BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016627
(386 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DUP|A Chain A, Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FROM
RHODOSPIRILLUM Rubrum Atcc 11170
pdb|3DUP|B Chain B, Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FROM
RHODOSPIRILLUM Rubrum Atcc 11170
Length = 300
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 164/288 (56%), Gaps = 10/288 (3%)
Query: 95 YFEKIKICNRGSEMQSEFFPFIIEDQVVGYTHNRFASHLRKYDDVFIYSENNGGRFGSHL 154
+ + ++ CN + S F F+IE + VG+ A L+ + VF + + +
Sbjct: 5 FLKHVQDCN--THDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDA-------V 55
Query: 155 KLNSKLKTADERTRVVGEVIKCLGEEDLIPGIRNELYPVTSTFGSPIFFSLERAAAPYFG 214
L++ L+T RTR V +V+ L +E ++P R ELY V ++G P L+RA P FG
Sbjct: 56 LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLXLLDRAVVPTFG 115
Query: 215 IKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEE 274
++AYGVH+NGYV LWIG+RS K PG LD+ VAGG P ++ +N+IKEC E
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNXVAGGQPADLSLRQNLIKECAE 175
Query: 275 EAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIP 334
EA +P +++ +A PVGA++Y + K D LF YDL LPEDF P N DGE F L P
Sbjct: 176 EADLPEALARQAIPVGAITYCXESPAGIKPDTLFLYDLALPEDFRPHNTDGEXADFXLWP 235
Query: 335 VAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICPEYF-GYLDLLQSLR 381
A V +R T FK N +L +IDF RHG I P+ Y ++L LR
Sbjct: 236 AAKVVEAVRTTEAFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLR 283
>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
Protein From D. Radiodurans
pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
Length = 171
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 228 KDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRAR 287
++ Q LWI +RS K +P LD V G + G E +E EE +
Sbjct: 42 RNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV--------- 92
Query: 288 PVGAVSYMDINGFS 301
+ A+S+ + FS
Sbjct: 93 EIDALSWRPLASFS 106
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 204 SLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIA 263
+LE+ AA + +DGQ L + +RS K +PG+ + V G G
Sbjct: 21 TLEKYAAHTLNTPLHLAFSCWLFNEDGQ--LLVTRRSLSKKAWPGVWTNSVCGHPQQGET 78
Query: 264 CGENIIKECEEEAGI 278
E II+ C E G+
Sbjct: 79 TEEAIIRRCRFELGV 93
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 255 AGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDING 299
+GG H I C NI EC E +P +N G Y G
Sbjct: 116 SGGKCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQG 160
>pdb|4AE4|A Chain A, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
pdb|4AE4|B Chain B, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
Length = 118
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 356 IIDFLFRHGYICPEYFGYLDLLQSLRSGDCS 386
I+D+LF HG +C + F L + ++L CS
Sbjct: 39 ILDYLFAHGQLCEKGFDPLLVEEALEXHQCS 69
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 221 HMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPR 280
M G+ + QK+ W+ K ++H+ GG GI G ++ E+AG +
Sbjct: 234 EMGGFDDVALQKYHWVEK-----------INHVHTGGNSSGIVDGAALVLVGSEKAGKSQ 282
Query: 281 SISNRARPVGAVS 293
++ RAR V +
Sbjct: 283 GLTPRARIVATAT 295
>pdb|3M8L|B Chain B, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 530
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 17 PSLHNFKASDAFTNKSLITTFPVRFSFHSSAKLTTS 52
PS+ A+D T KS+ + + FSFH+S +TS
Sbjct: 14 PSVQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTS 49
>pdb|3M8L|A Chain A, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
pdb|3M8L|C Chain C, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 534
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 17 PSLHNFKASDAFTNKSLITTFPVRFSFHSSAKLTTS 52
PS+ A+D T KS+ + + FSFH+S +TS
Sbjct: 18 PSVQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTS 53
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 115 FIIEDQVVGYTHNRFASHLRKYD-DVFIYSENNGGRFGSHLKLNSKLKTADERTRVV--- 170
I +D + G TH F LRK+ +V G HLK N TR+V
Sbjct: 40 LISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPN---------TRIVYFE 90
Query: 171 ---GEVIKCLGEEDLIPGIRNE---LYPVTSTFGSPIF 202
+K + ED + R + L V +TF SPI
Sbjct: 91 TPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,989,692
Number of Sequences: 62578
Number of extensions: 512448
Number of successful extensions: 1149
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 11
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)