Query 016628
Match_columns 386
No_of_seqs 142 out of 1389
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 5.6E-16 1.9E-20 149.5 13.5 294 22-331 5-306 (445)
2 3gia_A Uncharacterized protein 99.5 1E-13 3.6E-18 133.5 15.0 290 22-332 3-305 (444)
3 4djk_A Probable glutamate/gamm 99.3 1.4E-10 4.8E-15 113.6 19.6 295 22-331 8-321 (511)
4 2jln_A MHP1; hydantoin, transp 98.5 2.5E-06 8.5E-11 82.9 16.6 331 23-377 23-372 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.00013 4.4E-09 71.3 6.7 150 23-185 18-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.2 0.0027 9.2E-08 62.9 11.8 149 24-185 48-198 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.6 0.41 1.4E-05 46.1 21.8 225 26-260 8-280 (519)
8 2wsw_A BCCT family betaine/car 38.3 1.4E+02 0.0049 28.3 9.1 159 23-185 87-273 (509)
9 4ain_A Glycine betaine transpo 33.7 32 0.0011 33.0 3.8 28 22-49 91-118 (539)
10 4b4a_A TATC, SEC-independent p 31.0 1.5E+02 0.0053 25.1 7.4 59 296-363 147-205 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.66 E-value=5.6e-16 Score=149.49 Aligned_cols=294 Identities=16% Similarity=0.109 Sum_probs=177.2
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
+++|+.+.++.++..+++++|+|++.+|...++.|. .+++..++.++........+.|...+.|+.. .+.+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 467899999999999999999999999998888887 4888889999998888888888766666532 6788889999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHH-HHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL-IFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
||++| ++..+..++........+....++++..+++.. . .....+.+ +...+++-....+..|...+++.+..
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL----K-DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG----G-SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc----c-ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 98776 445555555444444444444444443332221 0 00011111 11122222233446666666666555
Q ss_pred HHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhh
Q 016628 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (386)
...+...++.....+...+.+....+. ......++.++..++....|+|.|.+......+| +|||+| +++|+..
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~ 229 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAW-NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhccccc-CccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHH
Confidence 544433332222222222111111111 0111224667889999999999999999999999 899976 7889999
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCC----h---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628 261 GAYFVNAICYFPVALIGYWAFGQDVD----D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 331 (386)
Q Consensus 261 ~~~~~~~~~y~~~g~~gy~~fg~~~~----~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~ 331 (386)
.+..++.++|.+..+......+.+.. . .+.+.... ++...+..+...+..+.+.-...+..-+.+..+-+
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHC-TTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887766655543321 1 11222111 23444455556666666655555555565555543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.52 E-value=1e-13 Score=133.50 Aligned_cols=290 Identities=11% Similarity=0.050 Sum_probs=178.7
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHh
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYA-MAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHA 100 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~-~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 100 (386)
+++|+.+.++..+..+++++|+|++.+|.. .+..|. .+++.+++.+++.......+.|...+.|+.. ...+..++.
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~ 79 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKA 79 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHH
Confidence 357899999999999999999999988754 556666 6888889999999888888888766666532 677889999
Q ss_pred hCCCc-cCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHH-HH--HHHHHHhhhcCCCccchhhHH
Q 016628 101 FGPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI-LI--FGSLHFFLSQLPDINSVSSVS 176 (386)
Q Consensus 101 ~G~~~-g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~i--~~~~~~pl~~~~~l~~l~~~s 176 (386)
+|+++ +.++ .+..++........+....++++..+++. . ...++. ++ ...+++-....+..|...+++
T Consensus 80 ~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 80 IGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINA----P---INTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp HCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C---CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99852 2232 23344444444455555555655544322 1 112221 11 222222233344666666666
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchh
Q 016628 177 LAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW 256 (386)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~ 256 (386)
.+.....+...++.+...+...+.++.+ +...+.++.+++.++...+|+|.|++......+| +|||+| +++
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e----~k~P~r-~ip 222 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVI----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEH----IENPKK-NVP 222 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTS----CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG----BSSHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcC----CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH----ccCccc-chh
Confidence 6555543332222222222221111111 1123456678889999999999999999999999 899976 788
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCCCC----Ch-hh---hhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHH
Q 016628 257 KGALGAYFVNAICYFPVALIGYWAFGQDV----DD-NV---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 328 (386)
Q Consensus 257 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~----~~-~i---l~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~ 328 (386)
|+...+..++.++|....+......+.+. ++ .. ....- +++...+..+...+..+.+..-.++..-+.+..
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a 301 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFL-GNLGFLLISIGALFSISSAMNATIYGGANVAYS 301 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776554444221 01 11 11111 123334455555666666665556666666665
Q ss_pred HHHh
Q 016628 329 MMIK 332 (386)
Q Consensus 329 ~~~~ 332 (386)
+-+.
T Consensus 302 ~a~d 305 (444)
T 3gia_A 302 LAKD 305 (444)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 5543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.29 E-value=1.4e-10 Score=113.59 Aligned_cols=295 Identities=8% Similarity=-0.022 Sum_probs=154.9
Q ss_pred CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHhhccc--cCCCcccCCHHHHHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTL-NTMWQMINLHE--CVPGVRFDRYIDLGR 98 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~-~s~~~l~~~~~--~~~~~~~~~y~~l~~ 98 (386)
+.+|+.+.++.++..++.++| +..+|. .+..|.. +++..++.+++.. .....+.|... +.| .. ..+...+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 567899999999999999986 677776 4666653 4444444444332 25666677655 556 33 6788889
Q ss_pred HhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHH-HHHHHHHHhhhcCCCccchhhHHH
Q 016628 99 HAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI-LIFGSLHFFLSQLPDINSVSSVSL 177 (386)
Q Consensus 99 ~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~ 177 (386)
+.+||++| ++..+..++.......++....++.+..++. .+.........+. .+...+++-....+..|...+++.
T Consensus 81 ~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 157 (511)
T 4djk_A 81 NTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILK--WPALNEDPITKTIAALIILWALALTQFGGTKYTARIAK 157 (511)
T ss_dssp HHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT--CGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTH
T ss_pred hhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999876 4455555555544444444444444432210 1111100101111 112222222333446666666655
Q ss_pred HHHHHH----HHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCcccc
Q 016628 178 AAAVMS----LSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKI 253 (386)
Q Consensus 178 ~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~ 253 (386)
+..... +..+++........+...+.+.+.....+.....+...++...+|+|.|.+......+| +|||+|
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E----~k~P~k- 232 (511)
T 4djk_A 158 VGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE----MSNPGR- 232 (511)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS----SSCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh----ccCccc-
Confidence 543321 11111111111112211111111111111111123345678889999999999999998 899987
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhhhcccCCCCCh---h-------hhhccC-CChHHHHHHHHHHHHHHHHhhhccccch
Q 016628 254 LMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD---N-------VLMALK-RPGWLIAAANLMVVVHVIGSYQVFAMPV 322 (386)
Q Consensus 254 ~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~---~-------il~~~~-~~~~~~~~~~i~~~i~~~~s~pl~~~p~ 322 (386)
++||++..+..++.++|++..+......+++... . ...+.. ...+...+..+...++.+.+....++..
T Consensus 233 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
T 4djk_A 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGP 312 (511)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998887766666543221 1 112221 0235555566666666666655555555
Q ss_pred HHHHHHHHH
Q 016628 323 FHLLEGMMI 331 (386)
Q Consensus 323 ~~~~~~~~~ 331 (386)
-+.+..+-+
T Consensus 313 sR~l~a~ar 321 (511)
T 4djk_A 313 SRGMYVTAQ 321 (511)
T ss_dssp HHHTCHHHH
T ss_pred HHHHHHHcc
Confidence 555555443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.52 E-value=2.5e-06 Score=82.91 Aligned_cols=331 Identities=9% Similarity=-0.016 Sum_probs=164.5
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHHHHh-hChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAY-LGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~-~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
++|+.++++.+..-++..++.+.+.+...+.. .++..+++..++..++....+.+......+. ..+|..+.+..|
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~----Gl~~~v~~R~~F 98 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW----GINFTVAARMPF 98 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----CCCHHHHTTTTS
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----CCChhhhhHhhc
Confidence 34567888888777888877777766655443 3345566666665555554444444432221 237899999999
Q ss_pred CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccc-hhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR-QTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
|+ .|..+..+...+..+|-...-....++.+..+++...+ .. ...+.+++.++.++.. ...++.++++..+..
T Consensus 99 G~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~ 172 (501)
T 2jln_A 99 GI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFAS 172 (501)
T ss_dssp CT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHH
Confidence 98 46677777777777777666666667777777654321 11 2334455555556655 457778877777776
Q ss_pred HHHHHHHHHHhhhhccccccC-CccccccCCCchhhhhHHHHHHHHH-HHHhcCCcchhhchhcCCCCCCCccc---cc-
Q 016628 181 VMSLSYSTIAWAGSLSHGRIE-NVSYAYKHTSSADYMFRVFNALGQI-SFAFAGHAVALEIQATIPSTPEKPSK---IL- 254 (386)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~fsf~~~~~~~~i~~~~~~~m~~p~~---~~- 254 (386)
...++..+...+..+.+.... +..... ........+..++... .+.-....+.+...+. +|++++ ++
T Consensus 173 p~~~i~~i~~~~~~l~~~g~~~~~~~~~---~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy----~~~~~~~~~~~~ 245 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADVSLGEVMSM---GGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKE----CKVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHTTC---CCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTT----BCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhcc---CCccchHHHHHHHHHHHHHHHHHHhccCccccc----CCCCccccccch
Confidence 544433333322222221110 000000 0011122333333332 1111222556777777 444443 11
Q ss_pred ------hhhhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhc-cCCChHHHHHHH-HHHHHHHHHhhh-ccccchHHH
Q 016628 255 ------MWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMA-LKRPGWLIAAAN-LMVVVHVIGSYQ-VFAMPVFHL 325 (386)
Q Consensus 255 ------~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~-~~~~~~~~~~~~-i~~~i~~~~s~p-l~~~p~~~~ 325 (386)
.......+..+...+..++|+..-...+......++.. ++.........- +.+.++.+.+-- -+.++.-..
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11222344444454555555543323333333344444 332222123333 444444443333 256666666
Q ss_pred HHHHHHhhcCCCCCchhhhhHHHHHHHHHHHHHHhc--ccchhhhhhccccccc
Q 016628 326 LEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFT 377 (386)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~v--p~~~~i~~l~Gs~~~~ 377 (386)
+.+..++. .+|.....+..++.++++... ..+...+++.|.+.+.
T Consensus 326 l~~~~~~~-------i~~~~~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P 372 (501)
T 2jln_A 326 LCSTFPRV-------FTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGP 372 (501)
T ss_dssp HHHHSTTT-------CCHHHHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHH
T ss_pred HHHhCccc-------cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66654321 122222223333444444432 2456667777766544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.49 E-value=0.00013 Score=71.35 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=78.8
Q ss_pred CcccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF 101 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 101 (386)
-.|+.+++...+.+..+.+++. ++++|-...+.|+........ .++.-......+....++ .+..|.+|..++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~---~~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KGIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH---TTCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH---cCCccHHHHHHHHc
Confidence 4688899999999998888875 888998877788753221111 111111112222222222 23569999999999
Q ss_pred CCCccCeeehhhHHH-HhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHH
Q 016628 102 GPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180 (386)
Q Consensus 102 G~~~g~~~~~~~~~~-~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 180 (386)
|++. +.+..+...+ ..+..+.+-+...+. .++... ..+.....++..++...-+..-.++...++..+..
T Consensus 94 g~~~-~~~~a~~~l~~~~~~~~~~~l~~~~~----~~~~~~----Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 94 NKKL-KTILAVFWISLYIFVNLTSVLYLGGL----ALETIL----GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp CHHH-HHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHT----TCCHHHHHHHHHHHHHHTTC------CCSHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh----CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9753 4433333221 111111111111122 223222 23334444555555566667779999999999888
Q ss_pred HHHHH
Q 016628 181 VMSLS 185 (386)
Q Consensus 181 ~~~~~ 185 (386)
..++.
T Consensus 165 ~im~~ 169 (530)
T 3dh4_A 165 FFLVL 169 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.16 E-value=0.0027 Score=62.88 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=76.4
Q ss_pred cccCchhhhHHhhhhcccccc-cchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhhC
Q 016628 24 TRRAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFG 102 (386)
Q Consensus 24 ~~~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 102 (386)
.|+.+++...+.+..+.+++. .++.|-...+.|+........ .++........+..-.++ .+..|.+|..++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CCCCCcHHHHHHHcc
Confidence 578899999999988888775 778998777788643221111 111111112222222222 235699999999999
Q ss_pred CCccCeeehhhHHH-HhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCccchhhHHHHHHH
Q 016628 103 PKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAV 181 (386)
Q Consensus 103 ~~~g~~~~~~~~~~-~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 181 (386)
++. +.+..+...+ ..+.....-+...+..++.++ ..+.....++..+++...+..-.++...++-.+..+
T Consensus 124 ~~~-~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 124 KKL-KTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 753 3333322221 111111111111222222222 233344445556666677778889999888888877
Q ss_pred HHHH
Q 016628 182 MSLS 185 (386)
Q Consensus 182 ~~~~ 185 (386)
..+.
T Consensus 195 iml~ 198 (593)
T 2xq2_A 195 FLVL 198 (593)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.64 E-value=0.41 Score=46.08 Aligned_cols=225 Identities=12% Similarity=0.051 Sum_probs=105.0
Q ss_pred cCchhhhHHhhhhcccccc-cchHHHHHHhhCh----hhHHHHHHHHHHHHHHHHHHHhhccc-cCCCcccCCHHHHHHH
Q 016628 26 RAKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGW----GPGTMVLVISWVTTLNTMWQMINLHE-CVPGVRFDRYIDLGRH 99 (386)
Q Consensus 26 ~~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~----~~g~~~~~~~~~~~~~s~~~l~~~~~-~~~~~~~~~y~~l~~~ 99 (386)
=.|..+-++..+++.+|-| +.-.||...+-|- ++=++++++.|+-..+.=..+.|-.. +.++.....|.++.
T Consensus 8 W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~-- 85 (519)
T 2a65_A 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLW-- 85 (519)
T ss_dssp CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhc--
Confidence 3456777889999999999 9999998777773 23334444444444333344444111 11111112333332
Q ss_pred hhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCC-------------------------------cccc
Q 016628 100 AFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC-------------------------------KPLR 148 (386)
Q Consensus 100 ~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~-------------------------------~~~~ 148 (386)
.++..+. +.....+..+..++-|.++.+-.+..+.....++. +...
T Consensus 86 --~~~~~~g-iG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g 162 (519)
T 2a65_A 86 --RNRFAKI-LGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPIL 162 (519)
T ss_dssp --CSHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBC
T ss_pred --CCcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCccccc
Confidence 1100111 11122222233333344443333333333322110 0000
Q ss_pred -hhHHHHH---HHHHHHhhhcCCCc-cchhhHHHHHHHHHHHHHHHHhhhhccc-c----ccCCcccc-ccCCCchhhhh
Q 016628 149 -QTFWILI---FGSLHFFLSQLPDI-NSVSSVSLAAAVMSLSYSTIAWAGSLSH-G----RIENVSYA-YKHTSSADYMF 217 (386)
Q Consensus 149 -~~~~~~i---~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~----~~~~~~~~-~~~~~~~~~~~ 217 (386)
.++..++ ...++.-++..|.. |....++.+-....++..++..++.... | ..++.++- .+++..-.+..
T Consensus 163 ~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~ 242 (519)
T 2a65_A 163 KPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPG 242 (519)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHH
Confidence 0122222 22223345667777 6677777776665554444444444332 2 12222111 11222222345
Q ss_pred HHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhh
Q 016628 218 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL 260 (386)
Q Consensus 218 ~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~ 260 (386)
-...|.+..+|+...-.-..-.+.+ .+|+|.++.|...
T Consensus 243 vw~~A~gQ~FFSLslG~G~~ity~S-----Y~~~~~n~~~~a~ 280 (519)
T 2a65_A 243 VWIAAVGQIFFTLSLGFGAIITYAS-----YVRKDQDIVLSGL 280 (519)
T ss_dssp HHHHHHHHHHHHHTTTSSHHHHHHT-----TSCTTSCCHHHHH
T ss_pred HHHHHHHHHHHHhHHHHhHHhhhhc-----ccCCCcChHhhHH
Confidence 6789999999999877554555554 3344445445443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=38.27 E-value=1.4e+02 Score=28.31 Aligned_cols=159 Identities=9% Similarity=-0.063 Sum_probs=76.7
Q ss_pred CcccCchhhhHHhhhhcccccccchHHHH-----HHh------hChh----hHHHHHHHHHHHHHHHHHHHh-----h-c
Q 016628 23 PTRRAKWWYSTFHCVTAMIGAGVLSLPYA-----MAY------LGWG----PGTMVLVISWVTTLNTMWQMI-----N-L 81 (386)
Q Consensus 23 ~~~~~s~~~~~~~li~~~iG~GiL~lP~~-----~~~------~G~~----~g~~~~~~~~~~~~~s~~~l~-----~-~ 81 (386)
++++-|.++-+..+..+-+|.|++.-..+ +.+ .|-. .+.....+=+-+.-++.+.+. . +
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 56667888889999999999998875322 221 1100 111111111111111111111 1 1
Q ss_pred cccC--CC-cccCCHHHHH-HHhhCCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHH--H
Q 016628 82 HECV--PG-VRFDRYIDLG-RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL--I 155 (386)
Q Consensus 82 ~~~~--~~-~~~~~y~~l~-~~~~G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~--i 155 (386)
++|+ |. -|..=|+-++ ++.-|+ .|+.+=.+.++-..+|...+ +-.....+..-++...+-. .+.....+ +
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~-~G~~IDilav~at~~G~ats-LGlg~~qi~~Gl~~lfGi~--~~~~~qi~ii~ 242 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTS-LGLATPLVTECIQYLFGIP--HTLQLDAIIIS 242 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--CCHHHHHHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCC--CccHHHHHHHH
Confidence 1111 11 1233467777 788885 78764444455555555544 3333334444444433211 12222222 2
Q ss_pred HHHHHHhhhcCCCc-cchhhHHHHHHHHHHH
Q 016628 156 FGSLHFFLSQLPDI-NSVSSVSLAAAVMSLS 185 (386)
Q Consensus 156 ~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~ 185 (386)
...+++..+....+ |.+++.|.+.....+.
T Consensus 243 vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 243 CWILLNAICVAFGLQKGVKIASDVRTYLSFL 273 (509)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33334556677777 6777777766664443
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=33.75 E-value=32 Score=33.00 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=22.9
Q ss_pred CCcccCchhhhHHhhhhcccccccchHH
Q 016628 22 EPTRRAKWWYSTFHCVTAMIGAGVLSLP 49 (386)
Q Consensus 22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP 49 (386)
++++.-|.++-+..+..+-+|.|++.-.
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl~Fwg 118 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGLMFYG 118 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHhhcchheeeh
Confidence 4566778889999999999999988543
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=31.05 E-value=1.5e+02 Score=25.07 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHhhcCCCCCchhhhhHHHHHHHHHHHHHHhccc
Q 016628 296 PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF 363 (386)
Q Consensus 296 ~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~ 363 (386)
+++...+.++.....+.+-.|+... +.... +--+....+..-|.+++....+-|+..||
T Consensus 147 ~~Yl~fv~~l~l~fGl~FelPvi~~-----~L~~~----Giv~~~~l~~~Rr~~iv~~~v~aAiiTPD 205 (249)
T 4b4a_A 147 DMYISFVLKLVVAFGIAFEMPIVLY-----VLQKA----GVITPEQLASFRKYFIVIAFVIGAIIAPD 205 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHH-----HHHHT----TSSCHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHc----CCcCHHHHHHHhHHHHHHHHHHHHHHCCc
Confidence 4556666677777777777775432 22222 11122233333455555555555666783
Done!