BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016627
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20
PE=2 SV=1
Length = 374
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/388 (59%), Positives = 286/388 (73%), Gaps = 16/388 (4%)
Query: 1 MASNVQHLTQTIRLSFPSLHNFKASDAFTNKSLITTFPVRFSFHSSAKLTTSIRSLPVAT 60
MAS L T+ S S H A T + L P+ + SS+ + +R +
Sbjct: 1 MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49
Query: 61 ASISYRSSCTFTWDDVVRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
A+ + S +FTWDDV+ + EY +SSDL G+FEKI CNRGSE EF PF+IE+Q
Sbjct: 50 AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106
Query: 121 VVGYTHNRFASHLRKYDDVFIYSENNG--GRFGSHLKLNSKLKTADERTRVVGEVIKCLG 178
+VGY H RF +LR++ D+F +S+N R ++ LN L+ ++RTR V +VIK LG
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166
Query: 179 EEDLIPGIRNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGK 238
++ +IPGIRNELYPV +F +P+FFSLERAAAPYFGIK YGVHMNGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226
Query: 239 RSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298
RS K TYPGMLDHLVAGGLPHGI+CG N++KECEEEAGI R+I++RA VGAVSY+DI+
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDID 286
Query: 299 GFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIID 358
+ +KRDVLFCYDL+LPEDFVPKNQDGEVESF+LIPVA VA+VI++T FFK NCSLVIID
Sbjct: 287 QYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVIKKTSFFKANCSLVIID 346
Query: 359 FLFRHGYICPEYFGYLDLLQSLRSGDCS 386
FLFRHG+I PE GYLDL Q LR+ DCS
Sbjct: 347 FLFRHGFIRPESSGYLDLYQRLRNRDCS 374
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24
PE=2 SV=1
Length = 365
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/333 (61%), Positives = 253/333 (75%), Gaps = 9/333 (2%)
Query: 54 RSLPVATASISYRSSCTFTWDDVVRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFF 113
R L V T +S +FTW+DV S+ EY P +SSDL G+ EK+ CNRG E EF
Sbjct: 42 RVLSVETVPLS----PSFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFI 97
Query: 114 PFIIEDQVVGYTHNRFASHLRKYDDVFIYSENNGGRFGSHLKLNSKLKTADERTRVVGEV 173
PF+IE+Q+VGY H F +LR ++D+F +S+ +G H+ LN L +ERTR V V
Sbjct: 98 PFVIEEQIVGYIHKGFTKYLRDFNDIFTFSQ-----YGGHVTLNMMLDKPEERTRAVAHV 152
Query: 174 IKCLGEEDLIPGIRNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKF 233
IK LG + +IPGIRNELYPV +F +P FFS+ERAAAPYFG+K Y +H+NGYVE+DGQKF
Sbjct: 153 IKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKF 212
Query: 234 LWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS 293
LWIGKRS K TYPG LDHLVAGGLPHGI+ EN++KECEEEAGI + +++RA VG VS
Sbjct: 213 LWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVS 272
Query: 294 YMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCS 353
YMDI+ + + RDVLFCYDL+LP+DFVP NQDGEV+SF+LIPVA VANV+R+T FFK +CS
Sbjct: 273 YMDIDRYCFTRDVLFCYDLELPQDFVPTNQDGEVDSFRLIPVAQVANVVRKTSFFKDSCS 332
Query: 354 LVIIDFLFRHGYICPEYFGYLDLLQSLRSGDCS 386
LVIIDFLFRHG I PE GYLDL + LR+GDCS
Sbjct: 333 LVIIDFLFRHGLIRPESPGYLDLYRRLRNGDCS 365
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1
Length = 342
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 138/247 (55%), Gaps = 21/247 (8%)
Query: 152 SHLKLNSKLKTADERTRVVGEVIKCLGEEDLIPGI---RNELYPVTSTFGSPIFFSLERA 208
S +L K + D R ++ ++ + + E + G+ RNE Y V + +ERA
Sbjct: 89 SRHELRFKSEDFDHRNNLIDQLARKMYLESSLSGVKGWRNEKYAVW--VNKKPYVLVERA 146
Query: 209 AAPYFGIKAYGVHMNGYV--EKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGE 266
A GI YG+H+NGYV K + W+ +RS+ K T+P MLD+++AGGL + E
Sbjct: 147 VAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIYE 206
Query: 267 NIIKECEEEAGIPRS-ISNRARPVGAVSYMDING------FSYKRD-----VLFCYDLKL 314
++KE EEA + +S I + + G+VSY+ G F+ + D V + YDLKL
Sbjct: 207 TVLKESMEEANLEKSVIEDNIKATGSVSYLYFTGDISVTKFNKESDFIVGEVQYVYDLKL 266
Query: 315 PEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICPEYF-GY 373
ED +PK DGEVESF L + N +R+ FKPNC+LV++DFL RHGYI PE Y
Sbjct: 267 SEDIIPKPNDGEVESFNLFSLQETINALRKKE-FKPNCALVMVDFLIRHGYITPENEPNY 325
Query: 374 LDLLQSL 380
L+L+ +
Sbjct: 326 LELVTRM 332
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 11/236 (4%)
Query: 151 GSHLKLNSKLKTADERTRVVGEVIKCLGEED---LIPGIRNELYPVTSTFGSPIFFSLER 207
G ++++N+ T ++RT ++ +V++ + + RNELY V P+ ++ER
Sbjct: 68 GEYIEINAS--TFEKRTDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVL-AVER 124
Query: 208 AAAPYFGIKAYGVHMNGYV--EKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACG 265
FG + GVH Y+ K+ +W+ +RS K T+P LD+ VAGG+ HG +
Sbjct: 125 GGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVI 184
Query: 266 ENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSY-KRDVLFCYDLKLPEDFVPKNQD 324
+IKE EEA + S N P G VSY+ + + + ++ + +DL + + +P+ D
Sbjct: 185 GTMIKEFSEEANLDVSSMNLI-PCGTVSYIKMEKRHWIQPELQYVFDLPVDDLVIPRIND 243
Query: 325 GEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSL 380
GEV F L+P+ V + + FKPNC+LV++DFL RHG I P++ YL L+ +
Sbjct: 244 GEVAGFSLLPLNQVLHELELKS-FKPNCALVLLDFLIRHGIITPQHPQYLQTLERI 298
>sp|Q8NHP7|EXD1_HUMAN Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens
GN=EXD1 PE=2 SV=4
Length = 514
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 335 VAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSL 380
VA V TG + PNC + + L +H + P+Y +L+ Q L
Sbjct: 183 VADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKL 228
>sp|A9MRI5|IDI_SALAR Isopentenyl-diphosphate Delta-isomerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=idi PE=3
SV=1
Length = 182
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 204 SLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIA 263
+LE+ AA + +DGQ L + +RS K +PG+ + V G G A
Sbjct: 18 TLEKYAAHTLNTPLHLAFSCWLFNEDGQ--LLVTRRSLSKKAWPGVWTNSVCGHPQQGEA 75
Query: 264 CGENIIKECEEEAGI 278
E II+ C E G+
Sbjct: 76 IEEAIIRRCRFELGV 90
>sp|Q9RY71|Y079_DEIRA Nudix hydrolase DR_0079 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_0079 PE=1 SV=1
Length = 171
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 228 KDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRAR 287
++ Q LWI +RS K +P LD V G + G E +E EE +
Sbjct: 42 RNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV--------- 92
Query: 288 PVGAVSYMDINGFS 301
+ A+S+ + FS
Sbjct: 93 EIDALSWRPLASFS 106
>sp|P74759|RGYR_SULSH Reverse gyrase OS=Sulfolobus shibatae GN=rgy PE=3 SV=1
Length = 1166
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 309 CYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYIC 367
Y+L L E PK G+ S QL+ + V ++++ G +P+ I+ L RHGYI
Sbjct: 1034 VYNLPLGE-VKPKVNTGKGSSEQLLSYSDVISLMKSKGIGRPSTYAKTIENLVRHGYIV 1091
>sp|Q4VAC9|PKHG3_MOUSE Pleckstrin homology domain-containing family G member 3 OS=Mus
musculus GN=Plekhg3 PE=1 SV=2
Length = 1341
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 14 LSFPSLHNFKASDAFTNKS--LITTFPVRFSFHSSA--KLTTSIRSLPVATASISYRSSC 69
LS S A + T+KS + T P RFSF SA TTS + A + +S +
Sbjct: 1104 LSLLSYEQLVAQEHGTSKSSAAVETSPRRFSFSPSAVSPRTTSPGARSSARSPLSPFDTE 1163
Query: 70 TFTWDDVVRVSQPEYSPDDSSDLRGYFEKIKICNR 104
TF W DV + S D ++ + + + + NR
Sbjct: 1164 TFNWPDVRELCSKYTSHDKTAQVESSWPRSLLVNR 1198
>sp|Q4LAB1|COPB_STAHJ Probable copper-transporting P-type ATPase B OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=copB PE=3 SV=2
Length = 674
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 277 GIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVA 336
G+ I N+ + VSY+D +GF Y D+ F+ Q G S+ LI
Sbjct: 437 GLEGLIDNKTYKITNVSYLDQHGFEYDNDL-----------FIKLAQQGNSISY-LIEDQ 484
Query: 337 HVANVIRRTGFFKPNCSLVIIDFLFRH 363
V +I + K + ++ D L RH
Sbjct: 485 QVIGMIAQGDQIKESSKQMVADLLSRH 511
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,681,967
Number of Sequences: 539616
Number of extensions: 6558021
Number of successful extensions: 13905
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13890
Number of HSP's gapped (non-prelim): 13
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)