AmiGO: BLAST Results


BLAST match view associations BLAST with AT5G19960 AT5G19960 AT5G19960	protein from Arabidopsis thaliana	6.3e-53
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	3.0e-18
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	1.3e-16
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	3.7e-16
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.8e-15
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	3.9e-15
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	3.9e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	8.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.4e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.4e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.4e-14
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.9e-14
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	1.1e-13
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.7e-13
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.9e-13
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein, isoform CRA_c	protein from Homo sapiens	2.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.5e-13
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.7e-13
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	8.9e-13
BLAST match view associations BLAST with rbmx2 rbmx2 rbmx2 RNA binding motif protein, X-linked 2	gene_product from Danio rerio	1.0e-12
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	1.2e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.3e-12
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	1.3e-12
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	1.3e-12
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.5e-12
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.5e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	1.9e-12
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	2.7e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-12
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	3.4e-12
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	3.4e-12
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	4.1e-12
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	4.1e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	5.3e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.9e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	8.9e-12
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.6e-11
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	2.6e-11
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-11
BLAST match view associations BLAST with F1P133 F1P133 F1P133 Uncharacterized protein	protein from Gallus gallus	3.2e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.1e-11
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA binding protein	protein from Coxiella burnetii RSA 493	5.3e-11
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA-binding protein	protein from Coxiella burnetii RSA 493	5.3e-11
BLAST match view associations BLAST with DDB_G0294559 DDB_G0294559 DDB_G0294559 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	6.4e-11
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	7.5e-11
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	7.6e-11
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with cpf-2 cpf-2 cpf-2	gene from Caenorhabditis elegans	1.2e-10
BLAST match view associations BLAST with SFRS2 SFRS2 SFRS2 cDNA FLJ52570, highly similar to Splicing factor, arginine/serine-rich 2	protein from Homo sapiens	1.5e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	1.5e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	1.5e-10
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	1.9e-10
BLAST match view associations BLAST with rsp-6 rsp-6 rsp-6	gene from Caenorhabditis elegans	1.9e-10
BLAST match view associations BLAST with rsp-6 rsp-6 rsp-6 Probable splicing factor, arginine/serine-rich 6	protein from Caenorhabditis elegans	1.9e-10
BLAST match view associations BLAST with LOC534630 LOC534630 LOC534630 Uncharacterized protein	protein from Bos taurus	2.1e-10
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.2e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.4e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.4e-10
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	3.1e-10
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	3.1e-10
BLAST match view associations BLAST with DDB_G0291966 DDB_G0291966 DDB_G0291966 CCHC-type zinc finger-containing protein	gene from Dictyostelium discoideum	3.5e-10
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	4.4e-10
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	5.2e-10
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-10
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	5.2e-10
BLAST match view associations BLAST with AtRZ-1b AtRZ-1b AtRZ-1b AT1G60650	protein from Arabidopsis thaliana	5.4e-10
BLAST match view associations BLAST with RBMY1B RBMY1B RBMY1B RNA-binding motif protein, Y chromosome, family 1 member B	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1E RBMY1E RBMY1E RNA-binding motif protein, Y chromosome, family 1 member E	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1D RBMY1D RBMY1D RNA-binding motif protein, Y chromosome, family 1 member D	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1A1 RBMY1A1 RBMY1A1 RNA-binding motif protein, Y chromosome, family 1 member A1	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1C RBMY1C RBMY1C RNA-binding motif protein, Y chromosome, family 1 member C	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	6.6e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	6.7e-10
BLAST match view associations BLAST with AT5G53680 AT5G53680 AT5G53680	protein from Arabidopsis thaliana	6.7e-10
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	7.0e-10
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	8.6e-10
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	1.0e-09
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016629
        (386 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi...   548  6.3e-53   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   222  3.0e-18   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   208  1.3e-16   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   204  3.7e-16   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   198  1.8e-15   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   195  3.9e-15   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   195  3.9e-15   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   193  6.6e-15   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   193  6.6e-15   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   193  6.6e-15   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   193  6.6e-15   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  6.6e-15   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   192  8.6e-15   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   191  1.1e-14   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   191  1.1e-14   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   191  1.1e-14   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   190  1.4e-14   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   190  1.4e-14   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   190  1.4e-14   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   189  1.9e-14   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   182  1.1e-13   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   176  1.7e-13   2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   176  1.9e-13   2
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   193  2.3e-13   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   179  2.5e-13   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   176  2.7e-13   2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   176  5.3e-13   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   174  8.9e-13   1
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif...   144  1.0e-12   2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   173  1.2e-12   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   176  1.3e-12   2
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"...   153  1.3e-12   2
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein...   176  1.3e-12   2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   176  1.3e-12   2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   176  1.3e-12   2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   176  1.3e-12   2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   176  1.3e-12   2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   176  1.3e-12   2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   172  1.5e-12   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   172  1.5e-12   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   171  1.9e-12   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   175  2.7e-12   2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   169  3.2e-12   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   176  3.4e-12   2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   176  3.4e-12   2
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ...   180  3.4e-12   2
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ...   171  4.1e-12   2
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X...   171  4.1e-12   2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   167  5.3e-12   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   166  6.9e-12   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   165  8.9e-12   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   179  1.6e-11   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   162  2.6e-11   2
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"...   153  2.9e-11   2
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein...   160  3.2e-11   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   159  4.1e-11   1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ...   158  5.3e-11   1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"...   158  5.3e-11   1
DICTYBASE|DDB_G0294559 - symbol:DDB_G0294559 "RNA-binding...   133  6.4e-11   2
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei...   154  7.5e-11   2
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-...   154  7.6e-11   2
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"...   151  1.0e-10   2
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd...   173  1.2e-10   1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl...   154  1.5e-10   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   154  1.5e-10   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   154  1.5e-10   1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein...   165  1.9e-10   2
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd...   153  1.9e-10   1
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor...   153  1.9e-10   1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot...   147  2.1e-10   2
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein...   150  2.2e-10   2
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   152  2.4e-10   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   152  2.4e-10   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   152  2.4e-10   1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl...   151  3.1e-10   1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl...   151  3.1e-10   1
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z...   168  3.5e-10   1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot...   163  4.4e-10   2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   149  5.2e-10   1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p...   149  5.2e-10   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   149  5.2e-10   1
TAIR|locus:2036520 - symbol:AtRZ-1b "AtRZ-1b" species:370...   148  5.4e-10   2
UNIPROTKB|A6NDE4 - symbol:RBMY1B "RNA-binding motif prote...   164  6.4e-10   2
UNIPROTKB|A6NEQ0 - symbol:RBMY1E "RNA-binding motif prote...   164  6.4e-10   2
UNIPROTKB|P0C7P1 - symbol:RBMY1D "RNA-binding motif prote...   164  6.4e-10   2
UNIPROTKB|P0DJD3 - symbol:RBMY1A1 "RNA-binding motif prot...   164  6.4e-10   2
UNIPROTKB|P0DJD4 - symbol:RBMY1C "RNA-binding motif prote...   164  6.4e-10   2
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein...   169  6.6e-10   1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein...   148  6.7e-10   1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi...   148  6.7e-10   1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"...   139  7.0e-10   2
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   147  8.6e-10   1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein...   169  1.0e-09   1

WARNING:  Descriptions of 895 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2147625 [details] [associations]
            symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
            RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
            SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
            EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
            TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
            ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
            Uniprot:Q8RWF8
        Length = 337

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 135/332 (40%), Positives = 188/332 (56%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
             MT+DD +SVYVGGLPY   E++VR+VF  YGSV+ VKIVNDRS RGKCYGFVTF N RSA
Sbjct:     1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXX 153
              DAI DM+G++I GR VRV++V TRG + N G  +                         
Sbjct:    61 DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHGGWDRSPDRRSDGNYERDRYS 120

Query:   154 XXXXXERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPEL 213
                  ER  SQDR K   R  E  R ++     +R +D D    ++ N     R+ D + 
Sbjct:   121 DRSR-ERDRSQDRRKDH-RYIEKERAYEHSHDFERRNDHDM---VDRNGYKE-RVFDGDE 174

Query:   214 ANWER-KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXX 272
              +W   +S +D    R I+GT  +     EG+   +++ D + +D  + R+         
Sbjct:   175 GDWRGDRSYVD--NGRGINGTSAH-----EGRSQETKREDSTILDGGRGRDHFSNSSGDH 227

Query:   273 XXQVKE-LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHR 331
               QVKE L+  I+ RE L+ E+  MEER+ VKE +  +LQK+SK+LE+ LIN KKL S R
Sbjct:   228 --QVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKKLVSQR 285

Query:   332 QKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
             +K+L KL+K + +V E  + LK CE+E Q+ +
Sbjct:   286 RKELAKLHKSYSRVRECTDNLKDCEQELQLLV 317


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 222 (83.2 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 43/109 (39%), Positives = 65/109 (59%)

Query:    19 IKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST- 77
             ++   +FN   E + M+  DE  +++GGL Y   E S+ + F KYG++  V ++ DR T 
Sbjct:     4 VQPSCVFNRNSEVIIMS--DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETD 61

Query:    78 RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             R + +GFVTF NP  A DA+  MNG+ +DGR++RV E    G +S   R
Sbjct:    62 RSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAGKSGGRSGGFR 110


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 42/90 (46%), Positives = 58/90 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +   E+S+ +VF KYG V  V +V DR S R + +GFVTF NP  A DA
Sbjct:     4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             +  MNG+++DGR +RV +    G+ SN  R
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSNDRR 90


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 204 (76.9 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
             + DE  +++GGL +  NE+S+ +VF KYG +  V +V DR T R + +GFVTF NP  A 
Sbjct:     1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             DA+  MNG+ +DGR +RV +    G+ S   R
Sbjct:    61 DAMMAMNGKAVDGRQIRVDQA---GKSSGDRR 89


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 198 (74.8 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 38/92 (41%), Positives = 55/92 (59%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
             + DE  +++GGL +   E S+   F KYG +  V +  +R T R + +GFVTF NP  A 
Sbjct:     1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             DA+  MNG+++DGR +RV E A +G     GR
Sbjct:    61 DALEGMNGKSVDGRTIRVDE-AGKGGGGGGGR 91


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 40/90 (44%), Positives = 55/90 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  +E  +  VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             +  MNG+T+DGR +RV +    G+ SN  R
Sbjct:    64 MAGMNGKTVDGRQIRVDQA---GKSSNDRR 90


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 36/88 (40%), Positives = 59/88 (67%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAI 97
             E   +VGGL ++ N++ +++ F ++G V+  KI+NDR S R + +GFVTF + ++  DAI
Sbjct:     5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNSG 125
              +MNG+ +DGRV+ V+E  +RG     G
Sbjct:    65 EEMNGKELDGRVITVNEAQSRGSGGGGG 92


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 40/89 (44%), Positives = 55/89 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVA--TRGRKSN 123
             +  MNG+++DGR +RV +     RG   N
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGGGDRGYGGN 92


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 192 (72.6 bits), Expect = 8.6e-15, P = 8.6e-15
 Identities = 37/78 (47%), Positives = 52/78 (66%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSE 114
             +  MNG+++DGR +RV +
Sbjct:    64 MMAMNGKSVDGRQIRVDQ 81


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/89 (42%), Positives = 53/89 (59%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  + VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG+++DGR +RV +        + G
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/89 (42%), Positives = 53/89 (59%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  + VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG+++DGR +RV +        + G
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/89 (42%), Positives = 53/89 (59%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  + VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG+++DGR +RV +        + G
Sbjct:    64 MMAMNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/88 (43%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/88 (43%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/88 (43%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 189 (71.6 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
             + DE  +++GGL +  NED + + F KYG +  V +V DR T R + +GFVTF N   A 
Sbjct:     1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             DA+  MNG+++DGR +RV +      +   G
Sbjct:    61 DAMMAMNGKSVDGRQIRVDQAGKSSGERRGG 91


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 182 (69.1 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D E   +VGGL ++ ++ ++   F +YG V+  KI+NDR T R + +GFVTF + ++  D
Sbjct:     5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             AI  MNG+ +DGR + V+E  +RG     G
Sbjct:    65 AIEGMNGQDLDGRSITVNEAQSRGSGGGGG 94


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 176 (67.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    67 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 95

 Score = 55 (24.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   246 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 276

 Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   212 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 255


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 176 (67.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 193 (73.0 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNS 124
             +  MNG+++DGR +RV +    G+ S++
Sbjct:    64 MMAMNGKSVDGRQIRVDQA---GKSSDN 88


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 34/89 (38%), Positives = 52/89 (58%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A DA
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R S  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGSRGG 92


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 176 (67.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   243 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 273

 Score = 40 (19.1 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   209 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 252


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 176 (67.0 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 33/89 (37%), Positives = 52/89 (58%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A DA
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R +  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 174 (66.3 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 34/83 (40%), Positives = 53/83 (63%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATR 118
             A  DMNG+++DG+ ++V E AT+
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATK 86


>ZFIN|ZDB-GENE-050626-88 [details] [associations]
            symbol:rbmx2 "RNA binding motif protein, X-linked 2"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
            IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
            Uniprot:F1RAH8
        Length = 450

 Score = 144 (55.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 27/76 (35%), Positives = 45/76 (59%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             V++GG PY   E  +  VF +YG +  + +V D+ T + K + F+ + + RS + A+++ 
Sbjct:    38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query:   101 NGRTIDGRVVRVSEVA 116
             NG  I GR +RV  VA
Sbjct:    98 NGIKIKGRTIRVDHVA 113

 Score = 95 (38.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 27/96 (28%), Positives = 44/96 (45%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHT-RIHDPEL-ANW 216
             +R   Q+RD G  R+ E  R+ +RD  R R  D DQ ++ +   Q    ++ + E     
Sbjct:   338 DRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQEQERDGGRQRDVEKVKERERDGGR 397

Query:   217 ERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRD 252
             +R  E D  R+R+     D   +    +D   R+RD
Sbjct:   398 QRDGERDRERERDGGRQRDEERVRQRERDR-DRERD 432

 Score = 94 (38.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 35/138 (25%), Positives = 58/138 (42%)

Query:   164 QDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             ++RD G  R+ E  R+ +RD  R R  D D+ ++ +   Q           +  R+ + D
Sbjct:   311 RERDGGRQRDGERDRERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDGGRQRDGD 370

Query:   224 MTRDREIDG--TDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDR 281
               +++E DG    D   + +  +D   R+RDG   D  + R+           Q +E DR
Sbjct:   371 RDQEQERDGGRQRDVEKVKERERDG-GRQRDGER-DRERERDGGRQRDEERVRQ-RERDR 427

Query:   282 SIQRREELKKEISHMEER 299
               +R     K   H  ER
Sbjct:   428 DRERDRGNGKHRDHSRER 445

 Score = 90 (36.7 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 26/106 (24%), Positives = 51/106 (48%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ER   ++RD G  R+ +  R+ +RD  R R  + D+ R+ +   Q        +  +  R
Sbjct:   322 ERDRERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQEQERDGGR 381

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTV-DDHQLRE 263
             + +++  ++RE DG         +G+    R+RDG    D+ ++R+
Sbjct:   382 QRDVEKVKERERDGGRQR-----DGERDRERERDGGRQRDEERVRQ 422

 Score = 74 (31.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             ER   ++RD G  R+ E VR  +RD  R+R     + RD  + ++ H R
Sbjct:   402 ERDRERERDGGRQRDEERVRQRERDRDRERDRGNGKHRD-HSREREHRR 449

 Score = 64 (27.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSR----DRFSDEDQGRDLENN-DQGHTRIHDPE 212
             E+   ++RD G  R+ E  R+ +RD  R    +R    ++ RD E +   G  R H  E
Sbjct:   386 EKVKERERDGGRQRDGERDRERERDGGRQRDEERVRQRERDRDRERDRGNGKHRDHSRE 444

 Score = 64 (27.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 27/102 (26%), Positives = 43/102 (42%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             +   ++R++G   +  H     R+  RDR  + +  ++ E  D+G  R       + ER+
Sbjct:   231 KEKEREREEGKKTDRRHAETQQRE--RDREGEREGDKERER-DRGRQR-------DGERQ 280

Query:   220 SELDMTRDREIDGTDDYHTIVDEGKDH---LSRKRDGSTVDD 258
              E D  R R  DG  D     D G+       R+RDG    D
Sbjct:   281 RERDGGRQR--DGERDRERERDGGRQRDGERQRERDGGRQRD 320

 Score = 63 (27.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 24/95 (25%), Positives = 40/95 (42%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             E+   ++  K   R +   +  +RD   +R  D+++ RD      G  R  + +    +R
Sbjct:   232 EKEREREEGKKTDRRHAETQQRERDREGEREGDKERERDRGRQRDGE-RQRERD-GGRQR 289

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDG 253
               E D  R+RE DG           +D   R+RDG
Sbjct:   290 DGERD--RERERDGGRQRDGERQRERDG-GRQRDG 321

 Score = 42 (19.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 28/111 (25%), Positives = 47/111 (42%)

Query:   186 RDRFSDEDQGRDLENN-DQGHT--RIH-DPELANWERKSELDMTRDREIDGTDDYHTIVD 241
             RDR  +++Q ++ E   ++G    R H + +    +R+ E +  ++RE D          
Sbjct:   221 RDRADEQEQLKEKEREREEGKKTDRRHAETQQRERDREGEREGDKERERDRGRQRDGERQ 280

Query:   242 EGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQRREELKKE 292
               +D   R+RDG    D + RE           Q +E D   QR  E  +E
Sbjct:   281 RERDG-GRQRDGER--DRE-RERDGGRQRDGERQ-RERDGGRQRDGERDRE 326


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 173 (66.0 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D E   +VGGL ++ ++ S++  F KYG V+  KI+ DR T R + +GFVTF +  +   
Sbjct:     3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             AI  MNG+ +DGR + V+E   + R+S+ G
Sbjct:    63 AIEAMNGQDLDGRNITVNEA--QSRRSDGG 90


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   243 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 273

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   209 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 252


>UNIPROTKB|J9P250 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
            ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
        Length = 341

 Score = 153 (58.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS + A
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILA 93

Query:    97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRD 127
             +++ NG  I GR +RV  V+  R  K +   D
Sbjct:    94 VDNFNGIKIKGRTIRVDHVSNYRAPKDSEEMD 125

 Score = 79 (32.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI-HDPELANWER 218
             R   +++++   R+ E  RD DRD +R R SD    R      +GH+R           R
Sbjct:   262 REEREEKNRERERQRERERDRDRDRARGRSSDRHSSRH-NGRSEGHSRRGRSRSRERSHR 320

Query:   219 KSELDMTRDREIDGTDD 235
             +     +RDR+     D
Sbjct:   321 RKRARHSRDRDSSNPSD 337

 Score = 59 (25.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 30/117 (25%), Positives = 50/117 (42%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRD-P---SRDRFSDEDQGRDLENNDQGH-----TRIH 209
             ++ S+++ ++G   E   VR H    P   +  R   ED+ R+       H     +R  
Sbjct:   204 KKHSTKNPERGQKSEPREVRKHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSSRRE 263

Query:   210 DPELANWERKSELDMTRDREID---G-TDDYHTIVDEGKD--HLSRKRDGSTVDDHQ 260
             + E  N ER+ + +  RDR+ D   G + D H+    G+   H  R R  S    H+
Sbjct:   264 EREEKNRERERQRERERDRDRDRARGRSSDRHSSRHNGRSEGHSRRGRSRSRERSHR 320


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253

 Score = 39 (18.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query:   161 TSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQG 195
             +SS+D   G    Y   R       RDR   +D+G
Sbjct:   314 SSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQDRG 348

 Score = 37 (18.1 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
 Identities = 16/51 (31%), Positives = 20/51 (39%)

Query:   159 ERTSSQDRD--KGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             +R   QDR     M R Y   RD     SR   +    GR    +D+G  R
Sbjct:   340 DRVGRQDRGLPPSMERGYPPPRDSYSSSSRG--APRGGGRGGSRSDRGGGR 388


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 274


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 176 (67.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     6 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    66 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 94

 Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GRD + +D
Sbjct:   245 RDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSD 275

 Score = 40 (19.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   211 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 254


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/89 (37%), Positives = 52/89 (58%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A +A
Sbjct:     4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R S  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGSRGG 92


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A D 
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R +  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 171 (65.3 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A +A
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R +  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 175 (66.7 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 36/91 (39%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V + ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 53 (23.7 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  + D D  GRD + +D
Sbjct:   241 RDYSHSSSRDDYPSRG-YGDRDGYGRDRDYSD 271


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 169 (64.5 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF +P  A DA
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R +  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 176 (67.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 34/83 (40%), Positives = 53/83 (63%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATR 118
             A  DMNG+++DG+ ++V E AT+
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATK 86

 Score = 51 (23.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  + D D  GRD + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YGDRDGYGRDRDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 176 (67.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 51 (23.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  +SD D  GR+ + +D
Sbjct:   244 RDYGHSSSRDDYPSRG-YSDRDGYGRERDYSD 274

 Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   210 RDDGYSTK-DSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRD 253


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 180 (68.4 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 36/91 (39%), Positives = 56/91 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V E AT+    + GR
Sbjct:    65 AARDMNGKSLDGKAIKV-EQATKPSFESGGR 94

 Score = 46 (21.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query:   172 REYEHVRDHDRDPSR----DRFSDEDQ---GRDLENND 202
             R+Y H    D  PSR      +SD D    GRD + +D
Sbjct:   232 RDYGHSSSRDEYPSRGYSLSSYSDRDGYGGGRDRDYSD 269

 Score = 39 (18.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G   + +     D   SRD        RD    D GH+   D
Sbjct:   198 RDDGYSTK-DGYSSRDYPSSRDTRDYAPPPRDYAYRDYGHSSSRD 241

 Score = 37 (18.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 16/51 (31%), Positives = 20/51 (39%)

Query:   159 ERTSSQDRD--KGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             +R   QDR     M R Y   RD     SR   +    GR    +D+G  R
Sbjct:   334 DRVGRQDRGLPPSMERGYPPPRDSYSSSSRG--APRGGGRGGSRSDRGGGR 382


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 171 (65.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V + ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
                DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 VARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 56 (24.8 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  + D D  GRD E +D
Sbjct:   241 RDYSHSSSRDDYPSRG-YGDRDGYGRDREYSD 271


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 171 (65.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V + ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
                DMNG+++DG+ ++V E AT+     SGR
Sbjct:    65 VARDMNGKSLDGKAIKV-EQATKP-SFESGR 93

 Score = 56 (24.8 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query:   172 REYEHVRDHDRDPSRDRFSDED-QGRDLENND 202
             R+Y H    D  PSR  + D D  GRD E +D
Sbjct:   241 RDYSHSSSRDDYPSRG-YGDRDGYGRDREYSD 271


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 167 (63.8 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A  A
Sbjct:     4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR +RV       R +  G
Sbjct:    64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 166 (63.5 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 39/91 (42%), Positives = 54/91 (59%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRK-SNSGR 126
             +  MNG+ +  RV+  S V+  G   +N  R
Sbjct:    64 MMAMNGK-VRIRVLSRSPVSRMGHPPANPSR 93


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 165 (63.1 bits), Expect = 8.9e-12, P = 8.9e-12
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  +++GGL ++ NE ++   F  +G +  V +V DR T R + + F+TF NP  A DA
Sbjct:     4 EEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGR 120
             +  MNG+++DGR +RV       R
Sbjct:    64 MRPMNGKSLDGRQIRVDHAGKLAR 87


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 179 (68.1 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 34/75 (45%), Positives = 53/75 (70%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             S +++GG+ YS +EDS+R+ F KYG VV  +++ DR T R + +GFVTF +  +A  AI 
Sbjct:    40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query:    99 DMNGRTIDGRVVRVS 113
              ++GR + GRVV+V+
Sbjct:   100 ALDGRDLHGRVVKVN 114


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 162 (62.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
             M+ D E   ++GGL ++ ++  +R  F+KYG +V  K+V D+ S R + +GF+TF   ++
Sbjct:     1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query:    93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
               +AI  MNG  +DGR + V +   +  +  +GRD
Sbjct:    61 MDEAIAAMNGMDLDGRTITVDKA--QPHQGGAGRD 93

 Score = 43 (20.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 28/103 (27%), Positives = 37/103 (35%)

Query:   163 SQDRDKGMGREYEHVRDHDRDPSRDRF--SDEDQGRD-LENNDQGHTRIHDPELANWERK 219
             +Q    G GR+ +  R  DR   RDR   S    G D  +    GH     P  ++ +  
Sbjct:    83 AQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGG 142

Query:   220 SELDMTRDREIDGTDDYHTIVDE-G--KDHLSRKRDG-STVDD 258
                    DR     D Y    D  G  +D    K D  S+ DD
Sbjct:   143 GRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDD 185


>UNIPROTKB|F1PRG0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
            Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
        Length = 326

 Score = 153 (58.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS + A
Sbjct:    33 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILA 92

Query:    97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRD 127
             +++ NG  I GR +RV  V+  R  K +   D
Sbjct:    93 VDNFNGIKIKGRTIRVDHVSNYRAPKDSEEMD 124

 Score = 65 (27.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 23/77 (29%), Positives = 35/77 (45%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ER SS  R++   RE E  R+ +R  S DR S    GR   ++ +G +R  +       R
Sbjct:   254 ERRSSSRREE---RE-EKNRERERGRSSDRHSSRHNGRSEGHSRRGRSRSRERS----HR 305

Query:   219 KSELDMTRDREIDGTDD 235
             +     +RDR+     D
Sbjct:   306 RKRARHSRDRDSSNPSD 322

 Score = 63 (27.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ++ S+++ ++G   E   VR H       + +   +  D E   +     H+   ++  R
Sbjct:   203 KKHSTKNPERGQKSEPREVRKHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSS-RR 261

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKD--HLSRKRDGSTVDDHQ 260
             +   +  R+RE   + D H+    G+   H  R R  S    H+
Sbjct:   262 EEREEKNRERERGRSSDRHSSRHNGRSEGHSRRGRSRSRERSHR 305


>UNIPROTKB|F1P133 [details] [associations]
            symbol:F1P133 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
            IPI:IPI00575891 ProteinModelPortal:F1P133
            Ensembl:ENSGALT00000006408 Uniprot:F1P133
        Length = 166

 Score = 160 (61.4 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + V++GGLPY   E  V  VF +YG VV + +V D+ T + K + F+ + + RS V A
Sbjct:    34 DSAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 93

Query:    97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRD 127
             +++ NG  I GR +RV  VA  R  K +   D
Sbjct:    94 VDNFNGIKIKGRTIRVDHVANYRPPKDSDDLD 125


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 159 (61.0 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA
Sbjct:     4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query:    97 INDMNGR 103
             +  MNG+
Sbjct:    64 MMAMNGK 70


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 158 (60.7 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVD 95
             D+   +YVG LPY   E+ + + F ++G++ +VKIV N R+ R K Y FVT+  P+ AV 
Sbjct:    41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVK 100

Query:    96 AINDMNGRTIDGR--VVRVSE 114
             A+ D +G+ + GR  VVR+++
Sbjct:   101 AL-DAHGKDLQGRSLVVRIAK 120


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 158 (60.7 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVD 95
             D+   +YVG LPY   E+ + + F ++G++ +VKIV N R+ R K Y FVT+  P+ AV 
Sbjct:    41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVK 100

Query:    96 AINDMNGRTIDGR--VVRVSE 114
             A+ D +G+ + GR  VVR+++
Sbjct:   101 AL-DAHGKDLQGRSLVVRIAK 120


>DICTYBASE|DDB_G0294559 [details] [associations]
            symbol:DDB_G0294559 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
            EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
            ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
            KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
        Length = 348

 Score = 133 (51.9 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVGGL Y  NE  V  +F +YG +    +V ++ T R + + FV +   +S V A++++
Sbjct:    35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94

Query:   101 NGRTIDGRVVRVSEVATRGRKSNSGRD 127
             NG  + G+ ++V  V    R   +  D
Sbjct:    95 NGINLLGKTIKVDHVKDYKRPKKNNED 121

 Score = 86 (35.3 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             R +S+DR K   R     RD +RD  R R  D ++ R+ E  D+  +R    +   +  +
Sbjct:   265 RNTSRDRIKDRSRSRSRERDRERDRERYRDRDRNRSREREYRDRSRSRSKSRDRYRYRDR 324

Query:   220 SE----LDMTRDRE 229
             S      D +RDRE
Sbjct:   325 SREREYRDRSRDRE 338

 Score = 76 (31.8 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDR-FSDEDQGRDLENNDQGHTRIHDPELANWE 217
             +R+ S+ R++   R+ E  RD DR+ SR+R + D  + R  ++ D+   R    E    +
Sbjct:   274 DRSRSRSRERDRERDRERYRDRDRNRSREREYRDRSRSRS-KSRDRYRYRDRSREREYRD 332

Query:   218 RKSELDMTRD 227
             R  + +  RD
Sbjct:   333 RSRDRERYRD 342

 Score = 65 (27.9 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
 Identities = 24/102 (23%), Positives = 49/102 (48%)

Query:   218 RKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVK 277
             +K+  D+T D + D  DD ++  D+G D  S   D +  +D+  ++           ++K
Sbjct:   116 KKNNEDLT-DTDDDDDDDNNS--DDGTDDNSDSDDDNNNNDNDEKK-KEKKKRKLEKKLK 171

Query:   278 ELDRSIQRREELKKEISHMEERVNVKEQLVLD---LQKRSKK 316
             +  +  ++R+  + E     E+  + +QL  D   L+K+ KK
Sbjct:   172 KKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRKQDKK 213

 Score = 63 (27.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 24/96 (25%), Positives = 41/96 (42%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN-DQGHTRIHDPELANWER 218
             R    D++K   +     + + R+ SRDR  D  + R  E + ++   R  D +  N  R
Sbjct:   243 RNDRGDQNKSNDKLENRDKHNHRNTSRDRIKDRSRSRSRERDRERDRERYRDRD-RNRSR 301

Query:   219 KSEL-DMTRDREIDGTDDY-HTIVDEGKDHLSRKRD 252
             + E  D +R R     D Y +      +++  R RD
Sbjct:   302 EREYRDRSRSRS-KSRDRYRYRDRSREREYRDRSRD 336

 Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 22/114 (19%), Positives = 44/114 (38%)

Query:   173 EYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRDREIDG 232
             ++E+  D     +    +      D   ND+G     + +L N ++ +  + +RDR  D 
Sbjct:   216 KFENTTDTTTTTTTTTTTSPPSSFDSIRNDRGDQNKSNDKLENRDKHNHRNTSRDRIKDR 275

Query:   233 TDDYHTIVDEGKDHLS-RKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQR 285
             +       D  +D    R RD +   + + R+           + +  DRS +R
Sbjct:   276 SRSRSRERDRERDRERYRDRDRNRSREREYRD-RSRSRSKSRDRYRYRDRSRER 328

 Score = 40 (19.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query:   179 DHDRDPSRDRFSDEDQGRDLENNDQ 203
             D++ D   D  SD D   +  +ND+
Sbjct:   132 DNNSDDGTDDNSDSDDDNNNNDNDE 156

 Score = 39 (18.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query:   179 DHDRDPSRDRFSDEDQGRDLENND 202
             D D D + D  +D++   D +NN+
Sbjct:   128 DDDDDNNSDDGTDDNSDSDDDNNN 151

 Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query:   311 QKRSKKLEEALINAKKLSSHRQKQ 334
             +K+ +KLE+ L   +K    R+++
Sbjct:   160 EKKKRKLEKKLKKKQKREEKRKRR 183


>UNIPROTKB|F1LMQ9 [details] [associations]
            symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
            OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
            Uniprot:F1LMQ9
        Length = 327

 Score = 154 (59.3 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS V A
Sbjct:    33 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 92

Query:    97 INDMNGRTIDGRVVRVSEVA 116
             +++ NG  I GR +RV  VA
Sbjct:    93 VDNFNGIKIKGRTIRVDHVA 112

 Score = 60 (26.2 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
 Identities = 24/106 (22%), Positives = 35/106 (33%)

Query:   159 ERTSSQDRDKGMGREY-EHVRDHDRDPS-RDRFSDEDQGRDLENNDQGHTRIHDPELANW 216
             ++ SS+  ++    E  E  + H   P  R       +  + E   + H   H P     
Sbjct:   201 KKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEKHKHEHKPSSRRE 260

Query:   217 ERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLR 262
               +   D  R R        H    EG+ H SR R  S   D   R
Sbjct:   261 GEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHR 306

 Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 29/120 (24%), Positives = 54/120 (45%)

Query:   234 DDYHTIVDEGK----DHLSRKR---DGSTVDD--HQLREFXXXXXXXXXX--QVKE-LDR 281
             D+++ I  +G+    DH++  R   +   VDD   +L+E             +V E  D 
Sbjct:    94 DNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEKGCGAKTPPSSPPEVSEDEDA 153

Query:   282 SIQRREEL-KKEISHMEERVNVKEQLVLDLQK--RSKKLEEA-LINAKKLSSHRQKQLTK 337
              + ++ +  KKE    +E+   +  +  +L    RSK ++E    +AKK SS   ++  K
Sbjct:   154 KVTKKPKKDKKEKKKKKEKEKTERPVQAELPSCSRSKTVKETDEQSAKKHSSKPSERAQK 213


>RGD|1562693 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
            RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
            STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
            NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
        Length = 328

 Score = 154 (59.3 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS V A
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 93

Query:    97 INDMNGRTIDGRVVRVSEVA 116
             +++ NG  I GR +RV  VA
Sbjct:    94 VDNFNGIKIKGRTIRVDHVA 113

 Score = 60 (26.2 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
 Identities = 24/106 (22%), Positives = 35/106 (33%)

Query:   159 ERTSSQDRDKGMGREY-EHVRDHDRDPS-RDRFSDEDQGRDLENNDQGHTRIHDPELANW 216
             ++ SS+  ++    E  E  + H   P  R       +  + E   + H   H P     
Sbjct:   202 KKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEKHKHEHKPSSRRE 261

Query:   217 ERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLR 262
               +   D  R R        H    EG+ H SR R  S   D   R
Sbjct:   262 GEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHR 307

 Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 29/120 (24%), Positives = 54/120 (45%)

Query:   234 DDYHTIVDEGK----DHLSRKR---DGSTVDD--HQLREFXXXXXXXXXX--QVKE-LDR 281
             D+++ I  +G+    DH++  R   +   VDD   +L+E             +V E  D 
Sbjct:    95 DNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVTRELQEKGCGAKTPPSSPPEVSEDEDA 154

Query:   282 SIQRREEL-KKEISHMEERVNVKEQLVLDLQK--RSKKLEEA-LINAKKLSSHRQKQLTK 337
              + ++ +  KKE    +E+   +  +  +L    RSK ++E    +AKK SS   ++  K
Sbjct:   155 KVTKKPKKDKKEKKKKKEKEKTERPVQAELPSCSRSKTVKETDEQSAKKHSSKPSERAQK 214


>UNIPROTKB|G5E5I0 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
            Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
        Length = 338

 Score = 151 (58.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS V A
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 93

Query:    97 INDMNGRTIDGRVVRVSEVA 116
             +++ NG  I GR +RV  V+
Sbjct:    94 VDNFNGIKIKGRTIRVDHVS 113

 Score = 63 (27.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 28/99 (28%), Positives = 44/99 (44%)

Query:   160 RTSSQDRDKGMGRE---YEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPEL-AN 215
             R+ ++D+++   +E   +EH     R+   DR  + D+GR   ++D  H+R HD      
Sbjct:   240 RSGTEDQEREPRKEKSKHEHKSSSRREEREDRHRERDRGR---SSDI-HSRRHDRRSEGR 295

Query:   216 WERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGS 254
              +R SE    R R     D  H      K   SR R+ S
Sbjct:   296 HDRGSEGRSHRSRS-RSRDKSHR---HKKSRHSRDRESS 330

 Score = 56 (24.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
 Identities = 31/112 (27%), Positives = 43/112 (38%)

Query:   163 SQDRDKGMGREYEHVR-DHDRDPS---RDRFSDEDQGRDLENNDQGH-----TRIHDPEL 213
             S+  +KG   E   VR  H   P      R   EDQ R+       H     +R  + E 
Sbjct:   211 SETGEKGQKSESREVRKSHPSSPEVRMTCRSGTEDQEREPRKEKSKHEHKSSSRREERED 270

Query:   214 ANWER----KSELDMTR-DREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQ 260
              + ER     S++   R DR  +G  D  +   EG+ H SR R       H+
Sbjct:   271 RHRERDRGRSSDIHSRRHDRRSEGRHDRGS---EGRSHRSRSRSRDKSHRHK 319

 Score = 52 (23.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 20/80 (25%), Positives = 32/80 (40%)

Query:   159 ERTSSQDRDKGMGREYE-HVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWE 217
             E    + R++  GR  + H R HDR  S  R     +GR   +  +   + H  + +   
Sbjct:   266 EEREDRHRERDRGRSSDIHSRRHDRR-SEGRHDRGSEGRSHRSRSRSRDKSHRHKKSRHS 324

Query:   218 RKSELDMTRDREIDGTDDYH 237
             R  E   +  RE+     YH
Sbjct:   325 RDRE--SSNPRELR----YH 338


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 173 (66.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/79 (40%), Positives = 55/79 (69%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
             + SV+VG + Y  +ED++R +F K G+V+++K+V+DR T + K YGF+ F + ++A  AI
Sbjct:    17 QRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAI 76

Query:    98 NDMNGRTIDGRVVRVSEVA 116
              ++NG  + GR++RV   A
Sbjct:    77 RNLNGYELSGRILRVDSAA 95


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 49/186 (26%), Positives = 82/186 (44%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXXX 154
             DA++ M+G  +DGR +RV ++A  GR  +S   +                          
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDSHHSRRGPPPRSPRRRRRSRSRSRSRSRSRS 128

Query:   155 XXXXERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELA 214
                  R+ S+ R +   R     R   R  S+ + S   + R   +  +  +R   P ++
Sbjct:   129 RSRYSRSKSRSRTRSRSRSTSKSRSARR--SKSKSSSVSRSRS-RSRSRSRSR-SPPPVS 184

Query:   215 NWERKS 220
               E KS
Sbjct:   185 KRESKS 190


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query:    33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR 91
             KMT+  ++ +YVG L Y    D ++  F +YG +   K++ DR T R K + F+T+G   
Sbjct:    12 KMTMS-QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70

Query:    92 SAVDAINDMNGRTIDGRVVRVS----EVATRGRKSNSG 125
             +A +A++  NG  + GR +RV+        R R   SG
Sbjct:    71 AAQEAVSKANGIDLQGRKIRVNIARENTGDRRRDGGSG 108


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query:    33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR 91
             KMT+  ++ +YVG L Y    D ++  F +YG +   K++ DR T R K + F+T+G   
Sbjct:    12 KMTMS-QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70

Query:    92 SAVDAINDMNGRTIDGRVVRVS----EVATRGRKSNSG 125
             +A +A++  NG  + GR +RV+        R R   SG
Sbjct:    71 AAQEAVSKANGIDLQGRKIRVNIARENTGDRRRDGGSG 108


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 165 (63.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 35/91 (38%), Positives = 54/91 (59%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG VV V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  ++NG+ +DG+ ++V E AT+   S   R
Sbjct:    65 AARELNGKALDGKPIKV-EQATKPSFSTPSR 94

 Score = 46 (21.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query:   166 RDKGM-GRE-YEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G  G++ Y+     D   SRD        RD    D GH+   D
Sbjct:   185 RDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYSYRDYGHSSSRD 231


>WB|WBGene00004703 [details] [associations]
            symbol:rsp-6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0008406 "gonad development"
            evidence=IMP] [GO:0040026 "positive regulation of vulval
            development" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0040027 "negative regulation of vulval development"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
            "regulation of DNA-dependent transcription, termination"
            evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
            GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
            GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
            GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
            HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
            RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
            SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
            STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
            EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
            UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
            WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
            OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
        Length = 179

 Score = 153 (58.9 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 43/169 (25%), Positives = 72/169 (42%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             ++ VYVGGLP  A    + ++FD++G +  V +   R   G  + FV + + R A DA+ 
Sbjct:     2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVA--RRPPG--FAFVEYDDVRDAEDAVR 57

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 158
              ++G  I G   RV E++T  R+   GR                                
Sbjct:    58 ALDGSRICGVRARV-ELSTGQRRGGGGRG---GGFGGRGGGGRDRSPYRGDRGRSRSRSR 113

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             +R   + RD+   R  +  RD  R+ SR+R     + R  +  D+ H++
Sbjct:   114 DRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSK 162


>UNIPROTKB|Q18409 [details] [associations]
            symbol:rsp-6 "Probable splicing factor,
            arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
            [GO:0007275 "multicellular organismal development" evidence=IGI]
            [GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
            splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
            GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
            GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
            GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
            GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
            PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
            ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
            MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
            EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
            KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
            WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
            eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
            NextBio:897392 Uniprot:Q18409
        Length = 179

 Score = 153 (58.9 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 43/169 (25%), Positives = 72/169 (42%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             ++ VYVGGLP  A    + ++FD++G +  V +   R   G  + FV + + R A DA+ 
Sbjct:     2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVA--RRPPG--FAFVEYDDVRDAEDAVR 57

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 158
              ++G  I G   RV E++T  R+   GR                                
Sbjct:    58 ALDGSRICGVRARV-ELSTGQRRGGGGRG---GGFGGRGGGGRDRSPYRGDRGRSRSRSR 113

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             +R   + RD+   R  +  RD  R+ SR+R     + R  +  D+ H++
Sbjct:   114 DRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSK 162


>UNIPROTKB|G3X6K3 [details] [associations]
            symbol:LOC534630 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
            GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
            RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
            GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
        Length = 330

 Score = 147 (56.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS V A
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLA 93

Query:    97 INDMNGRTIDGRVVRVSEVA 116
             +++ NG  I GR +RV  V+
Sbjct:    94 VDNFNGIKIKGRTIRVDHVS 113

 Score = 64 (27.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 30/101 (29%), Positives = 46/101 (45%)

Query:   163 SQDRDKGMGRE---YEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             ++DR+K   +E   +EH     R+   DR  + D+GR   ++D  H+R HD       R+
Sbjct:   243 TEDREKEPRKEKSKHEHKSSSRREEREDRHRERDRGR---SSDI-HSRRHD-------RR 291

Query:   220 SELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQ 260
             SE    R R     D  H    +   H SR R+ S   +H+
Sbjct:   292 SEGRTHRSRS-RSRDKSHR--HKRSRH-SRDRESSNPREHR 328

 Score = 44 (20.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 15/69 (21%), Positives = 24/69 (34%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             E  SS  R++   R  E  R    D    R     +GR   +  +   + H  + +   R
Sbjct:   258 EHKSSSRREEREDRHRERDRGRSSDIHSRRHDRRSEGRTHRSRSRSRDKSHRHKRSRHSR 317

Query:   219 KSELDMTRD 227
               E    R+
Sbjct:   318 DRESSNPRE 326


>MGI|MGI:1919414 [details] [associations]
            symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
            HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
            EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
            ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
            PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
            GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
            NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
            GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
        Length = 326

 Score = 150 (57.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 29/76 (38%), Positives = 47/76 (61%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             ++VGGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS V A+++ 
Sbjct:    38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query:   101 NGRTIDGRVVRVSEVA 116
             NG  I GR +RV  V+
Sbjct:    98 NGIKIKGRTIRVDHVS 113

 Score = 60 (26.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 25/106 (23%), Positives = 42/106 (39%)

Query:   162 SSQDRDKGMGREY-EHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKS 220
             SS+  ++    E+ E  + H   P   R S   +  D E   +     H+ + A+     
Sbjct:   205 SSKTSERAQKSEHRESKKSHSGSPD-GRSSYHARAEDPECKARKEKPKHEHKSASRREAE 263

Query:   221 ELDMTRDR-EIDGTDD-YHTIVDEGKDHLSRKRDGSTVDDHQLREF 264
             E    R+R    GT    H    +G+ H SR R  S    H+ +++
Sbjct:   264 EKSRERERGRSSGTHSGRHRGHSDGRSHRSRSRSRSPDKSHRHKKY 309


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 152 (58.6 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + +++GGL +   +D +R+ F +YG++    +V DR T R + +GFV F +   A  A+ 
Sbjct:     2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
              MN +  DGR++RV + + R    N G
Sbjct:    62 AMNNQEFDGRIIRVDKASERPAARNGG 88


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 152 (58.6 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             S +YVG L Y   +  + + F  YG+V + ++V DR+T R + +GFV  G+ + A  AI 
Sbjct:     3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
              +NG+ +DGR + V+E     R+  SG
Sbjct:    63 GLNGKEMDGRNLMVNEARPPERRGGSG 89


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 152 (58.6 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 32/91 (35%), Positives = 58/91 (63%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             S ++VGGL +  ++ S+++ F  +G V    ++ DR T R + +GFV+F    SA +AI 
Sbjct:    35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             +M+G+ ++GR +RV+ +AT   +S++ R  F
Sbjct:    95 EMDGKELNGRQIRVN-LATE--RSSAPRSSF 122


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 151 (58.2 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 151 (58.2 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>DICTYBASE|DDB_G0291966 [details] [associations]
            symbol:DDB_G0291966 "CCHC-type zinc finger-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
            ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
            eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
            EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
            InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
        Length = 312

 Score = 168 (64.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 72/283 (25%), Positives = 114/283 (40%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAIND 99
             S+Y+G L     + ++   F KYG++      ND + T G+CY FV +   R A DA+  
Sbjct:     2 SLYIGRLSVETTQKNLNDHFSKYGTITR----NDVKKTNGRCYAFVEYKERRDADDALKA 57

Query:   100 MNGRTIDGRVVRVSEVATRGRKSNS------GRD-QFXXXXXXXXXXXXXXXXXXXXXXX 152
             +NG T+    + V E A  G+ +++      G++  +                       
Sbjct:    58 LNGTTLLNSKISV-EWAKGGKNADNNKCFACGQEGHWIKSCPNGGKKRSRDRSLSRSHSR 116

Query:   153 XXXXXXERTSSQDR-DKGMGREYEHVRDHDRDPSRDRFS---DE-DQGRDLENN---DQG 204
                    R+ S DR D+   R  +  RD  RD SRDR     D  D+ RD   +   ++ 
Sbjct:   117 DRRSRRYRSPSWDRRDRSRDRSRDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRDGRRERS 176

Query:   205 HTRIHDPEL-ANWERKSELDMTRDREIDGTDDYHTIV-DEGKDHL-----SRKRDGSTVD 257
               R  D    A   R +  D +RDR  D + D   I+ D  +D        R RD S  +
Sbjct:   177 RDRSRDRSRDARRNRDTSRDRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRSRSN 236

Query:   258 DHQLREFXXXXXXXXXXQVKELDRSIQRREELKKEISHMEERV 300
                 R            + +  DRS   ++E K++ S  +ER+
Sbjct:   237 GGGSRYSSRRDRSRDRSRDRSRDRSRSLKKEKKRDSSLSKERI 279


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 163 (62.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG VV V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATR 118
             A  ++NG+ +DG+ ++V E AT+
Sbjct:    65 AARELNGKALDGKPIKV-EQATK 86

 Score = 45 (20.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query:   166 RDKGM-GRE-YEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD 210
             RD G  G++ Y+     D   SRD        RD    D GH+   D
Sbjct:   185 RDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYAYRDYGHSSSRD 231


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 149 (57.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL ++  E ++   F  +G +  V +V D  TR  + +GF+TF NP  A +A
Sbjct:     4 EEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNA 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +   NG ++DGR + V       R +  G
Sbjct:    64 MRATNGESLDGRQIHVDHAGKSARGTRGG 92


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 149 (57.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query:    45 GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR 103
             G +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ ++NGR
Sbjct:     2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61

Query:   104 TIDGRVVRVSEVATRGRK 121
                GR +RV   A+   K
Sbjct:    62 EFSGRALRVDNAASEKNK 79


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 149 (57.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 39/120 (32%), Positives = 71/120 (59%)

Query:     3 CRE-GG--RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKV 59
             C + GG  RQ +S++  VP+ + ++ +L   R+  T      +++GGL +  ++ S+R  
Sbjct:     4 CNKLGGLLRQNISSNGNVPVTS-MLGSL---RLMST-----KLFIGGLSWGTDDASLRDA 54

Query:    60 FDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118
             F  +G VV  K++ DR T R + +GFV F +  +A  AI++M+G+ ++GR +RV+    R
Sbjct:    55 FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 148 (57.2 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 29/77 (37%), Positives = 47/77 (61%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
             ES ++VGGL +   E  +   FD+YG +   +I+  R T R + +GF+TF + R A DAI
Sbjct:    11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query:    98 NDMNGRTIDGRVVRVSE 114
               M+GR +  +V+ V++
Sbjct:    71 KHMHGRELGNKVISVNK 87

 Score = 56 (24.8 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query:   164 QDR--DKGMGREYEHVRDHDR--DPSRDRFSDEDQGRD-LENNDQGHTRIHDP 211
             +DR  D+ + RE E  R+ DR  D  RDR       RD  ++ D+   R H P
Sbjct:   157 RDRYGDRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYP 209

 Score = 55 (24.4 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
 Identities = 34/97 (35%), Positives = 44/97 (45%)

Query:   160 RTSSQDRDKGMGREYEHVRDH---DR-DPSRDRFSDEDQG---RDLENNDQGHTRIHDPE 212
             R S +DR    G +YE  RDH   +R  P  DRF  +  G     LEN  +G  R +D +
Sbjct:   189 RYSYRDRFDS-GDKYEP-RDHYPFERYAPPGDRFVSDRYGMPEHHLENEYRGRERSYDRD 246

Query:   213 LANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSR 249
                + R      T DR   G  D   I DEG+ + SR
Sbjct:   247 --RYARD-----TSDRY--G--DMGPIRDEGRPYRSR 272

 Score = 47 (21.6 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 22/71 (30%), Positives = 29/71 (40%)

Query:   181 DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRDREIDGTDDYHTIV 240
             D D  RDR+ D D  R+ E  ++   R  D      +R       RDR  D  D Y    
Sbjct:   152 DIDGHRDRYGDRDLERERER-EREFDRYMD---GRRDRDGGRYSYRDR-FDSGDKY---- 202

Query:   241 DEGKDHLSRKR 251
              E +DH   +R
Sbjct:   203 -EPRDHYPFER 212

 Score = 45 (20.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query:   171 GREYEHVRD-HDRDPSRDRFSD----EDQGRDLENNDQGHTRIHDP 211
             GRE  + RD + RD S DR+ D     D+GR   +    + R   P
Sbjct:   238 GRERSYDRDRYARDTS-DRYGDMGPIRDEGRPYRSRPGPYDRPSRP 282


>UNIPROTKB|A6NDE4 [details] [associations]
            symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
            family 1 member B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
            IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
            ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
            PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
            UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
            neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
            InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
            NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
            Genevestigator:A6NDE4 Uniprot:A6NDE4
        Length = 496

 Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93

 Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%)

Query:   166 RDKGMGREYE-HVRDH-DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             RD G  R  E + R + +R  SR+        R     D GH+R H+     +       
Sbjct:   278 RDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSR 337

Query:   224 MTRDREIDGTD----DY-HTIVDEGKDHLSR 249
              TRD      D    DY H+  DE   H SR
Sbjct:   338 ETRDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>UNIPROTKB|A6NEQ0 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
            ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
            PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
            Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
            UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
            neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
            GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
            Genevestigator:A6NEQ0 Uniprot:A6NEQ0
        Length = 496

 Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93

 Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%)

Query:   166 RDKGMGREYE-HVRDH-DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             RD G  R  E + R + +R  SR+        R     D GH+R H+     +       
Sbjct:   278 RDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSR 337

Query:   224 MTRDREIDGTD----DY-HTIVDEGKDHLSR 249
              TRD      D    DY H+  DE   H SR
Sbjct:   338 ETRDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>UNIPROTKB|P0C7P1 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
            ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
            DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
            Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
            UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
            neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
            OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
            Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
        Length = 496

 Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93

 Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%)

Query:   166 RDKGMGREYE-HVRDH-DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             RD G  R  E + R + +R  SR+        R     D GH+R H+     +       
Sbjct:   278 RDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSR 337

Query:   224 MTRDREIDGTD----DY-HTIVDEGKDHLSR 249
              TRD      D    DY H+  DE   H SR
Sbjct:   338 ETRDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>UNIPROTKB|P0DJD3 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
            InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
            EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
            PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
            DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
            Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
            GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
            neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
            Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
            Uniprot:P0DJD3
        Length = 496

 Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93

 Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%)

Query:   166 RDKGMGREYE-HVRDH-DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             RD G  R  E + R + +R  SR+        R     D GH+R H+     +       
Sbjct:   278 RDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSR 337

Query:   224 MTRDREIDGTD----DY-HTIVDEGKDHLSR 249
              TRD      D    DY H+  DE   H SR
Sbjct:   338 ETRDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>UNIPROTKB|P0DJD4 [details] [associations]
            symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
            family 1 member C" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
            CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
            EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
            EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
            GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
            Uniprot:P0DJD4
        Length = 496

 Score = 164 (62.8 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAQKPSFQSGGR 93

 Score = 47 (21.6 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%)

Query:   166 RDKGMGREYE-HVRDH-DRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             RD G  R  E + R + +R  SR+        R     D GH+R H+     +       
Sbjct:   278 RDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSR 337

Query:   224 MTRDREIDGTD----DY-HTIVDEGKDHLSR 249
              TRD      D    DY H+  DE   H SR
Sbjct:   338 ETRDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>UNIPROTKB|E2R1C1 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
            Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
        Length = 435

 Score = 169 (64.5 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    81 LNGREFSGRALRVDNAASEKNK 102


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 30/72 (41%), Positives = 44/72 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGR-TID 106
             A  DMNG+ T+D
Sbjct:    65 AARDMNGKMTVD 76


>TAIR|locus:2164042 [details] [associations]
            symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0006457 "protein folding"
            evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
            ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
            GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
            HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
            ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
        Length = 169

 Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + +YVGGLP++  ++ +   F ++G ++ V +V DR T R + YGFVTF +  SA  A  
Sbjct:    13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 128
             D N  TI+GR+    ++A  G K    + Q
Sbjct:    73 DPNP-TIEGRITNC-KLAFVGAKVKPNQSQ 100


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 139 (54.0 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    94 DPNPN-IDGRKANVN-LAYLGAKPRS 117

 Score = 39 (18.8 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQGRDLENNDQG 204
             R Y H+R     P   RF      R+ E ++ G
Sbjct:   136 RTYGHLRVSQNHPLLRRFRSRIAFREWERDELG 168


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 28/87 (32%), Positives = 53/87 (60%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAI 97
             ++ +YV GL +   ED++R  F+++G+++ + +V D+ + R K + F+ +     A+ AI
Sbjct:    76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNS 124
               M+G+ +DGRV+ V E  TR   S +
Sbjct:   136 QGMHGKFLDGRVIFVEEAKTRSDMSRA 162


>UNIPROTKB|J9P8Y3 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
            EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
        Length = 558

 Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|Q15415 [details] [associations]
            symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
            [GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
            MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
            EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
            EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
            RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
            HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
            PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
            DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
            Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
            KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
            CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
            HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
            PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
            NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
            Uniprot:Q15415
        Length = 496

 Score = 161 (61.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG ++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGTSLHGKAIKV-EQAKKPSFQSGGR 93

 Score = 48 (22.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 24/89 (26%), Positives = 33/89 (37%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMT 225
             RD+   R Y   R+H        ++   +G      D GH+R H+     +        T
Sbjct:   285 RDESYSRGY---RNHRSSRETREYAPPSRGHGYR--DYGHSRRHESYSRGYRNHPSSRET 339

Query:   226 RDREIDGTD----DY-HTIVDEGKDHLSR 249
             RD      D    DY H+  DE   H SR
Sbjct:   340 RDYAPPHRDYAYRDYGHSSWDE---HSSR 365


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 156 (60.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 52/213 (24%), Positives = 85/213 (39%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + +++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRK-----SNSGRDQFXXXXXXXXXXXXXXXXXXXX 149
             DA++ M+G  +DGR +RV ++A  GR      S  G                        
Sbjct:    70 DAMDAMDGALLDGRELRV-QMARYGRPPDAHYSRRGAPPRRYGGYGRRSRSRSPRRRKHS 128

Query:   150 XXXXXXXXXERTSSQDR-DKGMGREYEHVRDHDRD------PSRDRFSDEDQGRDLENND 202
                       R+ S+ R  +   R Y   R   R       P R +     + R   +  
Sbjct:   129 RSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRS-RSKS 187

Query:   203 QGHTRIHDPELANWERKSELDMTRDREIDGTDD 235
             + H+R   P      +      +R +  + TDD
Sbjct:   188 KSHSRSRTPRSNKGSKSRSRSRSRPKSPEATDD 220


>UNIPROTKB|F1SD01 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
            RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
            Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
            Uniprot:F1SD01
        Length = 615

 Score = 169 (64.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|Q9H0L4 [details] [associations]
            symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
            variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
            EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
            RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
            SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
            PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
            PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
            Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
            CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
            MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
            InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
            NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
            GermOnline:ENSG00000177613 Uniprot:Q9H0L4
        Length = 616

 Score = 169 (64.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|I3LK87 [details] [associations]
            symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
            Uniprot:I3LK87
        Length = 312

 Score = 143 (55.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 32/95 (33%), Positives = 54/95 (56%)

Query:    38 DESSVYVGGLPYSANEDSVRKVF---DKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
             D + +++GGLPY   E  +  VF   ++YG +V + +V D+ T + K + F+ + + RS 
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 93

Query:    94 VDAINDMNGRTIDGRVVRVSEVAT-RGRKSNSGRD 127
             V A+++ NG  I GR +RV  V+  R  K +   D
Sbjct:    94 VLAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEETD 128

 Score = 60 (26.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query:   163 SQDRDKGMGRE---YEHVRDHDRDPSRDRFSDEDQGRDLENN-DQGHT-RIHDPELANWE 217
             ++DRD    +E   +EH     R+   ++  D D+GR   N   +GH+ R          
Sbjct:   232 AEDRDWEPRKEKLKHEHKSSSKREEREEKNRDRDRGRGRHNGRSEGHSHRSRSGSRDKSH 291

Query:   218 RKSELDMTRDREIDGTDD 235
             R      +R+RE     D
Sbjct:   292 RHKRARHSRERESSNPSD 309

 Score = 57 (25.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRDRE 229
             RE    ++ DRD  R R +   +G    +      + H  + A   R+ E     DR+
Sbjct:   254 REEREEKNRDRDRGRGRHNGRSEGHSHRSRSGSRDKSHRHKRARHSRERESSNPSDRD 311

 Score = 46 (21.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
 Identities = 36/173 (20%), Positives = 63/173 (36%)

Query:   168 KGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRD 227
             KG     +HV ++ R P +D    +D  ++L+    G    H P  ++ E   +   T+ 
Sbjct:   106 KGRTIRVDHVSNY-RAP-KDSEETDDVTKELQERGCG---AHTPSQSSSESSEDDKPTKK 160

Query:   228 REIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQRRE 287
              + D            K+   RK+D    D   L E             KE D    ++ 
Sbjct:   161 HKKDK-----------KEKKKRKKDKEKTDQEVLAEQPASSSSPRSKMTKEKDDPGSKKH 209

Query:   288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLE---EALINAKKLSSHRQKQLTK 337
               K   S   ++   +E+ +       +  E   E L +  K SS R+++  K
Sbjct:   210 SGKN--SERGQKSESREKTICHDGAEDRDWEPRKEKLKHEHKSSSKREEREEK 260


>RGD|1310026 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
            2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
            ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
            Uniprot:B5DFH8
        Length = 629

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|G3MZ78 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
            EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
        Length = 632

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>MGI|MGI:1932622 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
            subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
            OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
            EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
            RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
            SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
            REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
            Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
            UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
            Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
        Length = 632

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|Q9Y388 [details] [associations]
            symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
            EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
            EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
            ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
            PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
            Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
            CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
            neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
            InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
            NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
            Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
        Length = 322

 Score = 151 (58.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +++GGLPY   E  +  VF +YG +V + +V D+ T + K + F+ + + RS + A
Sbjct:    34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILA 93

Query:    97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRD 127
             +++ NG  I GR +RV  V+  R  K +   D
Sbjct:    94 VDNFNGIKIKGRTIRVDHVSNYRAPKDSEEID 125

 Score = 51 (23.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 24/105 (22%), Positives = 42/105 (40%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDP-SRDRFSD--EDQGRDLENNDQGHTRIHDPELAN 215
             ++ SS++ ++    E    R+  + P SR  +S   ED  R+L+     H          
Sbjct:   203 KKHSSKNSERAQKSE---PREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREA 259

Query:   216 WERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQ 260
              E K+ +   R R  D    ++    EG+ + SR R       H+
Sbjct:   260 REEKTRI-RDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSHRHK 303

 Score = 47 (21.6 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 17/72 (23%), Positives = 27/72 (37%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDR--DPSRDRFSDEDQGRDLENNDQGHTRIHDPELANW 216
             E  SS  R+     E   +RD  R  D     ++   +GR   +  +   + H  + A  
Sbjct:   250 EHKSSSRREAR--EEKTRIRDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSHRHKRARR 307

Query:   217 ERKSELDMTRDR 228
              R+ E     DR
Sbjct:   308 SRERESSNPSDR 319


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRK 121
             A  DMNG+ +      + +   R  K
Sbjct:    67 AARDMNGKGVPSSTRFLQQFKPRSTK 92


>TAIR|locus:4515103555 [details] [associations]
            symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
            UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
            EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
            TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
            Genevestigator:Q1G378 Uniprot:Q1G378
        Length = 175

 Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + +YVGGLP+    + +R  F+++G ++ V +V DR T R + YGFVTF +  SA  A  
Sbjct:    52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 128
             +     IDGR  + +     GR +N+   Q
Sbjct:   112 NPKP-VIDGREAKCNLAYIGGRVNNNQNAQ 140


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 159 (61.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    +E S+   F KYG +  V ++ DR T + + + F+TF +P  A  
Sbjct:     5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A+ DMNG+++DG+ ++V++ AT+     SGR
Sbjct:    65 AVRDMNGKSLDGKAIKVAQ-ATKPA-FESGR 93

 Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQ--GRDLENND 202
             R+Y H    D  PSR  + D D   GRD +  D
Sbjct:   244 RDYGHSSARDECPSRG-YGDRDGYGGRDRDYAD 275


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64

Query:    96 AINDMNGRTI 105
             A  DMNG+ +
Sbjct:    65 AARDMNGKLL 74


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A D
Sbjct:     7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66

Query:    96 AINDMNGR 103
             A  DMNG+
Sbjct:    67 AARDMNGK 74


>TAIR|locus:2164082 [details] [associations]
            symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
            ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
            GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
            InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
            ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
        Length = 100

 Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 34/94 (36%), Positives = 49/94 (52%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D E+ +YV GLP+    + +   F+++G +V  K+V D +T R K +GFVTF    SA  
Sbjct:     6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             A  + N  TIDGR V         R  N   +Q+
Sbjct:    66 ACENPN-HTIDGRTVNCKLAYLGARVHNYQPNQY 98


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
            symbol:MAL13P1.338 "u1 small nuclear
            ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
            [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
            InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
            ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
            GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
            HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
        Length = 423

 Score = 137 (53.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 27/87 (31%), Positives = 50/87 (57%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
             +T D + ++++G L Y  +E  ++K F+ YG +  VKI+ D++ + + Y F+ F + +S 
Sbjct:    92 LTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSM 151

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGR 120
              DA    +G+ I+ R + V     RGR
Sbjct:   152 NDAYKLADGKKIENRRILVD--IERGR 176

 Score = 69 (29.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query:   159 ERTSSQDRDKGMG---REYEHVR--DHDRDPSRDRFSDEDQGRDLENNDQGH 205
             ER +  D D G+    R+Y+H R  DH R   RDR     + R  E++D+ H
Sbjct:   236 ERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR---RHRSRRSESSDRHH 284

 Score = 58 (25.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 28/102 (27%), Positives = 39/102 (38%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             R S +DR     R     R H +   RDR S +D+ R+  +    H + HD     ++R 
Sbjct:   264 RGSKRDRRHRSRRSESSDRHHHKHRRRDR-SRDDRDRNYYDRHGRHDK-HDRH-DKYDRN 320

Query:   220 SELDMTRDREIDGTDDY--HTIVDEGKDHLSRKRDGSTVDDH 259
              + D  R  + D  D Y  H   D   D   R       D H
Sbjct:   321 DKYD--RHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRH 359

 Score = 57 (25.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 32/104 (30%), Positives = 42/104 (40%)

Query:   162 SSQDRDKGM----GREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI--HDPELAN 215
             S  DRD+      GR  +H R HD+    D++   D+  D  +    H R   HD     
Sbjct:   293 SRDDRDRNYYDRHGRHDKHDR-HDKYDRNDKYDRHDK-YDRHDKYDKHDRYDRHD----K 346

Query:   216 WERKSELDMTRDREIDGTDDYHTIVDEGKDHLS-RKRDGSTVDD 258
             ++R +  D   DR  D  D Y       K H S    D ST DD
Sbjct:   347 YDRHNRHDKY-DRH-DRHDKYDR---HDKHHNSDNPYDNSTKDD 385

 Score = 53 (23.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query:   159 ERTSSQDR-DKGMGREYEHVRDHDRDPS-RDRFSDEDQGRDLENNDQGHTRIHD 210
             ++    DR DK    +  H  D+  D S +D    E++  D+++ND  + R H+
Sbjct:   354 DKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHN 407

 Score = 47 (21.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 21/75 (28%), Positives = 28/75 (37%)

Query:   186 RDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMT-RDREIDGTDDYHTIVDEGK 244
             R+   DED G      D  H R  D       R S+ D   R R  + +D +H      +
Sbjct:   237 RNNDDDEDDGISSTMRDYKHHRSDDHR-----RGSKRDRRHRSRRSESSDRHHH-KHRRR 290

Query:   245 DHLSRKRDGSTVDDH 259
             D     RD +  D H
Sbjct:   291 DRSRDDRDRNYYDRH 305

 Score = 37 (18.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query:   226 RDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLR 262
             RD +   +DD+       + H SR+ + S    H+ R
Sbjct:   252 RDYKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR 288


>UNIPROTKB|Q8ID37 [details] [associations]
            symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
            snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
            InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
            ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
            GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
            HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
        Length = 423

 Score = 137 (53.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 27/87 (31%), Positives = 50/87 (57%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
             +T D + ++++G L Y  +E  ++K F+ YG +  VKI+ D++ + + Y F+ F + +S 
Sbjct:    92 LTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSM 151

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGR 120
              DA    +G+ I+ R + V     RGR
Sbjct:   152 NDAYKLADGKKIENRRILVD--IERGR 176

 Score = 69 (29.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query:   159 ERTSSQDRDKGMG---REYEHVR--DHDRDPSRDRFSDEDQGRDLENNDQGH 205
             ER +  D D G+    R+Y+H R  DH R   RDR     + R  E++D+ H
Sbjct:   236 ERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR---RHRSRRSESSDRHH 284

 Score = 58 (25.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 28/102 (27%), Positives = 39/102 (38%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             R S +DR     R     R H +   RDR S +D+ R+  +    H + HD     ++R 
Sbjct:   264 RGSKRDRRHRSRRSESSDRHHHKHRRRDR-SRDDRDRNYYDRHGRHDK-HDRH-DKYDRN 320

Query:   220 SELDMTRDREIDGTDDY--HTIVDEGKDHLSRKRDGSTVDDH 259
              + D  R  + D  D Y  H   D   D   R       D H
Sbjct:   321 DKYD--RHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRH 359

 Score = 57 (25.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 32/104 (30%), Positives = 42/104 (40%)

Query:   162 SSQDRDKGM----GREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI--HDPELAN 215
             S  DRD+      GR  +H R HD+    D++   D+  D  +    H R   HD     
Sbjct:   293 SRDDRDRNYYDRHGRHDKHDR-HDKYDRNDKYDRHDK-YDRHDKYDKHDRYDRHD----K 346

Query:   216 WERKSELDMTRDREIDGTDDYHTIVDEGKDHLS-RKRDGSTVDD 258
             ++R +  D   DR  D  D Y       K H S    D ST DD
Sbjct:   347 YDRHNRHDKY-DRH-DRHDKYDR---HDKHHNSDNPYDNSTKDD 385

 Score = 53 (23.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query:   159 ERTSSQDR-DKGMGREYEHVRDHDRDPS-RDRFSDEDQGRDLENNDQGHTRIHD 210
             ++    DR DK    +  H  D+  D S +D    E++  D+++ND  + R H+
Sbjct:   354 DKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHN 407

 Score = 47 (21.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 21/75 (28%), Positives = 28/75 (37%)

Query:   186 RDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMT-RDREIDGTDDYHTIVDEGK 244
             R+   DED G      D  H R  D       R S+ D   R R  + +D +H      +
Sbjct:   237 RNNDDDEDDGISSTMRDYKHHRSDDHR-----RGSKRDRRHRSRRSESSDRHHH-KHRRR 290

Query:   245 DHLSRKRDGSTVDDH 259
             D     RD +  D H
Sbjct:   291 DRSRDDRDRNYYDRH 305

 Score = 37 (18.1 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query:   226 RDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLR 262
             RD +   +DD+       + H SR+ + S    H+ R
Sbjct:   252 RDYKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR 288


>UNIPROTKB|B7ZMD9 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
            HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
            SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
        Length = 459

 Score = 164 (62.8 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93


>UNIPROTKB|J3KPK3 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
            Ensembl:ENST00000382658 Uniprot:J3KPK3
        Length = 459

 Score = 164 (62.8 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG+++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGKSLHGKAIKV-EQAKKPSFQSGGR 93


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 164 (62.8 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 164 (62.8 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>WB|WBGene00016245 [details] [associations]
            symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
            eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
            HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
            RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
            SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
            STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
            KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
            InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
        Length = 302

 Score = 148 (57.2 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 27/82 (32%), Positives = 51/82 (62%)

Query:    35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
             T  D + +Y+GGL Y+ +E  V  VF +YG V+ + ++ D+ T + K + F+ + + RS 
Sbjct:    33 TYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRST 92

Query:    94 VDAINDMNGRTIDGRVVRVSEV 115
             + A+++ NG ++  R++RV  V
Sbjct:    93 ILAVDNFNGISLHKRMIRVDHV 114

 Score = 49 (22.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query:   286 REELKKEISHMEERVNVKEQLVLDL----QKRSKKLEEALINAKKLSSHRQKQLTKLYK 340
             RE    E+   E+R+   ++++LD+    ++  KK+++    AKK     +K+  K+ K
Sbjct:   145 REAAPMEVQ--EQRIKKAKEVLLDIGDVDEELLKKIKKDKKKAKKEKKREKKRAKKIRK 201

 Score = 37 (18.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query:   193 DQGRDLENNDQGHTRIHDPELANWERKSEL-DMTRDRE 229
             D G+  E  +  H    D E A+W R  E+  + R+RE
Sbjct:   238 DFGKKKEVEEVKHNPRPDFEKADW-RDIEIWKVIRERE 274


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 164 (62.8 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 164 (62.8 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 158 (60.7 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             S ++VGG+ YS +E  +R+ F KYG VV  KI+ DR T R + + FVTF +   A +A+ 
Sbjct:    34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93

Query:    99 DMNGRTIDGRVVRVSEVATRG 119
              ++G+ + GR +RV+    RG
Sbjct:    94 -LDGQDLHGRRIRVNYATERG 113


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E  ++VGGL +++++ ++      +  +  V IV DR T R + +GF+TF NP  A + 
Sbjct:     4 EEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNV 63

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +  MNG ++DGR + V       + +  G
Sbjct:    64 MRAMNGESLDGRQIHVDHAGKSAQGTRRG 92


>ZFIN|ZDB-GENE-031118-2 [details] [associations]
            symbol:cstf2 "cleavage stimulation factor, 3'
            pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
            UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
            STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
            InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
            Uniprot:Q6P0U7
        Length = 488

 Score = 163 (62.4 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    85 LNGREFSGRALRVDNAASEKNK 106


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 164 (62.8 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 164 (62.8 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|E2RP40 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
            RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
            KEGG:cfa:492015 Uniprot:E2RP40
        Length = 577

 Score = 164 (62.8 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|P33240 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IDA]
            [GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006369 "termination of RNA polymerase II transcription"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
            Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
            EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
            PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
            PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
            DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
            PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
            Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
            KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
            HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
            neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
            OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
            GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
            CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
            Uniprot:P33240
        Length = 577

 Score = 164 (62.8 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|Q5RDA3 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISS]
            [GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
            ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
            KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
        Length = 577

 Score = 164 (62.8 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>MGI|MGI:1343054 [details] [associations]
            symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
            subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
            EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
            UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
            PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
            PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
            GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
            GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
            Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
            GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
        Length = 580

 Score = 164 (62.8 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|E1BVJ6 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
            Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
        Length = 592

 Score = 164 (62.8 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|F1MVI1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
            IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
            Uniprot:F1MVI1
        Length = 592

 Score = 164 (62.8 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|I3LE23 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
            KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
            Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
        Length = 592

 Score = 164 (62.8 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|E7EWR4 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
            EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
            ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
            UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
            Uniprot:E7EWR4
        Length = 597

 Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|E1C8T0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
            IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
            Uniprot:E1C8T0
        Length = 608

 Score = 164 (62.8 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>UNIPROTKB|E1BSR5 [details] [associations]
            symbol:RBM25 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
            PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
            GO:GO:0005737 GO:GO:0006915 GO:GO:0000166 GO:GO:0016607
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 Gene3D:1.20.1390.10
            GO:GO:0000381 OMA:EDINAME SUPFAM:SSF101233
            GeneTree:ENSGT00700000104356 EMBL:AADN02033574 EMBL:AADN02033573
            IPI:IPI00591819 Ensembl:ENSGALT00000015198 Uniprot:E1BSR5
        Length = 782

 Score = 138 (53.6 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
 Identities = 43/147 (29%), Positives = 68/147 (46%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSD--EDQGRDLENN-DQGHTRIHDPELAN 215
             ER   +DRD+   R+ +  RD DRD  R+R SD  +D+ R  E + D+   R  + E   
Sbjct:   291 ERERDRDRDRTKDRDRDRERDRDRDRDRERSSDRNKDRSRSREKSRDRERERERERERER 350

Query:   216 W-ERKSELDMTRDREIDGTDDYHTIVDEGKDH--LSRK-RDGSTVDDHQLREFXXXXXXX 271
               ER+ E +  R+RE D   D     ++  +   L RK R+       +L+ +       
Sbjct:   351 EREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKK 410

Query:   272 XXXQVKELDRSIQRREELKKEISHMEE 298
                  KE +R  +RR E+ KE   ++E
Sbjct:   411 SREYEKEAEREEERRREMAKEAKRLKE 437

 Score = 101 (40.6 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
 Identities = 45/187 (24%), Positives = 85/187 (45%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQGRDLENN-DQGHTRIHDPELANWERKSELDMTRDREI 230
             RE E  R+ +R+  R+R  + ++ R+ E   ++   R  D +    +R  + D  R+R+ 
Sbjct:   257 RERERERERERE-RREREREREREREREKEKERERERERDRDR---DRTKDRDRDRERDR 312

Query:   231 DGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQRREELK 290
             D   D     D  KD  SR R+ S  D  + RE           + +E +R  +R ++ K
Sbjct:   313 DRDRDRERSSDRNKDR-SRSREKSR-DRERERERERERERERERE-REREREREREKDKK 369

Query:   291 KEISHMEERVNVKEQLVLDLQKRSKKLEEAL----INAKKLSSHRQKQLTKLYKCFIQVN 346
             ++    EE    + +L   L+++    +E L    I  +K S   +K+  +  +   ++ 
Sbjct:   370 RDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKSREYEKEAEREEERRREMA 429

Query:   347 EYAERLK 353
             + A+RLK
Sbjct:   430 KEAKRLK 436

 Score = 96 (38.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 48/200 (24%), Positives = 81/200 (40%)

Query:   164 QDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             +D+   + RE    RD  +    ++   E + +++E   +   R  + E    ER+ E +
Sbjct:   218 EDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRERERERERERERRERERERE 277

Query:   224 MTRDREIDGTDDYHTIVDEGKDHLS-RKRDGSTVDDHQL-REFXXXXXXXXX-XQVKELD 280
               R+RE +   +     D  +D    R RD     D    RE            + K  D
Sbjct:   278 REREREKEKERERERERDRDRDRTKDRDRDRERDRDRDRDRERSSDRNKDRSRSREKSRD 337

Query:   281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSH-RQKQLTKL 338
             R  +R  E ++E     ER   +E+     +KR ++  EE     +KL    R+K+    
Sbjct:   338 REREREREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAA-- 395

Query:   339 YKCFIQVNEYAERLKSCERE 358
             Y+  ++  E  ER KS E E
Sbjct:   396 YQERLKNWEIRERKKSREYE 415

 Score = 92 (37.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
 Identities = 36/150 (24%), Positives = 63/150 (42%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQG---RDLENNDQGHTRIHDPELAN 215
             ER   ++R++   RE E  R+ ++D  RDR  DE+     R LE   +     +   L N
Sbjct:   343 EREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKN 402

Query:   216 WE----RKS-ELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXX 270
             WE    +KS E +   +RE +   +        K+ L    D    DD +          
Sbjct:   403 WEIRERKKSREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDR--DDPKYYRGSALQKR 460

Query:   271 XXXXQVKELDRSIQRREELKKEISHMEERV 300
                 + KE++   + R+  K+E+  + +R+
Sbjct:   461 LRDRE-KEMEADERDRKREKEELEEIRQRL 489

 Score = 73 (30.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++V+VG +   A++  +R++  K G V++ K V   S + + +GF  +  P S + A+
Sbjct:    45 TTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRAL 102


>DICTYBASE|DDB_G0270634 [details] [associations]
            symbol:DDB_G0270634 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
            EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
            InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
            Uniprot:Q55D63
        Length = 368

 Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 25/78 (32%), Positives = 58/78 (74%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVD 95
             ++ + +++  LP++  ++ ++++F  YG+V++ K+  D++T+  KC+GFV++ N +SA+ 
Sbjct:   284 NESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIA 343

Query:    96 AINDMNGRTIDGRVVRVS 113
             AI ++NGR I+G+ ++V+
Sbjct:   344 AIQELNGRAIEGKKLKVN 361

 Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAIND 99
             +V+VG +P S NE+ V ++F+K+G+++ + I+ D+ T   K   F+TF     A +A+N 
Sbjct:    19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78

Query:   100 MN 101
              N
Sbjct:    79 TN 80


>UNIPROTKB|G1K177 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
            Uniprot:G1K177
        Length = 644

 Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF  + +  +A+ A+ +
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   100 MNGRTIDGRVVRVSEVATRGRK 121
             +NGR   GR +RV   A+   K
Sbjct:    77 LNGREFSGRALRVDNAASEKNK 98


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 160 (61.4 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 29/90 (32%), Positives = 55/90 (61%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
             ++VY+       +++S+R VF KYG  ++VK++ D S + K +GFV+F + ++A +A+ D
Sbjct:   190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVED 249

Query:   100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             MNGR I+G+ + V     +  +    ++ F
Sbjct:   250 MNGRDINGQTIFVGRAQKKVERQAELKEMF 279


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 151 (58.2 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             ++  +S+ V  L Y  + D++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAVLDGRELRV-QMARYGRPPDS 98


>UNIPROTKB|F2Z2U1 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
            HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
            IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
            Ensembl:ENST00000361046 Ensembl:ENST00000382639
            Ensembl:ENST00000382653 Uniprot:F2Z2U1
        Length = 81

 Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGR 103
               DMNG+
Sbjct:    65 AKDMNGK 71


>UNIPROTKB|G3V5Z6 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
            ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
            ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
        Length = 189

 Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G +  + ++ D  T R K YGF+TF +   A  A+  +
Sbjct:    15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74

Query:   101 NGRTIDGRVVRVSEVATR 118
             NG  + GR +RV  V  R
Sbjct:    75 NGFELAGRPMRVGHVTER 92


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
             S +++GGL +   E  + + F K G VV  +IV DR S R K +GFVTF +   A  A+ 
Sbjct:    34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93

Query:    99 DMNGRTIDGRVVRV 112
             + NG+ ++GR + V
Sbjct:    94 EFNGQQLNGRTIFV 107


>UNIPROTKB|J3KQ82 [details] [associations]
            symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
            ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
            Ensembl:ENST00000454978 Uniprot:J3KQ82
        Length = 459

 Score = 161 (61.7 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
             D    +++GGL    NE  ++ VF K+G +  V ++ DR+++ + + F+TF NP  A +A
Sbjct:     5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
               DMNG ++ G+ ++V E A +    + GR
Sbjct:    65 AKDMNGTSLHGKAIKV-EQAKKPSFQSGGR 93


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 150 (57.9 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
             +D  +S+ V  L Y  + +++R+VF+KYG V  V I  DR T+  + + FV F + R A 
Sbjct:    10 VDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 69

Query:    95 DAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             DA++ M+G  +DGR +RV ++A  GR  +S
Sbjct:    70 DAMDAMDGAILDGRELRV-QMARYGRPPDS 98


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAIN 98
             SS++V G   S +E  ++KVF ++G V  VKI+ N+R+ +   YG+V F +   A  A+ 
Sbjct:    77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136

Query:    99 DMNGRTIDGRVVRV 112
              MNG+  DGR + V
Sbjct:   137 AMNGKFFDGRFILV 150


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 156 (60.0 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    +E  +   F K+G +  V ++ DR T + + + FVT+ NP  A D
Sbjct:     5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  +MNG+ +DG+ ++V E AT+ +   SGR
Sbjct:    65 AAREMNGKPLDGKPIKV-EQATKPQFETSGR 94

 Score = 41 (19.5 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 12/32 (37%), Positives = 13/32 (40%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRD 197
             RD G     +H    D   SRD  S  D  RD
Sbjct:   185 RDDGPPHRDDHYGSKDSYSSRDYMSSRDS-RD 215


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 138 (53.6 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAKPRS 94


>UNIPROTKB|Q8EK89 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 138 (53.6 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 39/117 (33%), Positives = 61/117 (52%)

Query:    23 VIFNLIEERVKMTIDDESSV------YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS 76
             +IF L+ +  K   DDE  V      YVG LPY  +E  V+ +F ++G V +V++V DR 
Sbjct:    41 LIFKLVPDSGKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRK 100

Query:    77 T-RGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSEVATRGRKS--NSGRDQ 128
             T R K +GFV       + A+  +ND N      R ++V E  T+  ++   +G D+
Sbjct:   101 TGRRKGFGFVEMSEAGAQKAMVKLNDFN---FQERTLKVREAKTQDSEAADRTGTDE 154


>TIGR_CMR|SO_0208 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 138 (53.6 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 39/117 (33%), Positives = 61/117 (52%)

Query:    23 VIFNLIEERVKMTIDDESSV------YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS 76
             +IF L+ +  K   DDE  V      YVG LPY  +E  V+ +F ++G V +V++V DR 
Sbjct:    41 LIFKLVPDSGKAQADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRK 100

Query:    77 T-RGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSEVATRGRKS--NSGRDQ 128
             T R K +GFV       + A+  +ND N      R ++V E  T+  ++   +G D+
Sbjct:   101 TGRRKGFGFVEMSEAGAQKAMVKLNDFN---FQERTLKVREAKTQDSEAADRTGTDE 154


>UNIPROTKB|E1C8Y9 [details] [associations]
            symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
            EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
            UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
            Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
            NextBio:20822814 Uniprot:E1C8Y9
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>UNIPROTKB|Q3SZR8 [details] [associations]
            symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
            species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
            EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
            ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
            Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
            InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
            NextBio:20878535 Uniprot:Q3SZR8
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>UNIPROTKB|F2Z4N6 [details] [associations]
            symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
            OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
            ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
            Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
            NextBio:20817191 Uniprot:F2Z4N6
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>UNIPROTKB|P84103 [details] [associations]
            symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
            GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
            EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
            OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
            EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
            RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
            PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
            MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
            PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
            GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
            HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
            PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
            EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
            ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
            Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>MGI|MGI:98285 [details] [associations]
            symbol:Srsf3 "serine/arginine-rich splicing factor 3"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
            speck" evidence=IDA] [GO:0043274 "phospholipase binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
            OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
            EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
            EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
            EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
            IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
            UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
            STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
            Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
            KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
            CleanEx:MM_SFRS3 Genevestigator:P84104
            GermOnline:ENSMUSG00000071172 Uniprot:P84104
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>RGD|1309233 [details] [associations]
            symbol:Srsf3 "serine/arginine-rich splicing factor 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
            "phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
            GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
            KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
            IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
            STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
            KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
            Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
        Length = 164

 Score = 120 (47.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  + N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:     9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDAADAVR 64

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
             +++GRT+ G  VRV       R  N G
Sbjct:    65 ELDGRTLCGCRVRVELSNGEKRSRNRG 91

 Score = 37 (18.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
             R+ S  RD+   R     R+H   PSR       + R  E
Sbjct:   125 RSRSLSRDRRRERSLSRERNHK--PSRSFSRSRSRSRSNE 162


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 158 (60.7 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D    +++GGL    +E ++   F KYG +V V ++ DR T + + + FVTF +P  A  
Sbjct:     5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             A  DMNG+++DG+ ++V++ AT+    +S R
Sbjct:    65 AARDMNGKSLDGKAIKVAQ-ATKPAFESSRR 94


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 160 (61.4 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query:    35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSA 93
             T  +  +++VG LP+SANEDSV +VF   G+V+ +++  D  S R K +G+V + +   A
Sbjct:   379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
               A N++ G  IDGR +R+     R      G
Sbjct:   439 RKAYNELQGAEIDGRPIRLDFSTPRANNGGGG 470

 Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
 Identities = 28/91 (30%), Positives = 52/91 (57%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             ++++VG L ++  E+ + + F+++G + A +I+ +R T R + +G+V F N   A  A  
Sbjct:   277 ANLFVGNLSWNVTEEWLHQEFEQFGELSA-RIMTERDTGRSRGFGYVEFTNAADAAKAYE 335

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
              M    IDGR + + + AT GR +N  +  F
Sbjct:   336 AMKEHEIDGRKINL-DYAT-GRPANKDQGGF 364


>FB|FBgn0032822 [details] [associations]
            symbol:CG10466 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
            RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
            SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
            PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
            EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
            UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
            OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
            ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
        Length = 154

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/93 (33%), Positives = 52/93 (55%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + ++V G PY+  E  +  VF +YG VV + ++ D  T + K + F+ + + RS V A
Sbjct:    32 DSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLA 91

Query:    97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQ 128
             ++++NG  I  R +RV  VA  +  K N   D+
Sbjct:    92 VDNLNGIKILDRTLRVDHVADYKPPKENEKMDE 124


>UNIPROTKB|Q48A10 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
            STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 33/95 (34%), Positives = 56/95 (58%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR--SA 93
             +D  ++YVG LPY ANE SVR++F ++GSV +V+++ D+ T + + +GFV   +     A
Sbjct:    68 EDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKA 127

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRG-RKSNSGRD 127
             + A+ND        R ++V E   R  R  ++ +D
Sbjct:   128 ISALNDTE---FQQRTLKVREAKERPERTEDNNQD 159


>TIGR_CMR|CPS_0338 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
            RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
            GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 33/95 (34%), Positives = 56/95 (58%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR--SA 93
             +D  ++YVG LPY ANE SVR++F ++GSV +V+++ D+ T + + +GFV   +     A
Sbjct:    68 EDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKA 127

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRG-RKSNSGRD 127
             + A+ND        R ++V E   R  R  ++ +D
Sbjct:   128 ISALNDTE---FQQRTLKVREAKERPERTEDNNQD 159


>TAIR|locus:2101714 [details] [associations]
            symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
            involved in RNA interference" evidence=RCA] [GO:0035196 "production
            of miRNAs involved in gene silencing by miRNA" evidence=RCA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
            eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
            EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
            RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
            ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
            PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
            KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
            HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
            PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
            GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
        Length = 427

 Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 56/219 (25%), Positives = 88/219 (40%)

Query:    35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
             T D   +++V  L Y ++E  +++ F+ YG +  V +V D+ T + K Y F+ + + R  
Sbjct:   133 TGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDM 192

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXX 153
               A    +G+ IDGR V V     RGR   + R +                         
Sbjct:   193 KAAYKQADGQKIDGRRVLVD--VERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQG 250

Query:   154 XXXXXERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPEL 213
                  E  S    ++   RE    R+  R+ S ++    ++ RD    D+ H R  D   
Sbjct:   251 RTSQSEEPSRPREEREKSREKGKERERSRELSHEQ--PRERSRDRPREDKHH-RDRDQGG 307

Query:   214 ANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRD 252
              + +R S  D  RDR  D  D      D G+D  SR  D
Sbjct:   308 RDRDRDSRRD--RDRTRDRGDRDRRDRDRGRDRTSRDHD 344


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 32/94 (34%), Positives = 60/94 (63%)

Query:    27 LIEERVKMTIDDES--SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYG 83
             + ++  + +I D+S  SV+VG +PY A E+ ++++F + G V+++K+V DR S + K +G
Sbjct:     1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFG 60

Query:    84 FVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
             F  + +  +A+ A+ ++NG  I GR +RV    T
Sbjct:    61 FCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94


>UNIPROTKB|G4NKC1 [details] [associations]
            symbol:MGG_03086 "U2 snRNP component IST3" species:242507
            "Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
            ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
            KEGG:mgr:MGG_03086 Uniprot:G4NKC1
        Length = 330

 Score = 130 (50.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 28/93 (30%), Positives = 52/93 (55%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + VY GGL  + +E  +  +F +YG  V +K+V D+ T + + +G++ + + RS   A
Sbjct:    31 DTAFVYFGGLDDTLSEGDIITIFSQYGEPVFLKLVRDKETGKSRGFGWLKYEDQRSTDLA 90

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             ++++ G  I  R++RV     +GR      D+F
Sbjct:    91 VDNLGGAVIKDRMMRVDHARYKGRDDEDD-DEF 122

 Score = 65 (27.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 30/116 (25%), Positives = 49/116 (42%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN---DQGHTRIH----DP 211
             ++ SS+ +DK   R   H   H         SD++ G D +     D+  +R      D 
Sbjct:   193 QKKSSRRKDKDGSRSSRHHHHHRTSRKHREESDDEAGSDRKRRKRRDESRSRERRRRDDY 252

Query:   212 ELANWERKSEL---DMTRDREIDGTDD--YHTIVDEGKDHLSRKRDGSTVDDHQLR 262
             +  +  R S+    D ++DR     DD  +H   D G+++ SR RD    D  + R
Sbjct:   253 KDKDKHRDSDSRRRDDSKDRRRRERDDDGHHRSKDRGREN-SRDRDRDRHDRERHR 307

 Score = 64 (27.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query:   161 TSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENND-QGHTRIHDPELANWERK 219
             + S+ RD    R      D     S+DR  +  + RD + +D + H R HD    + ER+
Sbjct:   261 SDSRRRDDSKDRRRRERDDDGHHRSKDRGRENSRDRDRDRHDRERHRRRHDSRERH-ERR 319

Query:   220 SELDMTR 226
              E   +R
Sbjct:   320 KERPRSR 326

 Score = 54 (24.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             +R   +  D G  R  +  R++ RD  RDR  D ++ R   ++ + H R
Sbjct:   271 DRRRRERDDDGHHRSKDRGRENSRDRDRDRH-DRERHRRRHDSRERHER 318

 Score = 49 (22.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGR 196
             R +S+DRD+       H R HD     +R  +  + R
Sbjct:   290 RENSRDRDRDRHDRERHRRRHDSRERHERRKERPRSR 326


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 135 (52.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 29/82 (35%), Positives = 48/82 (58%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
             S +++GGL +S +E S++  F  +G V  V+I  D+ S R + +GFV F     A+ A +
Sbjct:    41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100

Query:    99 DMNGRTIDGRVVRVSEVATRGR 120
              M+G+ + GR +R+S    R R
Sbjct:   101 AMDGKGLLGRPLRISFALERVR 122


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 27/85 (31%), Positives = 52/85 (61%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
             S+++V G+ +S+ E+++ + F +YG V+ V ++ D+   R K + +VTF +   A  A+ 
Sbjct:    21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSN 123
             ++N + +DGRVV +    T+  K N
Sbjct:    81 ELNAQLVDGRVVILD--TTKAAKHN 103


>UNIPROTKB|Q8TBF4 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
            KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
            EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
            IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
            PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
            PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
            Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
            GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
            neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
            PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
            NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
            Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
        Length = 217

 Score = 141 (54.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 30/83 (36%), Positives = 47/83 (56%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP+S   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA +  
Sbjct:     9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RAINNKQLFGRVIKASIAIDNGR 91

 Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query:   277 KELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326
             K+  +  ++  E ++EI  +EE  +  E   LD   ++   ++A I  ++
Sbjct:   133 KKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQ 182


>ZFIN|ZDB-GENE-030131-698 [details] [associations]
            symbol:safb "scaffold attachment factor B"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
            SMART:SM00513 ZFIN:ZDB-GENE-030131-698 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:BX323550 EMBL:BX901933
            IPI:IPI00993560 Ensembl:ENSDART00000129766 ArrayExpress:F1QVW3
            Bgee:F1QVW3 Uniprot:F1QVW3
        Length = 888

 Score = 159 (61.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 69/291 (23%), Positives = 112/291 (38%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAIND 99
             +++V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT  +   A   I+ 
Sbjct:   419 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMCSIEEATKCISH 478

Query:   100 MNGRTIDGRVVRVSEVATR--GRKSNSGRD--QFXXXXXXXXXXXXXXXXXXXXXXXXXX 155
             ++   + GR++ V        G+K     D  +                           
Sbjct:   479 LHRTELHGRMISVERAKNEPAGKKPADKNDAKKSVSDRRLSSDSKTDKSENKDEKTEGDG 538

Query:   156 XXXERTSSQDRDKGMGREYEHVRDHDRDP-SRDRFSDEDQGRDL-------ENNDQGHTR 207
                ERT   D+ KG        +  +R   SRDR S   + +D+       E  ++   R
Sbjct:   539 KGGERTVVMDKSKGEPVISLKTKSKERSSKSRDRNSLSKERKDILSFDQIKEQRERERQR 598

Query:   208 IHDPELANWERKSELDMTRDREIDGTDDYHTI--VDEGKDHLSRKRDGSTVDDHQLREFX 265
               + E+   ER+      RDR+ D   +   I    E ++ L RKR    V+  +L    
Sbjct:   599 QREREIREVERRRNSG-ERDRDRDRRSERERIRLFREKEERLMRKRKMLEVEKQRL---D 654

Query:   266 XXXXXXXXXQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKK 316
                      + + L    +RR E ++     EE    +EQL  +  +R  K
Sbjct:   655 ADRMEREFLERERLRVEYERRREQERIHREREELRRQQEQLRFEQDRRPVK 705


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 133 (51.9 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 28/72 (38%), Positives = 45/72 (62%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             VYVG L  +  +D +R+ F  YG+VV   ++ DR T R + +GFVT+ +   A  A++ M
Sbjct:     5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64

Query:   101 NGRTIDGRVVRV 112
             +G+ ++GR V V
Sbjct:    65 DGKELNGRRVSV 76


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 154 (59.3 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
             M  D    +++GGL    +E +++  F KYG ++ V ++ DR T + + + FVTF +P  
Sbjct:     2 MEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPAD 61

Query:    93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
             A  A  DMNG+ +DG+ + V++      KS+
Sbjct:    62 AKAAARDMNGKYLDGKAIMVAQTIKPAFKSS 92

 Score = 50 (22.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   161 TSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQ 203
             +SSQ    G G  YE  R H  D +    S +   R  +++ Q
Sbjct:   695 SSSQSNRYGGGGRYEEYRGHSLDANSGGRSPDTYSRGHDSSSQ 737

 Score = 50 (22.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 30/108 (27%), Positives = 42/108 (38%)

Query:   160 RTSSQDRDKGMGRE---YE--HVRDHDRDPSRD--RFSDEDQGRDLENNDQGHTRIHDPE 212
             R  S D + G GR    Y   H      DP R   R+ +E++G  L+ N  GH+    P 
Sbjct:   783 RGRSLDANSG-GRSPNAYSGGHNSSSRNDPCRGGGRY-EENRGHSLDANSGGHS----PN 836

Query:   213 LANWERKSELDM-TRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDH 259
               +  R S  +   R     G   Y      G+ H +  R G + D H
Sbjct:   837 AYSGGRDSSSNSYDRSHRYGGGGHYEEY--RGRSHDTHSR-GRSPDAH 881

 Score = 46 (21.3 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDP-SRDRFSDEDQG-RDLENNDQGHTRIHDPE 212
             + +S  DR  G+G  YE  R H  D  S  R  D   G     +N  G +  +  E
Sbjct:   496 DNSSWSDR-YGVGGHYEENRGHSLDANSGGRSPDTHSGGHSSSSNSYGQSHRYGGE 550


>UNIPROTKB|J9NZ20 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
            RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
            Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
            Uniprot:J9NZ20
        Length = 217

 Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP+S   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA++  
Sbjct:     9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RAINNKQLFGRVIKASIAIDNGR 91


>MGI|MGI:1914447 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
            EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
            UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
            STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
            Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
            KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
            ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
            Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
        Length = 217

 Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP+S   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA++  
Sbjct:     9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RAINNKQLFGRVIKASIAIDNGR 91


>RGD|1309851 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
            RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
            SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
            KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
            Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
        Length = 217

 Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP+S   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA++  
Sbjct:     9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCT 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RAINNKQLFGRVIKASIAIDNGR 91


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 151 (58.2 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
             +++YV  LP   +E  ++ +F ++G +++VK++ D S   +C+GFV F     A  A+  
Sbjct:   191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250

Query:   100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             MNG+ + GR++       R  + N  + +F
Sbjct:   251 MNGKEVSGRLLYAGRAQKRVERQNELKRRF 280


>ASPGD|ASPL0000074275 [details] [associations]
            symbol:AN4665 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
            ProteinModelPortal:Q5B465 STRING:Q5B465
            EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
            OMA:VFSQNRY Uniprot:Q5B465
        Length = 279

 Score = 149 (57.5 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 54/230 (23%), Positives = 94/230 (40%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +Y+GGLP+  +E  +  +F +YG  V + +V D+ T + + + F+ + + RS   A
Sbjct:    31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLA 90

Query:    97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
             ++++ G T+ GRV+RV     + R  +   +                             
Sbjct:    91 VDNLGGATVLGRVLRVDHTRYKKRDEDEDTNNVAKLLGETAGKEADGDTDDEGRRRKRGH 150

Query:   157 XXERTSSQDRDKGMGREYEH---VRDHD-RDPSRDRFSDEDQ---GRDLENNDQGHTRIH 209
               ER   Q R + +  E E    +R+HD  DP ++   +E +    R LE   +      
Sbjct:   151 SGER--DQPRRQLLKEEIELEELIRNHDDEDPMKEYLIEEKKEEVARALEKEARKERSSR 208

Query:   210 DPELANWERKSELDMTRDREIDGTDDYHTIVDEG-KDHLSR-KRDGSTVD 257
               E +  ER S       R     DD     +   +D+  R +RD S  D
Sbjct:   209 RRESSR-ERPSRHSRHHHRHRRHNDDRSRSRERSSRDYRERSRRDRSYRD 257


>TAIR|locus:2114643 [details] [associations]
            symbol:SR34a "Serine/Arginine-Rich Protein Splicing
            Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
            IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
            UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
            STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
            EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
            TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
            ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
        Length = 300

 Score = 137 (53.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 35/87 (40%), Positives = 49/87 (56%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
             S+YVG LP    E  +  +F KYG +V +++      R  CY FV F + R A DAI   
Sbjct:     8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIEL--KVPPRPPCYCFVEFEHSRDAEDAIKGR 65

Query:   101 NGRTIDGRVVRVSEVATRGR-KSNSGR 126
             +G  +DG  +RV E+A  GR +S+S R
Sbjct:    66 DGYNLDGCRLRV-ELAHGGRGQSSSDR 91

 Score = 51 (23.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
             ++YE  R   R PSR R     + R      + H+R
Sbjct:   196 KKYESSRSRSRSPSRSRSRSRSRSRS-RGRGRSHSR 230

 Score = 44 (20.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN 201
             R+ S+ R +G GR +   R   R  S  +   +   R L  +
Sbjct:   214 RSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRS 255

 Score = 38 (18.4 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDED 193
             R+ S+ R +  GR   H R   R  SR +   +D
Sbjct:   212 RSRSRSRSRSRGRGRSHSRS--RSLSRSKSPRKD 243


>UNIPROTKB|F5GZU3 [details] [associations]
            symbol:SAFB "Scaffold attachment factor B1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 HGNC:HGNC:10520
            ChiTaRS:SAFB IPI:IPI00983392 ProteinModelPortal:F5GZU3 SMR:F5GZU3
            Ensembl:ENST00000433404 UCSC:uc010xiu.2 ArrayExpress:F5GZU3
            Bgee:F5GZU3 Uniprot:F5GZU3
        Length = 747

 Score = 156 (60.0 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 62/294 (21%), Positives = 114/294 (38%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   239 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 298

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFXXXXXXXXXXXXXXXXXXXX------XXXX 153
                + G+++ V +      G+K++  RD                                
Sbjct:   299 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKG 358

Query:   154 XXXXXERTSSQDRDK-GMGREYEHVRDHDRDPSRDRFSDEDQGRDL-----ENNDQGHTR 207
                  E++  QD  K G        +   R   R    D+ +G  +       + +  ++
Sbjct:   359 DDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASK 418

Query:   208 IHDPELANWERKS--ELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFX 265
               D + A+ E++S    D  ++       + H+ V E  +   R +      + + RE  
Sbjct:   419 SQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQ---AQWEREERERL 475

Query:   266 XXXXXXXXXQVKELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLE 318
                      Q + L+R    RE L++E  H+E ER   +E++  + ++  ++ E
Sbjct:   476 EIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQE 529


>POMBASE|SPBC887.05c [details] [associations]
            symbol:cwf29 "RNA-binding protein Cwf29" species:4896
            "Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
            assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
            Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
            GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
            RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
            STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
            KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
            Uniprot:O94290
        Length = 217

 Score = 136 (52.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
 Identities = 29/82 (35%), Positives = 51/82 (62%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             D + +Y+G L +  NED +  VF ++G  V + +V D+ T + K + F+ + + RS V A
Sbjct:    29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLA 88

Query:    97 INDM-NGRTIDGRVVRVSEVAT 117
             +++M N + +D R+VRV  VA+
Sbjct:    89 VDNMTNVKLLD-RLVRVDHVAS 109

 Score = 41 (19.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             E+T S   +K +    + +RD+     R +   E   R  +++   H+R H    +   R
Sbjct:   156 EQTLSPKDEKDL---LDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSR-HHRRHSRSRR 211

Query:   219 KSELD 223
               +LD
Sbjct:   212 HRDLD 216


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 148 (57.2 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
             VYVG L +  ++ ++  +F + G VV  +++ DR S R K +GFVT+ + +   +AI  +
Sbjct:   206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query:   101 NGRTIDGRVVRVSEVATR 118
             +G  +DGR +RVSE   R
Sbjct:   266 DGADLDGRQIRVSEAEAR 283

 Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
 Identities = 23/73 (31%), Positives = 43/73 (58%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             ++VG LP++ +   + ++F+  G+V  V+++ D+ T R + +GFVT  +      A    
Sbjct:    93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query:   101 NGRTIDGRVVRVS 113
             NG  +DGR +RV+
Sbjct:   153 NGYELDGRPLRVN 165


>UNIPROTKB|Q15424 [details] [associations]
            symbol:SAFB "Scaffold attachment factor B1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0001047 "core promoter binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=IEA] [GO:0040007 "growth" evidence=IEA] [GO:0042445
            "hormone metabolic process" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0006325
            "chromatin organization" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
            Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
            SMART:SM00513 GO:GO:0005634 GO:GO:0040007 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
            GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0003690 GO:GO:0001047
            GO:GO:0042445 GO:GO:0030520 GO:GO:0006325 EMBL:AC011499 EMBL:U72355
            EMBL:AK298707 EMBL:AC004611 EMBL:AC134303 EMBL:AB208780 EMBL:L43631
            IPI:IPI00300631 IPI:IPI00941773 PIR:S64732 RefSeq:NP_002958.2
            UniGene:Hs.728802 ProteinModelPortal:Q15424 SMR:Q15424
            IntAct:Q15424 MINT:MINT-1033560 STRING:Q15424 PhosphoSite:Q15424
            DMDM:116242782 PaxDb:Q15424 PRIDE:Q15424 Ensembl:ENST00000292123
            Ensembl:ENST00000454510 GeneID:6294 KEGG:hsa:6294 UCSC:uc002mcf.3
            CTD:6294 GeneCards:GC19P005574 H-InvDB:HIX0014682 HGNC:HGNC:10520
            HPA:CAB001969 HPA:HPA016832 HPA:HPA020076 MIM:602895
            neXtProt:NX_Q15424 PharmGKB:PA34928 eggNOG:NOG248048
            HOGENOM:HOG000092533 HOVERGEN:HBG078408 InParanoid:Q15424
            OMA:DKADRKD PhylomeDB:Q15424 ChiTaRS:SAFB GenomeRNAi:6294
            NextBio:24435 ArrayExpress:Q15424 Bgee:Q15424 CleanEx:HS_SAFB
            Genevestigator:Q15424 GermOnline:ENSG00000160633 Uniprot:Q15424
        Length = 915

 Score = 156 (60.0 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 62/294 (21%), Positives = 114/294 (38%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFXXXXXXXXXXXXXXXXXXXX------XXXX 153
                + G+++ V +      G+K++  RD                                
Sbjct:   469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKG 528

Query:   154 XXXXXERTSSQDRDK-GMGREYEHVRDHDRDPSRDRFSDEDQGRDL-----ENNDQGHTR 207
                  E++  QD  K G        +   R   R    D+ +G  +       + +  ++
Sbjct:   529 DDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASK 588

Query:   208 IHDPELANWERKS--ELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFX 265
               D + A+ E++S    D  ++       + H+ V E  +   R +      + + RE  
Sbjct:   589 SQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQ---AQWEREERERL 645

Query:   266 XXXXXXXXXQVKELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLE 318
                      Q + L+R    RE L++E  H+E ER   +E++  + ++  ++ E
Sbjct:   646 EIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQE 699


>UNIPROTKB|A0AV56 [details] [associations]
            symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
            PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802
            GeneID:6294 KEGG:hsa:6294 CTD:6294 HGNC:HGNC:10520
            HOGENOM:HOG000092533 HOVERGEN:HBG078408 ChiTaRS:SAFB
            GenomeRNAi:6294 NextBio:24435 OrthoDB:EOG4F4S9X EMBL:BC126219
            EMBL:BC143937 IPI:IPI00983392 RefSeq:NP_001188267.1
            ProteinModelPortal:A0AV56 SMR:A0AV56 STRING:A0AV56 PRIDE:A0AV56
            Ensembl:ENST00000588852 UCSC:uc002mcg.3 ArrayExpress:A0AV56
            Bgee:A0AV56 Uniprot:A0AV56
        Length = 917

 Score = 156 (60.0 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 62/294 (21%), Positives = 114/294 (38%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFXXXXXXXXXXXXXXXXXXXX------XXXX 153
                + G+++ V +      G+K++  RD                                
Sbjct:   469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKG 528

Query:   154 XXXXXERTSSQDRDK-GMGREYEHVRDHDRDPSRDRFSDEDQGRDL-----ENNDQGHTR 207
                  E++  QD  K G        +   R   R    D+ +G  +       + +  ++
Sbjct:   529 DDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASK 588

Query:   208 IHDPELANWERKS--ELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFX 265
               D + A+ E++S    D  ++       + H+ V E  +   R +      + + RE  
Sbjct:   589 SQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQ---AQWEREERERL 645

Query:   266 XXXXXXXXXQVKELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLE 318
                      Q + L+R    RE L++E  H+E ER   +E++  + ++  ++ E
Sbjct:   646 EIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQE 699


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/104 (28%), Positives = 59/104 (56%)

Query:    11 VSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK 70
             V+T+++  +      +  E+    +     ++YVG LPY ANE  V+++F ++G V AV+
Sbjct:    37 VATALICKLSTHPTLSSSEDEEASSTT--KTLYVGNLPYKANESHVKELFAEFGEVFAVR 94

Query:    71 IVNDRST-RGKCYGFVTFG--NPRSAVDAINDMN--GRTIDGRV 109
             ++ D+ T + + +GFV       ++A+DA+N+     RT+  R+
Sbjct:    95 LMKDKRTGKRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRI 138


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/104 (28%), Positives = 59/104 (56%)

Query:    11 VSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK 70
             V+T+++  +      +  E+    +     ++YVG LPY ANE  V+++F ++G V AV+
Sbjct:    37 VATALICKLSTHPTLSSSEDEEASSTT--KTLYVGNLPYKANESHVKELFAEFGEVFAVR 94

Query:    71 IVNDRST-RGKCYGFVTFG--NPRSAVDAINDMN--GRTIDGRV 109
             ++ D+ T + + +GFV       ++A+DA+N+     RT+  R+
Sbjct:    95 LMKDKRTGKRRGFGFVVIAASQAQTAIDALNEKEYMQRTLKVRI 138


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             S + V  LP+S +ED +++ F  +G +  VK++ D +  R K Y F+ F +   A  AI 
Sbjct:    40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
              M+ R  +GR++ + ++A  G++   G
Sbjct:   100 TMDRRMYNGRMIYI-DIAKPGKRDFQG 125


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SVYVG  P+   ED +   F + G+V  V+IV DR T R + + FV F    +A  A++ 
Sbjct:     5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64

Query:   100 MNGRTIDGRVVRVSEVATR 118
              NG   +GR +RV+    R
Sbjct:    65 FNGVDFNGRALRVNLAQNR 83


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SVYVG  P+   ED +   F + G+V  V+IV DR T R + + FV F    +A  A++ 
Sbjct:     5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64

Query:   100 MNGRTIDGRVVRVSEVATR 118
              NG   +GR +RV+    R
Sbjct:    65 FNGVDFNGRALRVNLAQNR 83


>WB|WBGene00007396 [details] [associations]
            symbol:tiar-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
            "calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
            RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
            EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
            UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
        Length = 450

 Score = 151 (58.2 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 40/121 (33%), Positives = 66/121 (54%)

Query:    11 VSTSIVVPIKARVIFNLIEERVKMTIDDESS--VYVGGLPYSANEDSVRKVFDKYGSVVA 68
             ++ +IV+   A V+ +  E  ++M ID      V+VG L    + + ++  F K+G V  
Sbjct:   195 LANAIVLQESA-VLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSE 253

Query:    69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
              K++ D  T + K YGFV+F N ++A +AI  MNG+ I  R VR +  A +  + N  RD
Sbjct:   254 AKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEEN--RD 311

Query:   128 Q 128
             +
Sbjct:   312 K 312


>SGD|S000005483 [details] [associations]
            symbol:HRP1 "Subunit of cleavage factor I" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
            [GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
            [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
            EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
            EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
            RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
            ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
            MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
            EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
            HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
            EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
            GermOnline:YOL123W Uniprot:Q99383
        Length = 534

 Score = 152 (58.6 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 32/100 (32%), Positives = 57/100 (57%)

Query:    29 EERVKMTIDDES-SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
             EER K  +  ES  +++GGL +   ED++R+ F KYG+V  +KI+ D +T R + +GF++
Sbjct:   147 EERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLS 206

Query:    87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
             F  P S  + +   +   +DG+V+       R  +  +G+
Sbjct:   207 FEKPSSVDEVVKTQH--ILDGKVIDPKRAIPRDEQDKTGK 244


>UNIPROTKB|B7Z2F6 [details] [associations]
            symbol:SAFB "cDNA FLJ54744, highly similar to Scaffold
            attachment factor B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011499
            EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802 HGNC:HGNC:10520
            HOVERGEN:HBG078408 ChiTaRS:SAFB EMBL:AK294671 IPI:IPI01018318
            SMR:B7Z2F6 STRING:B7Z2F6 Ensembl:ENST00000538656 UCSC:uc010xit.2
            Uniprot:B7Z2F6
        Length = 759

 Score = 154 (59.3 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 60/292 (20%), Positives = 115/292 (39%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   252 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 311

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFXXXXXXXXXXXXXXXXXXXX------XXXX 153
                + G+++ V +      G+K++  RD                                
Sbjct:   312 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKG 371

Query:   154 XXXXXERTSSQDRDK-GMGREYEHVRDHDRDPSRDRFSDEDQGRDL-----ENNDQGHTR 207
                  E++  QD  K G        +   R   R    D+ +G  +       + +  ++
Sbjct:   372 DDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASK 431

Query:   208 IHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXX 267
               D + A+ E++S +   + +E   + D  +     ++   R++      + + RE    
Sbjct:   432 SQDRKSASREKRSVVSFDKVKEPRKSRDSES--HRVRERSEREQRMQAQWEREERERLEI 489

Query:   268 XXXXXXXQVKELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLE 318
                    Q + L+R    RE L++E  H+E ER   +E++  + ++  ++ E
Sbjct:   490 ARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQE 541


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 129 (50.5 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SVYVG  P+   E+ +   F   G +  V+IV DR T R + + F+ F    SA  A+  
Sbjct:     6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65

Query:   100 MNGRTIDGRVVRVS 113
             MNG   +GR +RV+
Sbjct:    66 MNGAEFNGRPLRVN 79


>UNIPROTKB|Q56JZ7 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
            EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
            UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
            Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
            HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
            OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
        Length = 217

 Score = 141 (54.7 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 30/83 (36%), Positives = 47/83 (56%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP+S   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA +  
Sbjct:     9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCT 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RAINNKQLFGRVIKASIAIDNGR 91


>UNIPROTKB|G3X6B1 [details] [associations]
            symbol:LOC787645 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102108 EMBL:DAAA02019579 EMBL:DAAA02019580
            Ensembl:ENSBTAT00000002342 Uniprot:G3X6B1
        Length = 699

 Score = 137 (53.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   350 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCINHLH 409

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRD 127
                + G+++ V +V     G+K++  R+
Sbjct:   410 KTELHGKMISVEKVINEPAGKKTSERRE 437

 Score = 60 (26.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 37/179 (20%), Positives = 71/179 (39%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLEN-NDQGHTRIHDPELANWE 217
             E++SS DR   + RE +  R  D     D   ++ + +D +       +R         E
Sbjct:   443 EKSSSADRSANLKREEKADRKDDAKKGEDGSGEKSEDQDDQKPGSSERSRATKSGSRGTE 502

Query:   218 RKSELDMTRDREIDGTDDYHTI--VDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQ 275
             R   +D ++   +       +   V + +D  S   +  +V      +           +
Sbjct:   503 RTVVMDKSKGVPVISVKTLGSKERVSKSQDRKSGSIEKQSVGSFDKVKESKKSRESESCR 562

Query:   276 VKEL-DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQK 333
             V+EL DR    + EL+++  H EE +  +E+L    Q+R   LE   +  ++L   R +
Sbjct:   563 VRELGDREQYAQAELERQ-EH-EELLFARERLAF--QRRL--LERERMERERLERKRMR 615

 Score = 47 (21.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query:   281 RSIQRRE-ELKKEISHMEER-VNVKEQLVLDLQKRSKKLEE 319
             ++ +RRE E KKE S   +R  N+K +   D +  +KK E+
Sbjct:   431 KTSERREGERKKEKSSSADRSANLKREEKADRKDDAKKGED 471


>UNIPROTKB|B7ZLP6 [details] [associations]
            symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
            InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
            SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC011499 EMBL:AC004611
            EMBL:AC134303 UniGene:Hs.728802 GeneID:6294 KEGG:hsa:6294 CTD:6294
            HGNC:HGNC:10520 HOVERGEN:HBG078408 ChiTaRS:SAFB GenomeRNAi:6294
            NextBio:24435 EMBL:BC143939 IPI:IPI00646058 RefSeq:NP_001188268.1
            ProteinModelPortal:B7ZLP6 STRING:B7ZLP6 PRIDE:B7ZLP6
            Ensembl:ENST00000592224 UCSC:uc002mce.4 Bgee:B7ZLP6 Uniprot:B7ZLP6
        Length = 916

 Score = 154 (59.3 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 60/292 (20%), Positives = 115/292 (39%)

Query:    43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN ++
Sbjct:   409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query:   102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFXXXXXXXXXXXXXXXXXXXX------XXXX 153
                + G+++ V +      G+K++  RD                                
Sbjct:   469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKG 528

Query:   154 XXXXXERTSSQDRDK-GMGREYEHVRDHDRDPSRDRFSDEDQGRDL-----ENNDQGHTR 207
                  E++  QD  K G        +   R   R    D+ +G  +       + +  ++
Sbjct:   529 DDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASK 588

Query:   208 IHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXX 267
               D + A+ E++S +   + +E   + D  +     ++   R++      + + RE    
Sbjct:   589 SQDRKSASREKRSVVSFDKVKEPRKSRDSES--HRVRERSEREQRMQAQWEREERERLEI 646

Query:   268 XXXXXXXQVKELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLE 318
                    Q + L+R    RE L++E  H+E ER   +E++  + ++  ++ E
Sbjct:   647 ARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQE 698


>TAIR|locus:2196521 [details] [associations]
            symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
            ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
            RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
            SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
            GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
            OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
        Length = 291

 Score = 146 (56.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 36/93 (38%), Positives = 54/93 (58%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + V+VGGL +    D +R+ FD++G ++   I+ D++T + K YGFVTF +  SA  A+ 
Sbjct:    17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS---GRDQ 128
             D N   IDGR    + +A+ GR   S   GR Q
Sbjct:    77 DPNP-VIDGRKANCN-IASFGRPRPSTPRGRGQ 107


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 128 (50.1 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
             SVYVG +PY   E+ +   F   G V  V+IV DR T R + + FV F     A  A+  
Sbjct:     7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66

Query:   100 MNGRTIDGRVVRVS 113
             +NG   +GR +RV+
Sbjct:    67 LNGVAFNGRNLRVN 80


>UNIPROTKB|H0YJJ3 [details] [associations]
            symbol:RBM23 "Probable RNA-binding protein 23" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
            EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
            Uniprot:H0YJJ3
        Length = 214

 Score = 140 (54.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G +  + ++ D  T R K YGF+TF +   A  A+  +
Sbjct:    40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99

Query:   101 NGRTIDGRVVRVSEVATR 118
             NG  + GR +RV  V  R
Sbjct:   100 NGFELAGRPMRVGHVTER 117


>UNIPROTKB|Q5ZJX4 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
            UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
            InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
        Length = 215

 Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAKPRS 94


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
             +++YV  LP   +E  ++ +F ++G +++VK++ D S   +C+GFV F     A  A+  
Sbjct:   191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250

Query:   100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             MNG+ + GR++       R  + N  + +F
Sbjct:   251 MNGKEVSGRLLYAGRAQKRVERQNELKRRF 280

 Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/73 (32%), Positives = 42/73 (57%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
             ++YV  L  S ++D +RK F  YG + + K++ +     K +GFV F +P  A  A+ +M
Sbjct:   295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGG-HSKGFGFVCFSSPEEATKAVTEM 353

Query:   101 NGRTIDGRVVRVS 113
             NGR +  + + V+
Sbjct:   354 NGRIVGTKPLYVA 366


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/93 (31%), Positives = 51/93 (54%)

Query:    30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
             ER     D    +YVG LP+  +   + ++F ++G VV  ++V+DR T R + +GFV   
Sbjct:   197 ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMS 256

Query:    89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 121
             N      AI  ++G+ ++GR ++V+    R R+
Sbjct:   257 NENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

 Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 24/85 (28%), Positives = 48/85 (56%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
             +E+ ++VG LPY  +  ++  +F++ G+V   +++ +R T + + +GFVT      A  A
Sbjct:   111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170

Query:    97 INDMNGRTIDGRVVRVSEVATRGRK 121
             +   N   ++GR + V+  A RG +
Sbjct:   171 VEKFNSFEVNGRRLTVNRAAPRGSR 195


>UNIPROTKB|E1BTK3 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
            RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
            Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
            NextBio:20821039 Uniprot:E1BTK3
        Length = 216

 Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/83 (34%), Positives = 47/83 (56%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  LP++   + + ++F KYG VV V I+ D+ TR  K   F+ F +  SA +  
Sbjct:     9 KSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCS 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GRV++ S     GR
Sbjct:    69 RALNNKQLFGRVIKASIAIDNGR 91


>ZFIN|ZDB-GENE-030131-591 [details] [associations]
            symbol:srsf4 "serine/arginine-rich splicing factor
            4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
            CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
            RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
            Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
            InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
        Length = 366

 Score = 138 (53.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 34/86 (39%), Positives = 47/86 (54%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
             S VYVG L Y A E  V + F  YG ++ V + N        YGFV F +PR A DA+ D
Sbjct:     2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNG-------YGFVEFDDPRDADDAVYD 54

Query:   100 MNGRTIDGRVVRVSEVATRGRKSNSG 125
             +NG+ + G+ V V    T G++ + G
Sbjct:    55 LNGKDLCGKRVIVEH--TIGQRRDGG 78

 Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 28/106 (26%), Positives = 36/106 (33%)

Query:   163 SQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHD-PELANWERKSE 221
             S  R +   R     R H R  SR   S   + R    + +  +R     E +N  RK  
Sbjct:   191 SASRSRSRSRRSRRSRSHSRTSSRSGASGS-RSRSRSTSKKAKSRSSRMEESSNGARKGG 249

Query:   222 LDMTRDREIDGTDDYHTIVDEGK----DHLSRKRDGSTVDDHQLRE 263
              D  RD  +  +        E K    D  SR R  S  D    RE
Sbjct:   250 -DSGRDNSLSRSPQNKKSKRENKRGRSDSRSRSRSKSRNDRDLSRE 294

 Score = 48 (22.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 14/69 (20%), Positives = 28/69 (40%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERK 219
             R+ S+ R +   R    +       S++     D+GR   +  + H+R       N +++
Sbjct:   274 RSDSRSRSRSKSRNDRDLSRESGSKSQEASKSGDEGRAGTHRSRAHSRSRSQTPPNADQR 333

Query:   220 SELDMTRDR 228
              E   +R R
Sbjct:   334 RE-SRSRSR 341

 Score = 38 (18.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDR 188
             +R  S+ R +   +   H R      SR R
Sbjct:   332 QRRESRSRSRSRSKSRSHSRSQSYSRSRSR 361


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 146 (56.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query:    29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
             E++      +E  +YVG LPY+     + ++F + G+VV V+IV D+ T R + +GFVT 
Sbjct:   105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164

Query:    88 GNPRSAVDAINDMNGRTIDGRVVRVS 113
             G+   A +A+   N   I GR V+V+
Sbjct:   165 GSIEEAKEAMQMFNSSQIGGRTVKVN 190

 Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/98 (24%), Positives = 51/98 (52%)

Query:    28 IEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
             I +  +  +D    VY G L ++     ++  F     V+  K++ +R+T R + +GF++
Sbjct:   207 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFIS 266

Query:    87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
             F +  +   A+  MNG  ++GR +R++  + R + + S
Sbjct:   267 FESAENVQSALATMNGVEVEGRALRLNLASEREKPTVS 304


>WB|WBGene00004700 [details] [associations]
            symbol:rsp-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
            GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
            ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
            PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
            EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
            GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
            WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
            NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 33/89 (37%), Positives = 45/89 (50%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++  VYVG LP    E  V  +F KYG +   K V+ +S RG  + FV F + R A DA+
Sbjct:     7 EDQKVYVGNLPGDVREKEVEDIFHKYGRI---KYVDIKSGRGPAFAFVEFEDHRDAEDAV 63

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
                +G   DGR +RV      G +   GR
Sbjct:    64 RARDGYEFDGRRIRVEFTRGVGPRGPGGR 92


>UNIPROTKB|Q9NEW6 [details] [associations]
            symbol:rsp-3 "Probable splicing factor,
            arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
            eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
            GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
            EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
            SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
            EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
            EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
            UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
            KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 33/89 (37%), Positives = 45/89 (50%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++  VYVG LP    E  V  +F KYG +   K V+ +S RG  + FV F + R A DA+
Sbjct:     7 EDQKVYVGNLPGDVREKEVEDIFHKYGRI---KYVDIKSGRGPAFAFVEFEDHRDAEDAV 63

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
                +G   DGR +RV      G +   GR
Sbjct:    64 RARDGYEFDGRRIRVEFTRGVGPRGPGGR 92


>ZFIN|ZDB-GENE-040825-2 [details] [associations]
            symbol:snrnp70 "small nuclear ribonucleoprotein 70
            (U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
            IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
            STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
            KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
        Length = 495

 Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 58/234 (24%), Positives = 90/234 (38%)

Query:    37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
             D   +++V  + Y   E  +R+ F+ YG +  + IV ++ T + + Y F+ + + R    
Sbjct:   100 DAFKTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHS 159

Query:    96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFXXXXXXXXXXXXXXXXXXXXXXXXXX 155
             A    +G+ IDGR V V     RGR     R +                           
Sbjct:   160 AYKHADGKKIDGRRVLVD--VERGRTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTS 217

Query:   156 XXXERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELA- 214
                +R    DRD+  G   E  R+ DRD  R    +  + R  E   + HTR H+ E A 
Sbjct:   218 RYDDRPIGSDRDRDRGERRERSRERDRDKER---GERRRSRSRER--RRHTRSHERERAA 272

Query:   215 --NWERKSELDMTRDREIDGT---DDYHTIVDEGKDHLSRKRDGSTVDDHQLRE 263
               +    S     R+RE  G    +      D  +D   RKR   + D  + RE
Sbjct:   273 AGDEAGGSSRRRERERERGGAGAGESRERSRDRDRDR-DRKRRSRSRDRKRDRE 325


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 28/78 (35%), Positives = 48/78 (61%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G + A++++ D  T R K YGF+T+ N   A  A+  +
Sbjct:   337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396

Query:   101 NGRTIDGRVVRVSEVATR 118
             NG  + GR+++V  V  R
Sbjct:   397 NGFELAGRLMKVGNVTER 414


>MGI|MGI:1914289 [details] [associations]
            symbol:Rbm25 "RNA binding motif protein 25" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006915 "apoptotic process" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=ISO] InterPro:IPR000504 InterPro:IPR002483
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
            PROSITE:PS51025 SMART:SM00311 SMART:SM00360 MGI:MGI:1914289
            GO:GO:0005737 GO:GO:0006915 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            Gene3D:1.20.1390.10 GO:GO:0000381 CTD:58517 eggNOG:NOG250187
            KO:K12822 OMA:EDINAME OrthoDB:EOG498V0R SUPFAM:SSF101233
            EMBL:AK011184 EMBL:AK011403 EMBL:AK076553 EMBL:AK142132
            EMBL:AK151910 EMBL:AK164367 EMBL:BC158104 EMBL:BC010792
            EMBL:BC066150 EMBL:BC067400 IPI:IPI00421119 IPI:IPI00662049
            IPI:IPI00928541 RefSeq:NP_081625.3 UniGene:Mm.46005
            ProteinModelPortal:B2RY56 SMR:B2RY56 IntAct:B2RY56 STRING:B2RY56
            PhosphoSite:B2RY56 PaxDb:B2RY56 PRIDE:B2RY56
            Ensembl:ENSMUST00000048155 GeneID:67039 KEGG:mmu:67039
            UCSC:uc007odj.1 UCSC:uc007odl.1 GeneTree:ENSGT00700000104356
            InParanoid:Q8BVT8 NextBio:323382 Bgee:B2RY56 Genevestigator:B2RY56
            Uniprot:B2RY56
        Length = 838

 Score = 125 (49.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 41/145 (28%), Positives = 64/145 (44%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN---DQGHTRIHDPELAN 215
             ER   ++RD+   RE    R+ DR  SR++  D ++ R+ E     ++   R  + E   
Sbjct:   355 ERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERER 414

Query:   216 W-ERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRK-RDGSTVDDHQLREFXXXXXXXXX 273
               ER+ E D  RDRE D  D Y       +  L RK R+       +L+ +         
Sbjct:   415 EREREREKDKKRDREEDEEDAYE------RRKLERKLREKEAAYQERLKNWEIRERKKTR 468

Query:   274 XQVKELDRSIQRREELKKEISHMEE 298
                KE +R  +RR E+ KE   ++E
Sbjct:   469 EYEKEAEREEERRREMAKEAKRLKE 493

 Score = 97 (39.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 44/197 (22%), Positives = 78/197 (39%)

Query:   164 QDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             +D+   + RE    RD  +    ++   E + +++E   +   R  + E    ER+ E +
Sbjct:   270 EDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRERERERERERERRERERERE 329

Query:   224 MTRDREIDGTDDYHTIVDEGKDHLS-RKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRS 282
               R+RE +   +     D  +D    R RD     D                + K  DR 
Sbjct:   330 REREREKEKERERERERDRDRDRTKERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRE 389

Query:   283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342
              +R  E ++E     ER   +E+     ++R K  +      ++ +  R+K   KL +  
Sbjct:   390 REREREREREREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLRE-- 447

Query:   343 IQVNEYAERLKSCE-RE 358
              +   Y ERLK+ E RE
Sbjct:   448 -KEAAYQERLKNWEIRE 463

 Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++V+VG +   A++  +R++  K G V++ K V   S + + +GF  +  P S + A+
Sbjct:    87 TTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRAL 144


>UNIPROTKB|I3LLA0 [details] [associations]
            symbol:RBM25 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0006915 GO:GO:0000166
            GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
            GeneTree:ENSGT00700000104356 EMBL:CU633699
            Ensembl:ENSSSCT00000032106 Uniprot:I3LLA0
        Length = 513

 Score = 120 (47.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 40/163 (24%), Positives = 76/163 (46%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ER   +DRD+   R+ +  R+ DRD  R+R SD ++ R   + ++   R  + E    ER
Sbjct:   344 ERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRS-RSREKSRDRERERERER-ER 401

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKE 278
             + E +  R+RE +   +     +  KD   R R+    D ++ R+             + 
Sbjct:   402 EREREREREREREREREREREREREKDK-KRDREEDEEDAYERRKLERKLREKEAAYQER 460

Query:   279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321
             L ++ + RE  +K+    E+    +E+   ++ K +K+L+E L
Sbjct:   461 L-KNWEIRE--RKKTREYEKEAEREEERRREMAKEAKRLKEFL 500

 Score = 89 (36.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 41/198 (20%), Positives = 77/198 (38%)

Query:   164 QDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELD 223
             +D+   + RE    RD  +    ++   E + +++E   +   R  + E    ER+ E +
Sbjct:   271 EDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRERERERERERERRERERERE 330

Query:   224 MTRDREIDGTDDYHTIVDEGKDHLS-RKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRS 282
               R+RE +   +     D  +D    R RD     D                + +E  R 
Sbjct:   331 REREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRD 390

Query:   283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342
              +R  E ++E     ER   +E+     ++R ++ E+     ++       +  KL +  
Sbjct:   391 REREREREREREREREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKL 450

Query:   343 IQVNE-YAERLKSCE-RE 358
              +    Y ERLK+ E RE
Sbjct:   451 REKEAAYQERLKNWEIRE 468

 Score = 87 (35.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
 Identities = 47/196 (23%), Positives = 82/196 (41%)

Query:   165 DRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDM 224
             + +KG  +E E  R       R+R  + ++ R+ E  ++   R  + E    E++ E + 
Sbjct:   292 EEEKGK-KEKE--RQEIEKERRER--ERERERERERREREREREREREREK-EKERERER 345

Query:   225 TRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQ 284
              RDR+ D T +     D  +D   R RD     D                + +E +R  +
Sbjct:   346 ERDRDRDRTKERDRDRDRERD---RDRDRERSSDRNKDRSRSREKSRDRERERERERERE 402

Query:   285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSH-RQKQLTKLYKCF 342
             R  E ++E     ER   +E+     +KR ++  EE     +KL    R+K+    Y+  
Sbjct:   403 REREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAA--YQER 460

Query:   343 IQVNEYAERLKSCERE 358
             ++  E  ER K+ E E
Sbjct:   461 LKNWEIRERKKTREYE 476

 Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++V+VG +   A++  +R++  K G V++ K V   S + + +GF  +  P S + A+
Sbjct:    87 TTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRAL 144


>UNIPROTKB|H9KZ12 [details] [associations]
            symbol:H9KZ12 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 EMBL:AADN02043355 EMBL:AADN02043356
            Ensembl:ENSGALT00000003015 OMA:HERDERQ Uniprot:H9KZ12
        Length = 873

 Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 64/308 (20%), Positives = 130/308 (42%)

Query:    41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAIND 99
             +++V GL  S     ++ +F KYG VV  K+V N RS   +CYGFVT      A   IN 
Sbjct:   406 NLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCINH 465

Query:   100 MNGRTIDGRVVRVSEVATR--GRKSNS---GRDQFXXXXXXXXXXXXXXXXXXXXXXXXX 154
             ++   + G+++ V +      G+K +    G  +                          
Sbjct:   466 LHRTELHGKMISVEKAKNEPAGKKPSDRKEGEARKEKDRHHSADSKSEKSVGVKKEEKAD 525

Query:   155 XXXXERTSSQD-RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRD---LENNDQGHTRIHD 210
                  + S +D +D+  G+E E  +    D SR   S   +G +   + +  +G   I  
Sbjct:   526 KKDDAKKSDKDSKDEKEGKEKEEQKAGASDRSRASKS-ASRGTERTVVMDKSKGEPVISV 584

Query:   211 PELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXX 270
                A+ ER ++   ++DR+ +  +    I+   K    R+R+     + ++RE       
Sbjct:   585 KTSASKERSTK---SQDRKSESKEK-QDILSFDKIKEQRERERQRQREREIRETERRRER 640

Query:   271 XXXXQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSK-KLEEALINAKKLSS 329
                 + + L +++  R+E ++ +    ER+  + Q  LD ++  + +LE   ++ ++   
Sbjct:   641 ERREREQRL-QAMHERDE-RQRLQRERERLEFQRQR-LDRERLERERLERERMHIEQERR 697

Query:   330 HRQKQLTK 337
               Q+++ +
Sbjct:   698 REQERIQR 705


>TAIR|locus:2049339 [details] [associations]
            symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
            HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
            UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
            EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
            TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
            PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
            Genevestigator:Q9SJ28 Uniprot:Q9SJ28
        Length = 117

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 33/96 (34%), Positives = 51/96 (53%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
             M  + E + +V GL    +E  +  +F K+G+V+  KI+ DR T + + +GFVTF   +S
Sbjct:     1 MATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60

Query:    93 AVDAINDMNGRTIDGRVVRVS----EVATRGRKSNS 124
               DAI  M+      + V V     EVA + RK+ S
Sbjct:    61 MTDAIMIMDVEESRSKCVNVGSITVEVARQRRKNRS 96


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query:    30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
             ER     +    VYVG LP+  +   + ++F ++G VV  ++V DR T R + +GFVT  
Sbjct:   234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293

Query:    89 NPRSAVDAINDMNGRTIDGRVVRVSEVATR 118
             +     +AI+ ++G+ ++GR +RV+    R
Sbjct:   294 DVDELNEAISALDGQNLEGRAIRVNVAEER 323

 Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 26/96 (27%), Positives = 54/96 (56%)

Query:    28 IEERVKMTI-DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFV 85
             + ER +     +E+ ++VG L Y  N  ++  +F++ G+V   +++ +R T + + +GFV
Sbjct:   137 VSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 196

Query:    86 TFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 121
             T  +   A  A+   N   ++GR++ V++ A RG +
Sbjct:   197 TMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 140 (54.3 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD-AI 97
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  + RSA D A 
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMAD-RSAADRAC 69

Query:    98 NDMNGRTIDGRVVRVSEVATRGRK 121
              D N   IDGR   V+ +A  G K
Sbjct:    70 KDPNP-IIDGRKANVN-LAYLGAK 91


>TAIR|locus:2075676 [details] [associations]
            symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
            PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
            EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
            RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
            ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
            PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
            KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
            HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
            PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
            Uniprot:Q9SD61
        Length = 352

 Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/72 (34%), Positives = 46/72 (63%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             VYVGG+P+   E  +  VF +YG +V V ++ D+ T + K + F+ + + RS + A++++
Sbjct:    38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query:   101 NGRTIDGRVVRV 112
             NG  + GR ++V
Sbjct:    98 NGALVLGRTIKV 109


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 145 (56.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 27/101 (26%), Positives = 56/101 (55%)

Query:    29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88
             E  ++    + ++VY+       +++ ++ VF KYG  ++VK++ D S + K +GFV+F 
Sbjct:   179 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238

Query:    89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             +  +A  A+ +MNGR I+G+++ V     +  +    +  F
Sbjct:   239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279


>ZFIN|ZDB-GENE-030616-631 [details] [associations]
            symbol:srsf3a "serine/arginine-rich splicing factor
            3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
            GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
            EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
            UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
            Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
            InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
        Length = 174

 Score = 121 (47.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
             +  VYVG L  S N+  + + F  YG + +V +   R+  G  + FV F +PR A DA+ 
Sbjct:    13 DCKVYVGNLGNSGNKTELERAFGYYGPLRSVWVA--RNPPG--FAFVEFEDPRDATDAVR 68

Query:    99 DMNGRTIDGRVVRVSEVATRGRKS 122
             +++GRT+ G  VRV E++   ++S
Sbjct:    69 ELDGRTLCGCRVRV-EMSNGEKRS 91

 Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query:   160 RTSSQDRDKGMGREYEHVRDHDRDPSRDR 188
             R+ S+ R + + RE    R  +R  SRDR
Sbjct:   129 RSFSRSRSRSLSRE----RRRERSLSRDR 153

 Score = 37 (18.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSR 186
             ER+ S+DR+    R +   R   R   R
Sbjct:   146 ERSLSRDRNYKPSRSFSGSRSRSRSNGR 173


>ZFIN|ZDB-GENE-041210-114 [details] [associations]
            symbol:zcrb1 "zinc finger CCHC-type and RNA binding
            motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
            HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
            OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
            RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
            SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
            eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
            Bgee:Q5SP50 Uniprot:Q5SP50
        Length = 218

 Score = 138 (53.6 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query:    39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAI 97
             +S+VYV  +P+S     + K+  KYG VV V IV D+ TR  K   FV F +  SA +  
Sbjct:     9 KSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCS 68

Query:    98 NDMNGRTIDGRVVRVSEVATRGR 120
               +N + + GR+V+ S     GR
Sbjct:    69 RSLNNKQLFGRMVKASIAIDNGR 91


>MGI|MGI:2146808 [details] [associations]
            symbol:Safb2 "scaffold attachment factor B2" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            MGI:MGI:2146808 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
            eggNOG:NOG248048 HOGENOM:HOG000092533 HOVERGEN:HBG078408
            OrthoDB:EOG4F4S9X CTD:9667 OMA:GTEDNGL ChiTaRS:SAFB2 EMBL:BC050855
            EMBL:BC028827 IPI:IPI00857736 RefSeq:NP_001025150.2
            UniGene:Mm.214973 UniGene:Mm.482517 ProteinModelPortal:Q80YR5
            SMR:Q80YR5 PhosphoSite:Q80YR5 PaxDb:Q80YR5 PRIDE:Q80YR5
            Ensembl:ENSMUST00000075510 GeneID:224902 KEGG:mmu:224902
            UCSC:uc008dcg.1 NextBio:377444 Bgee:Q80YR5 CleanEx:MM_SAFB2
            Genevestigator:Q80YR5 GermOnline:ENSMUSG00000042625 Uniprot:Q80YR5
        Length = 991

 Score = 129 (50.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 28/100 (28%), Positives = 50/100 (50%)

Query:    29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTF 87
             +E+ + +     +++V GL  S     ++ +F K+G V+  K+V N RS   +CYGFVT 
Sbjct:   440 DEKGRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTM 499

Query:    88 GNPRSAVDAINDMNGRTIDGRVVRVSEVATR-GRKSNSGR 126
                  A   I+ ++   + GR++ V +       K +S R
Sbjct:   500 STSDEATKCISHLHRTELHGRMISVEKAKNEPSEKKSSDR 539

 Score = 68 (29.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 33/163 (20%), Positives = 65/163 (39%)

Query:   172 REYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRDREID 231
             +E +  R  ++ P  D   ++DQ  +L     GH+R+        ER   +D ++   + 
Sbjct:   568 KEEKLERKEEKGPE-DIKKEKDQD-ELTPGAAGHSRVTKSGSRGMERTVVMDKSKGEPVI 625

Query:   232 GTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQRREELKK 291
                         KD  S+ +D  +    + RE           + +E +R  QR  E+++
Sbjct:   626 SVK----ATSRSKDRSSKSQDRKS----EGREKRDILSFDKIKEQRERERQRQREREIRE 677

Query:   292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQ 334
                  E     +EQ +   Q+R +K   A +  +++    Q+Q
Sbjct:   678 TERRREREQREREQRLDAFQERREK---ARLQRERMQLQCQRQ 717

 Score = 63 (27.2 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 38/165 (23%), Positives = 67/165 (40%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ERT   D+ KG       V+   R  S+DR S + Q R  E  ++      D      +R
Sbjct:   611 ERTVVMDKSKG--EPVISVKATSR--SKDR-SSKSQDRKSEGREKRDILSFDK--IKEQR 663

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKE 278
             + E    R+REI  T+         ++   R+R+       + RE           Q + 
Sbjct:   664 ERERQRQREREIRETE-------RRREREQREREQRLDAFQERREKARLQRERMQLQCQR 716

Query:   279 --LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321
               L+R    RE L++E   +E     ++Q ++  ++  ++ +E L
Sbjct:   717 QRLERERLERERLERERMRVERERRKEQQRIMREREELRRQQEQL 761

 Score = 47 (21.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 22/76 (28%), Positives = 32/76 (42%)

Query:   166 RDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMT 225
             RD G   E +     DR   RD    + +  D ++ D+GH + H  +  +  R      T
Sbjct:   780 RDDGYWPEGKRAALEDR--YRDFPRPDHRFHDFDHRDRGHYQEHVIDRRDGSR------T 831

Query:   226 RDREIDGT---DDYHT 238
             R  E DG    DD H+
Sbjct:   832 RVEERDGQYYPDDQHS 847


>UNIPROTKB|G4N7J4 [details] [associations]
            symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
            RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
            KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
            EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
            Uniprot:G4N7J4
        Length = 479

 Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query:    38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
             ++ ++YVGGL     ED +R++F+  G V  VKI+ D++ +G  YGFV + +P +A  A+
Sbjct:    83 NKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAM 142

Query:    98 NDMNGRTIDGRVVRVS---EVATRGRKSNS 124
               +NGR +    +RV+   + AT   K ++
Sbjct:   143 QTLNGRRVHQSEIRVNWAYQAATSATKEDT 172


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 28/84 (33%), Positives = 50/84 (59%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G + +++++ D  T R K YGF+TF +   A  A+  +
Sbjct:    95 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 154

Query:   101 NGRTIDGRVVRVSEVATRGRKSNS 124
             NG  + GR ++V  V  R   S++
Sbjct:   155 NGFELAGRPMKVGHVTERTDASSA 178


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 139 (54.0 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    94 DPNPN-IDGRKANVN-LAYLGAKPRS 117


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 139 (54.0 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    94 DPNPN-IDGRKANVN-LAYLGAKPRS 117


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 27/101 (26%), Positives = 56/101 (55%)

Query:    29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88
             E  ++    + ++VY+       +++ ++ VF KYG  ++VK++ D S + K +GFV+F 
Sbjct:   237 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 296

Query:    89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
             +  +A  A+ +MNGR I+G+++ V     +  +    +  F
Sbjct:   297 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 337


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 29/76 (38%), Positives = 48/76 (63%)

Query:    35 TIDDE-SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
             T D + + ++VGGL +    D++R+ F+++G +V   ++ D++T R K YGFVTF    +
Sbjct:    16 TTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75

Query:    93 AVDAINDMNGRTIDGR 108
             A+ A  +MN   IDGR
Sbjct:    76 AMRACQNMNP-VIDGR 90


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 123 (48.4 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 25/87 (28%), Positives = 49/87 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++V  L     + S+R++F  +G +   +++ D  T R K +GF+TF +   A  A+ 
Sbjct:     7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
              ++G+ +DGR++ V EVA    +  +G
Sbjct:    67 SLDGKIVDGRLIFV-EVAKNAEEVRAG 92


>TAIR|locus:2032120 [details] [associations]
            symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
            EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
            ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
            EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
            TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
            ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
        Length = 287

 Score = 141 (54.7 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 35/93 (37%), Positives = 53/93 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + V+VGGL +    D +R+ F+++G ++   I+ D++T + K YGFVTF    SA  A+ 
Sbjct:    17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS---GRDQ 128
             D N   IDGR    + +A+ GR   S   GR Q
Sbjct:    77 DPNP-VIDGRKANCN-IASFGRPRPSPPRGRGQ 107


>ASPGD|ASPL0000055210 [details] [associations]
            symbol:AN0917 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
            eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
            OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
            EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
            OMA:YVEFRTI Uniprot:Q5BEW3
        Length = 552

 Score = 146 (56.5 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
             +YVG + +S +E+ ++ VF+ +G +  V++  D + R + YGFV F +P  A +A+  MN
Sbjct:   275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMN 334

Query:   102 GRTIDGRVVRVSEVATRGRKSNSGRDQ 128
             G  + GR +RV     +    N+ R Q
Sbjct:   335 GYDLGGRAIRVGLGNDKFTPENTQRTQ 361


>UNIPROTKB|G3XAP0 [details] [associations]
            symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
            HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
            ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
            ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
        Length = 269

 Score = 140 (54.3 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G +  + ++ D  T R K YGF+TF +   A  A+  +
Sbjct:    95 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 154

Query:   101 NGRTIDGRVVRVSEVATR 118
             NG  + GR +RV  V  R
Sbjct:   155 NGFELAGRPMRVGHVTER 172


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 138 (53.6 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 34/87 (39%), Positives = 50/87 (57%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD-AI 97
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  + R+A D A 
Sbjct:    32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD-RAAADRAC 90

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNS 124
              D N   IDGR   V+ +A  G K  S
Sbjct:    91 KDPNP-IIDGRKANVN-LAYLGAKPRS 115


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 138 (53.6 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 34/87 (39%), Positives = 50/87 (57%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD-AI 97
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  + R+A D A 
Sbjct:    32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD-RAAADRAC 90

Query:    98 NDMNGRTIDGRVVRVSEVATRGRKSNS 124
              D N   IDGR   V+ +A  G K  S
Sbjct:    91 KDPNP-IIDGRKANVN-LAYLGAKPRS 115


>UNIPROTKB|G3MY63 [details] [associations]
            symbol:BOLL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
            EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
        Length = 271

 Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 27/52 (51%), Positives = 35/52 (67%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
             ++VGG+ +  NE+ +RK F +YGSV  VKIVNDR+   K YGFVTF     A
Sbjct:    47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDA 98


>UNIPROTKB|Q9I8B3 [details] [associations]
            symbol:rbm24-b "RNA-binding protein 24-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
            EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
            ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
            CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
        Length = 224

 Score = 137 (53.3 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRK 121
             D N   IDGR   V+ +A  G K
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAK 91


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 144 (55.7 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 28/84 (33%), Positives = 50/84 (59%)

Query:    42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
             +YVG L ++  ED +R +F+ +G + +++++ D  T R K YGF+TF +   A  A+  +
Sbjct:   252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query:   101 NGRTIDGRVVRVSEVATRGRKSNS 124
             NG  + GR ++V  V  R   S++
Sbjct:   312 NGFELAGRPMKVGHVTERTDASSA 335


>UNIPROTKB|Q5ZMA3 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
            IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
            ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
            KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
        Length = 225

 Score = 137 (53.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRK 121
             D N   IDGR   V+ +A  G K
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAK 91


>UNIPROTKB|Q6GQD3 [details] [associations]
            symbol:rbm24-a "RNA-binding protein 24-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=IMP]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
            UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
            GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
            HOVERGEN:HBG108399 Uniprot:Q6GQD3
        Length = 225

 Score = 137 (53.3 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRK 121
             D N   IDGR   V+ +A  G K
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAK 91


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 138 (53.6 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 32/86 (37%), Positives = 48/86 (55%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 93

Query:    99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
             D N   IDGR   V+ +A  G K  S
Sbjct:    94 DPNP-IIDGRKANVN-LAYLGAKPRS 117


>UNIPROTKB|Q6P8A7 [details] [associations]
            symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
            evidence=ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
            HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
            RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
            SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
            Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
            Bgee:Q6P8A7 Uniprot:Q6P8A7
        Length = 226

 Score = 137 (53.3 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
             + ++VGGLPY   + S+RK F+ +G +    ++ DR T + + YGFVT  +  +A  A  
Sbjct:    11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70

Query:    99 DMNGRTIDGRVVRVSEVATRGRK 121
             D N   IDGR   V+ +A  G K
Sbjct:    71 DPNP-IIDGRKANVN-LAYLGAK 91


>UNIPROTKB|J3KTC1 [details] [associations]
            symbol:MSI2 "RNA-binding protein Musashi homolog 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
            EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
        Length = 141

 Score = 122 (48.0 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/76 (34%), Positives = 47/76 (61%)

Query:    40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI- 97
             S +++GGL +  + DS+R  F K+G +    ++ D +T R + +GFVTF +P S VD + 
Sbjct:    17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPAS-VDKVL 75

Query:    98 ----NDMNGRTIDGRV 109
                 ++++ +TID +V
Sbjct:    76 GQPHHELDSKTIDPKV 91


>TAIR|locus:2133249 [details] [associations]
            symbol:SR34b "Serine/Arginine-Rich Protein Splicing
            Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0010228 "vegetative to
            reproductive phase transition of meristem" evidence=RCA]
            [GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
            "hydrogen peroxide biosynthetic process" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
            UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
            EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
            OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
        Length = 278

 Score = 127 (49.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 34/90 (37%), Positives = 46/90 (51%)

Query:    34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
             M+     ++YVG LP    E  V  +F KYG VV + +       G  Y FV F + R A
Sbjct:     1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG--YAFVEFEDARDA 58

Query:    94 VDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
              DAI   +G   DG  +RV E+A  GR+S+
Sbjct:    59 DDAIYGRDGYDFDGHHLRV-ELAHGGRRSS 87

 Score = 51 (23.0 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query:   159 ERTSSQD-RDKGMGREYEHVRDHDRDPSRDR 188
             E  S +D R    GR Y   R   R PSR R
Sbjct:   192 EYDSRRDSRSPSRGRSYSKSRSRGRSPSRSR 222


>UNIPROTKB|F1SBU9 [details] [associations]
            symbol:SAFB2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
            PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
            GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:CU928983
            Ensembl:ENSSSCT00000014770 Uniprot:F1SBU9
        Length = 953

 Score = 132 (51.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 28/102 (27%), Positives = 53/102 (51%)

Query:    29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTF 87
             +E+ +++     +++V GL  +     ++ +F KYG VV  K+V N RS   +CYGFVT 
Sbjct:   393 DEKGRISSSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTM 452

Query:    88 GNPRSAVDAINDMNGRTIDGRVVRVSEVATR--GRKSNSGRD 127
                  A   I+ ++   + GR++ V +      G+K +  ++
Sbjct:   453 STSDEATKCISHLHRTELHGRMISVEKAKNEPAGKKLSDRKE 494

 Score = 62 (26.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 38/164 (23%), Positives = 70/164 (42%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ERT   D+ KG       V+   R  S++R S + Q R  E+ ++      D      +R
Sbjct:   567 ERTVVMDKSKG--EPVISVKTTSR--SKER-SSKSQDRKSESKEKRDILSFDK--IKEQR 619

Query:   219 KSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXX--QV 276
             + E    R+REI  T+         ++   R+R+      H+ +E             Q 
Sbjct:   620 ERERQRQREREIRETE-------RRREREQREREQRLEAFHERKEKARLQRERLQLECQR 672

Query:   277 KELDRSIQRREELKKEISHME-ERVNVKEQLVLDLQKRSKKLEE 319
             + L+R    RE L++E   +E ER   +E++  + ++  ++ E+
Sbjct:   673 QRLERERMERERLERERMRVERERRKEQERIHREREELRRQQEQ 716

 Score = 62 (26.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 29/189 (15%), Positives = 83/189 (43%)

Query:   180 HDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWERKSELDMTRDREIDGTDDYHTI 239
             H R  S ++  +E  G+ L  +D+    +   +L+N +R   +++  D+ +   ++    
Sbjct:   471 HGRMISVEKAKNEPAGKKL--SDRKECEVKKEKLSNVDRHHSVEIKIDKTVIKKEEKIEK 528

Query:   240 VDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQ-VKELDRSIQRREELKKEISHMEE 298
              +E K    +K +    D+ +L+            +  + ++R++   +   + +  ++ 
Sbjct:   529 KEEKKPEEIKKEEK---DEDELKPGPTNRSRVTKSEGSRGMERTVVMDKSKGEPVISVKT 585

Query:   299 RVNVKEQLVLDLQKRSKKLEEA-LINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357
                 KE+      ++S+  E+  +++  K+   R+++  +  +  I+  E     +  ER
Sbjct:   586 TSRSKERSSKSQDRKSESKEKRDILSFDKIKEQRERERQRQREREIRETERRREREQRER 645

Query:   358 EFQVSIFNQ 366
             E ++  F++
Sbjct:   646 EQRLEAFHE 654

 Score = 52 (23.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 29/170 (17%), Positives = 69/170 (40%)

Query:   167 DKGMGREYEHV-RDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELAN-WERKSELDM 224
             DK + ++ E + +  ++ P   +  ++D+  +L+      +R+   E +   ER   +D 
Sbjct:   516 DKTVIKKEEKIEKKEEKKPEEIKKEEKDED-ELKPGPTNRSRVTKSEGSRGMERTVVMDK 574

Query:   225 TRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFXXXXXXXXXXQVKELDRSIQ 284
             ++   +             K+  S+ +D  +    + +E           + +E +R  Q
Sbjct:   575 SKGEPVISVKT----TSRSKERSSKSQDRKS----ESKEKRDILSFDKIKEQRERERQRQ 626

Query:   285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQ 334
             R  E+++     E     +EQ +    +R +K   A +  ++L    Q+Q
Sbjct:   627 REREIRETERRREREQREREQRLEAFHERKEK---ARLQRERLQLECQRQ 673

 Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 26/101 (25%), Positives = 42/101 (41%)

Query:   159 ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELANWER 218
             ER   Q+R   + RE E +R   R   + R+  E + R +        R  D      +R
Sbjct:   695 ERRKEQER---IHREREELR---RQQEQLRY--EQERRPVLRRPYDDVRRDDTYWPEGKR 746

Query:   219 KSELDMTRDREIDGTDD-YHTIV--DEGK--DHLSRKRDGS 254
              +  D  R  +    D  +H     D G+  DH++ +R+GS
Sbjct:   747 MAMEDRYRP-DFPRPDHRFHDFDHRDRGQYQDHVADRREGS 786

WARNING:  HSPs involving 745 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      386       347   0.00098  116 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  995
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  223 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.60u 0.08s 37.68t   Elapsed:  00:00:02
  Total cpu time:  37.62u 0.08s 37.70t   Elapsed:  00:00:02
  Start:  Mon May 20 17:58:12 2013   End:  Mon May 20 17:58:14 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G19960 AT5G19960 AT5G19960	protein from Arabidopsis thaliana	6.3e-53
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	3.0e-18
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	1.3e-16
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	3.7e-16
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	1.8e-15
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	3.9e-15
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	3.9e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	6.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	8.6e-15
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-14
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.4e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.4e-14
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.4e-14
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.9e-14
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	1.1e-13
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.7e-13
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.9e-13
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold inducible RNA binding protein, isoform CRA_c	protein from Homo sapiens	2.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.5e-13
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.7e-13
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	8.9e-13
BLAST match view associations BLAST with rbmx2 rbmx2 rbmx2 RNA binding motif protein, X-linked 2	gene_product from Danio rerio	1.0e-12
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	1.2e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.3e-12
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	1.3e-12
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	1.3e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	1.3e-12
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.5e-12
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.5e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	1.9e-12
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	2.7e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	3.2e-12
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	3.4e-12
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	3.4e-12
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	4.1e-12
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	4.1e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	5.3e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.9e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	8.9e-12
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.6e-11
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	2.6e-11
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-11
BLAST match view associations BLAST with F1P133 F1P133 F1P133 Uncharacterized protein	protein from Gallus gallus	3.2e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.1e-11
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA binding protein	protein from Coxiella burnetii RSA 493	5.3e-11
BLAST match view associations BLAST with CBU_0935 CBU_0935 CBU_0935 RNA-binding protein	protein from Coxiella burnetii RSA 493	5.3e-11
BLAST match view associations BLAST with DDB_G0294559 DDB_G0294559 DDB_G0294559 RNA-binding region RNP-1 domain-containing protein	gene from Dictyostelium discoideum	6.4e-11
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA-binding motif protein, X-linked 2	protein from Rattus norvegicus	7.5e-11
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	gene from Rattus norvegicus	7.6e-11
BLAST match view associations BLAST with RBMX2 RBMX2 RBMX2 Uncharacterized protein	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with cpf-2 cpf-2 cpf-2	gene from Caenorhabditis elegans	1.2e-10
BLAST match view associations BLAST with SFRS2 SFRS2 SFRS2 cDNA FLJ52570, highly similar to Splicing factor, arginine/serine-rich 2	protein from Homo sapiens	1.5e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	1.5e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	1.5e-10
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	1.9e-10
BLAST match view associations BLAST with rsp-6 rsp-6 rsp-6	gene from Caenorhabditis elegans	1.9e-10
BLAST match view associations BLAST with rsp-6 rsp-6 rsp-6 Probable splicing factor, arginine/serine-rich 6	protein from Caenorhabditis elegans	1.9e-10
BLAST match view associations BLAST with LOC534630 LOC534630 LOC534630 Uncharacterized protein	protein from Bos taurus	2.1e-10
BLAST match view associations BLAST with Rbmx2 Rbmx2 Rbmx2 RNA binding motif protein, X-linked 2	protein from Mus musculus	2.2e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.4e-10
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	2.4e-10
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	3.1e-10
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	3.1e-10
BLAST match view associations BLAST with DDB_G0291966 DDB_G0291966 DDB_G0291966 CCHC-type zinc finger-containing protein	gene from Dictyostelium discoideum	3.5e-10
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	4.4e-10
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	5.2e-10
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-10
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	5.2e-10
BLAST match view associations BLAST with AtRZ-1b AtRZ-1b AtRZ-1b AT1G60650	protein from Arabidopsis thaliana	5.4e-10
BLAST match view associations BLAST with RBMY1B RBMY1B RBMY1B RNA-binding motif protein, Y chromosome, family 1 member B	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1E RBMY1E RBMY1E RNA-binding motif protein, Y chromosome, family 1 member E	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1D RBMY1D RBMY1D RNA-binding motif protein, Y chromosome, family 1 member D	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1A1 RBMY1A1 RBMY1A1 RNA-binding motif protein, Y chromosome, family 1 member A1	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with RBMY1C RBMY1C RBMY1C RNA-binding motif protein, Y chromosome, family 1 member C	protein from Homo sapiens	6.4e-10
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	6.6e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	6.7e-10
BLAST match view associations BLAST with AT5G53680 AT5G53680 AT5G53680	protein from Arabidopsis thaliana	6.7e-10
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	7.0e-10
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	8.6e-10
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	1.0e-09