||=++-.||+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999964
No 462
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.32 E-value=26 Score=35.69 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.7
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=++|+|.++||||=+.-.||.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988883
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=23.27 E-value=2.4e+02 Score=24.52 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=26.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHHh----hCCCCc--EEccCccHHHHHH
Q 016625 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFA----QNPVWP--VIVTGKAIEETAA 364 (386)
Q Consensus 292 ~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A-~~lf~----k~~~~p--vIVT~kSIEEtAa 364 (386)
.++.+|=|+++|+.+.+--.+| |.+. ..+-+. ...+.+... .+++. +. .++ +|=.+.++||+..
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R----~r~~---e~~~~~-~~~~rv~~~~~~~~~~~~~~~-~~~~~vId~~~~~eev~~ 216 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQR----ARSE---ESCVPL-KYLQELHELHEDWLIHQRRPQ-SCKVLVLDADLNLENIGT 216 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCGG---GTTCCH-HHHHHHHHHHHHHHTSCCSSC-CCEEEEEECCC-------
T ss_pred CCCEEEEEeCCHHHHHHHHHHc----CCcc---cccCcH-HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCHHHHHH
Confidence 4678999999999876522234 3221 122221 122222222 12222 22 234 3445679999999
Q ss_pred HHHHHHhcc
Q 016625 365 VVLRLYHDR 373 (386)
Q Consensus 365 ~Il~~~~~r 373 (386)
.|.+.+...
T Consensus 217 ~I~~~l~~~ 225 (230)
T 2vp4_A 217 EYQRSESSI 225 (230)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999988653
No 464
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=23.27 E-value=1.3e+02 Score=24.70 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=35.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016625 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (386)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p 204 (386)
+|+..=+++.....+...|..++||++.+ ..--..|....|.+.
T Consensus 46 VilA~D~~~~~~~~i~~~c~~~~ipv~~~-~~s~~eLG~A~Gk~~ 89 (112)
T 3iz5_f 46 IILANNCPPLRKSEIETYAMLAKISVHHF-HGNNVDLGTACGKYY 89 (112)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCCEECC-CCTTCTHHHHHCTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCcEEEe-CCCHHHHHHHhCCcc
Confidence 66677778999999999999999999986 334556777778753
No 465
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=23.19 E-value=28 Score=32.07 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 28 v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEECSTTCSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 6799999999998765444
No 466
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=23.17 E-value=27 Score=31.57 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999877776
No 467
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=23.17 E-value=24 Score=32.93 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred EEE--EccCCCCCChhhHHhhhc----------Cceeeeccc
Q 016625 249 IIL--SGVSRTGKTPLSIYLAQK----------GYKVANVPI 278 (386)
Q Consensus 249 IVL--vGVSRTsKTPlSiYLA~~----------G~KVAN~PL 278 (386)
++| .|.+|||||=|.-.+++. ++.+.-+..
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 555 699999999999998842 566665554
No 468
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=23.16 E-value=23 Score=36.64 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..|+|+|.++||||=+.-++|+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTT
T ss_pred cceEEECCCchHHHHHHHHHHHh
Confidence 47999999999999999999965
No 469
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=23.16 E-value=5.1e+02 Score=24.91 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEE-cC---
Q 016625 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYT-LA--- 166 (386)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~---~iV~~T-lv--- 166 (386)
...++.|++|-|.-+.. ..++.-...+..+ ++++..+.||-=-+.+++.+.|+++.++. +|+++- |-
T Consensus 36 ~~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~i 109 (300)
T 4a26_A 36 RVPGLASIIVGQRMDSK--KYVQLKHKAAAEV----GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHL 109 (300)
T ss_dssp CCCEEEEEEESCCHHHH--HHHHHHHHHHHHT----TCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTS
T ss_pred CCceEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCC
Confidence 34567888888776543 3344333333332 25678888988889999999999986653 555543 22
Q ss_pred -CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCC
Q 016625 167 -DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQ 245 (386)
Q Consensus 167 -d~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~ 245 (386)
...+.+.+. -+. =+|-|.|+ +.-.-..|.. .+|. +.-.-..=|+.+++. .-+|.
T Consensus 110 d~~~v~~~I~---p~K---DVDG~~~~-N~G~l~~g~~-------~~~~---~PcTp~gv~~lL~~~--------~i~l~ 164 (300)
T 4a26_A 110 NENRAIEKIH---PHK---DADALLPV-NVGLLHYKGR-------EPPF---TPCTAKGVIVLLKRC--------GIEMA 164 (300)
T ss_dssp CHHHHHHTSC---GGG---CTTCCSHH-HHHHHHCTTC-------CCSC---CCHHHHHHHHHHHHH--------TCCCT
T ss_pred CHHHHHhhCC---ccc---ccccCCcc-eEEEeecCCC-------cCCC---CCCCHHHHHHHHHHc--------CCCCC
Confidence 123333332 233 34667765 2212223320 1221 123333444455542 13677
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceee
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~G~KVA 274 (386)
.+.+++||-|+.==.|+++.|+++|..|-
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt 193 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKENATVT 193 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 89999999999655699999999997653
No 470
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.15 E-value=25 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.-++|+|.++||||=+.-.||+.
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999964
No 471
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.14 E-value=26 Score=31.62 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016625 248 DIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA~ 268 (386)
=++|.|..|+|||=|.-.+++
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHH
Confidence 489999999999999988884
No 472
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=23.13 E-value=28 Score=29.68 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
+.|+|.+++|||=|.=-|+.
T Consensus 36 v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999998888873
No 473
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=23.07 E-value=27 Score=34.60 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
+.|+|.|+||||=|.--||-
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 67999999999999888873
No 474
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=23.06 E-value=40 Score=32.89 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=16.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
|||||-|++|||=+..++.
T Consensus 2 IvllGdsgvGKTSLl~~~~ 20 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVF 20 (331)
T ss_dssp EEEECSTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999876654
No 475
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=23.04 E-value=31 Score=29.59 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+|||-+.+|||=|.-.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999998888754
No 476
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.93 E-value=1.9e+02 Score=27.26 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHccCCCCccCCccceeEEeccc-cCCHHHHHHHHHHH----HhCC--CEEEEEcCCHHH-HHHHHHHHH
Q 016625 108 GWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSG-IDDVEQLMVIIKQA----AKDG--AMLVYTLADPSM-AESAKKACE 179 (386)
Q Consensus 108 GeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~-V~t~e~l~~il~~a----~~~~--~iV~~Tlvd~el-r~~l~~~~~ 179 (386)
|.=.-+++|+++.++|..++-+ --+.-++|| -++.+++.+.+.++ .+.| .||+..-....+ -+.|++
T Consensus 33 GvGGLtv~~~i~~~lP~e~~iy--~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~--- 107 (274)
T 3uhf_A 33 GVGGLSVLKSLYEARLFDEIIY--YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRA--- 107 (274)
T ss_dssp SSTTHHHHHHHHHTTCCSEEEE--EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHH---
T ss_pred CCChHHHHHHHHHHCCCCCEEE--EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHH---
Confidence 4445678999999999742100 002224555 46888888775543 3444 477765554443 344444
Q ss_pred HcCCCEeecchHHHHHHHHHh
Q 016625 180 LWGIPSTDVLGPITEAIASHL 200 (386)
Q Consensus 180 ~~~i~~vDll~p~i~~le~~l 200 (386)
..+||++.+++|.+......+
T Consensus 108 ~~~iPvigiiepa~~~a~~~~ 128 (274)
T 3uhf_A 108 KAHFPVYGVIDAGVEATIKAL 128 (274)
T ss_dssp HCSSCEECSHHHHHHHHHHHH
T ss_pred hcCCCEEcCCHHHHHHHHHhc
Confidence 347999999999999988763
No 477
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=22.91 E-value=89 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=33.6
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 47 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s--k~eLG~a~G~~ 89 (119)
T 1rlg_A 47 VYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKS--KNDLGRAVGIE 89 (119)
T ss_dssp EEEESCCSCSTTTTHHHHHHHHHTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEeCCCChHHHHHHHHHHHHHcCCCEEEeCC--HHHHHHHhCCC
Confidence 445555666 5789999999999999987654 67899999987
No 478
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=22.76 E-value=27 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PLV 279 (386)
|+|||-+.+|||=|--.|.+....++|+|.+
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~~~~~~~p~t 33 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFT 33 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC-----------
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 7899999999998777777544788899865
No 479
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=22.73 E-value=28 Score=34.56 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|+||||=|.--||
T Consensus 32 ~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 5699999999999887777
No 480
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=22.72 E-value=1.5e+02 Score=25.93 Aligned_cols=29 Identities=3% Similarity=-0.191 Sum_probs=20.3
Q ss_pred cCccEEEEEeCC--hHHHHHHHHHHHHccCC
Q 016625 95 MEGKSIYMVSDG--TGWTAEHAVNAALGQFE 123 (386)
Q Consensus 95 ~~~~~IfiVSDs--TGeTAe~v~~AaLaQF~ 123 (386)
|....|.+|+-| .+-.-..++++++.+++
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~ 34 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIAP 34 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHcc
Confidence 444678888777 45556678888888885
No 481
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=22.67 E-value=34 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.--|+++|-+.+|||=+.-.|.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999988877743
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=22.61 E-value=33 Score=31.66 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016625 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (386)
Q Consensus 248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~ 276 (386)
-+-|+|..+||||-.|-.|| .+|+..-+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 46799999999999999999 568776654
No 483
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=22.58 E-value=29 Score=33.69 Aligned_cols=30 Identities=30% Similarity=0.244 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016625 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~~G~KVAN~PL 278 (386)
|+|||.+.+|||=|--.|+.....+.++|.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~ 211 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC---------
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcc
Confidence 889999999999998888866566666654
No 484
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.47 E-value=35 Score=35.62 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
..-++|.|.++||||=++-.||+.
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999943
No 485
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=22.47 E-value=72 Score=33.76 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=47.5
Q ss_pred hH-HHHHHHHHHHHccCCCCccCCccceeEEec--cc----cC-------CHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Q 016625 107 TG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLF--SG----ID-------DVEQLMVIIKQAAKDGAMLVYTLADPSMAE 172 (386)
Q Consensus 107 TG-eTAe~v~~AaLaQF~~~~~d~~~~~~~~~~--p~----V~-------t~e~l~~il~~a~~~~~iV~~Tlvd~elr~ 172 (386)
.| --|+.+++.+...+|++ +++.+.. |. +. +.+.+.+++++ --+||-+.-+.+.|.
T Consensus 378 vG~~KAeaaa~~L~~iNP~v------~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~----~DvVvdatDn~~tR~ 447 (598)
T 3vh1_A 378 CGKPKAELAAASLKRIFPLM------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE----HDIIFLLVDSRESRW 447 (598)
T ss_dssp CSSBHHHHHHHHHHHHCTTC------EEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHH----CSEEEECCSBGGGTH
T ss_pred cCcHHHHHHHHHHHhHCCCc------EEEEEeccccccCcccccccccccCHHHHHHHHhc----CCEEEECCCCHHHHH
Confidence 35 35777777777778874 3333321 11 21 23344444433 248999999999999
Q ss_pred HHHHHHHHcCCCEeec
Q 016625 173 SAKKACELWGIPSTDV 188 (386)
Q Consensus 173 ~l~~~~~~~~i~~vDl 188 (386)
.+.+.|.++++|+|+.
T Consensus 448 lin~~c~~~~~plI~a 463 (598)
T 3vh1_A 448 LPSLLSNIENKTVINA 463 (598)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCCEEEE
Confidence 9999999999999973
No 486
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=22.44 E-value=88 Score=25.81 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=33.4
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=+++ ++...+...|++++||++-+.+ -..|...+|..
T Consensus 48 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s--k~eLG~a~G~~ 90 (124)
T 2fc3_A 48 VVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS--KKRLGEAAGIE 90 (124)
T ss_dssp EEEETTCSSGGGTTTHHHHHHHTTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEcCCCChHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCC
Confidence 444555666 5789999999999999987654 67899999987
No 487
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=22.43 E-value=29 Score=29.70 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016625 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 217 ~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~ 268 (386)
..-+-||+-+..-+ .+......-|++||-+.+|||=|.-.|.+
T Consensus 14 ~~~~~~~~~~~~~~---------~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 14 GTENLYFQSMAGEE---------APPGVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp ---------------------------CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cccccccccccccc---------CCCCcceEEEEEECcCCCCHHHHHHHHHc
Confidence 34466887765433 23334456799999999999999888874
No 488
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=22.42 E-value=90 Score=25.71 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016625 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (386)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~~ 203 (386)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 49 ViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s--k~eLG~a~G~~ 91 (120)
T 1xbi_A 49 VIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS--KQDLGKAAGLE 91 (120)
T ss_dssp EEEESCCSSGGGTTTHHHHHHHHTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEcCCCChHHHHHHHHHHHHhcCCCEEEeCC--HHHHHHHhCCC
Confidence 555566777 4789999999999999987654 67899999987
No 489
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.40 E-value=34 Score=30.28 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016625 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~----~G~KVAN~ 276 (386)
+++.|...+|||=..+.+|+ +|+||.=+
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 67899999999999999983 48888765
No 490
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=22.38 E-value=42 Score=29.92 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=24.8
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016625 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 227 eAIEFAlkhDDG~~p~~L~~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
+|++..++. -+++|+|..++|||=+.+.++..
T Consensus 100 ~ai~~~~~~-----------~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 100 KALERWLVD-----------KRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp HHHHHHTTT-----------SEEEEEESSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-----------CCEEEEeCCCCCHHHHHHHHHHH
Confidence 567765543 24999999999999999888843
No 491
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.35 E-value=1.1e+02 Score=25.74 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=33.6
Q ss_pred EEEEEcCC-HHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCC
Q 016625 160 MLVYTLAD-PSMAESAKKACELWGIPSTDVLGPITEAIASHLGV 202 (386)
Q Consensus 160 iV~~Tlvd-~elr~~l~~~~~~~~i~~vDll~p~i~~le~~lG~ 202 (386)
+|+..=++ +++...+...|.+++||++-+ +-...|....|.
T Consensus 44 ViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v--~sk~~LG~a~G~ 85 (126)
T 2xzm_U 44 VCVAEDCDQGNYVKLVKALCAKNEIKYVSV--PKRASLGEYLGH 85 (126)
T ss_dssp EEEESSCCSTTHHHHHHHHHHHTTCCEEEE--SCSHHHHHHHTC
T ss_pred EEEeCCCChHHHHHHHHHHHHHhCCCEEEE--CCHHHHHHHHCC
Confidence 55556676 499999999999999999965 367789999997
No 492
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=22.06 E-value=30 Score=31.52 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=16.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 27 ~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999999887777
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.05 E-value=29 Score=32.13 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4599999999998877666
No 494
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.05 E-value=1.6e+02 Score=25.57 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=31.0
Q ss_pred EEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016625 135 THLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDV 188 (386)
Q Consensus 135 ~~~~p~V~t~e~l~~il~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~~i~~vDl 188 (386)
+..+..-.+.++..+.++.+...+ +||++.....++.+.++. +.+.|+|+|-+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~-~~~~~iPvV~~ 89 (290)
T 2fn9_A 35 ATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKR-AKEAGIPVFCV 89 (290)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHH-HHHTTCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH-HHHCCCeEEEE
Confidence 334433346666666666654433 688776544444445543 45679999875
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.96 E-value=29 Score=35.46 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016625 249 IILSGVSRTGKTPLSIYLAQ 268 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA~ 268 (386)
++|+|.++||||=|.-.+|+
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999984
No 496
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.91 E-value=33 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016625 246 KADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
.--|+|+|-+++|||=+.-.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999988888754
No 497
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.84 E-value=29 Score=31.85 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|++|||=|.--|+
T Consensus 35 ~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4699999999999877776
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=21.74 E-value=29 Score=34.03 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.2
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016625 249 IILSGVSRTGKTPLSIYLA 267 (386)
Q Consensus 249 IVLvGVSRTsKTPlSiYLA 267 (386)
+.|+|.|+||||=|--=||
T Consensus 33 ~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHh
Confidence 5699999999998876666
No 499
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=21.71 E-value=1.8e+02 Score=24.90 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=47.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCE-eecch---HH--HHHHHHHhCCCCC-CCCCC---CCCCCCCCcHHHHhhhhh
Q 016625 159 AMLVYTLADPSMAESAKKACELWGIPS-TDVLG---PI--TEAIASHLGVSPS-GLPRG---APGRNFPLSEEYFRRIEA 228 (386)
Q Consensus 159 ~iV~~Tlvd~elr~~l~~~~~~~~i~~-vDll~---p~--i~~le~~lG~~p~-~~~~~---~pG~~~~ld~~YF~RIeA 228 (386)
.++||-....+.-+.+.+.|+++|+.+ +++++ |- +..++. .|..=- -.+.. .+|. .... ++.+++-.
T Consensus 80 ~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~-~g~d~v~~~~~~~~~~~g~-~~~~-~~i~~~~~ 156 (207)
T 3ajx_A 80 LVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA-LGAKFVEMHAGLDEQAKPG-FDLN-GLLAAGEK 156 (207)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-TTCSEEEEECCHHHHTSTT-CCTH-HHHHHHHH
T ss_pred EEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH-hCCCEEEEEecccccccCC-CchH-HHHHHhhC
Confidence 466777777555556666777777776 66652 21 233332 343211 00000 1231 1122 33333332
Q ss_pred hhhhhhCCCCCCCCCCCc-----CcEEEEc
Q 016625 229 IEFTIKQDDGALPQNLQK-----ADIILSG 253 (386)
Q Consensus 229 IEFAlkhDDG~~p~~L~~-----ADIVLvG 253 (386)
.++-+--+-|.++++..+ ||.|.||
T Consensus 157 ~~~pi~v~GGI~~~~~~~~~~aGad~vvvG 186 (207)
T 3ajx_A 157 ARVPFSVAGGVKVATIPAVQKAGAEVAVAG 186 (207)
T ss_dssp HTSCEEEESSCCGGGHHHHHHTTCSEEEES
T ss_pred CCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 234455677888777655 7888887
No 500
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=21.70 E-value=35 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016625 247 ADIILSGVSRTGKTPLSIYLAQK 269 (386)
Q Consensus 247 ADIVLvGVSRTsKTPlSiYLA~~ 269 (386)
--|+|+|.+.+|||=|.-.|.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999998888743
Done!