Query 016627
Match_columns 386
No_of_seqs 293 out of 1475
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02839 nudix hydrolase 100.0 2.1E-93 4.4E-98 706.8 35.6 336 51-386 35-372 (372)
2 KOG4313 Thiamine pyrophosphoki 100.0 3.5E-59 7.7E-64 436.5 18.1 280 93-383 11-299 (306)
3 cd03676 Nudix_hydrolase_3 Memb 100.0 4E-43 8.7E-48 319.3 21.4 178 185-364 1-180 (180)
4 cd02885 IPP_Isomerase Isopente 99.9 1.3E-24 2.8E-29 195.4 16.3 158 188-353 1-161 (165)
5 PLN02552 isopentenyl-diphospha 99.9 2.5E-24 5.4E-29 206.3 18.5 170 187-362 21-226 (247)
6 PLN02791 Nudix hydrolase homol 99.9 1E-24 2.2E-29 235.4 17.6 161 187-352 2-170 (770)
7 PRK03759 isopentenyl-diphospha 99.9 3.2E-24 7E-29 196.4 17.5 172 187-366 4-178 (184)
8 TIGR02150 IPP_isom_1 isopenten 99.9 5.2E-24 1.1E-28 190.6 17.8 151 191-351 1-153 (158)
9 PRK15393 NUDIX hydrolase YfcD; 99.9 6.3E-23 1.4E-27 187.7 17.7 161 187-363 8-168 (180)
10 cd04692 Nudix_Hydrolase_33 Mem 99.9 1.3E-22 2.8E-27 177.8 14.2 135 216-351 1-138 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.8 9.8E-20 2.1E-24 156.1 12.9 123 219-354 2-124 (126)
12 COG1443 Idi Isopentenyldiphosp 99.8 3.2E-20 6.9E-25 167.4 10.1 166 188-359 3-172 (185)
13 cd04693 Nudix_Hydrolase_34 Mem 99.8 8.4E-19 1.8E-23 149.8 13.1 125 219-355 2-126 (127)
14 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 1E-15 2.3E-20 131.9 15.5 134 218-364 3-137 (137)
15 cd03426 CoAse Coenzyme A pyrop 99.6 9E-16 1.9E-20 137.0 11.2 116 217-341 2-118 (157)
16 cd04682 Nudix_Hydrolase_23 Mem 99.6 2.5E-15 5.3E-20 127.7 12.0 102 233-342 13-115 (122)
17 cd04664 Nudix_Hydrolase_7 Memb 99.6 3.1E-15 6.8E-20 127.9 12.7 118 219-344 3-121 (129)
18 PRK15472 nucleoside triphospha 99.6 7.4E-15 1.6E-19 127.9 12.6 114 218-341 4-125 (141)
19 KOG0142 Isopentenyl pyrophosph 99.6 1.9E-15 4.2E-20 139.0 7.8 169 189-362 20-205 (225)
20 PF00293 NUDIX: NUDIX domain; 99.6 9.2E-15 2E-19 123.5 10.9 120 217-344 2-122 (134)
21 cd04684 Nudix_Hydrolase_25 Con 99.6 3.6E-14 7.8E-19 119.8 13.6 110 226-343 7-119 (128)
22 PRK09438 nudB dihydroneopterin 99.6 3.8E-14 8.2E-19 124.4 13.1 128 219-362 9-145 (148)
23 cd04683 Nudix_Hydrolase_24 Mem 99.6 7E-14 1.5E-18 117.7 13.1 110 225-343 6-116 (120)
24 cd03673 Ap6A_hydrolase Diadeno 99.5 1.9E-13 4E-18 115.9 15.2 112 222-343 6-118 (131)
25 cd03675 Nudix_Hydrolase_2 Cont 99.5 3.3E-13 7.1E-18 116.0 16.1 128 224-364 5-132 (134)
26 cd04694 Nudix_Hydrolase_35 Mem 99.5 1.5E-13 3.2E-18 121.7 14.2 112 232-344 13-134 (143)
27 cd04673 Nudix_Hydrolase_15 Mem 99.5 2.7E-13 5.8E-18 113.7 13.3 108 225-342 6-115 (122)
28 cd04691 Nudix_Hydrolase_32 Mem 99.5 1.7E-13 3.7E-18 116.2 12.1 105 226-344 7-111 (117)
29 cd04679 Nudix_Hydrolase_20 Mem 99.5 2.6E-13 5.5E-18 115.4 13.0 103 233-343 15-117 (125)
30 cd03671 Ap4A_hydrolase_plant_l 99.5 4.3E-13 9.4E-18 118.0 13.2 117 219-343 5-133 (147)
31 cd04681 Nudix_Hydrolase_22 Mem 99.5 3.4E-13 7.3E-18 115.1 12.1 111 219-339 3-113 (130)
32 cd04688 Nudix_Hydrolase_29 Mem 99.5 7E-13 1.5E-17 112.9 13.8 104 226-340 8-117 (126)
33 cd04700 DR1025_like DR1025 fro 99.5 6.8E-13 1.5E-17 116.5 14.1 106 233-349 26-132 (142)
34 cd03427 MTH1 MutT homolog-1 (M 99.5 5.2E-13 1.1E-17 114.9 12.1 104 226-341 8-111 (137)
35 cd03428 Ap4A_hydrolase_human_l 99.5 9.1E-13 2E-17 112.2 13.4 110 224-344 9-118 (130)
36 cd04680 Nudix_Hydrolase_21 Mem 99.5 3.7E-13 7.9E-18 112.8 10.6 107 219-342 2-109 (120)
37 cd04677 Nudix_Hydrolase_18 Mem 99.5 4E-13 8.7E-18 114.6 11.0 112 219-343 9-124 (132)
38 cd04678 Nudix_Hydrolase_19 Mem 99.5 8.4E-13 1.8E-17 112.7 12.4 107 233-350 15-123 (129)
39 cd03430 GDPMH GDP-mannose glyc 99.5 1.7E-12 3.7E-17 114.5 14.5 115 219-341 14-132 (144)
40 cd04699 Nudix_Hydrolase_39 Mem 99.4 2.1E-12 4.6E-17 109.1 13.4 104 233-344 14-117 (129)
41 cd04689 Nudix_Hydrolase_30 Mem 99.4 3.4E-12 7.4E-17 108.5 14.6 103 225-338 7-111 (125)
42 PRK15434 GDP-mannose mannosyl 99.4 2.9E-12 6.3E-17 115.6 14.1 105 232-341 29-137 (159)
43 cd04696 Nudix_Hydrolase_37 Mem 99.4 2.3E-12 5E-17 109.7 12.5 99 233-341 15-114 (125)
44 cd04695 Nudix_Hydrolase_36 Mem 99.4 2.7E-12 5.8E-17 110.6 12.8 107 229-344 11-117 (131)
45 cd04687 Nudix_Hydrolase_28 Mem 99.4 8.4E-12 1.8E-16 106.7 13.5 107 226-341 8-121 (128)
46 cd02883 Nudix_Hydrolase Nudix 99.4 6.6E-12 1.4E-16 103.1 12.3 102 232-342 12-113 (123)
47 PRK00714 RNA pyrophosphohydrol 99.4 8E-12 1.7E-16 111.8 13.6 114 219-343 10-137 (156)
48 cd04666 Nudix_Hydrolase_9 Memb 99.4 1.4E-11 3E-16 105.9 14.1 106 229-344 12-118 (122)
49 cd03425 MutT_pyrophosphohydrol 99.4 7.7E-12 1.7E-16 104.0 12.1 97 232-340 13-109 (124)
50 cd03674 Nudix_Hydrolase_1 Memb 99.4 1.2E-11 2.5E-16 107.8 13.7 113 217-341 2-123 (138)
51 cd03429 NADH_pyrophosphatase N 99.3 8.8E-12 1.9E-16 107.9 11.4 96 232-341 12-107 (131)
52 PLN02325 nudix hydrolase 99.3 1.8E-11 4E-16 108.1 13.4 110 224-341 14-125 (144)
53 cd04685 Nudix_Hydrolase_26 Mem 99.3 1.5E-11 3.2E-16 107.5 12.5 115 219-341 2-123 (133)
54 PRK10707 putative NUDIX hydrol 99.3 1.6E-11 3.5E-16 113.7 13.2 106 229-342 41-147 (190)
55 PLN02709 nudix hydrolase 99.3 1.3E-11 2.7E-16 117.0 12.7 105 229-341 48-155 (222)
56 cd04670 Nudix_Hydrolase_12 Mem 99.3 2.7E-11 5.8E-16 103.3 12.6 98 232-340 14-112 (127)
57 cd04671 Nudix_Hydrolase_13 Mem 99.3 2.3E-11 5.1E-16 104.5 11.9 94 233-339 13-108 (123)
58 cd04672 Nudix_Hydrolase_14 Mem 99.3 3.2E-11 6.9E-16 102.6 11.9 102 228-342 11-113 (123)
59 cd04690 Nudix_Hydrolase_31 Mem 99.3 4.4E-11 9.5E-16 100.2 11.9 97 233-340 13-109 (118)
60 cd04676 Nudix_Hydrolase_17 Mem 99.3 3E-11 6.5E-16 101.5 10.8 99 232-341 14-117 (129)
61 PRK11762 nudE adenosine nucleo 99.3 1.6E-10 3.4E-15 106.1 16.1 108 233-350 60-167 (185)
62 PRK10776 nucleoside triphospha 99.3 6.4E-11 1.4E-15 99.9 12.4 100 229-340 13-112 (129)
63 PRK10546 pyrimidine (deoxy)nuc 99.3 9.4E-11 2E-15 100.6 12.9 97 233-341 16-112 (135)
64 cd04667 Nudix_Hydrolase_10 Mem 99.3 1.1E-10 2.3E-15 97.7 12.7 92 233-343 12-103 (112)
65 PRK00241 nudC NADH pyrophospha 99.2 1.8E-10 3.9E-15 111.5 14.7 95 233-341 144-238 (256)
66 cd04686 Nudix_Hydrolase_27 Mem 99.2 2.4E-10 5.2E-15 98.8 12.8 108 225-342 6-120 (131)
67 cd03672 Dcp2p mRNA decapping e 99.2 1.6E-10 3.5E-15 102.3 12.0 98 233-344 15-114 (145)
68 cd04661 MRP_L46 Mitochondrial 99.2 1.3E-10 2.7E-15 100.9 10.2 105 233-344 14-123 (132)
69 cd04669 Nudix_Hydrolase_11 Mem 99.2 2.3E-10 4.9E-15 97.5 11.0 94 233-341 13-114 (121)
70 TIGR00586 mutt mutator mutT pr 99.2 6.8E-10 1.5E-14 94.0 13.0 97 233-341 17-113 (128)
71 PRK10729 nudF ADP-ribose pyrop 99.1 1.4E-09 3E-14 101.8 16.1 107 248-363 82-192 (202)
72 TIGR00052 nudix-type nucleosid 99.1 6.4E-10 1.4E-14 102.6 13.1 103 246-357 75-180 (185)
73 cd04511 Nudix_Hydrolase_4 Memb 99.1 4.4E-10 9.4E-15 96.7 11.0 99 225-339 19-117 (130)
74 PRK05379 bifunctional nicotina 99.1 1.7E-09 3.6E-14 108.6 15.8 107 227-341 211-322 (340)
75 cd04662 Nudix_Hydrolase_5 Memb 99.1 1.4E-09 3E-14 94.9 12.4 105 225-335 8-126 (126)
76 TIGR02705 nudix_YtkD nucleosid 99.1 1.1E-08 2.3E-13 92.4 17.7 147 195-365 5-155 (156)
77 PRK15009 GDP-mannose pyrophosp 99.1 3.9E-09 8.5E-14 98.0 15.2 106 252-366 82-190 (191)
78 COG1051 ADP-ribose pyrophospha 99.1 1.7E-09 3.7E-14 96.1 11.9 113 220-343 11-124 (145)
79 KOG3069 Peroxisomal NUDIX hydr 99.0 2.1E-09 4.5E-14 101.7 9.7 117 219-341 45-163 (246)
80 PRK08999 hypothetical protein; 99.0 7.5E-09 1.6E-13 101.7 12.9 108 221-340 6-113 (312)
81 PLN03143 nudix hydrolase; Prov 98.9 8.7E-08 1.9E-12 94.4 19.7 131 229-366 140-287 (291)
82 COG2816 NPY1 NTP pyrophosphohy 98.9 2.1E-09 4.7E-14 104.5 6.2 97 233-344 156-253 (279)
83 cd04665 Nudix_Hydrolase_8 Memb 98.8 3.5E-08 7.5E-13 84.9 11.3 96 224-336 5-100 (118)
84 COG0494 MutT NTP pyrophosphohy 98.8 2.9E-08 6.2E-13 82.7 10.5 107 232-344 24-137 (161)
85 cd04663 Nudix_Hydrolase_6 Memb 98.8 5.6E-08 1.2E-12 84.8 11.6 51 223-280 4-55 (126)
86 KOG3084 NADH pyrophosphatase I 98.6 2E-08 4.3E-13 98.7 2.8 104 225-343 194-300 (345)
87 KOG3041 Nucleoside diphosphate 98.6 1.1E-06 2.3E-11 81.7 12.6 128 219-353 75-208 (225)
88 cd03670 ADPRase_NUDT9 ADP-ribo 98.5 7.8E-07 1.7E-11 82.5 10.6 105 229-340 46-170 (186)
89 cd04674 Nudix_Hydrolase_16 Mem 98.4 8E-06 1.7E-10 70.4 13.3 46 233-282 17-62 (118)
90 KOG2839 Diadenosine and diphos 98.2 7.2E-06 1.6E-10 72.8 8.1 103 231-344 23-128 (145)
91 cd03431 DNA_Glycosylase_C DNA 98.0 0.00014 3.1E-09 60.0 11.8 90 233-340 15-104 (118)
92 KOG0648 Predicted NUDIX hydrol 97.3 0.00011 2.3E-09 72.5 1.7 124 232-363 127-254 (295)
93 COG4112 Predicted phosphoester 96.4 0.015 3.2E-07 53.1 8.2 119 233-358 73-201 (203)
94 COG4119 Predicted NTP pyrophos 96.2 0.018 4E-07 50.5 7.0 111 247-366 35-153 (161)
95 PF14815 NUDIX_4: NUDIX domain 94.7 0.059 1.3E-06 45.1 5.2 93 233-340 10-102 (114)
96 KOG4195 Transient receptor pot 92.5 0.26 5.6E-06 47.1 5.7 40 232-277 139-178 (275)
97 KOG4432 Uncharacterized NUDIX 89.9 1.1 2.4E-05 44.8 7.4 89 252-345 287-380 (405)
98 KOG4432 Uncharacterized NUDIX 79.0 4.1 8.9E-05 40.8 5.6 88 252-344 82-172 (405)
99 PF13869 NUDIX_2: Nucleotide h 71.3 72 0.0016 30.0 11.4 107 220-340 46-169 (188)
100 KOG1202 Animal-type fatty acid 69.6 5.4 0.00012 46.8 4.3 63 219-282 225-295 (2376)
101 PF14443 DBC1: DBC1 62.5 35 0.00076 30.1 7.1 79 232-310 8-90 (126)
102 PF03487 IL13: Interleukin-13; 32.1 37 0.0008 24.2 1.9 22 255-276 15-36 (43)
103 PF08057 Ery_res_leader2: Eryt 27.6 33 0.00071 18.7 0.8 13 8-20 1-13 (14)
104 PRK10880 adenine DNA glycosyla 26.2 6.7E+02 0.015 25.7 10.7 39 233-280 243-281 (350)
105 KOG4548 Mitochondrial ribosoma 25.5 3.2E+02 0.0069 27.0 7.7 108 229-344 137-250 (263)
106 KOG1270 Methyltransferases [Co 24.1 34 0.00074 34.0 0.9 34 249-282 93-137 (282)
107 PLN03090 auxin-responsive fami 22.7 3.3E+02 0.0072 23.2 6.4 73 167-281 12-84 (104)
108 PF04433 SWIRM: SWIRM domain; 22.7 85 0.0018 25.0 2.8 33 332-367 53-85 (86)
109 KOG3904 Predicted hydrolase RP 20.7 38 0.00083 32.2 0.4 31 250-280 11-41 (209)
No 1
>PLN02839 nudix hydrolase
Probab=100.00 E-value=2.1e-93 Score=706.85 Aligned_cols=336 Identities=65% Similarity=1.179 Sum_probs=312.3
Q ss_pred eeecceeeeeeccccccccccchhhhhhccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeeeEEECCEEEeeecHHHH
Q 016627 51 TSIRSLPVATASISYRSSCTFTWDDVVRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVVGYTHNRFA 130 (386)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~cn~~~~~~~~~~pf~v~g~~vG~i~p~~~ 130 (386)
+.++..+-..+..++++++|||||||+|++++||.+++++++|+|+++|++||++...++.|.||+++|++||||+|.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf~v~gq~VG~I~~~~~ 114 (372)
T PLN02839 35 SPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFVIEEQIVGYIHKGFT 114 (372)
T ss_pred CCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCeEECCEEEEEECHHHH
Confidence 33444444556667788999999999999999999999999999999999999997667899999999999999999999
Q ss_pred HHhhcCCCeEEeecCCC--CcccceEEeccCCCCHHHHHHHHHHHHHHHHHCCCCCCcccceeeeccCCCCceeEEEEcc
Q 016627 131 SHLRKYDDVFIYSENNG--GRFGSHLKLNSKLKTADERTRVVGEVIKCLGEEDLIPGIRNELYPVTSTFGSPIFFSLERA 208 (386)
Q Consensus 131 ~~L~~~~~~f~~~~~~~--~~~~~~v~l~~~l~~~~~rt~~l~~v~~~lr~~g~l~gwr~El~dVyd~~g~~~l~~ieRa 208 (386)
++|.+|+++|.+..++. .....+|+|.+.+.++++||+++++++++||++|.++|||||+|+||+.+|.++++.|||+
T Consensus 115 ~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V~~~~~~~~l~~iERa 194 (372)
T PLN02839 115 EYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERA 194 (372)
T ss_pred HHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCccccccCCCCcceEEEeec
Confidence 99999999999864211 1123579999999999999999999999999999999999999999988888999999999
Q ss_pred cccccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCcee
Q 016627 209 AAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARP 288 (386)
Q Consensus 209 a~~~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~ 288 (386)
++++||+.+||||||||+..+|+.+|||+|||++|++|||||||+|||||.+||++.+|++|||+|||||+.++++++++
T Consensus 195 A~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~ 274 (372)
T PLN02839 195 AAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA 274 (372)
T ss_pred cccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE
Confidence 99999999999999999987788899999999999999999999999999999999999999999999999988878999
Q ss_pred eeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCCCC
Q 016627 289 VGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICP 368 (386)
Q Consensus 289 ~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i~p 368 (386)
+|.++|.+..+.++++|++|+||++||++++|+|+||||++|.+|+++||+++|.++++|||||+||++|||+|||+|+|
T Consensus 275 ~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRhG~Itp 354 (372)
T PLN02839 275 VGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRHGFIRP 354 (372)
T ss_pred eEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCCC
Confidence 99999999888889999999999999999999999999999999999999999998557999999999999999999999
Q ss_pred CCCCHHHHHhhccCCCCC
Q 016627 369 EYFGYLDLLQSLRSGDCS 386 (386)
Q Consensus 369 ~~~~y~ei~~~l~~~~~~ 386 (386)
|+|+|.||++|||+|+|+
T Consensus 355 e~p~y~ei~~rlh~g~~~ 372 (372)
T PLN02839 355 ESSGYLDLYRRLRNGDCS 372 (372)
T ss_pred CCCCHHHHHHHhhcCCCC
Confidence 999999999999999997
No 2
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.5e-59 Score=436.46 Aligned_cols=280 Identities=35% Similarity=0.600 Sum_probs=243.3
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEECCEEEeeecHHHHHHhhcCCCeEE---eecCCCCcccceEEeccCCCCHHHHHHH
Q 016627 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVVGYTHNRFASHLRKYDDVFI---YSENNGGRFGSHLKLNSKLKTADERTRV 169 (386)
Q Consensus 93 ~~~l~~i~~cn~~~~~~~~~~pf~v~g~~vG~i~p~~~~~L~~~~~~f~---~~~~~~~~~~~~v~l~~~l~~~~~rt~~ 169 (386)
-++++..+.|.+|---...-+||..+|..||||.|.+.+.|...+..+. ... ++.. +.+ ..+++.|+..
T Consensus 11 ~~~~elmd~~~~f~~f~~g~i~~~~~~~~iG~v~~~vl~~lek~~~~~f~~~~~~------~e~~-~~~-a~~f~~r~~~ 82 (306)
T KOG4313|consen 11 LNAEELLDECDSFNGFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVP------GEYI-EIN-ASTFEKRTDI 82 (306)
T ss_pred cCHHHHHHHHHHhcCccccceeceeccceeeeecHHHHHHHHhccchheeeeecc------ccce-ecc-cccchhhhhH
Confidence 4566677788887532333456667779999999999999998886432 221 2223 333 2577899999
Q ss_pred HHHHHHHHHHCC---CCCCcccceeeeccCCCCceeEEEEcccccccCeeeeEEEEEEEEEe--CCeEEEEEEecCCCCC
Q 016627 170 VGEVIKCLGEED---LIPGIRNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEK--DGQKFLWIGKRSQVKP 244 (386)
Q Consensus 170 l~~v~~~lr~~g---~l~gwr~El~dVyd~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~--dg~~~LwvqrRS~~K~ 244 (386)
+++++++|+.+. ...+||||+|.|| .+. +++..+|||+.++||+.+||||+|||+.. -+..+||++|||.+|+
T Consensus 83 ~~~~~~~~~~~~~l~~a~qwrne~Y~v~-~~k-kp~l~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKq 160 (306)
T KOG4313|consen 83 LAKVLEHWRHNNTFGIADQWRNELYTVY-KSK-KPVLAVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQ 160 (306)
T ss_pred HHHHHHHHHHhccccchhcccceeeEEE-ecC-cceeEeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccc
Confidence 999999998654 3468999999999 444 78999999999999999999999999975 4568999999999999
Q ss_pred CCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEE-EecCCceeeEEEEEEEEEcCCCCccCCC
Q 016627 245 TYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYM-DINGFSYKRDVLFCYDLKLPEDFVPKNQ 323 (386)
Q Consensus 245 t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~-~~~~~g~~~Ev~~vydl~l~~~~~p~~~ 323 (386)
||||||||++|||+..|.++.++|++|+.|||+|+.+++.++++.|.+||. +++-.++.+|..|+||+++|.+++|+|+
T Consensus 161 TWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~n 240 (306)
T KOG4313|consen 161 TWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNN 240 (306)
T ss_pred cCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCC
Confidence 999999999999999999999999999999999999888889999999998 5666788999999999999999999999
Q ss_pred CCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCCCCCCCCHHHHHhhccCC
Q 016627 324 DGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYICPEYFGYLDLLQSLRSG 383 (386)
Q Consensus 324 dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i~p~~~~y~ei~~~l~~~ 383 (386)
||||++|.++|+.|+.+.+.. .+|||||++|++||++|||+|+|.+|.|++.+.|+||.
T Consensus 241 DGEV~~F~Lltl~~~v~~l~~-k~FKpncAlV~iDflirHg~itp~~p~yl~~l~rihr~ 299 (306)
T KOG4313|consen 241 DGEVQAFELLTLKDCVERLFT-KDFKPNCALVVIDFLIRHGTITPQHPQYLQTLERIHRP 299 (306)
T ss_pred CCceeeEeeecHHHHHHHHHh-hccCCCcceEEEEEeecceecCCCChhHHHHHHhcccc
Confidence 999999999999999999997 69999999999999999999999779999999999985
No 3
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=100.00 E-value=4e-43 Score=319.27 Aligned_cols=178 Identities=52% Similarity=0.969 Sum_probs=161.0
Q ss_pred CcccceeeeccCCCCceeEEEEcccccccCeeeeEEEEEEEEEeC-CeEEEEEEecCCCCCCCCCCcccccccCCCCCCC
Q 016627 185 GIRNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKD-GQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIA 263 (386)
Q Consensus 185 gwr~El~dVyd~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~d-g~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs 263 (386)
|||||+|+|||++| ++++.++|+.++.+|+.|++||+++|+.+. ++.+||+||||++|.+|||+||+++|||+.+||+
T Consensus 1 ~~~~E~~~v~d~~~-~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~ 79 (180)
T cd03676 1 GWRNELYAVYGPFG-EPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG 79 (180)
T ss_pred CCcCcceeeECCCC-CEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC
Confidence 79999999999998 577999999999999999999999998642 2479999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEe-cCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 264 CGENIIKECEEEAGIPRSISNRARPVGAVSYMDI-NGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 264 ~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~-~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
+.+||+||++||+||+......+.++|.+.|.+. .+.++.++++|+|.+.++.+..+.++++||+++.|++++|+.+++
T Consensus 80 ~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 80 PEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 9999999999999998876544677888888876 555677899999999887666667778999999999999999999
Q ss_pred HcCCCcccChHHHHHHHHHHcC
Q 016627 343 RRTGFFKPNCSLVIIDFLFRHG 364 (386)
Q Consensus 343 ~~~~~Fkpn~~lVllDfliRhG 364 (386)
.+ ++|+|++.+++++||+|||
T Consensus 160 ~~-g~~~~~~~lv~~~~~~~~~ 180 (180)
T cd03676 160 KE-GEFKPNCALVTLDFLIRHG 180 (180)
T ss_pred Hc-CCCCcccHhHHHHHHhhcC
Confidence 98 7999999999999999998
No 4
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.92 E-value=1.3e-24 Score=195.37 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=127.0
Q ss_pred cceeeeccCCCCceeEEEEcccccccCee-eeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHH
Q 016627 188 NELYPVTSTFGSPIFFSLERAAAPYFGIK-AYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGE 266 (386)
Q Consensus 188 ~El~dVyd~~g~~~l~~ieRaa~~~~Gi~-~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~e 266 (386)
.|+++|||++| .+.+..+|+.++..|+. |.+||+.++. .+| +||++||+..|..|||.||..+||++++||++.+
T Consensus 1 ~e~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~v~v~i~~-~~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~e 76 (165)
T cd02885 1 EELVILVDEDD-NPIGTAEKLEAHLKGTLLHRAFSVFLFN-SKG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKD 76 (165)
T ss_pred CcEEEEECCCC-CCccccCHHHHhhcCCcceeEEEEEEEc-CCC--cEEEEeccCCCccCCCcccccccCCCCCCCCHHH
Confidence 48999999999 56679999999999999 9999997765 244 7999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCc-eeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcC
Q 016627 267 NIIKECEEEAGIPRSISNRARPVGAVSYMDINGFS-YKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRT 345 (386)
Q Consensus 267 aaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g-~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~ 345 (386)
||+||++||+||....... . .+.+.|......+ ...++.++|.+....+..+ +++|+++++|++++|+.+++.++
T Consensus 77 aa~REl~EEtGl~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~--~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 77 AAQRRLREELGITGDLLEL-V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIP--NPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HHHHHHHHHhCCCccchhh-c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCC--CccceeEEEEECHHHHHHHHHhC
Confidence 9999999999998765332 2 3555565433222 2345677888777555444 46899999999999999999984
Q ss_pred -CCcccChH
Q 016627 346 -GFFKPNCS 353 (386)
Q Consensus 346 -~~Fkpn~~ 353 (386)
+.|+|.-.
T Consensus 153 ~~~~~~~~~ 161 (165)
T cd02885 153 PEAFTPWFR 161 (165)
T ss_pred chhcCHHHH
Confidence 47777543
No 5
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.92 E-value=2.5e-24 Score=206.34 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=132.4
Q ss_pred ccceeeeccCCCCceeEEEEcccccc------cCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCC
Q 016627 187 RNELYPVTSTFGSPIFFSLERAAAPY------FGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPH 260 (386)
Q Consensus 187 r~El~dVyd~~g~~~l~~ieRaa~~~------~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~a 260 (386)
.+|.+.|||+++ ++++.+.|..++. .|+.|+++|+.++. .+| +|+|||||++|.+|||+||++||||+.+
T Consensus 21 ~~e~v~lvDe~d-~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ 96 (247)
T PLN02552 21 FEDECILVDEND-NVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLY 96 (247)
T ss_pred hcCeEEEEcCCC-CEEeeeEHhhhhccccccCCCceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCcccc
Confidence 569999999998 6888999988875 79999999999886 355 8999999999999999999999999998
Q ss_pred CCC-----------------HHHHHHHHHHhHhCCCCCcc--CCceeeeEEEEEEecC------Cc-eeeEEEEEEEEE-
Q 016627 261 GIA-----------------CGENIIKECEEEAGIPRSIS--NRARPVGAVSYMDING------FS-YKRDVLFCYDLK- 313 (386)
Q Consensus 261 GEs-----------------~~eaaiREl~EEaGL~~~~~--~~l~~~G~isy~~~~~------~g-~~~Ev~~vydl~- 313 (386)
||+ +.+||+||+.||+||....+ .++.+++.+.|..... .+ ...++.++|...
T Consensus 97 ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~ 176 (247)
T PLN02552 97 GQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRP 176 (247)
T ss_pred ccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEe
Confidence 754 57899999999999986542 3467788777765432 22 234666655432
Q ss_pred cC-CCCccCCCCCceeeEEEEcHHHHHHHHHc--CCCcccChHHHHHHHHHH
Q 016627 314 LP-EDFVPKNQDGEVESFQLIPVAHVANVIRR--TGFFKPNCSLVIIDFLFR 362 (386)
Q Consensus 314 l~-~~~~p~~~dgEVe~f~lvsleEv~~~l~~--~~~Fkpn~~lVllDfliR 362 (386)
.+ .++.| +++||++++|++++|+.++++. +..|+|.-.+++-+|+..
T Consensus 177 ~~~~~l~l--q~eEV~~~~wvs~~el~~~~~~~~~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 177 VRDVKVNP--NPDEVADVKYVNREELKEMMRKESGLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred cCCCcccC--CHHHhheEEEEeHHHHHHHHhhcCCcccCHHHHHHHHHHHHH
Confidence 22 24444 4789999999999999999873 246899888766666543
No 6
>PLN02791 Nudix hydrolase homolog
Probab=99.92 E-value=1e-24 Score=235.37 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=130.5
Q ss_pred ccceeeeccCCCCceeEEEEcccccccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHH
Q 016627 187 RNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGE 266 (386)
Q Consensus 187 r~El~dVyd~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~e 266 (386)
.+|++||||++|++++..+.|+.++..|+.|++||++++...+| +|++||||..|.+|||+||++||||+.+||++.+
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~e 79 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL 79 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHH
Confidence 47999999999976666689999999999999999999974344 8999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCCCccCCceeeeEEEEEEe--cCCceeeEEEEEEEEEcCC-----CCccCCCCCceeeEEEEcHHHHH
Q 016627 267 NIIKECEEEAGIPRSISNRARPVGAVSYMDI--NGFSYKRDVLFCYDLKLPE-----DFVPKNQDGEVESFQLIPVAHVA 339 (386)
Q Consensus 267 aaiREl~EEaGL~~~~~~~l~~~G~isy~~~--~~~g~~~Ev~~vydl~l~~-----~~~p~~~dgEVe~f~lvsleEv~ 339 (386)
||+||++||+||.... ..+.++|.+.+... .+....+|+.++|.+.... +++| +++||++++|++++|+.
T Consensus 80 AA~REL~EELGI~l~~-~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~l--q~eEV~~v~wvsl~El~ 156 (770)
T PLN02791 80 SAQRELEEELGIILPK-DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTL--QESEVSAVKYMSIEEYK 156 (770)
T ss_pred HHHHHHHHHhCCCCCh-hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCC--ChhhhheeEEEcHHHHH
Confidence 9999999999998643 33566666544322 2223456888888765311 3444 47999999999999999
Q ss_pred HHHHc-CCCcccCh
Q 016627 340 NVIRR-TGFFKPNC 352 (386)
Q Consensus 340 ~~l~~-~~~Fkpn~ 352 (386)
+++.. .+.|+|..
T Consensus 157 ~~l~~~~~~fvP~~ 170 (770)
T PLN02791 157 SALAKEDPAYVPYD 170 (770)
T ss_pred HHHhcCCCceeecc
Confidence 99986 45888864
No 7
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.92 E-value=3.2e-24 Score=196.40 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=134.1
Q ss_pred ccceeeeccCCCCceeEEEEcccccc-cCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHH
Q 016627 187 RNELYPVTSTFGSPIFFSLERAAAPY-FGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACG 265 (386)
Q Consensus 187 r~El~dVyd~~g~~~l~~ieRaa~~~-~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~ 265 (386)
.+|+++|||++| .+++.++|..++. .|..|.+|++.++. .+| +||++||+..|..+||+||+++||++++||++.
T Consensus 4 ~~E~~~~vd~~~-~~~g~~~r~~~~~~~~~~h~av~v~i~~-~~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~ 79 (184)
T PRK03759 4 ETELVVLLDEQG-VPTGTAEKAAAHTADTPLHLAFSCYLFD-ADG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLE 79 (184)
T ss_pred CceeEEEECCCC-CCcccccHHHHHhcCCCeeeEEEEEEEc-CCC--eEEEEEccCCCCCCCCcccccccCCCCCCCCHH
Confidence 479999999999 5778999999995 79999999976664 244 899999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCccCCceeeeEEEEEEecC-CceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 266 ENIIKECEEEAGIPRSISNRARPVGAVSYMDING-FSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 266 eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~-~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
+||+||+.||+||...... ...+.+.|..... ..+..++.++|.+....... ++++|+.+++|++++|+.+++.+
T Consensus 80 ~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~--~~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 80 DAVIRRCREELGVEITDLE--LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQ--PNPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred HHHHHHHHHHhCCCccccc--cccceEEEEEecCCCceeeEEEEEEEEEECCCCC--CChhHeeeEEEECHHHHHHHHHh
Confidence 9999999999999875322 2334455543222 22345677888888764433 34689999999999999999998
Q ss_pred C-CCcccChHHHHHHHHHHcCCC
Q 016627 345 T-GFFKPNCSLVIIDFLFRHGYI 366 (386)
Q Consensus 345 ~-~~Fkpn~~lVllDfliRhG~i 366 (386)
+ ..|+|+..+.+.....|.-++
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~ 178 (184)
T PRK03759 156 TPWAFSPWMVLQAANLEARELLL 178 (184)
T ss_pred CCcccChHHHHHHHHhcccccCc
Confidence 3 267887777666555555444
No 8
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.92 E-value=5.2e-24 Score=190.62 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=121.2
Q ss_pred eeeccCCCCceeEEEEcccccc-cCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q 016627 191 YPVTSTFGSPIFFSLERAAAPY-FGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENII 269 (386)
Q Consensus 191 ~dVyd~~g~~~l~~ieRaa~~~-~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaai 269 (386)
++|||++| .+++.+.|..++. .|+.|.+|++.++. .+| +||++||+.+|..+||+||.++||++.+|| .+||+
T Consensus 1 ~~~~d~~~-~~~g~~~r~~~~~~~g~~h~~v~v~v~~-~~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~ 74 (158)
T TIGR02150 1 VILVDEND-NPIGTASKAEVHLQETPLHRAFSVFLFN-EEG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAI 74 (158)
T ss_pred CEEECCCC-CEeeeeeHHHhhhcCCCeEEEEEEEEEc-CCC--eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHH
Confidence 36899999 5778899999985 69999999987664 244 899999999999999999999999999999 49999
Q ss_pred HHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCC-Cc
Q 016627 270 KECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTG-FF 348 (386)
Q Consensus 270 REl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~-~F 348 (386)
||++||+||.....+ +..++.+.|....+.+. .++.++|.+..+.+..+ +++||++++|++++|+.++++.+. .+
T Consensus 75 REl~EE~Gl~~~~~~-l~~~~~~~~~~~~~~g~-~~~~~~f~~~~~~~~~~--~~~Ev~~~~W~~~~el~~~~~~~~~~~ 150 (158)
T TIGR02150 75 RRLREELGIPADDVP-LTVLPRFSYRARDAWGE-HELCPVFFARAPVPLNP--NPEEVAEYRWVSLEELKEILKAPWAGF 150 (158)
T ss_pred HHHHHHHCCCccccc-eEEcceEEEEEecCCCc-EEEEEEEEEecCCcccC--ChhHeeeEEEeCHHHHHHHHhcCcccc
Confidence 999999999887543 44555566654433332 46778888887654444 478999999999999999999843 68
Q ss_pred ccC
Q 016627 349 KPN 351 (386)
Q Consensus 349 kpn 351 (386)
+|+
T Consensus 151 ~p~ 153 (158)
T TIGR02150 151 SPW 153 (158)
T ss_pred CHh
Confidence 873
No 9
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.90 E-value=6.3e-23 Score=187.66 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=127.1
Q ss_pred ccceeeeccCCCCceeEEEEcccccccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHH
Q 016627 187 RNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGE 266 (386)
Q Consensus 187 r~El~dVyd~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~e 266 (386)
-.|+++|||.+| .+++.++|..++..|+.|.++++.++. .+| +||++||+..|..+||+||.++||++.+||++.+
T Consensus 8 ~~e~~~~~d~~~-~~~g~~~~~~~~~~~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~e 83 (180)
T PRK15393 8 STEWVDIVNENN-EVIAQASREQMRAQCLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLE 83 (180)
T ss_pred CceEEEEECCCC-CEeeEEEHHHHhhCCCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHH
Confidence 468999999999 688889999999999999999887654 234 8999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCC
Q 016627 267 NIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTG 346 (386)
Q Consensus 267 aaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~ 346 (386)
||+||+.||+||.... +...|.+.|.. .. . ..+..+|.+.......+. ++|+.+++|++++|+.+++.
T Consensus 84 AA~REL~EEtGl~~~~---~~~~~~~~~~~--~~-~-~~~~~~f~~~~~~~~~~~--~~E~~~~~W~~~~el~~~~~--- 151 (180)
T PRK15393 84 SARREAEEELGIAGVP---FAEHGQFYFED--EN-C-RVWGALFSCVSHGPFALQ--EEEVSEVCWMTPEEITARCD--- 151 (180)
T ss_pred HHHHHHHHHHCCCCcc---ceeceeEEecC--CC-c-eEEEEEEEEEeCCCCCCC--hHHeeEEEECCHHHHhhhhh---
Confidence 9999999999997543 33455543322 11 1 223344555554444443 68999999999999999864
Q ss_pred CcccChHHHHHHHHHHc
Q 016627 347 FFKPNCSLVIIDFLFRH 363 (386)
Q Consensus 347 ~Fkpn~~lVllDfliRh 363 (386)
.|+|.....+.+++.++
T Consensus 152 ~~~~~~~~~l~~~l~~~ 168 (180)
T PRK15393 152 EFTPDSLKALALWLTRN 168 (180)
T ss_pred hcCccHHHHHHHHHHhh
Confidence 58888887788888776
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=1.3e-22 Score=177.76 Aligned_cols=135 Identities=26% Similarity=0.278 Sum_probs=104.5
Q ss_pred eeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEE
Q 016627 216 KAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYM 295 (386)
Q Consensus 216 ~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~ 295 (386)
+|++||+.++...+|+.+||++||+..|..|||+||+++||+++.||++.+||+||++||+||..+. ..+..+|.+.+.
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~-~~l~~~~~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSA-DDLIPLGTFKIE 79 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCCh-HHeEEeeEEEEe
Confidence 4788999999865556799999999999999999999899999999999999999999999998754 346677777665
Q ss_pred Ee-cCCceeeEEEEEEEEEcCCC-CccCCCCCceeeEEEEcHHHHHHHHHcC-CCcccC
Q 016627 296 DI-NGFSYKRDVLFCYDLKLPED-FVPKNQDGEVESFQLIPVAHVANVIRRT-GFFKPN 351 (386)
Q Consensus 296 ~~-~~~g~~~Ev~~vydl~l~~~-~~p~~~dgEVe~f~lvsleEv~~~l~~~-~~Fkpn 351 (386)
.. .+.....++.++|.+.+... -.+.++++|+.+++|++++|+.+++.+. ..|+|.
T Consensus 80 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 138 (144)
T cd04692 80 YDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEEDHKYQYY 138 (144)
T ss_pred ccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcCCCCCCcc
Confidence 43 22223345566777766431 1233457899999999999999999872 355553
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=9.8e-20 Score=156.15 Aligned_cols=123 Identities=21% Similarity=0.238 Sum_probs=94.3
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~ 298 (386)
++++.++. .+| +|+++||+.+|..+||+|++++||++++||++.+||+||+.||+||+.. .+..++.+.|..
T Consensus 2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~---~l~~~~~~~~~~-- 73 (126)
T cd04697 2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV---QLTPLGLFYYDT-- 73 (126)
T ss_pred eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc---ccEEeeEEEecC--
Confidence 46666554 245 8999999999999999999889999999999999999999999999876 345666655432
Q ss_pred CCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHH
Q 016627 299 GFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSL 354 (386)
Q Consensus 299 ~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~l 354 (386)
... ....++|.+....+..+ +++|+.+++|++++|+.+++.. +.|+|++..
T Consensus 74 ~~~--~~~~~~f~~~~~~~~~~--~~~E~~~~~w~~~~el~~~~~~-~~~~~~~~~ 124 (126)
T cd04697 74 DGN--RVWGKVFSCVYDGPLKL--QEEEVEEITWLSINEILQFKEG-ENITPDSLS 124 (126)
T ss_pred CCc--eEEEEEEEEEECCCCCC--CHhHhhheEEcCHHHHHHHhhc-CcccCCccc
Confidence 111 23344565555444443 4689999999999999999987 789998754
No 12
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.82 E-value=3.2e-20 Score=167.37 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=134.3
Q ss_pred cceeeeccCCCCceeEEEEcccccccCee--eeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHH
Q 016627 188 NELYPVTSTFGSPIFFSLERAAAPYFGIK--AYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACG 265 (386)
Q Consensus 188 ~El~dVyd~~g~~~l~~ieRaa~~~~Gi~--~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~ 265 (386)
+|..=+.|.+| .+.++.++.+++..--. |++.-+..|.. +| +|+|+||+.+|.+|||.|+|+|+||..+||+..
T Consensus 3 ~e~vill~~~d-~~~G~~~k~~~Ht~d~~~LHrAFS~~lFne-~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~ 78 (185)
T COG1443 3 TEDVILLNDDD-VPTGTAEKLAAHTGDTPRLHRAFSSFLFNE-RG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNE 78 (185)
T ss_pred ceeEEEECCCC-CccccchhhhhhccccHHHHhhhheeEECC-CC--ceeeehhhhhcccCcccccccccCCCcCCCchH
Confidence 56677788888 67899999999875443 77777766653 55 899999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCc-eeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 266 ENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFS-YKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 266 eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g-~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
+|++|-+.+|+||..+.......+-.+.|...+..+ ...|++++|...+.. .++++++||.+++|++.+++.+++..
T Consensus 79 ~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~--~~~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 79 DAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS--ALDPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred HHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC--CCCCChHHhhheeccCHHHHHHhhcC
Confidence 999999999999998854455666678887665443 568999999988866 44555799999999999999999988
Q ss_pred C-CCcccChHHHHHHH
Q 016627 345 T-GFFKPNCSLVIIDF 359 (386)
Q Consensus 345 ~-~~Fkpn~~lVllDf 359 (386)
+ -.|+|++...+-.+
T Consensus 157 ~~~~fsPW~~~~~~~~ 172 (185)
T COG1443 157 TPWAFSPWFVIQAEND 172 (185)
T ss_pred CceeeChHHHHHhcch
Confidence 3 25678877665444
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.4e-19 Score=149.82 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=91.0
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~ 298 (386)
+|++.++. .+| +||++||+..|..+||+|+..+||++++||++ +||+||++||+||.+... .+..++.+.+ ..
T Consensus 2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~-~~~~~~~~~~--~~ 74 (127)
T cd04693 2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS-ELRPLFRYFF--EA 74 (127)
T ss_pred eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh-hcEEEEEEEe--ec
Confidence 35555443 244 89999999999999999998889999999999 999999999999987642 3444444333 22
Q ss_pred CCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHH
Q 016627 299 GFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLV 355 (386)
Q Consensus 299 ~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lV 355 (386)
. +.. . .++|.+.+.. ..+.++++|+.+++|++++|+.+++.+ +.|+|+.+++
T Consensus 75 ~-~~~-~-~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~-~~~~~~~~~~ 126 (127)
T cd04693 75 E-GFD-D-YYLFYADVEI-GKLILQKEEVDEVKFVSKDEIDGLIGH-GEFTPYFESE 126 (127)
T ss_pred C-CeE-E-EEEEEecCcc-cccccCHHHhhhEEEeCHHHHHHHHhc-CCcccccccc
Confidence 1 222 2 2334343322 223334689999999999999999998 7899988764
No 14
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.68 E-value=1e-15 Score=131.94 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=97.1
Q ss_pred eEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEe
Q 016627 218 YGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDI 297 (386)
Q Consensus 218 ~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~ 297 (386)
.+|.+.++. .++ ++++.||...+ ..++.|+ ++||+++.||++.+||+||++||+||.... +..++.+.+.
T Consensus 3 ~~v~v~~~~-~~~--~iLl~~~~~~~-~~~~~w~-~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~---~~~~~~~~~~-- 72 (137)
T cd03424 3 DAVAVLPYD-DDG--KVVLVRQYRPP-VGGWLLE-LPAGLIDPGEDPEEAARRELEEETGYEAGD---LEKLGSFYPS-- 72 (137)
T ss_pred CEEEEEEEc-CCC--eEEEEEeeecC-CCCEEEE-eCCccCCCCCCHHHHHHHHHHHHHCCCccc---eEEEeeEecC--
Confidence 456665554 234 67777664442 4688997 789999999999999999999999998763 3444544321
Q ss_pred cCCceeeEEEEEEEEEcCCCCc-cCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcC
Q 016627 298 NGFSYKRDVLFCYDLKLPEDFV-PKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHG 364 (386)
Q Consensus 298 ~~~g~~~Ev~~vydl~l~~~~~-p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG 364 (386)
. +.....+++|.+....... +..+++|+.+++|++++|+.+++.+ ++++++..++++..+.+++
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~-~~~~~~~~~~~~~~~~~~~ 137 (137)
T cd03424 73 P--GFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD-GEIIDDATLIALLLWLALN 137 (137)
T ss_pred C--cccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc-CCCcccHHHHHHHHHHHcC
Confidence 1 1122345667777654322 4445789999999999999999998 7999999998887777753
No 15
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.65 E-value=9e-16 Score=137.03 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=83.9
Q ss_pred eeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCC-CCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEE
Q 016627 217 AYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYM 295 (386)
Q Consensus 217 ~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aG-Es~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~ 295 (386)
+.+|++..+.. +++.+++++||+..|..+||+|+ ++||+++.| |++.+||+||++||+||.... +..++.+...
T Consensus 2 ~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~-lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~---~~~l~~~~~~ 76 (157)
T cd03426 2 RAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVA-FPGGKVDPGDEDPVATALREAEEEIGLPPDS---VEVLGRLPPY 76 (157)
T ss_pred ceEEEEEEEeC-CCceEEEEEEcccccccCCCcEE-CCCCCcCCCcCCHHHHHHHHHHHHhCCCccc---eEEEEECCCc
Confidence 34678877753 44469999999999989999997 789999999 999999999999999998764 3445543321
Q ss_pred EecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 296 DINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 296 ~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
.... + ..+++|.+.+..+..+.++++|+.+++|++++|+.+.
T Consensus 77 ~~~~-~---~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 77 YTRS-G---FVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred cccC-C---CEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 1111 1 2234455554433233444679999999999998874
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.5e-15 Score=127.69 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=76.1
Q ss_pred EEEEEecCCC-CCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 016627 233 FLWIGKRSQV-KPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYD 311 (386)
Q Consensus 233 ~LwvqrRS~~-K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vyd 311 (386)
+++++||+.. |..|||+|+ ++||+++.||++.+||+||++||+|+..+... +... ..|... ...+..++|.
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~-~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~--~~~~~~----~~~~~~~~f~ 84 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWD-LPGGHREGGETPLECVLRELLEEIGLTLPESR-IPWF--RVYPSA----SPPGTEHVFV 84 (122)
T ss_pred EEEEEEccCCCCCCCCCcEe-CCCccccCCCCHHHHHHHHHHHHhCCcccccc-ccee--EecccC----CCCceEEEEE
Confidence 8999999988 889999997 78999999999999999999999999876421 2221 222221 1235567777
Q ss_pred EEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 312 LKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 312 l~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
+.+........+++|+++++|++++|+....
T Consensus 85 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 85 VPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEecCCCccccCchhheeecccHHHHhhcc
Confidence 7765432223347899999999999987653
No 17
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=3.1e-15 Score=127.88 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=82.2
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEE-EEEEe
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV-SYMDI 297 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~i-sy~~~ 297 (386)
.|.+..+... ++.++++.||+.. +||+|+ ++||+++.||++.+||+||++||+||.......+...+.+ .|...
T Consensus 3 ~~~v~~~~~~-~~~~vLL~~r~~~---~~~~w~-~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04664 3 SVLVVPYRLT-GEGRVLLLRRSDK---YAGFWQ-SVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFT 77 (129)
T ss_pred EEEEEEEEeC-CCCEEEEEEeCCC---CCCccc-ccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccC
Confidence 4566666421 2348999999875 999998 7899999999999999999999999987543222222211 12222
Q ss_pred cCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 298 NGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 298 ~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
. .+ .....++|.+.+.... +...++|+.+++|++++|+.+++..
T Consensus 78 ~-~~-~~~~~~~f~~~~~~~~-~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 78 D-NG-RVWTEHPFAFHLPSDA-VVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred C-Cc-eEEEEeEEEEEcCCCC-cccCCccccccEecCHHHHHHHHcC
Confidence 1 11 2345677888876543 2234679999999999999988754
No 18
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.61 E-value=7.4e-15 Score=127.91 Aligned_cols=114 Identities=17% Similarity=0.250 Sum_probs=75.9
Q ss_pred eEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCce---eeeEEEE
Q 016627 218 YGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRAR---PVGAVSY 294 (386)
Q Consensus 218 ~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~---~~G~isy 294 (386)
+.|+..+.. ++| +++++||+..|..+||+|+ ++||++++||++.+||+||++||+||...... +. +.+.+.+
T Consensus 4 r~~~~~ii~-~~~--~vLl~~R~~~~~~~~g~W~-lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~ 78 (141)
T PRK15472 4 RTIVCPLIQ-NDG--AYLLCKMADDRGVFPGQWA-LSGGGVEPGERIEEALRREIREELGEQLLLTE-ITPWTFRDDIRT 78 (141)
T ss_pred eeEEEEEEe-cCC--EEEEEEecccCCCCCCcee-CCcccCCCCCCHHHHHHHHHHHHHCCceeeee-ecccccccccee
Confidence 356665554 355 8999999998999999997 66999999999999999999999999764321 11 1111111
Q ss_pred -EEecCCceeeEE---EEEEEEEcCC-CCccCCCCCceeeEEEEcHHHHHHH
Q 016627 295 -MDINGFSYKRDV---LFCYDLKLPE-DFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 295 -~~~~~~g~~~Ev---~~vydl~l~~-~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
.+..+ ...++ .++|.+.... ++.+ ++|+.+++|++++|+.++
T Consensus 79 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 79 KTYADG--RKEEIYMIYLIFDCVSANRDVKI---NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEecCC--CceeEEEEEEEEEeecCCCcccC---ChhhheEEEccHHHhccc
Confidence 11111 11122 2345554432 2222 379999999999998765
No 19
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.9e-15 Score=139.00 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=132.5
Q ss_pred ceeeeccCCCCceeEEEEccccc-----ccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCC--C-
Q 016627 189 ELYPVTSTFGSPIFFSLERAAAP-----YFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLP--H- 260 (386)
Q Consensus 189 El~dVyd~~g~~~l~~ieRaa~~-----~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~--a- 260 (386)
|.+-++|.+. .+++.-....++ .-|+.|++.|+..|.. ++ ++++||||..|-+|||.|.|++++|.. +
T Consensus 20 e~ci~VDenD-~~IG~~tk~~cHl~eni~kglLHRaFSVFlFns-~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~ 95 (225)
T KOG0142|consen 20 ENCILVDEND-NVIGAGTKKNCHLMENIEKGLLHRAFSVFLFNS-KN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPG 95 (225)
T ss_pred hheEeecccc-ccccchhhhhhhcchhHHhhhhhheeeEEEecC-cc--hHHHhhhccccccccchhhhhhhcCcCCChh
Confidence 3455677766 344444444555 6788999999988762 44 799999999999999999999999986 2
Q ss_pred ------CCCHHHHHHHHHHhHhCCCCCccC--CceeeeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEE
Q 016627 261 ------GIACGENIIKECEEEAGIPRSISN--RARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQL 332 (386)
Q Consensus 261 ------GEs~~eaaiREl~EEaGL~~~~~~--~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~l 332 (386)
+..+..||+|-+.-|+||+.+.+. .+.+++.+.|...+.+.| .|..-.|-+-+-.++.++|+++||.++++
T Consensus 96 el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~w-GEhEiDYiL~~~~~~~~nPnpnEv~e~ry 174 (225)
T KOG0142|consen 96 ELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIW-GEHEIDYILFLVKDVTLNPNPNEVSEIRY 174 (225)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCc-ccceeeEEEEEeccCCCCCChhhhhHhhe
Confidence 346789999999999999988775 578999999987765433 24444454555557778888899999999
Q ss_pred EcHHHHHHHHHcC-CCcccChHHHHHHHHHH
Q 016627 333 IPVAHVANVIRRT-GFFKPNCSLVIIDFLFR 362 (386)
Q Consensus 333 vsleEv~~~l~~~-~~Fkpn~~lVllDfliR 362 (386)
++.+|+++++++. -.|+|+..++.-.|+++
T Consensus 175 vs~eelkel~~~~~~~~TPWfkli~~~~l~~ 205 (225)
T KOG0142|consen 175 VSREELKELVAKASAGFTPWFKLISENFLFK 205 (225)
T ss_pred ecHHHHHHHHhccccCCChHHHHHHHHHHHH
Confidence 9999999999982 36899999988888877
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.59 E-value=9.2e-15 Score=123.47 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=89.4
Q ss_pred eeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEE
Q 016627 217 AYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMD 296 (386)
Q Consensus 217 ~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~ 296 (386)
+.+|++.++. .+| ++|+.||+..+..+||+|. ++||+++.||++.+||+||+.||+|+.... ....+...|..
T Consensus 2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~-~pgG~i~~~E~~~~aa~REl~EE~g~~~~~---~~~~~~~~~~~ 74 (134)
T PF00293_consen 2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWE-LPGGGIEPGESPEEAARRELKEETGLDVSP---LELLGLFSYPS 74 (134)
T ss_dssp EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEE-SSEEEECTTSHHHHHHHHHHHHHHSEEEEE---EEEEEEEEEEE
T ss_pred CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEe-cceeeEEcCCchhhhHHhhhhhcccceecc---cccceeeeecc
Confidence 4556666554 244 8999999998888999995 789999999999999999999999998743 34555555655
Q ss_pred ecCCceeeEEEEEEEEEcCCCC-ccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 297 INGFSYKRDVLFCYDLKLPEDF-VPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 297 ~~~~g~~~Ev~~vydl~l~~~~-~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
..... .....+.|.+.++.+. .+.++.+|+.+++|++++|+.+++..
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 75 PSGDP-EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp TTTES-SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHT
T ss_pred cCCCc-ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhC
Confidence 43322 1244556666665432 44444569999999999999999876
No 21
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.58 E-value=3.6e-14 Score=119.83 Aligned_cols=110 Identities=20% Similarity=0.307 Sum_probs=81.2
Q ss_pred EEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCc--ee
Q 016627 226 VEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFS--YK 303 (386)
Q Consensus 226 v~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g--~~ 303 (386)
+.+++ ++++.||+..+ ++|+|+ ++||+++.||++.+||+||++||+|+.... ...+|...+.+..+.. ..
T Consensus 7 i~~~~--~vLl~~~~~~~--~~~~w~-lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 7 IPRDG--KLLLIQKNGGP--YEGRWD-LPGGGIEPGESPEEALHREVLEETGLTVEI---GRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred EEeCC--EEEEEEccCCC--CCCeEE-CCCcccCCCCCHHHHHHHHHHHHhCcEeec---ceeeeEEEEEEECCCCCeec
Confidence 33454 79999998764 899996 789999999999999999999999998754 3566666655443322 12
Q ss_pred eEEEEEEEEEcCCCCc-cCCCCCceeeEEEEcHHHHHHHHH
Q 016627 304 RDVLFCYDLKLPEDFV-PKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 304 ~Ev~~vydl~l~~~~~-p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
..+.++|.+....... ....++|+.++.|++++++.+...
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 119 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLL 119 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCC
Confidence 4567888888765432 133467899999999999876543
No 22
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.57 E-value=3.8e-14 Score=124.43 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=83.5
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeee---EEEEE
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG---AVSYM 295 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G---~isy~ 295 (386)
+|.+.++. .+| ++++.||+. .||.|+ ++||+++.||++.+||+||++|||||.... .....++ ...|.
T Consensus 9 ~v~~vi~~-~~~--~vLl~~r~~----~~~~W~-lPgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~~~~~~~~~~~~ 79 (148)
T PRK09438 9 SVLVVIYT-PDL--GVLMLQRAD----DPDFWQ-SVTGSLEEGETPAQTAIREVKEETGIDVLA-EQLTLIDCQRSIEYE 79 (148)
T ss_pred EEEEEEEe-CCC--eEEEEEecC----CCCcEe-CCcccCCCCCCHHHHHHHHHHHHhCcCccc-cceeecccccccccc
Confidence 34444443 244 688888853 379997 789999999999999999999999998732 1122211 11221
Q ss_pred E------ecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHH
Q 016627 296 D------INGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFR 362 (386)
Q Consensus 296 ~------~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliR 362 (386)
. ....+......++|.+.++.+..+. .+|+.++.|++++|+.+++.. |+-.-++.+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~E~~~~~W~~~~e~~~~~~~-----~~~~~~l~~~~~~ 145 (148)
T PRK09438 80 IFPHWRHRYAPGVTRNTEHWFCLALPHERPVV--LTEHLAYQWLDAREAAALTKS-----WSNAEAIEQLVIR 145 (148)
T ss_pred cchhhhhccccccCCceeEEEEEecCCCCccc--cCcccceeeCCHHHHHHHhcC-----hhHHHHHHHHHHH
Confidence 1 0011223456778888876544443 459999999999999997643 5545555556555
No 23
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=7e-14 Score=117.73 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=75.9
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceee
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKR 304 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~ 304 (386)
++.++| +|++.||+..+ .+||+|+ ++||+++.||++.+||+||++||+||.+.. ..+..++.+.+.... . ..
T Consensus 6 vi~~~~--~vLL~~r~~~~-~~~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~v~~-~~~~~~~~~~~~~~~--~-~~ 77 (120)
T cd04683 6 LLRRDD--EVLLQRRANTG-YMDGQWA-LPAGHLEKGEDAVTAAVREAREEIGVTLDP-EDLRLAHTMHRRTED--I-ES 77 (120)
T ss_pred EEEECC--EEEEEEccCCC-CCCCeEe-CCccccCCCCCHHHHHHHHHHHHHCCccCh-hheEEEEEEEecCCC--C-ce
Confidence 344465 79999998654 4699997 779999999999999999999999998753 234556654433221 1 12
Q ss_pred EEEEEEEEEcCCCCccCC-CCCceeeEEEEcHHHHHHHHH
Q 016627 305 DVLFCYDLKLPEDFVPKN-QDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 305 Ev~~vydl~l~~~~~p~~-~dgEVe~f~lvsleEv~~~l~ 343 (386)
.+.+.|.+..... .+.+ +++|+.+++|++++++.+.+.
T Consensus 78 ~~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 78 RIGLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence 3344455554222 2222 357899999999999877654
No 24
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.55 E-value=1.9e-13 Score=115.89 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=79.1
Q ss_pred EEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCc
Q 016627 222 MNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFS 301 (386)
Q Consensus 222 lngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g 301 (386)
..++...+++.+|++.||... |.|+ ++||+++.||++.+||+||++||+|+..... ..++.+.|......+
T Consensus 6 ~ii~~~~~~~~~vLl~~~~~~-----~~w~-~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~~ 76 (131)
T cd03673 6 GVVFRGSDGGIEVLLIHRPRG-----DDWS-LPKGKLEPGETPPEAAVREVEEETGIRAEVG---DPLGTIRYWFSSSGK 76 (131)
T ss_pred EEEEEccCCCeEEEEEEcCCC-----Cccc-CCCCccCCCCCHHHHHHHHHhhhhCCceEec---ceEEEEEEeccCCCC
Confidence 333433344468999999644 7895 8899999999999999999999999987653 456666665432211
Q ss_pred eeeEEEEEEEEEcCC-CCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 302 YKRDVLFCYDLKLPE-DFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 302 ~~~Ev~~vydl~l~~-~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
.....++.|.+.... ...+. .++|+.+++|+|++|+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 77 RVHKTVHWWLMRALGGEFTPQ-PDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred CcceEEEEEEEEEcCCCcccC-CCCcEEEEEEcCHHHHHHHcC
Confidence 223455667666643 23321 368999999999999988764
No 25
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.54 E-value=3.3e-13 Score=115.95 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=86.4
Q ss_pred EEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCcee
Q 016627 224 GYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYK 303 (386)
Q Consensus 224 gyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~ 303 (386)
+++..++ ++++.||... .+++| .++||+++.||++.+||+||++||+|+.... ....+...+.......
T Consensus 5 ~ii~~~~--~vLlv~r~~~---~~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~---~~~~~~~~~~~~~~~~-- 73 (134)
T cd03675 5 AVVERDG--RFLLVEEETD---GGLVF-NQPAGHLEPGESLIEAAVRETLEETGWHVEP---TALLGIYQWTAPDSDT-- 73 (134)
T ss_pred EEEEECC--EEEEEEEccC---CCceE-ECCCccCCCCCCHHHHHHHHHHHHHCccccc---ceEEEEEEeecCCCCe--
Confidence 3444465 6888888543 56788 5889999999999999999999999998754 2344554443322111
Q ss_pred eEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcC
Q 016627 304 RDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHG 364 (386)
Q Consensus 304 ~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG 364 (386)
..+.++|.+.+..+....+.++|+.++.|++++|+.++... ...|...-++-+++...+
T Consensus 74 ~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--~~~~~~~~~i~~~l~~~~ 132 (134)
T cd03675 74 TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--LRSPLVLRCIEDYLAGRR 132 (134)
T ss_pred eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--hcCchHHHHHHHHHhcCc
Confidence 23455677777544322234678999999999999988752 234555556666665443
No 26
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=1.5e-13 Score=121.73 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=79.2
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccC-CceeeeEEEEEEec--CCc---eeeE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISN-RARPVGAVSYMDIN--GFS---YKRD 305 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~-~l~~~G~isy~~~~--~~g---~~~E 305 (386)
.+|+++||+..|..|||+|+ ++||++.+||++.+||+||+.||+||...... ..+.+|...+.+.. ..+ ....
T Consensus 13 ~~vLl~rr~~~~~~~~g~w~-~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (143)
T cd04694 13 QKLLLTRRASSLRIFPNVWV-PPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHI 91 (143)
T ss_pred CEEEEEEECCCCCCCCCeEE-CcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeE
Confidence 38999999999889999997 67999999999999999999999999876421 12455544332211 111 1234
Q ss_pred EEEEEEEEcCC----CCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 306 VLFCYDLKLPE----DFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 306 v~~vydl~l~~----~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
..|+|.+.... ...++++++||++++|++++++++++..
T Consensus 92 ~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~ 134 (143)
T cd04694 92 VVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSA 134 (143)
T ss_pred EEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHh
Confidence 44544332221 1233445689999999999999999876
No 27
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=2.7e-13 Score=113.75 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=77.3
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCC--ce
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGF--SY 302 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~--g~ 302 (386)
++.+++ ++++.||+. ..++|.|+ ++||+++.||++.+||+||++||+|+.... ...++.+.+....+. ..
T Consensus 6 ii~~~~--~vLl~~r~~--~~~~~~w~-~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 6 VVFRGG--RVLLVRRAN--PPDAGLWS-FPGGKVELGETLEQAALRELLEETGLEAEV---GRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred EEEECC--EEEEEEEcC--CCCCCeEE-CCCcccCCCCCHHHHHHHHHHHhhCcEeee---ceeEEEEEEeeccCCCccc
Confidence 333455 788888874 35899996 889999999999999999999999998754 345566655543221 11
Q ss_pred eeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 303 KRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 303 ~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
...+++.|.+....+-. . .++|+.+++|++++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~-~-~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 78 FHYVLIDFLCRYLGGEP-V-AGDDALDARWVPLDELAALS 115 (122)
T ss_pred eEEEEEEEEEEeCCCcc-c-CCcccceeEEECHHHHhhCc
Confidence 23456667777643322 2 25789999999999998753
No 28
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.7e-13 Score=116.15 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=76.3
Q ss_pred EEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeE
Q 016627 226 VEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRD 305 (386)
Q Consensus 226 v~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~E 305 (386)
+.+++ ++++.||+.++..+||+|+ ++||+++.||++.+||+||++||+|+.... ...++.+.+ ..+ ...
T Consensus 7 i~~~~--~vLL~rR~~~~~~~~g~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~l~~~~~--~~~---~~~ 75 (117)
T cd04691 7 LFSDD--KVLLERRSLTKNADPGKLN-IPGGHIEAGESQEEALLREVQEELGVDPLS---YTYLCSLYH--PTS---ELQ 75 (117)
T ss_pred EEECC--EEEEEEeCCCCCCCCCeEE-CcceeecCCCCHHHHHHHHHHHHHCCCccc---ceEEEEEec--cCC---CeE
Confidence 33454 8999999988878999994 899999999999999999999999998532 334443322 111 124
Q ss_pred EEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 306 VLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 306 v~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
.++.|.+..... .+. .+|+.+++|++++++......
T Consensus 76 ~~~~~~~~~~~~-~~~--~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 76 LLHYYVVTFWQG-EIP--AQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred EEEEEEEEEecC-CCC--cccccccEEcCHHHcchhhhh
Confidence 456666665432 233 379999999999999876654
No 29
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=2.6e-13 Score=115.44 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=73.5
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||+.. ..+|.|+ ++||+++.||++.+||+||++||+|+..... .+++...+....... ..+..+|.+
T Consensus 15 ~vLL~~r~~~--~~~~~w~-lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~--~~~~~~f~~ 86 (125)
T cd04679 15 KLLLVKRLRA--PEAGHWG-IPGGKVDWMEAVEDAVVREIEEETGLSIHST---RLLCVVDHIIEEPPQ--HWVAPVYLA 86 (125)
T ss_pred EEEEEEecCC--CCCCeEe-CCeeeccCCCCHHHHHHHHHHHHHCCCcccc---eEEEEEeecccCCCC--eEEEEEEEE
Confidence 7999999753 3589996 6899999999999999999999999987653 455555543332222 244556767
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
..........+++|+++++|++++++.+.+.
T Consensus 87 ~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 87 ENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred eecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 6543321112357999999999999876554
No 30
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.49 E-value=4.3e-13 Score=118.00 Aligned_cols=117 Identities=16% Similarity=0.288 Sum_probs=76.9
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCce-eeeEEEEEEe
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRAR-PVGAVSYMDI 297 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~-~~G~isy~~~ 297 (386)
+|.+.... .++ ++++.||+..+ |+|+ ++||++++||++.+||+||++||+||..+....+. ..+.++|...
T Consensus 5 ~v~~ii~~-~~~--~vLL~~r~~~~----~~W~-~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~ 76 (147)
T cd03671 5 NVGVVLFN-EDG--KVFVGRRIDTP----GAWQ-FPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLP 76 (147)
T ss_pred eEEEEEEe-CCC--EEEEEEEcCCC----CCEE-CCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeCh
Confidence 45554443 244 89999998765 8997 78999999999999999999999999875432111 1122345432
Q ss_pred cC---Cc----eeeEEEEEEEEEcCC---CCccCC-CCCceeeEEEEcHHHHHHHHH
Q 016627 298 NG---FS----YKRDVLFCYDLKLPE---DFVPKN-QDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 298 ~~---~g----~~~Ev~~vydl~l~~---~~~p~~-~dgEVe~f~lvsleEv~~~l~ 343 (386)
+. .. +.....++|.+.+.. ++.+++ .++|+.+++|++++|+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 77 PELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred hhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 11 00 112233444444432 344443 267999999999999999874
No 31
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=3.4e-13 Score=115.09 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=75.0
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~ 298 (386)
+|.+.++. .+| +++++||+..+ +||+|+ ++||+++.||++.+||+||++||+|+.... +..++.+...+..
T Consensus 3 av~~~i~~-~~~--~vLL~~r~~~~--~~~~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~ 73 (130)
T cd04681 3 AVGVLILN-EDG--ELLVVRRAREP--GKGTLD-LPGGFVDPGESAEEALIREIREETGLKVTE---LSYLFSLPNTYPY 73 (130)
T ss_pred eEEEEEEc-CCC--cEEEEEecCCC--CCCcEe-CCceeecCCCCHHHHHHHHHHHHhCCcccc---eeEEEeecceeee
Confidence 45554443 244 79999998653 699997 689999999999999999999999998764 3455544322221
Q ss_pred CCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHH
Q 016627 299 GFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVA 339 (386)
Q Consensus 299 ~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~ 339 (386)
.......+.+.|.+.++... +..+.+|+.+++|++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 74 GGMEYDTLDLFFVCQVDDKP-IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred CCceeEEEEEEEEEEeCCCC-CcCChHHhheeEEecHHHCC
Confidence 11111233345667775432 22235799999999999874
No 32
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=7e-13 Score=112.90 Aligned_cols=104 Identities=23% Similarity=0.398 Sum_probs=74.7
Q ss_pred EEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeE
Q 016627 226 VEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRD 305 (386)
Q Consensus 226 v~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~E 305 (386)
+..|+ +|+++||+. .++| .++||+++.||++.+||+||+.||+|+..... ..++...+.+.........
T Consensus 8 i~~~~--~vLl~~~~~-----~~~w-~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 8 IIHNG--KLLVQKNPD-----ETFY-RPPGGGIEFGESSEEALIREFKEELGLKIEIT---RLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred EEECC--EEEEEEeCC-----CCeE-ECCCccccCCCCHHHHHHHHHHHHhCCceecc---eeeEEEEEeeccCCcccEE
Confidence 33466 899999865 5678 59999999999999999999999999987653 4445544332222111245
Q ss_pred EEEEEEEEcCCCCccC------CCCCceeeEEEEcHHHHHH
Q 016627 306 VLFCYDLKLPEDFVPK------NQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 306 v~~vydl~l~~~~~p~------~~dgEVe~f~lvsleEv~~ 340 (386)
+.++|.++++.+.... ..++|+.++.|++++++..
T Consensus 77 ~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 77 IEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred EEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 6788888886543321 1367999999999999874
No 33
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.48 E-value=6.8e-13 Score=116.49 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=75.5
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||... ..+|.|+ ++||++++||++.+||+||++||+||.... ...++.+.+.... +. ..+.++|.+
T Consensus 26 ~vLL~~r~~~--~~~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~~~---~~~~~~~~~~~~~--~~-~~~~~~f~~ 96 (142)
T cd04700 26 DVLLVQEKGG--PKKGLWH-IPSGAVEDGEFPQDAAVREACEETGLRVRP---VKFLGTYLGRFDD--GV-LVLRHVWLA 96 (142)
T ss_pred cEEEEEEcCC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHhhCceeec---cEEEEEEEEEcCC--Cc-EEEEEEEEE
Confidence 5666666432 3589996 779999999999999999999999998765 3455554433322 21 233456766
Q ss_pred EcCC-CCccCCCCCceeeEEEEcHHHHHHHHHcCCCcc
Q 016627 313 KLPE-DFVPKNQDGEVESFQLIPVAHVANVIRRTGFFK 349 (386)
Q Consensus 313 ~l~~-~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fk 349 (386)
.... ...|.. .+|+.+++|++++|+.+++.+ ++.+
T Consensus 97 ~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~-g~i~ 132 (142)
T cd04700 97 EPEGQTLAPKF-TDEIAEASFFSREDVAQLYAQ-GQLR 132 (142)
T ss_pred EecCCccccCC-CCCEEEEEEECHHHhhhcccc-cccc
Confidence 6633 334443 479999999999999999987 5554
No 34
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.47 E-value=5.2e-13 Score=114.95 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=76.0
Q ss_pred EEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeE
Q 016627 226 VEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRD 305 (386)
Q Consensus 226 v~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~E 305 (386)
+.++| ++++.+|+..+ ++|+| .++||+++.||++.+||+||++||+||.... ...++.+.+..... ....
T Consensus 8 i~~~~--~vLL~~r~~~~--~~~~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~--~~~~ 77 (137)
T cd03427 8 IKDPD--KVLLLNRKKGP--GWGGW-NGPGGKVEPGETPEECAIRELKEETGLTIDN---LKLVGIIKFPFPGE--EERY 77 (137)
T ss_pred EEECC--EEEEEEecCCC--CCCeE-eCCceeCCCCCCHHHHHHHHHHHhhCeEeec---ceEEEEEEEEcCCC--CcEE
Confidence 43455 79999998775 89999 5889999999999999999999999998764 34556666544321 1235
Q ss_pred EEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 306 VLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 306 v~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
..++|.+....... .. ..|..+++|++++|+.+.
T Consensus 78 ~~~~f~~~~~~~~~-~~-~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 78 GVFVFLATEFEGEP-LK-ESEEGILDWFDIDDLPLL 111 (137)
T ss_pred EEEEEEECCccccc-CC-CCccccceEEcHhhcccc
Confidence 67777776544322 22 345678999999998654
No 35
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.47 E-value=9.1e-13 Score=112.25 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=74.6
Q ss_pred EEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCcee
Q 016627 224 GYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYK 303 (386)
Q Consensus 224 gyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~ 303 (386)
+|...+++.++++.||+. |.|+ ++||+++.||++.+||+||++||+||....... ++.+.+.......-.
T Consensus 9 i~~~~~~~~~vLl~~~~~------~~w~-~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~---~~~~~~~~~~~~~~~ 78 (130)
T cd03428 9 IYRRLNNEIEYLLLQASY------GHWD-FPKGHVEPGEDDLEAALRETEEETGITAEQLFI---VLGFKETLNYQVRGK 78 (130)
T ss_pred EEEecCCCceEEEEEccC------CcCc-CCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh---hccceeEEEccccCc
Confidence 344445566788888875 7885 789999999999999999999999998775432 222221111110011
Q ss_pred eEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 304 RDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 304 ~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
....+.|.+.+..+..+.++ +|+.++.|++++|+.+++..
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~~ 118 (130)
T cd03428 79 LKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLTY 118 (130)
T ss_pred ceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcCc
Confidence 34456677776533334443 79999999999999987754
No 36
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.7e-13 Score=112.80 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=75.4
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCC-ccCCceeeeEEEEEEe
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRS-ISNRARPVGAVSYMDI 297 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~-~~~~l~~~G~isy~~~ 297 (386)
+|++.++. .+| ++++.||+..+ .|+ ++||+++.||++.+||+||++||+|+... . ...++.+.+...
T Consensus 2 ~~~~~i~~-~~~--~vLL~~r~~~~-----~w~-~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~~ 69 (120)
T cd04680 2 GARAVVTD-ADG--RVLLVRHTYGP-----GWY-LPGGGLERGETFAEAARRELLEELGIRLAVV---AELLGVYYHSAS 69 (120)
T ss_pred ceEEEEEC-CCC--eEEEEEECCCC-----cEe-CCCCcCCCCCCHHHHHHHHHHHHHCCccccc---cceEEEEecCCC
Confidence 45555443 234 78888886443 786 78999999999999999999999999876 3 345555544321
Q ss_pred cCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 298 NGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 298 ~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
. ....+++|.+....... ...++|+.+++|++++++.+++
T Consensus 70 ~----~~~~~~~f~~~~~~~~~-~~~~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 70 G----SWDHVIVFRARADTQPV-IRPSHEISEARFFPPDALPEPT 109 (120)
T ss_pred C----CceEEEEEEecccCCCc-cCCcccEEEEEEECHHHCcccC
Confidence 1 13456778777654321 2346899999999999987644
No 37
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4e-13 Score=114.58 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=72.4
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEE----EE
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV----SY 294 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~i----sy 294 (386)
++++.++. .++ ++++++|+.. |.|+ ++||+++.||++.+||+||++||+|+..... ..++.+ .|
T Consensus 9 ~~~~~v~~-~~~--~vLL~~r~~~-----~~w~-~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~---~~~~~~~~~~~~ 76 (132)
T cd04677 9 GAGVILLN-EQG--EVLLQKRSDT-----GDWG-LPGGAMELGESLEETARRELKEETGLEVEEL---ELLGVYSGKEFY 76 (132)
T ss_pred ceEEEEEe-CCC--CEEEEEecCC-----CcEE-CCeeecCCCCCHHHHHHHHHHHHhCCeeeee---EEEEEecCCcee
Confidence 45555443 234 7899999754 7896 7899999999999999999999999987653 333322 12
Q ss_pred EEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 295 MDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 295 ~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
........ ..+..+|.+....+..+...++|+.+++|++++|+.+++.
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 77 VKPNGDDE-QYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred ecCCCCcE-EEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 11111111 1233333333322333333468999999999999987765
No 38
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=8.4e-13 Score=112.69 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=76.3
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
+|+++||+.. .++|+|+ ++||++..||++.+||+||++||+|+.... ...++.+...... .+. ..+...|.+
T Consensus 15 ~iLl~~r~~~--~~~~~w~-~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~---~~~~~~~~~~~~~-~~~-~~~~~~~~~ 86 (129)
T cd04678 15 KVLLGKRKGS--HGAGTWA-LPGGHLEFGESFEECAAREVLEETGLHIEN---VQFLTVTNDVFEE-EGK-HYVTIFVKA 86 (129)
T ss_pred eEEEEeccCC--CCCCeEE-CCcccccCCCCHHHHHHHHHHHHhCCcccc---eEEEEEEeEEeCC-CCc-EEEEEEEEE
Confidence 8999999864 5789996 789999999999999999999999998764 3445544332221 122 233445666
Q ss_pred EcCCC-CccCC-CCCceeeEEEEcHHHHHHHHHcCCCccc
Q 016627 313 KLPED-FVPKN-QDGEVESFQLIPVAHVANVIRRTGFFKP 350 (386)
Q Consensus 313 ~l~~~-~~p~~-~dgEVe~f~lvsleEv~~~l~~~~~Fkp 350 (386)
.+..+ ..+.. +.+|+.+++|++++++.++ +..|+|
T Consensus 87 ~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~---~~~~~~ 123 (129)
T cd04678 87 EVDDGEAEPNKMEPEKCEGWEWFDWEELPSV---DPLFLP 123 (129)
T ss_pred EeCCCCcccCCCCCceeCceEEeCHHHCCCc---chhhHH
Confidence 66543 22221 3578999999999999875 257777
No 39
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.45 E-value=1.7e-12 Score=114.45 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~ 298 (386)
+|.+.++. .+| +|++.||... .+||+|+ ++||+++.||++.+||+||++||+||..... .+..++.+.+.+..
T Consensus 14 ~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~-lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~-~~~~l~~~~~~~~~ 86 (144)
T cd03430 14 SIDLIVEN-EDG--QYLLGKRTNR--PAQGYWF-VPGGRIRKNETLTEAFERIAKDELGLEFLIS-DAELLGVFEHFYDD 86 (144)
T ss_pred EEEEEEEe-CCC--eEEEEEccCC--CCCCcEE-CCCceecCCCCHHHHHHHHHHHHHCCCcccc-cceEEEEEEEEecc
Confidence 34444432 234 8999998753 4899997 8899999999999999999999999987642 23555655443321
Q ss_pred C---Cce-eeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 299 G---FSY-KRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 299 ~---~g~-~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
. ... ...+..+|.+.+..... ...++|+.+++|++++++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 87 NFFGDDFSTHYVVLGYVLKLSSNEL-LLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ccccCCCccEEEEEEEEEEEcCCcc-cCCchhccEeEEecHHHHhcC
Confidence 1 111 12334556666654322 223689999999999998753
No 40
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=2.1e-12 Score=109.14 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=72.6
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||+..+..++|+|+ ++||+++.||++.+||+||++||+|+..... ...+.. +.+. ..+....+.++|.+
T Consensus 14 ~iLl~kr~~~~~~~~g~w~-~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~---~~~~~~-~~~~-~~~~~~~~~~~~~~ 87 (129)
T cd04699 14 RILILKRSKDERTAPGKWE-LPGGKVEEGETFEEALKREVYEETGLTVTPF---LRYPST-VTHE-DSGVYNVIYLVFVC 87 (129)
T ss_pred cEEEEEecCCCCCCCCcCc-CCccCccCCCCHHHHHHHHHHHhhCcEEEee---eeeeEE-EEEc-CCCEEEEEEEEEEe
Confidence 7999999988877999997 6899999999999999999999999987542 222222 1221 12222233445555
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
...... ...++|+.+++|++++++..+...
T Consensus 88 ~~~~~~--~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 88 EALSGA--VKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred eecCCc--ccCChhheEEEEecHHHhhhhhcc
Confidence 443221 223578999999999999665543
No 41
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.44 E-value=3.4e-12 Score=108.49 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=73.7
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceee
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKR 304 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~ 304 (386)
++..+| ++++.||.. .+.|. ++||+++.||++.+||+||++||+|+.... ...++.+.+.+........
T Consensus 7 vi~~~~--~vLlv~~~~-----~~~~~-lPGG~ve~gEt~~~aa~REl~EEtGl~~~~---~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 7 IVRAGN--KVLLARVIG-----QPHYF-LPGGHVEPGETAENALRRELQEELGVAVSD---GRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred EEEeCC--EEEEEEecC-----CCCEE-CCCCcCCCCCCHHHHHHHHHHHHhCceeec---cEEEEEEeeeeccCCceEE
Confidence 344455 788888743 25674 889999999999999999999999998764 4566776665544333345
Q ss_pred EEEEEEEEEcCCCC-c-cCCCCCceeeEEEEcHHHH
Q 016627 305 DVLFCYDLKLPEDF-V-PKNQDGEVESFQLIPVAHV 338 (386)
Q Consensus 305 Ev~~vydl~l~~~~-~-p~~~dgEVe~f~lvsleEv 338 (386)
.+.++|.+.++.+. . ....++|+.+++|++++|+
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 111 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDL 111 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHc
Confidence 66778888775321 1 1223568999999999994
No 42
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.42 E-value=2.9e-12 Score=115.62 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=73.7
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec---CCce-eeEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN---GFSY-KRDVL 307 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~---~~g~-~~Ev~ 307 (386)
.+|++.||+. ..++|+|. ++||+|+.|||+.+||+||++||+||.+... ..++++...+.+.. +..+ ..-+.
T Consensus 29 g~VLL~kR~~--~~~~g~W~-lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (159)
T PRK15434 29 GEFLLGKRTN--RPAQGYWF-VPGGRVQKDETLEAAFERLTMAELGLRLPIT-AGQFYGVWQHFYDDNFSGTDFTTHYVV 104 (159)
T ss_pred CEEEEEEccC--CCCCCcEE-CCceecCCCCCHHHHHHHHHHHHHCCccccc-cceEEEEEEeecccccCCCccceEEEE
Confidence 4899999974 34789997 8899999999999999999999999986532 12445544433321 1111 12345
Q ss_pred EEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 308 FCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 308 ~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
++|.++...+ .+..+++|+.+++|++++|+.+.
T Consensus 105 ~~f~~~~~~g-~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 105 LGFRLRVAEE-DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred EEEEEEecCC-cccCChHHeeEEEEEeHHHhhhc
Confidence 6677776543 22323579999999999998764
No 43
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=2.3e-12 Score=109.72 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCC-ceeeEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGF-SYKRDVLFCYD 311 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~-g~~~Ev~~vyd 311 (386)
+|++.||.. ++|+|. ++||+++.||++.+||+||++||+||..... ...+...|.+.... .....+.+.|.
T Consensus 15 ~iLL~r~~~----~~~~w~-lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (125)
T cd04696 15 RILLVRTTK----WRGLWG-VPGGKVEWGETLEEALKREFREETGLKLRDI---KFAMVQEAIFSEEFHKPAHFVLFDFF 86 (125)
T ss_pred CEEEEEccC----CCCcEe-CCceeccCCCCHHHHHHHHHHHHhCCccccc---ceEEEEEEeccCCCCCccEEEEEEEE
Confidence 789998752 689996 7899999999999999999999999987653 23333333322111 11123455666
Q ss_pred EEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 312 LKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 312 l~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
+..... .+++ ++|+.+++|++++|+.++
T Consensus 87 ~~~~~~-~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 87 ARTDGT-EVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEecCC-cccC-CcccceeEEECHHHHhcC
Confidence 666432 2332 479999999999998764
No 44
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=2.7e-12 Score=110.62 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLF 308 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~ 308 (386)
+++.++++.||+.. ++|.|. .+||+++.||++.+||+||++||+||....+. ..+.+.+.+... .-...+..
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~---~~~~~~~~~~~~-~~~~~~~~ 82 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWC-HVAGGVEAGETAWQAALRELKEETGISLPELY---NADYLEQFYEAN-DNRILMAP 82 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEE-CCcccccCCCCHHHHHHHHHHHHhCCCccccc---cccceeeEeecC-CceEEEEE
Confidence 34458999999754 889995 89999999999999999999999999876432 222222222221 11123455
Q ss_pred EEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 309 CYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 309 vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
+|.+.+...-..++ ++|+.+.+|++++|+.+++..
T Consensus 83 ~f~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~~ 117 (131)
T cd04695 83 VFVGFVPPHQEVVL-NHEHTEYRWCSFAEALELAPF 117 (131)
T ss_pred EEEEEecCCCcccc-CchhcccEecCHHHHHHhcCC
Confidence 66666643222222 479999999999999987643
No 45
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=8.4e-12 Score=106.66 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=72.0
Q ss_pred EEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec----CCc
Q 016627 226 VEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN----GFS 301 (386)
Q Consensus 226 v~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~----~~g 301 (386)
+.+++ ++++.||... .++.| .++||+++.||++.+||+||+.||+|+.+... ...+...|.... ...
T Consensus 8 v~~~~--~vLl~~r~~~---~~~~~-~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~---~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04687 8 IIKND--KILLIKHHDD---GGVWY-ILPGGGQEPGETLEDAAHRECKEEIGIDVEIG---PLLFVREYIGHNPTSELPG 78 (128)
T ss_pred EEECC--EEEEEEEEcC---CCCeE-ECCCcccCCCCCHHHHHHHHHHHHHCCccccC---cEEEEEEEeccCccccCCC
Confidence 33455 7888888643 34667 58899999999999999999999999998653 223333443211 111
Q ss_pred eeeEEEEEEEEEcCCCCc---cCCCCCceeeEEEEcHHHHHHH
Q 016627 302 YKRDVLFCYDLKLPEDFV---PKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 302 ~~~Ev~~vydl~l~~~~~---p~~~dgEVe~f~lvsleEv~~~ 341 (386)
....+.++|.+++..+.. +...++|+.+++|++++++.++
T Consensus 79 ~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 79 HFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred ceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 124567788888764321 1112456779999999998664
No 46
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.38 E-value=6.6e-12 Score=103.15 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=76.2
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYD 311 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vyd 311 (386)
.++++.||+.. ++|+|+ ++||+++.||++.++|+||++||+|+.... ....+.+.|..... ......++|.
T Consensus 12 ~~ill~kr~~~---~~~~~~-~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~ 82 (123)
T cd02883 12 GRVLLVRRADS---PGGLWE-LPGGGVEPGETLEEAAIREVREETGLDVDV---LRLLGVYEVESPDE--GEHAVVFVFL 82 (123)
T ss_pred CCEEEEEEcCC---CCCeEe-CCcccccCCCCHHHHHHHHHHHhhCcccee---eeEEEEEEeeccCC--CceEEEEEEE
Confidence 37999999876 889996 789999999999999999999999997652 23445555544321 1246677888
Q ss_pred EEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 312 LKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 312 l~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
+.++.+.....++.|+.+++|++++++.+..
T Consensus 83 ~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 83 ARLVGGEPTLLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred EEeCCCCcCCCCCCccceEEEEcHHHCcccc
Confidence 8876543322346899999999999988743
No 47
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.38 E-value=8e-12 Score=111.77 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=75.7
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeE----EEE
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGA----VSY 294 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~----isy 294 (386)
+|.+.++. .+| +++++||+. .||.|+ ++||+++.||++.+||.||++||+|+..... ..++. +.|
T Consensus 10 ~v~~~i~~-~~g--~vLL~~r~~----~~~~w~-~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~y 78 (156)
T PRK00714 10 NVGIILLN-RQG--QVFWGRRIG----QGHSWQ-FPQGGIDPGETPEQAMYRELYEEVGLRPEDV---EILAETRDWLRY 78 (156)
T ss_pred eEEEEEEe-cCC--EEEEEEEcC----CCCeEE-CCcccCCCCcCHHHHHHHHHHHHhCCCccce---EEEEEcCCeEEe
Confidence 45555443 255 799999974 268996 7799999999999999999999999987543 33333 334
Q ss_pred EEec------CCceeeEEEEEEEEEcC-C--CCccCC-CCCceeeEEEEcHHHHHHHHH
Q 016627 295 MDIN------GFSYKRDVLFCYDLKLP-E--DFVPKN-QDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 295 ~~~~------~~g~~~Ev~~vydl~l~-~--~~~p~~-~dgEVe~f~lvsleEv~~~l~ 343 (386)
.+.. ..++..+..+.|.+... . .+.+++ .++|+.+++|++++|+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 79 DLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred cCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch
Confidence 3221 11122223445655552 1 233332 357999999999999998764
No 48
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.37 E-value=1.4e-11 Score=105.89 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecC-CceeeEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDING-FSYKRDVL 307 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~-~g~~~Ev~ 307 (386)
+++.++++-+|... |.|. ++||+++.||++.+||+||++||+||..... +..+|.+.|..... .... -..
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~-~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~--~~~l~~~~~~~~~~~~~~~-~~~ 82 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWI-VPKGGPEKDESPAEAAAREAWEEAGVRGKIG--KRPLGRFEYRKRSKNRPPR-CEV 82 (122)
T ss_pred CCceEEEEEEecCC-----CeEE-CCCCCcCCCCCHHHHHHHHHHHHhCCccccc--ceEEEEEEeeecCCCCCce-EEE
Confidence 44456777666432 8895 8999999999999999999999999986542 26777777655421 1111 234
Q ss_pred EEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 308 FCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 308 ~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
++|.+.........+ +.|+.+++|++++|+.+++..
T Consensus 83 ~~f~~~~~~~~~~~~-~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 83 AVFPLEVTEELDEWP-EMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEEeccccCCc-ccCceEEEEecHHHHHHhcCC
Confidence 556666543322222 467889999999999998765
No 49
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.37 E-value=7.7e-12 Score=103.99 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=73.3
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYD 311 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vyd 311 (386)
.+++++||+..+ .++|+|+ ++||++..||++.++|.||+.||+|+.... ...++.+.+.... . ...+++|.
T Consensus 13 ~~~Ll~~r~~~~-~~~g~w~-~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~---~~~~~~~~~~~~~---~-~~~~~~~~ 83 (124)
T cd03425 13 GRILIAQRPAGK-HLGGLWE-FPGGKVEPGETPEQALVRELREELGIEVEV---GELLATVEHDYPD---K-RVTLHVFL 83 (124)
T ss_pred CEEEEEEeCCCC-CCCCeEe-CCCcccCCCCCHHHHHHHHHHHhhCcEEec---cceEEEEEeeCCC---C-eEEEEEEE
Confidence 489999998876 7999997 689999999999999999999999998654 3456666654421 1 23456676
Q ss_pred EEcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 312 LKLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 312 l~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
+...... .. +.|..++.|++++|+.+
T Consensus 84 ~~~~~~~-~~--~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 84 VELWSGE-PQ--LLEHQELRWVPPEELDD 109 (124)
T ss_pred EeeeCCC-cc--cccCceEEEeeHHHccc
Confidence 6654332 12 45788999999999865
No 50
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.37 E-value=1.2e-11 Score=107.78 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=70.9
Q ss_pred eeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeee------
Q 016627 217 AYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG------ 290 (386)
Q Consensus 217 ~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G------ 290 (386)
|.++++.++.. + +.+|++.||+. .|.| .++||++++||++.+||+||++||+||.+... ...+
T Consensus 2 ~~~~~~~v~~~-~-~~~vLLv~r~~-----~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~ 70 (138)
T cd03674 2 HFTASAFVVNP-D-RGKVLLTHHRK-----LGSW-LQPGGHIDPDESLLEAALRELREETGIELLGL---RPLSVLVDLD 70 (138)
T ss_pred cEEEEEEEEeC-C-CCeEEEEEEcC-----CCcE-ECCceecCCCCCHHHHHHHHHHHHHCCCcccc---eeccccccce
Confidence 34555555542 2 13788888754 4788 57999999999999999999999999976542 2222
Q ss_pred EEEEEEecCCc-e-eeEEEEEEEEEcCC-CCccCCCCCceeeEEEEcHHHHHHH
Q 016627 291 AVSYMDINGFS-Y-KRDVLFCYDLKLPE-DFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 291 ~isy~~~~~~g-~-~~Ev~~vydl~l~~-~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
...+....... . ..-+..+|.+.++. +..+ ..++|+.+++|++++|+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 71 VHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAP-PKSDESDAVRWFPLDELASL 123 (138)
T ss_pred eEeecCCCCCCCCCcEEEEEEEEEEccCccccC-CCCCcccccEEEcHHHhhhc
Confidence 11111111110 0 01133457776643 3332 23679999999999998764
No 51
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.34 E-value=8.8e-12 Score=107.88 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=69.9
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYD 311 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vyd 311 (386)
.++++.||+.. .+|+|+ ++||+++.||++.+||+||++||+||.... +..++...+... ..+.+.|.
T Consensus 12 ~~vLL~~r~~~---~~~~w~-lPgG~ie~gEt~~~aA~REl~EEtGl~~~~---~~~l~~~~~~~~------~~~~~~f~ 78 (131)
T cd03429 12 DRILLARQPRF---PPGMYS-LLAGFVEPGESLEEAVRREVKEEVGIRVKN---IRYVGSQPWPFP------SSLMLGFT 78 (131)
T ss_pred CEEEEEEecCC---CCCcCc-CCcccccCCCCHHHHHhhhhhhccCceeee---eEEEeecCCCCC------ceEEEEEE
Confidence 37888888532 268886 789999999999999999999999998754 344444322111 23455676
Q ss_pred EEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 312 LKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 312 l~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
+.+... .+..+++|+.++.|++++++.++
T Consensus 79 ~~~~~~-~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 79 AEADSG-EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEcCC-cccCCchhhhccEeecHHHHhhc
Confidence 766532 23334679999999999999996
No 52
>PLN02325 nudix hydrolase
Probab=99.34 E-value=1.8e-11 Score=108.07 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=73.9
Q ss_pred EEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCcee
Q 016627 224 GYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYK 303 (386)
Q Consensus 224 gyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~ 303 (386)
+++.++| +|+++||+... .-|+| .++||+++.||++.+||+||++||+||.+.. ...++.+.+.........
T Consensus 14 ~vi~~~~--~vLL~rr~~~~--~~g~W-~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~---~~~l~~~~~~~~~~~~~~ 85 (144)
T PLN02325 14 VFLLKGN--SVLLGRRRSSI--GDSTF-ALPGGHLEFGESFEECAAREVKEETGLEIEK---IELLTVTNNVFLEEPKPS 85 (144)
T ss_pred EEEEcCC--EEEEEEecCCC--CCCeE-ECCceeCCCCCCHHHHHHHHHHHHHCCCCcc---eEEEEEecceeecCCCCc
Confidence 3444455 89999997532 33788 4889999999999999999999999998765 345565544332211111
Q ss_pred eEEEEEEEEEcCC-CCccC-CCCCceeeEEEEcHHHHHHH
Q 016627 304 RDVLFCYDLKLPE-DFVPK-NQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 304 ~Ev~~vydl~l~~-~~~p~-~~dgEVe~f~lvsleEv~~~ 341 (386)
..+.++|.+.+.+ ...+. ...+|+.+++|++++++-+.
T Consensus 86 ~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 86 HYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 2344556666533 22332 23467899999999998764
No 53
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.5e-11 Score=107.46 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=76.1
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEE--EEE
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS--YMD 296 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~is--y~~ 296 (386)
++++..++ .+| +|+++||...+..+++.|+ ++||+++.||++.+||+||+.||+|+....+. ..+.... |.+
T Consensus 2 ~~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~-~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~--~~~~~~~~~f~~ 75 (133)
T cd04685 2 AARVVLLD-PDD--RVLLLRGDDPDSPGPDWWF-TPGGGVEPGESPEQAARRELREETGITVADLG--PPVWRRDAAFTF 75 (133)
T ss_pred eEEEEEEc-CCC--eEEEEEEeCCCCCCCCEEE-CCcCCCCCCCCHHHHHHHHHHHHHCCcccccc--ceEEEEEEEEEe
Confidence 46666665 355 7999998876556788996 78999999999999999999999999873222 2222223 222
Q ss_pred ecCCceeeEEEEEEEEEcCC-CCccC----CCCCceeeEEEEcHHHHHHH
Q 016627 297 INGFSYKRDVLFCYDLKLPE-DFVPK----NQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 297 ~~~~g~~~Ev~~vydl~l~~-~~~p~----~~dgEVe~f~lvsleEv~~~ 341 (386)
....+ ....+.|.++++. +.... ...+++.+++|++++|+.+.
T Consensus 76 ~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 76 LGVDG--RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred cCccc--eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 22212 2334567676653 22211 11245778999999998764
No 54
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.33 E-value=1.6e-11 Score=113.73 Aligned_cols=106 Identities=20% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCC-CCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVL 307 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aG-Es~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~ 307 (386)
+++..+++.||+..-+.++|+| .++||++++| |++.+||+||++||+|+..+. +..+|.+...... .++ ..
T Consensus 41 ~~~~~vLl~~R~~~~r~~~G~~-~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~---~~~lg~l~~~~~~-~~~---~~ 112 (190)
T PRK10707 41 RPQPTLLLTQRSIHLRKHAGQV-AFPGGAVDPTDASLIATALREAQEEVAIPPSA---VEVIGVLPPVDSS-TGY---QV 112 (190)
T ss_pred CCCCEEEEEEeCCcccCCCCcE-EcCCcccCCCcccHHHHHHHHHHHHHCCCccc---eEEEEEeeeeecc-CCc---EE
Confidence 3334899999998777789999 5999999986 679999999999999998754 4667766533222 232 23
Q ss_pred EEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 308 FCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 308 ~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
+.|.+.++.+..+.++++||+++.|+|++++.++.
T Consensus 113 ~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 113 TPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 34444455444555567899999999999998864
No 55
>PLN02709 nudix hydrolase
Probab=99.33 E-value=1.3e-11 Score=117.02 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=79.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCCC-CHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVL 307 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGE-s~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~ 307 (386)
+++.+|++.||+.+...+||.| .++||++++|+ ++.+||+||++||+||+.+. ...+|.+.... ...++ .+
T Consensus 48 ~~~~~vLl~~Rs~~l~~h~Gqi-afPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~---v~vlg~L~~~~-t~sg~---~V 119 (222)
T PLN02709 48 KNELRVILTKRSSTLSSHPGEV-ALPGGKRDEEDKDDIATALREAREEIGLDPSL---VTIISVLEPFV-NKKGM---SV 119 (222)
T ss_pred CCceEEEEEEcCCCCCCCCCCc-cCCCcccCCCCCCHHHHHHHHHHHHHCCCchh---eEEeeecCCeE-CCCCC---EE
Confidence 3567999999999888899999 69999999975 78999999999999998764 34566654433 22232 24
Q ss_pred EEEEEEcCC--CCccCCCCCceeeEEEEcHHHHHHH
Q 016627 308 FCYDLKLPE--DFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 308 ~vydl~l~~--~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
+.|...++. .+.+.++++||+++.|+|++++++.
T Consensus 120 ~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 120 APVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 555555543 4555566799999999999998753
No 56
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=2.7e-11 Score=103.27 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=63.7
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYD 311 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vyd 311 (386)
.++++.||... ++|+|. ++||+++.||++.+||+||++||+||..... ..++... .+..... ...+. |.
T Consensus 14 ~~vLl~~r~~~---~~~~w~-~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~---~~~~~~~-~~~~~~~-~~~~~--~~ 82 (127)
T cd04670 14 NEVLVVQERNK---TPNGWK-LPGGLVDPGEDIFDGAVREVLEETGIDTEFV---SVVGFRH-AHPGAFG-KSDLY--FI 82 (127)
T ss_pred CeEEEEEccCC---CCCcEE-CCCccCCCCCCHHHHHHHHHHHHHCCCccee---EEEEEEe-cCCCCcC-ceeEE--EE
Confidence 37887776433 889996 6899999999999999999999999987542 2333221 1111111 11222 33
Q ss_pred EEcC-CCCccCCCCCceeeEEEEcHHHHHH
Q 016627 312 LKLP-EDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 312 l~l~-~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
+.+. .+..+...++|+.+++|++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 83 CRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 3332 2223333467999999999999843
No 57
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=2.3e-11 Score=104.45 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=67.6
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||... .++|+|. ++||+++.||++.+||+||++||+|+..... ..++.. .. .. ..+.++|.+
T Consensus 13 ~vLl~~r~~~--~~~~~w~-lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~---~~~~~~---~~-~~---~~~~~~f~a 79 (123)
T cd04671 13 EVLLIQEAKR--SCRGKWY-LPAGRMEPGETIEEAVKREVKEETGLDCEPT---TLLSVE---EQ-GG---SWFRFVFTG 79 (123)
T ss_pred EEEEEEecCC--CCCCeEE-CceeecCCCCCHHHHHHHHHHHHHCCeeecc---eEEEEE---cc-CC---eEEEEEEEE
Confidence 8999999743 4689996 8899999999999999999999999987653 233321 11 11 234567777
Q ss_pred EcCC-CCccCC-CCCceeeEEEEcHHHHH
Q 016627 313 KLPE-DFVPKN-QDGEVESFQLIPVAHVA 339 (386)
Q Consensus 313 ~l~~-~~~p~~-~dgEVe~f~lvsleEv~ 339 (386)
+... .+...+ .++|+.+++|++++|+.
T Consensus 80 ~~~~g~~~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 80 NITGGDLKTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred EEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence 7643 222221 35689999999999983
No 58
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=3.2e-11 Score=102.56 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=67.4
Q ss_pred eCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEE-EecCCceeeEE
Q 016627 228 KDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYM-DINGFSYKRDV 306 (386)
Q Consensus 228 ~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~-~~~~~g~~~Ev 306 (386)
+++ ++++.||.. .|.|+ ++||++++||++.+||+||++||+|+.... . ..++...+. +.........+
T Consensus 11 ~~~--~vLL~~~~~-----~~~w~-~PGG~ve~gEs~~~aa~REl~EEtG~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd04672 11 KDG--KILLVREKS-----DGLWS-LPGGWADVGLSPAENVVKEVKEETGLDVKV-R--KLAAVDDRNKHHPPPQPYQVY 79 (123)
T ss_pred ECC--EEEEEEEcC-----CCcEe-CCccccCCCCCHHHHHHHHHHHHhCCeeeE-e--EEEEEeccccccCCCCceEEE
Confidence 455 677766643 58895 889999999999999999999999997643 2 233332221 11110111244
Q ss_pred EEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHH
Q 016627 307 LFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVI 342 (386)
Q Consensus 307 ~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l 342 (386)
...|.+.+... .+++. +|+.+++|++++++.++.
T Consensus 80 ~~~f~~~~~~~-~~~~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 80 KLFFLCEILGG-EFKPN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred EEEEEEEecCC-cccCC-CceeeeEEECHHHCcccc
Confidence 55677776432 23333 789999999999986654
No 59
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=4.4e-11 Score=100.21 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=69.0
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||.. .|+|. ++||+++.||++.+||+||++||+|+.... ..+..++.+.+......+ .....++|.+
T Consensus 13 ~vLl~~r~~-----~~~w~-~PgG~ve~~Es~~~aa~REl~EEtGl~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~f~~ 84 (118)
T cd04690 13 RVLLVRKRG-----TDVFY-LPGGKIEAGETPLQALIRELSEELGLDLDP-DSLEYLGTFRAPAANEPG-VDVRATVYVA 84 (118)
T ss_pred eEEEEEECC-----CCcEE-CCCCccCCCCCHHHHHHHHHHHHHCCccCh-hheEEEEEEecccccCCC-cEEEEEEEEE
Confidence 677777743 36784 889999999999999999999999997654 225566665543222112 2345677877
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
.++. .+.+ ++|+++++|++++|+..
T Consensus 85 ~~~~--~~~~-~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 85 ELTG--EPVP-AAEIEEIRWVDYDDPAD 109 (118)
T ss_pred cccC--CcCC-CchhhccEEecHHHccc
Confidence 7754 2332 57999999999999744
No 60
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=3e-11 Score=101.51 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=67.2
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEE-----EEEecCCceeeEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS-----YMDINGFSYKRDV 306 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~is-----y~~~~~~g~~~Ev 306 (386)
.++++.||+.. |+|+ ++||+++.||++.+||+||++||+|+..... ..+|... +.+..+ .....+
T Consensus 14 ~~vLl~~r~~~-----~~w~-lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (129)
T cd04676 14 GRVLLIRRSDN-----GLWA-LPGGAVEPGESPADTAVREVREETGLDVEVT---GLVGIYTGPVHVVTYPNG-DVRQYL 83 (129)
T ss_pred CeEEEEEecCC-----CcEE-CCeeccCCCCCHHHHHHHHHHHHhCceeEee---EEEEEeecccceeecCCC-CcEEEE
Confidence 38999999764 8997 7899999999999999999999999976542 2223211 111111 112344
Q ss_pred EEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 307 LFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 307 ~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
.++|.+.+.... +...++|+.+++|++++|+.++
T Consensus 84 ~~~~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 84 DITFRCRVVGGE-LRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEEEEEEeeCCe-ecCCCCceeEEEEEChhhCccc
Confidence 555656554322 2123678999999999998765
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.27 E-value=1.6e-10 Score=106.12 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=75.1
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.|+... ...++.|+ ++||+++.||++.+||+||+.||||+.... +..+|.+.+ .+ +...+.+++|.+
T Consensus 60 ~vlLvrq~r~-~~~~~~~e-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~---l~~l~~~~~---~~-~~~~~~~~~f~a 130 (185)
T PRK11762 60 TLLLIREYAA-GTERYELG-FPKGLIDPGETPLEAANRELKEEVGFGARQ---LTFLKELSL---AP-SYFSSKMNIVLA 130 (185)
T ss_pred EEEEEEeecC-CCCCcEEE-ccceeCCCCCCHHHHHHHHHHHHHCCCCcc---eEEEEEEec---CC-CccCcEEEEEEE
Confidence 5555555322 45677884 899999999999999999999999998764 456665432 11 223455666766
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCccc
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKP 350 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkp 350 (386)
...........+.|..+..|++++|+.+++.+ ++++.
T Consensus 131 ~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~-g~i~d 167 (185)
T PRK11762 131 EDLYPERLEGDEPEPLEVVRWPLADLDELLAR-PDFSE 167 (185)
T ss_pred EccccccCCCCCCceeEEEEEcHHHHHHHHHc-CCCCc
Confidence 53222112334577788899999999999998 67654
No 62
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.27 E-value=6.4e-11 Score=99.85 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLF 308 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~ 308 (386)
+++.+++++||+.. ..++|+|+ ++||+++.||++.++++||+.||+|+.... ...++.+.+.+.. .. -.++
T Consensus 13 ~~~~~vll~rR~~~-~~~~g~w~-~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~---~~~~~~~~~~~~~-~~---~~~~ 83 (129)
T PRK10776 13 NPNNEIFITRRAAD-AHMAGKWE-FPGGKIEAGETPEQALIRELQEEVGITVQH---ATLFEKLEYEFPD-RH---ITLW 83 (129)
T ss_pred CCCCEEEEEEecCC-CCCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCceec---ceEEEEEEeeCCC-cE---EEEE
Confidence 33338999999876 46899997 889999999999999999999999997643 2345555554422 11 1234
Q ss_pred EEEEEcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 309 CYDLKLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 309 vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
+|.+..... .+. +.|+.+.+|++++++..
T Consensus 84 ~~~~~~~~~-~~~--~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 84 FWLVESWEG-EPW--GKEGQPGRWVSQVALNA 112 (129)
T ss_pred EEEEEEECC-ccC--CccCCccEEecHHHCcc
Confidence 455543222 122 45788999999999765
No 63
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.26 E-value=9.4e-11 Score=100.62 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||...+ .++|+|. ++||+++.||++.+|++||+.||+|+..... .+++.+.+... ... -.+++|.+
T Consensus 16 ~vLL~~R~~~~-~~~g~w~-~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~---~~~~~~~~~~~-~~~---~~~~~~~~ 86 (135)
T PRK10546 16 KILLAQRPAHS-DQAGLWE-FAGGKVEPGESQPQALIRELREELGIEATVG---EYVASHQREVS-GRR---IHLHAWHV 86 (135)
T ss_pred EEEEEEccCCC-CCCCcEE-CCcccCCCCCCHHHHHHHHHHHHHCCccccc---eeEEEEEEecC-CcE---EEEEEEEE
Confidence 79999997654 5899995 8899999999999999999999999986542 34454444321 111 12445554
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
..... .+. ..|..+++|++++++.++
T Consensus 87 ~~~~~-~~~--~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 87 PDFHG-ELQ--AHEHQALVWCTPEEALRY 112 (135)
T ss_pred EEecC-ccc--ccccceeEEcCHHHcccC
Confidence 43211 222 346788999999998764
No 64
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=1.1e-10 Score=97.72 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=66.9
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
+|++.||+. |+|. ++||+++.||++.+||.||+.||+|+.... +..++.+ ... ....++|.+
T Consensus 12 ~vLlv~r~~------~~w~-~PgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~~~~~----~~~----~~~~~~f~~ 73 (112)
T cd04667 12 RVLLVRKSG------SRWA-LPGGKIEPGETPLQAARRELQEETGLQGLD---LLYLFHV----DGG----STRHHVFVA 73 (112)
T ss_pred EEEEEEcCC------CcEe-CCCCcCCCCCCHHHHHHHHHHHHhCCcccc---eEEEEEE----eCC----CEEEEEEEE
Confidence 789998853 8895 889999999999999999999999997643 3343332 111 233466767
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
.++..-.+++ .+|+.+++|++++|+.++..
T Consensus 74 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 74 SVPPSAQPKP-SNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred EcCCcCCCCC-chheeEEEEecHHHhhhccc
Confidence 6654323232 57999999999999987643
No 65
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.23 E-value=1.8e-10 Score=111.48 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=70.2
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
+|++.||...+ +|+|. ++||+++.||++++||+||++||+||.+.. +.++|...+.+ ....++.|.+
T Consensus 144 ~iLL~rr~~~~---~g~ws-lPgG~vE~GEs~eeAa~REv~EEtGl~v~~---~~~~~s~~~~~------p~~lm~~f~a 210 (256)
T PRK00241 144 EILLARHPRHR---NGVYT-VLAGFVEVGETLEQCVAREVMEESGIKVKN---LRYVGSQPWPF------PHSLMLGFHA 210 (256)
T ss_pred EEEEEEccCCC---CCcEe-CcccCCCCCCCHHHHhhhhhhhccCceeee---eEEEEeEeecC------CCeEEEEEEE
Confidence 79999886542 78996 889999999999999999999999997654 45555433321 1245667777
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
+...+ .++.+++|+++.+|++++|+..+
T Consensus 211 ~~~~~-~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 211 DYDSG-EIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred EecCC-cccCCcccEEEEEEECHHHCccc
Confidence 76432 23344689999999999997553
No 66
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=2.4e-10 Score=98.82 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=68.2
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEe--cCCc-
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDI--NGFS- 301 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~--~~~g- 301 (386)
.+.++| +|++.||.. .|.|. ++||+++.||++.+||+||++||||+.... ....++.+...+. ...+
T Consensus 6 ii~~~~--~vLLv~~~~-----~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 6 IILQGD--KILLLYTKR-----YGDYK-FPGGGVEKGEDHIEGLIRELQEETGATNIR--VIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred EEEECC--EEEEEEEcC-----CCcEE-CccccCCCCCCHHHHHHHHHHHHHCCcccc--cceEEEEEEeeccccCCCCc
Confidence 344465 677777643 25785 899999999999999999999999997521 1234555532211 1111
Q ss_pred eeeEEEEEEEEEcCCCC-ccCCCCCce---eeEEEEcHHHHHHHH
Q 016627 302 YKRDVLFCYDLKLPEDF-VPKNQDGEV---ESFQLIPVAHVANVI 342 (386)
Q Consensus 302 ~~~Ev~~vydl~l~~~~-~p~~~dgEV---e~f~lvsleEv~~~l 342 (386)
....+.+.|.+.+.... .++..+.|. -.++|++++|+.+.-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 22344567888875432 233223333 258999999987753
No 67
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.20 E-value=1.6e-10 Score=102.29 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||. .++.|+ ++||+++.||++.+||+||++|||||..... .. ...|..... ....+++|.+
T Consensus 15 ~vLLvr~~-----~~~~W~-lPGG~ve~gEs~~~AA~REl~EETGl~v~~~---~~--~~~~~~~~~---~~~~~~~f~~ 80 (145)
T cd03672 15 KVLLVKGW-----KSKSWS-FPKGKINKDEDDHDCAIREVYEETGFDISKY---ID--KDDYIELII---RGQNVKLYIV 80 (145)
T ss_pred EEEEEEec-----CCCCEE-CCCccCCCCcCHHHHHHHHHHHhhCccceec---cc--cceeeeccc---CCcEEEEEEE
Confidence 78888774 234785 8899999999999999999999999986542 11 112222111 1122333433
Q ss_pred E-cCCCCccCCC-CCceeeEEEEcHHHHHHHHHc
Q 016627 313 K-LPEDFVPKNQ-DGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 313 ~-l~~~~~p~~~-dgEVe~f~lvsleEv~~~l~~ 344 (386)
. ++.+...+++ ++|+.+++|++++|+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 81 PGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred ecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 3 3332222222 479999999999999998876
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.19 E-value=1.3e-10 Score=100.89 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=70.4
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCc--eeeeEEEEEEecCC---ceeeEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRA--RPVGAVSYMDINGF---SYKRDVL 307 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l--~~~G~isy~~~~~~---g~~~Ev~ 307 (386)
++++-||+.. ..|+| .++||+++.|||+.+||+||++||+|+.... ..+ .+++.+.|.+..+. ......+
T Consensus 14 ~~Llvk~~~~---~~g~W-~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (132)
T cd04661 14 LVLLVQQKVG---SQNHW-ILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV 88 (132)
T ss_pred EEEEEEeecC---CCCee-ECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence 6777777543 26889 5999999999999999999999999997653 111 12333444332211 0111346
Q ss_pred EEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 308 FCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 308 ~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
++|.+.+-.+ .+.. ..|+.++.|++++|+.+++..
T Consensus 89 ~~f~~~~~~g-~~~~-~~e~~~~~W~~~~el~~~l~~ 123 (132)
T cd04661 89 FFFKARYMSG-QFEL-SQNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred EEEEEEEecC-cccc-CCCcceeEecCHHHHHhhcCH
Confidence 7787776433 2222 368999999999999987653
No 69
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.17 E-value=2.3e-10 Score=97.51 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=63.6
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.||.... .+.| .++||+++.||++.+||+||++||+|+..... ...+.+.+ . + ...++|.+
T Consensus 13 ~vLL~~r~~~~---~~~w-~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~---~~~~~~~~----~-~---~~~~~f~~ 77 (121)
T cd04669 13 EILLIRRIKPG---KTYY-VFPGGGIEEGETPEEAAKREALEELGLDVRVE---EIFLIVNQ----N-G---RTEHYFLA 77 (121)
T ss_pred EEEEEEEecCC---CCcE-ECCceeccCCCCHHHHHHHHHHHhhCeeEeee---eEEEEEee----C-C---cEEEEEEE
Confidence 78888886532 4778 58999999999999999999999999987542 23333332 1 1 12345656
Q ss_pred EcCC-CCccC-------CCCCceeeEEEEcHHHHHHH
Q 016627 313 KLPE-DFVPK-------NQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 313 ~l~~-~~~p~-------~~dgEVe~f~lvsleEv~~~ 341 (386)
..-. .+... ..+++..+++|++++++.++
T Consensus 78 ~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 78 RVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred EEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 5422 22111 12456778999999998764
No 70
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=6.8e-10 Score=93.96 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=69.3
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
+++++||... ..+.|+|+ ++||+++.||++.++++||+.||+|+..... ..++.+...+. .. ...+++|.+
T Consensus 17 ~vLl~~R~~~-~~~~g~w~-~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~---~~~~~~~h~~~---~~-~~~~~~~~~ 87 (128)
T TIGR00586 17 EIIITRRADG-HMFAKLLE-FPGGKEEGGETPEQAVVRELEEEIGIPQHFS---EFEKLEYEFYP---RH-ITLWFWLLE 87 (128)
T ss_pred EEEEEEEeCC-CCCCCeEE-CCCcccCCCCCHHHHHHHHHHHHHCCcceee---eEEEEEEEECC---Cc-EEEEEEEEE
Confidence 7999999765 57899997 7899999999999999999999999986542 23444433221 11 234667777
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
...+. .+. +.|..++.|++++++.+.
T Consensus 88 ~~~~~-~~~--~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 88 RWEGG-PPG--KEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEcCC-CcC--cccccccEEeCHHHCCcc
Confidence 66433 222 345678899999987663
No 71
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.15 E-value=1.4e-09 Score=101.80 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCC----CCccCCC
Q 016627 248 GMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPE----DFVPKNQ 323 (386)
Q Consensus 248 G~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~----~~~p~~~ 323 (386)
-.| .++||+++.||++.+||+||+.||||+.... +.+++. | +.+ .++..+.+++|.++.+. .......
T Consensus 82 ~~l-E~PAG~vd~gE~p~~aA~REL~EETGy~a~~---~~~l~~--~-~~s-pg~~~e~~~~fla~~~~~~~~~~~~~~d 153 (202)
T PRK10729 82 WLL-EMVAGMIEEGESVEDVARREAIEEAGLIVGR---TKPVLS--Y-LAS-PGGTSERSSIMVGEVDATTASGIHGLAD 153 (202)
T ss_pred eEE-EccceEcCCCCCHHHHHHHHHHHHhCceeeE---EEEEEE--E-EcC-CCcCceEEEEEEEEEcchhcccCCCCCC
Confidence 345 5899999999999999999999999998643 444432 2 222 25567888999887522 1112223
Q ss_pred CCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHc
Q 016627 324 DGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRH 363 (386)
Q Consensus 324 dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRh 363 (386)
++|..+..|+|++|+.+++.+ ++++....++.+-|+..|
T Consensus 154 e~E~i~v~~~~~~e~~~~~~~-G~i~d~~ti~al~~~~~~ 192 (202)
T PRK10729 154 ENEDIRVHVVSREQAYQWVEE-GKIDNAASVIALQWLQLH 192 (202)
T ss_pred CCCceEEEEEcHHHHHHHHHc-CCCCcHHHHHHHHHHHHh
Confidence 567778999999999999998 688755555455555444
No 72
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.14 E-value=6.4e-10 Score=102.59 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=72.5
Q ss_pred CCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCC--ccC-C
Q 016627 246 YPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDF--VPK-N 322 (386)
Q Consensus 246 ~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~--~p~-~ 322 (386)
-|+.| .++||+++.||++++||+||++||+|+.... +..++.+ +.+ .+...+.+++|.+++..+. .+. .
T Consensus 75 ~~~~l-elPaG~ve~gE~~~~aA~REl~EEtG~~~~~---~~~~~~~---~~~-~g~~~~~~~~f~a~~~~~~~~~~~~~ 146 (185)
T TIGR00052 75 EPWLL-ELSAGMVEKGESPEDVARREAIEEAGYQVKN---LRKLLSF---YSS-PGGVTELIHLFIAEVDDNQAAGIGGG 146 (185)
T ss_pred cceEE-EECcEecCCCCCHHHHHHHHccccccceecc---eEEEEEE---EcC-CCCCcEEEEEEEEEEchhhcCCCCCC
Confidence 46777 4899999999999999999999999998754 3444432 222 2344678888988865422 111 1
Q ss_pred CCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHH
Q 016627 323 QDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVII 357 (386)
Q Consensus 323 ~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVll 357 (386)
.++|.....|++++|+.+++.+ ++++....+..+
T Consensus 147 ~~~E~ie~~~~~~~e~~~~~~~-G~i~d~~t~~al 180 (185)
T TIGR00052 147 ADEEEIEVLHLVFSQALQWIKE-GKIDNGKTVILL 180 (185)
T ss_pred CCccceEEEEeCHHHHHHHHHc-CCCCCHHHHHHH
Confidence 2455566889999999999998 677644443333
No 73
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.13 E-value=4.4e-10 Score=96.70 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=69.2
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceee
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKR 304 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~ 304 (386)
.+.+++ ++++.||... ..+|.|+ ++||+++.||++.+|++||++||+|+.+... ..++.. .. .. . .
T Consensus 19 ii~~~~--~vLL~kr~~~--~~~g~w~-lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~---~~~~~~--~~--~~-~-~ 84 (130)
T cd04511 19 VPEWEG--KVLLCRRAIE--PRHGFWT-LPAGFMENGETTEQGALRETWEEAGARVEID---GLYAVY--SV--PH-I-S 84 (130)
T ss_pred EEecCC--EEEEEEecCC--CCCCeEE-CCcccccCCCCHHHHHHHHHHHHhCCEEEee---eEEEEE--ec--CC-c-e
Confidence 333454 7999988653 3679995 8899999999999999999999999986542 233322 11 11 1 2
Q ss_pred EEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHH
Q 016627 305 DVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVA 339 (386)
Q Consensus 305 Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~ 339 (386)
...+.|.+++... .+.. +.|..+.+|++++++-
T Consensus 85 ~~~~~f~~~~~~~-~~~~-~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 85 QVYMFYRARLLDL-DFAP-GPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEEEEEEcCC-cccC-CcchhceEEECHHHCC
Confidence 4566677777543 2222 4578899999999884
No 74
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.11 E-value=1.7e-09 Score=108.58 Aligned_cols=107 Identities=15% Similarity=0.267 Sum_probs=70.0
Q ss_pred EeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEE----EEEEecCCce
Q 016627 227 EKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV----SYMDINGFSY 302 (386)
Q Consensus 227 ~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~i----sy~~~~~~g~ 302 (386)
..+| ++++.||+.. ..+|+|. ++||+++.||++.+||+||++|||||.+.... + .+.+ .|.+......
T Consensus 211 ~~~g--~VLLvrR~~~--p~~g~W~-lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~-l--~~~~~~~~~f~~p~r~~~ 282 (340)
T PRK05379 211 VQSG--HVLLVRRRAE--PGKGLWA-LPGGFLEQDETLLDACLRELREETGLKLPEPV-L--RGSIRDQQVFDHPGRSLR 282 (340)
T ss_pred EECC--EEEEEEecCC--CCCCeEE-CCcccCCCCCCHHHHHHHHHHHHHCCcccccc-c--ceeeeeeEEEcCCCCCCC
Confidence 3466 7888888753 3589995 88999999999999999999999999865421 1 1211 1222211000
Q ss_pred eeEEEEEEEEEcCCCCccC-CCCCceeeEEEEcHHHHHHH
Q 016627 303 KRDVLFCYDLKLPEDFVPK-NQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 303 ~~Ev~~vydl~l~~~~~p~-~~dgEVe~f~lvsleEv~~~ 341 (386)
...+.++|.+.++.+-.+. ..++|+.+++|++++|+.++
T Consensus 283 ~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 283 GRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 1234455656555322221 12468999999999999875
No 75
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.09 E-value=1.4e-09 Score=94.91 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=65.8
Q ss_pred EEEeCCeEEEEEEecCCC--CCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecC---
Q 016627 225 YVEKDGQKFLWIGKRSQV--KPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDING--- 299 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~--K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~--- 299 (386)
|...++++++++.+|... +...+|.|+ ++||+++.||++.+||+||++||+|+.... .+..++. +....+
T Consensus 8 ~~~~~~~~~vlL~~~~~~~~~~~~~~~W~-lPgG~ie~~E~~~~aA~REl~EEtGl~~~~--~~~~l~~--~~~~~~~~v 82 (126)
T cd04662 8 YRFRDGRIEVLLVHPGGPFWANKDLGAWS-IPKGEYTEGEDPLLAAKREFSEETGFCVDG--PFIDLGS--LKQSGGKVV 82 (126)
T ss_pred EEEcCCcEEEEEEEccCccccCCCCCEEE-CCcccCCCCcCHHHHHHHHHHHHhCCccee--eEEeEEE--EECCCCeEE
Confidence 443456678888887543 345679996 789999999999999999999999998652 1222211 111111
Q ss_pred --------CceeeEEEEEEEEEcCCCCccCCC-CCceeeEEEEcH
Q 016627 300 --------FSYKRDVLFCYDLKLPEDFVPKNQ-DGEVESFQLIPV 335 (386)
Q Consensus 300 --------~g~~~Ev~~vydl~l~~~~~p~~~-dgEVe~f~lvsl 335 (386)
..+......+|.++.+. -.++.. ++|++++.|+|+
T Consensus 83 ~~fl~~~~~d~~~~~~~~f~~~~~~-~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 83 HAWAVEADLDITDIKSNTFEMEWPK-GSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EEEEEEecCChhHeEEEEEEEEccC-CCCccccCCccceeEeecC
Confidence 11112334455555442 223333 589999999873
No 76
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.07 E-value=1.1e-08 Score=92.41 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=92.1
Q ss_pred cCCCCceeEEEEcccccccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHh
Q 016627 195 STFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEE 274 (386)
Q Consensus 195 d~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~E 274 (386)
|.+|.++-...+...... ..-|+.+....++ ++++.++.. ..| .++||+++.||++.+||+||++|
T Consensus 5 d~~~~~v~l~~~~~~~~~-----~~~~V~ii~~~~~--~~LL~~~~~------~~~-elPgG~vE~gEt~~eaA~REl~E 70 (156)
T TIGR02705 5 DYYGNKVTLAFEKEPFSP-----NPNHVLVIPRYKD--QWLLTEHKR------RGL-EFPGGKVEPGETSKEAAIREVME 70 (156)
T ss_pred cCCCCEEEEEEeCCcccC-----CCCEEEEEEEECC--EEEEEEEcC------CcE-ECCceecCCCCCHHHHHHHHHHH
Confidence 555655555555543211 1225555554455 444444432 136 48999999999999999999999
Q ss_pred HhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHcCCCc----cc
Q 016627 275 EAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRRTGFF----KP 350 (386)
Q Consensus 275 EaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~F----kp 350 (386)
|+|+.... +.++|.+.. .. +...++.++|.+++. ...+. ++..+-...++++++.+++..+..| |.
T Consensus 71 ETG~~~~~---~~~lg~~~~--~~--~~~~~~~~vf~A~~~-~~~~~--~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d 140 (156)
T TIGR02705 71 ETGAIVKE---LHYIGQYEV--EG--ESTDFVKDVYFAEVS-ALESK--DDYLETKGPVLLQEIPDIIKADPRFSFIMKD 140 (156)
T ss_pred HhCcEeee---eEEEEEEEe--cC--CCcEEEEEEEEEEEe-ccccC--CCceeeEeEEEHHHHHHHHhcCCcccEEEch
Confidence 99997653 567775322 22 224677888888875 33433 3334433479999999999885433 44
Q ss_pred ChHHHHHHHHHHcCC
Q 016627 351 NCSLVIIDFLFRHGY 365 (386)
Q Consensus 351 n~~lVllDfliRhG~ 365 (386)
..-.-+++.+.+.|+
T Consensus 141 ~~~~~~~~~~~~~~~ 155 (156)
T TIGR02705 141 DVLLKCLERAKHIGF 155 (156)
T ss_pred HHHHHHHHHHHHccC
Confidence 444455666655655
No 77
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.07 E-value=3.9e-09 Score=97.97 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=78.5
Q ss_pred cccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCC--CCccC-CCCCcee
Q 016627 252 HLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPE--DFVPK-NQDGEVE 328 (386)
Q Consensus 252 ~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~--~~~p~-~~dgEVe 328 (386)
.+|||.++.| +|++||+||+.||||+.... +..++.+ +.+ .|+..+.+++|.++... ...+. ..++|..
T Consensus 82 ElPAG~vd~~-~p~~aA~REL~EETGy~a~~---~~~l~~~---~~s-pG~s~e~~~lf~a~~~~~~~~~~~~~de~E~i 153 (191)
T PRK15009 82 ETCAGLLDND-EPEVCIRKEAIEETGYEVGE---VRKLFEL---YMS-PGGVTELIHFFIAEYSDSQRANAGGGVEDEDI 153 (191)
T ss_pred EEeccccCCC-CHHHHHHHHHHHhhCCccce---EEEeeEE---EcC-CcccCcEEEEEEEEECchhcccCCCCCCCceE
Confidence 5889999966 69999999999999998754 4554432 233 35667889999888531 12221 2367888
Q ss_pred eEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCC
Q 016627 329 SFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYI 366 (386)
Q Consensus 329 ~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i 366 (386)
+..|+|++|+.+++.+ ++++....++.+-++..+|+.
T Consensus 154 ev~~~~~~e~~~~i~~-G~i~da~ti~al~~~~~~~~~ 190 (191)
T PRK15009 154 EVLELPFSQALEMIKT-GEIRDGKTVLLLNYLQTSHLM 190 (191)
T ss_pred EEEEEcHHHHHHHHHc-CCCCcHHHHHHHHHHHHhccC
Confidence 9999999999999998 788766666677777777764
No 78
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.7e-09 Score=96.06 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=75.2
Q ss_pred EEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecC
Q 016627 220 VHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDING 299 (386)
Q Consensus 220 VHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~ 299 (386)
+-+.+.+..+| +|++-||+. ..++|+| .++||+++.|||+.+||.||++|||||.+.. +..++.+.....++
T Consensus 11 ~~v~~~i~~~~--~iLLvrR~~--~p~~g~W-alPGG~ve~GEt~eeaa~REl~EETgL~~~~---~~~~~v~~~~~rd~ 82 (145)
T COG1051 11 VAVGALIVRNG--RILLVRRAN--EPGAGYW-ALPGGFVEIGETLEEAARRELKEETGLRVRV---LELLAVFDDPGRDP 82 (145)
T ss_pred eeeeEEEEeCC--EEEEEEecC--CCCCCcE-eCCCccCCCCCCHHHHHHHHHHHHhCCcccc---eeEEEEecCCCCCC
Confidence 34445555566 888888865 4678999 6999999999999999999999999999554 34444443333322
Q ss_pred CceeeEEEEEEEEEc-CCCCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 300 FSYKRDVLFCYDLKL-PEDFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 300 ~g~~~Ev~~vydl~l-~~~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
.+. -+.++|-... .++..+.. .++..+..|++.+++.....
T Consensus 83 r~~--~v~~~~~~~~~~g~~~~~~-~~d~~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 83 RGH--HVSFLFFAAEPEGELLAGD-GDDAAEVGWFPLDELPELPL 124 (145)
T ss_pred cee--EEEEEEEEEecCCCcccCC-hhhHhhcceecHhHcccccc
Confidence 222 2333343333 33333331 13788899999999887644
No 79
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.98 E-value=2.1e-09 Score=101.74 Aligned_cols=117 Identities=22% Similarity=0.198 Sum_probs=83.3
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCC-CHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEE-
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYMD- 296 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGE-s~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~- 296 (386)
+|-+-.+...+|+.+++++|||.+-+++||.. +++||..+..+ +-..+|.||+.||.|++.+.+ ..+|...-..
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev-~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~---~~~g~l~~~~~ 120 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEV-CFPGGRRDPHDKSDIQTALRETEEEIGLDPELV---DVLGALPPFVL 120 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCce-eCCCCcCCccccchHHHHHHHHHHHhCCCHHHh---hhhhhccceee
Confidence 34555555446788999999999999999999 79999998765 566799999999999998654 3344332211
Q ss_pred ecCCceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHH
Q 016627 297 INGFSYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANV 341 (386)
Q Consensus 297 ~~~~g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~ 341 (386)
..+..+.+-+.++++-.+- ..+.++.|||++..|+|+++++.-
T Consensus 121 r~~~~v~p~v~~l~~~~~l--~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 121 RSGWSVFPVVGFLSDKKIL--PSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred ccCcccceeEEEEeccccc--ccccCCchheeeeeeeeHHHHhhh
Confidence 2233445555565554331 233445799999999999998754
No 80
>PRK08999 hypothetical protein; Provisional
Probab=98.95 E-value=7.5e-09 Score=101.69 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=73.2
Q ss_pred EEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCC
Q 016627 221 HMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGF 300 (386)
Q Consensus 221 Hlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~ 300 (386)
++.+.+..+++.++|++||... ..++|+|+ ++||+++.||++.++++||+.||+|+..... ..++.+.+.+..
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~-~~~~g~w~-~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~---~~l~~~~h~~~~-- 78 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEG-KHQGGLWE-FPGGKVEPGETVEQALARELQEELGIEVTAA---RPLITVRHDYPD-- 78 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCC-CCCCCeEE-CCccCCCCCCCHHHHHHHHHHHHhCCceecc---eeEEEEEEEcCC--
Confidence 3444433333238999999765 46999996 8899999999999999999999999976532 334444433221
Q ss_pred ceeeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 301 SYKRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 301 g~~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
. ...+++|.+..... .++ ..|..+++|++++|+.+
T Consensus 79 ~--~~~i~~y~~~~~~~-~~~--~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 79 K--RVRLDVRRVTAWQG-EPH--GREGQPLAWVAPDELAV 113 (312)
T ss_pred C--eEEEEEEEEEEecC-ccc--CccCCccEEecHHHccc
Confidence 1 12356666655322 222 45788899999998765
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=98.94 E-value=8.7e-08 Score=94.45 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=82.9
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCC-CCHHHHHHHHHHhHhCCCCCccCCceeeeEEE------EEEecCCc
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVS------YMDINGFS 301 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aG-Es~~eaaiREl~EEaGL~~~~~~~l~~~G~is------y~~~~~~g 301 (386)
+++.++++.|+... +.-.-.| .++||+++.| |++.+||+||++||+|+.... .++..++... -.+..+ |
T Consensus 140 ~ge~~VlLVrQ~R~-pvg~~~l-E~PAG~lD~~~edp~~aA~REL~EETG~~~~a-~~lv~L~~~~~~~~g~~v~psp-G 215 (291)
T PLN03143 140 EGETYAVLTEQVRV-PVGKFVL-ELPAGMLDDDKGDFVGTAVREVEEETGIKLKL-EDMVDLTAFLDPSTGCRMFPSP-G 215 (291)
T ss_pred CCCEEEEEEEeEec-CCCcEEE-EecccccCCCCCCHHHHHHHHHHHHHCCcccc-ceEEEeeeccccCcCceEEecC-C
Confidence 45555666555432 1112256 5889999974 899999999999999997542 1233332110 122332 4
Q ss_pred eeeEEEEEEEEEc--CCC-C-------ccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCC
Q 016627 302 YKRDVLFCYDLKL--PED-F-------VPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYI 366 (386)
Q Consensus 302 ~~~Ev~~vydl~l--~~~-~-------~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i 366 (386)
+.+|.+++|.++- +.. + .....++|.....+++++|+.+++.+ + |.-.++.+++++.+.|++
T Consensus 216 ~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD-~--ktl~al~l~~~~k~~g~~ 287 (291)
T PLN03143 216 GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD-A--KVLMAIALYEMAKREGLL 287 (291)
T ss_pred ccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh-H--HHHHHHHHHHHHHhcCCC
Confidence 4567777665443 211 0 01124688889999999999999875 2 455567778888899987
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.89 E-value=2.1e-09 Score=104.50 Aligned_cols=97 Identities=20% Similarity=0.372 Sum_probs=70.6
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++++.+|.+++ |||+- +.||-|++|||+++|++||++||+||.+.. +.|....+..+-.-.+--|-.
T Consensus 156 ~ilLa~~~~h~---~g~yS-~LAGFVE~GETlE~AV~REv~EE~Gi~V~~---------vrY~~SQPWPfP~SLMigf~a 222 (279)
T COG2816 156 EILLARHPRHF---PGMYS-LLAGFVEPGETLEQAVAREVFEEVGIKVKN---------VRYVGSQPWPFPHSLMLGFMA 222 (279)
T ss_pred ceeecCCCCCC---Cccee-eeeecccCCccHHHHHHHHHHHhhCeEEee---------eeEEeccCCCCchhhhhhhee
Confidence 38899888764 99995 669999999999999999999999997753 445443332221122222333
Q ss_pred Ec-CCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 313 KL-PEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 313 ~l-~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
+. .+++.++ .+|+++.+|.+.+|++.++..
T Consensus 223 ey~sgeI~~d--~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 223 EYDSGEITPD--EGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred eeccccccCC--cchhhhccccCHhHHhhhcCC
Confidence 33 3455554 689999999999999998864
No 83
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.84 E-value=3.5e-08 Score=84.87 Aligned_cols=96 Identities=15% Similarity=-0.035 Sum_probs=63.4
Q ss_pred EEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCcee
Q 016627 224 GYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYK 303 (386)
Q Consensus 224 gyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~ 303 (386)
+....++ ++++.+|. .+.|+ ++||+++.||++.+||+||++||+|+.... +.++|.+.+... . .
T Consensus 5 vi~~~~~--~vLl~~~~------~~~w~-lPgG~ve~gE~~~~aa~REl~EE~G~~~~~---~~~l~~~~~~~~--~--~ 68 (118)
T cd04665 5 VICFYDD--GLLLVRHK------DRGWE-FPGGHVEPGETIEEAARREVWEETGAELGS---LTLVGYYQVDLF--E--S 68 (118)
T ss_pred EEEEECC--EEEEEEeC------CCEEE-CCccccCCCCCHHHHHHHHHHHHHCCccCc---eEEEEEEEecCC--C--C
Confidence 3443455 56666653 14685 889999999999999999999999998743 566666543221 1 1
Q ss_pred eEEEEEEEEEcCCCCccCCCCCceeeEEEEcHH
Q 016627 304 RDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVA 336 (386)
Q Consensus 304 ~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsle 336 (386)
....++|.+.+.......+ ..|+....|++.+
T Consensus 69 ~~~~~~y~a~~~~~~~~~~-~~E~~~~~~~~~~ 100 (118)
T cd04665 69 GFETLVYPAVSAQLEEKAS-YLETDGPVLFKNE 100 (118)
T ss_pred cEEEEEEEEEEEecccccc-cccccCcEEeccC
Confidence 2445667666643222222 4789999988854
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.84 E-value=2.9e-08 Score=82.66 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=67.0
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHH-HHHHHHHhHhCCCCCccCCceeeeEEEEEEecCC---ceeeEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGE-NIIKECEEEAGIPRSISNRARPVGAVSYMDINGF---SYKRDVL 307 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~e-aaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~---g~~~Ev~ 307 (386)
.++++.+|...+ |.|+ ++||+++.||++.+ ||+||++|||||.... .....++.+........ .......
T Consensus 24 ~~vl~~~~~~~~----~~~~-~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (161)
T COG0494 24 GEVLLAQRRDDG----GLWE-LPGGKVEPGEELPEEAAARELEEETGLRVKD-ERLELLGEFPPSPGDGSSVGGREHRVF 97 (161)
T ss_pred CEEeEEEccccC----Ccee-cCCcccCCCCchHHHHHHHHHHHHhCCeeee-ecceeeeeccCcccCcccccceEEEEE
Confidence 489999998775 7885 88999999999988 9999999999998763 11334443332221111 1111222
Q ss_pred EEEEEEcCCCCccCCC---CCceeeEEEEcHHHHHHHHHc
Q 016627 308 FCYDLKLPEDFVPKNQ---DGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 308 ~vydl~l~~~~~p~~~---dgEVe~f~lvsleEv~~~l~~ 344 (386)
+.+.........+... ..|...+.|+++++.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 98 FVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred EeeeccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 2222222222333222 258999999999988776543
No 85
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.80 E-value=5.6e-08 Score=84.81 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred EEEEEeC-CeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCC
Q 016627 223 NGYVEKD-GQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPR 280 (386)
Q Consensus 223 ngyv~~d-g~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~ 280 (386)
.+++..+ ++.+|++-|+.. +.| .++||++++||++.+||+||+.||+|+..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~------~~~-~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPL------AGF-QIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEeCCceEEEEEEEcCC------CcE-ECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3444443 335676665543 347 58999999999999999999999999986
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.60 E-value=2e-08 Score=98.69 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=67.6
Q ss_pred EEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceee
Q 016627 225 YVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKR 304 (386)
Q Consensus 225 yv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~ 304 (386)
.+..||+ ++++.| .|+.-||+|- ++||-+++|||.+||++||.+||+|+.++. |.|....+....+
T Consensus 194 li~~d~~-~~LL~R---~~r~~~gl~t-~lAGFlEpGES~eeav~REtwEEtGi~V~~---------I~~~asQPWP~~p 259 (345)
T KOG3084|consen 194 LIDHDGK-HALLGR---QKRYPPGLWT-CLAGFLEPGESIEEAVRRETWEETGIEVEV---------ISYVASQPWPLMP 259 (345)
T ss_pred EEcCCCC-Eeeeec---ccCCCCchhh-hhhccCCccccHHHHHHHHHHHHhCceeee---------EeeeecCCCCCCc
Confidence 3334654 666665 5566789885 779999999999999999999999998764 4454433321101
Q ss_pred EE--EEEEE-EEcCCCCccCCCCCceeeEEEEcHHHHHHHHH
Q 016627 305 DV--LFCYD-LKLPEDFVPKNQDGEVESFQLIPVAHVANVIR 343 (386)
Q Consensus 305 Ev--~~vyd-l~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~ 343 (386)
.- +.++- ..+...+... .|.|.++.+|.+.+||++.+.
T Consensus 260 ~SLMIgc~ala~~~~~I~vd-~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 260 QSLMIGCLALAKLNGKISVD-KDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred hHHHHHHHHHHhhCCccccC-cchhhhhcccccHHHHHHHHH
Confidence 00 11110 1111222222 245999999999999999987
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.55 E-value=1.1e-06 Score=81.65 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=82.1
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEec
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDIN 298 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~ 298 (386)
||-+-..+..||+..+.++|.=. +.--+.-=.++||-|++||++..||+||++||+|+...... ....-|.++.
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfR--pP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~----~s~~~f~DPG 148 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFR--PPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM----VSPTVFLDPG 148 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeec--CCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee----ccccEEcCCC
Confidence 45566666679999888876422 11223333588999999999999999999999999854321 1122333331
Q ss_pred CCceeeEEE--EEEEEEcCCCCccC--CCCCceeeEEEEcHHHHHHHHHcC--CCcccChH
Q 016627 299 GFSYKRDVL--FCYDLKLPEDFVPK--NQDGEVESFQLIPVAHVANVIRRT--GFFKPNCS 353 (386)
Q Consensus 299 ~~g~~~Ev~--~vydl~l~~~~~p~--~~dgEVe~f~lvsleEv~~~l~~~--~~Fkpn~~ 353 (386)
-.+ ....+ ..||...|+..+|. ..|+|-.+..+++..++.+.+.+- .-++-+..
T Consensus 149 ltn-~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l~~~~~~id~r 208 (225)
T KOG3041|consen 149 LTN-CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADLDSVGMSIDAR 208 (225)
T ss_pred CCC-CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhhhhcceEeehh
Confidence 111 12333 34455566666554 458999999999999998876551 23444444
No 88
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.51 E-value=7.8e-07 Score=82.51 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=63.6
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccC-----------Cc--eeeeEEEEE
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISN-----------RA--RPVGAVSYM 295 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~-----------~l--~~~G~isy~ 295 (386)
++.+++++-||+. +|+| .++||.++.||++.+||+||+.||+|+..+... .+ ...+.+...
T Consensus 46 ~~~l~vLl~~r~~-----~g~w-alPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~ 119 (186)
T cd03670 46 KPILQFVAIKRPD-----SGEW-AIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGY 119 (186)
T ss_pred CCeeEEEEEEeCC-----CCcC-cCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEecc
Confidence 4456788888843 5899 499999999999999999999999977532211 01 012221111
Q ss_pred EecC----CceeeEEEEEEEEEcCC---CCccCCCCCceeeEEEEcHHHHHH
Q 016627 296 DING----FSYKRDVLFCYDLKLPE---DFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 296 ~~~~----~g~~~Ev~~vydl~l~~---~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
..++ .++..-+.|.|.++-.. ...++. .+|..+++|++++++..
T Consensus 120 ~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a-~dda~~a~W~~v~~l~~ 170 (186)
T cd03670 120 VDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEA-GDDAGSVRWQDIDSKLP 170 (186)
T ss_pred ccCCCCCCcceEEEEEEEEEecCcccccccccCC-CCchheeEEEEcccccc
Confidence 1111 12222334555543111 123332 35799999999998653
No 89
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.39 E-value=8e-06 Score=70.41 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=37.7
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCc
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSI 282 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~ 282 (386)
.+++ +|+.. .++|+|. ++||.++.||++.+||+||+.||+|+....
T Consensus 17 ~lL~-~r~~~--~~~~~w~-lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 17 LLVI-RRGIE--PGRGKLA-LPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEE-EeecC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 4444 55432 3689994 999999999999999999999999998753
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.17 E-value=7.2e-06 Score=72.75 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=63.3
Q ss_pred eEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEE-EEEecCCceeeEEEEE
Q 016627 231 QKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS-YMDINGFSYKRDVLFC 309 (386)
Q Consensus 231 ~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~is-y~~~~~~g~~~Ev~~v 309 (386)
+.++++-.=|.. |-.| +.+.||++++|++.+||+||++||||+...+.+ ..|.+. +.......... .++
T Consensus 23 ~ieVLlvsSs~~----~~~w-i~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~---~~~g~~~~~~~~~~~~~k--~~~ 92 (145)
T KOG2839|consen 23 KIEVLLVSSSKK----PHRW-IVPKGGWEPDESVEEAALRETWEEAGVKGKLGR---LLGGFEDFLSKKHRTKPK--GVM 92 (145)
T ss_pred ceEEEEEecCCC----CCCc-cCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec---cccchhhccChhhccccc--cee
Confidence 355555544332 2234 789999999999999999999999999877643 122211 11111111111 234
Q ss_pred EEEEcCCCCc--cCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 310 YDLKLPEDFV--PKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 310 ydl~l~~~~~--p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
|-+.+...+. |. ...|.-..+|++++|..+.++.
T Consensus 93 ~~l~v~e~le~wp~-~~~~~r~r~W~~ledA~~~~~~ 128 (145)
T KOG2839|consen 93 YVLAVTEELEDWPE-SEHEFREREWLKLEDAIELCQH 128 (145)
T ss_pred ehhhhhhhcccChh-hhcccceeEEeeHHHHHHHHhh
Confidence 5454433332 22 2345888899999999998874
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.96 E-value=0.00014 Score=60.00 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=61.5
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
+++++||.. +..++|+|+ +++|-++.|++..++..||+.||+++. ....+.+...+. .+ .-.+.+|.+
T Consensus 15 ~~ll~kR~~-~gl~~glwe-fP~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~H~ft---h~-~~~~~~~~~ 82 (118)
T cd03431 15 RVLLEKRPE-KGLLAGLWE-FPSVEWEEEADGEEALLSALKKALRLS------LEPLGTVKHTFT---HF-RLTLHVYLA 82 (118)
T ss_pred eEEEEECCC-CCCCCccee-CCCccccCCcCHHHHHHHHHHHHhCcc------cccceeEEEecC---Ce-EEEEEEEEE
Confidence 799999965 578999997 789989999999999999999998751 112334433222 11 123556666
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
.+.... .+..++.|++++++.+
T Consensus 83 ~~~~~~------~~~~~~~W~~~eel~~ 104 (118)
T cd03431 83 RLEGDL------LAPDEGRWVPLEELDE 104 (118)
T ss_pred EEeCCC------cCccccEEccHHHHhh
Confidence 654321 2456779999888765
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.28 E-value=0.00011 Score=72.46 Aligned_cols=124 Identities=18% Similarity=0.255 Sum_probs=74.4
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCce-eeEEEEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSY-KRDVLFCY 310 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~-~~Ev~~vy 310 (386)
.+++|-+=-..-..++|.| -+++|-|..||++.++++||++||+|++.+..+ +...+. .+....+. ..+. | |
T Consensus 127 ~eVlVv~e~d~~~~~~~~w-K~ptG~v~~~e~i~~gavrEvkeetgid~ef~e-Vla~r~---~H~~~~~~~ksd~-f-~ 199 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGW-KLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE-VLAFRR---AHNATFGLIKSDM-F-F 199 (295)
T ss_pred ceeEEEEecccceeecccc-cccceEecccccchhhhhhhhHHHhCcchhhhh-HHHHHh---hhcchhhcccccc-e-e
Confidence 4666643223335678999 478889999999999999999999999766532 111111 01111111 1222 2 3
Q ss_pred EEEc-CCCCccCCCCCceeeEEEEcHHHHHHHHHc-C-CCcccChHHHHHHHHHHc
Q 016627 311 DLKL-PEDFVPKNQDGEVESFQLIPVAHVANVIRR-T-GFFKPNCSLVIIDFLFRH 363 (386)
Q Consensus 311 dl~l-~~~~~p~~~dgEVe~f~lvsleEv~~~l~~-~-~~Fkpn~~lVllDfliRh 363 (386)
.|++ |..+..+.++-|++.++||+++|....... + +.|+ +...|.+..+..+
T Consensus 200 ~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~-~~~~Ic~~~~~~~ 254 (295)
T KOG0648|consen 200 TCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFR-LAAGICLNRLEEF 254 (295)
T ss_pred EEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhH-HHhhhhHHHHhhh
Confidence 4555 345665666899999999999987665442 1 2233 2444555444444
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.45 E-value=0.015 Score=53.08 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=76.6
Q ss_pred EEEEEecCCC--CCCCCCCcccccccCCCCCCC--HH-----HHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCcee
Q 016627 233 FLWIGKRSQV--KPTYPGMLDHLVAGGLPHGIA--CG-----ENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYK 303 (386)
Q Consensus 233 ~LwvqrRS~~--K~t~PG~wD~~vaGgv~aGEs--~~-----eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~ 303 (386)
+++|-.|-.. .+..-|++-.-+|||+..|+. +. -++.||+.||.++.....+.+.++|.|.-....-..++
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 7888877642 223457888889999987653 32 34789999999999877667788887643221111222
Q ss_pred eEEEEEEEEEcC-CCCccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHH
Q 016627 304 RDVLFCYDLKLP-EDFVPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIID 358 (386)
Q Consensus 304 ~Ev~~vydl~l~-~~~~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllD 358 (386)
-. -+|.+++. .++.-+ +.+.-+++|+-++|+.+.. +.|..++++++-+
T Consensus 153 iG--~lf~~~~k~ndvevK--Ekd~~~~kwik~~ele~~y---~~~EtWS~~~~~~ 201 (203)
T COG4112 153 IG--ALFLGRGKFNDVEVK--EKDLFEWKWIKLEELEKFY---GVMETWSKISAAV 201 (203)
T ss_pred EE--EEEEeeccccceeee--ecceeeeeeeeHHHHHHHh---hhhHHHHHHHHHH
Confidence 22 23445442 344333 4567788999999998853 3566777766543
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.15 E-value=0.018 Score=50.52 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccC----Cc-eeeeEE--EEEEecCCceeeEEEEEEEEEcCCC-C
Q 016627 247 PGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISN----RA-RPVGAV--SYMDINGFSYKRDVLFCYDLKLPED-F 318 (386)
Q Consensus 247 PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~----~l-~~~G~i--sy~~~~~~g~~~Ev~~vydl~l~~~-~ 318 (386)
-|-| .++-|-...||+++.+|+||..||+||.++--. .. ++-|.+ .|..+..--+..-..-+|.++-|+. -
T Consensus 35 ~GAW-SIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG 113 (161)
T COG4119 35 DGAW-SIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSGGKVVTAFGVEAELDVADARSNTFELEWPPRSG 113 (161)
T ss_pred CCcc-cccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCCCcEEEEEeeeeeeehhhhhcceeeeecCCCCC
Confidence 3678 477999999999999999999999999875310 01 111221 1111110000001123466666541 1
Q ss_pred ccCCCCCceeeEEEEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCC
Q 016627 319 VPKNQDGEVESFQLIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYI 366 (386)
Q Consensus 319 ~p~~~dgEVe~f~lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i 366 (386)
..+. =-||+..-|++++|....|..+ + .| +||-|..|-.+
T Consensus 114 ~M~~-FPEVDRagWF~l~eAr~Kil~g-Q-Rp-----fldrL~a~~~a 153 (161)
T COG4119 114 KMRK-FPEVDRAGWFPLAEARTKILKG-Q-RP-----FLDRLMAHAVA 153 (161)
T ss_pred cccc-CcccccccceecHHHHhHHhhc-c-ch-----HHHHHHHHhcc
Confidence 1111 2489999999999999888773 2 24 66777666433
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=94.74 E-value=0.059 Score=45.09 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=50.8
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDL 312 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl 312 (386)
++|++||. .|..+.|+|+ ++.--.+ ++...+.+.+.+.+..|+..... ..+|.+..... .+ .-.+.+|.+
T Consensus 10 ~~Ll~kRp-~~gll~GLwe-fP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~~v~H~fS---H~-~~~~~~~~~ 79 (114)
T PF14815_consen 10 RVLLEKRP-EKGLLAGLWE-FPLIESD-EEDDEEELEEWLEEQLGLSIRSV---EPLGTVKHVFS---HR-RWTIHVYEV 79 (114)
T ss_dssp EEEEEE---SSSTTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE----S-SEEEEEE-S---SE-EEEEEEEEE
T ss_pred EEEEEECC-CCChhhcCcc-cCEeCcc-CCCCHHHHHHHHHHHcCCChhhh---eecCcEEEEcc---ce-EEEEEEEEE
Confidence 89999996 5589999997 5554444 44446666667777788765432 24555544332 12 233667778
Q ss_pred EcCCCCccCCCCCceeeEEEEcHHHHHH
Q 016627 313 KLPEDFVPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 313 ~l~~~~~p~~~dgEVe~f~lvsleEv~~ 340 (386)
.++..... +-++..|++.+|+.+
T Consensus 80 ~~~~~~~~-----~~~~~~W~~~~~l~~ 102 (114)
T PF14815_consen 80 EVSADPPA-----EPEEGQWVSLEELDQ 102 (114)
T ss_dssp EEE-SS---------TTEEEEEGGGGGG
T ss_pred EecCCCCC-----CCCCcEEEEHHHHhh
Confidence 77643221 356789999988654
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=92.49 E-value=0.26 Score=47.15 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=32.9
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhC
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAG 277 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaG 277 (386)
+++..-||+.+ |.| .++||.+++||.+-.++.||..||+=
T Consensus 139 le~vavkr~d~-----~~W-AiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 139 LEFVAVKRPDN-----GEW-AIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred eEEEEEecCCC-----Ccc-cCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 34556677665 567 58899999999999999999999984
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=89.95 E-value=1.1 Score=44.78 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=57.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCC--cc---CCCCCc
Q 016627 252 HLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDF--VP---KNQDGE 326 (386)
Q Consensus 252 ~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~--~p---~~~dgE 326 (386)
.+|+|-|+..-+..+-|.||..||.|.+... +.++.+ ..|. ++-|..-....+|-+++.+.- .| ...++|
T Consensus 287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp~-~~~k~v--a~y~--sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E 361 (405)
T KOG4432|consen 287 ELCAGRVDDPFSDPEKAARESVEECGYDLPE-DSFKLV--AKYI--SGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDE 361 (405)
T ss_pred eeecccCCCCcccHHHHHHHHHHHhCCCCCH-HHHhhh--heee--cccCCcCCeeEEEEEEeehhhccCCCCCcccccc
Confidence 4789999988999999999999999997654 222221 1222 122222233455556663211 11 112467
Q ss_pred eeeEEEEcHHHHHHHHHcC
Q 016627 327 VESFQLIPVAHVANVIRRT 345 (386)
Q Consensus 327 Ve~f~lvsleEv~~~l~~~ 345 (386)
..+..-++++++..+.+++
T Consensus 362 ~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 362 DIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred eeeEEEechhhhhHHHhcc
Confidence 7788899999999999984
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=78.99 E-value=4.1 Score=40.82 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=57.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCceeeEEEEEEEEEcCCCCccCCCC---Ccee
Q 016627 252 HLVAGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFSYKRDVLFCYDLKLPEDFVPKNQD---GEVE 328 (386)
Q Consensus 252 ~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g~~~Ev~~vydl~l~~~~~p~~~d---gEVe 328 (386)
.++||-|+...++.|-|..|+.||.|..++. +.++- .++|.. +.+-..--+++|-+++.+.......- .||-
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~-d~l~h--v~~~~~--g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~ 156 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDP-DDLIH--VITFVV--GAHQSGSAQHLYYAEIDESMKISEGGGVITKVY 156 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCCh-hHceE--EEEEEe--ccccCccchheeeeecchhhccccCCceeeEEE
Confidence 5789999999999999999999999998876 33332 234432 21111233567778887655443221 2444
Q ss_pred eEEEEcHHHHHHHHHc
Q 016627 329 SFQLIPVAHVANVIRR 344 (386)
Q Consensus 329 ~f~lvsleEv~~~l~~ 344 (386)
-..-|+.++...++..
T Consensus 157 ~~~~~a~e~ar~~i~t 172 (405)
T KOG4432|consen 157 YPVNVAREIARPAIGT 172 (405)
T ss_pred EeehhhHHHHHHhhcc
Confidence 4556677777777765
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=71.28 E-value=72 Score=30.01 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=54.8
Q ss_pred EEEEEEEEeCCeEEEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCCccCCce---eeeEEEEEE
Q 016627 220 VHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRSISNRAR---PVGAVSYMD 296 (386)
Q Consensus 220 VHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~~~~~l~---~~G~isy~~ 296 (386)
|.-...+...+-.+|++-|...+ . + -++||-+.+||+..+++.|.+.|-+|.......... .+|. +..
T Consensus 46 Ve~Vllvh~h~~PHvLLLq~~~~--~----f-kLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~--WwR 116 (188)
T PF13869_consen 46 VEGVLLVHEHGHPHVLLLQIGNT--F----F-KLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGT--WWR 116 (188)
T ss_dssp EEEEEEEEETTEEEEEEEEETTT--E----E-E-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEE--EEE
T ss_pred EEEEEEEecCCCcEEEEEeccCc--c----c-cCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEE--EeC
Confidence 33333343455567777665433 2 3 488999999999999999999999998764322222 2232 211
Q ss_pred ecC---------Cce--eeEEEEEEEEEcCCC--C-ccCCCCCceeeEEEEcHHHHHH
Q 016627 297 ING---------FSY--KRDVLFCYDLKLPED--F-VPKNQDGEVESFQLIPVAHVAN 340 (386)
Q Consensus 297 ~~~---------~g~--~~Ev~~vydl~l~~~--~-~p~~~dgEVe~f~lvsleEv~~ 340 (386)
+.- ..+ -.|+..+|.+.||+. | +|.| -+ ...+|+=|+-+
T Consensus 117 p~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn--~k---L~AvPLFeLyd 169 (188)
T PF13869_consen 117 PNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKN--MK---LVAVPLFELYD 169 (188)
T ss_dssp SSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETT--SE---EEEEEHHHHTT
T ss_pred CCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCC--Ce---EEeecHhhhhc
Confidence 110 011 238888999999874 2 3442 23 34556555544
No 100
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=69.61 E-value=5.4 Score=46.80 Aligned_cols=63 Identities=24% Similarity=0.410 Sum_probs=48.1
Q ss_pred EEEEEEEEEeCCeEEEEEEecCCCCCCCCCCcc---cccccCCCCCCC-----HHHHHHHHHHhHhCCCCCc
Q 016627 219 GVHMNGYVEKDGQKFLWIGKRSQVKPTYPGMLD---HLVAGGLPHGIA-----CGENIIKECEEEAGIPRSI 282 (386)
Q Consensus 219 gVHlngyv~~dg~~~LwvqrRS~~K~t~PG~wD---~~vaGgv~aGEs-----~~eaaiREl~EEaGL~~~~ 282 (386)
----|||.+.+|-.-+++||++.-++.|.-.+. |+ -|.-+.|-| ..+.++||+.+|+||..+.
T Consensus 225 DeagnGY~Rseg~~avllqrk~~ArRvYAtilnartNT-DGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 225 DEAGNGYCRSEGVVAVLLQRKSLARRVYATILNARTNT-DGFKEQGVTFPSGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred hccCCceeecCceEEEEEehhHHHHHHHHHhhccccCC-CchhhcCccCCCcHHHHHHHHHHHHhcCCCccc
Confidence 345689998888888999999999888875542 22 355555544 4788999999999998764
No 101
>PF14443 DBC1: DBC1
Probab=62.48 E-value=35 Score=30.10 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=48.9
Q ss_pred EEEEEEecCCCCCCCCCCcccccccCCC-C-CCCHHHHHHHHHHhHhCCCCCccCCceeeeEEEEEEecCCc--eeeEEE
Q 016627 232 KFLWIGKRSQVKPTYPGMLDHLVAGGLP-H-GIACGENIIKECEEEAGIPRSISNRARPVGAVSYMDINGFS--YKRDVL 307 (386)
Q Consensus 232 ~~LwvqrRS~~K~t~PG~wD~~vaGgv~-a-GEs~~eaaiREl~EEaGL~~~~~~~l~~~G~isy~~~~~~g--~~~Ev~ 307 (386)
+++++.+|.+.----.|-||-.-=|+=+ . ......+|+|=++|=+||+.+...+.-..-.+.|......+ -..|+.
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~Eiv 87 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIV 87 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEE
Confidence 4678888866433455888766444433 3 24678999999999999998765543333356666543222 234554
Q ss_pred EEE
Q 016627 308 FCY 310 (386)
Q Consensus 308 ~vy 310 (386)
.+|
T Consensus 88 VlF 90 (126)
T PF14443_consen 88 VLF 90 (126)
T ss_pred EEE
Confidence 444
No 102
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=32.15 E-value=37 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=12.2
Q ss_pred ccCCCCCCCHHHHHHHHHHhHh
Q 016627 255 AGGLPHGIACGENIIKECEEEA 276 (386)
Q Consensus 255 aGgv~aGEs~~eaaiREl~EEa 276 (386)
||-..+|--|...+.||+-||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 5556678888999999999996
No 103
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=27.60 E-value=33 Score=18.69 Aligned_cols=13 Identities=46% Similarity=1.032 Sum_probs=10.3
Q ss_pred ceeeEeeeccccc
Q 016627 8 LTQTIRLSFPSLH 20 (386)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (386)
.|.+.|+.||.|.
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 3678999999873
No 104
>PRK10880 adenine DNA glycosylase; Provisional
Probab=26.21 E-value=6.7e+02 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHHHhHhCCCC
Q 016627 233 FLWIGKRSQVKPTYPGMLDHLVAGGLPHGIACGENIIKECEEEAGIPR 280 (386)
Q Consensus 233 ~LwvqrRS~~K~t~PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~ 280 (386)
+++++||... ..+.|+|+ ++. ++ + +...+|..|+.|+..
T Consensus 243 ~~~l~~r~~~-gl~~gl~~-fP~--~~---~--~~~~~~~~~~~~~~~ 281 (350)
T PRK10880 243 EVWLEQRPPS-GLWGGLFC-FPQ--FA---D--EEELRQWLAQRGIAA 281 (350)
T ss_pred EEEEEECCcc-Chhhcccc-CCC--Cc---c--hhhHHHHHHhcCCch
Confidence 7999999754 68999997 553 22 1 123466668888753
No 105
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=3.2e+02 Score=27.04 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCeEEEEEEecCCCCCCCCCCcccccccCC-CCCCCHHHHHHHHHHhHhCCCCCcc-CCceeeeEEEEEEecCCce----
Q 016627 229 DGQKFLWIGKRSQVKPTYPGMLDHLVAGGL-PHGIACGENIIKECEEEAGIPRSIS-NRARPVGAVSYMDINGFSY---- 302 (386)
Q Consensus 229 dg~~~LwvqrRS~~K~t~PG~wD~~vaGgv-~aGEs~~eaaiREl~EEaGL~~~~~-~~l~~~G~isy~~~~~~g~---- 302 (386)
|..+.|+|+ |-..|.. .| +++-+-. ..|++...+|.|++.+=.|=..... ....|+|...+.++.....
T Consensus 137 dr~LyLLV~-~k~g~~s---~w-~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~ 211 (263)
T KOG4548|consen 137 DRKLYLLVK-RKFGKSS---VW-IFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPV 211 (263)
T ss_pred cceEEEEEe-eccCccc---ee-eCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccc
Confidence 334445555 5444433 34 5666666 7899999999999999888543321 1124556333322211110
Q ss_pred eeEEEEEEEEEcCCCCccCCCCCceeeEEEEcHHHHHHHHHc
Q 016627 303 KRDVLFCYDLKLPEDFVPKNQDGEVESFQLIPVAHVANVIRR 344 (386)
Q Consensus 303 ~~Ev~~vydl~l~~~~~p~~~dgEVe~f~lvsleEv~~~l~~ 344 (386)
..-+.+.+-.-++.+ .+++ +-+++|.|+|-+|+.+-+..
T Consensus 212 ~sk~ff~k~~lv~~~-~~kn--~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 212 SSKVFFFKASLVANS-NQKN--QNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred cceeEEeeeeecccc-chhc--ccccceEEechHHHhhhcch
Confidence 011222222223332 2333 45788999999998887653
No 106
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=24.09 E-value=34 Score=33.96 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=25.1
Q ss_pred CcccccccCCC-----------CCCCHHHHHHHHHHhHhCCCCCc
Q 016627 249 MLDHLVAGGLP-----------HGIACGENIIKECEEEAGIPRSI 282 (386)
Q Consensus 249 ~wD~~vaGgv~-----------aGEs~~eaaiREl~EEaGL~~~~ 282 (386)
.+|.-||||+. .|-++-+.++.++.|-+-.++..
T Consensus 93 ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~ 137 (282)
T KOG1270|consen 93 ILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL 137 (282)
T ss_pred EEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh
Confidence 59999999985 46666777888888876655443
No 107
>PLN03090 auxin-responsive family protein; Provisional
Probab=22.74 E-value=3.3e+02 Score=23.23 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCCCCcccceeeeccCCCCceeEEEEcccccccCeeeeEEEEEEEEEeCCeEEEEEEecCCCCCCC
Q 016627 167 TRVVGEVIKCLGEEDLIPGIRNELYPVTSTFGSPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQVKPTY 246 (386)
Q Consensus 167 t~~l~~v~~~lr~~g~l~gwr~El~dVyd~~g~~~l~~ieRaa~~~~Gi~~~gVHlngyv~~dg~~~LwvqrRS~~K~t~ 246 (386)
...+.+++++|+..|...+|..+..+ . .++++ |+.+|+- ++..++.|+-.-.
T Consensus 12 ~~~~kq~l~r~~s~~~~~~~~~~~~~--------~--~vpkG------------~~aVyVG-~~~~RfvVp~~~L----- 63 (104)
T PLN03090 12 TAMLKQILKRCSSLGKKQGYDEDGLP--------L--DVPKG------------HFPVYVG-ENRSRYIVPISFL----- 63 (104)
T ss_pred HHHHHHHHHHHHHhcccCCcccccCC--------C--CCCCC------------cEEEEEC-CCCEEEEEEHHHc-----
Confidence 35568889999888776666433111 0 12222 6667873 3334565553322
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHhHhCCCCC
Q 016627 247 PGMLDHLVAGGLPHGIACGENIIKECEEEAGIPRS 281 (386)
Q Consensus 247 PG~wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~~ 281 (386)
+......+.+.+.||-|.+-+
T Consensus 64 --------------~hP~F~~LL~~aeeEfGf~~~ 84 (104)
T PLN03090 64 --------------THPEFQSLLQQAEEEFGFDHD 84 (104)
T ss_pred --------------CCHHHHHHHHHHHHHhCCCCC
Confidence 345678899999999998643
No 108
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=22.67 E-value=85 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEcHHHHHHHHHcCCCcccChHHHHHHHHHHcCCCC
Q 016627 332 LIPVAHVANVIRRTGFFKPNCSLVIIDFLFRHGYIC 367 (386)
Q Consensus 332 lvsleEv~~~l~~~~~Fkpn~~lVllDfliRhG~i~ 367 (386)
.++.+++.+.+.. .. ++...-+.|||.++|+|.
T Consensus 53 ~lt~~~~~~~i~~-~d--~~~~~ri~~FL~~~G~IN 85 (86)
T PF04433_consen 53 YLTKTDARKLIKG-ID--VNKIRRIYDFLERWGLIN 85 (86)
T ss_dssp ---HHHHHHHTTS-SS--HHHHHHHHHHHHHTTSSS
T ss_pred cccHHHHHHHccc-cC--HHHHHHHHHHHHHcCccC
Confidence 4678899888872 12 456777899999999985
No 109
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=20.74 E-value=38 Score=32.20 Aligned_cols=31 Identities=35% Similarity=0.311 Sum_probs=22.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHhHhCCCC
Q 016627 250 LDHLVAGGLPHGIACGENIIKECEEEAGIPR 280 (386)
Q Consensus 250 wD~~vaGgv~aGEs~~eaaiREl~EEaGL~~ 280 (386)
|+...+||-...-....+|+||+.||.||-.
T Consensus 11 p~~~~~~~~~~~i~lrltAire~feE~gill 41 (209)
T KOG3904|consen 11 PEILSGGGTICRIALRLTAIRETFEEVGILL 41 (209)
T ss_pred hhhhccCCceeeeeeccHHHHHHHhhhheeE
Confidence 4445555544447788999999999999853
Done!