Query 016628
Match_columns 386
No_of_seqs 142 out of 1389
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 8.3E-54 1.8E-58 395.6 22.6 349 24-386 44-406 (449)
2 PTZ00206 amino acid transporte 100.0 1.9E-52 4E-57 404.8 18.1 353 25-386 58-421 (467)
3 KOG1303 Amino acid transporter 100.0 5.9E-51 1.3E-55 383.5 21.5 363 14-386 25-393 (437)
4 PF01490 Aa_trans: Transmembra 100.0 3E-51 6.4E-56 394.4 1.4 356 25-386 1-366 (409)
5 PLN03074 auxin influx permease 100.0 1.4E-44 3E-49 348.3 15.7 341 24-386 43-395 (473)
6 KOG1305 Amino acid transporter 100.0 3.5E-41 7.5E-46 315.9 22.9 352 23-386 2-367 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.4E-43 5.2E-48 307.9 6.1 349 21-386 111-474 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.4E-31 2.9E-36 254.6 21.9 353 22-384 4-373 (415)
9 TIGR00837 araaP aromatic amino 99.9 1.4E-23 3E-28 200.0 15.4 336 32-386 2-351 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 6E-23 1.3E-27 194.2 19.3 342 25-385 1-356 (394)
11 PRK10483 tryptophan permease; 99.9 6.9E-23 1.5E-27 192.0 18.0 345 22-385 6-364 (414)
12 PRK09664 tryptophan permease T 99.9 1.3E-22 2.8E-27 189.9 17.8 343 25-385 7-365 (415)
13 PRK15132 tyrosine transporter 99.9 1.4E-21 3.1E-26 184.0 17.1 336 28-385 4-353 (403)
14 PRK13629 threonine/serine tran 99.9 3.3E-20 7.3E-25 173.8 18.1 349 33-385 25-406 (443)
15 TIGR00814 stp serine transport 99.8 3.4E-20 7.4E-25 175.1 16.7 348 31-385 7-370 (397)
16 PRK10655 potE putrescine trans 99.6 2.3E-13 4.9E-18 132.2 21.3 240 23-278 4-245 (438)
17 TIGR00906 2A0303 cationic amin 99.6 3E-13 6.4E-18 134.4 21.8 300 21-330 24-344 (557)
18 PRK10249 phenylalanine transpo 99.6 3.4E-13 7.3E-18 131.5 21.5 292 21-330 17-323 (458)
19 PRK10435 cadB lysine/cadaverin 99.6 3.2E-13 6.9E-18 130.9 19.8 242 22-280 2-245 (435)
20 KOG1287 Amino acid transporter 99.6 1.4E-13 3.1E-18 129.6 16.1 336 21-372 8-364 (479)
21 PRK11049 D-alanine/D-serine/gl 99.5 6E-13 1.3E-17 130.2 21.1 242 20-278 15-267 (469)
22 PRK15049 L-asparagine permease 99.5 1E-12 2.2E-17 129.3 22.4 314 1-331 1-335 (499)
23 TIGR01773 GABAperm gamma-amino 99.5 1.1E-12 2.3E-17 128.0 22.4 291 21-330 8-316 (452)
24 PRK10644 arginine:agmatin anti 99.5 2.8E-13 6.1E-18 131.8 16.9 241 22-278 5-247 (445)
25 TIGR00909 2A0306 amino acid tr 99.5 8.9E-13 1.9E-17 127.8 20.0 292 24-330 2-309 (429)
26 PRK11387 S-methylmethionine tr 99.5 1.3E-12 2.9E-17 127.9 21.0 292 22-330 11-320 (471)
27 COG1113 AnsP Gamma-aminobutyra 99.5 1.3E-13 2.8E-18 127.9 12.3 332 22-372 10-365 (462)
28 PRK10746 putative transport pr 99.5 2.2E-12 4.8E-17 125.7 21.2 292 22-331 7-315 (461)
29 PRK11021 putative transporter; 99.5 4E-12 8.6E-17 122.4 22.1 230 27-276 1-231 (410)
30 TIGR00905 2A0302 transporter, 99.5 2E-12 4.3E-17 126.7 20.0 245 22-279 4-255 (473)
31 PRK10238 aromatic amino acid t 99.5 5.7E-12 1.2E-16 122.8 21.3 292 21-330 8-314 (456)
32 TIGR00912 2A0309 spore germina 99.4 2E-12 4.3E-17 122.3 15.5 287 25-333 1-299 (359)
33 PRK11357 frlA putative fructos 99.4 6.2E-12 1.3E-16 122.4 19.2 239 22-277 5-250 (445)
34 PRK10836 lysine transporter; P 99.4 1.6E-11 3.4E-16 120.9 21.6 242 21-278 11-261 (489)
35 PRK10580 proY putative proline 99.4 2.9E-11 6.3E-16 118.0 22.4 238 22-276 6-253 (457)
36 TIGR00930 2a30 K-Cl cotranspor 99.4 1.4E-11 3E-16 128.2 20.1 248 21-277 72-335 (953)
37 TIGR00911 2A0308 L-type amino 99.4 1.5E-11 3.4E-16 121.4 18.0 247 21-278 38-291 (501)
38 COG0833 LysP Amino acid transp 99.4 3.2E-11 6.9E-16 114.5 19.1 298 22-333 41-359 (541)
39 TIGR00908 2A0305 ethanolamine 99.4 5.9E-11 1.3E-15 115.5 20.5 238 22-275 4-244 (442)
40 TIGR03810 arg_ornith_anti argi 99.4 5.1E-11 1.1E-15 116.7 19.7 293 25-330 1-309 (468)
41 TIGR00913 2A0310 amino acid pe 99.4 9.9E-11 2.1E-15 115.1 21.1 238 24-276 1-251 (478)
42 PRK10197 gamma-aminobutyrate t 99.3 1.1E-10 2.5E-15 113.4 19.8 278 36-331 3-297 (446)
43 KOG1286 Amino acid transporter 99.3 4.1E-11 8.8E-16 117.3 15.4 305 21-332 26-353 (554)
44 PF03845 Spore_permease: Spore 99.3 1.2E-10 2.7E-15 108.2 17.2 284 26-333 1-295 (320)
45 PF13520 AA_permease_2: Amino 99.2 3.7E-10 8.1E-15 109.4 15.7 288 27-332 1-305 (426)
46 COG0531 PotE Amino acid transp 99.1 1.9E-09 4E-14 105.7 16.8 296 22-329 9-316 (466)
47 TIGR03428 ureacarb_perm permea 99.0 8.9E-08 1.9E-12 94.0 24.0 249 21-278 9-269 (475)
48 TIGR00907 2A0304 amino acid pe 98.9 4.5E-07 9.8E-12 89.3 24.2 243 22-272 9-267 (482)
49 PF00324 AA_permease: Amino ac 98.9 2.7E-09 5.9E-14 104.9 8.2 285 34-330 4-319 (478)
50 KOG3832 Predicted amino acid t 98.9 1.7E-08 3.7E-13 83.5 10.1 209 28-242 13-298 (319)
51 PRK15238 inner membrane transp 98.8 4.9E-07 1.1E-11 89.3 20.4 238 23-277 5-266 (496)
52 TIGR03813 put_Glu_GABA_T putat 98.8 6.7E-07 1.5E-11 87.9 18.7 243 26-282 2-254 (474)
53 TIGR00910 2A0307_GadC glutamat 98.7 1.7E-06 3.8E-11 85.4 18.9 235 23-275 2-247 (507)
54 TIGR00800 ncs1 NCS1 nucleoside 98.5 2E-05 4.4E-10 76.6 20.9 297 23-332 10-329 (442)
55 PRK11375 allantoin permease; P 98.2 0.00084 1.8E-08 65.9 23.2 298 22-332 22-343 (484)
56 COG3949 Uncharacterized membra 98.1 0.00038 8.2E-09 62.8 17.8 133 31-178 7-144 (349)
57 TIGR02119 panF sodium/pantothe 98.1 0.00063 1.4E-08 66.9 20.7 157 22-188 37-196 (471)
58 PRK09442 panF sodium/panthothe 98.0 0.00088 1.9E-08 66.0 20.7 154 22-186 38-195 (483)
59 TIGR00813 sss transporter, SSS 98.0 0.00022 4.7E-09 68.7 16.0 150 24-185 2-152 (407)
60 PRK12488 acetate permease; Pro 98.0 0.00052 1.1E-08 68.6 17.7 151 23-186 65-217 (549)
61 COG0591 PutP Na+/proline sympo 97.9 0.0015 3.3E-08 64.3 20.2 154 23-185 36-191 (493)
62 COG1457 CodB Purine-cytosine p 97.8 0.0024 5.3E-08 60.9 18.6 254 94-375 84-343 (442)
63 TIGR02711 symport_actP cation/ 97.8 0.0035 7.7E-08 62.7 20.7 150 23-185 65-216 (549)
64 PRK09395 actP acetate permease 97.7 0.0074 1.6E-07 60.5 20.9 151 23-185 67-218 (551)
65 KOG1289 Amino acid transporter 97.6 0.0028 6E-08 61.2 15.7 254 22-283 45-313 (550)
66 TIGR02358 thia_cytX probable h 97.5 0.01 2.2E-07 56.7 18.7 288 55-376 26-316 (386)
67 PF00474 SSF: Sodium:solute sy 97.5 5.5E-05 1.2E-09 72.9 2.6 150 24-185 5-156 (406)
68 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.013 2.8E-07 57.8 19.0 153 23-185 34-192 (487)
69 PRK10484 putative transporter; 97.4 0.0041 9E-08 61.9 14.7 158 22-186 35-198 (523)
70 TIGR03648 Na_symport_lg probab 97.4 0.017 3.7E-07 58.0 18.8 152 22-185 29-181 (552)
71 PF02554 CstA: Carbon starvati 97.2 0.0033 7.1E-08 58.0 9.8 150 22-183 47-197 (376)
72 TIGR00796 livcs branched-chain 97.1 0.051 1.1E-06 51.4 18.0 69 35-111 3-74 (378)
73 PRK15419 proline:sodium sympor 97.1 0.047 1E-06 54.1 18.0 154 22-185 37-196 (502)
74 COG1953 FUI1 Cytosine/uracil/t 97.0 0.25 5.4E-06 47.7 20.7 235 90-333 102-358 (497)
75 PRK11017 codB cytosine permeas 96.9 0.061 1.3E-06 51.7 16.4 206 54-283 38-244 (404)
76 TIGR00835 agcS amino acid carr 96.6 0.0086 1.9E-07 57.2 8.2 147 24-184 44-200 (425)
77 KOG2083 Na+/K+ symporter [Inor 96.6 0.0046 1E-07 60.0 6.1 236 22-275 25-276 (643)
78 PF02133 Transp_cyt_pur: Perme 96.5 0.0037 8.1E-08 60.9 5.5 113 23-140 5-119 (440)
79 COG4147 DhlC Predicted symport 96.1 0.54 1.2E-05 45.0 16.8 175 90-279 103-293 (529)
80 PRK15015 carbon starvation pro 96.1 0.026 5.6E-07 55.9 8.4 147 26-184 82-230 (701)
81 COG0733 Na+-dependent transpor 96.0 0.48 1E-05 45.2 15.8 212 25-242 7-239 (439)
82 PF01566 Nramp: Natural resist 95.2 0.98 2.1E-05 42.7 15.5 116 54-183 10-127 (358)
83 KOG1288 Amino acid transporter 94.8 0.38 8.3E-06 48.0 11.2 56 217-277 294-349 (945)
84 COG1966 CstA Carbon starvation 94.5 0.16 3.4E-06 49.4 8.0 99 23-125 48-147 (575)
85 PF01235 Na_Ala_symp: Sodium:a 94.4 0.45 9.7E-06 45.5 10.6 85 21-106 13-103 (416)
86 PF00209 SNF: Sodium:neurotran 94.2 4.1 8.8E-05 40.7 17.7 30 28-57 6-36 (523)
87 COG1914 MntH Mn2+ and Fe2+ tra 92.6 1.9 4.2E-05 41.3 11.8 143 24-181 14-158 (416)
88 TIGR00796 livcs branched-chain 90.2 0.78 1.7E-05 43.5 6.4 78 91-177 255-332 (378)
89 PF05525 Branch_AA_trans: Bran 89.8 0.98 2.1E-05 43.4 6.7 74 92-174 262-335 (427)
90 PF05525 Branch_AA_trans: Bran 88.5 25 0.00054 34.0 17.8 70 28-106 4-77 (427)
91 KOG2349 Na+:iodide/myo-inosito 85.0 20 0.00043 35.9 12.7 240 23-283 43-303 (585)
92 KOG2082 K+/Cl- cotransporter K 83.3 2.6 5.7E-05 42.8 5.8 160 24-187 112-287 (1075)
93 COG1115 AlsT Na+/alanine sympo 83.0 47 0.001 32.1 18.7 158 22-189 58-223 (452)
94 COG4145 PanF Na+/panthothenate 82.1 46 0.001 31.4 16.7 247 24-286 38-301 (473)
95 PRK15433 branched-chain amino 80.4 59 0.0013 31.6 18.4 70 28-106 9-82 (439)
96 PHA02764 hypothetical protein; 79.7 34 0.00074 31.5 11.0 89 22-115 9-100 (399)
97 PRK00701 manganese transport p 79.4 64 0.0014 31.4 18.4 27 92-119 95-121 (439)
98 COG1114 BrnQ Branched-chain am 78.7 5.2 0.00011 38.0 5.9 77 92-177 264-340 (431)
99 PF02028 BCCT: BCCT family tra 77.1 80 0.0017 31.2 18.7 156 22-186 70-256 (485)
100 PRK15433 branched-chain amino 62.6 17 0.00038 35.1 5.6 64 94-166 268-331 (439)
101 KOG3660 Sodium-neurotransmitte 62.5 1.9E+02 0.0041 29.7 13.9 53 28-80 39-96 (629)
102 COG1292 BetT Choline-glycine b 53.9 67 0.0014 31.9 8.0 27 23-49 84-110 (537)
103 PLN02680 carbon-monoxide oxyge 52.1 1.7E+02 0.0036 25.8 10.5 66 255-322 78-143 (232)
104 KOG1289 Amino acid transporter 51.5 1.5E+02 0.0033 29.6 9.9 46 92-138 326-371 (550)
105 COG0814 SdaC Amino acid permea 51.5 48 0.001 32.1 6.7 138 247-384 215-366 (415)
106 PRK09928 choline transport pro 45.4 76 0.0016 32.7 7.2 27 23-49 89-115 (679)
107 PRK03356 L-carnitine/gamma-but 38.2 3E+02 0.0064 27.5 9.9 27 23-49 82-108 (504)
108 TIGR00842 bcct choline/carniti 35.2 1.2E+02 0.0027 29.6 6.7 27 23-49 33-59 (453)
109 PRK13183 psbN photosystem II r 34.7 46 0.001 20.8 2.4 28 258-285 7-34 (46)
110 PF02468 PsbN: Photosystem II 33.9 41 0.00089 20.8 2.0 26 260-285 6-31 (43)
111 KOG1619 Cytochrome b [Energy p 33.6 3.4E+02 0.0073 24.0 8.9 71 250-322 82-152 (245)
112 CHL00020 psbN photosystem II p 31.7 46 0.001 20.5 2.0 28 258-285 4-31 (43)
113 KOG1291 Mn2+ and Fe2+ transpor 30.6 5.2E+02 0.011 25.4 9.7 31 339-369 355-387 (503)
114 PF04835 Pox_A9: A9 protein co 24.9 1E+02 0.0022 20.0 2.8 29 258-286 24-52 (54)
115 cd08763 Cyt_b561_CYB561 Verteb 24.2 1.8E+02 0.0039 23.4 4.9 63 257-322 41-104 (143)
116 cd08766 Cyt_b561_ACYB-1_like P 23.8 1.8E+02 0.004 23.4 4.8 64 257-322 41-104 (144)
117 PF13491 DUF4117: Domain of un 23.5 4.1E+02 0.0088 21.6 8.1 105 257-364 5-114 (171)
118 cd08764 Cyt_b561_CG1275_like N 23.1 2.7E+02 0.0058 24.2 6.0 66 257-322 58-123 (214)
119 COG1114 BrnQ Branched-chain am 20.4 7.9E+02 0.017 23.8 19.2 69 29-106 7-79 (431)
120 TIGR01197 nramp NRAMP (natural 20.2 7.7E+02 0.017 23.6 19.9 24 92-116 65-88 (390)
121 KOG3659 Sodium-neurotransmitte 20.2 9.4E+02 0.02 24.6 16.1 103 28-140 83-190 (629)
122 KOG2466 Uridine permease/thiam 20.1 8.7E+02 0.019 24.2 15.9 111 22-141 51-167 (572)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-54 Score=395.63 Aligned_cols=349 Identities=20% Similarity=0.231 Sum_probs=307.9
Q ss_pred cccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhcccc---CCCcccCCHHHHHHHh
Q 016628 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC---VPGVRFDRYIDLGRHA 100 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~l~~~~ 100 (386)
++..|..++..|+.++++|+|+|++|++|+++|++.|.+...+.+.++.||++.+.+|.+. ..+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 5668999999999999999999999999999999999999999999999999999998542 2223346888876655
Q ss_pred h----------CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCcc
Q 016628 101 F----------GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (386)
Q Consensus 101 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 170 (386)
+ |+ ++|.+++.++.++|+|.|++|+++++++++++.+.. .....+.+.|+.+..+.+++++++|++|
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 4 54 678899999999999999999999999999999942 2346788999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCc
Q 016628 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (386)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p 250 (386)
.++.+|.+++++.++...++.++.+.... +.++.+...++.++...+|+.+|||+|+.++.|++++ ||+|
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~----Mk~P 270 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS----MKKP 270 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhc----ccCh
Confidence 99999999999888766666665544322 1112233456889999999999999999999999999 8999
Q ss_pred cccchh-hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628 251 SKILMW-KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (386)
Q Consensus 251 ~~~~~~-~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~ 329 (386)
+++.-+ +++..++.+++++|..+|.+||++||+++++.++.|+|+ +++.+.+++++++.++++||+|++|..+++|+.
T Consensus 271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence 987643 677899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHhhcCCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
+.++.+.+++++..+..|..++++++++|..+||++.+++++||++++.+++++|++
T Consensus 350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~l 406 (449)
T KOG1304|consen 350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPL 406 (449)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHH
Confidence 887766666789999999999999999999999999999999999999999999984
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.9e-52 Score=404.77 Aligned_cols=353 Identities=18% Similarity=0.203 Sum_probs=289.8
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
++.+..++++|++|+++|+|+|++|++|++.||+.|++++++++.++.|+.+++.++.++. +..+|+|++++++||
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~---~~~sY~~la~~~~G~- 133 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT---NIRTYEGVARVLLGP- 133 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHhCH-
Confidence 3456689999999999999999999999999999999999999999999999999987642 234999999999997
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCC---c-ccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC---K-PLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~---~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
+|++++++++.+.++|+|++|+++.+|.++.+++...... . ..++..+.+++.++++|++++|+++.++++|.+++
T Consensus 134 ~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 134 WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 6899999999999999999999999999998886432110 0 11223344557778899999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccccCCcc---cccc---CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 181 VMSLSYSTIAWAGSLSHGRIENVS---YAYK---HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
.+.+...+.+++....++.+++.+ .+.+ +........+.+.++++++|||.||.+++++++| ||||++++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~----M~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD----MTNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh----hcccchhH
Confidence 876655554444444443322211 1110 1111122346889999999999999999999999 88888888
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhcc-CCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhh
Q 016628 255 MWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL-KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 333 (386)
+.++...++.++.++|.++|++||+.||+++++|++.|+ |.++....++++.+.+.++.+||++.+|+|+.+++.+..+
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 889999999999999999999999999999999999999 4567778888999999999999999999999999987543
Q ss_pred cCCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 334 MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
.+ +.+.+++...+..+++.++++|+.+||++.+++++||++++.++|++|++
T Consensus 370 ~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~l 421 (467)
T PTZ00206 370 AR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPAL 421 (467)
T ss_pred cc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHH
Confidence 22 23446676777778888999999999999999999999999999999974
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-51 Score=383.45 Aligned_cols=363 Identities=42% Similarity=0.731 Sum_probs=317.9
Q ss_pred cCCCcccCCCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhcccc---CCCccc
Q 016628 14 SNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC---VPGVRF 90 (386)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~---~~~~~~ 90 (386)
+++++++..++|+.|++++.++.++.++|.|+|+|||++++.||..|++++++.++++.||..+|.+|.+. .+++|+
T Consensus 25 ~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~ 104 (437)
T KOG1303|consen 25 DVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRR 104 (437)
T ss_pred ccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccC
Confidence 44456666778999999999999999999999999999999999999999999999999999999998653 455667
Q ss_pred CCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCcc
Q 016628 91 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (386)
Q Consensus 91 ~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 170 (386)
++|+|+++++||++ +++++.+++.+.++|+|+.|++..+|++..+.+.........+.+.|+++++++.+|++++++++
T Consensus 105 ~~Y~dl~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred CChHHHHHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc
Confidence 89999999999986 59999999999999999999999999999999998744324557899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccccCC-ccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCC
Q 016628 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN-VSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEK 249 (386)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~ 249 (386)
.+++.|..+.++++.+..+++..+..++.... .+.+.+. .......+++++++.|+|.||.++|+++++ ||+
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~---~~~~~~~f~a~g~iaFaf~gH~v~peIq~t----Mk~ 256 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD---LGTIPTVFTALGIIAFAYGGHAVLPEIQHT----MKS 256 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc---CCCCcchhhhhhheeeeecCCeeeeehHhh----cCC
Confidence 99999999999998888888877766654331 1112111 111111179999999999999999999999 899
Q ss_pred ccccchhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628 250 PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (386)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~ 329 (386)
|++++ |++..++.+++.+|+..++.||++|||++++|++.|+.++.|....+++++.++.+.+|.....|..+.+|++
T Consensus 257 p~~f~--~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~ 334 (437)
T KOG1303|consen 257 PPKFK--KALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKL 334 (437)
T ss_pred chhhh--hHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence 98854 9999999999999999999999999999999999999656899999999999999999999999999999999
Q ss_pred HHhhcC-CC-CCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 330 MIKRMN-FP-PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 330 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
...+.+ .+ +....|.+.|..+++.+.++|+.+|.|+.+.+++|++...++.+++|++
T Consensus 335 ~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~ 393 (437)
T KOG1303|consen 335 IGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCL 393 (437)
T ss_pred hccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 986543 12 3567999999999999999999999999999999999999999999974
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3e-51 Score=394.38 Aligned_cols=356 Identities=28% Similarity=0.463 Sum_probs=307.5
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCC-CcccCCHHHHHHHhhCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVP-GVRFDRYIDLGRHAFGP 103 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~-~~~~~~y~~l~~~~~G~ 103 (386)
||.|+++++++++|+++|+|+|++|++|++.||+.|++++++++.++.++.+++.|+++..+ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999987543 34567999999999998
Q ss_pred CccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHH
Q 016628 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS 183 (386)
Q Consensus 104 ~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 183 (386)
+ +++++++++.+.++|.+++|++..+|.++++++...+. ...++..+.++..++++|+++.|+++.+++.|.++.++.
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 5 68999999999999999999999999999998875432 235667788889999999999999999999999999976
Q ss_pred HHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccc-cchhhhhhHH
Q 016628 184 LSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGA 262 (386)
Q Consensus 184 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~-~~~~~~~~~~ 262 (386)
+..+.+...........++.+.+.+......++.+++.++++..|+|.+|.++|++++| ||+|++ +++.++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSE----MKDPSKFKKMKKVLSIS 234 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeee----ccCCccccccceeeeeh
Confidence 65322222222222222222222222233457789999999999999999999999999 888888 5677899999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhh--------c
Q 016628 263 YFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------M 334 (386)
Q Consensus 263 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~ 334 (386)
+.+++++|..+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++.+.++ .
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~ 314 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK 314 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc
Confidence 99999999999999999999999999999999888888899999999999999999999999999999753 2
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 335 NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
+.+.++++|...|..+++.++++|+.+||++.+++++|+++++.++|++|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l 366 (409)
T PF01490_consen 315 NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPAL 366 (409)
T ss_pred cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHH
Confidence 3344678999999999999999999999999999999999999999999974
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.4e-44 Score=348.25 Aligned_cols=341 Identities=21% Similarity=0.306 Sum_probs=281.2
Q ss_pred cccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhcccc----CCCc----c--cCCH
Q 016628 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC----VPGV----R--FDRY 93 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~----~~~~----~--~~~y 93 (386)
+++.+..++.+++++..+|.|+|+||++|++.||++|++.+++.++++.||.+++.+++.+ .+.+ + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999986421 1211 1 1367
Q ss_pred HHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchh
Q 016628 94 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 173 (386)
Q Consensus 94 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 173 (386)
.|+++..+||+ ++.+..+...+.+++.|+.|++..++.+..+. ...+.+.|++++.++++|++++|++++++
T Consensus 123 ~e~~~~~~G~~-~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 123 FEVLDGLLGPY-WKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHHhcChh-HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence 88999999985 45667777788889989999887776655441 24677889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcccc
Q 016628 174 SVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKI 253 (386)
Q Consensus 174 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~ 253 (386)
++|.++..+++.....++.....++..++.+++ .+.++..++.++++++|+|+||..+|++++| ||||+++
T Consensus 195 ~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~----M~~P~~F 265 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHh----ccChhcc
Confidence 999999987665433333334444433333221 2345667778888999999999999999999 8999998
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhcccCCCCCh--hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 254 LMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
+ +....+...++.+|+.+|+.||+.|||++++ +.+.|+|++. ...++++++.++++.+||++++|..+.+|+..+
T Consensus 266 ~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~ 342 (473)
T PLN03074 266 K--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIG 342 (473)
T ss_pred c--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 7 8888888889999999999999999999764 5677787654 456789999999999999999999999999875
Q ss_pred hhcCCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
.+ ..++...|..+|..+++.++++|+.+|+|+.+++++||++++.+++++|++
T Consensus 343 ~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l 395 (473)
T PLN03074 343 VH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSL 395 (473)
T ss_pred cc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334567899999999999999999999999999999999999999999974
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=315.87 Aligned_cols=352 Identities=20% Similarity=0.309 Sum_probs=294.2
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
.+++.|.+.+++++.|+++|+|++++|++|++.|.+.|++++.++++++.++.+++.++.++.++ + +|+++++..+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C--CHHHHHHHHcC
Confidence 35677999999999999999999999999999999999999999999999999999999765433 3 99999999999
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCc----ccchhH-HHHHHHHHHHhhhcCCCccchhhHHH
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK----PLRQTF-WILIFGSLHFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~----~~~~~~-~~~i~~~~~~pl~~~~~l~~l~~~s~ 177 (386)
+ .|+....+.......| |++|++.++|.++.+.......++ ..++.. |.+....+++|+++.|+++++++.|.
T Consensus 79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7 6777677666666666 699999999999977766542222 123333 57778888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccc-cCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchh
Q 016628 178 AAAVMSLSYSTIAWAGSLSHGR-IENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (386)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (386)
++.++....++++++..+.... .+...+. ......+.+++.++++++|+|.||+++.++++| ||||+++++.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E----l~~~s~~~i~ 229 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE----LKDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeee----eeCchHHHHH
Confidence 9999877766666665544321 1111111 111222368999999999999999999999999 8999999999
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHH------HHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL------IAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 330 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~ 330 (386)
++...+...+..+|..+|.+||+.|||++.+|++.++|+.+-. ...+|..+.++.+..+|+..+|+|..+++.+
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~ 309 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELL 309 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 9999999999999999999999999999999999999754332 4688999999999999999999999998888
Q ss_pred HhhcC--CCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 331 IKRMN--FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 331 ~~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
.++.. .+.++.++.+.+..++..+.+.|+.+|+++.+++++||++++.++|++|++
T Consensus 310 ~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~ 367 (411)
T KOG1305|consen 310 FPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPAL 367 (411)
T ss_pred cccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHH
Confidence 65432 235678899999999999999999999999999999999999999999964
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-43 Score=307.86 Aligned_cols=349 Identities=20% Similarity=0.250 Sum_probs=306.1
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCC-----cccCCHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPG-----VRFDRYID 95 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~-----~~~~~y~~ 95 (386)
++.+.+++.+|+..|..|++-|.=+++||++....||+ ++..++..+.+..|+..+|++|.....+ +.+++|-+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 56678999999999999999999999999999999985 9999999999999999999999543221 12579999
Q ss_pred HHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhH
Q 016628 96 LGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSV 175 (386)
Q Consensus 96 l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 175 (386)
++..+++|+.|...+.+...+.+..+|+.|.+..+|.+.+.++.. +.+++.|+++..+.++|.+++|++|-++.+
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~l 264 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRL 264 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHH
Confidence 999999999886668889999999999999999999998877763 578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccch
Q 016628 176 SLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM 255 (386)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~ 255 (386)
|.++.+..++.-++++.+|..+-. +|++.+.....+..++....|+++|+|..|..+|+++.. |+||++++
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~----dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN----M~~ps~Fn- 335 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVS----DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN----MKNPSQFN- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc----cCChhHhe-
Confidence 999999988888888888875532 445444444556677888999999999999999999999 89999998
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhhcC
Q 016628 256 WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN 335 (386)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~ 335 (386)
..+.++.+...++-..+|..||++|++++++.|.+|+|+ .-...++++++.+..+.|||+.++...+.+|+.+.+...
T Consensus 336 -~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p 413 (524)
T KOG4303|consen 336 -VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYP 413 (524)
T ss_pred -eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCC
Confidence 788899999999999999999999999999999999986 456778999999999999999999999999998865432
Q ss_pred C---C-------CCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628 336 F---P-------PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 336 ~---~-------~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l 386 (386)
+ + +-+-|....|+++++.+.++|+.+|++..+++++|+++++.++|++|++
T Consensus 414 ~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~l 474 (524)
T KOG4303|consen 414 QTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPAL 474 (524)
T ss_pred CCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHH
Confidence 1 1 1245667789999999999999999999999999999999999999985
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-31 Score=254.63 Aligned_cols=353 Identities=19% Similarity=0.205 Sum_probs=269.5
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+.+++.+..+.++++.+++||+|+|++|++++..|++++++++++.+..++++.+++.|+.++.++.+ .+|.++.++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999987665532 59999999999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
||+ ++++.++.+.+.+++.+.+|.+..+|.+++.+++...... .++..+.+++..++.++++.++...++..+.+...
T Consensus 83 G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 83 GKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 985 6799999999999999999999999999999997542221 56677788888888899999999999999999988
Q ss_pred HHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhH
Q 016628 182 MSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALG 261 (386)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~ 261 (386)
.....++...+.. .+.+.+.. ...+. ..+..+..+..++|+++|||.||+++|++.+| |+++++++.+|+...
T Consensus 161 ~v~~~~~l~~~~~-~~~~~~~l-~~~~~-~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~----~~~~~~~~~~k~~~~ 233 (415)
T COG0814 161 KVIYLVLLVVYLI-PHWNPANL-FALPS-ASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNY----MRKNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHHh-cccCHHHH-hcccc-cchhhHHHHHHHhhHHHhhhhCCccchHHHHH----hccchhHHHHHHHHH
Confidence 6655444433322 22111110 01100 01367788999999999999999999999999 677766557899999
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHH-------------HHHHHHHHHHHHHHhhhccccchHHHHHH
Q 016628 262 AYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL-------------IAAANLMVVVHVIGSYQVFAMPVFHLLEG 328 (386)
Q Consensus 262 ~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~-------------~~~~~i~~~i~~~~s~pl~~~p~~~~~~~ 328 (386)
+..+..++|...+..+|..+|+++.+++++++++++.. ....++.-.+.+..||--.-...++..++
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~ 313 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLAD 313 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhH
Confidence 99999999999999999999999999999999754322 22333333344444433333444566666
Q ss_pred HHHhhcCC--CCC--chhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeec
Q 016628 329 MMIKRMNF--PPG--AAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVS 384 (386)
Q Consensus 329 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P 384 (386)
.++++.+. ++. ........+...+.....+...|..+.+++.+|+.....+.++.|
T Consensus 314 ~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p 373 (415)
T COG0814 314 LFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKP 373 (415)
T ss_pred HHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66542111 111 122233333445666677788888898999999998888888777
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=1.4e-23 Score=199.96 Aligned_cols=336 Identities=15% Similarity=0.147 Sum_probs=244.6
Q ss_pred hHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeeh
Q 016628 32 STFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVL 111 (386)
Q Consensus 32 ~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~ 111 (386)
+++..+++++|+|++++|..+++.|..++++.+++.++.+.++..++.|+..+.|++ .++.++.++.+||+ +.++..
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~--~~~~~~~~~~~G~~-~g~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG--ASFNTIAKDLLGKT-GNIIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhCHH-HHHHHH
Confidence 345678999999999999999999999999999999999999999999987666643 48999999999984 568888
Q ss_pred hhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHh
Q 016628 112 PQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAW 191 (386)
Q Consensus 112 ~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 191 (386)
+..++.++..+.+|....++++..+++..... ..+.....+++..++.+ ...++.|..++++.+.+...+....+.+
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988764321 12223333333333333 3445677888888877776555443333
Q ss_pred hhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHh
Q 016628 192 AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF 271 (386)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~ 271 (386)
.....+.+.++.. + ....+.++.++..+++...++|.+|.+++++.+| ++|+ +|+++|+...+..+++++|+
T Consensus 156 i~~~~~~~~~~~~-~--~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~----~~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLL-D--VALDTSYWPYILSALPVCLTSFGFHGNVPSLYKY----YDGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHh-c--CccccccHHHHHHHHHHHHHHHHcccccHHHHHH----hccC-HHHHHHHHHHHHHHHHHHHH
Confidence 3333222211111 0 0011235567889999999999998889999998 6655 45788999999999999999
Q ss_pred hhhhhhhcccCCCCCh----------h---hhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhhcCCCC
Q 016628 272 PVALIGYWAFGQDVDD----------N---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP 338 (386)
Q Consensus 272 ~~g~~gy~~fg~~~~~----------~---il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~ 338 (386)
+.........+.+.-. + ...+.-++.+...+..+.-.+++..|+.-...+.+|.+.+.++++.+
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--- 304 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--- 304 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---
Confidence 8876666555433211 1 11111123456667788888999999999999999998888876422
Q ss_pred CchhhhhHHHHHHHHHHHHHHhcccch-hhhhhcccccccceeEeecCC
Q 016628 339 GAAVRVVARSAYVAFTLFVGVTFPFFG-DLLGFFGGFGFTPTSYFVSPF 386 (386)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~ia~~vp~~~-~i~~l~Gs~~~~~~~~i~P~l 386 (386)
+.+|........+++.++|.+.|+.. ..++..| +.++.+.+++|++
T Consensus 305 -~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l 351 (381)
T TIGR00837 305 -KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPAL 351 (381)
T ss_pred -cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 22356667777899999999999755 8999999 8788888888863
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.91 E-value=6e-23 Score=194.23 Aligned_cols=342 Identities=16% Similarity=0.212 Sum_probs=247.9
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
++.+.+++++.+.+++||+|+|+||...+..|..++.+.+++++..++++..++.|...+.++ ..+|.+++++.+||
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~- 77 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGK- 77 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCh-
Confidence 356788999999999999999999999999999999999999999999999999998654443 45999999999998
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (386)
.|+++..+...+..++.+.+|....++.+++.++...+ .+.+++.-.+++.++.-.+... +.+.+.+++..-+...+
T Consensus 78 ~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 78 KGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999999999988542 1233333333333332222222 34455555555444333
Q ss_pred HHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHH
Q 016628 185 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYF 264 (386)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~ 264 (386)
..........+.+.+.+.... ......++.....++++.++||..|+++|++.+.+ ++ ++++.+|++..+..
T Consensus 155 ~~~~~l~~~~~p~~~~~~L~~---~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~----~~-d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNLLD---APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYL----GG-DPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHhhhcCHHHhhc---cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHh----Cc-cHHHHHHHHHHHHH
Confidence 333333332222222211111 11224577888899999999999999999999983 32 23356699999988
Q ss_pred HHHHHHhhhhh--hhhcc---------cCCCCCh--hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 265 VNAICYFPVAL--IGYWA---------FGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 265 ~~~~~y~~~g~--~gy~~---------fg~~~~~--~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
+..++|++.-. .|-.. -+++..+ ..+.+..++.+...+..++-.+++.+||--.....+|.+.+.++
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k 306 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFK 306 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888885433 23111 1111111 23334445567777889999999999999999999999999986
Q ss_pred hhcCCCCCchhhhhHHHHHHHHHHHHHHhccc-chhhhhhcccccccceeEeecC
Q 016628 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
.+ ++..+|........++++++|+..|+ |-..+++.| ...+.+..++|+
T Consensus 307 ~~----~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~ 356 (394)
T PF03222_consen 307 LK----NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPA 356 (394)
T ss_pred CC----ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHH
Confidence 52 23345666667778899999999996 889999999 888888888886
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.90 E-value=6.9e-23 Score=191.96 Aligned_cols=345 Identities=15% Similarity=0.081 Sum_probs=246.1
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
.++++.+...+++.+.+++||+|+|++|.+.++.|..++.+++++++..+.+|..++.|...+.++ ..++.+++++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHc
Confidence 456788999999999999999999999999999999999999999999999999999998654443 459999999999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
|| .|+++.+++..+..++.+++|+.-.+|.+++.+++.. .+.++..-.+++.++.-.+.+. ..+...+++.+-..
T Consensus 84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~---~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS---LNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 98 5789999999999999999999999999999987621 1123333334444444444443 44566666654444
Q ss_pred HHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhH
Q 016628 182 MSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALG 261 (386)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~ 261 (386)
..+...++.+.....+-+.+... +. .+..+..+.....++++.++||..|+++|++.+. +++..| +++|++..
T Consensus 159 ~~i~~f~~~~~~l~~~i~~~~L~-~~-~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y----~~~d~~-kir~~I~i 231 (414)
T PRK10483 159 AKVITFFLTFGSLLGHVQPATLF-NV-AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY----YGKDPK-TIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHh-cc-ccccchhHHHHHHHHHHHHhhccCCCcchHHHHH----hCcCHH-HHHHHHHH
Confidence 33332222222212221111110 00 0111233556789999999999999999999987 443223 67799999
Q ss_pred HHHHHHHHHhhhhhhhhccc-----------CCCCCh--hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHH
Q 016628 262 AYFVNAICYFPVALIGYWAF-----------GQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 328 (386)
Q Consensus 262 ~~~~~~~~y~~~g~~gy~~f-----------g~~~~~--~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~ 328 (386)
+..+..++|++.-......- +++.+. +.+.+..++.+...+..++-.+++..||--.....+|.+.+
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996433322222 222211 11112123345666788888999999999999999999999
Q ss_pred HHHhhcCCCCCchhhhhHHHHHHHHHHHHHHhccc-chhhhhhcccccccceeEeecC
Q 016628 329 MMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
.++.++ +...|.......+++++++|+..|+ |-..+++.|.. ...+.-++|+
T Consensus 312 ~~k~~~----~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~ 364 (414)
T PRK10483 312 LFGFDD----SAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPA 364 (414)
T ss_pred HhCCCC----ccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 997642 2345666777889999999999997 88899999966 5566667775
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.90 E-value=1.3e-22 Score=189.92 Aligned_cols=343 Identities=14% Similarity=0.123 Sum_probs=239.4
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
||.+....++.+.+++||+|+|+||.+.++.|..++.+++++++..+.+|..++.|+..+.++ ..++.+++++.+||
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~- 83 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGN- 83 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCh-
Confidence 344888899999999999999999999999999999999999999999999999998665543 45899999999998
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (386)
.|+++.++...+..++.+++|+...++.+++.++...+ ...+++...+++..+.-.+.+. ..+...+.+.+=....+
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~--~~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNLG--YHANPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999875221 1222333334444444444443 33555555554444333
Q ss_pred HHHHHHhhhhccccccCCccccccCCC-chhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHH
Q 016628 185 SYSTIAWAGSLSHGRIENVSYAYKHTS-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAY 263 (386)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~ 263 (386)
...++.+.....+-+.+... +.+... ....+..+..+++++++||+.|+++|++.+. +++. .++.+|++..+.
T Consensus 161 i~f~~~~~~l~~~i~~~~L~-~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y----~~~d-~~~~~kaIl~Gs 234 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILR-DATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC----YGKR-KDKLIKSVVFGS 234 (415)
T ss_pred HHHHHHHHHHhhcccHHHHh-cCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHH----hCcc-HHHHHHHHHHHH
Confidence 22222222111111111110 000000 0011345778999999999999999999998 3322 234558888888
Q ss_pred HHHHHHHhhh--hhhhhc---------ccCCCCCh---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628 264 FVNAICYFPV--ALIGYW---------AFGQDVDD---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (386)
Q Consensus 264 ~~~~~~y~~~--g~~gy~---------~fg~~~~~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~ 329 (386)
.+..++|++- .+.|-. ..|++... ....+ .++.+...+.+++..+++..||--.....+|.+.+.
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888632 222211 12223322 11122 244577778888889999999999999999999999
Q ss_pred HHhhcCCCCCchhhhhHHHHHHHHHHHHHHhccc-chhhhhhcccccccceeEeecC
Q 016628 330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
++.++ +...|.......+++++++|+..|+ |-..++..|.. .+.+.-++|+
T Consensus 314 ~~~~~----~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~ 365 (415)
T PRK09664 314 FKIDN----SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPA 365 (415)
T ss_pred hCCCC----ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 96642 2346777777889999999999997 88899999986 5577667775
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.88 E-value=1.4e-21 Score=183.99 Aligned_cols=336 Identities=16% Similarity=0.152 Sum_probs=240.4
Q ss_pred chhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccC
Q 016628 28 KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGP 107 (386)
Q Consensus 28 s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 107 (386)
+...+++.+.+++||+|+|+||.+.+..|.+++++++++++..+.++.+++.|+..+.++ ..++.+++++.+||+ |+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-GQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-HH
Confidence 778899999999999999999999999999999999999999999999999997543332 358999999999985 67
Q ss_pred eeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHH
Q 016628 108 WIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYS 187 (386)
Q Consensus 108 ~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 187 (386)
++.++...+..+..+.+|....++.+.+.++.+.+. +.+.....+++.++.-.. ...+.|...+++.+=+...+...
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--~i~~~~~~l~F~~~~~~i-v~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--SMSPTAGVLLFTLVAGGV-VCVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988774421 123333333333332222 22244555555554443333222
Q ss_pred HHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHHHH
Q 016628 188 TIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNA 267 (386)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~ 267 (386)
+........+-+.++.... +.+..-+..+++++++||..|+++|++.+. +++ ++++.+|++..+..+..
T Consensus 158 ~~~~~~l~p~~~~~~L~~~------~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y----~~~-~~~~~~k~i~~Gs~i~l 226 (403)
T PRK15132 158 VVMLALMMPHIHKVNLLTL------PLQQGLALSAIPVIFTSFGFHGSVPSIVSY----MGG-NIRKLRWVFIIGSAIPL 226 (403)
T ss_pred HHHHHHHHHhcCHHHHhcC------CccccHHHHHHHHHHHHhhCCcccHHHHHH----hCc-CHHHHHHHHHHHHHHHH
Confidence 2222222222211111100 111123789999999999999999999998 433 33467799999999999
Q ss_pred HHHhhhhhhhhcccCCCC----------Chhhhhcc---CCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhhc
Q 016628 268 ICYFPVALIGYWAFGQDV----------DDNVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM 334 (386)
Q Consensus 268 ~~y~~~g~~gy~~fg~~~----------~~~il~~~---~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 334 (386)
++|+..-......-+.+. .++.+..+ .++.+...+..+...+++.+||--.....+|.+.+.++++.
T Consensus 227 i~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~ 306 (403)
T PRK15132 227 VAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN 306 (403)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999965554444333221 11233332 23457777888888999999999999999999999986542
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhccc-chhhhhhcccccccceeEeecC
Q 016628 335 NFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
+ ...|........+++.++|...|+ |..+.++.|. ..+.+.+++|+
T Consensus 307 ~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~ 353 (403)
T PRK15132 307 T----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPS 353 (403)
T ss_pred c----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 2 234777778889999999999996 7889999886 47788888885
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.85 E-value=3.3e-20 Score=173.81 Aligned_cols=349 Identities=15% Similarity=0.096 Sum_probs=238.3
Q ss_pred HHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehh
Q 016628 33 TFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLP 112 (386)
Q Consensus 33 ~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 112 (386)
.+.+.++.||+|+|+||-.....|.+++++++++++.+++++.+.+.|.....+ ++..++.+++++.+||+ |+.+.++
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~-g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKT-GGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChh-HHHHHHH
Confidence 589999999999999999999999999999999999999999999999754332 23459999999999986 5688999
Q ss_pred hHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHhh
Q 016628 113 QQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWA 192 (386)
Q Consensus 113 ~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 192 (386)
..++..+..+.+|...+.+.+++.+.+..+ ....++....+++..++..... ..-|.+.+++.+=+...+...+....
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~-~~~~~r~l~slifv~~l~~iv~-~G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLG-FAPLNRGFVALFLLLLMAFVIW-FGKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777777776554321 1122333333333333333333 34455555555544433332333333
Q ss_pred hhccccccCCccc-cc---cCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCC---Ccc--ccchhhhhhHHH
Q 016628 193 GSLSHGRIENVSY-AY---KHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAY 263 (386)
Q Consensus 193 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~---~p~--~~~~~~~~~~~~ 263 (386)
+.+.+.+.+.... +. +..........+..+++++++||+.|+++|++...+|++.+ +++ +++.+|++..+.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 3332322222111 10 00000011245788999999999999999999988655443 334 567779999999
Q ss_pred HHHHHHHhhhhhhhhcccCCCC-------Chhhhhc----cCC---C-----hHHHHHHHHHHHHHHHHhhhccccchHH
Q 016628 264 FVNAICYFPVALIGYWAFGQDV-------DDNVLMA----LKR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (386)
Q Consensus 264 ~~~~~~y~~~g~~gy~~fg~~~-------~~~il~~----~~~---~-----~~~~~~~~i~~~i~~~~s~pl~~~p~~~ 324 (386)
.+..++|+..-+.+...-+++. +.+++.. +++ + .+...+..+...+++..||--.....+|
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977776666655432 1122222 222 1 3466677788888999999999999999
Q ss_pred HHHHHHHh---hc--CCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecC
Q 016628 325 LLEGMMIK---RM--NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 325 ~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
.++.+..+ +. ++.+.+..+......+++.+...+...|++=.+++-+|+-..+.+.|++|.
T Consensus 341 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~ 406 (443)
T PRK13629 341 GLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPM 406 (443)
T ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999842 11 112334456666777788899999999999888887777777788888774
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.84 E-value=3.4e-20 Score=175.13 Aligned_cols=348 Identities=11% Similarity=0.045 Sum_probs=240.4
Q ss_pred hhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeee
Q 016628 31 YSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIV 110 (386)
Q Consensus 31 ~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 110 (386)
.-.+.+.++++|+|+|.+|...++.||...++..++...+++++.+++.|.....+. +..++.++.++.|||++| .+.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii 84 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILI 84 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHH
Confidence 348889999999999999999999999988888888888889999988886432222 234999999999998665 667
Q ss_pred hhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHH
Q 016628 111 LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIA 190 (386)
Q Consensus 111 ~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 190 (386)
.+...+..+..+.+|.....+.+.+++.+..... ...+....+..++++......+.+.+.+++.+-....+....+.
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999998888887643111 11122222333333334444577888888777775444433333
Q ss_pred hhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc--ccchhhhhhHHHHHHHH
Q 016628 191 WAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAI 268 (386)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~--~~~~~~~~~~~~~~~~~ 268 (386)
......+.+.+..... +.....+.++..+.+..++||.+|+++++...+.|++.+||+ ++|.+|+...+..+..+
T Consensus 163 ~~~lip~~~~~~L~~~---p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~ 239 (397)
T TIGR00814 163 SLYLIPHWNGANLTTF---PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA 239 (397)
T ss_pred HHHHHHHcCHHHHhcC---CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 3333333222221110 011224578999999999999999999999844333345343 55677999999999999
Q ss_pred HHhhhhhhhhcccCCCCC-----h--hhhhc---cCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhh-c---
Q 016628 269 CYFPVALIGYWAFGQDVD-----D--NVLMA---LKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR-M--- 334 (386)
Q Consensus 269 ~y~~~g~~gy~~fg~~~~-----~--~il~~---~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~-~--- 334 (386)
+|+..-..+....+.+.- + +.+.. -.++.+...+..+.-.+++..||--.....+|.+.+++.+. +
T Consensus 240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~ 319 (397)
T TIGR00814 240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKG 319 (397)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 999877777776664331 1 22221 11334566677788888999999999999999999988321 1
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecC
Q 016628 335 NFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSP 385 (386)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~ 385 (386)
++.+++..+......+++.+...|...|++=.+++-+|+-..+.+.|++|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~ 370 (397)
T TIGR00814 320 KKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPM 370 (397)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 112233445556667778888999999998888887776667777777774
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.58 E-value=2.3e-13 Score=132.19 Aligned_cols=240 Identities=11% Similarity=0.030 Sum_probs=146.4
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
++|+.+.++.+...+++++|+|++.+|...++.|. .+++..++.++........+.|...+.|+.. ......++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 57789999999999999999999999988888886 5788888888888888888888654444432 45677889999
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHH--HhhhcCCCccchhhHHHHHH
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLH--FFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l~~l~~~s~~~~ 180 (386)
|++|.. ..+..++........+.....+++..+++. ..+.....++...++ +-..-.+..|....++.+..
T Consensus 81 ~~~gf~-~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 81 KSGNFM-ANYTYGVSLLIANVAIAISAVGYGTELFGA------TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 987744 444433333322222222233444433321 011111111111111 12222335555555555444
Q ss_pred HHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhh
Q 016628 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (386)
...+...++.........+.++.+.+.. ......+.++..++....|+|.|.+......+| .|||+| ++||++.
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~ 227 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDA----VENPER-NVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHH----hhCccc-cccHHHH
Confidence 3332212211111111111111111110 011122456778888999999999999999999 899987 8999999
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 016628 261 GAYFVNAICYFPVALIGY 278 (386)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy 278 (386)
.+..++.++|++......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998765443
No 17
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.57 E-value=3e-13 Score=134.35 Aligned_cols=300 Identities=12% Similarity=0.056 Sum_probs=180.8
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHHH--HhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAM--AYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~--~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
.+.+|+.+.++.+...++.++|+|++.+|... ...|.. .++.+++.++.+......+.|...+.|... +.+...+
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~ 100 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSY 100 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHH
Confidence 35789999999999999999999999999653 346754 677788888888888888888765555532 3344456
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCC---------cccch-hHHHHHHHHHHHhhhcCCC
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC---------KPLRQ-TFWILIFGSLHFFLSQLPD 168 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~---------~~~~~-~~~~~i~~~~~~pl~~~~~ 168 (386)
+.+|+.+| +++.+..++.....+.+.....++++..++....+.. ..... .....+..++++-....+.
T Consensus 101 ~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 78998776 5566555555544444444455666666654311100 00001 1111122222222334457
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhccccccCCccccc---cCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCC
Q 016628 169 INSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAY---KHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 245 (386)
Q Consensus 169 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~ 245 (386)
.|..++++.+.....+..++++++....+.+.++..... +....+.++.+++.+....+|+|.|.+.+....+|
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE--- 256 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEE--- 256 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHh---
Confidence 777777777666654443333333333222222211000 01122345678899999999999999999999998
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHhhhhhhhhcccCC---CCChh---hhhccCCChHHHHHHHHHHHHHHHHhhhccc
Q 016628 246 TPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ---DVDDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFA 319 (386)
Q Consensus 246 ~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~---~~~~~---il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~ 319 (386)
.|||+| ++||++..++.+++++|.++.+.-...... +.++. ..... ..++...+..+...+.++.+....+
T Consensus 257 -~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g~~~~~~ii~~~~~~~~~~sl~~~~ 333 (557)
T TIGR00906 257 -VKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-GWGPAKYIVAVGALCGMSTSLLGGM 333 (557)
T ss_pred -ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899987 899999999999999999776553322221 11111 22222 2234555555555556555555555
Q ss_pred cchHHHHHHHH
Q 016628 320 MPVFHLLEGMM 330 (386)
Q Consensus 320 ~p~~~~~~~~~ 330 (386)
+..-+.+..+-
T Consensus 334 ~~~sRil~ama 344 (557)
T TIGR00906 334 FPLPRVIYAMA 344 (557)
T ss_pred HHHHHHHHHHH
Confidence 55556655554
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.57 E-value=3.4e-13 Score=131.47 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=168.3
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
++.+|+.+.++..+..++++||+|++..|.. .++.|. ..++..++.+++.......+.|...+.|... ...+..++
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~ 93 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYK 93 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHH
Confidence 3578899999999999999999999998865 556676 5888889999999999999999766666543 77888999
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 179 (386)
.+|+++|.. +.+..++.......+.....+.++..+.+ + .....+..+. .+++-..-.++.|..+++....
T Consensus 94 ~~g~~~gf~-~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 94 YWGPFAGFL-SGWNYWVMFVLVGMAELTAAGIYMQYWFP----D---VPTWIWAAAF-FIIINAVNLVNVRLYGETEFWF 164 (458)
T ss_pred HhChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c---CcHHHHHHHH-HHHHHHHHHhcchhhhhHHHHH
Confidence 999987744 44444444433333333223333332221 1 1111122112 2222222333555555544333
Q ss_pred HHHH---HHHHHHHhhhhcccccc---CCcccccc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccc
Q 016628 180 AVMS---LSYSTIAWAGSLSHGRI---ENVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (386)
Q Consensus 180 ~~~~---~~~~~i~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~ 252 (386)
.... +...++........+.. .+.+...+ ....+.++.++..++....|+|.|.+.+....+| +|||+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~~~P~k 240 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE----ARDPEK 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCHhh
Confidence 2221 11111111111111111 11111010 1112356778899999999999999999999999 899987
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhcccCCCC----Chh---hhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016628 253 ILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----DDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~----~~~---il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~ 325 (386)
++||++..+.....++|+..........+++. +++ +..+.. .++...+..+...+..+.+..-.++..-|.
T Consensus 241 -~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~ 318 (458)
T PRK10249 241 -SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRM 318 (458)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999865444333322211 111 112222 234444455555555555554444445555
Q ss_pred HHHHH
Q 016628 326 LEGMM 330 (386)
Q Consensus 326 ~~~~~ 330 (386)
+..+-
T Consensus 319 l~a~a 323 (458)
T PRK10249 319 LFGLS 323 (458)
T ss_pred HHHHh
Confidence 44444
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.56 E-value=3.2e-13 Score=130.86 Aligned_cols=242 Identities=13% Similarity=0.065 Sum_probs=147.9
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+++|+.+.++.+...++++||+|++.+|...++.|.. .++..++.++........+.|...+.|... ...+..++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 4678999999999999999999999999999888863 677788888888777788888765666543 45556677 7
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHH--HhhhcCCCccchhhHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLH--FFLSQLPDINSVSSVSLAA 179 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l~~l~~~s~~~ 179 (386)
||++|.. +.+..+........++.+...+++..+++... . ....+ ++...++ +-+...+..|..+.++.+.
T Consensus 78 g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~--~~~~~-~~~~~i~~~~~~ln~~gvk~~~~i~~i~ 150 (435)
T PRK10435 78 SPAFGFQ-TGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---D--PIPAG-IACIAIVWVFTFVNMLGGTWVSRLTTIG 150 (435)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---C--hHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9887744 44333332222222333344455554443211 0 00111 1111111 1222233455555555444
Q ss_pred HHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhh
Q 016628 180 AVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (386)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (386)
....+..++........+.+.++...++ ....+.++.++..++....|+|.|.+.+....+| +|||+| ++||++
T Consensus 151 ~~~~li~~~~~~i~g~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E----~knP~r-~iPrAi 224 (435)
T PRK10435 151 LVLVLIPVVGTAIVGWHWFDAATYAANW-NTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGM----VKNPKR-TVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHhhcccc-cCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhCccc-cccHHH
Confidence 4433322111111111111111111111 0112345678999999999999999999999999 899977 789999
Q ss_pred hHHHHHHHHHHhhhhhhhhcc
Q 016628 260 LGAYFVNAICYFPVALIGYWA 280 (386)
Q Consensus 260 ~~~~~~~~~~y~~~g~~gy~~ 280 (386)
..+..++.++|++........
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999877654433
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.55 E-value=1.4e-13 Score=129.64 Aligned_cols=336 Identities=16% Similarity=0.161 Sum_probs=200.4
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHHH-HhhC-hhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAM-AYLG-WGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~-~~~G-~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
.+++|+.+.+..+...++++||+|++..|... ++.| ...+++..+++++++.....+..|.-...|+.. -+.....
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHH
Confidence 35789999999999999999999999999864 4554 446888899999999999999999644333321 2234457
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhc-hHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHH
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC-LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 177 (386)
++||+.+|....++...+..-..+..+.+..+++ +.+.++ .|. ..+...-.+..+++..+.+. +...+++.+.
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp----~c~-~p~~~~~lla~~~l~~lt~~-n~~~V~~a~~ 159 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP----LCD-VPRVASKLLAAALLVLLTLI-NSFSVKWATR 159 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC----CCC-CchHHHHHHHHHHHHHHHHH-hhhhhhHHHH
Confidence 8899877766666665555555556666666666 444443 122 22222223333333333333 4444444444
Q ss_pred HHHHHHH---HHHHHHhh---hhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc
Q 016628 178 AAAVMSL---SYSTIAWA---GSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (386)
Q Consensus 178 ~~~~~~~---~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~ 251 (386)
+..+.++ ..+.++.. +....+..++.+.+. ......+..++..++-...|+|.|+..+-.+.+| .|||+
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteE----iknP~ 234 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEE----IKNPR 234 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHh----hcCcc
Confidence 4444322 22222222 112233333222211 1112345667889999999999999999999999 89998
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhhhhcccCCC--CChh-hhhccC---CChHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016628 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQD--VDDN-VLMALK---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~--~~~~-il~~~~---~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~ 325 (386)
| .+||++..++.++++.|+++-+..+.+-..+ ..++ +-..+. -+++. -+..+++.++.+.+.--.++..-+.
T Consensus 235 k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~ 312 (479)
T KOG1287|consen 235 R-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRL 312 (479)
T ss_pred c-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 8 8999999999999999998877655444321 1111 111111 12333 3456667777777776666666555
Q ss_pred HHHHHHhhcCCCC----Cchhhh--hHHHHHHHHHHHHHHhcccchhhhhhcc
Q 016628 326 LEGMMIKRMNFPP----GAAVRV--VARSAYVAFTLFVGVTFPFFGDLLGFFG 372 (386)
Q Consensus 326 ~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~ia~~vp~~~~i~~l~G 372 (386)
+....++. +.|. .+.++. ...+...+...++..+.+|+..+++.++
T Consensus 313 ~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~s 364 (479)
T KOG1287|consen 313 FYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVS 364 (479)
T ss_pred HHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555432 2221 011111 1122333444455556667887777654
No 21
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.55 E-value=6e-13 Score=130.19 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=143.8
Q ss_pred cCCCcccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 20 DGEPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 20 ~~~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
+.+.+|+.+.++.....++++||+|++..|. ++++.|. ..++..++.+++.......+.|.....+. ..++.+.++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~--~~~~~~ya~ 91 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE--YKSFSDFAS 91 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHH
Confidence 3468999999999999999999999999875 6778887 46777888888887777777775432222 236778899
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHH
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLA 178 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 178 (386)
+.+||..| +++.+..++.......+.....+.++..+.+. .....+.++. .+++-+.-....|..+.++.+
T Consensus 92 ~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------~~~~~~~~~~-~~~~~~iN~~g~~~~~~i~~~ 162 (469)
T PRK11049 92 DLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------LSDWVASLAV-VLLLLSLNLATVKMFGEMEFW 162 (469)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence 99999776 44555544444322223333344444333221 1111222221 112222223345555555544
Q ss_pred HHHHHHHHHHHHhhh--h-cccc--ccCC----ccccccC-CCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCC
Q 016628 179 AAVMSLSYSTIAWAG--S-LSHG--RIEN----VSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE 248 (386)
Q Consensus 179 ~~~~~~~~~~i~~~~--~-~~~~--~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~ 248 (386)
.....+..+++.++. . ...+ ..++ .+...+. ...+.++.++..++....|+|.|.+.+....+| +|
T Consensus 163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~k 238 (469)
T PRK11049 163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE----TK 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH----hc
Confidence 433222211111111 1 1110 0111 1000010 111345667899999999999999999999999 89
Q ss_pred CccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 016628 249 KPSKILMWKGALGAYFVNAICYFPVALIGY 278 (386)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy 278 (386)
||+| ++||+...+.....++|.+......
T Consensus 239 nP~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 239 DPEK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred CHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9977 8899998777777888886655443
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=99.54 E-value=1e-12 Score=129.25 Aligned_cols=314 Identities=11% Similarity=0.083 Sum_probs=173.7
Q ss_pred CCCCCCCcccccccCCCccc---CCCcccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHH
Q 016628 1 MVSASPSPQKEVESNKKWSD---GEPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMW 76 (386)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~ 76 (386)
|+..+.|.++++...+.+.+ ++.+|+.+.++..+..++++||+|++..|. +.++.|. .+++..++.+++....+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~ 79 (499)
T PRK15049 1 MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILR 79 (499)
T ss_pred CCcccCCcccccchhcccccCCchhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 33334444444443333332 236889999999999999999999999887 5777776 578888888998888888
Q ss_pred HHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHH-
Q 016628 77 QMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILI- 155 (386)
Q Consensus 77 ~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i- 155 (386)
.+.|.....|... ...+..++.+||++|.. +.+..++.............+.++..+ +.+ ... ..|...
T Consensus 80 slaELas~~P~aG--g~y~y~~~~~G~~~gf~-~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~----~~~--~~~~~~~ 149 (499)
T PRK15049 80 ALGELVLHRPSSG--SFVSYAREFLGEKAAYV-AGWMYFINWAMTGIVDITAVALYMHYW-GAF----GGV--PQWVFAL 149 (499)
T ss_pred HHHHHHHhCCCCC--CHHHHHHHHhCcHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----CCC--cHHHHHH
Confidence 8888766566543 67888899999987744 444444433222221111222222111 100 011 222221
Q ss_pred HHHHHHhhhcCCCccchhhHHHHHHHHHH---HHHHHHhhhhccccccCC-----ccc-cccCCCchhhhhHHHHHHHHH
Q 016628 156 FGSLHFFLSQLPDINSVSSVSLAAAVMSL---SYSTIAWAGSLSHGRIEN-----VSY-AYKHTSSADYMFRVFNALGQI 226 (386)
Q Consensus 156 ~~~~~~pl~~~~~l~~l~~~s~~~~~~~~---~~~~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~ 226 (386)
...+++-..-.+..|....+..+.....+ ...++........+...+ ... ..+....+.++.+++.++...
T Consensus 150 ~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~ 229 (499)
T PRK15049 150 AALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGV 229 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHH
Confidence 11112222222344444444443332221 111111111111111110 000 000111234455666777889
Q ss_pred HHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhcccC--CCC--Chh---hhhccCCChHH
Q 016628 227 SFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG--QDV--DDN---VLMALKRPGWL 299 (386)
Q Consensus 227 ~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg--~~~--~~~---il~~~~~~~~~ 299 (386)
.|+|.|.+.+....+| .|||+| ++||++..++..+.++|+........... +.. .++ +.... ...+.
T Consensus 230 ~faf~G~e~i~~~aeE----~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~~~~ 303 (499)
T PRK15049 230 VFAFASIEMVGTAAGE----CKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GVPYI 303 (499)
T ss_pred HHHHhhHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-CchhH
Confidence 9999999999999999 899987 89999998888888888865554333222 111 111 12222 12334
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 300 IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 300 ~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
..+..+...+..+.+..-.++..-|.+..+-+
T Consensus 304 ~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ar 335 (499)
T PRK15049 304 GSIMNIVVLTAALSSLNSGLYCTGRILRSMAM 335 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666665555666666655543
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.54 E-value=1.1e-12 Score=128.01 Aligned_cols=291 Identities=14% Similarity=0.094 Sum_probs=170.7
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHH-HHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLP-YAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP-~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
.+.+|+.+.++..+..++++||+|++.+| .+.++.|. .+++..++.+++.......+.|...+.|++. ...+..++
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~ 84 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADD 84 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence 45789999999999999999999999999 56778886 5788888989988888888888765556543 67788899
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHH-HHHHHHhhhcCCCccchhhHHHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILI-FGSLHFFLSQLPDINSVSSVSLA 178 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~l~~l~~~s~~ 178 (386)
.+||++|. ++.+..++.....+.+.....++++..+.+. . ..|... ...+++-..-....|..+.+...
T Consensus 85 ~~g~~~gf-~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 85 AIGRWAGF-TIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred HhCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 99997764 4555545444444444444445444433321 1 122221 11112222223345555555444
Q ss_pred HHHHHHH---HHHHH-hhhhcc-ccccC--Ccccccc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCc
Q 016628 179 AAVMSLS---YSTIA-WAGSLS-HGRIE--NVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (386)
Q Consensus 179 ~~~~~~~---~~~i~-~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p 250 (386)
.....+. ..++. ...... ....+ +.+.-.+ ....++++.++..++....|+|.|.+......+| +|||
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E----~k~P 230 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAE----SSNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHh----hcCh
Confidence 3332221 11111 111111 11100 0110000 1112345667899999999999999999999999 8999
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhcccCCCCC---h-----hhhhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---D-----NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~---~-----~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
+| ++||++..+.....++|++.........+.+.. + ...+... ..+...+..+...+..+.+..-.++..
T Consensus 231 ~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 231 IK-SITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLG-IPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 889999888888888898765543333321111 0 1222222 223344444555555555554445555
Q ss_pred HHHHHHHH
Q 016628 323 FHLLEGMM 330 (386)
Q Consensus 323 ~~~~~~~~ 330 (386)
.|.+..+-
T Consensus 309 sR~~~a~a 316 (452)
T TIGR01773 309 SRMLYSLA 316 (452)
T ss_pred HHHHHHHH
Confidence 55555544
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.53 E-value=2.8e-13 Score=131.76 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=143.9
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+++|+.+.++.+...+++++|+|++.+|...++.|. ..+...++.++........+.|.....|+.. ......++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 467899999999999999999999999998888774 4566777777777777777788655555532 4455588999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhh--cCCCccchhhHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLS--QLPDINSVSSVSLAA 179 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~s~~~ 179 (386)
||++|.. +.+..++.......+......++...+.+.. . +.....++...+++.+. -.+..|...+++.+.
T Consensus 82 g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 82 GPFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPIL----K--DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----C--CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 9987743 3433333322222222222333333333221 0 11111222222222222 233556666655555
Q ss_pred HHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhh
Q 016628 180 AVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (386)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (386)
....+..+.+.....+.....++...+. ......++..+..++....|+|.|.+......+| +|||+| ++||++
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iPrai 228 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAW-NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCc-cccccchHHHHHHHHHHHHHHHHhHHHHHHHHHH----hhCccc-chhHHH
Confidence 4433322221111111111111111111 0011234556777888999999999999999999 899987 889999
Q ss_pred hHHHHHHHHHHhhhhhhhh
Q 016628 260 LGAYFVNAICYFPVALIGY 278 (386)
Q Consensus 260 ~~~~~~~~~~y~~~g~~gy 278 (386)
..+..++.++|.+..+...
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776643
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.52 E-value=8.9e-13 Score=127.79 Aligned_cols=292 Identities=16% Similarity=0.029 Sum_probs=182.0
Q ss_pred cccCchhhhHHhhhhcccccccchHHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMA-YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~GiL~lP~~~~-~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
+|+.+.++.++..+++++|+|++.+|.... ..|. .+++..++.++........+.|...+.|+.. ...+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 578999999999999999999999997654 4454 4667777778888777788888765555532 44566788999
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcc-c-----chhH--HHHHHHHHHHhhhcCCCccchhh
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKP-L-----RQTF--WILIFGSLHFFLSQLPDINSVSS 174 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~-~-----~~~~--~~~i~~~~~~pl~~~~~l~~l~~ 174 (386)
|+.|+. ..+..++.....+..+....++++..+++....+.+. . +... +..+...+++-....+..|..++
T Consensus 79 ~~~g~~-~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTAFI-IGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 987744 5555566655566666666677777776532100000 0 0000 11122222333334557777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 175 VSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
++.+.....+...++.......+.+.+ ++.. ..+.++.++..++....|+|.|.+......+| .|||+| +
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E----~~~p~r-~ 227 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN--NYTP---FMPMGFGGVGAATALVFFAFIGFEAISTAAEE----VKNPER-D 227 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCC---CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHh----ccCccc-c
Confidence 777766655543332222222222111 1111 11235667889999999999999999999999 899976 7
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhcccCCC--CC--h---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016628 255 MWKGALGAYFVNAICYFPVALIGYWAFGQD--VD--D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLE 327 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~--~~--~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~ 327 (386)
++|++..+..++.++|++.........+.+ .+ + .+..+.. .++...+..+...++.+.+.-..+...-|.+.
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998866544322211 11 1 1222222 24455556667777777776665655555555
Q ss_pred HHH
Q 016628 328 GMM 330 (386)
Q Consensus 328 ~~~ 330 (386)
.+-
T Consensus 307 ~~a 309 (429)
T TIGR00909 307 AMS 309 (429)
T ss_pred HHH
Confidence 554
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.52 E-value=1.3e-12 Score=127.86 Aligned_cols=292 Identities=11% Similarity=0.076 Sum_probs=163.8
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+.+|+.+.++..+..++.+||+|++..|.. .+..|-...++..++.+++.......+.|...+.|+.. .+....++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 478899999999999999999999988865 56777544577788888888888888888765566543 677888999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
+||++|. .+.+..++.....+.......+..+..+ .+. .....+.++.. +++-+...+..|..+.++....
T Consensus 89 ~g~~~gf-~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~p~---~~~~~~~~~~~-~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 89 LGPATGY-TVAWLYWLTWTVALGSSLTAAGFCMQYW----FPQ---VPVWPWCLLFC-ALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred cChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCc---CcHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 9998774 3444444443333222222222222211 111 11111222222 2222222334444444433322
Q ss_pred HHHHHHH---HHHh-hhhcc--ccccCCc--ccc-cc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCc
Q 016628 181 VMSLSYS---TIAW-AGSLS--HGRIENV--SYA-YK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (386)
Q Consensus 181 ~~~~~~~---~i~~-~~~~~--~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p 250 (386)
...+..+ ++.. ..... .....+. ..+ .. ....+.+..++..++....|+|.|.+.+....+| +|||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE----TENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCh
Confidence 2111111 1111 11000 0000000 000 00 0011233456788888999999999999999999 8999
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhhhhcccCCC-C---Ch---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchH
Q 016628 251 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DD---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVF 323 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~-~---~~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~ 323 (386)
+| ++||++..+..++.++|+...+........+ . ++ ....+.. ..+...+..+...++.+.+.--.++..-
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~s 313 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG-IPYAADIFNFVILTAILSAANSGLYASG 313 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87 8999999999999999997765433333321 1 11 2222322 2344445556566666655544445555
Q ss_pred HHHHHHH
Q 016628 324 HLLEGMM 330 (386)
Q Consensus 324 ~~~~~~~ 330 (386)
|.+..+-
T Consensus 314 R~l~a~a 320 (471)
T PRK11387 314 RMLWSLS 320 (471)
T ss_pred HHHHHHH
Confidence 5555544
No 27
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=127.89 Aligned_cols=332 Identities=15% Similarity=0.151 Sum_probs=219.6
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+.+|+.+.++--+.-+++.||+| .+.-..+.+.+|.- -++..+++|++.++-++.+.|.....|..+ |+.+.+++.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~ 86 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKY 86 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 47899999999999999999999 56678889999964 467788999999999999999755455543 999999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHH--hhhcCCCccchh-hHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHF--FLSQLPDINSVS-SVSL 177 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--pl~~~~~l~~l~-~~s~ 177 (386)
+|++.| .+..+..++.....+.+-+..++.+++.++++. .+..+.++..+++. =+..+|...++. |++.
T Consensus 87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------PQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 567778888888888888888898888887653 12233333333332 234456666665 4444
Q ss_pred HHHHHHHHHHHHHhhhhcc-ccccC---Cccccc-cCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccc
Q 016628 178 AAAVMSLSYSTIAWAGSLS-HGRIE---NVSYAY-KHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (386)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~ 252 (386)
+-+...+.++++..+..+. .+... +.+.-+ +.-..|+++.++..++...+|||.|.+.+--...| -|||+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E----t~dP~k 234 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE----AKDPEK 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh----hcChhh
Confidence 4444333333333322221 11111 111000 11234778999999999999999999998888888 899988
Q ss_pred cchhhhhhHHHHHHHHHHh-----hhhhhhhcccCCCCCh--hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016628 253 ILMWKGALGAYFVNAICYF-----PVALIGYWAFGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~~y~-----~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~ 325 (386)
.++|++..-..-..++|+ +..+.-|-.++++..+ .++..+. -.+...+.++.+..+...+.---++..-++
T Consensus 235 -~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglystsRm 312 (462)
T COG1113 235 -AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYSTSRM 312 (462)
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhcccccccccchH
Confidence 788998766666666666 5555556555554443 2223332 223444556666777777777777888888
Q ss_pred HHHHHHhhc------CC-CCC-chhhhhHHHHHHHHHHHHHHhcccchhhhhhcc
Q 016628 326 LEGMMIKRM------NF-PPG-AAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFG 372 (386)
Q Consensus 326 ~~~~~~~~~------~~-~~~-~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~G 372 (386)
+..+..+.. +. +++ ...-.....+..++..++....| +.++.++-
T Consensus 313 L~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~ 365 (462)
T COG1113 313 LYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVT 365 (462)
T ss_pred HHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHH
Confidence 887754321 00 111 24445555666677888888888 44444443
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=99.51 E-value=2.2e-12 Score=125.75 Aligned_cols=292 Identities=12% Similarity=0.070 Sum_probs=170.2
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+.+|+.+.++..+..++++||+|++..|. +.+..|. ..++..++.+++.......+.|.....|... ++.+.+++.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 47789999999999999999999999885 5667776 4678888888888888888888765556543 788889999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
+||++| +++.+..++.....+.......+.+++.+.+. .....+..+...++ -..-.+..|..+.+.....
T Consensus 84 ~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------~~~~~~~~~~~~~~-~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------MAQWIPALIAVALV-ALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CchHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHH
Confidence 999887 44555555554444444444444444433221 11122222222221 1122223344433332222
Q ss_pred HHH---H-HHHHHHhh-hhcccccc-C--Ccc-ccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc
Q 016628 181 VMS---L-SYSTIAWA-GSLSHGRI-E--NVS-YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (386)
Q Consensus 181 ~~~---~-~~~~i~~~-~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~ 251 (386)
... + ..+++... .....+.. + +.+ +..+....+.++.++..++....|+|.|.+.+....+| .|||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E----~knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE----AKNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH----hcChh
Confidence 211 1 11111111 11111111 0 111 10001112345778889999999999999999999999 89998
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhhhhcccCCCCC----hh---hhhccCCChHHHHHHHHHHHHHHHHhhhccccchHH
Q 016628 252 KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFH 324 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~ 324 (386)
| ++||++..+...+.++|+............+.. ++ ...+.. ......+.++...++.+.+..-.++..-|
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 899999888888888888654433333322111 11 112221 12233445566666666666555666666
Q ss_pred HHHHHHH
Q 016628 325 LLEGMMI 331 (386)
Q Consensus 325 ~~~~~~~ 331 (386)
.+..+-+
T Consensus 309 ~l~~~a~ 315 (461)
T PRK10746 309 MLYALAK 315 (461)
T ss_pred HHHHHHh
Confidence 6666553
No 29
>PRK11021 putative transporter; Provisional
Probab=99.50 E-value=4e-12 Score=122.40 Aligned_cols=230 Identities=14% Similarity=0.165 Sum_probs=139.8
Q ss_pred CchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCc
Q 016628 27 AKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (386)
Q Consensus 27 ~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 105 (386)
.++++++...++++||+|++.+|.. .+..|- .+++..++.++........+.|...+.|+.. ......++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 3678999999999999999999976 455564 5788888888888888888888766666543 66777899999988
Q ss_pred cCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHH
Q 016628 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLS 185 (386)
Q Consensus 106 g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 185 (386)
|....+. .+........+......+++...++. .... .....+...+++-+...+..|..++++.+..+..+.
T Consensus 78 gf~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 78 GRVTGWL-FLSVIPVGLPAALQIAAGFGQALFGW-----SSWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred HHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHcCC-----CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7554443 33322111111112222333322211 1111 111111122222222334555555555443332221
Q ss_pred HHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHH
Q 016628 186 YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFV 265 (386)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~ 265 (386)
+...... .+..+..+...++ ..+.++.++..++....|+|.|.+......+| +|||+| ++||++..+..+
T Consensus 151 ---i~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 151 ---LVVAIWW-AGDIKPADIPFPA-PGSIEWSGLFAALGVMFWCFVGIEAFAHLASE----FKNPER-DFPRALMIGLLL 220 (410)
T ss_pred ---HHHHHHH-HcCCchhcCCCCC-CCCccHHHHHHHHHHHHHHHhcHHHHHhhHHh----ccCccc-cccHHHHHHHHH
Confidence 1111111 1111111111111 12346778889999999999999999999999 899987 789999999999
Q ss_pred HHHHHhhhhhh
Q 016628 266 NAICYFPVALI 276 (386)
Q Consensus 266 ~~~~y~~~g~~ 276 (386)
+.++|++..+.
T Consensus 221 ~~~lYil~~~~ 231 (410)
T PRK11021 221 AGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 30
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.50 E-value=2e-12 Score=126.72 Aligned_cols=245 Identities=16% Similarity=0.101 Sum_probs=148.5
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhC-hhhHHHHHHHHHHHHHHHHHHHhhccccCCC-cccCCHHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLG-WGPGTMVLVISWVTTLNTMWQMINLHECVPG-VRFDRYIDLGRH 99 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G-~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~l~~~ 99 (386)
+++|+.+.++.++..+++++|+|++.+|....+.| ....++..++.++........+.|...+.|+ .. ..++..++
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~ 81 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYARE 81 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHh
Confidence 35788999999999999999999999999876554 3234566777787777777888887655665 32 45566799
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHH--HHHhhhcCCCccchhhHHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGS--LHFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~--~~~pl~~~~~l~~l~~~s~ 177 (386)
.+||++|.. ..+..++.......++.....+++..+++.... .+.....+.... +++-....++.|..++++.
T Consensus 82 ~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~ 156 (473)
T TIGR00905 82 GFGPYIGFM-SGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS----GNPVPSILGASVLLWVFTFLVLRGVRQAAFINT 156 (473)
T ss_pred HcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999987754 444444333333344444445555555553211 011111111111 1222333446666666666
Q ss_pred HHHHHHHHHHHHHhhhhc--cccccCCccccccCC-CchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 178 AAAVMSLSYSTIAWAGSL--SHGRIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
+.....+...++...... .++.....+...... .....+..+..++....|+|.|.+......+| .|| + |+
T Consensus 157 ~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~-~-r~ 230 (473)
T TIGR00905 157 ITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGR----AKN-K-SD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHH----Hhc-c-cc
Confidence 655443322221111111 111110001101000 11224567888899999999999999999999 788 4 48
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhc
Q 016628 255 MWKGALGAYFVNAICYFPVALIGYW 279 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~ 279 (386)
+||++..+..++.++|++.......
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999977665443
No 31
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.48 E-value=5.7e-12 Score=122.80 Aligned_cols=292 Identities=13% Similarity=0.110 Sum_probs=168.7
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
++.+|+.+.++..+..++++||+|++..|.. .++.|. ..++..++.++........+.|...+.|... ++.+..++
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~ 84 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYK 84 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence 3578999999999999999999999999875 556665 5677888888888888888888765566543 67777889
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAA 179 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 179 (386)
.+||..| +.+.+..++.....+.+.....+++++.+.+. .....+..+... ++-..-....|..+.++.+.
T Consensus 85 ~~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~i~~~-~~~~lN~~gv~~~~~~~~~~ 155 (456)
T PRK10238 85 YWGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------IPTWVSAAVFFV-VINAINLTNVKVFGEMEFWF 155 (456)
T ss_pred HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence 9998766 55555555555555555554455555433221 111222222221 11122222445555555444
Q ss_pred HHHHHHHH---HH-Hhhhhccc-cccC-CccccccC-CCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccc
Q 016628 180 AVMSLSYS---TI-AWAGSLSH-GRIE-NVSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK 252 (386)
Q Consensus 180 ~~~~~~~~---~i-~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~ 252 (386)
....+... ++ ........ +.++ ..+...+. ...++++.++..++....|+|.|.+......+| +|||+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE----~knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAE----ADNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHh----hcChhh
Confidence 33322211 11 11111111 1110 11100010 011345667778888999999999999999999 899987
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhh--hhcccCCCC--Ch---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016628 253 ILMWKGALGAYFVNAICYFPVALI--GYWAFGQDV--DD---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 325 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~~y~~~g~~--gy~~fg~~~--~~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~ 325 (386)
++||++..+.....+.|+..-.. +...+.+-. .+ .+..+.. ..+...+.++...++.+.+..-.++...|.
T Consensus 232 -~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g-~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 232 -SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELG-DTFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999987777777777643222 112222211 11 1222332 234444455556666665555555555555
Q ss_pred HHHHH
Q 016628 326 LEGMM 330 (386)
Q Consensus 326 ~~~~~ 330 (386)
+..+-
T Consensus 310 l~a~a 314 (456)
T PRK10238 310 LFGLA 314 (456)
T ss_pred HHHHH
Confidence 55554
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.45 E-value=2e-12 Score=122.30 Aligned_cols=287 Identities=12% Similarity=0.127 Sum_probs=176.8
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
++.|.+|..+.++++++|+|++.+|....+.+-..+++..++.++........+.+...+.|++ +..++.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 4688999999999999999999999987776656788999999999999999999987767754 7899999999998
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (386)
.|+.+.. ....+....+.......+|. .+....+ ....+...+..+++.-....+..+..++++.+-....+
T Consensus 78 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~l~---~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 78 LGRLLSI-LFILYFFLIAAYLIRIFADF----IKTYLLP---RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHhcC---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 7766443 33343333332222222222 2221111 11122222223333333445688888888877766544
Q ss_pred HH-HHHHhhhhccccccCCccccccCCCchhhhhHHHHHHH-HHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHH
Q 016628 185 SY-STIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG-QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGA 262 (386)
Q Consensus 185 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~ 262 (386)
.. ..+......... +++.-.+..+.++.++..+.. ...++|.+.+.......+ +|||++ .+|+...+
T Consensus 150 ~~~~~il~~~~~~~~-----~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~----~~~~~~--~~k~~~~~ 218 (359)
T TIGR00912 150 ILFILVLILLAPKLG-----NIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPL----LSKKKK--IKKSIIKA 218 (359)
T ss_pred HHHHHHHHHHhcccc-----cHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH----hCChhh--hHHHHHHH
Confidence 43 122222111111 111111122344556665554 788999988887777777 677654 56999999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCCh-------hhhhccCCChHHH---HHHHHHHHHHHHHhhhccccchHHHHHHHHHh
Q 016628 263 YFVNAICYFPVALIGYWAFGQDVDD-------NVLMALKRPGWLI---AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK 332 (386)
Q Consensus 263 ~~~~~~~y~~~g~~gy~~fg~~~~~-------~il~~~~~~~~~~---~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~ 332 (386)
..++.++|..........+|.+..+ +..+...-++..- .+.-..-....+...-+.++...+.+.+.++.
T Consensus 219 ~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~ 298 (359)
T TIGR00912 219 IIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKK 298 (359)
T ss_pred HHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999998888888888754332 1112221111111 11222234555666677778888888888764
Q ss_pred h
Q 016628 333 R 333 (386)
Q Consensus 333 ~ 333 (386)
+
T Consensus 299 ~ 299 (359)
T TIGR00912 299 R 299 (359)
T ss_pred C
Confidence 3
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.45 E-value=6.2e-12 Score=122.39 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=140.1
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-HHhhChh-hHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWG-PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~-~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
+.+|+.+.++.+...++.++|+|++..|.. .+..|-. ..++..++.+++.......+.|...+.|+.. ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 578899999999999999999999999976 4455632 3566677777888877888888655455432 22334568
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHH--HHhhhcCCCccchhhHHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~ 177 (386)
.+||.+|....+...+.........+....++++..+.+ .+...+..+...+ .+-..-.+..|..++++.
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 899877744333323222222233333444444432211 1111111111111 122223345555555555
Q ss_pred HHHHHHHHHHHHHhh--hhccccccCCccccccCC-CchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 178 AAAVMSLSYSTIAWA--GSLSHGRIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 178 ~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
+.....+...++++. ....++. +.+.+.+.. ....++.++..++....|+|.|.+......+| +|||+| +
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~ 227 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE----IKNPGK-T 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH----hcCccc-c
Confidence 544433321111111 1111111 111110000 11123567788899999999999999999999 899987 8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhh
Q 016628 255 MWKGALGAYFVNAICYFPVALIG 277 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~g 277 (386)
+||++..++.++.++|++.....
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999776543
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.44 E-value=1.6e-11 Score=120.87 Aligned_cols=242 Identities=13% Similarity=0.092 Sum_probs=139.5
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
++.+|+.+.++..+..++++||+|++.+|. +.++.|....++..++.+++.......+.|...+.|... ......++
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~ 88 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQN 88 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHH
Confidence 357889999999999999999999999996 566778644688899999999999999999766666543 66777788
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHH-
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLA- 178 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~- 178 (386)
.+|+.+|.. +.+..++........ .....+. ....+.+. .....+..+...+ +-..-..+.|..+.+..+
T Consensus 89 ~~g~~~gf~-~Gw~~~~~~~~~~a~-~~~a~~~---~~~~~~~~---~~~~~~~~~~~~~-~~~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 89 YVEEGFGFA-LGWNYWYNWAVTIAV-DLVAAQL---VMSWWFPD---TPGWIWSALFLGV-IFLLNYISVRGFGEAEYWF 159 (489)
T ss_pred HcChHHHHH-HHHHHHHHHHHHHHH-HHHHHHH---HhhhcCCC---CchHHHHHHHHHH-HHHHHHHcchhhhhhHHHH
Confidence 888877743 443333332222111 1111111 11111111 1111122221111 111222234433333322
Q ss_pred --HHHHHHHHHHH-Hhh--hhcccccc-CCc-cccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc
Q 016628 179 --AAVMSLSYSTI-AWA--GSLSHGRI-ENV-SYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (386)
Q Consensus 179 --~~~~~~~~~~i-~~~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~ 251 (386)
..+..+...++ .+. ....++.. .+. ++.....+.+.++..+..+.....|+|.|.+.+....+| .|||+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~ 235 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE----SEDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH----hcCHH
Confidence 22211111111 111 11111111 011 111001111234556666666778999999999999999 89998
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhhhh
Q 016628 252 KILMWKGALGAYFVNAICYFPVALIGY 278 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~gy 278 (386)
| ++||++..++..+.++|++......
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~ 261 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIIS 261 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 8999999999999999997765433
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.43 E-value=2.9e-11 Score=118.02 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=143.6
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+.+|+.+.++..+..++++||+|++.+|.. .+..|. .+++..++.++........+.|...+.|... ...+..++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 577889999999999999999999999876 556675 4788888888888888888888765556433 666778999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
+||.+|.. +.+..++.....+.......+.++..+. ++ .....+.+.. .+++-....+..|..+.+..+..
T Consensus 83 ~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~-~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 83 LGPLAGYI-TGWTYCFEILIVAIADVTAFGIYMGVWF----PT---VPHWIWVLSV-VLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC---CChHHHHHHH-HHHHHHHHHccchhHHHHHHHHH
Confidence 99977744 4444444433333222222333332222 11 1112222222 22222233345555555554433
Q ss_pred HHHHHHHHHHh-------hhhcccc-ccCCcccccc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc
Q 016628 181 VMSLSYSTIAW-------AGSLSHG-RIENVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (386)
Q Consensus 181 ~~~~~~~~i~~-------~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~ 251 (386)
...+..+++.+ .....+. ...+.+...+ ....+.++.++..++....|+|.|.+......+| .|||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E----~knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE----AKDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChh
Confidence 32221111110 0011111 1111111011 1112345667888999999999999999999999 89998
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhhh
Q 016628 252 KILMWKGALGAYFVNAICYFPVALI 276 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~~ 276 (386)
| ++||++..+.....++|......
T Consensus 230 k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 230 K-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 78999988877778888766444
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.41 E-value=1.4e-11 Score=128.21 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=155.5
Q ss_pred CCCcccCchhhhHHhh-hhcccccccch-HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhcccc-CCCcccCCHHHHH
Q 016628 21 GEPTRRAKWWYSTFHC-VTAMIGAGVLS-LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC-VPGVRFDRYIDLG 97 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~l-i~~~iG~GiL~-lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~-~~~~~~~~y~~l~ 97 (386)
..++++.++++.++.- +.+++|+|++. +++...++|...+++.++++++++..+...+.+.... .++.. .-+.+.
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yi 149 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLI 149 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHH
Confidence 4557889999999998 99999999665 6678889998888999999999999999888886442 22211 234556
Q ss_pred HHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCC--cc-cchhHHHHHHHHHHHhhhcCCCccchhh
Q 016628 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC--KP-LRQTFWILIFGSLHFFLSQLPDINSVSS 174 (386)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~--~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 174 (386)
++.+|+.+|.. +.+..++.+...+..|.+..++++..+++...... .+ .+.+.+..+..+++..+. ....+..+.
T Consensus 150 sralGp~~Gf~-iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak 227 (953)
T TIGR00930 150 SRSLGPEFGGS-IGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENK 227 (953)
T ss_pred HHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 88999987744 55555666666777888888888877765321000 01 112222222222222222 334555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccC---Cc---cc---cccCCCc-hhhhhHHHHHHHHHHHHhcCCcchhhchhcCC
Q 016628 175 VSLAAAVMSLSYSTIAWAGSLSHGRIE---NV---SY---AYKHTSS-ADYMFRVFNALGQISFAFAGHAVALEIQATIP 244 (386)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~---~~---~~---~~~~~~~-~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~ 244 (386)
++.+..++.++.++.+++..+...... +. +. ..+..+. +....++...+++++++|.|......+..|
T Consensus 228 ~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE-- 305 (953)
T TIGR00930 228 AQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD-- 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 554444433322222222111111000 00 00 0000011 112224778889999999999988888888
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 016628 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIG 277 (386)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (386)
+|||+| .+||+...++.+++++|+++.+..
T Consensus 306 --lKnP~r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 306 --LKDPQK-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred --ccChhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899987 899999999999999999887643
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.39 E-value=1.5e-11 Score=121.37 Aligned_cols=247 Identities=12% Similarity=0.092 Sum_probs=142.8
Q ss_pred CCCcccCchhhhHHhhhhcccccccchHHHH-HHhhChh-hHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWG-PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~-~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
.+.+|+.+.++.+...+++++|+|++..|.. .++.|-. ..++..++.++........+.|.....|++. ..+...+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 4568899999999999999999999999875 5556643 1235566777777777788888655555432 4556677
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHH--HHHHhhhcCCCccchhhHH
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFG--SLHFFLSQLPDINSVSSVS 176 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~l~~l~~~s 176 (386)
+.+||++|....+........+.+..+....++++. ....++.. .......++.. ++++-..-.+..|...+++
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~---~~~~~~~~-~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYIL---TPVFPDCE-VPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCC-CchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 899997775443332222222223333333333321 11111110 11111112211 1222222334566666666
Q ss_pred HHHHHHHHHHHHHHhhhh---ccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcccc
Q 016628 177 LAAAVMSLSYSTIAWAGS---LSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKI 253 (386)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~ 253 (386)
.+.....+..+++.++.. ...+..++.+....-.....+..++..++....|+|.|.+.+....+| +|||+|
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E----~knP~r- 266 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEE----VKNPYR- 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHH----hcCchh-
Confidence 555554333222211111 112211111111000011134567888999999999999999999999 899977
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhh
Q 016628 254 LMWKGALGAYFVNAICYFPVALIGY 278 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~~y~~~g~~gy 278 (386)
++||++..+..++.++|++..+...
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998865543
No 38
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.39 E-value=3.2e-11 Score=114.51 Aligned_cols=298 Identities=13% Similarity=0.135 Sum_probs=202.7
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+.+|+...++..+.-++..||+| .++...+.++.|....++..++.|...++.+..+.|.....|.. -+|.+.+.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~s--GsF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVS--GSFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--Cchhhhhhhh
Confidence 46799999999999999999999 56688999999999999999999999999999999976555632 2688888898
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhc--CCCccchh-hHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDINSVS-SVSL 177 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~-~~s~ 177 (386)
.+|-+| ..+.+-.++....++..-++..+..++.+.+. ..+...|..++.++++.+-. +|...+.. ++|.
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 888777 44555666666666666666666666655533 13446777777777665554 55666655 4444
Q ss_pred HHHHHHHHHHHHHhhhhccccccCC---ccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 178 AAAVMSLSYSTIAWAGSLSHGRIEN---VSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
+-++.++.++++.++........++ .++-.++...++++.++...+-+..|+|.|.+.+--...| -+||+| .
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE----s~nP~K-~ 266 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE----SENPRK-S 266 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc----cCCchh-h
Confidence 4444444333333332211111111 1111112234567899999999999999999998888888 899987 8
Q ss_pred hhhhhhHHHHHHHHHHhhhhh-hhhc-ccCCC----------CChhhhhccCC--ChHHHHHHHHHHHHHHHHhhhcccc
Q 016628 255 MWKGALGAYFVNAICYFPVAL-IGYW-AFGQD----------VDDNVLMALKR--PGWLIAAANLMVVVHVIGSYQVFAM 320 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~-~gy~-~fg~~----------~~~~il~~~~~--~~~~~~~~~i~~~i~~~~s~pl~~~ 320 (386)
+||++.-...-..++|++.-+ .|.. .|.|. ..++....+.+ -.....+.+..++++++.+---.+|
T Consensus 267 iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lY 346 (541)
T COG0833 267 IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLY 346 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccch
Confidence 999998888888888884322 2222 33331 11122222211 1234556777788888888777889
Q ss_pred chHHHHHHHHHhh
Q 016628 321 PVFHLLEGMMIKR 333 (386)
Q Consensus 321 p~~~~~~~~~~~~ 333 (386)
..-|++..+-+.+
T Consensus 347 asSR~L~sLA~~g 359 (541)
T COG0833 347 ASSRMLYSLAKQG 359 (541)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888654
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.37 E-value=5.9e-11 Score=115.49 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=144.0
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+.+|+.+.++.+...++.++|......+...++.|+..-++..++.++........+.|...+.|+.. ..+...++.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~ 81 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAF 81 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHh
Confidence 47889999999999999999844556678888889864455666666666666677778665566543 5677789999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
||++|. .+.+..++........+....++++..+++.. ......+ ....++-..-.+..|..++++.+..+
T Consensus 82 G~~~gf-~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~-~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 82 GPWGGF-LAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAAL-VFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 997764 45555555555555555666666666555331 1111111 11111222223344444444443333
Q ss_pred HHHHHHHHHhhhhccccccCCc-c--ccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhh
Q 016628 182 MSLSYSTIAWAGSLSHGRIENV-S--YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKG 258 (386)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~ 258 (386)
..+..+.+.......+.+..+. . +.......+.++.++..++....|+|.|++......+| +|||+| ++||+
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~ipra 227 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE----TKNPKR-DIPRG 227 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCccc-ccCHH
Confidence 2222111111111111111110 0 00001111234567888899999999999999999999 899987 78999
Q ss_pred hhHHHHHHHHHHhhhhh
Q 016628 259 ALGAYFVNAICYFPVAL 275 (386)
Q Consensus 259 ~~~~~~~~~~~y~~~g~ 275 (386)
+..+..++..+|+..-.
T Consensus 228 i~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 228 LIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888888876543
No 40
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.37 E-value=5.1e-11 Score=116.66 Aligned_cols=293 Identities=18% Similarity=0.138 Sum_probs=165.5
Q ss_pred ccCchhhhHHhhhhcccccccchHHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCC
Q 016628 25 RRAKWWYSTFHCVTAMIGAGVLSLPYAMA-YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGP 103 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~GiL~lP~~~~-~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 103 (386)
|+.+.++.+...++++||+|++.+|.... ..|....++..++.++........+.|...+.|+.. -...+..++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 57899999999999999999999998744 556444566678888888888888888765566421 0345558899999
Q ss_pred CccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHH--HHhhhcCCCccchhhHHHHHHH
Q 016628 104 KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 104 ~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
+.|.. +.+..++........+.....+.+..+++...+ ........+...+ .+-....+..|..++++.+...
T Consensus 80 ~~gf~-~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 80 FMGFI-SAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG----GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 87744 444444433323333444444444444332211 1111111212222 2222223566666666665544
Q ss_pred HHHHHHHHHhh--hhccccccCCcc-cccc--CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchh
Q 016628 182 MSLSYSTIAWA--GSLSHGRIENVS-YAYK--HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (386)
Q Consensus 182 ~~~~~~~i~~~--~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (386)
..+...++.+. ....++.....+ ++.. .......+.++..++....|+|.|.+......+| .|| +|+++
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e----~k~--~k~ip 228 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSAR----AEK--RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhh----ccC--cccch
Confidence 33321111111 111111110000 1100 0011223456778889999999999998888887 665 34778
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCC----C----hhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHH
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDV----D----DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 328 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~----~----~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~ 328 (386)
|++..+...+.++|.+.....+...+++. + ....++.- .++...+..+...++.+.+.--.+...-|....
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776554443211 1 11222322 235555666667777776665555555555544
Q ss_pred HH
Q 016628 329 MM 330 (386)
Q Consensus 329 ~~ 330 (386)
+-
T Consensus 308 ~a 309 (468)
T TIGR03810 308 MA 309 (468)
T ss_pred HH
Confidence 43
No 41
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.35 E-value=9.9e-11 Score=115.08 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=144.6
Q ss_pred cccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 24 TRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
+|+.+.++..+..++.+||+|++..|. ..++.|....++..++.+++.......+.|...+.|++ .-.|....++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcC
Confidence 478899999999999999999998775 56677754346778888888888888888876556632 1267888999999
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHH
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 182 (386)
|++| +++.+..++.....+.......+.++..+. + ......|..+.. +++-+.-.+..|..++++.+....
T Consensus 80 ~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 80 PAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWT----D---KVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C---CCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHH
Confidence 9877 445555555444444444444444443221 1 112222332222 222222344555555555444322
Q ss_pred HH---HHHHHHhhhhccccccCCc--c---cccc-CCCch---hhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCc
Q 016628 183 SL---SYSTIAWAGSLSHGRIENV--S---YAYK-HTSSA---DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP 250 (386)
Q Consensus 183 ~~---~~~~i~~~~~~~~~~~~~~--~---~~~~-~~~~~---~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p 250 (386)
.+ ...++........+..... . +..+ ...+. ..+.++..++....|+|.|.+......+| .|||
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~knP 226 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE----AANP 226 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh----hcCh
Confidence 11 1111111111111111000 0 0000 01111 12567888999999999999999999999 8999
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhhh
Q 016628 251 SKILMWKGALGAYFVNAICYFPVALI 276 (386)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~g~~ 276 (386)
+| ++||++..+..++.++|++..+.
T Consensus 227 ~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 227 RK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 89999999999999999986543
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.33 E-value=1.1e-10 Score=113.39 Aligned_cols=278 Identities=12% Similarity=0.070 Sum_probs=159.7
Q ss_pred hhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhH
Q 016628 36 CVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQ 114 (386)
Q Consensus 36 li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~ 114 (386)
.++++||+|++..|. +.++.|. .+++..++.+++.......+.|...+.|... ...+..++.+||++|.. +.+..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~gf~-~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAGYT-IGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHHHH-HHHHH
Confidence 468899999999987 6778886 5888999999999999999999766566543 67888899999987744 44444
Q ss_pred HHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHhh--
Q 016628 115 LIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWA-- 192 (386)
Q Consensus 115 ~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~-- 192 (386)
++.....+.......+..+..+ .+. .....+..+... ++-+.-..+.|..+.+..+.....+...+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~l~-~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSW----VPG---IPIWLFSLVITL-ALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----ccc---CcHHHHHHHHHH-HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4433333222222222222221 111 111111221111 122222334555555554444322221111111
Q ss_pred hhccccccC-----Ccccccc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHHH
Q 016628 193 GSLSHGRIE-----NVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVN 266 (386)
Q Consensus 193 ~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~ 266 (386)
.....+..+ +.+..++ ....++++.++..++....|+|.|.+.+....+| +|||+| ++||++..+...+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~i 225 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAE----SDTPEK-HIVRATNSVIWRI 225 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-hHHHHHHHHHHHH
Confidence 111111110 1000000 1112456678999999999999999999999999 899987 8999999899888
Q ss_pred HHHHhhhhhhhhc--ccCCCC---Ch---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 267 AICYFPVALIGYW--AFGQDV---DD---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 267 ~~~y~~~g~~gy~--~fg~~~---~~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
.++|++..+.... .+++.. .+ ...+... ..+...+..+...++.+.+..-.++...|.+..+-+
T Consensus 226 ~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 226 SIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999975554222 222211 11 2233332 234555566666677677766666666666666553
No 43
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.31 E-value=4.1e-11 Score=117.25 Aligned_cols=305 Identities=12% Similarity=0.069 Sum_probs=195.0
Q ss_pred CCCcccCchhhhHHhhhhcccccccch-HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAGVLS-LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~GiL~-lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
.+.+|+.+.++..+.-++++||+|++- ...+.++.|-..-++..++.+.....++..+.|...+.|.. .-++.....+
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~ 104 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYR 104 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeee
Confidence 467999999999999999999999665 66788899888778888888899999999999976666652 1155666778
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHH--HHccCCcccchhHHHH--HHHHHHHhhhcCCCccchhhH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE--MACSHCKPLRQTFWIL--IFGSLHFFLSQLPDINSVSSV 175 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~--~~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~l~~l~~~ 175 (386)
..|+-+| .++.+-.++.....+.+-....+.+++.+.. ......+..+...|.. ...++++.+..++..-+....
T Consensus 105 ~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 105 FVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 8898776 5566667777777777778888888888760 0000001111122222 233333344444444444444
Q ss_pred HHHHHHHHHH---HHHHHhhhhccccccCCcc----ccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCC
Q 016628 176 SLAAAVMSLS---YSTIAWAGSLSHGRIENVS----YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE 248 (386)
Q Consensus 176 s~~~~~~~~~---~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~ 248 (386)
.....+.+.+ ...+++.....+.+..+.. +..+....+.++.++.+.+..+.|+|.|.+.+-...+| -|
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E----~k 259 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE----AK 259 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh----cc
Confidence 4444443332 2222211111222111111 11112233445889999999999999999998888888 89
Q ss_pred CccccchhhhhhHHHHHHHHHHhhhhhhhhc--ccCCC-CChhh------hhcc--CCChHHHHHHHHHHHHHHHHhhhc
Q 016628 249 KPSKILMWKGALGAYFVNAICYFPVALIGYW--AFGQD-VDDNV------LMAL--KRPGWLIAAANLMVVVHVIGSYQV 317 (386)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~--~fg~~-~~~~i------l~~~--~~~~~~~~~~~i~~~i~~~~s~pl 317 (386)
||+| .+|+++..++..+..+|+...+.--+ .|.+. ..++. .... ..-...-.+.++..++.++.+---
T Consensus 260 NP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~ 338 (554)
T KOG1286|consen 260 NPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS 338 (554)
T ss_pred CCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence 9987 89999999999999999977665222 23221 11111 1011 111222236778888888888888
Q ss_pred cccchHHHHHHHHHh
Q 016628 318 FAMPVFHLLEGMMIK 332 (386)
Q Consensus 318 ~~~p~~~~~~~~~~~ 332 (386)
.++++-|.+..+.+.
T Consensus 339 ~~y~~sR~l~amA~~ 353 (554)
T KOG1286|consen 339 SLYAGSRVLYALAKD 353 (554)
T ss_pred HhHHhHHHHHHHHhc
Confidence 889998988888654
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.30 E-value=1.2e-10 Score=108.24 Aligned_cols=284 Identities=15% Similarity=0.205 Sum_probs=177.9
Q ss_pred cCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCc
Q 016628 26 RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (386)
Q Consensus 26 ~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 105 (386)
|.|.+|....++.+++|+|++.+|....+.+ ..|++..++.+.......+++.+..++.|++ +..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 5788999999999999999999999876665 2677777777777777777777766666765 89999999999988
Q ss_pred cCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHH-HHHHHHhhhcCCCccchhhHHHHHHHHHH
Q 016628 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILI-FGSLHFFLSQLPDINSVSSVSLAAAVMSL 184 (386)
Q Consensus 106 g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (386)
|+.+..+. .+..+.......-..+|.++... .+ +...|.+. ...+..--...++++.+++.+.+-....+
T Consensus 77 g~ii~~~~-~l~~l~~~~~~lr~~~~~i~~~~---lp-----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 77 GKIINLLY-ILYFLLISALVLREFSEFIKTYL---LP-----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh---cC-----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 86544433 33333333222222222222211 11 11333333 33333444556789999986666655444
Q ss_pred HHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHH
Q 016628 185 SYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYF 264 (386)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~ 264 (386)
.....+...... +.+++.-.+....++.++..+.....+.|.+......+... .|||++. .|....+..
T Consensus 148 i~~~~i~~~~~~-----~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~----~~~~~~~--~k~~~~~~~ 216 (320)
T PF03845_consen 148 ILLLLILLLSIP-----NIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPF----VKDKKKL--KKSLLIAIL 216 (320)
T ss_pred HHHHHHHHHhcc-----cCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchHH--HHHHHHHHH
Confidence 433333332222 22332222234567788888888889999988887777777 6666554 488889999
Q ss_pred HHHHHHhhhhhhhhcccCCCCCh-------hhhhccCCChHHH---HHHHHHHHHHHHHhhhccccchHHHHHHHHHhh
Q 016628 265 VNAICYFPVALIGYWAFGQDVDD-------NVLMALKRPGWLI---AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 333 (386)
Q Consensus 265 ~~~~~y~~~g~~gy~~fg~~~~~-------~il~~~~~~~~~~---~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 333 (386)
.+.++|...-+.....||.+..+ +..+..+-++..- .+.-..-....+....+..+...+.+.+.++.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998888888888864321 1111111011111 111222445556666677888888888888653
No 45
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.21 E-value=3.7e-10 Score=109.40 Aligned_cols=288 Identities=17% Similarity=0.159 Sum_probs=171.0
Q ss_pred CchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHhhccccCCCcccCCHHHHHHHhhCCCc
Q 016628 27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL 105 (386)
Q Consensus 27 ~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 105 (386)
.++++.+...++.++|+|++..| ...+.|.. +++..++.+.+. ......+.|...+.|++. ..+...++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 66666764 666666666665 566666677544444433 67788899999987
Q ss_pred cCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHH--HHHHHHhhhcCCCccchhhHHHHHHHHH
Q 016628 106 GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILI--FGSLHFFLSQLPDINSVSSVSLAAAVMS 183 (386)
Q Consensus 106 g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 183 (386)
| ++..+...+........+.....+++...++. ...+ +.....++ ..++.+.....+..|..++++.......
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGP---DLNP-SPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---GGTC-SHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccc---cccc-ccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 7 44555555555555545544445444333321 0000 11122222 2222233334456677777766666555
Q ss_pred H-HHHHHHhhhhccccccCCcc---ccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhh
Q 016628 184 L-SYSTIAWAGSLSHGRIENVS---YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGA 259 (386)
Q Consensus 184 ~-~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~ 259 (386)
+ ....+.+...+.....+..+ ... +...+..+.....++....|+|.|.+......+| +|| |+++|++
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k~---k~ip~ai 223 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSL-STFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEE----NKN---KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SH-SCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGG----SSS---HHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccc-cccCCccccchhhHHHHHHhhccccccccccccc----ccc---hhheeec
Confidence 5 22222222222222111111 001 1111223335788999999999999999999998 665 3678999
Q ss_pred hHHHHHHHHHHhhhhhhhhcccCCCCC---hh-------hhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628 260 LGAYFVNAICYFPVALIGYWAFGQDVD---DN-------VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (386)
Q Consensus 260 ~~~~~~~~~~y~~~g~~gy~~fg~~~~---~~-------il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~ 329 (386)
..+..++.++|.+..+......+++.. ++ ..+... .++...+..+...+..+.+.........|.+..+
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhccccc
Confidence 999999999999887766655544221 11 111111 2355556667777777777777777777777777
Q ss_pred HHh
Q 016628 330 MIK 332 (386)
Q Consensus 330 ~~~ 332 (386)
-+.
T Consensus 303 a~d 305 (426)
T PF13520_consen 303 ARD 305 (426)
T ss_dssp HHT
T ss_pred ccc
Confidence 654
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.13 E-value=1.9e-09 Score=105.74 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=168.7
Q ss_pred CCcccCchhh-hHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWY-STFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~-~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+++|+.+.++ .....++.++|.|++.+|......+ ....+..++.++........+.+...+.|+.. .+++..++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 4667778888 8888889999999999998887665 22333345555555555566666544445443 567778999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHH--HHhhhcCCCccchhhHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLA 178 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~ 178 (386)
+|++.| +.+.+..++..............+.+..+.+... ........+..+..++ .+-+.-.+..|...++..+
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 998776 5566565665555555555555554444443210 0000001222222222 2222334456666666655
Q ss_pred HHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhh
Q 016628 179 AAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKG 258 (386)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~ 258 (386)
.....+...++..............+...+..........+..++....++|.|.+......+| +|||+| ++||+
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E----~knp~r-~ip~a 237 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEE----VKNPKR-TIPRA 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHH----hcCccc-cccHH
Confidence 5554443333333222222111111100000002234447889999999999999999999999 899877 58899
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccCCC-CC-----h---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628 259 ALGAYFVNAICYFPVALIGYWAFGQD-VD-----D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 329 (386)
Q Consensus 259 ~~~~~~~~~~~y~~~g~~gy~~fg~~-~~-----~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~ 329 (386)
+..++..+.++|.+.........+++ .. . +...... ..+...+..+...++.+.+........-|.+..+
T Consensus 238 ii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ 316 (466)
T COG0531 238 IILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAM 316 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887766665542 11 1 1111111 1345555556666666666544444333443333
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.04 E-value=8.9e-08 Score=94.03 Aligned_cols=249 Identities=13% Similarity=0.013 Sum_probs=137.4
Q ss_pred CCCcccCchhhhHHhhhhcc-cccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAM-IGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~-iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
+|.+|+.+.++.+..-++.+ +|+|+..++.. ..+.|- ..+...++.++........+.|...+.|... ..++..+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~ 85 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSR 85 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHH
Confidence 35788999999999888874 89999887765 556665 4677777777777777888888765566543 5566678
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHc--cCCccc---chh--HHHHH-HHHHHHhhhcCCCcc
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC--SHCKPL---RQT--FWILI-FGSLHFFLSQLPDIN 170 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~--~~~~~~---~~~--~~~~i-~~~~~~pl~~~~~l~ 170 (386)
+.+||++|.. +.+..++................+..+.+... .....+ ... .+.+. ...++.-+.-.+..|
T Consensus 86 ~~~g~~~gf~-~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIGWF-AGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999987744 44444444332222222222233322221111 000001 011 11111 111122222233555
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcccccc-CCcccccc-CCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCC
Q 016628 171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRI-ENVSYAYK-HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE 248 (386)
Q Consensus 171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~ 248 (386)
..++++.+..+..+...++++.......+. +...+... ....+.....+..+.....|+|.|.+......+| +|
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE----~k 240 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEE----TK 240 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHH----hc
Confidence 566665554443332222222211211111 11001100 0011112345556777788999999999999999 89
Q ss_pred CccccchhhhhhHHHHHHHHHHhhhhhhhh
Q 016628 249 KPSKILMWKGALGAYFVNAICYFPVALIGY 278 (386)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy 278 (386)
||+| ++||++..+..+..++|.+.-+...
T Consensus 241 nP~r-~iPrai~~s~~i~~~~~~~~~~~~~ 269 (475)
T TIGR03428 241 NPRR-VAPRTILTALSVSALGGGLMILGAL 269 (475)
T ss_pred Ccch-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 8999999999887776655444433
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.92 E-value=4.5e-07 Score=89.32 Aligned_cols=243 Identities=12% Similarity=0.061 Sum_probs=130.2
Q ss_pred CCcccCchhhhHHhhhhcccc--cccch-HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIG--AGVLS-LPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG--~GiL~-lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
+.+|+.+.++.+...+. ++| +|+.. .+.+.++.|....++..++.+++.......+.|...+.|+.. ......+
T Consensus 9 ~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 46788999998887777 444 56544 445677778755577888888888888888888765566543 5677788
Q ss_pred HhhCCCccCeeehhhHHHHh---hhhheeeeeechhchHHHHHHHccCC-cccchhHHHHHHHHH--HHhhhcCCCccch
Q 016628 99 HAFGPKLGPWIVLPQQLIVQ---VGCDIVYMVTGGKCLKKFVEMACSHC-KPLRQTFWILIFGSL--HFFLSQLPDINSV 172 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~---~g~~~~y~v~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~--~~pl~~~~~l~~l 172 (386)
+++|+++|+....+.-+... ...+.+.....++++........+.. ...+......+...+ ++-+.-....|..
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 89998777666555434333 22233223333444443332211110 001111112222111 1222223344555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcc--ccccCCccccc---cCCC--chhhhhHHHHHHHHHHHHhcCCcchhhchhcCCC
Q 016628 173 SSVSLAAAVMSLSYSTIAWAGSLS--HGRIENVSYAY---KHTS--SADYMFRVFNALGQISFAFAGHAVALEIQATIPS 245 (386)
Q Consensus 173 ~~~s~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~ 245 (386)
+.+..+..+..+...+++...... .+..++.+... .+.. ...+...+..++....|+|.|.+......+|
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E--- 242 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE--- 242 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh---
Confidence 555544333322222211111111 11111111100 0000 0111124556666788999999999999999
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHhh
Q 016628 246 TPEKPSKILMWKGALGAYFVNAICYFP 272 (386)
Q Consensus 246 ~m~~p~~~~~~~~~~~~~~~~~~~y~~ 272 (386)
.|||+| ++||++..+..+..+++.+
T Consensus 243 -~knP~r-~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 243 -IENPEV-VGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred -cCChhh-hcCHHHHHHHHHHHHHHHH
Confidence 899977 8999999888776654443
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.92 E-value=2.7e-09 Score=104.89 Aligned_cols=285 Identities=16% Similarity=0.152 Sum_probs=160.2
Q ss_pred Hhhhhcccccccc-hHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehh
Q 016628 34 FHCVTAMIGAGVL-SLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLP 112 (386)
Q Consensus 34 ~~li~~~iG~GiL-~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~ 112 (386)
+..+++++|+|++ ..+.+..+.|....++..++.+++....+..+.+...+.|.. -++.+..++.+||..|....+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~--Gg~y~y~~~~lg~~~Gf~~gw- 80 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSA--GGFYAYASRGLGPALGFAAGW- 80 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccc--cchhhhhhhccCCcCCceeeH-
Confidence 3446788999954 467788899986678888888888888888888876555543 277888899999988855444
Q ss_pred hHHHHhhhhheeeeeechhchHHH--HHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHH---HH
Q 016628 113 QQLIVQVGCDIVYMVTGGKCLKKF--VEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLS---YS 187 (386)
Q Consensus 113 ~~~~~~~g~~~~y~v~~~~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~---~~ 187 (386)
..++.............+..++.+ .+..... +.+. ..+..+..+++..+. ....|..+.+...-....+. ..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~li~~ 157 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPST-WVWG-ILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIALIAF 157 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccccccc-cccc-chhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhHhhhh
Confidence 445555555554444545444433 2211000 0000 011222222222222 22344444333322221111 11
Q ss_pred HHHh-hhhccccccCCc-ccccc----C-------CCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccc
Q 016628 188 TIAW-AGSLSHGRIENV-SYAYK----H-------TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL 254 (386)
Q Consensus 188 ~i~~-~~~~~~~~~~~~-~~~~~----~-------~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~ 254 (386)
++.. ......+...+. .++.+ + .+...++.++..++...+++|.|.+......+| .|||+| +
T Consensus 158 ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E----~k~P~k-~ 232 (478)
T PF00324_consen 158 IIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEE----AKNPRK-T 232 (478)
T ss_pred hhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccccc----CCCchh-h
Confidence 1111 111111111111 00000 0 011224788999999999999999998888888 899987 8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhh------------hhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 255 MWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNV------------LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i------------l~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
+||+...++....++|++.....-...+.+..... .... ...+...+.++....+.+.+.--.++..
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYS-GGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhc-ccccccceecccchhhhhhhhhhhhccc
Confidence 99999999999999999887765555554332111 1111 1234444555556666665555555555
Q ss_pred HHHHHHHH
Q 016628 323 FHLLEGMM 330 (386)
Q Consensus 323 ~~~~~~~~ 330 (386)
.|.+..+-
T Consensus 312 sR~l~ama 319 (478)
T PF00324_consen 312 SRLLYAMA 319 (478)
T ss_pred ceeehhhh
Confidence 44444333
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=83.50 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=134.4
Q ss_pred chhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccc------------cCCCc-------
Q 016628 28 KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE------------CVPGV------- 88 (386)
Q Consensus 28 s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~------------~~~~~------- 88 (386)
|-.-....+.|-++|+|.|.||.+|+..||.+++.++.+.++.++.+....+++.. +..++
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 33445677889999999999999999999999999999999999999887777421 00000
Q ss_pred -----------------------------------ccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhch
Q 016628 89 -----------------------------------RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 133 (386)
Q Consensus 89 -----------------------------------~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l 133 (386)
+....++++...|.| .|-.+..++++++++|-...|...+-...
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 011357778888875 78888899999999999999988777666
Q ss_pred HHHHHHHc--cC-------Cccc-------------chhHHHHHHHHH-HHhhhcCCCccchhhHHHHHHHHHHHHHHHH
Q 016628 134 KKFVEMAC--SH-------CKPL-------------RQTFWILIFGSL-HFFLSQLPDINSVSSVSLAAAVMSLSYSTIA 190 (386)
Q Consensus 134 ~~~~~~~~--~~-------~~~~-------------~~~~~~~i~~~~-~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 190 (386)
.++..... ++ |... ..+.+..++.++ .+|+.+. ++++-+++.++...+-....+..
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 66554433 11 1111 123344444443 3466654 55566666655554332222221
Q ss_pred hhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhc
Q 016628 191 WAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 242 (386)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~ 242 (386)
......+.. ++.. +.++....+-++-..++...|+|.+|...|.....
T Consensus 251 ~~l~tmqae-edaa---~a~p~arc~cgfgkl~~~aly~~~a~cmapda~ga 298 (319)
T KOG3832|consen 251 ISLATMQAE-EDAA---AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGA 298 (319)
T ss_pred hhhhhhhhc-cccc---ccCCccccccccccccchhhHHHHhhccCCCCCCC
Confidence 111111211 1111 12233445556677899999999999999998876
No 51
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.82 E-value=4.9e-07 Score=89.29 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=128.3
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHhhccccCCC-cccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT-LNTMWQMINLHECVPG-VRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~-~~s~~~l~~~~~~~~~-~~~~~y~~l~~~~ 100 (386)
.+|+.+.++.+...+++++|.+ .+|.++++.|.. +++..++.+.+. ......+.|...+.|+ +. .-+...+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 4678999999999999999976 568888888864 555555555443 3344566776544553 22 456668899
Q ss_pred hCCCccCeeehhhHHHHhhhhh---ee-------eeeechhchHHHHHHHccCCcccch-hHHHHHHHHH--HHhhhcCC
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCD---IV-------YMVTGGKCLKKFVEMACSHCKPLRQ-TFWILIFGSL--HFFLSQLP 167 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~---~~-------y~v~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~pl~~~~ 167 (386)
+||++|+...+ ..+....... .. +.. .+.+..+..+.. ..+. ..+.++.... ++-....+
T Consensus 80 ~G~~~gf~~~w-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 80 VGPKFAFIGTF-MWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHFL-----GLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred cCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhhh-----cccchHHHHHHHHHHHHHHHHHHcc
Confidence 99988854222 2222111111 00 000 111111000000 0111 1111222222 22233455
Q ss_pred CccchhhHHHHHHHHHHH----HHHHHhhhhcccc-ccC-Cccc-cccC--CCchhhhhHHHHHHHHHHHHhcCCcchhh
Q 016628 168 DINSVSSVSLAAAVMSLS----YSTIAWAGSLSHG-RIE-NVSY-AYKH--TSSADYMFRVFNALGQISFAFAGHAVALE 238 (386)
Q Consensus 168 ~l~~l~~~s~~~~~~~~~----~~~i~~~~~~~~~-~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~fsf~~~~~~~~ 238 (386)
..+..++++.++....+. .+++........+ ..+ +.+. +..+ .+...+..++..++....|+|.|.+....
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666554432221 1111111111111 111 1110 0000 01111124577788889999999999999
Q ss_pred chhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 016628 239 IQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 277 (386)
Q Consensus 239 i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (386)
..+| +|||+| ++||++..+...+.++|.+..+..
T Consensus 233 ~a~E----~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 233 LVDK----TENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHh----ccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 899987 889999999999999999764443
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.75 E-value=6.7e-07 Score=87.87 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=116.0
Q ss_pred cCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 26 RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTL-NTMWQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 26 ~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
|.+.+..++..+.+.++ +-.+|.. ++.|. .+++.+++.+++.. -......|.....|++. ......++++|++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 46666666666655555 5556755 56886 35555555555443 35556666544445432 5566689999998
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccch-hHHHH-HHHHHH--HhhhcCCCccchhhHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQ-TFWIL-IFGSLH--FFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~-~~~~~-i~~~~~--~pl~~~~~l~~l~~~s~~~~ 180 (386)
+|.. ..+..++........-+...+..+..+.+... ....... .+... +..++. +-+.-.+..|..+.++.+..
T Consensus 76 ~gf~-~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WGFL-AIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-VDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 8744 33333332211000000001111110100000 0001111 12221 122212 22233456666655554332
Q ss_pred HH-HH---HHHHHHhhhhccccccCCccccccC-CCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccch
Q 016628 181 VM-SL---SYSTIAWAGSLSHGRIENVSYAYKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM 255 (386)
Q Consensus 181 ~~-~~---~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~ 255 (386)
.. .+ ...++........+..+..+....+ .+...++.++..+. ...|+|.|.+.+....+| +|||+| ++
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E----~knP~r-~i 227 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKD----VDNPDK-NY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHh----ccCccc-ch
Confidence 11 11 1111111111111211111111100 01111233333333 457899999999999998 899988 88
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhcccC
Q 016628 256 WKGALGAYFVNAICYFPVALIGYWAFG 282 (386)
Q Consensus 256 ~~~~~~~~~~~~~~y~~~g~~gy~~fg 282 (386)
||++..+..++.++|.+..+.-....+
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999876655443333
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.67 E-value=1.7e-06 Score=85.42 Aligned_cols=235 Identities=8% Similarity=-0.029 Sum_probs=115.8
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHH--HHHHHHHhhccccCC-CcccCCHHHHHHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTT--LNTMWQMINLHECVP-GVRFDRYIDLGRH 99 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~--~~s~~~l~~~~~~~~-~~~~~~y~~l~~~ 99 (386)
.++|.+.++.++..+.... ++-.+| .+++.|+ +.+...+.+.+. ........|.....+ ++ -......++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~--GG~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEE--GGIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--CCeeeehhh
Confidence 3566888888887777765 467888 4777885 344444444443 334566666543322 21 144556789
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHH-H--HHhhhcCCCccchhhHH
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGS-L--HFFLSQLPDINSVSSVS 176 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~--~~pl~~~~~l~~l~~~s 176 (386)
++|+++|.. ..+..++....................... +... .+ .++..+..+ + ++.+...+..|...+++
T Consensus 75 a~G~~~Gf~-~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--~~~~-~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 75 TLGERFGFA-AIFFGWFQIAIGFIPMIYFILGALSYILKF--PALN-ED-PIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ccCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhc-cC-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999988853 333333322211111110111111111110 0100 01 122222211 1 22233344555555555
Q ss_pred HHHHHHHH-H---HHHHHhhhhccccccCCccccccCC-CchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcc
Q 016628 177 LAAAVMSL-S---YSTIAWAGSLSHGRIENVSYAYKHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS 251 (386)
Q Consensus 177 ~~~~~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~ 251 (386)
.++..... . .+++........+.+...+.+.... +...+ .+....+....|+|.|.+......+| +|||+
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~faf~G~E~~a~~a~E----~knP~ 224 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSK-VGTLVVFVAFIGAYMGVEASASHINE----LENPG 224 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCccc-ccHHHHHHHHHHHHhcHHHHHHHHHH----ccCCc
Confidence 44332111 1 1111111112222221111111000 11111 12334555579999999999999999 89998
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhh
Q 016628 252 KILMWKGALGAYFVNAICYFPVAL 275 (386)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~y~~~g~ 275 (386)
| ++||++..+..++.++|.+..+
T Consensus 225 r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 225 R-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHH
Confidence 7 7899999999888888876443
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.51 E-value=2e-05 Score=76.64 Aligned_cols=297 Identities=12% Similarity=0.052 Sum_probs=154.1
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHh--hChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAY--LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~--~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
++|+.++++-...-.+..+...-+........ .++..+++..++..++...-+.+....-.+ ...++.-+.+..
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r----~Gl~~~v~sR~~ 85 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK----YGLPFPVLSRAS 85 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH----hCCCcchhhhhh
Confidence 34445766666666655555544444444333 344555555555544444333333332111 123678889999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccc------hhHHHHHHHHHHHhhhcCCCccchhh
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR------QTFWILIFGSLHFFLSQLPDINSVSS 174 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~------~~~~~~i~~~~~~pl~~~~~l~~l~~ 174 (386)
||. .|..+..+...+...|-...-....++.+..+++...+...... .....+++..+.+++......+..+.
T Consensus 86 FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 86 FGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred hhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 997 47777787777888877777777888888888877653211111 12223344455556555655555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc-ccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCC-cchhhchhcCCCCCCCccc
Q 016628 175 VSLAAAVMSLSYSTIAWAGSLS-HGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSK 252 (386)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~~~~~m~~p~~ 252 (386)
....+....+....+....... ++..+..+ .......+.....+..++...+-.+... .+.+...+. +|++++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy----~~~~~~ 239 (442)
T TIGR00800 165 FEWLAVVPPFAAFGMLIWALSKAHGKGPLGE-LTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF----GKSKKT 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh----cCCccc
Confidence 5555554333222222111111 11111111 1000122334566666666655444444 567777777 566555
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhcc----cCCCCCh--hhhhccCCChHHHHHHH------HHHHHHHH-Hhhhccc
Q 016628 253 ILMWKGALGAYFVNAICYFPVALIGYWA----FGQDVDD--NVLMALKRPGWLIAAAN------LMVVVHVI-GSYQVFA 319 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~~y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~~~~------i~~~i~~~-~s~pl~~ 319 (386)
.. +....++.........+|+.+-.. +|+...+ +....+... +.....+ +...+..+ ..-..+.
T Consensus 240 ~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ 316 (442)
T TIGR00800 240 AI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFGFCFVVAQLSTNISANS 316 (442)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33 446666666667777777666554 7654332 334444322 1111111 22222222 3556667
Q ss_pred cchHHHHHHHHHh
Q 016628 320 MPVFHLLEGMMIK 332 (386)
Q Consensus 320 ~p~~~~~~~~~~~ 332 (386)
++.-..+...+++
T Consensus 317 ys~~l~l~~l~~~ 329 (442)
T TIGR00800 317 YSAGLDIAALLPK 329 (442)
T ss_pred cchHHHHHHhCcC
Confidence 7777777776643
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.16 E-value=0.00084 Score=65.90 Aligned_cols=298 Identities=10% Similarity=-0.030 Sum_probs=139.4
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-H-HhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-M-AYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRH 99 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~-~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 99 (386)
+++|+-++++-+..-.+..+..+.+.+--. . ...++..+++..++..++...-+.+..+.-. +...++.-+.+.
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~----~~Gl~~~v~sR~ 97 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGS----KYGVPFAMILRA 97 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccc----ccCCChhHhHHH
Confidence 345556666555554444433222211111 1 2244455666665555544444444444222 223488999999
Q ss_pred hhCCCccCeeehhhHH-HHhhhhheeeeeechhchHHHHHHHccCCc---------ccchhHH--HHHHHHHHHhhhcCC
Q 016628 100 AFGPKLGPWIVLPQQL-IVQVGCDIVYMVTGGKCLKKFVEMACSHCK---------PLRQTFW--ILIFGSLHFFLSQLP 167 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~-~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~---------~~~~~~~--~~i~~~~~~pl~~~~ 167 (386)
.||.+ |..+..+... +..+|=...-....++.+..+++...+... ..+...+ .+++.++..++. ..
T Consensus 98 sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~ 175 (484)
T PRK11375 98 SYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FG 175 (484)
T ss_pred HHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-Hc
Confidence 99985 6555555542 344443333444566677766655432111 1111112 223344444554 45
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhhccccccCC-cccccc-CCCchhhhhHHHHHHHHHHHHhcC-CcchhhchhcCC
Q 016628 168 DINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN-VSYAYK-HTSSADYMFRVFNALGQISFAFAG-HAVALEIQATIP 244 (386)
Q Consensus 168 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~~~ 244 (386)
..+.++++..++....+..........+.+....+ .+.... ..........+..++...+=++.. -.+.+...+.
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy-- 253 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN-- 253 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc--
Confidence 66777777766665443322222222222211111 111110 001111234444555444444552 3466777776
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHhhhhhhh----hcccCCCCC--hhhhhccCCChHHHHHHHHHHHHHHHHh-hhc
Q 016628 245 STPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDVD--DNVLMALKRPGWLIAAANLMVVVHVIGS-YQV 317 (386)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fg~~~~--~~il~~~~~~~~~~~~~~i~~~i~~~~s-~pl 317 (386)
.|++++.. +....+..+...+...+|+.. ...+|+... .+++...+ +......+.+...++...+ ...
T Consensus 254 --~k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~-~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 254 --AHSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD-SLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred --cCChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 55554422 444455555555544444332 345554332 24444443 2233333445555555555 345
Q ss_pred cccchHHHHHHHHHh
Q 016628 318 FAMPVFHLLEGMMIK 332 (386)
Q Consensus 318 ~~~p~~~~~~~~~~~ 332 (386)
+.++.-..+..++++
T Consensus 329 N~ys~~~~l~~l~pk 343 (484)
T PRK11375 329 NIIPAGYQIAALAPT 343 (484)
T ss_pred hcccHHHHHHHhCcC
Confidence 788888887777764
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.11 E-value=0.00038 Score=62.75 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=93.4
Q ss_pred hhHHhhhhcccccccchHH---HHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccC
Q 016628 31 YSTFHCVTAMIGAGVLSLP---YAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGP 107 (386)
Q Consensus 31 ~~~~~li~~~iG~GiL~lP---~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 107 (386)
+-.+..+++++|+|.=+=- .-|.+-|+. |....++++.+-..++..+.+..++.+. .+|.|..+..+||+++|
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~k 82 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFAK 82 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHHH
Confidence 4456677899999976633 346677874 7788888888888888777776543333 39999999999998875
Q ss_pred eeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHH--HHHHHHHHhhhcCCCccchhhHHHH
Q 016628 108 WIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI--LIFGSLHFFLSQLPDINSVSSVSLA 178 (386)
Q Consensus 108 ~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~--~i~~~~~~pl~~~~~l~~l~~~s~~ 178 (386)
. .|+.+.+..++.++.-....+..+++.++- ..|. ++....+..+.++++.+.+-.++.+
T Consensus 83 i-~d~~iif~lf~~~vVM~AGags~~~e~~~l----------P~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 83 I-IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL----------PYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred H-HHHHHHHHHHHHHHHHhccchhHHHHHhCc----------cHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 5 888899999999998887777777665543 3343 3444444455566667766555443
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.08 E-value=0.00063 Score=66.86 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=93.0
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHH-HHHHHHHHHHhhc-cccCCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISW-VTTLNTMWQMINL-HECVPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~-~~~~~s~~~l~~~-~~~~~~~~~~~y~~l~~ 98 (386)
.-.|+.+++...+.+..+.+|++ .++.|-...+.|+. .......+ ...+.....+.+- ....++.+..|.+|+.+
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~ 114 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG--WVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLK 114 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 34788999999999999999886 77788877777863 21111111 1111111122211 00011223469999999
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHH
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLA 178 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 178 (386)
+-||++.-+++..+...+..++...+-+...+..++.+++ .+.....++..+++........++...++..+
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv~iYt~~GG~~av~~td~i 186 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSVLIYTTFGGFRAVALTDAI 186 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999755556666666555555444434444444433331 33344444555556677778899999999999
Q ss_pred HHHHHHHHHH
Q 016628 179 AAVMSLSYST 188 (386)
Q Consensus 179 ~~~~~~~~~~ 188 (386)
.....+....
T Consensus 187 Q~~v~~~~~~ 196 (471)
T TIGR02119 187 QGIVMFTGTT 196 (471)
T ss_pred HHHHHHHHHH
Confidence 8876554333
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.03 E-value=0.00088 Score=66.04 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=87.6
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHH--HHHHH-HHHHHHHHHhhccccCCCcccCCHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVL--VISWV-TTLNTMWQMINLHECVPGVRFDRYIDLG 97 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~--~~~~~-~~~~s~~~l~~~~~~~~~~~~~~y~~l~ 97 (386)
.-.|+.+++...+.+..+.+|++ .++.|....+.|+...+... ...+. ...+-...+.+..++ .+..|.+|+.
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l 114 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDML 114 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHH
Confidence 34778888999999988887774 77788766667763111111 01111 111111222222222 2356999999
Q ss_pred HHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHH
Q 016628 98 RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 98 ~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 177 (386)
++-||++..+....+...+..++....-+...+..++.++ ..+.....++..+++...+....++...++..
T Consensus 115 ~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~ 186 (483)
T PRK09442 115 RARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGFRAVVLTDA 186 (483)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999975444444444444333333333334444444333 12334444555666677788889999999999
Q ss_pred HHHHHHHHH
Q 016628 178 AAAVMSLSY 186 (386)
Q Consensus 178 ~~~~~~~~~ 186 (386)
+.....+..
T Consensus 187 iQ~~i~~~~ 195 (483)
T PRK09442 187 LQGIVMLVG 195 (483)
T ss_pred HHHHHHHHH
Confidence 887765543
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.02 E-value=0.00022 Score=68.74 Aligned_cols=150 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
.|+.+++...+.+..+.+|++ .++.|....+.|+. ++...+..........++..+..++ .+..|.+|..++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhC
Confidence 467888888899988888875 77888877777853 3332222222233333444443322 225699999999999
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHH
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM 182 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 182 (386)
++..+.+..+...+..+......+...+..++.+++ .+.....++...++......-.++...++..+..+.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 755666555555555555555555555555544432 233344445555556667788999999999998876
Q ss_pred HHH
Q 016628 183 SLS 185 (386)
Q Consensus 183 ~~~ 185 (386)
++.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 554
No 60
>PRK12488 acetate permease; Provisional
Probab=97.96 E-value=0.00052 Score=68.56 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred CcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHH-HHHHhhccccCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNT-MWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s-~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
-.|+.+++...+.+..+.++++ .++.|-...+.|+. ++...+ ...+.+.- ..++.+-.++ .+..|.+|..++-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a~~lr~---~g~~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYAL-GVLAGWPIILFLIAERLRN---LGKYTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHH-HHHHHHHHHHHHHHHHHHH---CCCcchHHHHHHH
Confidence 3678899999999999988886 78899877778863 332222 12222221 2333432222 2246999999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||.+.-|.+..+...+..+.....-+...+..++.++ ..+...-.++..+++..-+..-.++...++..+..
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 9854456666655544444333333333333333332 12333444455566666777889999999999988
Q ss_pred HHHHHH
Q 016628 181 VMSLSY 186 (386)
Q Consensus 181 ~~~~~~ 186 (386)
+..+..
T Consensus 212 ~im~~~ 217 (549)
T PRK12488 212 VLLLSG 217 (549)
T ss_pred HHHHHH
Confidence 765543
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.93 E-value=0.0015 Score=64.34 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=98.6
Q ss_pred CcccCchhhhHHhhhhcccc-cccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHh-hccccCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIG-AGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMI-NLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG-~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~-~~~~~~~~~~~~~y~~l~~~~ 100 (386)
..|+.+.+-..+...-+..+ .-++++|....+.|+...+..... ..........+. |..+...+++..|.+|+.++-
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~R 114 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGL-LIGAFLLWLLFAPRLRRLAKARGATTIPDFLEAR 114 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 45666777666666666666 679999999888997643333332 122222222222 222222334467999999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||++..|.+..+...+..+..+..-++..+..++..+. .+...-.++...++..-...-.++...++..+..
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 99546788888888888888877777777766543332 2223334445566666677778888888888777
Q ss_pred HHHHH
Q 016628 181 VMSLS 185 (386)
Q Consensus 181 ~~~~~ 185 (386)
..++.
T Consensus 187 ~im~i 191 (493)
T COG0591 187 LIMLI 191 (493)
T ss_pred HHHHH
Confidence 75443
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.0024 Score=60.89 Aligned_cols=254 Identities=17% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchh
Q 016628 94 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 173 (386)
Q Consensus 94 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 173 (386)
..+.+..||. +|.++..+...+.+.|-...-.+..++... ...+.+...+.++..+++...+.. ..|.+.
T Consensus 84 mi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~--------~~~~~~~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIG--------SGTGLPVWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred heeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccc--------cCCCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 4457889997 577888888888887777665555555411 112334455556666565555554 555555
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCc-chhhchhcCCCCCCCccc
Q 016628 174 SVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHA-VALEIQATIPSTPEKPSK 252 (386)
Q Consensus 174 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~-~~~~i~~~~~~~m~~p~~ 252 (386)
.++..+....+..........+... ...+.. ....+.++.++..+++...-.+.... ......+- +|+|+.
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~--~~~~~~--~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy----~~~~t~ 225 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSK--GGLDAL--WVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRY----APSPTP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--ccccee--eccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhh----cCCCch
Confidence 5555555544332222222222211 111111 11225566777777777776676664 44444454 444442
Q ss_pred cchhhhhhHHHHHHHHHHhhhhhhhhcccCCCC-ChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 253 ILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 253 ~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
++.-.....+......+-+.+|...-.+-|+.. ..+....+.+ ....+-+...++...+--..+|+..-.+.+...
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~ 302 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIP 302 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh
Confidence 232244456666666777788888888887766 3344444432 333345556666666666666766555555554
Q ss_pred hhcCCCCCchhhhhHHHHHHHHHHHHHHhc----ccchhhhhhccccc
Q 016628 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVTF----PFFGDLLGFFGGFG 375 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~v----p~~~~i~~l~Gs~~ 375 (386)
+- ++..+.+...+. ..+++|+.. .+++..+.++|...
T Consensus 303 ~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i 343 (442)
T COG1457 303 KL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFI 343 (442)
T ss_pred hh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 112222222221 444444444 45666666666543
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.81 E-value=0.0035 Score=62.68 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=87.2
Q ss_pred CcccCchhhhHHhhhhccccc-ccchHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGA-GVLSLPYAMAYLGWGPGTMVLVISWVTTL-NTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~-GiL~lP~~~~~~G~~~g~~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
-.|+.+++...+.+..+.+++ ..++.|-...+.|+- ++...+ ...+.+ ....++.+-.++ .+..|.+|..++-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr---~g~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN---LGRYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH---cCCccHHHHHHHH
Confidence 467788888888888887776 588899877778863 333222 122222 223334442222 2246999999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||.+.-|.+..+...+..+......+...+..++.++ ..+...-.++..+++..-...-.++...++..+..
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------GLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9865445555544444333333333333333333332 12333334555556666667778999999999887
Q ss_pred HHHHH
Q 016628 181 VMSLS 185 (386)
Q Consensus 181 ~~~~~ 185 (386)
+..+.
T Consensus 212 ~im~~ 216 (549)
T TIGR02711 212 VLLLF 216 (549)
T ss_pred HHHHH
Confidence 76554
No 64
>PRK09395 actP acetate permease; Provisional
Probab=97.69 E-value=0.0074 Score=60.49 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred CcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
-.|+.+++...+.+..+.+|++ .++.|-...+.|+. +....+-..+.......++.+-.+ +.+.+|++|..+.-|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r---~~g~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLR---NLGKYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHh---hCCCccHHHHHHHHc
Confidence 4678888888888888888875 78899877778874 322222111111122233333222 223579999999999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
|++.-|.+..+...+..+.....-+...+..++.++ ..+...-.++..+++..-+..-.++...++..+..+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 964445554444333333322222222233233222 233344455566666667777899999999998877
Q ss_pred HHHH
Q 016628 182 MSLS 185 (386)
Q Consensus 182 ~~~~ 185 (386)
.++.
T Consensus 215 im~~ 218 (551)
T PRK09395 215 LLLS 218 (551)
T ss_pred HHHH
Confidence 5554
No 65
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.62 E-value=0.0028 Score=61.22 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=135.2
Q ss_pred CCcccCchhhhHHhhh---hcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCV---TAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li---~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
+-+|.-++++.+..-. +..-|. .-++.+.....|...-...+++.+.....+..-|.|.+...|... ..+-=+.
T Consensus 45 ef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa 121 (550)
T KOG1289|consen 45 ELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAA 121 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHH
Confidence 3467777665544333 222221 223444555556555555567777777777788888665566432 2222234
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHc--cCCcccchhHHHHHHHHHHHhhhcCC--Cccchhh
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC--SHCKPLRQTFWILIFGSLHFFLSQLP--DINSVSS 174 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~~~~pl~~~~--~l~~l~~ 174 (386)
+.-+||+++.+.+++-+...+|-...........-+.++.... ++.....+.....+...+++-.+++. .-|.+++
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 4447888888888887777777665554443333333332222 12122222233333333333333332 4466777
Q ss_pred HHHHHHHHHHHHHHHHhhhhc--ccccc--CCccc--c-ccC-CCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCC
Q 016628 175 VSLAAAVMSLSYSTIAWAGSL--SHGRI--ENVSY--A-YKH-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST 246 (386)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~--~~~~~--~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~ 246 (386)
++.++....+...++..+... ..++. ...+. + .++ ..+..+-..+...+-.-.+++.|......+.+|
T Consensus 202 I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE---- 277 (550)
T KOG1289|consen 202 INSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE---- 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH----
Confidence 777777655543332222221 22221 11111 1 011 111223445666677788889999998899988
Q ss_pred CCCccccchhhhhhHHHHHHHHHHhhhhhhhhcccCC
Q 016628 247 PEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 283 (386)
Q Consensus 247 m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~ 283 (386)
-||+++ +.||++..+..+..++=..+-+.-..+-++
T Consensus 278 ~~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 278 TKNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred hcchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788877 789999888777666555444444444443
No 66
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.55 E-value=0.01 Score=56.73 Aligned_cols=288 Identities=12% Similarity=0.104 Sum_probs=144.4
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchH
Q 016628 55 LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 134 (386)
Q Consensus 55 ~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~ 134 (386)
.++..+++..++..++...-+.+....-. +...++.-+.|..||+ .|..+..+...+...|-...-....++.++
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~Gl~~~v~sR~~FG~-~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~ 100 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTGLSAMGSLKLSLGS-KGSVLPSLLNLLQLVGWTAVMIIVGAKAAS 100 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcCHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555554444433333333211 1234789999999997 477777777677776666666666788888
Q ss_pred HHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchh
Q 016628 135 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSAD 214 (386)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (386)
.+.+...+. .+...+..+..++..+.+. ...|.++++..++..+.........+....+...++ .... + .
T Consensus 101 ~~~~~~~~~---~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~---~--~ 170 (386)
T TIGR02358 101 LLGGRLFGE---ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE-LWNR---A--G 170 (386)
T ss_pred HHHHHhcCC---CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hcCC---C--C
Confidence 777654322 1122333444444444443 466777777777766544433332222222211111 1111 1 1
Q ss_pred hhhHHHHHHHHHHHHhcCC-cchhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhcc
Q 016628 215 YMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL 293 (386)
Q Consensus 215 ~~~~~~~~~~~~~fsf~~~-~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~ 293 (386)
+ .++..++....-.+... ...+...+. .|+|++ ..+....+..+...+...+|.....+.++....+++...
T Consensus 171 ~-~s~~~~~~~~~~~~~swa~~~~DysRy----~k~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~ 243 (386)
T TIGR02358 171 D-MSFAVAVELVIAMPLSWLPLIADYTRF----ARNPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA 243 (386)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHccchhhh----cCCCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence 1 23333333322211222 235566665 444433 335666777777788888888776666654222333222
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhhcCCCCCchhhhhHHHHHHHHHHHHHHhc--ccchhhhhhc
Q 016628 294 KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFF 371 (386)
Q Consensus 294 ~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~v--p~~~~i~~l~ 371 (386)
+.. ...-+...++...+-..+.++.-..+...+++- + +.++. ....++.++++... ..+...+++.
T Consensus 244 ---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~-~----~~~~~---~i~~ii~~~l~~~~~~~~f~~FL~~l 311 (386)
T TIGR02358 244 ---GLG-IPALLIILLSTVTTTFMDIYSAAISTGNLLPRL-K----VKHLA---IGVGVLGTLIALLFPVDKYENFLLLI 311 (386)
T ss_pred ---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-c----chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 123344455555556667777766666666421 1 11121 12222333333333 3567777777
Q ss_pred ccccc
Q 016628 372 GGFGF 376 (386)
Q Consensus 372 Gs~~~ 376 (386)
|...+
T Consensus 312 g~~~~ 316 (386)
T TIGR02358 312 GSVFA 316 (386)
T ss_pred HHHHH
Confidence 76544
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.50 E-value=5.5e-05 Score=72.85 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=80.4
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
.|+.+++...+.+..+.+|++ +++.|....+.|+. +....+............+.+-.+ +.+..|.+|+.++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLR---RSGAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHH---HTT--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhc---ccchhhhhhhhhhhcC
Confidence 477888999999999888885 78889888888875 333333333333334444555333 2235699999999999
Q ss_pred CCc-cCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 103 PKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 103 ~~~-g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
++. .+.+..+...+..+......+...+..++.++ ..+.....++..++.+.....-.++...+...+..+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 753 23433333333333333333344343333332 234455555566666667778889999999988887
Q ss_pred HHHH
Q 016628 182 MSLS 185 (386)
Q Consensus 182 ~~~~ 185 (386)
..+.
T Consensus 153 i~~~ 156 (406)
T PF00474_consen 153 IMII 156 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.47 E-value=0.013 Score=57.84 Aligned_cols=153 Identities=12% Similarity=0.031 Sum_probs=82.5
Q ss_pred CcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCC--CcccCCHHHHHHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVP--GVRFDRYIDLGRH 99 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~--~~~~~~y~~l~~~ 99 (386)
-.|+.+++...+.+..+.+++. .++.|....+.|+.. ........+........+.+-.++.. +.+..|.+|+.+.
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 4678888888888888777765 677887766778742 22222111222222333333222111 2345689999999
Q ss_pred hhCCCccCee---ehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHH
Q 016628 100 AFGPKLGPWI---VLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (386)
Q Consensus 100 ~~G~~~g~~~---~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 176 (386)
-||++ .+.+ ..+...+........-+...+..++.++ ..+.....++..++...-+..-.++...++.
T Consensus 113 Ryg~~-~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDK-SRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99964 2332 2222222111111222222233333322 1233444445555666666777899999999
Q ss_pred HHHHHHHHH
Q 016628 177 LAAAVMSLS 185 (386)
Q Consensus 177 ~~~~~~~~~ 185 (386)
.+..+..+.
T Consensus 184 ~iQ~~i~~~ 192 (487)
T TIGR02121 184 FVQGLLMFF 192 (487)
T ss_pred HHHHHHHHH
Confidence 988876554
No 69
>PRK10484 putative transporter; Provisional
Probab=97.41 E-value=0.0041 Score=61.91 Aligned_cols=158 Identities=11% Similarity=-0.021 Sum_probs=79.2
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
--.|+.+++-..+.+..+.++++ .++.|-...+.|+.. ........+......+.+.+-.+ +.+..|.+|+.++-
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~---r~~~~T~~e~l~~R 110 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYL---KSGITTIPDFLEER 110 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHHh
Confidence 34788999999999988888776 777887766678642 11111111111122233333222 23356899999999
Q ss_pred hCCCccCeeehhhHHHHhhhh-heeeeeechhchHHHHHHHccCCcccchhHHHH----HHHHHHHhhhcCCCccchhhH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGC-DIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL----IFGSLHFFLSQLPDINSVSSV 175 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~-~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~----i~~~~~~pl~~~~~l~~l~~~ 175 (386)
||++. +.+......+..... +...+...+..+..++.. ......+...-.. +..++...-+..-.++...++
T Consensus 111 yg~~~-~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~T 187 (523)
T PRK10484 111 YDKTT-RRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--SELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVS 187 (523)
T ss_pred cCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99764 333332222211111 111111112222222110 0001122121111 123334455667789999999
Q ss_pred HHHHHHHHHHH
Q 016628 176 SLAAAVMSLSY 186 (386)
Q Consensus 176 s~~~~~~~~~~ 186 (386)
..+..+.++..
T Consensus 188 D~iQ~vim~i~ 198 (523)
T PRK10484 188 DTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHH
Confidence 99988765543
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.38 E-value=0.017 Score=57.95 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
.-.|+.+++...+.+..+.++++ .++.|....+.|+. +....+-..........++.+-.++. +..|-+|.-++-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~---~~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF---GKYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCccHHHHHHHH
Confidence 35788999999999998888775 78888776677763 22222111111112234444433322 346889999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||++.-+++..+...+..+.....-+...+..++.+.+ .+...-.++..+++..-+..-.++...+.-.+..
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 98655456555554444444333333333433333321 2333444455555666667779999999988887
Q ss_pred HHHHH
Q 016628 181 VMSLS 185 (386)
Q Consensus 181 ~~~~~ 185 (386)
+.++.
T Consensus 177 iim~i 181 (552)
T TIGR03648 177 IVLIV 181 (552)
T ss_pred HHHHH
Confidence 65443
No 71
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.15 E-value=0.0033 Score=58.04 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhc-cccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINL-HECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~-~~~~~~~~~~~y~~l~~~~ 100 (386)
.+--..+.+..+.+=..++-|+|.+.=|-.-.+-||.++.+-.++-++..---.....-. .-|++++ |.+++.++.
T Consensus 47 vDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~---Si~~i~~~~ 123 (376)
T PF02554_consen 47 VDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK---SIGEIAGKY 123 (376)
T ss_pred CCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc---cHHHHHHHH
Confidence 344455667778888999999999999998899999999888877665554443333322 1233443 999999999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
.||+ ++.+..+..++.+.....++....++.+.+.-+ .....+..+...+.+-+..-|+--.+...+.+++
T Consensus 124 lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~--------~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~v 194 (376)
T PF02554_consen 124 LGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNSPW--------AATSSLLFIPIAILFGLLVYKRGGNLGPATIIGV 194 (376)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--------HHHHHHHHHHHHHHHhHhheecCCchHhhHHHHH
Confidence 9984 677788887777777776666555554432111 1223444555555555555455555666677766
Q ss_pred HHH
Q 016628 181 VMS 183 (386)
Q Consensus 181 ~~~ 183 (386)
...
T Consensus 195 vll 197 (376)
T PF02554_consen 195 VLL 197 (376)
T ss_pred HHH
Confidence 643
No 72
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.13 E-value=0.051 Score=51.43 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=40.4
Q ss_pred hhhhcccccccchHHHHH-HhhC--hhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeeh
Q 016628 35 HCVTAMIGAGVLSLPYAM-AYLG--WGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVL 111 (386)
Q Consensus 35 ~li~~~iG~GiL~lP~~~-~~~G--~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~ 111 (386)
.+..-.+|+|.|-.|-.. .++| |..+.+.+++.+...-....+ .-...+ .+|.++.++ +||+.|....+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g---G~~~~l~~~-~g~~f~~lf~~ 74 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG---GGYDSLSAR-IGKVFGILFTV 74 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC---CCHHHHHHH-hChHHHHHHHH
Confidence 456678999999999653 3444 556666666666555443333 111222 277887554 57777755333
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.07 E-value=0.047 Score=54.11 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=83.7
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhh-cccc-CCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMIN-LHEC-VPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~-~~~~-~~~~~~~~y~~l~~ 98 (386)
--.|+.+++...+.+..+.+++. .++.|....+.|+.. ....+...+........+.+ .... ..+.+..|.+|..+
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 34788999999999998888876 677898777888642 21111111111111222221 1100 11223468899999
Q ss_pred HhhCCCccCee---ehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhH
Q 016628 99 HAFGPKLGPWI---VLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSV 175 (386)
Q Consensus 99 ~~~G~~~g~~~---~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 175 (386)
+-||++ .+.+ ..+...+.....+..-+...+..++.++ ..+.....++...++..-+..-.++...+.
T Consensus 116 ~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~aV~~T 186 (502)
T PRK15419 116 GRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAATILYTFIGGFLAVSWT 186 (502)
T ss_pred HHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999963 3332 2222222222211211222223232222 233344455566666777788899999999
Q ss_pred HHHHHHHHHH
Q 016628 176 SLAAAVMSLS 185 (386)
Q Consensus 176 s~~~~~~~~~ 185 (386)
..+..+.++.
T Consensus 187 D~iQ~~imi~ 196 (502)
T PRK15419 187 DTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHH
Confidence 9998876554
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.95 E-value=0.25 Score=47.73 Aligned_cols=235 Identities=13% Similarity=0.043 Sum_probs=112.1
Q ss_pred cCCHHHHHHHhhCCCccCe--eehhhHHHHhhhhheeeeeechhchHHHHHHHccCCc-------ccchhHHHHHHHHHH
Q 016628 90 FDRYIDLGRHAFGPKLGPW--IVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK-------PLRQTFWILIFGSLH 160 (386)
Q Consensus 90 ~~~y~~l~~~~~G~~~g~~--~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~-------~~~~~~~~~i~~~~~ 160 (386)
..+|+.+.+..||-+.+++ +........-+|.-+ -..+..++-++....+... .........+..++.
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 4699999999999642222 122222222333322 1334445555555443210 112222233333332
Q ss_pred H---hhhcCCCccchhhHHHHHHHHHHHHHHHHhhhhcc--ccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCC-c
Q 016628 161 F---FLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLS--HGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGH-A 234 (386)
Q Consensus 161 ~---pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~ 234 (386)
. .+...+.+++++++-.++..++.+.+.-....... ++.....+.+......+..++.+.......+=.|..- -
T Consensus 179 W~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~l 258 (497)
T COG1953 179 WVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLAL 258 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 2 34556788888888777766555433333332222 2211111111001112223333333333333222222 5
Q ss_pred chhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhh----hhhhhcccCCCCC--hhhhhccCCChHHHHHHHHHHH
Q 016628 235 VALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV----ALIGYWAFGQDVD--DNVLMALKRPGWLIAAANLMVV 308 (386)
Q Consensus 235 ~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~----g~~gy~~fg~~~~--~~il~~~~~~~~~~~~~~i~~~ 308 (386)
|.|...+. -|+|+... +.-.++..+...+..++ +..++..||+..- .+++.++++......++.+.++
T Consensus 259 N~~DFsRf----a~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~ 332 (497)
T COG1953 259 NIPDFTRF----AKSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFA 332 (497)
T ss_pred CCchhhcc----cCChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHH
Confidence 77777776 55555433 33345555555555544 4457889999844 5888888754333313333333
Q ss_pred HH-HHHhhhccccchHHHHHHHHHhh
Q 016628 309 VH-VIGSYQVFAMPVFHLLEGMMIKR 333 (386)
Q Consensus 309 i~-~~~s~pl~~~p~~~~~~~~~~~~ 333 (386)
+. +-....-+..+.-.-+..++++.
T Consensus 333 iati~~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 333 VATISTNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred HHHHhhhHHhccCChHHHHHHhcccc
Confidence 33 33444555566655556666543
No 75
>PRK11017 codB cytosine permease; Provisional
Probab=96.87 E-value=0.061 Score=51.72 Aligned_cols=206 Identities=15% Similarity=0.031 Sum_probs=90.4
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhch
Q 016628 54 YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 133 (386)
Q Consensus 54 ~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l 133 (386)
..++..+++..++...+...-..+....-. +...++.-+.+..||.+ |..+..+...+...|-...-....++.+
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~----k~G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l 112 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGA----KTGLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPV 112 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 355555565555544444333333333211 12348899999999974 6665554444444432222222223322
Q ss_pred HHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCch
Q 016628 134 KKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSA 213 (386)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 213 (386)
+... + .+...+.+++.++..+.... ..+.++++..++........+...+....+....+.-... .+
T Consensus 113 ~~~~----~----~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~----~~ 179 (404)
T PRK11017 113 VKAT----G----LDINLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAI----VP 179 (404)
T ss_pred HHHh----C----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcC----CC
Confidence 2221 1 12233444455555554443 3444555555444433222222221111111000000000 01
Q ss_pred hhhhHHHHHHHHHHHHhcCC-cchhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhcccCC
Q 016628 214 DYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 283 (386)
Q Consensus 214 ~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~ 283 (386)
.+...+..++...+=.+... .+.+...+. .|++++ . ......+..+...+...+|...-...++
T Consensus 180 ~~~~~~~~a~~~~~g~~~~~~~~~~DysRy----~k~~~~-~-~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 180 AEPLDFSAALTLVVGSFISGGTLTADFVRF----GRSAKI-A-VLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred CCcccHHHHHHHHHHHHHHhHhcCCChHhh----ccCccc-e-eehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 12234555555544444443 566676665 444433 1 1334455555555566666655555554
No 76
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.61 E-value=0.0086 Score=57.23 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=75.8
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhH----HHHHHHHHHHHHHHHHHHhhccccCCCcccCCH-----
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPG----TMVLVISWVTTLNTMWQMINLHECVPGVRFDRY----- 93 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g----~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y----- 93 (386)
+++.|.+|+.+....+.+|+| ++.+|.+.+..| ..+ ++..++.+...+.-..+..+. ++.+++ .+|
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~y-r~~~~~--g~~~GGP~ 119 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKY-RERDAD--GVFRGGPM 119 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHe-eeeCCC--CCEecChH
Confidence 356899999999999999998 999999977666 346 333333332223223333332 222221 236
Q ss_pred HHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchh
Q 016628 94 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 173 (386)
Q Consensus 94 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 173 (386)
..+-+...|||.|.. ..++ .+..++.. ...-.+.+.+.++... ..+ .+...+...++.-......+|.+.
T Consensus 120 yyi~~gl~~k~lg~l-fa~~-~i~~f~~~---~~~Q~nsi~~~~~~~~----~~~-~~v~~i~l~~l~~~vi~GGik~Ia 189 (425)
T TIGR00835 120 YYIKKGLGMRWLAVL-FAVF-LIASFGIG---NMVQANAIASALSNAF----NVP-KLVTGIVLTVLTALIIFGGLKRIA 189 (425)
T ss_pred HHHHHHhCccHHHHH-HHHH-HHHHHhhh---HHHHHHHHHHHHHHHc----CCc-HHHHHHHHHHHHHHHHhcCchHHH
Confidence 777666666644422 2222 22222211 1122233333333211 111 223333333444444556788888
Q ss_pred hHHHHHHHHHH
Q 016628 174 SVSLAAAVMSL 184 (386)
Q Consensus 174 ~~s~~~~~~~~ 184 (386)
.++..-+-.+.
T Consensus 190 ~v~~~lvP~m~ 200 (425)
T TIGR00835 190 KISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHHH
Confidence 77776655433
No 77
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0046 Score=60.01 Aligned_cols=236 Identities=16% Similarity=0.163 Sum_probs=125.7
Q ss_pred CCcccCchhhhHH-----hhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHH
Q 016628 22 EPTRRAKWWYSTF-----HCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDL 96 (386)
Q Consensus 22 ~~~~~~s~~~~~~-----~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l 96 (386)
+++-+-++++.++ |+.+-++ .|-+++...|+|...+++++.++..++..|..--.....+..-+.--.|. +
T Consensus 25 ~~~v~fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-l 100 (643)
T KOG2083|consen 25 KGPVLFGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-L 100 (643)
T ss_pred CCceEEeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-E
Confidence 3344445555544 3444333 67799999999999999988887777766653322222111100001232 2
Q ss_pred HHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHH
Q 016628 97 GRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 176 (386)
Q Consensus 97 ~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 176 (386)
..+.+|+.+| -...+...+.+.-.+..|.+..+|.+..+++.... .-.+. ...+...+++.+ +.-...|.+
T Consensus 101 is~slg~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~--~~i~g--i~~vt~~ill~i----~~ag~~w~~ 171 (643)
T KOG2083|consen 101 ISRSLGPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESK--EMIDG--IGSVTVLILLAI----NVAGVEWEA 171 (643)
T ss_pred EEeccccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH--HHhcc--hhHHHHHHHHHh----hhccchhHH
Confidence 3445566665 34555555666667778999999999888877431 10111 111222222222 334555666
Q ss_pred HHHHHHHHHHHHHHhhhh----ccccccC-Cc-cc--cccCCCchhhh---hHHHHHHHHHHHHhcCCcchhhchhcCCC
Q 016628 177 LAAAVMSLSYSTIAWAGS----LSHGRIE-NV-SY--AYKHTSSADYM---FRVFNALGQISFAFAGHAVALEIQATIPS 245 (386)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~----~~~~~~~-~~-~~--~~~~~~~~~~~---~~~~~~~~~~~fsf~~~~~~~~i~~~~~~ 245 (386)
.+.....++.++.+.-+. +..++.. +. .+ +........++ ..++..|++++-+..|.-.=..+..+
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGd--- 248 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGD--- 248 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCC---
Confidence 655553322222111111 1111000 00 00 00000001112 36667778888888666444555666
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHhhhhh
Q 016628 246 TPEKPSKILMWKGALGAYFVNAICYFPVAL 275 (386)
Q Consensus 246 ~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~ 275 (386)
.|+|++ .+|+....+..+...+|..+-.
T Consensus 249 -L~~Pq~-~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 249 -LKDPQK-AIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred -CCCchh-hcccchhhhhhhhhhhhhhhhh
Confidence 899988 7889999999999999975533
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.53 E-value=0.0037 Score=60.88 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=64.2
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHh--hChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAY--LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~--~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
++|+.+.++.+..-.+..+....+.+...... .++..+++..++..++...-..+....-.+ .+ .++.-+.+..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r-~G---l~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR-TG---LPTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC-C------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc-cC---CCchhcchhc
Confidence 45555666666666666665555555444322 344556666666555554444444442222 22 3678889999
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 140 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~ 140 (386)
||. .|..+..+...+...|-...-....++.+..+.+..
T Consensus 81 FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 81 FGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp S-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 996 588877777777777766666667788888777654
No 79
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.11 E-value=0.54 Score=45.03 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=92.4
Q ss_pred cCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCc
Q 016628 90 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 169 (386)
Q Consensus 90 ~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 169 (386)
.+|++|....-++.+.-|++..+...+-.+--.++-++-.+..+.-+++ .+...-.++..+++..-..+-.+
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~vgv~ig~ilm~~Yvv~GGM 174 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYHVGVVIGGILMMVYVVLGGM 174 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCceeehhhHhHHHHHHHHhcch
Confidence 4699999888887666666555554443333333333344433333332 22233445556666666677889
Q ss_pred cchhhHHHHHHHHHHH-HHHHHhhhhcc-ccccC---------Cccc----cccCCCchhhhhHHHHHHHHHHHHhcCCc
Q 016628 170 NSVSSVSLAAAVMSLS-YSTIAWAGSLS-HGRIE---------NVSY----AYKHTSSADYMFRVFNALGQISFAFAGHA 234 (386)
Q Consensus 170 ~~l~~~s~~~~~~~~~-~~~i~~~~~~~-~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~fsf~~~~ 234 (386)
+...|+..+.-+..+. +.+..+..... .+.+. .... ..++.....++.++....-..++...+-+
T Consensus 175 ~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLP 254 (529)
T COG4147 175 KATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLP 254 (529)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCC
Confidence 9999999887765443 22222211111 11110 0000 00011112344555555555556655553
Q ss_pred -chhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhhhc
Q 016628 235 -VALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 279 (386)
Q Consensus 235 -~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~ 279 (386)
.+...+.. |+-|..+|.+.++..+...+|+..-+.|+.
T Consensus 255 Hil~RFfTv-------p~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 255 HILMRFFTV-------PDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred eEEEEEEec-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 344444488899999999999976665554
No 80
>PRK15015 carbon starvation protein A; Provisional
Probab=96.09 E-value=0.026 Score=55.87 Aligned_cols=147 Identities=20% Similarity=0.098 Sum_probs=86.8
Q ss_pred cCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhc-cccCCCcccCCHHHHHHHhhCCC
Q 016628 26 RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINL-HECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 26 ~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~-~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
..+.+-.+-|=..++-|+|.+.=|..-.+.||.++.+-.++-.++.---.....-. ..|.+++ |.+++.++-.|++
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr---Sig~ia~~~iG~~ 158 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR---SLGELVKEEMGPT 158 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc---cHHHHHHHHhhHH
Confidence 33445567788889999999999999999999999888877655544333333221 2233443 9999999999984
Q ss_pred ccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcC-CCccchhhHHHHHHHHH
Q 016628 105 LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL-PDINSVSSVSLAAAVMS 183 (386)
Q Consensus 105 ~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~-~~l~~l~~~s~~~~~~~ 183 (386)
++.+..+.+++.+.....++..++.+.+ .. + ++-....++.+...+++-..+- ++.......+.++.++.
T Consensus 159 -~~~lfli~i~~iliiviAvfalvvv~al----~~---s-P~~~fsv~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvll 229 (701)
T PRK15015 159 -AGVIALVACFMIMVIILAVLAMIVVKAL----TH---S-PWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFL 229 (701)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh---C-cHHHHHHHHHHHHHHHHHHHheeecCCchHHHHHHHHHHH
Confidence 6666666666665555554444433332 22 0 1111222333333333333222 24555556677776644
Q ss_pred H
Q 016628 184 L 184 (386)
Q Consensus 184 ~ 184 (386)
+
T Consensus 230 ~ 230 (701)
T PRK15015 230 I 230 (701)
T ss_pred H
Confidence 3
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.95 E-value=0.48 Score=45.24 Aligned_cols=212 Identities=14% Similarity=0.086 Sum_probs=98.9
Q ss_pred ccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhc--cccCCCcccCCHHHHHHHhh
Q 016628 25 RRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINL--HECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 25 ~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~--~~~~~~~~~~~y~~l~~~~~ 101 (386)
.-.|...-++..+++.+|-| +.-.||...+.|-..-++..++.-++.-.. .++.|- -++.+++...+|.++..
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiP-lli~Ef~iGr~~~~~~~~a~~~l~~--- 82 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIP-LLLAEFAIGRRGRKNAVGAFRKLAP--- 82 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHH-HHHHHHHhhhhcCCChhHHHHHhcc---
Confidence 34556667888899999999 999999988888542222222222221111 223331 11222222346666554
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCc-----------ccch-hHHHHHHHHH---HHhhhcC
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK-----------PLRQ-TFWILIFGSL---HFFLSQL 166 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~-----------~~~~-~~~~~i~~~~---~~pl~~~ 166 (386)
+|+ .+++-++ .....+..+.-|.++.+=.+..+.....+... .... .........+ +--+...
T Consensus 83 ~~~-~~~~G~~-gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 KKK-WEWIGWF-GVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred Ccc-chhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 332 3443333 23444555555666666555555544432110 0011 1111111111 1112223
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHhhhhcc-ccccCCccccc-cCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhc
Q 016628 167 PDINS-VSSVSLAAAVMSLSYSTIAWAGSLS-HGRIENVSYAY-KHTSSADYMFRVFNALGQISFAFAGHAVALEIQAT 242 (386)
Q Consensus 167 ~~l~~-l~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~ 242 (386)
|..++ ..+.+.+-+-..++..++.+.+... .|..++.++-. |++..-.++..+..+++...|+-.--.-..-.|++
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsS 239 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSS 239 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333 4555554444333333344444432 23333332211 11122234677889999999998766433444444
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.23 E-value=0.98 Score=42.68 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=57.5
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhch
Q 016628 54 YLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 133 (386)
Q Consensus 54 ~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l 133 (386)
+.|+-. +..+++..++.+...+.-.|... ..++ +..|..++-+||+++ +...+...+........-+...+.-+
T Consensus 10 ~~Gy~L-lw~lll~~~~~~~~q~~~~R~~~-~Tg~---~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 10 QYGYSL-LWVLLLSNLLKYVFQEMAARLGI-VTGK---GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred HHCHHH-HHHHHHHHHHHHHHHHHHHHHhh-hcCC---ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 22223333344433444444322 2333 677888888887654 44555544444444443333333222
Q ss_pred HHHHHHHccCCcccchhHHHHHHHHHHHhhhc--CCCccchhhHHHHHHHHH
Q 016628 134 KKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDINSVSSVSLAAAVMS 183 (386)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~~s~~~~~~~ 183 (386)
+.+. ..+...+.++..+..+.+.+ .++.|.+..+...-...+
T Consensus 84 ~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 84 NLLF--------GIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVM 127 (358)
T ss_pred Hhhc--------CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2222 23345566555555555444 667788777776555543
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.77 E-value=0.38 Score=47.97 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhhHHHHHHHHHHhhhhhhh
Q 016628 217 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 277 (386)
Q Consensus 217 ~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~~~~~~~~~~y~~~g~~g 277 (386)
.++...|++++-+=.|.-. -+.|..|+|+|+| .+||....+....+++|+++....
T Consensus 294 ~~F~~~FgV~F~g~tGimA----GAnMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMA----GANMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred eehhhhheeeeccchhhhc----CCCcCccccCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 3455566665544444322 3445566999999 799999999999999999876653
No 84
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.54 E-value=0.16 Score=49.42 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=67.7
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhc-cccCCCcccCCHHHHHHHhh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINL-HECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~-~~~~~~~~~~~y~~l~~~~~ 101 (386)
+--..+.+-.+-+=..++-|+|.+.=|-.-++.||.++.+-.++-..+.---...+.-- ..|+.++ |.++++++-+
T Consensus 48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~---Si~~ia~~~l 124 (575)
T COG1966 48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK---SIGEIAGKYL 124 (575)
T ss_pred ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc---cHHHHHHHHh
Confidence 33345566778888889999999999999999999999888777655554333333321 2233443 9999999999
Q ss_pred CCCccCeeehhhHHHHhhhhheee
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVY 125 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y 125 (386)
|++. +.+..+...+.......++
T Consensus 125 G~~a-~~~~~~~~l~iliiv~Avf 147 (575)
T COG1966 125 GRTA-KVFFLLLALILLILVGAVF 147 (575)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHH
Confidence 9865 4555555555544444443
No 85
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.36 E-value=0.45 Score=45.52 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=51.6
Q ss_pred CCCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHH---HHHHHHHhhccccCCCccc--CCHH
Q 016628 21 GEPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTT---LNTMWQMINLHECVPGVRF--DRYI 94 (386)
Q Consensus 21 ~~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~---~~s~~~l~~~~~~~~~~~~--~~y~ 94 (386)
++++++.|.+|+.+..+.+.+|+| +.....+..-.|. .++.-|-+.+++. -|+=..|...+++..++.+ -.=.
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 346678999999999999999999 8889999986664 3444444444433 3333444443332221110 0113
Q ss_pred HHHHHhhCCCcc
Q 016628 95 DLGRHAFGPKLG 106 (386)
Q Consensus 95 ~l~~~~~G~~~g 106 (386)
...++.+|+||.
T Consensus 92 yyi~~gl~~k~l 103 (416)
T PF01235_consen 92 YYIEKGLGSKWL 103 (416)
T ss_pred HHHHHHhccchH
Confidence 345777886653
No 86
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.22 E-value=4.1 Score=40.72 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.8
Q ss_pred chhhhHHhhhhcccccc-cchHHHHHHhhCh
Q 016628 28 KWWYSTFHCVTAMIGAG-VLSLPYAMAYLGW 57 (386)
Q Consensus 28 s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~ 57 (386)
|..+-++..++..+|.| +.-.|+-..+-|-
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG 36 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGG 36 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 45667888899999998 9999998666663
No 87
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=92.64 E-value=1.9 Score=41.33 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=68.4
Q ss_pred cccCchhhhHHhhhhcccccccchHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHH-hhccccCCCcccCCHHHHHHHhh
Q 016628 24 TRRAKWWYSTFHCVTAMIGAGVLSLPY-AMAYLGWGPGTMVLVISWVTTLNTMWQM-INLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~GiL~lP~-~~~~~G~~~g~~~~~~~~~~~~~s~~~l-~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+++.+.....+....+-+|.|-++--. +=++.|+-..+++++ ..+..+-...+ .|.- ...++ +..|..++.+
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill--s~l~~~~~Q~~~arLg-ivTG~---~laq~ir~~y 87 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL--SNLMAYILQELSARLG-IVTGK---GLAEAIRERY 87 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHhCC---cHHHHHHHHc
Confidence 344555666666667777776554332 234555543332222 22222222111 1111 12333 7788889999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
+|+++ +..++...+....++++-....+--++-++. .+..+-.++..+..+.....++.+.+..+...-..
T Consensus 88 ~~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~ 158 (416)
T COG1914 88 LPGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFG--------IPLIIGAVITAVDVLIILLLKGYRLLERVVLILGL 158 (416)
T ss_pred cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 98765 5566665565555555544443333322221 11223333444444444445445555555444333
No 88
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=90.16 E-value=0.78 Score=43.52 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCcc
Q 016628 91 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 170 (386)
Q Consensus 91 ~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 170 (386)
.-..++++..||+ .|..+..+.+.+.|+.+++......+|+.+++.+. .+.+.|.++..+..+.++.. +++
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------~~y~~~v~~~~l~s~~ia~~-Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------LSYKTWVIVFTLFSFIVANL-GLT 325 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHh-CHH
Confidence 3567889999997 68999999999999999999998888887766542 44566776666665555544 444
Q ss_pred chhhHHH
Q 016628 171 SVSSVSL 177 (386)
Q Consensus 171 ~l~~~s~ 177 (386)
.+-..+.
T Consensus 326 ~Ii~~~~ 332 (378)
T TIGR00796 326 QIISISI 332 (378)
T ss_pred HHHHHHH
Confidence 4444333
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=89.80 E-value=0.98 Score=43.43 Aligned_cols=74 Identities=14% Similarity=0.358 Sum_probs=57.6
Q ss_pred CHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccc
Q 016628 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (386)
Q Consensus 92 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 171 (386)
-..++++..+|+ .|..+..+.+.+.|+-+++.-....+|+.++..+. .+.+.|..+.+++-+.++.+ .++.
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------isY~~~v~i~~i~S~~ian~-Gl~~ 332 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------ISYKVWVIIFTIFSFIIANL-GLDQ 332 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHHHHHHHHHHHh-CHHH
Confidence 356678999997 79999999999999999999999999998888763 45578888777776666655 3443
Q ss_pred hhh
Q 016628 172 VSS 174 (386)
Q Consensus 172 l~~ 174 (386)
+-.
T Consensus 333 Ii~ 335 (427)
T PF05525_consen 333 IIK 335 (427)
T ss_pred HHH
Confidence 333
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=88.50 E-value=25 Score=34.03 Aligned_cols=70 Identities=23% Similarity=0.331 Sum_probs=41.5
Q ss_pred chhhhHHhhhhcccccccchHHHHHH-hhC--hhhHHHHHHHHHHHHHHHH-HHHhhccccCCCcccCCHHHHHHHhhCC
Q 016628 28 KWWYSTFHCVTAMIGAGVLSLPYAMA-YLG--WGPGTMVLVISWVTTLNTM-WQMINLHECVPGVRFDRYIDLGRHAFGP 103 (386)
Q Consensus 28 s~~~~~~~li~~~iG~GiL~lP~~~~-~~G--~~~g~~~~~~~~~~~~~s~-~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 103 (386)
.....-+.+..-..|+|=|-.|-... ++| |+.+.+-+++.+..--.-. ..+.+ ..+ ++++++++. ||
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~----~~~----~~~~l~~~v-~~ 74 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK----SGG----GIEDLASRV-GP 74 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----cCC----CHHHHhccc-Cc
Confidence 34556677888899999888887643 333 6667777666664432222 22222 222 677776655 45
Q ss_pred Ccc
Q 016628 104 KLG 106 (386)
Q Consensus 104 ~~g 106 (386)
+.|
T Consensus 75 ~f~ 77 (427)
T PF05525_consen 75 KFA 77 (427)
T ss_pred HHH
Confidence 454
No 91
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.99 E-value=20 Score=35.94 Aligned_cols=240 Identities=11% Similarity=0.079 Sum_probs=115.7
Q ss_pred CcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccc-cCCCcccCCHHHHHHHh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE-CVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~-~~~~~~~~~y~~l~~~~ 100 (386)
..|+..++-..+.++.+.+|++ ++++|..-.+.|.- ...+...+++. ...+....- ...+.+..+-+|..++-
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~--~~~~~~~~l~~---~~~~~~~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQ--YWFFEWNALLS---VLLLGWIFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHH--HHHHHHHHHHH---HHhhheEEEEEEEecCeeehhHHHHHH
Confidence 3677888888899999999887 88999887777753 22222222222 222222111 11122234556667888
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||+. .+....+...+..+--...++..-+-.+++... .+......+...+..--...-.++..-|+=.+..
T Consensus 118 f~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred hccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 8864 555555544444443333333222222222221 1112222223333333445557777888888887
Q ss_pred HHHHHHHHHHhhhhccc-ccc--------CC-----c-cccccCCCchhhhhHHH-HHHHHHHHHhcCCcchhhchhcCC
Q 016628 181 VMSLSYSTIAWAGSLSH-GRI--------EN-----V-SYAYKHTSSADYMFRVF-NALGQISFAFAGHAVALEIQATIP 244 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~-~~~--------~~-----~-~~~~~~~~~~~~~~~~~-~~~~~~~fsf~~~~~~~~i~~~~~ 244 (386)
..++.-...+......+ |.. ++ . ++..+... .+.++.++ .....-...++.+.+...=+-.
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~v-r~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~ls-- 265 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTV-RHTPWSLLFGGTIMWLSYYGVNQLIVQRYLS-- 265 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcc-cccchhHhcCCcHHHHHHHhhhHHHHhHHhc--
Confidence 76665444444433211 100 00 0 11111111 12223333 3334444455555554443333
Q ss_pred CCCCCccccchhhhhhH---HHHHHHHHHhhhhhhhhcccCC
Q 016628 245 STPEKPSKILMWKGALG---AYFVNAICYFPVALIGYWAFGQ 283 (386)
Q Consensus 245 ~~m~~p~~~~~~~~~~~---~~~~~~~~y~~~g~~gy~~fg~ 283 (386)
-|+.++.++.... ...+...++...|+..|..|-|
T Consensus 266 ----l~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 266 ----LPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred ----cccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 3444344455543 3344445556778887877743
No 92
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=83.28 E-value=2.6 Score=42.79 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=88.6
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccc--cCCCcccCCHHHHHHHh
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHE--CVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~l~~~~ 100 (386)
.+-++......--+..+.|.= .+-|-+...-+|...+.++.+++++.+..+..-+..... ..++.. +|.-+ .+.
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmI-SRs 188 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMI-SRS 188 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEE-ecc
Confidence 444445555555566666654 445778888899999999999998888877766655321 122221 56554 456
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchH-HHHHHHc--cCCc--------ccchhHHHHHHHHHHHhhh--cCC
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK-KFVEMAC--SHCK--------PLRQTFWILIFGSLHFFLS--QLP 167 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~-~~~~~~~--~~~~--------~~~~~~~~~i~~~~~~pl~--~~~ 167 (386)
+||.+| -.+.+|..+-.--....|++-.-+.+- .+++... +... ..+-+.+..++.+++.... =+|
T Consensus 189 LGPEFG-gAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 189 LGPEFG-GAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred cCcccc-ceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 687777 456666555554455556665554432 2333322 1000 1233445444444433322 345
Q ss_pred CccchhhHHHHHHHHHHHHH
Q 016628 168 DINSVSSVSLAAAVMSLSYS 187 (386)
Q Consensus 168 ~l~~l~~~s~~~~~~~~~~~ 187 (386)
-.+.++.++..+++.+++.+
T Consensus 268 ~Vnk~A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAI 287 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55566666666666555433
No 93
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=82.99 E-value=47 Score=32.12 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred CCcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHH---HHHHHHHHHHHHHhhccccCCCccc---CCHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLV---ISWVTTLNTMWQMINLHECVPGVRF---DRYI 94 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~---~~~~~~~~s~~~l~~~~~~~~~~~~---~~y~ 94 (386)
+++++.|.+|+.+....+.+|+| +-....+.+-.|.. ++.-+= +.|..+-|.=..|...++++.++.. -+ .
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP-~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGP-A 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCCh-H
Confidence 56788999999999999999999 77899998866642 333333 3344555555555555443222111 11 1
Q ss_pred HHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhh
Q 016628 95 DLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSS 174 (386)
Q Consensus 95 ~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 174 (386)
...++-+|.+|-..+..+. .+..+|. ..-..-++.+.+.+++.. ..+ .+..-+...++..+.....+|+++.
T Consensus 136 yYi~kGl~~r~l~v~FA~~-li~afg~--i~n~vQ~NsIa~a~~~af----~~~-~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFA-LIAAFGF--IGNGVQSNSIASALANAF----GIP-PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred HHHHhhcCCcHHHHHHHHH-HHHHHHh--hcchhhHHHHHHHHHHhc----CCc-HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 2346666643321222211 1222221 111122233333333311 111 2334444455555666777888777
Q ss_pred HHHHHHH-HHHHHHHH
Q 016628 175 VSLAAAV-MSLSYSTI 189 (386)
Q Consensus 175 ~s~~~~~-~~~~~~~i 189 (386)
++..-+= +.+.|+..
T Consensus 208 v~~~vVPfMA~~Yi~~ 223 (452)
T COG1115 208 VSSKVVPFMAILYVLV 223 (452)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7665443 33334443
No 94
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=82.05 E-value=46 Score=31.40 Aligned_cols=247 Identities=14% Similarity=0.082 Sum_probs=123.2
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHH-HHHHHHHHHHhhcccc-CCCcccCCHHHHHHHh
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISW-VTTLNTMWQMINLHEC-VPGVRFDRYIDLGRHA 100 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~-~~~~~s~~~l~~~~~~-~~~~~~~~y~~l~~~~ 100 (386)
.|+.+-+-..++...+-+++. .++=|.+.-+.|. |++++...= ...+.+.-.+.+-..+ .++....+..|+-++-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHH
Confidence 566666666677776777664 6666777666774 443333322 2233333344442211 1112234778887777
Q ss_pred hCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 101 FGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 101 ~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
+..+.-.|...+.+.+...+..++-.+-.++.++... ..+...-.++++..+..-...-..|.....-.+.-
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG 187 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQG 187 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------CCCchhhHHHHHHHHHHHHhhcceeeeehHHHHHH
Confidence 6544445666666666666666666666666554443 34445556667776666666667776666665555
Q ss_pred HHHHHHHHHHhhhhccc--ccc------CCccccccCCCchh---hhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCC
Q 016628 181 VMSLSYSTIAWAGSLSH--GRI------ENVSYAYKHTSSAD---YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEK 249 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~--~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~ 249 (386)
..++.-.++.....++. |.. ++.|.+.-.+.... ++.-..+..-..+++-.|++...- +- |.-
T Consensus 188 ~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~v--r~----ia~ 261 (473)
T COG4145 188 LVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAV--RC----IAF 261 (473)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHH--HH----Hhc
Confidence 54443222222211211 100 11121110001111 111122233334555556543221 21 222
Q ss_pred ccccchhhhhhHHHHHHHHHHh---hhhhhhhcccCCCCC
Q 016628 250 PSKILMWKGALGAYFVNAICYF---PVALIGYWAFGQDVD 286 (386)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~y~---~~g~~gy~~fg~~~~ 286 (386)
++.+.+++....+..+..++-+ +.|..|.....|-+.
T Consensus 262 kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 262 KDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred cchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 3333555666655554444433 678888888877554
No 95
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=80.40 E-value=59 Score=31.58 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=42.2
Q ss_pred chhhhHHhhhhcccccccchHHHHHH-hhC--hhhHHHHHHHHHHHH-HHHHHHHhhccccCCCcccCCHHHHHHHhhCC
Q 016628 28 KWWYSTFHCVTAMIGAGVLSLPYAMA-YLG--WGPGTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGP 103 (386)
Q Consensus 28 s~~~~~~~li~~~iG~GiL~lP~~~~-~~G--~~~g~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 103 (386)
.....-+.+..-..|+|=|-.|-... ++| |..+.+-+++.+..- ..+...+.+ ..+ +++++.++. ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~----~~g----~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK----VGG----GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----cCC----CHHHHhhhc-ch
Confidence 45667788889999999888887644 344 556666665555332 222222222 222 677877666 55
Q ss_pred Ccc
Q 016628 104 KLG 106 (386)
Q Consensus 104 ~~g 106 (386)
+.|
T Consensus 80 ~f~ 82 (439)
T PRK15433 80 VAG 82 (439)
T ss_pred HHH
Confidence 555
No 96
>PHA02764 hypothetical protein; Provisional
Probab=79.73 E-value=34 Score=31.49 Aligned_cols=89 Identities=15% Similarity=0.010 Sum_probs=49.2
Q ss_pred CCcccCchhhhHH-hhhhcccccccchHHHHHHhh--ChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTF-HCVTAMIGAGVLSLPYAMAYL--GWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~-~li~~~iG~GiL~lP~~~~~~--G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 98 (386)
..-|..+.+++++ |+-....|.++ +.|+-+... |.- .+...++.++++........+...+.|+.. .-+...+
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYIS 84 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIR 84 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhH
Confidence 3567778888888 55555555544 556543333 432 455556666666666665555544444322 1123367
Q ss_pred HhhCCCccCeeehhhHH
Q 016628 99 HAFGPKLGPWIVLPQQL 115 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~ 115 (386)
+++||++|.. ..+..+
T Consensus 85 RAFGP~~GFL-vG~a~W 100 (399)
T PHA02764 85 TAFSSKFYTI-FGISLW 100 (399)
T ss_pred HhhCccHHHH-HHHHHH
Confidence 8999876633 333333
No 97
>PRK00701 manganese transport protein MntH; Reviewed
Probab=79.44 E-value=64 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=17.0
Q ss_pred CHHHHHHHhhCCCccCeeehhhHHHHhh
Q 016628 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQV 119 (386)
Q Consensus 92 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~ 119 (386)
+..|+.++-+|+++. +..++...+...
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~ 121 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIM 121 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHH
Confidence 789999999997543 444444333333
No 98
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=78.74 E-value=5.2 Score=37.96 Aligned_cols=77 Identities=18% Similarity=0.399 Sum_probs=59.1
Q ss_pred CHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccc
Q 016628 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 171 (386)
Q Consensus 92 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 171 (386)
=..+..+..||+ .|+++...++.+.|.-+++......+|+.++.++. .+.+.|..++.+.-+.++.. .++.
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------~SY~~~v~if~i~sflvan~-GL~~ 334 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------LSYKTWVIIFTLISFLVANL-GLEQ 334 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHh-hHHH
Confidence 456778899997 79999999999999999999999999988888764 45577888777776665554 4444
Q ss_pred hhhHHH
Q 016628 172 VSSVSL 177 (386)
Q Consensus 172 l~~~s~ 177 (386)
+-..|.
T Consensus 335 Ii~isv 340 (431)
T COG1114 335 IIKISV 340 (431)
T ss_pred HHHHHH
Confidence 444443
No 99
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=77.11 E-value=80 Score=31.23 Aligned_cols=156 Identities=14% Similarity=0.111 Sum_probs=77.2
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-----HHh-----------------------hChhhHHHHHHHHHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-----MAY-----------------------LGWGPGTMVLVISWVTTLN 73 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-----~~~-----------------------~G~~~g~~~~~~~~~~~~~ 73 (386)
+++++-|.++-...+..+-+|+|++.-..+ +.+ =|. .++....+.++...|
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~-~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGF-HAWAIYALVGLAIAY 148 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhe
Confidence 456677888889999999999998876522 211 111 123333333333332
Q ss_pred HHHHHhhccccCCCcccCCHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHH
Q 016628 74 TMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI 153 (386)
Q Consensus 74 s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (386)
..+ + +.+...-+..-|+-++++.-|+ .|+. +|+...+...+....-+-.....+..-++...+- +.+...+.
T Consensus 149 ~~y---~-k~~~~~~ss~l~pl~g~~~~g~-~g~~-ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi--~~~~~~~~ 220 (485)
T PF02028_consen 149 FFY---N-KGKPLRISSALYPLLGDRINGP-LGKI-IDILAIFATIFGVATSLGLGVPQISAGLSSLFGI--PNTFGLQI 220 (485)
T ss_dssp HHH---T-S---SSGGGGCHHHHHHHHHSH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--SSTHHHHH
T ss_pred eee---e-cCCCCchhhhhhhhcCCcccCc-chhh-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC--CCchHHHH
Confidence 222 1 1111111122356666666664 6754 5555555544444444444455555555554422 11222222
Q ss_pred --HHHHHHHHhhhcCCCc-cchhhHHHHHHHHHHHH
Q 016628 154 --LIFGSLHFFLSQLPDI-NSVSSVSLAAAVMSLSY 186 (386)
Q Consensus 154 --~i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~ 186 (386)
++...+++..+....+ |.+++.|-+...+.+..
T Consensus 221 ~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~l 256 (485)
T PF02028_consen 221 IIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFAL 256 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2333445556666666 44777777776655443
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=62.55 E-value=17 Score=35.14 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=50.7
Q ss_pred HHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcC
Q 016628 94 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 166 (386)
Q Consensus 94 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 166 (386)
..+.+..+|+ +|+++..+.+.+.|+-+++.-....+|..++..+ .+.+.|..+.+++.++++..
T Consensus 268 ~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 268 HAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHHHHHHh
Confidence 4447889997 7899999999999999999988888887766542 45577888888887777765
No 101
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=62.46 E-value=1.9e+02 Score=29.68 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=35.0
Q ss_pred chhhhHHhhhhcccccc-cchHHHHHHhhCh----hhHHHHHHHHHHHHHHHHHHHhh
Q 016628 28 KWWYSTFHCVTAMIGAG-VLSLPYAMAYLGW----GPGTMVLVISWVTTLNTMWQMIN 80 (386)
Q Consensus 28 s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~----~~g~~~~~~~~~~~~~s~~~l~~ 80 (386)
+..+-.+..++..+|-| +.-.|+..-+.|- ++=++++.++|+=..+--..+.+
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQ 96 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQ 96 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 66888999999999999 8889997665554 33344444444444444444444
No 102
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=53.91 E-value=67 Score=31.86 Aligned_cols=27 Identities=15% Similarity=-0.043 Sum_probs=21.2
Q ss_pred CcccCchhhhHHhhhhcccccccchHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLP 49 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP 49 (386)
+++.-+.++-.+.++.+-+|.|++..+
T Consensus 84 ~~PEfs~~SW~aMLFaAGmGigl~fwg 110 (537)
T COG1292 84 EKPEFSTLSWLAMLFAAGMGIGLLFWG 110 (537)
T ss_pred CCCCcchhHHHHHHHHcccCceeeEee
Confidence 444556677789999999999998765
No 103
>PLN02680 carbon-monoxide oxygenase
Probab=52.10 E-value=1.7e+02 Score=25.78 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 255 MWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 255 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
.+|.+.+..-...++...+|+.....+.++. ++-+-+.-+.|.-..+-+++.++.+..+....+|.
T Consensus 78 ~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 78 LKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3467777777777777788886644444433 33222334688888888899999998888878885
No 104
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=51.55 E-value=1.5e+02 Score=29.56 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred CHHHHHHHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHH
Q 016628 92 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 138 (386)
Q Consensus 92 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~ 138 (386)
...++-..+.||| |.......+.+..+..+++-+...++..-.+-.
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6778888899986 457777777777787777777666665554443
No 105
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=51.51 E-value=48 Score=32.06 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=78.6
Q ss_pred CCCccccchhhhhhHHHHHHHHHHh-hhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHH--HHHhhhccccchH
Q 016628 247 PEKPSKILMWKGALGAYFVNAICYF-PVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVH--VIGSYQVFAMPVF 323 (386)
Q Consensus 247 m~~p~~~~~~~~~~~~~~~~~~~y~-~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~--~~~s~pl~~~p~~ 323 (386)
+.+-.|++-+++...+..+...... +....++..|+.-.+...-+-+.+.+-...+........ ...++|.+.++++
T Consensus 215 i~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~ 294 (415)
T COG0814 215 LVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALF 294 (415)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4444444544435544444444443 556666666665444333333333333333444443322 2388899999988
Q ss_pred HHHHHHHHh----h------cCCCCCchhhhhHHHHHHHHHHHHHHhccc-chhhhhhcccccccceeEeec
Q 016628 324 HLLEGMMIK----R------MNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFVS 384 (386)
Q Consensus 324 ~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Gs~~~~~~~~i~P 384 (386)
......+.- + .++.+.+..|..........+++.++..|. +....+..|++..+..+-++|
T Consensus 295 Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~ 366 (415)
T COG0814 295 AIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIP 366 (415)
T ss_pred HHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 775553321 1 112234455777888888899999998884 677777777666665555544
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=45.45 E-value=76 Score=32.69 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=21.7
Q ss_pred CcccCchhhhHHhhhhcccccccchHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLP 49 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP 49 (386)
+++.-|.++-+..++.+-+|+|++.--
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwg 115 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFS 115 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeeh
Confidence 456677788899999999999987654
No 107
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=38.24 E-value=3e+02 Score=27.47 Aligned_cols=27 Identities=15% Similarity=-0.063 Sum_probs=21.6
Q ss_pred CcccCchhhhHHhhhhcccccccchHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLP 49 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP 49 (386)
+++.-|.++-+..+..+-+|+|++.--
T Consensus 82 ~kPefs~~sW~aMlf~aG~G~gllfwg 108 (504)
T PRK03356 82 EKPEFSTASWIFMMFASCTSAAVLFWG 108 (504)
T ss_pred CCCCccchHHHHHHHHHhhhhhhhhhh
Confidence 356667788889999999999988653
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=35.22 E-value=1.2e+02 Score=29.58 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=21.4
Q ss_pred CcccCchhhhHHhhhhcccccccchHH
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLP 49 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP 49 (386)
++++-|.++-+..+..+-+|+|++.-.
T Consensus 33 ~kPefS~~sW~aMlf~aG~G~gllfwg 59 (453)
T TIGR00842 33 EKPEFSTLSWLAMLFAAGMGIGLMFWG 59 (453)
T ss_pred CCCCCcchHHHHHHHHHhhhhhhhhhH
Confidence 355667778889999999999988654
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=34.67 E-value=46 Score=20.81 Aligned_cols=28 Identities=25% Similarity=0.057 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcccCCCC
Q 016628 258 GALGAYFVNAICYFPVALIGYWAFGQDV 285 (386)
Q Consensus 258 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (386)
+...++.+..++..+.|..-|.+||.-.
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4455666677777788888888888643
No 110
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=33.89 E-value=41 Score=20.79 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhhhhhhhhcccCCCC
Q 016628 260 LGAYFVNAICYFPVALIGYWAFGQDV 285 (386)
Q Consensus 260 ~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (386)
..+..+..++-.+.|..-|.+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 45566666777788888888998643
No 111
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=33.58 E-value=3.4e+02 Score=23.97 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=51.1
Q ss_pred ccccchhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 250 PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 250 p~~~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
+.+++..|.+....=.+.+...++|+..-..+-++.. +-+-+.=++|....+-+++.++-...|-..++|+
T Consensus 82 ~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 82 YTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444667888888877778888888877766666554 2222233678888888889988888888777776
No 112
>CHL00020 psbN photosystem II protein N
Probab=31.68 E-value=46 Score=20.51 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcccCCCC
Q 016628 258 GALGAYFVNAICYFPVALIGYWAFGQDV 285 (386)
Q Consensus 258 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 285 (386)
+...++.+..++..+.|..-|.+||.-.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 3445666667777778888888888643
No 113
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=30.57 E-value=5.2e+02 Score=25.41 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=23.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHhcc--cchhhhh
Q 016628 339 GAAVRVVARSAYVAFTLFVGVTFP--FFGDLLG 369 (386)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~ 369 (386)
++.+|...|.+-.++++++++... +++.+.+
T Consensus 355 ~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~ 387 (503)
T KOG1291|consen 355 PWLRRLITRSIAIIPTLIVALTSGEDGLSGLND 387 (503)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeCcccHHHHHH
Confidence 567888889999999999988765 3444433
No 114
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=24.87 E-value=1e+02 Score=19.96 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcccCCCCC
Q 016628 258 GALGAYFVNAICYFPVALIGYWAFGQDVD 286 (386)
Q Consensus 258 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~~ 286 (386)
-+..=..+.+++|++.|+.-+..+.++..
T Consensus 24 fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 24 FVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 34445567889999999987777666554
No 115
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.21 E-value=1.8e+02 Score=23.38 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhcc-CCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL-KRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
|.+....-...++-..+|+..-..+-++. ++ .|+ .-+.|.-...-+++.++.+..+....+|.
T Consensus 41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~-~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 41 KILHGLLHIMALVISLVGLVAVFDYHQAN--GY-PDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55677777777777777776654444432 22 233 34678888888889999999988888885
No 116
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.78 E-value=1.8e+02 Score=23.39 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
|.+.+..-...++...+|+..-..+-++.. .-+-+.-+.|.-.++-+++.++.+..+....+|.
T Consensus 41 k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 41 KAVHLTLHLVALVLGIVGIYAAFKFHNEVG--IPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 567777777777777788755544444432 2222233678888888888889888887777886
No 117
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=23.52 E-value=4.1e+02 Score=21.62 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCCC-----hhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDVD-----DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~-----~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
|-+.........+|+..++..|..-....+ +.-..|.- ......++.++...--..+|.+......-.+ +.+.
T Consensus 5 ~~i~~~~l~~~~~fl~~al~sy~~~D~~~~~~~~~~~~~~N~~-G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~-~~~~ 82 (171)
T PF13491_consen 5 REILGIALLLLALFLLLALISYSPSDPSWNSSGSTDAEVHNLM-GILGAYLADFLFQLFGLGAYLLPLLLIVWGI-RLFR 82 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccCCCcCCC-ChHhHHHHHhHHhccchHHHHHHHHHHHHHH-HHHH
Confidence 445555666778889999988843332211 11223332 1344445555444333444443333333332 2222
Q ss_pred hhcCCCCCchhhhhHHHHHHHHHHHHHHhcccc
Q 016628 332 KRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFF 364 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~ 364 (386)
++ +.++...+.......++..+.+.+...|+.
T Consensus 83 ~~-~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~ 114 (171)
T PF13491_consen 83 RR-SLRRRIRRWLGLLLLLLSLSGLLSLLIPSF 114 (171)
T ss_pred cc-CchhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22 111122333333334445566666666653
No 118
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.14 E-value=2.7e+02 Score=24.18 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
|.+....-...++...+|+..-..+-++.++.+-+-+.-+.|.-...-+++.++.+..+...++|.
T Consensus 58 k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 58 KLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 667777777777777777655444444443344333345688888888888899988887777775
No 119
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=20.37 E-value=7.9e+02 Score=23.82 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=38.6
Q ss_pred hhhhHHhhhhcccccccchHHHHHH-hhC--hhhHHHHHHHHHHHHHHHH-HHHhhccccCCCcccCCHHHHHHHhhCCC
Q 016628 29 WWYSTFHCVTAMIGAGVLSLPYAMA-YLG--WGPGTMVLVISWVTTLNTM-WQMINLHECVPGVRFDRYIDLGRHAFGPK 104 (386)
Q Consensus 29 ~~~~~~~li~~~iG~GiL~lP~~~~-~~G--~~~g~~~~~~~~~~~~~s~-~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 104 (386)
.+..-+.+..-..|+|=+-.|-... ++| ++.+.+-+++.|..-=.-. ..+.+ ..+ +|+++.++. ||+
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~----~g~----~~~~l~~~i-~~~ 77 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVAL----YGG----GVESLATRI-GPW 77 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhc----cCC----CHHHHhhhc-cch
Confidence 4455667778889999888886543 333 4456666555553322111 11111 222 678877666 555
Q ss_pred cc
Q 016628 105 LG 106 (386)
Q Consensus 105 ~g 106 (386)
.|
T Consensus 78 fg 79 (431)
T COG1114 78 FG 79 (431)
T ss_pred HH
Confidence 54
No 120
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=20.20 E-value=7.7e+02 Score=23.60 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=16.6
Q ss_pred CHHHHHHHhhCCCccCeeehhhHHH
Q 016628 92 RYIDLGRHAFGPKLGPWIVLPQQLI 116 (386)
Q Consensus 92 ~y~~l~~~~~G~~~g~~~~~~~~~~ 116 (386)
+..|+.++-++| +.++..++...+
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l 88 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAEL 88 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHH
Confidence 789999999997 455655544333
No 121
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=20.17 E-value=9.4e+02 Score=24.57 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred chhhhHHhhhhcccccc-cchHHHH-HHhhCh---hhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 28 KWWYSTFHCVTAMIGAG-VLSLPYA-MAYLGW---GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 28 s~~~~~~~li~~~iG~G-iL~lP~~-~~~~G~---~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
+..+.....++..++.| +--.||. +++.|+ ++=.+++++.|+=-.|-=..+.+-+++ +. ..-+..++=..-|
T Consensus 83 ~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-g~--~gvw~ri~P~l~G 159 (629)
T KOG3659|consen 83 SKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-GC--IGVWRRIAPALKG 159 (629)
T ss_pred hHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-cc--hhHHHHhCHHhcC
Confidence 44667778888888888 8889985 666665 355666666666666655566654331 11 2244455444444
Q ss_pred CCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHH
Q 016628 103 PKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 140 (386)
Q Consensus 103 ~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~ 140 (386)
.|.-++.++.+...+ |-++.+-.+..++..+
T Consensus 160 --igy~i~~i~~~~~~y-----yn~i~aWA~~yl~~sf 190 (629)
T KOG3659|consen 160 --IGYAICLIAFFVGLY-----YNVIIAWALYYLFTSF 190 (629)
T ss_pred --CchhhhHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 576666666655554 3344444444444443
No 122
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=20.12 E-value=8.7e+02 Score=24.18 Aligned_cols=111 Identities=19% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhC--hhhHHHHHHHHHHHHHHHHHHHhhccccCCCcc-cCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLG--WGPGTMVLVISWVTTLNTMWQMINLHECVPGVR-FDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G--~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~-~~~y~~l~~ 98 (386)
+++|.=++++-+..=....++++..-.....-+.| |..+++...+.-.+. ...+.- ...+|.. ..+++-..+
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~---~~f~~l--ns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFT---AIFLVL--NSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHH---HHHHHH--ccCCCcccccceeeeee
Confidence 34666778887777777777777777777777777 444554443322221 111111 1234432 346666677
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeee---echhchHHHHHHHc
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMV---TGGKCLKKFVEMAC 141 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v---~~~~~l~~~~~~~~ 141 (386)
..||- +|. .+-++.-....|+=|-+ ..++.+.-+++...
T Consensus 126 ~sFGi-ygS---~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~ 167 (572)
T KOG2466|consen 126 SSFGI-YGS---LWPIINRVVMACVWYGVNAWIGGECVQLMLKSIF 167 (572)
T ss_pred eehhh-hHh---HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHh
Confidence 77775 232 22222223333333322 44555555555544
Done!